BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA
[Candidatus Liberibacter asiaticus str. psy62]
         (731 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|190892570|ref|YP_001979112.1| DNA ligase (NAD+) protein [Rhizobium etli CIAT 652]
 gi|254781398|sp|B3PTU7|DNLJ_RHIE6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190697849|gb|ACE91934.1| DNA ligase (NAD+) protein [Rhizobium etli CIAT 652]
          Length = 718

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/718 (47%), Positives = 492/718 (68%), Gaps = 5/718 (0%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
             +   ++ L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   F
Sbjct: 2   STEGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEARF 61

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P+L R    + P   +G   +++   V H+ P LSL+  ++ ED++ F+  +YRF  +  
Sbjct: 62  PELIRE---DSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLP 118

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
           D SI FT EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P
Sbjct: 119 DQSIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVP 178

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
            ++E+RGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +
Sbjct: 179 AVVEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAY 238

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             G+ +E+ A  Q+ M+Q  +  GFPVN  +++ N+   I+++Y+E+   R  L YDIDG
Sbjct: 239 AWGEMAEMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDG 298

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKVD   LQ++LG R+RSPRW  +HKF  +QA T +  I+IQ+GRTG LTPVARL+P+
Sbjct: 299 VVYKVDSLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPI 358

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
            +GG ++TNATLHNEDYIKG+  SG+ +R    DIR GD V+V+RAG+VIP+++D+++ +
Sbjct: 359 TVGGVVVTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEK 418

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  DA+ + FP  CP+C S  VR++N KTGK  +  RCTGG  C AQ  E LKHFVSR+A
Sbjct: 419 RAADARSYEFPKTCPVCGSHAVREVNEKTGKTDSVRRCTGGFICRAQATEHLKHFVSRNA 478

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           F+IEGLG +Q+DFFF++EDP+  IR   +IFTL++RQQ S TK+ENI GFG VSV  LY 
Sbjct: 479 FDIEGLGSKQVDFFFENEDPSLQIRTAPEIFTLEKRQQDSLTKLENIDGFGKVSVGKLYA 538

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +IN+RR+I+L RFI++LGIRHVG   A+ LA+ Y +Y+ FA  +      + + W  L  
Sbjct: 539 AINERRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGEAWTDLNA 598

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  +G+++A+A+VEFY+ PRN+  +  LL EV+P+         S +  K +VFTG+L+K
Sbjct: 599 IEGIGEVVARAMVEFYKEPRNVEVIGRLLDEVTPAEAEQPVTAGSPVAGKTVVFTGSLEK 658

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             R +A+     LGA V+  +S+KTDI++ G   GSKL+KA++LGV+ M+E+++L L+
Sbjct: 659 FTRDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716


>gi|86358438|ref|YP_470330.1| NAD-dependent DNA ligase LigA [Rhizobium etli CFN 42]
 gi|123738303|sp|Q2K6D3|DNLJ_RHIEC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|86282540|gb|ABC91603.1| DNA ligase (NAD+) protein [Rhizobium etli CFN 42]
          Length = 718

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/718 (47%), Positives = 493/718 (68%), Gaps = 5/718 (0%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
             +   +E L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   F
Sbjct: 2   STEGSAVETLTIEEAAAELERLAREIAHHDALYHGKDQPEISDADYDALKRRNDALEARF 61

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P+L R    + P  ++G   +++   V H+ P LSL+  ++ ED++ F+  +YRF  +  
Sbjct: 62  PELIRE---DSPSRRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVASVYRFLGRMP 118

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
           D SI FT EPKIDG  ++IRYE G+   AA RGDG +GE+V+A IR I  IP  L   +P
Sbjct: 119 DQSIAFTAEPKIDGLSMSIRYENGRLTTAATRGDGTTGENVTANIRTIAEIPNQLPKGVP 178

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
            ++E+RGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +
Sbjct: 179 AVVEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAY 238

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             G+ S++ A  Q+ M+Q  +  GFPVN  +++ N+   I+++Y+E+   R  L YDIDG
Sbjct: 239 AWGEMSDMPADTQFAMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLKRPDLDYDIDG 298

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKVD   LQ++LG R+RSPRW  +HKF  +QA T +  I+IQ+GRTG LTPVARL+P+
Sbjct: 299 VVYKVDSLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPI 358

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
            +GG ++TNATLHNEDYIKG+  SG+ +R    DIR GD V+V+RAG+VIP+++D+++ +
Sbjct: 359 TVGGVVVTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEK 418

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  + +P+ FP  CP+C S  VR++N KTGK+ +  RCTGG  C AQ  E LKHFVSR+A
Sbjct: 419 RLAEVKPYEFPKICPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNA 478

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           F+IEGLG +Q+DFFF++EDP+  IR   +IFTL++RQQ S TK+ENI GFG VSV  LY 
Sbjct: 479 FDIEGLGSKQIDFFFENEDPSLQIRTAPEIFTLEKRQQDSLTKLENIDGFGKVSVGKLYA 538

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +IN+RR+I+L RFI++LGIRHVG   A+ LA+ Y +Y+ FA  +      + D W  L  
Sbjct: 539 AINERRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGDAWNDLNA 598

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  +G+++A+A+VEFY+ PRN+  +  LL EV+P+         S +  K +VFTG+L+K
Sbjct: 599 IEGIGEVVARAMVEFYKEPRNVEVIGRLLDEVTPAEAEQPVTAGSPVAGKTVVFTGSLEK 658

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             R +A+     LGA V+  +S+KTDI++ G   GSKL+KA++LGV+ M+E+++L L+
Sbjct: 659 FTRDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716


>gi|241205543|ref|YP_002976639.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859433|gb|ACS57100.1| DNA ligase, NAD-dependent [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 718

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/718 (47%), Positives = 489/718 (68%), Gaps = 5/718 (0%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
             +   ++ L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   F
Sbjct: 2   STESSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDRPEISDADYDALKRRNDALEVRF 61

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P+L R    + P   +G   +++   V H+ P LSL+  ++ ED++ F+  +YRF  +  
Sbjct: 62  PELIRE---DSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLP 118

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
           D SI FT EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P
Sbjct: 119 DQSIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVP 178

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
            ++E+RGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +
Sbjct: 179 AVVEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAY 238

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             G+ SE+ A  Q+ M+Q  +  GFPVN  V++ N+   I+++Y+E+   R  L YDIDG
Sbjct: 239 AWGEMSEMPADTQFGMVQTFKDWGFPVNPLVKRLNSVADILTHYDEIGLERPDLDYDIDG 298

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKVD   LQ +LG R+RSPRW  +HKF  +QA T + +IDIQ+GRTG LTPVARL P+
Sbjct: 299 VVYKVDSLELQARLGFRSRSPRWATAHKFPAEQAFTIVENIDIQVGRTGALTPVARLTPI 358

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
            +GG ++TNATLHN DYI+G+  SG+ +R    DIR+GD V+V+RAG+VIP+V+D+++ +
Sbjct: 359 TVGGVVVTNATLHNADYIRGIGNSGERIRADEHDIRIGDTVIVQRAGDVIPQVLDVVMEK 418

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  +A+P+ FP  CP+C S  VR+ + KTGKL +  RCTGG  C AQ  E LKHFVSR+A
Sbjct: 419 RSAEARPYEFPKTCPVCGSHAVRERHEKTGKLDSVTRCTGGFICRAQATEHLKHFVSRNA 478

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           F+IEGLG +Q+DFFF++ED +  IR   DIFTL++RQQ S TK+ENI GFG VSV  LY 
Sbjct: 479 FDIEGLGSKQIDFFFENEDASLQIRTAPDIFTLEKRQQQSLTKLENIDGFGKVSVGKLYA 538

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I +RR+I+L RFI++LGIRHVG   A+ LA+ Y +Y  F   +    A + D W  L  
Sbjct: 539 AITERRSIALHRFIYALGIRHVGETTAKLLARSYGTYAAFETAMREAEALSGDAWNDLNA 598

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  +G+++A+AIVEFY+ PRN+  +  L++EV+P      K   S +  K +VFTG+L+K
Sbjct: 599 IEGIGEVVARAIVEFYKEPRNVEVITRLIEEVTPEEAEQPKTAGSPVAGKTVVFTGSLEK 658

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             R +A+     LGA V+  +S+KTDI++ G   GSKL+KA++ GV+ M+E+++L L+
Sbjct: 659 FTRDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKAREFGVQTMDEDEWLALI 716


>gi|209550159|ref|YP_002282076.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|254781399|sp|B5ZWH9|DNLJ_RHILW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|209535915|gb|ACI55850.1| DNA ligase, NAD-dependent [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 718

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/718 (47%), Positives = 492/718 (68%), Gaps = 5/718 (0%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
             +   ++ L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   F
Sbjct: 2   STEGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDRPQISDADYDALKRRNDALEVQF 61

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P+L R    + P  ++G   +++   V H+ P LSL+  ++ ED++ F+  +YRF  +  
Sbjct: 62  PELIRE---DSPSRRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVASVYRFLGRLP 118

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
           D SI FT EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P
Sbjct: 119 DQSIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVP 178

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
            ++E+RGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +
Sbjct: 179 AVVEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAY 238

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             G+ SE+ A  Q++M+Q  +  GFPVN  +++ N+   I+++Y+E+   R  L YDIDG
Sbjct: 239 AWGEMSEMPADTQFDMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDG 298

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKVD   LQ +LG R+RSPRW  +HKF  +QA T +  I+IQ+GRTG LTPVARL+P+
Sbjct: 299 VVYKVDSLELQARLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPI 358

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
            +GG ++TNATLHNEDYIKG+  SG+ +R    DIR GD V+V+RAG+VIP+++D+++ +
Sbjct: 359 TVGGVVVTNATLHNEDYIKGIGNSGERIRPEDHDIREGDTVIVQRAGDVIPQILDVVMEK 418

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  DA+ + FP  CP+C S  VR++N KTGK+ +  RCTGG  C AQ  E LKHFVSR+A
Sbjct: 419 RTADARSYEFPKTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNA 478

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           F+IEGLG +Q+DFFF+ ED +  IR   +IFTL++RQQ S TK+ENI GFG VSV  LY 
Sbjct: 479 FDIEGLGSKQIDFFFEHEDASLQIRTAPEIFTLEKRQQASLTKLENIDGFGKVSVGKLYT 538

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +IN+RR+I+L RFI++LGIRHVG   A+ LA+ Y +Y+ FA  +      + D W  L  
Sbjct: 539 AINERRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFAMAMKEAAPLSGDAWNDLNA 598

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  +G+++A+A+VEFY+ PRN+  +  L++EV+P          S +  K +VFTG+L+K
Sbjct: 599 IEGIGEVVARAMVEFYKEPRNVEVITRLIEEVTPQQAEQPVTTGSPVAGKTVVFTGSLEK 658

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             R +A+     LGA V+  +S+KTDI++ G   GSKL+KA++LGV+ M+E+++L L+
Sbjct: 659 FTRDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716


>gi|327194610|gb|EGE61460.1| DNA ligase (NAD+) protein [Rhizobium etli CNPAF512]
          Length = 718

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/718 (47%), Positives = 493/718 (68%), Gaps = 5/718 (0%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
             +   ++ L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   F
Sbjct: 2   STEGSAVDTLTIEEAAAELERLAKEIAHHDSLYHGKDQPEISDADYDALKRRNDALEVRF 61

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P+L R    + P   +G   +++   V H+ P LSL+  ++ ED++ F+  +YRF  +  
Sbjct: 62  PELIRE---DSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLP 118

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
           D SI FT EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P
Sbjct: 119 DQSIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVP 178

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
            ++E+RGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +
Sbjct: 179 AVVEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAY 238

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             G+ +E+ A  Q+ M+Q  +  GFPVN  +++ N+   I+++Y+E+   R  L YDIDG
Sbjct: 239 AWGEMAEMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDG 298

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKVD   LQ++LG R+RSPRW  +HKF  +QA T +  I+IQ+GRTG LTPVARL+P+
Sbjct: 299 VVYKVDSLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPI 358

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
            +GG ++TNATLHNEDYIKG+  SG+ +R    DIR GD V+V+RAG+VIP+++D+++ +
Sbjct: 359 TVGGVVVTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEK 418

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  DA+ + FP  CP+C S  VR++N KTGK+ +  RCTGG  C AQ  E LKHFVSR+A
Sbjct: 419 RAADARSYEFPKTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNA 478

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           F+IEGLG +Q+DFFF++EDP+  IR   +IFTL++RQQ S TK+ENI GFG VSV  LY 
Sbjct: 479 FDIEGLGAKQVDFFFENEDPSLQIRTAPEIFTLEKRQQDSLTKLENIDGFGKVSVGKLYA 538

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +IN+RR+I+L RFI++LGIRHVG   A+ LA+ Y +Y+ FA  +      + D W  L  
Sbjct: 539 AINERRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGDAWNDLNA 598

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  +G+++A+A+VEFY+ PRN+  +  LL EV+P+         S +  K +VFTG+L+K
Sbjct: 599 IEGIGEVVARAMVEFYKEPRNVEVIGRLLDEVTPAEAEQPVTAGSPVAGKTVVFTGSLEK 658

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             R +A+     LGA V+  +S+KTDI++ G   GSKL+KA++LGV+ M+E+++L L+
Sbjct: 659 FTRDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716


>gi|227822641|ref|YP_002826613.1| NAD-dependent DNA ligase LigA [Sinorhizobium fredii NGR234]
 gi|254781400|sp|C3MEL9|DNLJ_RHISN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|227341642|gb|ACP25860.1| DNA ligase [Sinorhizobium fredii NGR234]
          Length = 717

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/716 (49%), Positives = 493/716 (68%), Gaps = 4/716 (0%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
            +  P+E L+  +A +EL+ L  E++ HD  Y+    P I D++YDALKRR D I   FP
Sbjct: 3   NEKKPVEQLTETEAAEELAFLVTELARHDALYHGQDAPEISDADYDALKRRNDLIEELFP 62

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
            L R    + P  KIG   +L+   V H+ P LSL+  ++ ED R F+  IYRF  K  D
Sbjct: 63  ALIRE---DSPSRKIGAAPSLTFQPVLHARPMLSLDNTFSDEDARDFVAGIYRFLGKLPD 119

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
           +SI FT EPKIDG  +++RYE  K V AA RGDG +GE+V+A IR I  IP+ L  + P+
Sbjct: 120 HSIAFTAEPKIDGLSMSLRYENRKLVTAATRGDGTTGENVTANIRTIRMIPQTLPADAPD 179

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
           ++EVRGE+Y++K+DF ALN EM A GR  Y NPRN ASG LR+L+     +R L FF + 
Sbjct: 180 VVEVRGEIYMAKSDFAALNAEMAAQGRPLYVNPRNTASGSLRQLDAKVTASRKLRFFAYA 239

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G+ S + +  Q+ M++  +  GFPVN  +++ ++   ++ +Y+ ++  R  L YDIDG+
Sbjct: 240 WGEISAMPSDTQFGMVETFKAWGFPVNPLMQRLSSADELLQHYHHIERERPDLDYDIDGV 299

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYKVD   LQ +LG R+RSPRW  +HKF  +QA TRL  IDIQ+GRTG LTPVARLEP+ 
Sbjct: 300 VYKVDRLDLQARLGFRSRSPRWATAHKFPAEQAFTRLKGIDIQVGRTGALTPVARLEPIT 359

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG ++TNATLHNEDYI+G+  SG+ +R GRDIR+GD V+V+RAG+VIP++VD++++ER 
Sbjct: 360 VGGVVVTNATLHNEDYIRGIGNSGEPIREGRDIRIGDMVIVQRAGDVIPQIVDVVMDERA 419

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             A+P+ FP+ CP+C S  VRD+N KTGK+ A  RCTGG  C AQ +E LKHFVSR AF+
Sbjct: 420 EGAEPYRFPTTCPVCGSHAVRDINEKTGKVDAVRRCTGGFVCRAQAIEHLKHFVSRHAFD 479

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGLG +Q++FFF+SEDP  SIR   DIFTL+RRQ+ S TK+ENI GFG VSV  LY++I
Sbjct: 480 IEGLGSKQIEFFFESEDPTLSIRTAPDIFTLERRQEASLTKLENIEGFGKVSVRKLYEAI 539

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           N RR I+L RFI++LGIRHVG   A+ LA+ Y +Y++F   + +  +   D W  L  + 
Sbjct: 540 NARREIALHRFIYALGIRHVGETTAKLLARSYGTYEHFRAAMVDAGSLAGDAWNELNSIE 599

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G+++A+AIVEFY+ PRN+  V  LL+EV P       +  S +  K +VFTG+L+K+ 
Sbjct: 600 GIGEVVARAIVEFYKEPRNLKVVSDLLEEVRPESAETRVSTDSPVAGKTVVFTGSLEKMT 659

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+     LGA V+  +S+KTDI++ G   GSKL+KA++LGV+ M+E+++L L+
Sbjct: 660 RDEAKAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 715


>gi|222149123|ref|YP_002550080.1| NAD-dependent DNA ligase LigA [Agrobacterium vitis S4]
 gi|254781248|sp|B9JY41|DNLJ_AGRVS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221736108|gb|ACM37071.1| DNA ligase [Agrobacterium vitis S4]
          Length = 719

 Score =  643 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/716 (47%), Positives = 478/716 (66%), Gaps = 6/716 (0%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           LIP+E LS EQA +EL  L   I++HD  Y+   +P I D++YDALKRR DAI   FP L
Sbjct: 5   LIPVEDLSEEQAGQELIRLAAAIAHHDALYHGKDQPEISDADYDALKRRNDAIEARFPTL 64

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            RS   + P  ++G        ++TH+ P LSL+  ++ ED+  F+  +YRF     DNS
Sbjct: 65  VRS---DSPSQRVGAAPAGIFSQITHARPMLSLDNTFSDEDVADFVASVYRFLGVMPDNS 121

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE  K   AA RGDG +GE+V+A I  I  IP  L  + P+++
Sbjct: 122 IAFTAEPKIDGLSMSIRYEHRKLKTAATRGDGTTGENVTANILTIKEIPTELPADAPDVV 181

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFLALN +M A GR+ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 182 EVRGEVYMAKSDFLALNAQMEAEGRQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWG 241

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S + A+ Q  M++  +  GFPVN   R+  +   I+++Y E+   R+ L YDIDG+VY
Sbjct: 242 EMSTMPAETQSGMVEAFKRWGFPVNPLTRRLTSVEEIIAHYREIGLQRADLDYDIDGVVY 301

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW  +HKF  +QA T +  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 302 KVDRLDLQARLGFRSRSPRWATAHKFPAEQAFTTVEAIDIQVGRTGALTPVARLEPITVG 361

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           G ++TNATLHN DYI+G+   G+ +R    DIR+GD V+V+RAG+VIP+V+D+++ +R  
Sbjct: 362 GVVVTNATLHNADYIEGIGNGGERIRPEGHDIRIGDTVIVQRAGDVIPQVLDVVLEKRPE 421

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            +  + FP  CP+C S  VR+ N KTGKL +  RCTGG  CSAQ  E +KHFVSR+AF+I
Sbjct: 422 TSVKYEFPKTCPVCGSHAVREKNEKTGKLDSVTRCTGGFVCSAQAKEHIKHFVSRNAFDI 481

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSI 542
           EGLG +Q+DFFF+SEDPA  IR   DIFTL++RQ+ S+ T++ENI GFG VSV  L+D+I
Sbjct: 482 EGLGTKQVDFFFESEDPALMIRTAPDIFTLKQRQEASSLTRLENIDGFGRVSVRKLFDAI 541

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           + RR I+L RFIF+LGIRHVG   A+ LA+ Y SY  FA  +        + W  L  + 
Sbjct: 542 DARREIALNRFIFALGIRHVGETTAKLLARSYGSYAAFADAMQEAAPKFGEAWNELNSID 601

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G+++A ++VEF++ PRN+  V  LLKEV+P          S +  K +VFTG+L++  
Sbjct: 602 GIGEVVAASMVEFFKEPRNLEVVSRLLKEVTPLDAEAVTASDSPVAGKTVVFTGSLERFT 661

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+     LGA V+  +S+KTD ++ G   GSKL+KA+++GV +M E+++L L+
Sbjct: 662 RDEAKARAESLGAKVAGSVSKKTDYLVAGPGAGSKLDKAREVGVTVMTEDEWLALI 717


>gi|254502790|ref|ZP_05114941.1| DNA ligase, NAD-dependent [Labrenzia alexandrii DFL-11]
 gi|222438861|gb|EEE45540.1| DNA ligase, NAD-dependent [Labrenzia alexandrii DFL-11]
          Length = 725

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/717 (43%), Positives = 466/717 (64%), Gaps = 9/717 (1%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
             I +  L+ E A+ EL  L  EI+ HD  Y+Q   P I D++YDAL+RR  AI   FPD
Sbjct: 14  PDIAVLDLTPEAAKAELERLASEIAEHDRRYHQEDAPTISDADYDALRRRNSAIEARFPD 73

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD- 123
           L  +   +GP  ++G        K+TH +P LSL+  ++ +D+R F+ R+ RF +     
Sbjct: 74  LILA---DGPSAQVGAAPASGFGKITHRVPMLSLDNAFSDDDVRDFVGRVRRFLKFDPLM 130

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
            ++  T EPKIDG  +++RYE GK VYAA RGDG +GE+V+A  + I  IP  L+ ++ +
Sbjct: 131 GALAVTAEPKIDGLSLSLRYEDGKLVYAATRGDGTTGENVTANAKTITDIPHTLAGSVLD 190

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
           ++EVRGEVY++  DF ALN  M+A G K +ANPRNAA+G LR+L      +R L FF + 
Sbjct: 191 VVEVRGEVYMAHKDFEALNARMVANGGKVFANPRNAAAGSLRQLKSEITASRPLRFFAYA 250

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G+ S +    Q  M+ ++   GF +N  +++  T   +++ Y+ ++  R+ L YDIDG+
Sbjct: 251 WGEMSTLPKDTQDGMVAQLAAWGFQINPLMKRCETVEELLAVYHGIEENRAQLDYDIDGV 310

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYKVD   LQ++LG  +RSPRW I+HKF  +QA T L DI+IQ+GRTG LTPVA+LEP+ 
Sbjct: 311 VYKVDRLDLQERLGFVSRSPRWAIAHKFPAEQAWTVLNDIEIQVGRTGALTPVAKLEPIT 370

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG +++NATLHNEDYIKG+   G+ +RGG+D+R GD V ++RAG+VIP++VD+ +++R 
Sbjct: 371 VGGVVVSNATLHNEDYIKGIGQDGEPIRGGKDLRKGDAVKIQRAGDVIPQIVDVDLDKRL 430

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             A+P+ FP+ CP C S  VR+ N KTG+  A  RCTGGL C AQ  E+LKHFVSR+AF+
Sbjct: 431 DGAEPYEFPTRCPRCNSHAVREENEKTGRKDAVRRCTGGLICPAQATEKLKHFVSRNAFD 490

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEG G +Q+D F++ +     +   ADIFTL  R + S TK+ N  G+G VS  NL+++I
Sbjct: 491 IEGFGDKQVDAFYQDD----LVMTAADIFTLAERDKQSLTKLRNREGWGAVSAKNLFEAI 546

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           + RR I L RFIF+LGIRHVG   A+ LA+ Y S+ NF + +     H ++ W  L  + 
Sbjct: 547 DARREIDLHRFIFALGIRHVGEGNAKLLARAYGSWANFYKAMTEASDHGSEAWAELNDID 606

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G I+A A+VEF+    N   ++ALL+EV+P+         S +  K +VFTG+L+++ 
Sbjct: 607 GIGHIVADALVEFFAENHNREQLDALLQEVTPTDAEKIDASGSPVAGKTVVFTGSLERMT 666

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R +A+    + GA VS  +S+KTD+++ G   GSKL+KA +L +++++E+ +  L+ 
Sbjct: 667 RDEAKAMAERFGAKVSGSVSKKTDLVVAGPGAGSKLKKASELEIEVISEDDWFDLVD 723


>gi|307944884|ref|ZP_07660221.1| DNA ligase, NAD-dependent [Roseibium sp. TrichSKD4]
 gi|307771808|gb|EFO31032.1| DNA ligase, NAD-dependent [Roseibium sp. TrichSKD4]
          Length = 721

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 323/720 (44%), Positives = 465/720 (64%), Gaps = 9/720 (1%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           +   + + +EAL+ EQA  EL  L   I+ HD  Y+Q   P I D++YDAL+RR  AI  
Sbjct: 7   VSAFEKLDVEALTSEQAETELERLANAIAKHDKLYHQDDAPAISDADYDALRRRNTAIEA 66

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FPDL R    + P   +G   + +  K+ H +P LSL+  +N ED++ F+ R+ RF + 
Sbjct: 67  RFPDLVRD---DSPSRNVGAAPSEAFSKIEHKVPMLSLDNAFNDEDVQDFVGRVRRFLKF 123

Query: 121 KDD-NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
                ++  T EPKIDG  +++RYE G  VYAA RGDG +GE+V+A  + I  IP+ LS 
Sbjct: 124 DPLMGALAVTAEPKIDGLSLSLRYEAGALVYAATRGDGTTGENVTANAKTISDIPQKLSG 183

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           + P+++E+RGEVY++  DF  LN  M A G K +ANPRNAA+G LR+L      +R L F
Sbjct: 184 DAPDVVEIRGEVYMAHADFQVLNQRMEANGGKVFANPRNAAAGSLRQLKSEITASRPLKF 243

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F +  G  S + A  Q  M+++M+  GF +N  +++  T   +++ Y+ ++  R+TL YD
Sbjct: 244 FAYAWGDMSALPADTQMGMVEQMKVWGFQINPLMKRCETVEELLAVYHGIEEDRATLGYD 303

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD   LQ++LG  +RSPRW I+HKF  ++A T L +IDIQ+GRTG LTPVA+L
Sbjct: 304 IDGVVYKVDRLDLQQRLGFVSRSPRWAIAHKFPAEKAYTILNEIDIQVGRTGALTPVAKL 363

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GG +++NATLHNEDYIKG+   G+ +RGG+D+R GD V V+RAG+VIP++VD+ +
Sbjct: 364 EPVTVGGVVVSNATLHNEDYIKGIGQDGEPIRGGKDLRPGDTVQVQRAGDVIPQIVDVDL 423

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ++R   A+PF FPS CP C S  VR+ NPKTG+L A  RCTG L C AQ  ERLKHFVSR
Sbjct: 424 SKRKEGAEPFEFPSVCPRCGSHAVREENPKTGRLDAVRRCTGALICPAQATERLKHFVSR 483

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           +AF+IEG G +Q+D FF        ++  ADIFTL+ R + S TK+ N  G+G VS  NL
Sbjct: 484 NAFDIEGFGDKQVDAFFAD----GLVKTAADIFTLEERDKQSLTKLRNREGWGTVSAKNL 539

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           +++IN +RNI L R IF LGIRHVG   A+ LA+ Y S+Q F   +      N + W  L
Sbjct: 540 FEAINAKRNIDLHRLIFGLGIRHVGEGNAKLLARAYGSWQAFYDAMVKAHDKNGEAWEDL 599

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
             +  +G I+A+A+ EF+    N   ++ALL ++SP       +  S +  K +VFTG L
Sbjct: 600 NAIDGIGHIVAEALTEFFAEEHNREQLDALLAQISPKQVEQIDSSGSPVAGKTVVFTGAL 659

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R +A+    +LGA VS  +S+KTD+++ G   GSKL+KAQ L ++++ E+ +  L+
Sbjct: 660 ERMTRDEAKAMAERLGAKVSGSVSKKTDLLVAGPGAGSKLKKAQGLQIEVITEDVWFDLV 719


>gi|325293451|ref|YP_004279315.1| DNA ligase [Agrobacterium sp. H13-3]
 gi|325061304|gb|ADY64995.1| DNA ligase [Agrobacterium sp. H13-3]
          Length = 724

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 342/726 (47%), Positives = 485/726 (66%), Gaps = 12/726 (1%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K Q IP+E L+  +A  EL+ L  E++ HD  Y+    P I D++YDALKRR DAI  
Sbjct: 1   MSKDQ-IPVENLTELEASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEA 59

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           AFP L R+   + P  K+G     +   + H+ P LSL+  ++  DLR F++ +YRF   
Sbjct: 60  AFPALVRA---DSPSKKVGFTPLPTFAPIVHARPMLSLDNTFSEGDLRDFVSSVYRFLGH 116

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             D+SI FT EPKIDG  ++IRYE GK   AA RGDG +GE+V+A I+ I  IP  L  +
Sbjct: 117 LPDDSIAFTAEPKIDGLSMSIRYENGKLKTAATRGDGTTGENVTANIKTIKEIPNQLPAD 176

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P+++EVRGEVY++K+DF+ALN +M A G++ Y NPRN ASG LR+ +      R L FF
Sbjct: 177 VPDVVEVRGEVYMAKSDFMALNAQMEADGKQTYVNPRNTASGSLRQFDANVTAKRKLRFF 236

Query: 240 VHGLGKT-----SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            + LG+          A  QY +++K R  GFPVN  +++  +   ++ +YNE+   R  
Sbjct: 237 AYALGEVSNGGQPTRIADTQYGIVEKFREWGFPVNPLMKRFTSAEQLLEHYNEIGVARPD 296

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L YDIDG+VYKVD   LQ++LG R+RSPRW  +HKF  +QA T + +I+IQ+GRTG LTP
Sbjct: 297 LDYDIDGVVYKVDRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALTP 356

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKV 413
           VARL P+ +GG ++TNATLHN DYI+G+  SG+ +R    DIR+GD V+V+RAG+VIP+V
Sbjct: 357 VARLTPITVGGVVVTNATLHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQV 416

Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
           +D+++ +R  +A  ++FP  CP+C S  VR+ N KTGKL +  RCTGG  C AQ +E LK
Sbjct: 417 LDVLLEKRPAEAVKYAFPEKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAVEHLK 476

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGD 532
           HFVSR+AF+IEGLG +Q+DFFF+SEDPA SI+   DIFTL+ RQ+ S  TK+ENI GFG 
Sbjct: 477 HFVSRNAFDIEGLGSKQIDFFFESEDPALSIKTAPDIFTLKARQEASHLTKLENIDGFGK 536

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
           VSV  L+D+I+ RR I L R IF+LGIRHVG   A+ LA+ Y +Y++F + +       +
Sbjct: 537 VSVKKLFDAIDARREIDLHRLIFALGIRHVGETTAKLLARSYGTYEHFEEAMKAAADPAS 596

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
           D W  L  +  +G+++A+AI+EFY+ PRN+  ++ L++E+ P          S +  K +
Sbjct: 597 DAWAELNSIDGIGEVVARAIIEFYKEPRNLDVIDRLIRELRPKEAEKPSTEGSPVAGKTV 656

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           VFTG+L+K  R +A+     LGA V+  +S+KTDI++ G   GSKL KA +LGV+ M+E+
Sbjct: 657 VFTGSLEKFTRDEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLAKAAELGVQTMDED 716

Query: 713 QFLFLL 718
           ++L L+
Sbjct: 717 EWLALI 722


>gi|15889366|ref|NP_355047.1| NAD-dependent DNA ligase LigA [Agrobacterium tumefaciens str. C58]
 gi|166215388|sp|A9CIB3|DNLJ_AGRT5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|15157212|gb|AAK87832.1| DNA ligase [Agrobacterium tumefaciens str. C58]
          Length = 724

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 345/726 (47%), Positives = 484/726 (66%), Gaps = 12/726 (1%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K Q IP+E L+  +A  EL+ L  E++ HD  Y+    P I D++YDALKRR DAI  
Sbjct: 1   MSKDQ-IPVENLTELEASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEA 59

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           AFP L R+   + P  K+G     +   + H+ P LSL+  ++ EDLR F++ +YRF   
Sbjct: 60  AFPALVRA---DSPSKKVGFTPLPTFAPIVHARPMLSLDNTFSEEDLRDFVSSVYRFLGH 116

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             D+SI FT EPKIDG  ++IRYE  K   AA RGDG +GE+V+A IR I  IP  L  +
Sbjct: 117 LPDDSIAFTAEPKIDGLSMSIRYENRKLKTAATRGDGTTGENVTANIRTIKEIPNELPAD 176

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P+++EVRGEVY++K+DFLALN +M A G++ Y NPRN ASG LR+L+      R L FF
Sbjct: 177 APDVVEVRGEVYMAKSDFLALNAQMEADGKQTYVNPRNTASGSLRQLDANVTAKRKLRFF 236

Query: 240 VHGLGKTSE-----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            + LG+ S        A  QY +++K R  GFPVN  +++  +   ++ +YNE+   R  
Sbjct: 237 AYALGEVSNGGQPARIADTQYGIVEKFREWGFPVNPLMKRFTSAQQLLEHYNEIGVARPD 296

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L YDIDG+VYKVD   LQ++LG R+RSPRW  +HKF  +QA T + +I+IQ+GRTG LTP
Sbjct: 297 LDYDIDGVVYKVDRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALTP 356

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKV 413
           VARL P+ +GG ++TNATLHN DYI+G+  SG+ +R    DIR+GD V+V+RAG+VIP+V
Sbjct: 357 VARLTPITVGGVVVTNATLHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQV 416

Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
           +D+++ +R   A  + FP  CP+C S  VR+ N KTGKL +  RCTGG  C AQ +E LK
Sbjct: 417 LDVLLEKRAAGAAKYVFPEKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAVEHLK 476

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGD 532
           HFVSR+AF+IEGLG +Q+DFFF+S+DPA SI+   DIFTL+ RQ+ S  TK+ENI GFG 
Sbjct: 477 HFVSRNAFDIEGLGTKQIDFFFESDDPALSIKTAPDIFTLKARQEASHLTKLENIDGFGK 536

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
           VSV  L+D+I+ RR I L R IF+LGIRHVG   A+ LA+ Y +Y++F + +       +
Sbjct: 537 VSVKKLFDAIDARRAIDLHRLIFALGIRHVGETTAKLLARSYGTYEHFEKAMKAAADPAS 596

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
           D W  L  +  +G+++A+AI+EFY+ PRN+  ++ L++E+ P          S +  K +
Sbjct: 597 DAWAELNSIDGIGEVVARAIIEFYKEPRNLDVIDRLIRELQPKEAEKPSTEGSPVAGKTV 656

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           VFTG+L+K  R +A+     LGA V+  +S+KTDI++ G   GSKL KA +LGV+ M+E+
Sbjct: 657 VFTGSLEKFTRDEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLAKATELGVQTMDED 716

Query: 713 QFLFLL 718
           ++L L+
Sbjct: 717 EWLALI 722


>gi|192292401|ref|YP_001993006.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris TIE-1]
 gi|254781404|sp|B3QFL8|DNLJ_RHOPT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|192286150|gb|ACF02531.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris TIE-1]
          Length = 715

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 304/727 (41%), Positives = 448/727 (61%), Gaps = 27/727 (3%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K +    I  L+  +A+ EL  L  EI  HD  YYQ   P I D++YDAL+RR +AI   
Sbjct: 4   KTKPAPDIATLTKPKAKVELMRLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQK 63

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L  +   + P   +G        KV H++P LSL   +  +++ +F+ R+ RF +  
Sbjct: 64  FPELVNA---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVAEFVERVQRFLRLD 120

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
           D  +I    EPKIDG  +++RYE G+ V AA RGDG +GEDV+A +R I  +P  L    
Sbjct: 121 DVPAI--VAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGKH 178

Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFF 239
            P   E+RGEVY+ K DFLALN      G   +ANPRN+A+G LR+ +     +R L FF
Sbjct: 179 IPAACELRGEVYMLKQDFLALNKRQEEAGETVFANPRNSAAGSLRQKDVLVTASRPLKFF 238

Query: 240 VHGLGK--TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            +  G+  T  +    Q++MLQ +   GF VN  +   ++    +++Y  +   R++LPY
Sbjct: 239 AYAWGEMSTYPMDEPTQHKMLQWLDHAGFVVNPEITLCHSVEDALAFYRRIGEKRASLPY 298

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+VYKVD    Q++LG  +RSPRW I+HKFA +QA+T L  IDIQ+GRTG LTPVAR
Sbjct: 299 DIDGVVYKVDRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVAR 358

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           L+PV +GG ++ NATLHNEDYI+G+   G+ +R G DIR GD V+V+RAG+VIP++V ++
Sbjct: 359 LQPVTVGGVVVQNATLHNEDYIRGIGNDGEPIRDGVDIREGDTVVVQRAGDVIPQIVSVV 418

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + +R   A+P+ FP  CP+C S  VR+         A  RCTG L C AQ +ERLKHFVS
Sbjct: 419 MQKRPAGAEPYHFPHKCPVCGSHAVREEGE------AVWRCTGALICPAQAVERLKHFVS 472

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R AF+I+GLG++Q++ F +       ++ PADIFTL+ R      K+E + G+G+ SV N
Sbjct: 473 RLAFDIDGLGEKQIELFHER----GWVQEPADIFTLKAR--NDQLKLEQLEGYGETSVRN 526

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH------N 591
           L+ +I+ RR I L R IF+LGIRHVG   A+ LA++Y +   F   +             
Sbjct: 527 LFAAIDARRTIELHRLIFALGIRHVGEGNAKLLARHYGTLDAFLSAMRAAADAQTEEGNT 586

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651
           ++ +  L  +  +GD++A+A+VEF+   RNI A++ALL E++  +   +    + +  K 
Sbjct: 587 SEAYQDLDNIAGIGDVVAEAVVEFFAEERNIKALDALLAELTEVLPAEQARRDTAVAGKT 646

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +VFTG+L K  R +A+    +LGA V+  +S+KTD ++ G++ GSKL KA+ LGV ++ E
Sbjct: 647 VVFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLTE 706

Query: 712 EQFLFLL 718
           +++L L+
Sbjct: 707 DEWLALI 713


>gi|118590881|ref|ZP_01548281.1| NAD-dependent DNA ligase LigA [Stappia aggregata IAM 12614]
 gi|118436403|gb|EAV43044.1| NAD-dependent DNA ligase LigA [Stappia aggregata IAM 12614]
          Length = 750

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 315/714 (44%), Positives = 463/714 (64%), Gaps = 9/714 (1%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
             I+AL+ E+A+ EL  L  EI+ HD  Y+Q   P+I D++YDAL+RR  +I   FP+L 
Sbjct: 42  TDIDALTQEEAQVELKRLAAEIAEHDRRYHQEDAPVISDADYDALRRRNASIEARFPNLI 101

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NS 125
                +GP  ++G        K+TH +P LSL+  +N +D+R F+ R+ RF +      +
Sbjct: 102 LD---DGPSAQVGAAPASGFGKITHRVPMLSLDNAFNDDDVRDFVGRVRRFLKYDPLMGA 158

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           +  T EPKIDG  +++RYE G  VYAA RGDG +GE+V+   + I  IP  LS  +P+++
Sbjct: 159 LAVTAEPKIDGLSLSLRYENGTLVYAATRGDGTTGENVTENAKTIKDIPEKLSGTVPDVV 218

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++  DF ALN+ M A G K +ANPRNAA+G LR+L      +R L FF +  G
Sbjct: 219 EVRGEVYMAHKDFQALNERMAANGGKVFANPRNAAAGSLRQLKSEITASRPLRFFAYAWG 278

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S +    Q+ M++++   GF +N  +R+  T   ++  Y+ ++  R+ L YDIDG+VY
Sbjct: 279 EMSALPEDTQFGMVKQLEAWGFQINPLMRRCETVEELLGVYHGIEESRAQLDYDIDGVVY 338

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ++LG  +RSPRW I+HKF  +QA T L DI+IQ+GRTG LTPVA+LEP+ +G
Sbjct: 339 KVDRLDLQERLGFVSRSPRWAIAHKFPAEQAYTVLNDIEIQVGRTGALTPVAKLEPITVG 398

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++NATLHNEDYIKG+   G+ +RGG+D+R+GD V ++RAG+VIP++VDI +++R   
Sbjct: 399 GVVVSNATLHNEDYIKGIGQDGEPIRGGKDLRIGDTVKIQRAGDVIPQIVDIDLDKRPEG 458

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+ F FP+ CP C S  VR+   KTG+  A  RCTGGL C AQ  E+LKHFVSR+AF+IE
Sbjct: 459 AEAFEFPTICPACGSHAVREEKEKTGRRDAVRRCTGGLICPAQATEKLKHFVSRNAFDIE 518

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G G +Q+D F+K       +  PADIFTL+ R + S TK+ N  G+G VS  NL+++IN 
Sbjct: 519 GFGDKQVDAFYKE----GLVMAPADIFTLEERDKRSLTKLRNREGWGAVSAKNLFEAINA 574

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           RR I L RFIF+LGIRHVG   A+ LA+ Y S+  F   +       ++ W  L  +  +
Sbjct: 575 RREIDLHRFIFALGIRHVGEGNAKLLARAYGSWAAFYAAMKAAHDTESEAWAELNDIDGI 634

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G I+A+A+ EF+    N+  ++ALL EVSP          S +  K +VFTG+L+++ R 
Sbjct: 635 GHIVAEALAEFFAEQHNLDQLDALLVEVSPKDAEKINASGSPVAGKTVVFTGSLERMTRD 694

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A+    + GA  +  +S+KTD+++ G   GSKL+KAQ+L +++++E+ +  L+
Sbjct: 695 EAKAMAERFGAKTAGSVSKKTDLVVAGPGAGSKLKKAQELEIEVISEDDWFDLV 748


>gi|116253034|ref|YP_768872.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. viciae
           3841]
 gi|123261370|sp|Q1ME47|DNLJ_RHIL3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|115257682|emb|CAK08780.1| putative DNA ligase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 718

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 344/720 (47%), Positives = 494/720 (68%), Gaps = 6/720 (0%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M       ++ L+IE+A  EL+ L +EI++HD  Y+   +P I D++YDALKRR DA+  
Sbjct: 1   MPTEGST-VDTLTIEEAAAELARLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEV 59

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP+L R    + P   +G   +++   V H+ P LSL+  ++ ED++ F+  +YRF  +
Sbjct: 60  RFPELIRE---DSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGR 116

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             D SI FT EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   
Sbjct: 117 LPDQSIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKG 176

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P ++E+RGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF
Sbjct: 177 VPAVVEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFF 236

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ SE+ A  Q+ M+Q  +  GFPVN  +++ N+   I+++Y+E+   R  L YDI
Sbjct: 237 AYAWGEMSEMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDI 296

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD   LQ +LG R+RSPRW  +HKF  +QA T + +IDIQ+GRTG LTPVARL 
Sbjct: 297 DGVVYKVDSLELQARLGFRSRSPRWATAHKFPAEQAFTIVENIDIQVGRTGALTPVARLT 356

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           P+ +GG ++TNATLHN DYI+G+  SG+ +R    DIR+GD V+V+RAG+VIP+V+D+++
Sbjct: 357 PITVGGVVVTNATLHNADYIQGIGNSGERIRDDEHDIRIGDTVIVQRAGDVIPQVLDVVM 416

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            +R  +A+P+ FP  CP+C S  VR+ + KTGKL +  RCTGG  C AQ  E LKHFVSR
Sbjct: 417 EKRPAEARPYEFPKTCPVCGSHAVRERHEKTGKLDSVTRCTGGFICRAQATEHLKHFVSR 476

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           +AF+IEGLG +Q+DFFF++ED +  IR   DIFTL++RQQ S TK+ENI GFG VSV  L
Sbjct: 477 NAFDIEGLGSKQIDFFFENEDASLQIRTAPDIFTLEKRQQQSLTKLENIDGFGKVSVGKL 536

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           Y +I++RR+I+L RFI++LGIRHVG   A+ LA+ Y +Y+ F   +    A + D W  L
Sbjct: 537 YGAIDERRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFETAMREAEALSGDAWNDL 596

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
             +  +G+++A+AIVEFY+ PRN+  +  LL+EV+P      K   S +  K +VFTG+L
Sbjct: 597 NAIEGIGEVVARAIVEFYKEPRNVEVITRLLEEVTPEEAEQPKTAGSPVAGKTVVFTGSL 656

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +K+ R +A+     LGA V+  +S+KTDI++ G   GSKL+KA++LGV+ M+E+Q+L L+
Sbjct: 657 EKLTRDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDQWLALI 716


>gi|182677699|ref|YP_001831845.1| DNA ligase, NAD-dependent [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|254781257|sp|B2IGH4|DNLJ_BEII9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|182633582|gb|ACB94356.1| DNA ligase, NAD-dependent [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 699

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 300/714 (42%), Positives = 452/714 (63%), Gaps = 21/714 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PIE+LS  QA++E   L ++I+ HD  YYQ   P + D+EYDAL+RR +A+  AFP+L  
Sbjct: 6   PIESLSPAQAKREHRRLGEQITEHDRLYYQEDAPRVSDAEYDALRRRYEALETAFPELVS 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           +E       KIG        K+ H +P LSL  I++ E++ +F+ R+ RF     D  + 
Sbjct: 66  AE---SLTKKIGAAPAEKFAKIIHKVPMLSLANIFSDEEVGEFVARVRRFLGLGADAPLA 122

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            + EPKIDG   ++RYE G  V AA RGDG+ GEDV+A +R I  IP  L  + PEI+EV
Sbjct: 123 ISAEPKIDGLSCSLRYEGGYLVQAATRGDGYEGEDVTANVRTIQEIPHQLQGHAPEILEV 182

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY++  DF ALN+   A G+  +ANPRN+A+G LR+L+P     R L+FF +  G+ 
Sbjct: 183 RGEVYMTHADFAALNERQEAAGKTIFANPRNSAAGSLRQLDPKVTAGRPLHFFAYAWGEA 242

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE  A  Q  M+   +  G PVN  ++  ++   ++++Y+++++ R+ L YDIDG+VYKV
Sbjct: 243 SEEPADTQMGMVTAFKAFGLPVNPLMQLCHSAEDLIAHYHDIEARRALLDYDIDGVVYKV 302

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQK+LG  +R+PRW  +HKF  ++A T L DI+IQ+GRTG LTPVARLEP+ +GG 
Sbjct: 303 NSIALQKRLGFVSRAPRWATAHKFPAEKAVTLLRDIEIQVGRTGALTPVARLEPITVGGV 362

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNED I             +DIR+GD V+++RAG+VIP+++  I+++R  DAQ
Sbjct: 363 VVSNATLHNEDEIAR-----------KDIRIGDMVMIQRAGDVIPQILGPILDKRPQDAQ 411

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP+C S  +R+++PKTG      RCTGGL C+AQ +ERLKHF SR+AF+IEGL
Sbjct: 412 PYEFPQVCPVCGSAAIREIDPKTGTADVVRRCTGGLVCAAQVVERLKHFASRNAFDIEGL 471

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++ F+        I  P DIFTLQ R   S  K+++  G+G+ SV NL+ +I  RR
Sbjct: 472 GDKQIEQFYHD----GLIHTPVDIFTLQERDARSLKKLKDREGYGETSVRNLFQAIEARR 527

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +I + RFI++LGIRHVG   AR  A+ + ++      + +     +++   L  V   G 
Sbjct: 528 HIPVNRFIYALGIRHVGETNARRAARAFGTFDALR-AVASRAEEGSEERSELTNVEGFGP 586

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A+AI +F+    N   ++ LL++V+P          S +  K +VFTG L+ + R +A
Sbjct: 587 VVAEAIFDFFHEQHNQDVLDGLLEQVTPEP-MEAVAKESPVAGKTVVFTGALEHMTREEA 645

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +    +LGA V+  +S+KTD+++ G   GSKL KA +L ++ ++EE +L L+ +
Sbjct: 646 KAQAERLGAKVAGSVSKKTDLVVAGPGAGSKLAKAAELNIETISEEDWLKLVGE 699


>gi|254470147|ref|ZP_05083551.1| DNA ligase, NAD-dependent [Pseudovibrio sp. JE062]
 gi|211960458|gb|EEA95654.1| DNA ligase, NAD-dependent [Pseudovibrio sp. JE062]
          Length = 722

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 317/716 (44%), Positives = 466/716 (65%), Gaps = 5/716 (0%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            IEAL+ E+A  EL  L + I+ +D+ Y+    PI+ D+ YD L+RR  A+   FP+L R
Sbjct: 10  DIEALNAEEAALELERLARLIAEYDEAYHTQDAPIVDDATYDGLRRRNAALEAKFPELVR 69

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSI 126
           +   + P N++GG +     K+TH++P LSL+  ++ ED++ FI ++ RF +      ++
Sbjct: 70  A---DSPSNRVGGAVAEGFGKITHAVPMLSLDNAFSDEDVQDFIGKVRRFLKYDPLMGAL 126

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
             T EPKIDG  +++RYE GK VYAA RGDG +GE+V+A    I  IP+ L   +P+++E
Sbjct: 127 AVTAEPKIDGLSLSLRYESGKLVYAATRGDGATGENVTANALTIQDIPQELPAGVPDVVE 186

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+S  DF ALN  M A G K +ANPRNAA+G LR+LNP    TR L FF +  G 
Sbjct: 187 VRGEVYMSHADFAALNARMEANGGKVFANPRNAAAGSLRQLNPEITKTRPLKFFAYAWGD 246

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            SE+ A  Q  M++     GF +N  +++  T   ++  Y+ ++  RS L YDIDG+VYK
Sbjct: 247 MSEVPADTQMGMVELFGAWGFQINPLMKRCETVEALLKVYHGIEEDRSGLGYDIDGVVYK 306

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD   LQ +LG  +RSPRW I+HKF  ++A T L  I+IQ+GRTG LTPVA+LEPV +GG
Sbjct: 307 VDRLDLQGRLGFVSRSPRWAIAHKFPAERAFTTLNAIEIQVGRTGALTPVAKLEPVTVGG 366

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYIKG+   G+ +R  +D+RVGD V+++RAG+VIP++VD+ +++R  D 
Sbjct: 367 VVVSNATLHNEDYIKGIGQDGESIRDSKDLRVGDTVIIQRAGDVIPQIVDVDLSKRAEDV 426

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           QP+ FP+ CP+C S  +R+ NP +GK+ A  RCTGGL C AQ +E+LKHFVSR+AF+IEG
Sbjct: 427 QPYEFPTECPVCNSHAIRETNPNSGKVDAVRRCTGGLICPAQAVEKLKHFVSRNAFDIEG 486

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++Q++ F++ +     IR PADIFTL  R + S  K+ +  GFG VS   L+++I+ +
Sbjct: 487 LGEKQMEAFYEYDMDKGGIRTPADIFTLAERDKVSLNKLRSREGFGAVSARKLFEAIDSK 546

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R I L R IF LGIRHVG   A+ LA+ Y S+Q F   +       ++ +  L  +  +G
Sbjct: 547 RQIELNRVIFGLGIRHVGEGNAKLLARAYSSWQGFYDAMIAATDTTSEAYRELNDIDGIG 606

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +A A+VEF+    N+ A+ AL+++++P          S +  K LVFTG+L+++ R +
Sbjct: 607 GTVANALVEFFAEEHNLTALAALMEQITPLDVVVADTSGSPVAGKTLVFTGSLERMSRDE 666

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           A+     LGA VS  +S+KTD++I G   GSKL KAQ LG+ +++E+ +  L+   
Sbjct: 667 AKARAESLGAKVSGSVSKKTDLVIAGPKAGSKLTKAQSLGIDVISEDDWFELVGDQ 722


>gi|316933200|ref|YP_004108182.1| NAD-dependent DNA ligase [Rhodopseudomonas palustris DX-1]
 gi|315600914|gb|ADU43449.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris DX-1]
          Length = 715

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 305/728 (41%), Positives = 450/728 (61%), Gaps = 27/728 (3%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           +KK     I  L+  +A+ EL  L   I  HD  YYQ   P I D++YDAL+RR +AI  
Sbjct: 3   VKKNPAPDIATLTKAKAKVELMRLRLVIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQ 62

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP+L      + P   +G        KV H++P LSL   +  +++ +F  R+ RF + 
Sbjct: 63  KFPELV---SASSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVAEFALRVQRFLKL 119

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
            D  +I    EPKIDG  +++RYE G+ V AA RGDG +GEDV+A +R I  +P  L   
Sbjct: 120 DDVPAI--VAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGK 177

Query: 181 I-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
             P   E+RGEVY+ K DFLALN      G   +ANPRN+A+G LR+ +     +R L F
Sbjct: 178 HIPAACELRGEVYMLKQDFLALNKRQEEAGETVFANPRNSAAGSLRQKDVAVTASRPLKF 237

Query: 239 FVHGLGKT--SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
           F +  G+     +    Q++MLQ +  +GF VN  +R  +T   I+++Y E+   R++LP
Sbjct: 238 FAYAWGEMSDYPMEEPTQHKMLQWLDHVGFVVNPLIRPCHTVEEILAFYREIGEQRASLP 297

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           YDIDG+VYKVD    Q++LG  +RSPRW I+HKFA +QA+T L  IDIQ+GRTG +TPVA
Sbjct: 298 YDIDGVVYKVDRLDYQERLGFISRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGAMTPVA 357

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
           RL+PV +GG ++ NATLHNEDYIKG+   G  +R G DIR GD V+V+RAG+VIP++V +
Sbjct: 358 RLQPVTVGGVVVQNATLHNEDYIKGIGNDGSPLRDGVDIREGDTVVVQRAGDVIPQIVSV 417

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           ++++R   A+P+ FP  CP+C S  VR+         A  RCTG L C AQ +ERLKHFV
Sbjct: 418 VLDKRPAGAEPYHFPHKCPVCGSHAVREEGE------AVWRCTGALICPAQAVERLKHFV 471

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR AF+I+GLG++Q++ F +       ++ PADIFTL+ R   +  K+E + G+G+ SV 
Sbjct: 472 SRLAFDIDGLGEKQIELFHER----GWVQEPADIFTLKAR--NAELKLEQLEGYGETSVR 525

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH------ 590
           NL+ +I+ RR I L R +F+LGIRHVG   A+ LA++Y +   F   +            
Sbjct: 526 NLFAAIDARRTIELHRLVFALGIRHVGEGNAKLLARHYGTLDAFLTAMRAAADAQTEEGN 585

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
            ++ +  L  +  +GD++A+A+VEF+   RN+ A++ALL E++  +   +    + +  K
Sbjct: 586 TSEAYQDLDNIAGIGDVVAEAVVEFFAEERNVKALDALLAELTEVLPAEQARRDTAVAGK 645

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +VFTG+L K  R +A+    +LGA V+  +S+KTD ++ G++ GSKL KA+ LGV ++ 
Sbjct: 646 TVVFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLT 705

Query: 711 EEQFLFLL 718
           E+++L L+
Sbjct: 706 EDEWLALI 713


>gi|166216284|sp|Q6N423|DNLJ_RHOPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 715

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 302/727 (41%), Positives = 448/727 (61%), Gaps = 27/727 (3%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K +    I  L+  +A+ EL  L  EI  HD  YYQ   P I D++YDAL+RR +AI   
Sbjct: 4   KTKPAPDIATLTKPKAKVELMRLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQK 63

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L  +   + P   +G        KV H++P LSL   +  +++ +F  R+ RF +  
Sbjct: 64  FPELVNA---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVAEFALRVQRFLKLD 120

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
           D  +I    EPKIDG  +++RYE G+ V AA RGDG +GEDV+A +R I  +P  L    
Sbjct: 121 DVPAI--VAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGKH 178

Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P   E+RGEVY+ K DFLALN          +ANPRN+A+G LR+ + T   +R L FF
Sbjct: 179 IPATCELRGEVYMLKQDFLALNKRQEEANETVFANPRNSAAGSLRQKDVTVTASRPLKFF 238

Query: 240 VHGLGKT--SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            +  G+     +    Q++MLQ +   GF VN  +   ++    +++Y  +   R++LPY
Sbjct: 239 AYAWGEMSDYPMEEPTQHKMLQWLDHAGFVVNPEITLCHSVEDALAFYRRIGEKRASLPY 298

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+VYKVD    Q++LG  +RSPRW I+HKFA +QA+T L  IDIQ+GRTG +TPVAR
Sbjct: 299 DIDGVVYKVDRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGAMTPVAR 358

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           L+PV +GG ++ NATLHNEDYIKG+   G+ +R G DIR GD V+V+RAG+VIP++V ++
Sbjct: 359 LQPVTVGGVVVQNATLHNEDYIKGIGNDGEPIRDGVDIREGDTVVVQRAGDVIPQIVSVV 418

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + +R   A+P+ FP  CP+C S  VR+         A  RCTG L C AQ +ERLKHFVS
Sbjct: 419 MEKRPAGAEPYHFPHKCPVCGSHAVREEGE------AVWRCTGALICPAQAVERLKHFVS 472

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R AF+I+GLG++Q++ F +       ++ PADIFTL+ R   +  K+E + G+G+ SV N
Sbjct: 473 RLAFDIDGLGEKQIELFHER----GWVQEPADIFTLKAR--NAELKLEQLEGYGETSVRN 526

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH------N 591
           L+ +I+ RR+I L R +F+LGIRHVG   A+ LA++Y +   F   +             
Sbjct: 527 LFAAIDARRSIELHRLVFALGIRHVGEGNAKLLARHYGTLDAFLSAMRAAADAQTEEGNT 586

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651
           ++ +  L  +  +GD++A+A+VEF+   RNI A++ALL E++  +   +    + +  K 
Sbjct: 587 SEAYQDLDNIAGIGDVVAEAVVEFFAEERNIKALDALLAELTEVLPAEQARRDTAVAGKT 646

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +VFTG+L K  R +A+    +LGA V+  +S+KTD ++ G++ GSKL KA+ LGV ++ E
Sbjct: 647 VVFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLTE 706

Query: 712 EQFLFLL 718
           +++L L+
Sbjct: 707 DEWLALI 713


>gi|75675255|ref|YP_317676.1| NAD-dependent DNA ligase [Nitrobacter winogradskyi Nb-255]
 gi|123773282|sp|Q3STR7|DNLJ_NITWN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|74420125|gb|ABA04324.1| NAD-dependent DNA ligase [Nitrobacter winogradskyi Nb-255]
          Length = 716

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 307/726 (42%), Positives = 459/726 (63%), Gaps = 22/726 (3%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K +   P+++L+  QAR E   L  EI  H++ YYQ   P + D+ YDAL+RR +AI   
Sbjct: 4   KSKTPPPVDSLTRSQARVEHKRLALEIETHNERYYQQDAPTVSDATYDALQRRLEAIEAR 63

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FPDL  +   + P   +G        KV H++P LSL   ++  ++ +F+ RI RF +  
Sbjct: 64  FPDLVTA---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFSDAEVAEFVERIRRFLKLG 120

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
            D+      EPKIDG  +++RYE G  V AA RGDG +GEDV+A +R I  +P  L+ + 
Sbjct: 121 ADDMPAIVAEPKIDGLSLSLRYENGDLVRAATRGDGFTGEDVTANVRTIADVPHKLNGHN 180

Query: 182 PEI-IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
                E+RGEVY+ K DFLALN +    G   +ANPRN+A+G LR+ + +   +R L FF
Sbjct: 181 IPTACELRGEVYMLKEDFLALNKKQQEAGDTVFANPRNSAAGSLRQKDVSITASRPLKFF 240

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ ++  A+ Q +ML+ +R +GF VN  ++  ++   ++++Y  +   R+TL YDI
Sbjct: 241 AYAWGEMTDRPAETQNDMLEWLRDVGFIVNPLIQLCHSVDEVLAFYRRIGEQRATLGYDI 300

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD    Q++LG  +RSPRW I+HKFA +QA T L  IDIQ+GRTG +TPVARLE
Sbjct: 301 DGVVYKVDRLDWQERLGFVSRSPRWAIAHKFAAEQAMTILRGIDIQVGRTGAMTPVARLE 360

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG ++ NATLHNEDYI+GL   G+ +R G D+R+GD V+V+RAG+VIP+VV +I+ 
Sbjct: 361 PVTVGGVVVQNATLHNEDYIRGLGNDGQPIRDGIDLRIGDTVVVQRAGDVIPQVVSVIIE 420

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  +A+ + FP  CPIC S  VR+         A  RCTG L C AQ +ERLKHFVSR 
Sbjct: 421 KRPANAKRYEFPDRCPICGSHAVREEGE------AVRRCTGALICPAQAVERLKHFVSRL 474

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+I+GLG++Q+  F+        +  P DIFTLQ R   +  K+ +  G+GDVSV NL+
Sbjct: 475 AFDIDGLGEKQIQEFYDD----GLVMHPVDIFTLQERDARAENKLRDRDGYGDVSVRNLF 530

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------HNND 593
            +I+ RR I L R IF+LGIRHVG   A+ LA++Y S ++F   +    A      ++++
Sbjct: 531 AAIDARRRIELNRLIFALGIRHVGEGNAKLLARHYGSIESFRSAMTEAAAAQTEAGNDSE 590

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653
            +  L  +  +GDI+A A+VEF+  PRN+ A+  LL+E+   +   +    S +  K +V
Sbjct: 591 AYADLTNIGGIGDIVADAVVEFFAEPRNVKALNDLLEEIEV-LPVAQARSDSAVAGKTVV 649

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           FTG+L+K  R +A+    ++GA  S+ +S+KTD+++ G   GSKL+ A++ GVK+++E++
Sbjct: 650 FTGSLEKFTRDEAKASAERVGAKTSSSVSKKTDLVVAGPGAGSKLKDAEKFGVKVISEDE 709

Query: 714 FLFLLQ 719
           +L L++
Sbjct: 710 WLKLIE 715


>gi|154252874|ref|YP_001413698.1| DNA ligase, NAD-dependent [Parvibaculum lavamentivorans DS-1]
 gi|190359267|sp|A7HVV8|DNLJ_PARL1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|154156824|gb|ABS64041.1| DNA ligase, NAD-dependent [Parvibaculum lavamentivorans DS-1]
          Length = 710

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 304/712 (42%), Positives = 448/712 (62%), Gaps = 21/712 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            ++ L++E+A +EL  L  EI  HD  YYQ   P I D+EYD L+RR +AI   +P+L R
Sbjct: 16  DVDHLTLEEAPEELERLAAEIEKHDKLYYQKDAPRISDAEYDTLRRRNEAIEARYPELVR 75

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
               + P +++G +      KV H +P LSL   ++ ED+R F  RI RF   K+++ + 
Sbjct: 76  E---DSPSHRVGAQPADGFGKVVHKVPMLSLSNAFDDEDVRDFALRIRRFLNLKEEDILP 132

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186
            T EPKIDG    +RYEKGKFV  A RGDG  GE+V+  ++ I  IP  L     P+++E
Sbjct: 133 ITAEPKIDGLSAALRYEKGKFVMGATRGDGREGENVTENLKTIGDIPAELKGKNIPDVVE 192

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+S  DF ALN+     G+  +ANPRNAA+G LR+L+     +R L FF +  G+
Sbjct: 193 VRGEVYMSHEDFAALNERQREAGKPVFANPRNAAAGSLRQLDAKITASRPLRFFAYTWGE 252

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S++ A  Q  ++   R  GF VN    + +T   ++ +Y++++  R+TL YDIDG+VYK
Sbjct: 253 MSDLPADTQSGVMDAFRKWGFTVNPLFGRCDTVEALIDFYHDIEERRATLGYDIDGVVYK 312

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD    Q +LG  +RSPRW ++HKF  +QA T L  I+IQ+GRTG LTPVARL PV +GG
Sbjct: 313 VDRLDWQNRLGFVSRSPRWALAHKFPAEQAMTVLEKIEIQVGRTGALTPVARLTPVTVGG 372

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHN D I+ L            +R GD V+V+RAG+VIP++V ++  +R    
Sbjct: 373 VVVSNATLHNADEIERL-----------GVRPGDTVVVQRAGDVIPQIVRVV-EDRPRGK 420

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F FP  CP C S  VR++NPKTGKL A  RCTGGL C AQ +ERL+HFVSR+AF+IEG
Sbjct: 421 KKFVFPDTCPECGSHAVREVNPKTGKLDAVARCTGGLVCPAQAVERLRHFVSRNAFDIEG 480

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++Q+  FF+       I+ P DIFTL  R   S  K+++  G+G  S   L+D+I+ R
Sbjct: 481 LGEKQIAAFFED----GLIKKPDDIFTLAARDAKSLKKLKDREGWGATSARKLFDAIDAR 536

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R + L+RFIF LGIRHVG   AR LA+ Y +  +F +++       ++ +  L+ +  VG
Sbjct: 537 REVELDRFIFGLGIRHVGETNARLLARSYGTLDHFEEQMRAAADREDEAYAELLSIDGVG 596

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +++A++IV+F+    N   ++ L +     +   ++  SS +  K +VFTG+L+K+ R +
Sbjct: 597 EVLAESIVDFFAEKHNREVLDGLREAGVKGVPLPKQETSSPVAGKTVVFTGSLEKMTRSE 656

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           A+    QLGA V+  +S KTDI++ G + GSKL KA++LG++I++E+Q++ L
Sbjct: 657 AKARAEQLGAKVAGSVSAKTDILVAGADAGSKLAKARELGIEILDEDQWIEL 708


>gi|166216283|sp|Q07PR9|DNLJ_RHOP5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 715

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 307/727 (42%), Positives = 453/727 (62%), Gaps = 25/727 (3%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K + +  +  L+  +A+ EL  L  EI  HD  YYQ   P + D++YDAL+RR + I H 
Sbjct: 4   KSKTVPDVATLTKAKAKVELMRLALEIERHDKAYYQEDAPKVSDADYDALRRRLEEIEHK 63

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L        P  K+G        KV H++P LSL   ++ +++ +F+ R+ RF    
Sbjct: 64  FPELVSGA---SPSQKVGAAPARGFAKVQHAVPMLSLGNAFSDDEVAEFLQRVRRFLNLG 120

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
           D+       EPKIDG  +++RYE+G+ V AA RGDG  GEDV+A +R +  IP  L  N 
Sbjct: 121 DEIP-AIVAEPKIDGLSLSLRYEQGELVRAATRGDGSVGEDVTANVRTLKDIPHTLKGNR 179

Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P   E+RGEVY+ K+DFLALN +    G  P+ANPRN+A+G LR+ +     +R L FF
Sbjct: 180 IPAACELRGEVYMLKSDFLALNKKQEEAGEAPFANPRNSAAGSLRQKDVAITASRPLKFF 239

Query: 240 VHGLGKTSEIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +  G+ S     + Q++ML  +   GF VN  +   ++    + +Y  +   R+ LPYD
Sbjct: 240 AYAWGEFSGETPERTQHDMLGWLDHAGFVVNPEITLCHSVDDALVFYRRIGEERAALPYD 299

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD    Q +LG   R+PRW I+HKFA +QA+T L  I+IQ+GRTG LTPVARL
Sbjct: 300 IDGVVYKVDRLDWQARLGFAGRAPRWAIAHKFAAEQATTILEKIEIQVGRTGALTPVARL 359

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV +GG ++ NATLHNEDYIKG+   G+ +R GRDIRVGD V+++RAG+VIP+VVD+++
Sbjct: 360 APVTVGGVVVQNATLHNEDYIKGVGNDGQPLREGRDIRVGDTVIIQRAGDVIPQVVDVVL 419

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ++R  DA P+ FP  CP+C S  VR+            RCTG L C AQ +ERLKHFVSR
Sbjct: 420 DKRPADAVPYEFPQACPVCGSHAVREDGE------VVRRCTGALICPAQAVERLKHFVSR 473

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            AF+I+GLG++Q++ F +       ++ P DIFTL  + + +T K+E + G+G+ SV NL
Sbjct: 474 LAFDIDGLGEKQIELFHER----GWVKEPVDIFTL--KTRNATLKLEELEGYGETSVRNL 527

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------HNN 592
           + +I+ RR I L R IF+LGIRHVG   A+ LA++Y +   F   +    A      + +
Sbjct: 528 FAAIDARRTIELHRLIFALGIRHVGEGNAKLLARHYGTIDAFLGAMRAAAAGQTEEGNTS 587

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
           + +  L  +  +GDI+A+A+VEF+   RN+ A++ALL E+   +   +    S +  K +
Sbjct: 588 EAYQDLDNIGGIGDIVAEAVVEFFAEERNVEALDALLGELDEVLPAAQVKRDSAVAGKTV 647

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           VFTG+L K  R +A+    +LGA V+  +S+KTD ++ G++ GSKL KA++LGV +++E+
Sbjct: 648 VFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDFVVAGEDAGSKLTKARELGVSVLSED 707

Query: 713 QFLFLLQ 719
           ++L L+Q
Sbjct: 708 EWLALIQ 714


>gi|115524134|ref|YP_781045.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisA53]
 gi|115518081|gb|ABJ06065.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisA53]
          Length = 730

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 307/727 (42%), Positives = 453/727 (62%), Gaps = 25/727 (3%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K + +  +  L+  +A+ EL  L  EI  HD  YYQ   P + D++YDAL+RR + I H 
Sbjct: 19  KSKTVPDVATLTKAKAKVELMRLALEIERHDKAYYQEDAPKVSDADYDALRRRLEEIEHK 78

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L        P  K+G        KV H++P LSL   ++ +++ +F+ R+ RF    
Sbjct: 79  FPELVSGA---SPSQKVGAAPARGFAKVQHAVPMLSLGNAFSDDEVAEFLQRVRRFLNLG 135

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
           D+       EPKIDG  +++RYE+G+ V AA RGDG  GEDV+A +R +  IP  L  N 
Sbjct: 136 DEIP-AIVAEPKIDGLSLSLRYEQGELVRAATRGDGSVGEDVTANVRTLKDIPHTLKGNR 194

Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P   E+RGEVY+ K+DFLALN +    G  P+ANPRN+A+G LR+ +     +R L FF
Sbjct: 195 IPAACELRGEVYMLKSDFLALNKKQEEAGEAPFANPRNSAAGSLRQKDVAITASRPLKFF 254

Query: 240 VHGLGKTSEIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +  G+ S     + Q++ML  +   GF VN  +   ++    + +Y  +   R+ LPYD
Sbjct: 255 AYAWGEFSGETPERTQHDMLGWLDHAGFVVNPEITLCHSVDDALVFYRRIGEERAALPYD 314

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD    Q +LG   R+PRW I+HKFA +QA+T L  I+IQ+GRTG LTPVARL
Sbjct: 315 IDGVVYKVDRLDWQARLGFAGRAPRWAIAHKFAAEQATTILEKIEIQVGRTGALTPVARL 374

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV +GG ++ NATLHNEDYIKG+   G+ +R GRDIRVGD V+++RAG+VIP+VVD+++
Sbjct: 375 APVTVGGVVVQNATLHNEDYIKGVGNDGQPLREGRDIRVGDTVIIQRAGDVIPQVVDVVL 434

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ++R  DA P+ FP  CP+C S  VR+            RCTG L C AQ +ERLKHFVSR
Sbjct: 435 DKRPADAVPYEFPQACPVCGSHAVREDGE------VVRRCTGALICPAQAVERLKHFVSR 488

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            AF+I+GLG++Q++ F +       ++ P DIFTL  + + +T K+E + G+G+ SV NL
Sbjct: 489 LAFDIDGLGEKQIELFHER----GWVKEPVDIFTL--KTRNATLKLEELEGYGETSVRNL 542

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------HNN 592
           + +I+ RR I L R IF+LGIRHVG   A+ LA++Y +   F   +    A      + +
Sbjct: 543 FAAIDARRTIELHRLIFALGIRHVGEGNAKLLARHYGTIDAFLGAMRAAAAGQTEEGNTS 602

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
           + +  L  +  +GDI+A+A+VEF+   RN+ A++ALL E+   +   +    S +  K +
Sbjct: 603 EAYQDLDNIGGIGDIVAEAVVEFFAEERNVEALDALLGELDEVLPAAQVKRDSAVAGKTV 662

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           VFTG+L K  R +A+    +LGA V+  +S+KTD ++ G++ GSKL KA++LGV +++E+
Sbjct: 663 VFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDFVVAGEDAGSKLTKARELGVSVLSED 722

Query: 713 QFLFLLQ 719
           ++L L+Q
Sbjct: 723 EWLALIQ 729


>gi|254488738|ref|ZP_05101943.1| DNA ligase, NAD-dependent [Roseobacter sp. GAI101]
 gi|214045607|gb|EEB86245.1| DNA ligase, NAD-dependent [Roseobacter sp. GAI101]
          Length = 706

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 303/716 (42%), Positives = 441/716 (61%), Gaps = 15/716 (2%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           + I ++ LS +QA +EL  L   ++  +  YY    P I D+EYD LKRR   I   FP 
Sbjct: 3   EHIAVQDLSKDQAAEELRRLSGLLAQANRQYYAEDAPQISDAEYDCLKRRNTEIETRFPS 62

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L R+   + P  +IG   +    KV H +P LSL   +  ED+ +F  RI ++     D 
Sbjct: 63  LKRA---DSPTEQIGATPSEGFSKVRHEVPMLSLGNAFEDEDVVEFDGRIRKYLGLPSDA 119

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + FT EPKIDG  +++RYE G  V AA RGDG  GE+V+A  R I TIP+ L  + P++
Sbjct: 120 DLDFTAEPKIDGLSLSLRYENGLLVQAATRGDGAVGENVTANARTIQTIPKKL-DSAPDV 178

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           IE+RGEVY+S +DF ALN      G K +ANPRNAA+G LR+L+     +R L FF +  
Sbjct: 179 IEIRGEVYMSHDDFDALNARQGERGGKLFANPRNAAAGSLRQLDAEITRSRPLKFFAYAW 238

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G  SE   + Q E +++M  +GF  N      ++   ++  Y ++++ R+TL YDIDG+V
Sbjct: 239 GALSEPLGQTQSEAIKRMENMGFCTNPLTELCSSVAEMIDQYRKIEAQRATLGYDIDGVV 298

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKV++ +LQ++LG R+ +PRW I+HKF  + A T L DI IQ+GRTG L+PVARL+PV +
Sbjct: 299 YKVNDLALQERLGFRSTTPRWAIAHKFPAELAWTTLEDITIQVGRTGALSPVARLKPVTV 358

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG +++NATLHNEDYIKG+D+ G  +R G+DIRVGD V V RAG+VIPK+ D+ ++ R  
Sbjct: 359 GGVVVSNATLHNEDYIKGVDSKGNQIRDGKDIRVGDWVQVYRAGDVIPKIADVDLSRRPS 418

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D+ PF FP+ CP C S  +R+         A  RC GGL C AQ +E+LKHFVSR AF+I
Sbjct: 419 DSVPFDFPTICPECGSDAIREEG------DAVRRCMGGLVCPAQAVEKLKHFVSRAAFDI 472

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG +Q++ F+        I  PADIFTLQ R  +   +++N  G+G+ S T L+ +I+
Sbjct: 473 DGLGAKQVEQFYTD----GWIAEPADIFTLQARYGSGVQQLKNREGWGEKSATKLFQAID 528

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
            +R I L R IF+LGIRHVG   +  +A +Y ++  F   + N    +   W  LI V  
Sbjct: 529 DKRTIPLARLIFALGIRHVGEAASNLIALHYGTWSAFITAMENAREASGPAWDDLISVDG 588

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           VG ++AQ++V  +       +++ L+ E+S           S ++ K +VFTGTL+K+ R
Sbjct: 589 VGQVMAQSLVSTFAQEAERASIDRLVAELSIQDATRPDTQGSPVDGKTVVFTGTLEKMTR 648

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+    +LGA VS  +S KTDI++ G   GSK +KA +LG++I++E+ +L L+ 
Sbjct: 649 AEAKARAERLGAKVSGSVSAKTDILVAGPGAGSKAKKAAELGIEILDEDAWLDLIA 704


>gi|254719452|ref|ZP_05181263.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13]
 gi|265984457|ref|ZP_06097192.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13]
 gi|306839229|ref|ZP_07472046.1| DNA ligase, NAD-dependent [Brucella sp. NF 2653]
 gi|264663049|gb|EEZ33310.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13]
 gi|306405776|gb|EFM62038.1| DNA ligase, NAD-dependent [Brucella sp. NF 2653]
          Length = 719

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 340/724 (46%), Positives = 476/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+    P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYEDGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPSVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLALNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ +R  D
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDTVIVQRAGDVIPQIVDVVLEKRSAD 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A PF FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 AVPFQFPHECPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA SIR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALSIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +                 ++ W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|217979603|ref|YP_002363750.1| DNA ligase, NAD-dependent [Methylocella silvestris BL2]
 gi|254781370|sp|B8ETN6|DNLJ_METSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|217504979|gb|ACK52388.1| DNA ligase, NAD-dependent [Methylocella silvestris BL2]
          Length = 700

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 299/715 (41%), Positives = 447/715 (62%), Gaps = 22/715 (3%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PI+A+++ QAR+E S L  EI+ HD  YY+   P + D+EYD L+RR   +  AFP+LA 
Sbjct: 5   PIDAMTLAQARREHSRLGAEIAAHDARYYREDAPTVSDAEYDRLRRRYGELESAFPELA- 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+    K+G   +    K+ H IP LSL  +++  ++  F+ R+ RF     + S+ 
Sbjct: 64  --SPDSLTKKVGAAPSEKFAKIRHRIPMLSLGNVFSEAEVEDFVARVRRFLGLPTEASLA 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            T EPKIDG   ++R+E G+FV AA RGDG  GEDV+A +R I  IP  L    PE++EV
Sbjct: 122 ITAEPKIDGLSCSLRFENGEFVQAATRGDGFEGEDVTANVRTIAEIPARLKGEPPEVLEV 181

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY++  DF A+N      G+  +ANPRNAA+G LR+L+P     R L+FF +  G+ 
Sbjct: 182 RGEVYMTHADFAAMNVRQQEAGKPLFANPRNAAAGSLRQLDPNITAGRPLHFFAYAWGEI 241

Query: 247 -SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                A  Q  M+   +  G PVN  +   ++   +++ Y  ++  R+ L YDIDG+VYK
Sbjct: 242 LPAPPAGTQMGMVAAFKSYGLPVNPLMVLCHSAEELIAKYRSIEEKRAALGYDIDGVVYK 301

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD   LQ++LG  +RSPRW ++HKF  +QA+T L DI+IQ+GRTG LTPVARL+PV +GG
Sbjct: 302 VDSLVLQERLGFVSRSPRWAVAHKFPAEQATTVLRDIEIQVGRTGALTPVARLDPVTVGG 361

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             + NATLHNED I             +D+R+GD V ++RAG+VIP+V+ +++N+R  +A
Sbjct: 362 VTVANATLHNEDEIAR-----------KDVRIGDTVRIQRAGDVIPQVLGVVLNKRPAEA 410

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +P+ FP  CPIC S  +R+++ KTG      RCTGGL C AQ +ERLKHF SR+A +IEG
Sbjct: 411 KPYVFPDHCPICGSAAIREIDEKTGVADVVRRCTGGLICPAQAIERLKHFASRNALDIEG 470

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F+        I  PADIFTL+ R + +  K+++  G+G+ S  NL+ +I +R
Sbjct: 471 LGDKQIEQFYHD----GLITKPADIFTLEARDKAALKKLKDREGYGETSTRNLFRAIEQR 526

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R  +L RFI++LGIRHVG   AR LA+++ S+    +      A  ++    +  +  VG
Sbjct: 527 RAPALNRFIYALGIRHVGETNARRLARHFGSFSALRE-TGRAAAPGSEARAEINNIEGVG 585

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +++A+A+ +F+  P N  A++ALL  V+P     E    + +  K +VFTG L+++ R +
Sbjct: 586 EVVAEAVADFFAEPHNEEALDALLAHVNPQP-MEEIVSDTPVAGKTVVFTGALERMTRDE 644

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+    +LGA V+A +S+KTD++I G   GSKL KA +LGV+ ++EE +L L+ +
Sbjct: 645 AKAMAERLGAKVAASVSKKTDLVIAGPGAGSKLAKAAELGVETISEEDWLKLVGR 699


>gi|299131914|ref|ZP_07025109.1| DNA ligase, NAD-dependent [Afipia sp. 1NLS2]
 gi|298592051|gb|EFI52251.1| DNA ligase, NAD-dependent [Afipia sp. 1NLS2]
          Length = 706

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 312/725 (43%), Positives = 449/725 (61%), Gaps = 33/725 (4%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           K+ + P+E L+  QA+ EL+ L  EIS HD+ YYQ   P + D++YD L++R  AI   F
Sbjct: 6   KKAVTPVENLTKAQAKVELTRLALEISMHDERYYQKDAPTVSDADYDKLRQRLSAIEERF 65

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P+L      + P  K+G + + +  K+ H++P LSL   ++ ED+ +F TR+ RF     
Sbjct: 66  PELVAK---DSPSQKVGAQPSRAFAKIRHAVPMLSLGNAFSDEDVAEFATRVRRFLNLGA 122

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-I 181
           D  +    EPKIDG  +++RYE G+ V AA RGDG  GEDV+A +R I  +P  L    +
Sbjct: 123 DEPLVIVAEPKIDGLSLSLRYENGELVSAATRGDGFEGEDVTANVRTIKDVPHTLRGKGV 182

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240
           P I EVRGEVY+ + DFLALN +        +ANPRN+A+G LR+ N     +R L FF 
Sbjct: 183 PAICEVRGEVYMMREDFLALNKKQAEADDTIFANPRNSAAGSLRQKNVEVTASRPLKFFA 242

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           +  G+ SE+ A  Q+EM++ +   GF VN  +        +++YY E+++ R++LPYDID
Sbjct: 243 YAWGEMSEMPAPTQFEMVKWLHKAGFVVNPRMTLCRDVEALLTYYREIETERASLPYDID 302

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+VYKVD    Q +LG  +RSPRW I+HKFA +QA+T L  IDIQ+GRTG LTPVARL P
Sbjct: 303 GVVYKVDRLDWQNRLGFISRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLTP 362

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GG ++ NATLHNED I             +DIR GD V+++RAG+VIP+VV ++  +
Sbjct: 363 VTVGGVVVQNATLHNEDEIAR-----------KDIREGDTVVIQRAGDVIPQVVSVVTEK 411

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  +A+ +SFP  CPIC S  VR+ +       A  RCTG L C AQ +ERLKHFVSR A
Sbjct: 412 RRKNAKSYSFPHKCPICGSHAVREEDE------AVRRCTGALICPAQAVERLKHFVSRLA 465

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           F+IEGLG +Q+  F+        I  P DIFTLQ+R   +  K+++  G+GDVSV NL+ 
Sbjct: 466 FDIEGLGDKQIQEFYDD----GLIMHPVDIFTLQKRDARAVKKLKDREGYGDVSVNNLFA 521

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------HNNDD 594
           +I+ RR I L R IF+LGIRHVG   A+ LA++Y S +N    +    A      + ++ 
Sbjct: 522 AIDARRRIELNRLIFALGIRHVGEGNAKLLARHYGSIENLRAAMAEAAAAQTEEGNTSEA 581

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
           +  L  +  +GDI+A A+VEF+   RN+ A++ LL E+       +    S +  K +VF
Sbjct: 582 YADLNNIGGIGDIVADAVVEFFAEKRNVKALDELLAEIEVLPAE-QVRTDSAVAGKTVVF 640

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG+L K  R +A+    +LGA VS  +S+KTD ++ G+  GSKL KA++LGV ++ E+++
Sbjct: 641 TGSLTKFTRDEAKAQAERLGAKVSGSVSKKTDYVVAGEEAGSKLTKARELGVAVLTEDEW 700

Query: 715 LFLLQ 719
           L L++
Sbjct: 701 LKLIE 705


>gi|150397271|ref|YP_001327738.1| NAD-dependent DNA ligase LigA [Sinorhizobium medicae WSM419]
 gi|166216245|sp|A6UB73|DNLJ_SINMW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|150028786|gb|ABR60903.1| DNA ligase, NAD-dependent [Sinorhizobium medicae WSM419]
          Length = 717

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 343/712 (48%), Positives = 488/712 (68%), Gaps = 4/712 (0%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E ++  +A +EL+ L  E+S HD  Y+    P I D++YDALKRR D I   FP L R
Sbjct: 7   PVEQMTEAEAAEELAFLAAELSRHDMLYHGKDDPEISDADYDALKRRNDLIEERFPALIR 66

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
               + P  K+G   +L+   V H+ P LSL+  ++ ED R F+  IYRF  +  D SI 
Sbjct: 67  E---DSPSQKVGAAPSLTFAPVVHARPMLSLDNSFSDEDARAFVAGIYRFLGRLPDGSIA 123

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT+EPKIDG  +++RYE  + V AA RGDG +GE+V+A +R I  IP+ L    P+++E+
Sbjct: 124 FTVEPKIDGLSMSLRYENRRLVTAATRGDGTTGENVTANVRTIGMIPQRLPAEAPDVVEI 183

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE+Y++K+DF ALN EM A GR  Y NPRN ASG LR+L+     +R L FF +  G+ 
Sbjct: 184 RGEIYMAKSDFAALNAEMAAQGRPLYVNPRNTASGSLRQLDAKVTASRRLRFFAYAWGEM 243

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S + A  Q  M++  +  GFPVN  +++  +   ++ +Y+ ++  R  L YDIDG+VYKV
Sbjct: 244 SAMPADTQLGMVETFKAWGFPVNPLMQRFFSADELLEHYHHIERERPELDYDIDGVVYKV 303

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+  LQ +LG R+RSPRW  +HKF  ++A TRL  IDIQ+GRTG LTPVARLEP+ +GG 
Sbjct: 304 DQLDLQARLGFRSRSPRWATAHKFPAERAFTRLKGIDIQVGRTGALTPVARLEPITVGGV 363

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++TNATLHNEDYI+G+  +G+ +R GRDIR+GD V+V+RAG+VIP++VD++++ER    +
Sbjct: 364 VVTNATLHNEDYIRGIGNTGEPIREGRDIRIGDMVIVQRAGDVIPQIVDVVMDERPEGTE 423

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP+ CPIC S  VRD+N KTGK+ A  RCTGG  C AQ +E LKHFVSR+AF+IEGL
Sbjct: 424 PYRFPTSCPICGSHAVRDINEKTGKVDAVRRCTGGFVCRAQAVEHLKHFVSRNAFDIEGL 483

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++FFF+SED    IR   DIFTL+RRQ++S TK+ENI GFG VSV  LY++IN RR
Sbjct: 484 GSKQIEFFFESEDETLRIRTAPDIFTLERRQESSLTKLENIDGFGKVSVRKLYEAINARR 543

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +I L RFI++LGIRHVG   A+ LA+ Y +Y++F   +      + D W  L  +  +G+
Sbjct: 544 SIGLHRFIYALGIRHVGETTAKLLARSYGTYEHFGAAMTEAGGFSGDAWNELNSIDGIGE 603

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A+AIVEFY+ PRN+  +  LL+EV+P          S +  K +VFTG+L+K+ R +A
Sbjct: 604 VVARAIVEFYKEPRNLKVLSDLLEEVTPERAEMPVATDSPVAGKTVVFTGSLEKMTRDEA 663

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA V+  +S+KTDI++ G   GSKL+KA++LG++ M+E+++L L+
Sbjct: 664 KAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGLQTMDEDEWLALI 715


>gi|239832299|ref|ZP_04680628.1| DNA ligase, NAD-dependent [Ochrobactrum intermedium LMG 3301]
 gi|239824566|gb|EEQ96134.1| DNA ligase, NAD-dependent [Ochrobactrum intermedium LMG 3301]
          Length = 734

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 342/725 (47%), Positives = 474/725 (65%), Gaps = 19/725 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           IP+E L+  +A  EL  L +EI++HD+ Y+   +P I D+EYDALKRR DAI   FP L 
Sbjct: 19  IPVEKLTEPEAVSELGRLAREIAHHDELYHANDRPEISDAEYDALKRRNDAIEARFPHLV 78

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R+   + P  ++G         V H+ P LSL   ++ ED+R F+  +YRF  +  DNSI
Sbjct: 79  RT---DSPSLRVGTAPVSKFAPVVHARPMLSLGNAFSDEDVRDFVGSVYRFLGQLPDNSI 135

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++E
Sbjct: 136 AFTAEPKIDGLSMSIRYENGVLVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPSVVE 195

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY++K+DFLALN++M A G++ Y NPRN A+G LR+L+     +R L FF +  G+
Sbjct: 196 VRGEVYMAKSDFLALNEQMAAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGE 255

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S++ A  Q  M++  R  GFPVN   ++ +    ++++Y  +   R TL YDIDG+VYK
Sbjct: 256 MSDMPADTQMGMVEMFREWGFPVNPLTKRLHGADELLAHYRAIGLERPTLDYDIDGVVYK 315

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD   LQ +LG R+RSPRW I+HKF  +QA+T L  IDIQ+GRTG LTPVARLEP+ +GG
Sbjct: 316 VDRLDLQTRLGFRSRSPRWAIAHKFPAEQATTILRGIDIQVGRTGALTPVARLEPITVGG 375

Query: 366 ALITNATLHNEDYIKGLDASGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
            ++TNATLHNEDYIKG+   G+ +R    DIR+GD V+V+RAG+VIP++VD+I+ +R  D
Sbjct: 376 VVVTNATLHNEDYIKGIGLKGERIRADEHDIRLGDTVIVQRAGDVIPQIVDVILEKRPVD 435

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A PF FP  CP+C S  VR+         A +RCTGGL C+AQ +ER++HFVSR+AF+IE
Sbjct: 436 AVPFHFPHECPVCGSHAVREEGE------AVYRCTGGLTCAAQAVERIRHFVSRNAFDIE 489

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +ED +  I+ PADIFTLQ+RQ  S  K+ENI GFG  SV  LYD+IN 
Sbjct: 490 GLGEKQVEFFFHAEDDSLKIKSPADIFTLQKRQAGSLKKLENIEGFGATSVKKLYDAIND 549

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+  A+ YLSY  F +                 N+ W 
Sbjct: 550 RREIALNRFLFGLGIRHVGEVNAKRFARSYLSYAAFEKAALEAVPPKEGDRTDKGNEAWQ 609

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            LI V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 610 DLIAVEGIGSIVAEAVVDFYAEPHNREVLAALLAEVTPLDEAARVATGSPVEGKTVVFTG 669

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +SRKTD+++ G   GSKL KA +LG+++++E+ +  
Sbjct: 670 SLERMSRDEAKAMAERYGAKTAGSVSRKTDLVVAGPGAGSKLAKASELGIEVIDEDAWFK 729

Query: 717 LLQQY 721
           L+ + 
Sbjct: 730 LVGEE 734


>gi|92116846|ref|YP_576575.1| DNA ligase, NAD-dependent [Nitrobacter hamburgensis X14]
 gi|123083742|sp|Q1QNT2|DNLJ_NITHX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91799740|gb|ABE62115.1| DNA ligase, NAD-dependent [Nitrobacter hamburgensis X14]
          Length = 714

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 312/726 (42%), Positives = 457/726 (62%), Gaps = 24/726 (3%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K +   P+++L+  QA+ E   L  EI  H++ YYQ   P + D+ YDAL++R +AI   
Sbjct: 4   KPKTPPPVDSLTRAQAKIEHKRLALEIETHNERYYQKDAPTVSDAAYDALRQRLEAIEAR 63

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FPDL  +   N P   +G        KV H++P LSL   ++ E++ +F+ RI RF +  
Sbjct: 64  FPDLITA---NSPTQTVGAAPARGFAKVQHAVPMLSLGNAFSDEEVAEFVERIQRFLKLG 120

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
            D+      EPKIDG  +++RYE G+ V AA RGDG +GEDV+A +R I  +P  L    
Sbjct: 121 PDDIPAIVAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPHNLRGRN 180

Query: 182 PEI-IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
                E+RGEVY+ K DFLALN +    G   +ANPRN+A+G LR+ +     +R L FF
Sbjct: 181 IPTACELRGEVYMLKTDFLALNKKQEDAGDTVFANPRNSAAGSLRQKDVAITASRPLKFF 240

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ ++  A  Q++ML+ ++ +GF VN  +   N+   ++ +Y ++   R++L YDI
Sbjct: 241 AYAWGEMTDRPADTQHDMLEWLKDVGFKVNPLIELCNSVEKVLKFYRKIGEQRASLGYDI 300

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD    Q++LG  +RSPRW I+HKFA +QA+T L  IDIQ+GRTG +TPVARLE
Sbjct: 301 DGVVYKVDRLDWQERLGFVSRSPRWAIAHKFAAEQATTILKGIDIQVGRTGAMTPVARLE 360

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV IGG ++ NATLHNEDYIKG+   G+ +R G D+RVGD V+V+RAG+VIP+VV ++++
Sbjct: 361 PVTIGGVVVQNATLHNEDYIKGIGNDGQPIRDGVDLRVGDTVVVQRAGDVIPQVVSVVID 420

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R   AQP++FP  CPIC S  VR+         A  RCTG L C AQ +ERLKHFVSR 
Sbjct: 421 KRPNSAQPYAFPHTCPICGSHAVREEGE------AVRRCTGALICPAQAVERLKHFVSRL 474

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+I+GLG++Q+  F +       I+ PADIFTL+ R      K+E + GFG+VSV NL+
Sbjct: 475 AFDIDGLGEKQIQEFHER----GWIKEPADIFTLRER--NPKIKLEELEGFGEVSVRNLF 528

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----- 594
            +I+ RR I L R IF+LGIRHVG   A+ LA++Y     F   ++   A   DD     
Sbjct: 529 AAIDARRTIELNRLIFALGIRHVGEGNAKLLARHYGGIDAFRAAMSEAAAAQTDDGNASE 588

Query: 595 -WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653
            +  L  +  +GDI+A A+VEF+   RN+ A+  LL+E+        +N  S +  K +V
Sbjct: 589 AYADLNNISGIGDIVADAVVEFFAETRNVKALNDLLEEIEVLPVAQARN-DSAVAGKTVV 647

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           FTG+L+K  R +A+    ++GA VS  +S+KTD+++ G   GSKL+ A++ GV++++E++
Sbjct: 648 FTGSLEKFTRDEAKASAERMGAKVSGSVSKKTDLVVAGPGAGSKLKDAEKHGVQVISEDE 707

Query: 714 FLFLLQ 719
           +L L++
Sbjct: 708 WLKLIE 713


>gi|146342488|ref|YP_001207536.1| DNA ligase [Bradyrhizobium sp. ORS278]
 gi|166215400|sp|A4YZJ3|DNLJ_BRASO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146195294|emb|CAL79319.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+])
           [Bradyrhizobium sp. ORS278]
          Length = 716

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 294/721 (40%), Positives = 447/721 (61%), Gaps = 12/721 (1%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K +Q + +  L+  QA+ E   L  E+  HD  YYQ   P I D+ YD L+RR +AI   
Sbjct: 6   KSKQSVDVADLTKAQAKVEWKRLALELETHDRLYYQEDAPKISDAAYDELRRRFNAIEKR 65

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L      + P   +G   +    KV H++P LSL+  +  ED+R F+ RI RF +  
Sbjct: 66  FPELV---SRDSPSQTVGAAPSGRFKKVRHAVPMLSLDNAFAEEDVRDFVGRIARFLKLA 122

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
           +D+ I F+ EPKIDG  +++RYE G+ V AA RGDG  GEDV+A IR +  +P+ L    
Sbjct: 123 EDDRIAFSAEPKIDGLSMSLRYEGGQLVTAATRGDGAEGEDVTANIRTLKDVPQKLHGRN 182

Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P+I E+RGEVY++K  FLALN+     G   +ANPRN+A+G LR+ +PT   +R L FF
Sbjct: 183 LPDICEIRGEVYMTKQAFLALNERQKEAGDTIFANPRNSAAGSLRQKDPTITASRPLGFF 242

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G  S + A+ Q  M++     GF  N   +  ++   +++++  ++  R+ L YDI
Sbjct: 243 AYAWGDMSAMPAETQSGMIKWFEHCGFTTNPLTKLCHSVEELIAFHRAIEEQRAELDYDI 302

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD    Q++LG  +R+PRW I+HKF  ++A T L DI+IQ+GRTG  TPV +LE
Sbjct: 303 DGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAERAMTVLKDIEIQVGRTGSFTPVGKLE 362

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG ++ N TLHNEDYIKG+   G+V+R GRDIR+GD V+++RAG+VIP+VVD++++
Sbjct: 363 PVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVLID 422

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  DA+ F+FP  CP      V       G+  +  RCTG  AC  Q++E LK F SR 
Sbjct: 423 KRPADAEVFAFPRKCPCPLHTDVVREETAAGEEGSRARCTGEFACPYQKIEHLKLFASRR 482

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+I+GLG++Q+ FFF        ++ PADIFTLQ+R   +  K+E + G+G+ SV NL+
Sbjct: 483 AFDIDGLGEKQIQFFFDE----GWVKEPADIFTLQKR--NAKLKLEEVEGYGETSVRNLF 536

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           ++I  RR ++LERFI++LG+R+VG   A +LA+ Y S++ F      +   + +    + 
Sbjct: 537 NAIEARREMALERFIYALGMRYVGETTALALARGYGSWEAFHDACLKVANGDEEAIAEMD 596

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +  +G+ + +++  ++    N   VE L +EV        K  +S I  K +VFTGTL+
Sbjct: 597 ALDQIGETVIKSVAAYFGEDHNRGIVERLTREVKILDAEKPKR-NSPIATKTVVFTGTLE 655

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           K+ R +A+    +LGA VS  +S+KTD ++ G   GSKL+ A++ GVK++ E+++L L+ 
Sbjct: 656 KMTRDEAKATAERLGAKVSGSVSKKTDYVVAGPGAGSKLKDAEKHGVKVLTEDEWLQLIG 715

Query: 720 Q 720
           +
Sbjct: 716 E 716


>gi|222086432|ref|YP_002544966.1| DNA ligase, NAD-dependent [Agrobacterium radiobacter K84]
 gi|254781247|sp|B9JH39|DNLJ_AGRRK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221723880|gb|ACM27036.1| DNA ligase, NAD-dependent [Agrobacterium radiobacter K84]
          Length = 717

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 339/690 (49%), Positives = 471/690 (68%), Gaps = 4/690 (0%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
            +D  Y+    P I D+EYDALKRR DAI   FP L R+   + P  ++G   + +   V
Sbjct: 29  RNDALYHGNDAPEISDAEYDALKRRNDAIEARFPALVRA---DSPSRRVGAAPSETFMPV 85

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H+ P LSL+  ++ ED++ F+  +YRF  +  D SI FT EPKIDG  ++IRYE G+ V
Sbjct: 86  VHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAFTAEPKIDGLSMSIRYENGRMV 145

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
            AA RGDG +GE+V+A IR I  IP+ L    P ++E+RGEVY++K+DFLALN +M A G
Sbjct: 146 SAATRGDGTTGENVTANIRTIKEIPQTLPAGAPAVVEIRGEVYMAKSDFLALNAQMEAEG 205

Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268
           ++ Y NPRN A+G LR+L+     +R L FF +  G+ S++ A  Q+ M+Q     GFPV
Sbjct: 206 KQSYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMSDMPADTQFGMVQAFGEWGFPV 265

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
           N  +++ N+   I+++Y+E+   R  L YDIDG+VYKVD   LQ +LG R+RSPRW  +H
Sbjct: 266 NPLMKRLNSVADILAHYDEIGLQRPDLDYDIDGVVYKVDSLELQARLGFRSRSPRWATAH 325

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           KF  +QA TRLLDIDIQ+GRTG LTPVARLEP+ +GG ++TNATLHN DYIKG+   G+ 
Sbjct: 326 KFPAEQALTRLLDIDIQVGRTGALTPVARLEPITVGGVVVTNATLHNADYIKGIGNKGEP 385

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
           +R GRDIR+GD V+V+RAG+VIP++VD+++ +R   +  + FP  CP+C S  VRD+N K
Sbjct: 386 IRDGRDIRIGDMVIVQRAGDVIPQIVDVVLEKREASSVAYEFPKTCPVCGSHAVRDINEK 445

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508
           TGK+ A  RCTGG  C AQ  E LKHFVSR+A++IEGLG +Q+DFFF+S+DPA  +R   
Sbjct: 446 TGKVDAVTRCTGGFICRAQATEHLKHFVSRNAYDIEGLGSKQIDFFFESDDPALQVRTAP 505

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           DIFTL+RRQQ+S +K+ENI GFG VSV+ LY +IN+RR+I+L RFIF+LGIRHVG   A+
Sbjct: 506 DIFTLERRQQSSLSKLENIDGFGKVSVSKLYAAINERRDIALHRFIFALGIRHVGETTAK 565

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            LA+ Y +Y+ F   +        D W  L  +  VG+++A+A+VEFY+ PRN+  +  L
Sbjct: 566 LLARSYGTYEAFEAGMKEAAPLAGDAWNDLNNIEGVGEVVARAVVEFYKEPRNVEVISKL 625

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           L EV P          S +  K +VFTG+L+K  R +A+     LGA VS  +S+KTDI+
Sbjct: 626 LDEVRPQEAEQPTTSGSPVVGKTVVFTGSLEKFTRDEAKAKAESLGAKVSGSVSKKTDIV 685

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + G   GSKL+KA++  V++M E+++L L+
Sbjct: 686 VAGPGAGSKLDKAREFNVQVMTEDEWLELI 715


>gi|260892973|ref|YP_003239070.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4]
 gi|260865114|gb|ACX52220.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4]
          Length = 672

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 254/708 (35%), Positives = 380/708 (53%), Gaps = 45/708 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           LS E+A++ +  L +EI+YHD  YY    P+I D+EYD L     A+  AFP+      P
Sbjct: 5   LSKEEAKRRIEELRREIAYHDYRYYVLDSPVISDAEYDRLVLELMALEEAFPEFI---TP 61

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG        V H +P LSL   +  EDLR F  R+           + + +E
Sbjct: 62  NSPTQRVGGAPREGFPTVRHLVPMLSLANAFEPEDLRDFDRRVREAL---PGEKVEYVVE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++ Y  G+FV  A RGDG  GEDV+  +R I +IP     + P +IEVRGE 
Sbjct: 119 PKIDGLAVSLLYRDGEFVQGATRGDGEVGEDVTPNLRTIRSIPLRFLKDAPPLIEVRGEA 178

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ K  F+ LN+     G  P+ANPRNAA+G +R+L+P     R L+FF +G+G    I 
Sbjct: 179 FMPKEAFVKLNERREEAGEPPFANPRNAAAGSIRQLDPRVTAGRKLDFFAYGIGHYEGIS 238

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +E+L  +   GF VN   R  ++   ++ Y    +S R  LPY IDG+V KV+   
Sbjct: 239 FSTHWEVLDWLAEQGFRVNEHRRLFSSIDEVIDYVLSWQSKRFDLPYVIDGMVVKVNSLE 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG   +SPRW ++ KF  ++A T+L  I+I +GRTG+LTPVA  +PV I G  ++ 
Sbjct: 299 SQARLGATMKSPRWAVAFKFPPEEAVTKLRRIEISVGRTGVLTPVAVFDPVQIAGTTVSR 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED I+            +DIRVGD ++V +AG+VIP+VV  +   R  + Q F  
Sbjct: 359 ATLHNEDLIR-----------EKDIRVGDYIVVHKAGDVIPEVVRSLPERRTGNEQIFRM 407

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C ++ +R+      +          ++C A+  E + HF SR+A +I GLGK  
Sbjct: 408 PDHCPACGAKTIREEGEVAVR-------CPNISCPARLKESIFHFASRNAMDIRGLGKVL 460

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++           ++  ADI+ L+R           +   G  S  NL   I + ++  L
Sbjct: 461 VEQLVDR----GLVKNVADIYFLRREDL------LRLERMGPKSTANLLREIEESKSRGL 510

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R IF LGIRHVG   A+ LA+++ S    AQ               L  +P +G  IA 
Sbjct: 511 NRLIFGLGIRHVGERAAKLLAEHFGSIDRLAQATE----------EELTEIPEIGPKIAA 560

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++  F+  PRN+  +E L +         E      ++ K  VFTG L+   R +A+  +
Sbjct: 561 SVRAFFAEPRNLEVIERLREAGVRLETTKEVREEGPLKGKVFVFTGALKSFTREEAKALI 620

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +LG  V++ +SR+TD ++VG+NPGSK ++A++LG+K++NEE+F  LL
Sbjct: 621 ERLGGRVASSVSRRTDYVVVGENPGSKYDRARELGIKMLNEEEFKRLL 668


>gi|306843233|ref|ZP_07475843.1| DNA ligase, NAD-dependent [Brucella sp. BO2]
 gi|306286556|gb|EFM58135.1| DNA ligase, NAD-dependent [Brucella sp. BO2]
          Length = 719

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 334/724 (46%), Positives = 472/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+    P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLVLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDTVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LY++I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYEAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +                 ++ W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040849|gb|ACT57645.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 731

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 731/731 (100%), Positives = 731/731 (100%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH
Sbjct: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK
Sbjct: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN
Sbjct: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240
           IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV
Sbjct: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID
Sbjct: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP
Sbjct: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE
Sbjct: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA
Sbjct: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD
Sbjct: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR
Sbjct: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK
Sbjct: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ
Sbjct: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720

Query: 721 YNTTLRIHDDD 731
           YNTTLRIHDDD
Sbjct: 721 YNTTLRIHDDD 731


>gi|306844319|ref|ZP_07476911.1| DNA ligase, NAD-dependent [Brucella sp. BO1]
 gi|306275391|gb|EFM57132.1| DNA ligase, NAD-dependent [Brucella sp. BO1]
          Length = 719

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 337/724 (46%), Positives = 474/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+    P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEARFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLALNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L DIDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRDIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYEFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +                 ++ W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDVVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|254714455|ref|ZP_05176266.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1]
 gi|254717353|ref|ZP_05179164.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1]
 gi|261219183|ref|ZP_05933464.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1]
 gi|261322244|ref|ZP_05961441.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1]
 gi|260924272|gb|EEX90840.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1]
 gi|261294934|gb|EEX98430.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1]
          Length = 719

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 333/724 (45%), Positives = 473/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  S+  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSMKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596
           RR I+L RF+F LGIR+VG   A+ LA+ YLSY  F +                 ++ W 
Sbjct: 535 RREIALHRFLFGLGIRYVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|237815820|ref|ZP_04594817.1| DNA ligase, NAD-dependent [Brucella abortus str. 2308 A]
 gi|237789118|gb|EEP63329.1| DNA ligase, NAD-dependent [Brucella abortus str. 2308 A]
          Length = 725

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 335/724 (46%), Positives = 473/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 10  ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 69

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 70  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 126

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 127 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 186

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 187 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 246

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 247 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 306

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 307 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 366

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 367 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 426

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 427 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 480

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 481 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 540

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +                 ++ W 
Sbjct: 541 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 600

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 601 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 660

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 661 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 720

Query: 717 LLQQ 720
           L+ +
Sbjct: 721 LVGE 724


>gi|23502291|ref|NP_698418.1| NAD-dependent DNA ligase LigA [Brucella suis 1330]
 gi|62290313|ref|YP_222106.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 1 str. 9-941]
 gi|82700237|ref|YP_414811.1| NAD-dependent DNA ligase LigA [Brucella melitensis biovar Abortus
           2308]
 gi|161619368|ref|YP_001593255.1| NAD-dependent DNA ligase LigA [Brucella canis ATCC 23365]
 gi|163843675|ref|YP_001628079.1| NAD-dependent DNA ligase LigA [Brucella suis ATCC 23445]
 gi|189024547|ref|YP_001935315.1| NAD-dependent DNA ligase LigA [Brucella abortus S19]
 gi|225627871|ref|ZP_03785908.1| DNA ligase, NAD-dependent [Brucella ceti str. Cudo]
 gi|254689615|ref|ZP_05152869.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870]
 gi|254694105|ref|ZP_05155933.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya]
 gi|254697757|ref|ZP_05159585.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59]
 gi|254704678|ref|ZP_05166506.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686]
 gi|254708093|ref|ZP_05169921.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10]
 gi|254710462|ref|ZP_05172273.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94]
 gi|254730646|ref|ZP_05189224.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292]
 gi|256031956|ref|ZP_05445570.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1]
 gi|256113974|ref|ZP_05454757.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str.
           Ether]
 gi|256160155|ref|ZP_05457849.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1]
 gi|256257864|ref|ZP_05463400.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68]
 gi|256369836|ref|YP_003107347.1| DNA ligase [Brucella microti CCM 4915]
 gi|260169093|ref|ZP_05755904.1| NAD-dependent DNA ligase LigA [Brucella sp. F5/99]
 gi|260546856|ref|ZP_05822595.1| DNA ligase [Brucella abortus NCTC 8038]
 gi|260566074|ref|ZP_05836544.1| DNA ligase [Brucella suis bv. 4 str. 40]
 gi|260755142|ref|ZP_05867490.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870]
 gi|260758361|ref|ZP_05870709.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292]
 gi|260762187|ref|ZP_05874530.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884154|ref|ZP_05895768.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68]
 gi|261214403|ref|ZP_05928684.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya]
 gi|261315595|ref|ZP_05954792.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10]
 gi|261318033|ref|ZP_05957230.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94]
 gi|261755371|ref|ZP_05999080.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686]
 gi|261758598|ref|ZP_06002307.1| DNA ligase [Brucella sp. F5/99]
 gi|265989064|ref|ZP_06101621.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1]
 gi|265995315|ref|ZP_06107872.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str.
           Ether]
 gi|265998527|ref|ZP_06111084.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1]
 gi|297248700|ref|ZP_06932418.1| DNA ligase, NAD-dependent [Brucella abortus bv. 5 str. B3196]
 gi|75496544|sp|Q57C89|DNLJ_BRUAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81752355|sp|Q8FZQ3|DNLJ_BRUSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123768412|sp|Q2YLZ6|DNLJ_BRUA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359236|sp|A9M679|DNLJ_BRUC2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359237|sp|B0CHK8|DNLJ_BRUSI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781269|sp|B2S6P4|DNLJ_BRUA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|23348266|gb|AAN30333.1| DNA ligase, NAD-dependent [Brucella suis 1330]
 gi|62196445|gb|AAX74745.1| LigA, DNA ligase, NAD-dependent [Brucella abortus bv. 1 str. 9-941]
 gi|82616338|emb|CAJ11395.1| BRCT domain:NAD-dependent DNA ligase:ATP/GTP-binding site motif A
           (P-loop):Zn-finger in NAD-dependent DNA ligase, C4
           type:NAD [Brucella melitensis biovar Abortus 2308]
 gi|161336179|gb|ABX62484.1| DNA ligase, NAD-dependent [Brucella canis ATCC 23365]
 gi|163674398|gb|ABY38509.1| DNA ligase, NAD-dependent [Brucella suis ATCC 23445]
 gi|189020119|gb|ACD72841.1| DNA ligase [Brucella abortus S19]
 gi|225617876|gb|EEH14921.1| DNA ligase, NAD-dependent [Brucella ceti str. Cudo]
 gi|255999999|gb|ACU48398.1| DNA ligase [Brucella microti CCM 4915]
 gi|260095906|gb|EEW79783.1| DNA ligase [Brucella abortus NCTC 8038]
 gi|260155592|gb|EEW90672.1| DNA ligase [Brucella suis bv. 4 str. 40]
 gi|260668679|gb|EEX55619.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292]
 gi|260672619|gb|EEX59440.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675250|gb|EEX62071.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870]
 gi|260873682|gb|EEX80751.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68]
 gi|260916010|gb|EEX82871.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya]
 gi|261297256|gb|EEY00753.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94]
 gi|261304621|gb|EEY08118.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10]
 gi|261738582|gb|EEY26578.1| DNA ligase [Brucella sp. F5/99]
 gi|261745124|gb|EEY33050.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686]
 gi|262553151|gb|EEZ08985.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1]
 gi|262766428|gb|EEZ12217.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str.
           Ether]
 gi|264661261|gb|EEZ31522.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1]
 gi|297175869|gb|EFH35216.1| DNA ligase, NAD-dependent [Brucella abortus bv. 5 str. B3196]
          Length = 719

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 335/724 (46%), Positives = 473/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +                 ++ W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|83953544|ref|ZP_00962265.1| DNA ligase, NAD-dependent [Sulfitobacter sp. NAS-14.1]
 gi|83841489|gb|EAP80658.1| DNA ligase, NAD-dependent [Sulfitobacter sp. NAS-14.1]
          Length = 706

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 293/714 (41%), Positives = 430/714 (60%), Gaps = 15/714 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
             ++ LS E+A+ EL+ L   +   +  Y+    P + D+EYD LKRR  AI   FP L 
Sbjct: 5   TALQELSEEEAKAELARLADLLGRANAAYHTQDAPDLSDAEYDRLKRRNQAIEERFPRLK 64

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R+   + P +K+G        KV H +  LSL   +  ED+  F  RI ++        +
Sbjct: 65  RA---DSPSDKVGAAPAEGFGKVRHDVAMLSLGNAFEDEDVVDFDARIRKYLGLPSGTPL 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  +++RYE G+ V AA RGDG  GE+V+A  R I TIP  +    P ++E
Sbjct: 122 AFTAEPKIDGLSLSLRYENGELVQAATRGDGAVGENVTANARTIDTIPTRIQGA-PALLE 180

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+  +DF ALN    A G K +ANPRNAA+G LR+L+      R L FF +  G 
Sbjct: 181 VRGEVYMRHHDFDALNARQTANGGKTFANPRNAAAGSLRQLDAEITRARPLAFFAYAWGA 240

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A  Q+  ++++   GF  N      +    ++++Y +++  R+TL YDIDG+VYK
Sbjct: 241 LSAPLADTQFHAIERLSAFGFDTNPLTTLCDGPQEMIAHYRKIEEQRATLGYDIDGVVYK 300

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++ +LQ +LG R+ +PRW I+HKF  + A TRL DI IQ+GRTG L+PVARL+PV +GG
Sbjct: 301 VNDLALQDRLGFRSTTPRWAIAHKFPAELAWTRLEDITIQVGRTGALSPVARLKPVTVGG 360

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYIKGLD+ G  +R G+DIRVGD V V RAG+VIPK+ D+ + +R  D+
Sbjct: 361 VVVSNATLHNEDYIKGLDSKGASIRDGKDIRVGDWVQVYRAGDVIPKIADVDLGKRPEDS 420

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + + +P+ CP C S  +R+         A  RCTGGL C AQ +E+LKHFVSR AF+I+G
Sbjct: 421 EAYVYPTTCPECGSDAIREEG------DAVRRCTGGLICPAQAVEKLKHFVSRAAFDIDG 474

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F+        I  PADIFTL+ R  +   +++N  G+G+ S   L+ +I  +
Sbjct: 475 LGAKQVEQFYAD----GWIAEPADIFTLKARYGSGMQQLKNREGWGEKSADKLFQAIEDK 530

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R I L R IF+LGIRHVG   +  +A++Y S+  F   + +  + +   W  LI V  VG
Sbjct: 531 RKIPLSRLIFALGIRHVGEAASNLIAQHYGSWTAFEAAMGHAKSGDGPAWDDLIGVDGVG 590

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            ++AQ++V  +       +++ L+ E+S           S +  K +VFTGTL+K+ R +
Sbjct: 591 QVMAQSLVSTFAQEAERASIDRLVTELSVQDVARPDTEGSPVAGKTVVFTGTLEKMTRAE 650

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+    +LGA VS  +S KTDI++ G   GSK +KA  LG++ ++E+ +L L+ 
Sbjct: 651 AKARAERLGAKVSGSVSAKTDILVAGPGAGSKAKKAADLGIQTLDEDGWLALID 704


>gi|254702142|ref|ZP_05163970.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513]
 gi|261752711|ref|ZP_05996420.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513]
 gi|261742464|gb|EEY30390.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513]
          Length = 719

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 335/724 (46%), Positives = 472/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +                 ++ W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA     +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTVGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|225852902|ref|YP_002733135.1| NAD-dependent DNA ligase LigA [Brucella melitensis ATCC 23457]
 gi|256263616|ref|ZP_05466148.1| DNA ligase [Brucella melitensis bv. 2 str. 63/9]
 gi|254781270|sp|C0RE59|DNLJ_BRUMB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225641267|gb|ACO01181.1| DNA ligase, NAD-dependent [Brucella melitensis ATCC 23457]
 gi|263093668|gb|EEZ17673.1| DNA ligase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409444|gb|ADZ66509.1| NAD-dependent DNA ligase LigA [Brucella melitensis M28]
 gi|326539150|gb|ADZ87365.1| DNA ligase, NAD-dependent [Brucella melitensis M5-90]
          Length = 719

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 335/724 (46%), Positives = 473/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMAAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +                 ++ W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|148560656|ref|YP_001259312.1| NAD-dependent DNA ligase LigA [Brucella ovis ATCC 25840]
 gi|166215401|sp|A5VRG5|DNLJ_BRUO2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148371913|gb|ABQ61892.1| DNA ligase, NAD-dependent [Brucella ovis ATCC 25840]
          Length = 719

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 334/724 (46%), Positives = 472/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++    Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPVDTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +                 ++ W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|256255361|ref|ZP_05460897.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94]
 gi|261222562|ref|ZP_05936843.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94]
 gi|260921146|gb|EEX87799.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94]
          Length = 719

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 334/724 (46%), Positives = 472/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  + RF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVCRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +                 ++ W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|15965917|ref|NP_386270.1| NAD-dependent DNA ligase LigA [Sinorhizobium meliloti 1021]
 gi|307308227|ref|ZP_07587936.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti BL225C]
 gi|307319694|ref|ZP_07599119.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti AK83]
 gi|81634276|sp|Q92NM8|DNLJ_RHIME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|15075186|emb|CAC46743.1| Probable DNA ligase [Sinorhizobium meliloti 1021]
 gi|306894625|gb|EFN25386.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti AK83]
 gi|306901225|gb|EFN31831.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti BL225C]
          Length = 717

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 335/690 (48%), Positives = 469/690 (67%), Gaps = 4/690 (0%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
            HD  Y+    P I D++YDALKRR D I   FP L R    + P  K+G   +L+   V
Sbjct: 29  RHDMLYHGKDAPEISDADYDALKRRNDLIEERFPVLVRE---DSPSRKVGAAPSLTFAPV 85

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H+ P LSL+  ++ ED R F+  +YRF  K  D SI FT EPKIDG  +++RYE  + V
Sbjct: 86  VHARPMLSLDNTFSDEDARAFVAGVYRFLGKLPDGSIAFTAEPKIDGLSMSLRYENRRLV 145

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
            AA RGDG +GE+V+A +R I  IP+ L  + P+++E+RGE+Y++K+DF ALN EM A G
Sbjct: 146 TAATRGDGTTGENVTANVRTIGMIPQTLPADAPDVVEIRGEIYMAKSDFAALNAEMAAQG 205

Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268
           R  Y NPRN ASG LR+L+      R L FF +  G+ S + A  Q  M++  +  GFPV
Sbjct: 206 RPLYVNPRNTASGSLRQLDAKVTANRKLRFFAYAWGEMSAMPADTQLGMVETFKAWGFPV 265

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
           N  +++  +   ++ +Y+ ++  R  L YDIDG+VYKVD   LQ +LG R+RSPRW  +H
Sbjct: 266 NPLMQRFFSADELLEHYHHIERERPDLDYDIDGVVYKVDRLDLQARLGFRSRSPRWATAH 325

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           KF  +QA TRL  IDIQ+GRTG LTPVARLEP+ +GG ++TNATLHNEDYI+G+  +G+ 
Sbjct: 326 KFPAEQAFTRLKGIDIQVGRTGALTPVARLEPITVGGVVVTNATLHNEDYIRGVGNTGEP 385

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
           +R GRD+R+GD V+V+RAG+VIP++VD++++ER   A+P+ FP+ CPIC S  VRD+N K
Sbjct: 386 IRDGRDVRIGDMVIVQRAGDVIPQIVDVVMDERPEGAEPYRFPTTCPICGSHAVRDINEK 445

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508
           TGK+ A  RCTGG  C AQ +E LKHFVSR+AF+IEGLG +Q++FFF+SED    IR   
Sbjct: 446 TGKVDAVRRCTGGFVCRAQAVEHLKHFVSRNAFDIEGLGSKQIEFFFESEDENLRIRTAP 505

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           +IFTL+RRQ+ S  K+EN  GFG VSV  LY++IN RR+I+L R I++LGIRHVG   A+
Sbjct: 506 EIFTLERRQEASLNKLENTDGFGKVSVRKLYEAINARRSIALHRLIYALGIRHVGETTAK 565

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            LA+ Y SY++F   +      + D W  L  +  +G+++A+AIVEFY+ PRN+  V  L
Sbjct: 566 LLARSYGSYEHFGAAMTEAAGFSGDAWNELNSIDGIGEVVARAIVEFYKEPRNLKVVSEL 625

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           L+EV+P          S +  K +VFTG+L+K+ R +A+     LGA V+  +S+KTDI+
Sbjct: 626 LQEVTPESAELPVATDSPVAGKTVVFTGSLEKMTREEAKAKAESLGAKVAGSVSKKTDIV 685

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + G   GSKL+KA++LGV+ M+E+++L L+
Sbjct: 686 VAGPGAGSKLDKARELGVQTMDEDEWLALI 715


>gi|17986872|ref|NP_539506.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str. 16M]
 gi|256045051|ref|ZP_05447952.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260565350|ref|ZP_05835834.1| DNA ligase [Brucella melitensis bv. 1 str. 16M]
 gi|265991477|ref|ZP_06104034.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|81852173|sp|Q8YI56|DNLJ_BRUME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|17982511|gb|AAL51770.1| nad-dependent DNA ligase [Brucella melitensis bv. 1 str. 16M]
 gi|260151418|gb|EEW86512.1| DNA ligase [Brucella melitensis bv. 1 str. 16M]
 gi|263002261|gb|EEZ14836.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 719

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 335/724 (46%), Positives = 472/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G          V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALAIFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +                 ++ W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFKKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|256061478|ref|ZP_05451622.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33]
 gi|261325484|ref|ZP_05964681.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33]
 gi|261301464|gb|EEY04961.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33]
          Length = 719

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 334/724 (46%), Positives = 471/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY+ K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMVKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GFPVN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF  +QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +ED A  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDSALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +                 ++ W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|323136604|ref|ZP_08071685.1| DNA ligase, NAD-dependent [Methylocystis sp. ATCC 49242]
 gi|322397921|gb|EFY00442.1| DNA ligase, NAD-dependent [Methylocystis sp. ATCC 49242]
          Length = 705

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 299/718 (41%), Positives = 463/718 (64%), Gaps = 24/718 (3%)

Query: 1   MKKRQL---IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDA 57
           M K+     + ++ LS  +AR E + L ++I+ +D+ YY+   P++ D+EYDA +RR +A
Sbjct: 1   MTKKPASRPLSVDELSPAEARAEHARLGEDIARYDEAYYREDAPLVPDAEYDAARRRYEA 60

Query: 58  IAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF 117
           +  AFP+L     P     K+G + +    KV H++P LSL  +++ E++  F+ R+ RF
Sbjct: 61  LEKAFPELV---TPESLTRKVGAKPSEKFAKVKHAVPMLSLGNVFSDEEVFDFVARVRRF 117

Query: 118 WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177
               +   + FT EPKIDG   ++RYE G+   AA RGDG+ GEDV+A IR +  IP  L
Sbjct: 118 LGLGERARLAFTAEPKIDGLSCSLRYEGGRLAQAATRGDGYEGEDVTANIRTLREIPHKL 177

Query: 178 SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYL 236
             + P+++EVRGEVY++  DF ALN+   A G+ P+ANPRNAA+G LR+L+P     R L
Sbjct: 178 HGDAPDVLEVRGEVYMTHADFAALNERQTAAGKPPFANPRNAAAGSLRQLDPKITAGRPL 237

Query: 237 NFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
           +FF +G G+ SE+  + Q+ +L+    LG  VN   R  +    ++++Y  +++ R+TL 
Sbjct: 238 HFFAYGWGEASELPGETQWSVLEAFGRLGLKVNPLTRLCDGAEEMLAHYRAIEARRATLG 297

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           YDIDG+VYKVD+ SLQ++LG  +R+PRW  +HKF  ++A+T L DI+IQ+GRTG LTPVA
Sbjct: 298 YDIDGVVYKVDDISLQERLGFVSRAPRWAAAHKFPAERATTILRDIEIQVGRTGALTPVA 357

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
           RLEPV +GG +++NATLHNED I             +DIRVGD V+V+RAG+VIP++V++
Sbjct: 358 RLEPVTVGGVVVSNATLHNEDEIAR-----------KDIRVGDTVVVQRAGDVIPQIVEV 406

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           +  +R   A+P+ FP  CP C S  +R+++ KTG+     RCTG L C AQ +ERLKHF 
Sbjct: 407 VTEKRPHGAKPYHFPHVCPRCGSAALREIDEKTGEADVVRRCTGSLVCPAQAVERLKHFA 466

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR+AF+IEGLG +Q+++F+        I+  +DIFTL+ R + S TKI+N  GFG+ SV 
Sbjct: 467 SRNAFDIEGLGDRQIEYFYDE----GLIKTASDIFTLEERDRASLTKIKNREGFGETSVR 522

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL+ +I  RR I + RF+++LGIRHVG   AR LA+++  +++  +          +   
Sbjct: 523 NLFAAIEARRTIPINRFLYALGIRHVGETNARRLARHFGDFESLRETAREA-DPGTEARA 581

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            +  +  VG ++A+A+ +F+  P N   ++ALL +V+      E   SS +  K +VFTG
Sbjct: 582 RIDSIDGVGPVVAEALHDFFAEPHNEKELDALLSQVTLEP-MPEIASSSPVAGKTVVFTG 640

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            L+++ R +A+    + GA V+A +S+KTD+++ G   GSKL KAQ+LG+++++E+++
Sbjct: 641 ALERLTRDEAKAQAERFGAKVAASVSKKTDLVVAGPGAGSKLAKAQELGIEVISEDEW 698


>gi|209884394|ref|YP_002288251.1| DNA ligase, NAD-dependent [Oligotropha carboxidovorans OM5]
 gi|254781382|sp|B6JB45|DNLJ_OLICO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|209872590|gb|ACI92386.1| DNA ligase, NAD-dependent [Oligotropha carboxidovorans OM5]
          Length = 706

 Score =  615 bits (1585), Expect = e-174,   Method: Composition-based stats.
 Identities = 303/726 (41%), Positives = 442/726 (60%), Gaps = 33/726 (4%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
            K+ L  ++ L+  QA+ E   L  EI+ HD+ YYQ   P + D+ YD+L++R +A+   
Sbjct: 5   SKKPLPSVDQLTKAQAKVEHKRLALEIAMHDERYYQKDAPTVSDAAYDSLRQRLNAVEAR 64

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L  +   + P  K+G + + +  K+ H++P LSL   ++ E++ +F+ R+ RF    
Sbjct: 65  FPELVTT---DSPSQKVGAQPSRAFAKIRHAVPMLSLGNAFSDEEVAEFVARVRRFLNLG 121

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
            D  +    EPKIDG  +++RYE G+ V AA RGDG  GEDV+A +R I  +P  L    
Sbjct: 122 ADEPLAVVAEPKIDGLSLSLRYENGELVNAATRGDGFEGEDVTANVRTIKDVPHKLKGKN 181

Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P + EVRGEVY+ + DFL LN +    G   +ANPRN+A+G LR+ N     +R L FF
Sbjct: 182 IPAVCEVRGEVYMLREDFLTLNKKQADSGDTIFANPRNSAAGSLRQKNVAITASRPLKFF 241

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ S + A  Q+EM++     GF VN  +        ++ YY E+++ R+ L YDI
Sbjct: 242 AYAWGEMSAMPATTQFEMVKWFEKAGFAVNPRMILCRDVEALLRYYREIETERAQLSYDI 301

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD    Q +LG  +RSPRW I+HKFA +QA+T L  IDIQ+GRTG LTPVARL 
Sbjct: 302 DGVVYKVDRLDWQTRLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLA 361

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
            V +GG ++ NATLHNED I             +DIR GD V+++RAG+VIP+VV ++ +
Sbjct: 362 AVTVGGVVVQNATLHNEDEIAR-----------KDIREGDTVVIQRAGDVIPQVVSVVTD 410

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R   A+P+SFP  CP+C S  VR+         A  RCTG L C AQ +ERLKHFVSR 
Sbjct: 411 KRPKHAKPYSFPHVCPVCGSHAVREEGE------AVRRCTGALICPAQAVERLKHFVSRL 464

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+IEGLG +Q+  F+ ++     I  P DIFTL +R   +T K+++  G+GDVSV NL+
Sbjct: 465 AFDIEGLGDKQIHEFYDAK----LIMHPVDIFTLAKRDAHATDKLKDREGYGDVSVRNLF 520

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN------ND 593
            +I+ RR I L R IF+LGIRHVG   A+ LA++Y + +NF   +    A        ++
Sbjct: 521 AAIDARRRIELNRLIFALGIRHVGEGNAKLLARHYGTIENFRAAMAEAAAAQTEEGNPSE 580

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653
            +  L  +  VGDI+A A+VEF+   RN+ A+  LL E+       +    S +  K +V
Sbjct: 581 AYADLNAIGGVGDIVADAVVEFFAEERNVKALNELLHEIEVLPAE-QVRADSAVAGKTVV 639

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           FTG+L K  R +A+    +LGA VS  +S+KTD ++ G+  GSKL KA++LGV ++ E++
Sbjct: 640 FTGSLTKFTREEAKAQAERLGAKVSGSVSKKTDYVVAGEEAGSKLTKARELGVAVLTEDE 699

Query: 714 FLFLLQ 719
           +L L++
Sbjct: 700 WLKLIE 705


>gi|91977847|ref|YP_570506.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB5]
 gi|123735250|sp|Q133Y4|DNLJ_RHOPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91684303|gb|ABE40605.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB5]
          Length = 714

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 305/727 (41%), Positives = 445/727 (61%), Gaps = 28/727 (3%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
            K     I+ L+  +A+ EL  L   I  HD  YYQ   P I D++YDAL+RR +AI   
Sbjct: 5   SKTAAPDIDKLTKPKAKVELMRLRLAIEGHDKAYYQDDAPKIPDADYDALRRRLEAIEAK 64

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L      + P   +G        KV H++P LSL   ++ +++ +F+ R+ RF + +
Sbjct: 65  FPELL---SASSPSQTVGAAPARGFSKVQHAVPMLSLGNAFSDDEVGEFVERVQRFLKLE 121

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LN 180
           D  +I    EPKIDG  +++RYE G  V AA RGDG +GEDV+A +R I  IP  L    
Sbjct: 122 DIPAI--VAEPKIDGLSLSLRYENGTLVRAATRGDGFTGEDVTANVRTIADIPTTLKAKT 179

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           IP   E+RGEVY+ K+DFLALN      G   +ANPRN+A+G LR+ +     +R L FF
Sbjct: 180 IPAACELRGEVYMLKHDFLALNKRQEEAGDTVFANPRNSAAGSLRQKDVAITASRPLKFF 239

Query: 240 VHGLGKT--SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            +  G+     + +  Q+ ML  +   GF VN  +   ++    +++Y  +   R+ LPY
Sbjct: 240 AYAWGEMSDYPMESPTQHAMLAWLGDAGFTVNPEITLCHSVDDALAFYRRIGEQRAALPY 299

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+VYKVD    Q +LG  +RSPRW I+HKFA +QA T L  IDIQ+GRTG LTPVAR
Sbjct: 300 DIDGVVYKVDRLDYQARLGFVSRSPRWAIAHKFAAEQAVTVLEKIDIQVGRTGALTPVAR 359

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           L+PV +GG ++ NATLHNEDYIKG+ + G  +R G DIR GD V+V+RAG+VIP++V ++
Sbjct: 360 LQPVTVGGVVVQNATLHNEDYIKGVGSDGSPLRDGVDIREGDTVVVQRAGDVIPQIVTVV 419

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           +++R  D   + FP  CP+C S   R+         A  RCTG L C AQ +ERLKHFVS
Sbjct: 420 LDKRPADLPAYKFPHKCPVCGSHAAREEGE------AVWRCTGALICPAQAVERLKHFVS 473

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R AF+I+GLG++Q+  F +       +R PADIFTL+ R   +  K+E++ G+G+ SV N
Sbjct: 474 RLAFDIDGLGEKQIVLFHER----GWVREPADIFTLKAR--NAELKLEDLEGYGETSVRN 527

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------HN 591
           L+ +I+ RRNI L R IF+LGIRHVG   A+ LA++Y S   F   +           + 
Sbjct: 528 LFAAIDARRNIELNRLIFALGIRHVGEGNAKLLARHYGSIDVFLAAMRAAAEGQTPEGNT 587

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651
           ++ +  L  +  +GD++A+A+VEF+  PRN+ A++ALL+E+   +   +    + +  K 
Sbjct: 588 SEAYQDLDNIAGIGDVVAEAVVEFFAEPRNVGALDALLREIEV-LPVEQAKQDTAVAGKT 646

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +VFTG L K  R +A+    +LGA V+  +S+KTD ++ G++ GSKL KA+ LGV ++ E
Sbjct: 647 VVFTGALTKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKARDLGVAVLTE 706

Query: 712 EQFLFLL 718
           +++L L+
Sbjct: 707 DEWLALI 713


>gi|39936579|ref|NP_948855.1| DNA ligase [Rhodopseudomonas palustris CGA009]
 gi|39650435|emb|CAE28958.1| DNA ligase [Rhodopseudomonas palustris CGA009]
          Length = 692

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 296/706 (41%), Positives = 438/706 (62%), Gaps = 27/706 (3%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
            L  EI  HD  YYQ   P I D++YDAL+RR +AI   FP+L  +   + P   +G   
Sbjct: 2   RLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQKFPELVNA---SSPTQTVGAAP 58

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
                KV H++P LSL   +  +++ +F  R+ RF +  D  +I    EPKIDG  +++R
Sbjct: 59  ARGFAKVQHAVPMLSLGNAFADDEVAEFALRVQRFLKLDDVPAI--VAEPKIDGLSLSLR 116

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLAL 201
           YE G+ V AA RGDG +GEDV+A +R I  +P  L     P   E+RGEVY+ K DFLAL
Sbjct: 117 YENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGKHIPATCELRGEVYMLKQDFLAL 176

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT--SEIFAKGQYEML 258
           N          +ANPRN+A+G LR+ + T   +R L FF +  G+     +    Q++ML
Sbjct: 177 NKRQEEANETVFANPRNSAAGSLRQKDVTVTASRPLKFFAYAWGEMSDYPMEEPTQHKML 236

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           Q +   GF VN  +   ++    +++Y  +   R++LPYDIDG+VYKVD    Q++LG  
Sbjct: 237 QWLDHAGFVVNPEITLCHSVEDALAFYRRIGEKRASLPYDIDGVVYKVDRLDYQERLGFV 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           +RSPRW I+HKFA +QA+T L  IDIQ+GRTG +TPVARL+PV +GG ++ NATLHNEDY
Sbjct: 297 SRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGAMTPVARLQPVTVGGVVVQNATLHNEDY 356

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           IKG+   G+ +R G DIR GD V+V+RAG+VIP++V +++ +R   A+P+ FP  CP+C 
Sbjct: 357 IKGIGNDGEPIRDGVDIREGDTVVVQRAGDVIPQIVSVVMEKRPAGAEPYHFPHKCPVCG 416

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S  VR+         A  RCTG L C AQ +ERLKHFVSR AF+I+GLG++Q++ F +  
Sbjct: 417 SHAVREEGE------AVWRCTGALICPAQAVERLKHFVSRLAFDIDGLGEKQIELFHER- 469

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                ++ PADIFTL+ R   +  K+E + G+G+ SV NL+ +I+ RR+I L R +F+LG
Sbjct: 470 ---GWVQEPADIFTLKAR--NAELKLEQLEGYGETSVRNLFAAIDARRSIELHRLVFALG 524

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAH------NNDDWLSLIRVPLVGDIIAQAI 612
           IRHVG   A+ LA++Y +   F   +             ++ +  L  +  +GD++A+A+
Sbjct: 525 IRHVGEGNAKLLARHYGTLDAFLSAMRAAADAQTEEGNTSEAYQDLDNIAGIGDVVAEAV 584

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           VEF+   RNI A++ALL E++  +   +    + +  K +VFTG+L K  R +A+    +
Sbjct: 585 VEFFAEERNIKALDALLAELTEVLPAEQARRDTAVAGKTVVFTGSLSKFTRDEAKAAAER 644

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           LGA V+  +S+KTD ++ G++ GSKL KA+ LGV ++ E+++L L+
Sbjct: 645 LGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLTEDEWLALI 690


>gi|83942325|ref|ZP_00954786.1| DNA ligase, NAD-dependent [Sulfitobacter sp. EE-36]
 gi|83846418|gb|EAP84294.1| DNA ligase, NAD-dependent [Sulfitobacter sp. EE-36]
          Length = 706

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 296/714 (41%), Positives = 433/714 (60%), Gaps = 15/714 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
             ++ LS E+A+ EL+ L   +   +  Y+    P + D+EYD LKRR  AI   FP L 
Sbjct: 5   TALQELSEEEAKAELARLADLLGRANTAYHTQDAPDLSDAEYDRLKRRNQAIEERFPGLK 64

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R+   + P +K+G        KV H +  LSL   +  ED+  F  RI ++        +
Sbjct: 65  RA---DSPSDKVGATPAEGFGKVRHDVAMLSLGNAFEDEDVVDFDARIRKYLGLPSGTPL 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  +++RYE G+ V AA RGDG  GE+V+A  R I TIP  +    P ++E
Sbjct: 122 AFTAEPKIDGLSLSLRYENGELVQAATRGDGAVGENVTANARTIDTIPTRIKGA-PALLE 180

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+  +DF ALN    A G K +ANPRNAA+G LR+L+P     R L FF +  G 
Sbjct: 181 VRGEVYMRHDDFDALNARQTANGGKTFANPRNAAAGSLRQLDPEITRARPLAFFAYAWGA 240

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A+ Q++ +++++  GF  N      +    ++++Y +++  R+TL YDIDG+VYK
Sbjct: 241 LSAPLAESQFQAIERLKAFGFDTNPLTTLCDGPQEMIAHYRKIEEQRATLGYDIDGVVYK 300

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++  LQ +LG R+ +PRW I+HKF  + A TRL DI IQ+GRTG L+PVARL PV +GG
Sbjct: 301 VNDLGLQDRLGFRSTTPRWAIAHKFPAELAWTRLEDITIQVGRTGALSPVARLHPVTVGG 360

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYIKGLD+ G  +R G+DIRVGD V V RAG+VIPK+ D+ + +R  DA
Sbjct: 361 VVVSNATLHNEDYIKGLDSKGARIREGKDIRVGDWVQVYRAGDVIPKIADVDLGKRPEDA 420

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + + +P+ CP C S  +R+         A  RCTGGL C AQ +E+LKHFVSR AF+I+G
Sbjct: 421 RAYVYPTTCPECGSDAIREEG------DAVRRCTGGLICPAQAVEKLKHFVSRAAFDIDG 474

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F+        I  PADIFTL+ R  +   +++N  G+G+ S   L+ +I  +
Sbjct: 475 LGAKQVEQFYGD----GWIAEPADIFTLKTRYGSGMQQLKNREGWGEKSADKLFQAIEDK 530

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R ISL R IF+LGIRHVG   +  +A++Y S+  F   + +  + +   W  LI V  VG
Sbjct: 531 RKISLSRLIFALGIRHVGEAASNLIAQHYGSWTAFEAAMGHAKSGDGPAWDDLIGVDGVG 590

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            ++AQ++V  +       +++ L+ E+S           S +  K +VFTGTL+K+ R +
Sbjct: 591 QVMAQSLVSTFAQEAERASIDRLVTELSVQDVALPDTEGSPVAGKTVVFTGTLEKMTRAE 650

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+    +LGA VS  +S KTDI++ G   GSK +KA  LG++ ++E+ +L L+ 
Sbjct: 651 AKARAERLGAKVSGSVSAKTDILVAGPGAGSKAKKAADLGIQTLDEDGWLALID 704


>gi|148257407|ref|YP_001241992.1| DNA ligase (polydeoxyribonucleotide synthase (NAD+))
           [Bradyrhizobium sp. BTAi1]
 gi|166215399|sp|A5EPJ2|DNLJ_BRASB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146409580|gb|ABQ38086.1| DNA ligase (Polydeoxyribonucleotide synthase (NAD+))
           [Bradyrhizobium sp. BTAi1]
          Length = 716

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 305/722 (42%), Positives = 452/722 (62%), Gaps = 14/722 (1%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K ++ + +  L+  QA+ E   L  E+  HD  YYQ   P I D+EYD L+RR +AI   
Sbjct: 6   KPKKPVDVAELTKAQAKVEWKRLALELEVHDRLYYQDDAPKISDAEYDELRRRFNAIETR 65

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+L  SE    P  K+G   +    KV H++P LSL+  +  ED+R F+ RI RF +  
Sbjct: 66  FPELVSSE---SPSQKVGASPSGRFKKVRHAVPMLSLDNAFAEEDVRDFVGRIARFLKLA 122

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-N 180
           DD  I F+ EPKIDG  +++RYE G+ V AA RGDG  GEDV+A IR +  +P+ L   N
Sbjct: 123 DDR-IDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAEGEDVTANIRTLKDVPQKLHGRN 181

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P++ EVRGEVY++K  FLALN+     G   +ANPRN+A+G LR+ +P    +R L FF
Sbjct: 182 WPDVCEVRGEVYMTKQAFLALNERQKEAGDTIFANPRNSAAGSLRQKDPAITASRPLGFF 241

Query: 240 VHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +  G+ S    A+ Q  M++     GF  N   R  ++   +++++  ++  R+ L YD
Sbjct: 242 AYAWGEISGTPPAETQTGMIKWFEQCGFTTNPLTRLCHSVEELIAFHRSIEEQRAELDYD 301

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD    Q++LG  +R+PRW I+HKF  ++A T L DI+IQ+GRTG LTPV +L
Sbjct: 302 IDGVVYKVDRIDWQERLGFVSRTPRWAIAHKFPAERAMTVLKDIEIQVGRTGSLTPVGKL 361

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GG ++ N TLHNEDYIKG+   G+V+R GRDIR+GD V+++RAG+VIP+VVD+++
Sbjct: 362 EPVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVVI 421

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ++R   A+PF  P  CP      V      TG+  +  RCTG  AC  Q++E LK F SR
Sbjct: 422 DKRPAQARPFHLPKTCPCPLHTDVVREETATGEEGSRARCTGEFACPYQKIEHLKLFASR 481

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            AF+I+GLG++Q+ FFF+       ++ PADIFTLQ+R   +  K+E I G+G+ SV NL
Sbjct: 482 RAFDIDGLGEKQIAFFFEQ----GWVKEPADIFTLQKR--NAGLKLEEIEGYGETSVRNL 535

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           +++I+ RR I+LERFI++LG+RHVG   A +LA+ Y S+  F +    + A + +    +
Sbjct: 536 FNAIDARREIALERFIYALGMRHVGETTALALARGYGSWDAFHEACLKVAAGDEEAIAEM 595

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
             +  +GD + +++  ++    N   VE L +EV        K   S I  K +VFTGTL
Sbjct: 596 DALDQIGDTVIKSVAAYFAEDHNRGIVERLTQEVKILDAEKPKR-HSPIATKTVVFTGTL 654

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +K+ R +A+    +LGA VS  +S+KTD ++ G   GSKL++AQ+ GV+++ E+++L L+
Sbjct: 655 EKMTRDEAKATAERLGAKVSGSVSKKTDYVVAGPGAGSKLKEAQKHGVQVLTEDEWLQLI 714

Query: 719 QQ 720
            +
Sbjct: 715 AE 716


>gi|294852747|ref|ZP_06793420.1| DNA ligase [Brucella sp. NVSL 07-0026]
 gi|294821336|gb|EFG38335.1| DNA ligase [Brucella sp. NVSL 07-0026]
          Length = 719

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 334/724 (46%), Positives = 471/724 (65%), Gaps = 19/724 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+     +R L FF +  G
Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + S++ A  Q  M++  R  GF VN  +++ N+  G++++Y  +   R TL YDIDG+VY
Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFLVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD   LQ +LG R+RSPRW I+HKF   QA T L  IDIQ+GRTG LTPVARLEP+ +G
Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAGQALTILRGIDIQVGRTGALTPVARLEPITVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E    
Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +P+ FP  CP C S  VR+         A  RCTGGL C AQ +ER++HFVSR+AF+IE
Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q++FFF +EDPA  IR PADIFTL++RQ+ S TK++NI GFG  SV  LYD+I+ 
Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--------IAHNNDDWL 596
           RR I+L RF+F LGIRHVG   A+ LA+ YLSY  F +                 ++ W 
Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            ++ V  +G I+A+A+V+FY  P N   + ALL EV+P          S +E K +VFTG
Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG++++NE+ +  
Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714

Query: 717 LLQQ 720
           L+ +
Sbjct: 715 LVGE 718


>gi|27381702|ref|NP_773231.1| DNA ligase [Bradyrhizobium japonicum USDA 110]
 gi|81735382|sp|Q89FV8|DNLJ_BRAJA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|27354871|dbj|BAC51856.1| DNA ligase [Bradyrhizobium japonicum USDA 110]
          Length = 716

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 302/721 (41%), Positives = 449/721 (62%), Gaps = 13/721 (1%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K + L  +  L+  QA+ EL  L  E+  HD  YYQ   P + D+EYDAL++R +AI   
Sbjct: 7   KSKPLRDVAELTKAQAKVELMRLALELEGHDKRYYQDDAPTVTDAEYDALRQRFNAIEKR 66

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP+   +E    P  K+G   +    KV H++P LSL+  +  ED+R F+ RI RF +  
Sbjct: 67  FPEFVSAE---SPSQKVGAAPSGRFRKVRHAVPMLSLDNAFAEEDVRDFVGRIVRFLKL- 122

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
           DD+ I F+ EPKIDG  +++RYE G+ V AA RGDG  GEDV+A IR +  +P+ L    
Sbjct: 123 DDDKIDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAEGEDVTANIRTLEDVPQKLKGRN 182

Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P+I EVRGEVY++K  FLALN+   A G   +ANPRN+A+G LR+ +PT   +R L FF
Sbjct: 183 VPDICEVRGEVYMTKKAFLALNERQKAAGDTIFANPRNSAAGSLRQKDPTITASRPLGFF 242

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ S +  + Q  M+      GF  N   R  ++   +++++  ++  R+ L YDI
Sbjct: 243 AYAWGEMSAMPEETQTGMIHWFERCGFKTNPLTRLCHSVEELIAFHQRIEEERAELDYDI 302

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD    Q++LG  +R+PRW I+HKF  +QA T L DI+IQ+GRTG  TPV +LE
Sbjct: 303 DGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAEQAMTVLRDIEIQVGRTGSFTPVGKLE 362

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG ++ N TLHNEDYIKG+   G+V+R GRDIR+GD V+++RAG+VIP+VVD++++
Sbjct: 363 PVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVVLD 422

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R   A+ F FP  CP      V       G+  +  RCTG  AC  Q++E LK FVSR 
Sbjct: 423 KRPKTAKEFHFPKTCPCPLHTDVTREETAAGEEGSRARCTGEFACPYQKIEHLKLFVSRR 482

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+I+GLG++QL +FF        ++ PADIFTL++R   +  K+E I G+G  SV NL+
Sbjct: 483 AFDIDGLGEKQLQYFFDE----GFVKEPADIFTLEKR--NAKLKLEEIEGYGATSVRNLF 536

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I  RR I+LERF+++LG+RHVG   A +LA+ Y S++ F      +   + +    + 
Sbjct: 537 AAIESRRRIALERFVYALGMRHVGETTALALARGYGSWEAFHDACLKVAKGDEEAMADMD 596

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +  +GD + ++I +++    N   VE L KEV        K+ +S +  K +VFTG+L+
Sbjct: 597 ALDQIGDTVIKSIADYFGESHNRGIVERLTKEVEIVDAEKPKS-NSAVAGKTVVFTGSLE 655

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           K+ R +A+    +LGA VS  +S+KTD+++ G   GSKL +A + GVK++ E+++L L+ 
Sbjct: 656 KMTRDEAKATAERLGAKVSGSVSKKTDLVVAGPGAGSKLAEANKHGVKVLTEDEWLKLIG 715

Query: 720 Q 720
           +
Sbjct: 716 E 716


>gi|85714986|ref|ZP_01045971.1| NAD-dependent DNA ligase [Nitrobacter sp. Nb-311A]
 gi|85698183|gb|EAQ36055.1| NAD-dependent DNA ligase [Nitrobacter sp. Nb-311A]
          Length = 705

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 304/726 (41%), Positives = 448/726 (61%), Gaps = 33/726 (4%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K +   P+++L+  QAR E   L  EI  H++ YYQ   P + D+ YDA++RR +AI   
Sbjct: 4   KSKVPPPVDSLTRSQARVEHKRLVLEIEAHNERYYQQDAPTVSDAAYDAMQRRLEAIEAR 63

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FPDL  +   + P   +G        KV H++P LSL   ++  ++ +F+ RI RF +  
Sbjct: 64  FPDLVTA---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFSDAEVAEFVERIRRFLKLG 120

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
            D+      EPKIDG  +++RYE G+ V AA RGDG +GEDV+A +R I  +P  L    
Sbjct: 121 ADDIPAIVAEPKIDGLSLSLRYEHGELVRAATRGDGFTGEDVTANVRTIRDVPHTLRGRD 180

Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P   E+RGEVY+ K DFLALN +  A G   +ANPRN+A+G LR+ +     +R L FF
Sbjct: 181 IPAACELRGEVYMLKEDFLALNKKQEAAGDTVFANPRNSAAGSLRQKDVAITASRPLKFF 240

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ ++  A+ Q++ML+ +R +GF VN  +   ++   ++ +Y  +   R+TL YDI
Sbjct: 241 AYAWGEMTDRPAETQHDMLKWLRDVGFMVNPLIELCSSVEQVLQFYRRIGEQRATLGYDI 300

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD    Q++LG  +RSPRW I+HKFA +QA T L  IDIQ+GRTG +TPVARLE
Sbjct: 301 DGVVYKVDRLDWQERLGFVSRSPRWAIAHKFAAEQAMTILRGIDIQVGRTGAMTPVARLE 360

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG ++ NATLHNED I             +DI VGD V+V+RAG+VIP+VV +I+ 
Sbjct: 361 PVTVGGVVVQNATLHNEDEITR-----------KDIHVGDTVVVQRAGDVIPQVVSVIIG 409

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  +AQP+ FP  CP+C S  VR+         A  RCTG L C AQ +ERLKHFVSR 
Sbjct: 410 KRPRNAQPYVFPHKCPVCGSHAVREEGE------AVRRCTGTLICPAQAVERLKHFVSRL 463

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+I+GLG++Q+  F+        I  P DIFTLQ+R   +T K+ +  G+GDVSV NL+
Sbjct: 464 AFDIDGLGEKQIQEFYDD----GLIMHPVDIFTLQKRDARATKKLRDREGYGDVSVRNLF 519

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH------NND 593
            +I+ RR I L R IF+LGIRHVG   A+ LA++Y   +NF   +             ++
Sbjct: 520 AAIDARRKIELNRLIFALGIRHVGEGNAKLLARHYGGIENFRSAMAEAAGAQTDEGNASE 579

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653
            +  L  +  +G+I+A A+VEF+  PRN+ A+  LL+E+   +   +    S +  K +V
Sbjct: 580 AYADLNNIGGIGEIVANAVVEFFAEPRNVKALNDLLEEIEV-LPVAQTRSDSAVAGKTVV 638

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           FTG+L+K  R +A+    ++GA VS  +S+KTD+++ G   GSKL+ A++ GV++++E++
Sbjct: 639 FTGSLEKFTRDEAKASAERMGARVSGSVSKKTDLVVAGPGAGSKLKDAEKFGVRVISEDE 698

Query: 714 FLFLLQ 719
           +L L++
Sbjct: 699 WLKLIE 704


>gi|240850882|ref|YP_002972282.1| DNA ligase [Bartonella grahamii as4aup]
 gi|240268005|gb|ACS51593.1| DNA ligase [Bartonella grahamii as4aup]
          Length = 719

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 338/721 (46%), Positives = 472/721 (65%), Gaps = 17/721 (2%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L+  +A  EL  L +EI+ HD  Y +  +P I D+EYDAL+RR   I   FP+L R  
Sbjct: 7   KNLTAVEAESELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFPELIRV- 65

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P +KIG  ++    K  H+ P LSL+  ++ ED+ +F+ RI RF +  +   +  T
Sbjct: 66  --DSPSHKIGAPISEKFEKSVHAQPMLSLDNAFSSEDVTEFVERIRRFLRLPETQVLEIT 123

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            EPKIDG  +++RYEKG+ V AA RGDG  GE+V+A  R I  IP+VL  + P+IIEVRG
Sbjct: 124 AEPKIDGLSLSLRYEKGRLVGAATRGDGTVGENVTANARTIADIPQVLQGDFPDIIEVRG 183

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248
           EVY+ + DF ALN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ SE
Sbjct: 184 EVYMGREDFQALNISQQEKGKLTFANPRNAAAGSLRQLDSRITASRKLQFFAYACGEVSE 243

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           I A+ Q EM++K++  GF +N   +   T   I+SYY++++  R +L YDIDG+VYKV++
Sbjct: 244 ILAESQMEMMKKLKEYGFVINPLTKAFKTLEEIISYYHDIEECRHSLSYDIDGIVYKVND 303

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQK+LG  +RSPRW I+HKF  ++A   L DIDIQ+GRTG LTPVARL P+ +GG ++
Sbjct: 304 LMLQKRLGFVSRSPRWAIAHKFPAEKAIALLKDIDIQVGRTGALTPVARLTPITVGGVVV 363

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNA+LHNEDYIKG+   G+ +R GRDIRVGD V+V+RAG+VIP+V+D+I+ +R  DA  F
Sbjct: 364 TNASLHNEDYIKGIGHKGEPIREGRDIRVGDSVIVQRAGDVIPQVIDVIIEKRPKDAAVF 423

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP C S  VR++        A  RCTGGL C AQ +ER++HFV+R+AF+IEGLGK
Sbjct: 424 IFPHLCPACGSHAVREVGE------AVRRCTGGLICPAQAIERIRHFVARNAFDIEGLGK 477

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +Q++FFF ++D A  I  PADIFTL+RRQ+ S  ++ENI GFG VSV  LYD+IN RR I
Sbjct: 478 KQVEFFFYAQDEALCIHTPADIFTLERRQEKSLIRLENIEGFGTVSVRKLYDAINARREI 537

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI-------NNIIAHNNDDWLSLIRV 601
            L RF+F+LGIRHVG   AR LA+ Y +Y  F           +      N+ W+ L  +
Sbjct: 538 PLSRFLFALGIRHVGEVNARRLARTYKNYTAFETTAMGALMPCDKANEKGNEAWMELTNI 597

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G  +  AIV+FYQ   N   +  LL+EV+P         SS I  K +VFTGTL  +
Sbjct: 598 EGIGPQVGSAIVDFYQEAHNREVLSVLLEEVTPLDEEPITTASSPIAEKTIVFTGTLAHM 657

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R +A+    +LGA  S  LS+KTD+++ G   GSKL KA++LGV++++EE +L L++++
Sbjct: 658 SRDEAKALAERLGAKTSGSLSKKTDLLVAGPGAGSKLAKAEELGVEVIDEETWLQLIEEH 717

Query: 722 N 722
           +
Sbjct: 718 D 718


>gi|163868703|ref|YP_001609915.1| NAD-dependent DNA ligase LigA [Bartonella tribocorum CIP 105476]
 gi|190359235|sp|A9IW95|DNLJ_BART1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|161018362|emb|CAK01920.1| DNA ligase [Bartonella tribocorum CIP 105476]
          Length = 719

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 337/723 (46%), Positives = 472/723 (65%), Gaps = 17/723 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ L++ +A +EL  L +EI+ HD  Y +  +P I D+EYDAL+RR   I   FP+L R 
Sbjct: 6   IKNLTVVEAERELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFPELIRV 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P +KIG  ++    K  H+ P LSL+  ++ ED+ +F+ RI RF +  +   +  
Sbjct: 66  ---DSPSHKIGAAISEKFEKSVHAQPMLSLDNAFSAEDVYEFVERIRRFLRLPETQVLEI 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYEKG+ V AA RGDG  GE+V+A  R I  IP+VL  + P++IEVR
Sbjct: 123 TAEPKIDGLSLSLRYEKGRLVRAATRGDGTVGENVTANARTIADIPQVLQGDFPDVIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247
           GEVY+ + DF ALN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ S
Sbjct: 183 GEVYMGREDFQALNISQQEKGKLTFANPRNAAAGSLRQLDSRITASRKLQFFAYACGEVS 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           EIFA+ Q EM+ K++  GF +N   +   T   I+SYY +++  R +L YDIDG+VYKV+
Sbjct: 243 EIFAESQMEMMTKLKEYGFVINPLTKVFKTVEDIISYYRDIEERRYSLNYDIDGIVYKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQK+LG  +RSPRW I+HKF  ++A   L DIDIQ+GRTG LTPVARL P+ IGG +
Sbjct: 303 DLMLQKRLGFVSRSPRWAIAHKFPAEKAMALLEDIDIQVGRTGALTPVARLTPITIGGVV 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNA+LHNEDYIKG+   G+ +R GRDIR+GD V+++RAG+VIP+VVDI++ +R  D+  
Sbjct: 363 VTNASLHNEDYIKGIGHKGEPIREGRDIRIGDTVIIQRAGDVIPQVVDIVLEKRQKDSSA 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP C S  VR++        A  RCTGGL C AQ +ER++HFV+R+AF+IEGLG
Sbjct: 423 FVFPDLCPACGSHAVREVGE------AVRRCTGGLICPAQAIERIRHFVARNAFDIEGLG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           K+Q++FFF ++D A  I  PADIFTL+RRQ+ S  ++ENI GFG VSV  LYD+IN RR 
Sbjct: 477 KKQVEFFFHAQDEALCIHTPADIFTLERRQEKSLIRLENIEGFGTVSVRKLYDAINARRE 536

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII-------AHNNDDWLSLIR 600
           I L RF+F+LGIRHVG   AR LA+ Y +Y  F       +          N+ W+ L  
Sbjct: 537 IPLSRFLFALGIRHVGEVNARRLARAYQTYTAFETAAMEALMPCKQDNKEGNEAWMELTN 596

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  +G  +  AIV+FYQ   N   +  LL+E++P         SS I  K +VFTGTL  
Sbjct: 597 IEGIGPQVGSAIVDFYQEAHNREVLAVLLEEITPLDEVPIMTASSPIAEKIIVFTGTLAH 656

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R +A+    +LGA  S  LS+KTD+++ G   GSKL KAQ+ GV++++EE ++ L++ 
Sbjct: 657 MSRDEAKALAERLGAKTSGSLSKKTDLLVAGPGAGSKLTKAQEFGVQVIDEEAWMRLIKG 716

Query: 721 YNT 723
           +N 
Sbjct: 717 HNI 719


>gi|153009084|ref|YP_001370299.1| NAD-dependent DNA ligase LigA [Ochrobactrum anthropi ATCC 49188]
 gi|166216221|sp|A6WZR6|DNLJ_OCHA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|151560972|gb|ABS14470.1| DNA ligase, NAD-dependent [Ochrobactrum anthropi ATCC 49188]
          Length = 721

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 332/727 (45%), Positives = 470/727 (64%), Gaps = 21/727 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            P+E L+  +A  EL  L +EI++HD+ Y+   +P I D+EYDALKRR DAI   FP L 
Sbjct: 4   TPVEKLTEPEAVSELERLAREIAHHDELYHANDRPEISDAEYDALKRRNDAIEARFPHLV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R+   + P  ++G        +V H+ P LSL   ++ +D+R F+  +YRF     DNSI
Sbjct: 64  RT---DSPSLRVGTAPVSKFAQVVHARPMLSLGNAFSDDDVRDFVGSVYRFLGPLPDNSI 120

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  ++IRYE G  +  A RGDG +GE+V+  IR I  IP  L    P ++E
Sbjct: 121 AFTAEPKIDGLSMSIRYENGILISGATRGDGTTGENVTTNIRTIAEIPNRLPAGAPSVVE 180

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY++K+DFLALN++M A G++ Y NPRN A+G LR+L+     +R L FF +  G+
Sbjct: 181 VRGEVYMAKSDFLALNEQMAAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGE 240

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S++ A  Q  M++  R  GFPVN   ++ +    ++++Y  +   R+ L YDIDG+VYK
Sbjct: 241 MSDMPADTQMGMVEIFREWGFPVNPLTKRLHGADELLAHYRAIGLERAQLDYDIDGVVYK 300

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD   LQ +LG R+RSPRW I+HKF  +QA+T L  IDIQ+GRTG LTPVARLEP+ +GG
Sbjct: 301 VDRLDLQTRLGFRSRSPRWAIAHKFPAEQATTILRGIDIQVGRTGALTPVARLEPITVGG 360

Query: 366 ALITNATLHNEDYIKGLDASGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
            ++TNATLHNEDYIKG+   G+ +R    DIRVGD V+V+RAG+VIP++VD+++ +R  D
Sbjct: 361 VVVTNATLHNEDYIKGIGLKGERIRADEHDIRVGDTVIVQRAGDVIPQIVDVVLEKRKAD 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A PF FP  CP+C S  VR+         A +RCTGGL C+AQ +ER++HFVSR+AF+IE
Sbjct: 421 ATPFVFPHECPVCHSHAVREEGE------AVYRCTGGLTCAAQAVERIRHFVSRNAFDIE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSIN 543
           GLG++Q++FFF +ED    I+ PADIFTLQ+RQ  S   K+ENI GFG  SV  LYD+IN
Sbjct: 475 GLGEKQVEFFFHAEDDKLKIKSPADIFTLQQRQAESPLKKLENIEGFGATSVKKLYDAIN 534

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN--------NIIAHNNDDW 595
            RR I+L RF+F LGIRHVG   A+  A+ YLSY  F +           +     N+ W
Sbjct: 535 DRREIALHRFLFGLGIRHVGEVNAKRFARAYLSYAAFEEAALEAVPPKEGDRTDKGNEAW 594

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVF 654
             LI V  +G I+A+A+V+FY  P N   ++ L K     +      +  S +E K +VF
Sbjct: 595 QELIAVEGIGSIVAEAVVDFYAEPHNREVLDNLFKAGVTPVDEVALVSTGSPVEGKTVVF 654

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG+L+++ R +A+    + GA  +  +S+KTD+++ G   GSKL KA +LG+++++E+ +
Sbjct: 655 TGSLERMSRDEAKAMAERYGAKTAGSVSKKTDLVVAGPGAGSKLAKASELGIEVIDEDAW 714

Query: 715 LFLLQQY 721
             L+ + 
Sbjct: 715 FTLVGEE 721


>gi|158421773|ref|YP_001523065.1| NAD-dependent DNA ligase [Azorhizobium caulinodans ORS 571]
 gi|190359227|sp|A8IGY0|DNLJ_AZOC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|158328662|dbj|BAF86147.1| NAD-dependent DNA ligase [Azorhizobium caulinodans ORS 571]
          Length = 739

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 314/733 (42%), Positives = 459/733 (62%), Gaps = 30/733 (4%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +  LS  +A  E ++L QEI+ HD  YYQ   P+I D++YD L+RR + I   FP L  
Sbjct: 14  AVSDLSATEASDEHAALSQEIASHDARYYQEDAPVISDADYDRLRRRYEDIEARFPALKN 73

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
               +    K+G   +    KV H +P LSL+  ++ E++ +F+ R+ RF    +   + 
Sbjct: 74  D---DSLSRKVGAAPSAKFAKVVHQVPMLSLQNAFSDEEVEEFVARVRRFLNLAESAELA 130

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           FT EPKIDG   ++RYE G  V AA RGDG  GEDV+A +R I  IP  L+   +P+II+
Sbjct: 131 FTAEPKIDGLSCSLRYEGGVLVRAATRGDGTQGEDVTANVRTIAEIPHRLTGAGVPDIID 190

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           +RGEVY+ K DFLALN      G+  +ANPRNAA+G LR+L+P    +R L FF +  G+
Sbjct: 191 IRGEVYMGKADFLALNARQEEAGKPVFANPRNAAAGSLRQLDPEITRSRPLRFFAYAWGQ 250

Query: 246 TSEIFAK-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                    Q+E++   R  G P N    +     G++++Y ++ + R++L YDIDG+VY
Sbjct: 251 AEPGPPGASQHEVVDAFRRFGLPTNPLTIRVTDAAGLLAHYRKIGAERASLGYDIDGVVY 310

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD  +LQ++LG  +RSPRW I+HKFA +QA+T +  I+IQ+GRTG LTPVA+L PV +G
Sbjct: 311 KVDSLALQERLGFVSRSPRWAIAHKFAAEQATTVIEAIEIQVGRTGALTPVAKLTPVTVG 370

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++NATLHNEDYI+ +  +G+ +R G DIRVGD V+V+RAG+VIP+VV +++++R   
Sbjct: 371 GVVVSNATLHNEDYIRAIGGNGEEIREGIDIRVGDTVVVQRAGDVIPQVVSVVLDKRPAG 430

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A  + FP  CP+C S+ VR+++PKTGK  A  RCTGGL C AQ +ERL+HFVSR+AF+IE
Sbjct: 431 ATAYQFPHHCPVCNSQAVREVDPKTGKQDAVRRCTGGLICPAQAVERLRHFVSRNAFDIE 490

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++Q   F++ +     I  PADIF LQ R + S +K+EN  G+G  S  NL+ +I  
Sbjct: 491 GLGEKQAHAFYEWK----LIAEPADIFRLQARNEQSLSKLENREGWGRTSAQNLFAAIEA 546

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE-------------------IN 585
           RR I+L+RFIF+LGIRHVG   A+ LA++Y S +                          
Sbjct: 547 RRTIALDRFIFALGIRHVGETNAKRLARHYGSVEALRDAAIGAEMPTEMEEASEETPPTR 606

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
                 N+ W  +  +  +G ++A+A+VEF++ P N   VE LLKEV+P         +S
Sbjct: 607 RRKPQGNEVWQEMTDIDGIGAVVAEAVVEFFREPHNRQVVEELLKEVTPQP-LEAVASTS 665

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +  K +VFTG+L+++ R +A+    +LGA V+  +S KTD+++ G   GSKLEKA+ LG
Sbjct: 666 PVSGKTVVFTGSLERMTRDEAKAMAERLGAKVAGSVSGKTDLLVAGPGAGSKLEKARSLG 725

Query: 706 VKIMNEEQFLFLL 718
           VK + E+++  L+
Sbjct: 726 VKTITEDEWFDLV 738


>gi|49475845|ref|YP_033886.1| NAD-dependent DNA ligase LigA [Bartonella henselae str. Houston-1]
 gi|81647763|sp|Q6G2R5|DNLJ_BARHE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|49238653|emb|CAF27899.1| DNA ligase [Bartonella henselae str. Houston-1]
          Length = 716

 Score =  606 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 334/727 (45%), Positives = 473/727 (65%), Gaps = 20/727 (2%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K +   I+ L+  +A  EL  L +EI+ HD  Y +  +P I D+EYDAL+RR   I  
Sbjct: 1   MHKDE---IQNLTALEAASELEWLAKEITRHDVLYNRNDQPEISDAEYDALRRRNAEIEA 57

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP+L R   P+ P +KIG  ++    K  HS P LSL+  ++ ED+ +F+ R+ RF + 
Sbjct: 58  LFPELIR---PDSPSHKIGAPISEKFEKSVHSQPMLSLDNAFSSEDVSEFMERVRRFLRL 114

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
            +   +  T EPKIDG  +++RYE+G+ V AA RGDG+ GE+V+A  R I  IP+VL   
Sbjct: 115 PETQMLEITAEPKIDGLSLSLRYEQGRLVCAATRGDGYVGENVTANARTISDIPQVLQGK 174

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239
            P+IIEVRGEVY+ + DF ALN      G+  +ANPRNAA+G LR+L+     +R L FF
Sbjct: 175 FPDIIEVRGEVYMRRADFQALNVNQQEKGKLAFANPRNAAAGSLRQLDSRITASRKLQFF 234

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ SEIFA+ Q  M++K++  GF +N  +++  +   ++SYY++++  R  L YDI
Sbjct: 235 AYACGEVSEIFAESQMGMMEKLKEYGFVINPLIKKIKSLEELISYYHDIEERRHALSYDI 294

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKV++  LQ +LG  +RSPRW I+HKF  ++A T L  IDIQ+GRTG LTPVARL 
Sbjct: 295 DGIVYKVNDLMLQMRLGFVSRSPRWAIAHKFPAEKAMTVLEGIDIQVGRTGALTPVARLA 354

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           P+ +GG +ITNA+LHNEDYIKG+ + G+ +R G DIRVGD V+V+RAG+VIP+++DI+  
Sbjct: 355 PITVGGVVITNASLHNEDYIKGIGSKGEPIREGNDIRVGDTVIVQRAGDVIPQIIDIVAE 414

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  DA  F FP  CP C S  VR++        A  RCTGGL C AQ +ER++HFVSR+
Sbjct: 415 KRSKDASAFVFPYLCPACGSYAVREIGE------AVRRCTGGLICPAQAIERIRHFVSRN 468

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+IEGLGK+Q++FFF+ +D    I  PADIFTLQRRQ+ S   +EN+ GFG VSV  LY
Sbjct: 469 AFDIEGLGKKQVEFFFQIQDETLCIHTPADIFTLQRRQEKSLVHLENMEGFGTVSVRKLY 528

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI-------NNIIAHNN 592
           D+IN RR I L RF+F+LGIR+VG   AR LA+ Y +Y  F           + +    N
Sbjct: 529 DAINARRKIPLSRFLFALGIRYVGEVNARRLARAYQNYTAFETAAMAATMPDDKVGKEGN 588

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
           + W+ L  +  +G  + +AI++FY+   N   +  LL EV+P         SS I  K +
Sbjct: 589 EAWMELTNIEGIGPQVGEAIIDFYKEVHNREVLSGLLCEVTPLDEESVMTASSPIAGKII 648

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           VFTGTL ++ R +A+    +LGA  S  LS+KT++++ G   GSKL KAQ+LGV++++EE
Sbjct: 649 VFTGTLTRMSRDEAKALAERLGAKTSGSLSKKTNLLVAGVGGGSKLTKAQELGVEVIDEE 708

Query: 713 QFLFLLQ 719
            +L L++
Sbjct: 709 AWLQLIE 715


>gi|260433791|ref|ZP_05787762.1| DNA ligase, NAD-dependent [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417619|gb|EEX10878.1| DNA ligase, NAD-dependent [Silicibacter lacuscaerulensis ITI-1157]
          Length = 708

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 299/715 (41%), Positives = 445/715 (62%), Gaps = 13/715 (1%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           IP++ L+ +QA++EL+ L   +   ++ Y+    P I D+EYDALKRR   I   FP L 
Sbjct: 5   IPVQELTEDQAKEELARLASALLRANELYHGQDAPEISDAEYDALKRRNLEIEARFPHLK 64

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R   P+ P  ++G   +    KV HS+  +SL   ++  D+R F+  I ++    +D+  
Sbjct: 65  R---PDSPTEQVGARPSEGFDKVRHSVRMMSLGNAFDETDVRDFVRSIQKYLGLSEDDVP 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  +++RYE G  V AA RGDG  GE+V+A    +  IP+ L+   P+I+E
Sbjct: 122 EFTAEPKIDGLSLSLRYENGTLVQAATRGDGEVGENVTANALTVGDIPKALTGA-PKILE 180

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+S  DF  LN +    G K +ANPRNAA+G LR+L+P    +R L FF +  G+
Sbjct: 181 VRGEVYMSHEDFARLNQKQSESGGKLFANPRNAAAGSLRQLDPEVTRSRPLRFFAYAWGE 240

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            SE   + Q E L ++  LGF  N   R   +   ++++Y  ++  R+TL YDIDG+VYK
Sbjct: 241 LSEPLGQTQIEGLARLASLGFATNGLTRLCRSVEDMLAHYRTIEEQRATLGYDIDGVVYK 300

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++ +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG
Sbjct: 301 VNDLALQARLGYRSTTPRWAIAHKFPAETAWTRLEAIDIQVGRTGALSPVARLHPVTVGG 360

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYI G DA G V+R G+DIRVGD V V RAG+VIPK+ D+ +++R   A
Sbjct: 361 VVVSNATLHNEDYIAGRDAKGNVIRDGKDIRVGDWVQVYRAGDVIPKIADVDLSKRPDWA 420

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            PF FP+ CP C S  +R+         +  RCTGG+ C AQ +E+LKHFVSR AF+IEG
Sbjct: 421 VPFEFPTKCPECGSDAIREEG------DSVRRCTGGIICPAQAVEKLKHFVSRKAFDIEG 474

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F+   DP   ++ P DIFTLQ+R + +  K+ N  G+G  SV  L+ +I+++
Sbjct: 475 LGTKQIEMFYD--DPDLPVKTPVDIFTLQQRDEANLNKLANRKGWGRQSVAKLWAAIDEK 532

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R + L R +F+LGIRHVG   +  LA +Y S++ F + +         +W  L+ +  VG
Sbjct: 533 RTVPLARLLFALGIRHVGEAASNLLANHYGSWEAFEKAMTAAADFEGPEWQELLSIDGVG 592

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +++A+ +V  +        ++ L+ +++           S +  K +VFTGTL+K+ R +
Sbjct: 593 EVMARTLVSTFAQEAERKTIDDLVAQLNVLDAERPDTSDSPVAGKTIVFTGTLEKMTRAE 652

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+     LGA VS  +S+KTDI++ G   GSK +KA +LGVK+++E+++L L+  
Sbjct: 653 AKARAEALGAKVSGSVSKKTDIVVAGPGAGSKAKKAAELGVKVLDEDEWLHLIGD 707


>gi|121602535|ref|YP_989218.1| NAD-dependent DNA ligase LigA [Bartonella bacilliformis KC583]
 gi|166215397|sp|A1UTB5|DNLJ_BARBK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120614712|gb|ABM45313.1| DNA ligase, NAD-dependent [Bartonella bacilliformis KC583]
          Length = 717

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 323/723 (44%), Positives = 471/723 (65%), Gaps = 16/723 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
             + L+  +A +EL  L +EI+ HD  Y  + +P I D+ YDAL+RR   I   FP+L R
Sbjct: 4   DAKNLTALEAERELEWLAKEIARHDVLYNNHDQPEISDARYDALRRRNIEIETLFPELVR 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           +   + P  K+G  ++    K  H+   LSL+  ++ ED+ +F+ R+ RF +     ++ 
Sbjct: 64  A---DSPSYKVGAPISERFEKSVHAQAMLSLDNAFSSEDVHEFVERVRRFLRLPVTKTLE 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            T EPKIDG  +++RYEKGK V AA RGDG+ GE+V+   R +  IP+VL  + P+I+EV
Sbjct: 121 MTAEPKIDGLSLSLRYEKGKLVCAATRGDGYVGENVTVNARTLSDIPQVLQGDFPDILEV 180

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246
           RGEVY+  +DF  LN +    G+  +ANPRNAA+G LR+L+      R L FF +G G+ 
Sbjct: 181 RGEVYMRHSDFQDLNVDQQEKGKLVFANPRNAAAGSLRQLDTRMTARRKLKFFAYGWGEV 240

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE+ AK Q EM++K++  GF +N   +       ++SYY+ ++  R  L YDIDG+VYKV
Sbjct: 241 SEMPAKSQMEMVKKLKEYGFVINPLTKVFKAVEDLISYYHFIEEGRQHLDYDIDGVVYKV 300

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++  LQ +LG  +RSPRW I+HKF  ++A   L +IDIQIGRTG LTPVARL P+ +GG 
Sbjct: 301 NDLLLQTRLGNVSRSPRWAIAHKFPAEKAMALLENIDIQIGRTGALTPVARLAPITVGGV 360

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++TNA+LHNEDYIKGL +  + +R GRDIR+GD V+V+RAG+VIP+++D+I+ +R   A 
Sbjct: 361 VVTNASLHNEDYIKGLGSKSESIREGRDIRIGDTVIVQRAGDVIPQIIDVIIEKRPKGAS 420

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           PF FPS CP C S  VR++        A  RCTGGL C AQ +ER++HFVSR+AF+IEGL
Sbjct: 421 PFVFPSLCPACGSHAVREVGE------AVRRCTGGLICPAQAIERIRHFVSRNAFDIEGL 474

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++Q++FFF ++D    I  PADIFTLQ+RQ+ S T++EN+ GFG +SV  LYD+IN RR
Sbjct: 475 GEKQVEFFFHAQDETLRIHSPADIFTLQKRQEKSLTRLENMEGFGTLSVRKLYDAINARR 534

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNII-----AHNNDDWLSLIR 600
            I L RF+F+LGIRHVG   AR LA+ Y +Y  F    +  ++        N++WL L  
Sbjct: 535 KIPLSRFLFALGIRHVGEVNARRLARAYQNYNAFETVAMTALMPCNKEDKGNEEWLELTS 594

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  +G  + +AI++FYQ   N   + +LL+EV+P          S +  K +VFTGTL  
Sbjct: 595 IEGIGVRVGKAIIDFYQETHNRDVLSSLLQEVTPLPEEAAVADYSPVAGKTIVFTGTLVH 654

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R + +    +LGA  S+ +S+KTD+++ G   GSKL KA++LG++IM+EE +L L+ +
Sbjct: 655 MSRDEVKALAERLGAKASSSISKKTDLLVAGIGAGSKLTKAKELGIEIMDEESWLQLINE 714

Query: 721 YNT 723
           ++ 
Sbjct: 715 HHI 717


>gi|319408814|emb|CBI82471.1| DNA ligase [Bartonella schoenbuchensis R1]
          Length = 718

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 331/721 (45%), Positives = 469/721 (65%), Gaps = 16/721 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            ++ L+  +A  EL  L +EI+ HD  Y    +P I D++YDAL+RR   I   FP+L R
Sbjct: 5   AVKNLTALEAASELEWLAKEIARHDVLYNNNDQPEISDAQYDALRRRNTEIEALFPELIR 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           +   + P  KIG  ++    K  H+   LSL+  ++ ED+ +F+ R+ RF +     ++ 
Sbjct: 65  T---DSPSYKIGAPVSEKFEKSVHAQAMLSLDNAFSAEDVSEFVERVRRFLRLPSTQTLE 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            T EPKIDG  +++RYE+GK V AA RGDG++GE+V+   R I  IP+VL    P+IIEV
Sbjct: 122 MTAEPKIDGLSLSLRYEQGKLVRAATRGDGYTGENVTTNARTISDIPKVLQGEFPDIIEV 181

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246
           RGEVYI + DF  LN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ 
Sbjct: 182 RGEVYIRQEDFQVLNINQQKEGKIAFANPRNAAAGSLRQLDSRITASRKLKFFAYAWGEV 241

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE+ AK Q EM+ K++  GF VN   +       ++SYY+ ++  R +L YDIDG+VYKV
Sbjct: 242 SEMPAKSQMEMVNKLKEYGFIVNPFTKVFEKVEDLISYYHFIEEQRQSLSYDIDGVVYKV 301

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++  LQ +LG  +RSPRW I+HKF  ++A+  L  IDIQ+GRTG LTPVARL P+ +GG 
Sbjct: 302 NDLGLQMRLGFVSRSPRWAIAHKFPAEKATALLEGIDIQVGRTGALTPVARLAPITVGGV 361

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++TNATLHNEDYIKG+   G+ +R GRDIR+GD V+V+RAG+VIP++VDII ++R  DA 
Sbjct: 362 VVTNATLHNEDYIKGVGRKGEPIREGRDIRIGDTVIVQRAGDVIPQIVDIISSKRPKDAV 421

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           PF FP  CP C S  VR++        A +RCTGGL CSAQ +ER++HFVSR+AF+IEGL
Sbjct: 422 PFVFPHHCPACGSHAVREVGE------AVYRCTGGLICSAQAIERIRHFVSRNAFDIEGL 475

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           GK+Q++FFF  +D    IR P DIFTL++RQ+ + T++ENI GFG +SV  L+D+IN RR
Sbjct: 476 GKKQVEFFFNIQDETLCIRSPVDIFTLEKRQKKALTRLENIEGFGSLSVRKLFDAINARR 535

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSLIR 600
            I L RF+F+LGIRHVG   A+ LA+ Y +Y  F   +   I         N++W  LI 
Sbjct: 536 EIPLSRFLFALGIRHVGEVNAQRLARVYRNYTAFEAAVMAAIVPHDKTDEGNEEWTDLIS 595

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  +G  + +AI++FYQ   N   + ALL+EV+P          S I  K +VFTGTL  
Sbjct: 596 IEGIGVRVGRAIIDFYQEAHNRDVLSALLQEVTPLPEEAIATDYSPIAGKIIVFTGTLMS 655

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R +A+    +LGA  S  +S+KTD++I G   GSKL KA++LGV+I++E+ +  L+++
Sbjct: 656 MSRDEAKALAERLGAKTSGSISKKTDLLIAGLGAGSKLTKAKELGVEIIDEDSWSQLIKE 715

Query: 721 Y 721
           Y
Sbjct: 716 Y 716


>gi|163731899|ref|ZP_02139346.1| DNA ligase, NAD-dependent [Roseobacter litoralis Och 149]
 gi|161395353|gb|EDQ19675.1| DNA ligase, NAD-dependent [Roseobacter litoralis Och 149]
          Length = 705

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 287/715 (40%), Positives = 440/715 (61%), Gaps = 15/715 (2%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
            +P+++L+ + A +ELS L + +   +  Y+    P + D+EYDA KRR  A+   FP L
Sbjct: 3   FVPLDSLNEKAAEEELSRLAELLEQANTAYHTKDAPFMSDAEYDAYKRRNLALEDRFPHL 62

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            R+   + P + +G   +    KV+HS+  LSL   ++ ED+  F+ RI +     D   
Sbjct: 63  KRA---DSPTDVVGAAPSAGFAKVSHSMAMLSLANAFDDEDVFDFVQRIRKHLGLSDAEP 119

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + FT EPKIDG  +++RYE G  V AA RGDG  GE+V+A    I  IP+ +    P+++
Sbjct: 120 LHFTSEPKIDGLSLSLRYENGALVQAATRGDGAVGENVTANALTINDIPQRVPNA-PDVL 178

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLG 244
           EVRGEVY+S  DF ALN++  A G K +ANPRNAA+G LR+L+          FF +  G
Sbjct: 179 EVRGEVYMSHTDFEALNEKQNAAGAKAFANPRNAAAGSLRQLDARITQNRPLRFFAYAWG 238

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             +    K Q + +++++ LGF  N    + +    +++ Y  ++  R++L YDIDG+VY
Sbjct: 239 TLTAPLGKTQSDSIERLKNLGFQTNELTDRCDGPEALLAQYRRIEERRASLDYDIDGVVY 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD+  LQ++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL+P+ +G
Sbjct: 299 KVDDLDLQRRLGFRSTTPRWAIAHKFPAELAWTELQSIDIQVGRTGALSPVARLKPITVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++NATLHNEDYI G D  G V+R G+DIR GD V V RAG+VIPKV D+ +++R  +
Sbjct: 359 GVVVSNATLHNEDYIAGRDNKGGVIRDGKDIRAGDYVQVYRAGDVIPKVADVDLDKRPAE 418

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A PF FP+ CP C S  +R+         A  RCTGGL C AQ +ERLKHFVSR AF+I+
Sbjct: 419 AIPFVFPTTCPECGSDALREAG------DAVRRCTGGLICPAQAVERLKHFVSRAAFDID 472

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG +Q++ F+K       +  PADIFTL+ R ++   +++N  G+G+ S TNL+D+I++
Sbjct: 473 GLGAKQIEQFYKD----GWVSEPADIFTLRDRYESGMQQLKNRDGWGEKSATNLFDAIDE 528

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           +R I L R +F+LGIRHVG   +  +A++Y ++  F +          D W  L+ +  V
Sbjct: 529 KREIPLARLLFALGIRHVGEAASNLIAQHYSTFDAFEKSTLAAQIEEGDAWDDLLSIDGV 588

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G ++AQ++V     P    +++ L+ ++     +   +  S +  K +VFTGTL+++ R 
Sbjct: 589 GTVMAQSLVHTMGQPAERASIDRLVAQLKVQPSKPIVSDGSPVAGKTVVFTGTLERMTRA 648

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A+     LGA V+  +S KTD ++ G   GSK +KA +LG++ ++E+ +L L++
Sbjct: 649 EAKSRAESLGAKVAGSVSAKTDFLVAGPGAGSKAKKAVELGIRTLDEDGWLALIE 703


>gi|323702801|ref|ZP_08114460.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574]
 gi|323532189|gb|EGB22069.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574]
          Length = 669

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 250/708 (35%), Positives = 385/708 (54%), Gaps = 48/708 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + +  +  L +EI+YH+  YY    P I D +YD L +    + +A+P+L     P+ P 
Sbjct: 7   EIKARVEELRREINYHNHQYYVLDNPTITDGQYDQLVQELLRLENAYPELV---SPDSPT 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GGE+      V H +P LSL   ++  DLR+F  R+           + + LE KID
Sbjct: 64  QRVGGEIQKGFTAVQHRVPMLSLSNAFSENDLREFDRRVRSNL---PGEEVEYVLELKID 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I++ YE+G FV  A RGDG  GED++A +R I  IP  +  +IP  +EVRGE Y+ K
Sbjct: 121 GLAISLWYEQGVFVRGATRGDGELGEDITANLRTIKAIPLRIKESIP-FLEVRGEAYMPK 179

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F+ LN+     G   +ANPRNAA+G LR+L+P    +R L+ F++ +G          
Sbjct: 180 ESFVRLNEAREEAGEPLFANPRNAAAGSLRQLDPRVTASRNLSVFMYAIGHLEGANPGTH 239

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L  ++ LGF VN   +       ++   ++ +  R  LPY IDGLV KV+    Q++
Sbjct: 240 ARLLGWLKDLGFRVNQHYKLCKDIEEVIRQIDKWQEQRFELPYAIDGLVIKVNSLDQQQR 299

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SPRW I++KF  +QA + + DI I++GRTG+LTP A LEPV + G  ++ ATLH
Sbjct: 300 LGATLKSPRWAIAYKFPAEQAVSTIKDIIIRVGRTGVLTPTAILEPVQLAGTTVSKATLH 359

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED I+            +DIR+GD+ LV++AG++IP+VV +    R    +PF+ PS C
Sbjct: 360 NEDIIR-----------QKDIRIGDQALVQKAGDIIPEVVLVFPERRTGQEKPFTMPSTC 408

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + VVR          AAHRCT     +  + E + HFVSR A +I GLG+  ++  
Sbjct: 409 PECNAPVVRLPGE------AAHRCTNKNCPAISR-EGIIHFVSRGAMDIMGLGESIVNQL 461

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                 A  ++ PAD++ L+            +   G  S  NL ++I   ++ SL + +
Sbjct: 462 IM----AGLVQDPADLYDLKYEDLIK------LERMGARSSQNLLNAIAASKHNSLAQLL 511

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGIRHVG   A+ LA+++ S                     L  +P +G  IA++IV+
Sbjct: 512 VALGIRHVGERAAKILARHFGSMSALMAAT----------VEDLTVIPEIGPKIAESIVD 561

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++  P N   ++ L +        +++       +  K  V TGTL+   R +AQ  + +
Sbjct: 562 YFARPENKTLIQRLDRAGVNMEEANQQAEPGQQPLAGKTFVITGTLEGFSRQEAQRAIEE 621

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           LG  VS  +S+KTD ++VG+NPGSK +KAQQLG+ I+NE++F+ LL+Q
Sbjct: 622 LGGKVSGSVSKKTDYVVVGENPGSKYDKAQQLGIPILNEQEFVALLKQ 669


>gi|110634347|ref|YP_674555.1| DNA ligase, NAD-dependent [Mesorhizobium sp. BNC1]
 gi|123162160|sp|Q11GT5|DNLJ_MESSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110285331|gb|ABG63390.1| DNA ligase, NAD-dependent [Chelativorans sp. BNC1]
          Length = 703

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 298/713 (41%), Positives = 438/713 (61%), Gaps = 18/713 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           IP++ L+ EQA+ EL+ L QEI  HD  YY    P + D+EYDAL+RR  AI  AFP+L 
Sbjct: 6   IPVDELTEEQAKDELARLAQEIGRHDRLYYSEDAPEVSDAEYDALRRRNLAIEQAFPNLI 65

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R+   + P  +IG        KV H +P LSL+  +  +D+  F+ R+ RF + +    I
Sbjct: 66  RA---DSPSKRIGAPAVEKFEKVRHKVPMLSLDNAFTDDDVVDFVARVRRFLKMEPHAPI 122

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
             T EPKIDG  ++IRYE G+ V AA RGDG  GE+V+A  RA+  IP VLS + PEI+E
Sbjct: 123 AMTAEPKIDGLSLSIRYENGRLVSAATRGDGQVGENVTANARAVADIPNVLSGDFPEILE 182

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY++  DFLALN+   A G++ Y NPRN A+G LR+L+ +    R L FF +  G+
Sbjct: 183 VRGEVYMTHRDFLALNERQRAEGKQTYVNPRNTAAGSLRQLDASITAARPLKFFAYAWGE 242

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            SE+ ++ Q  M++ ++  GF  N  +    T   ++ +Y+ ++  R+TL YDIDG+VYK
Sbjct: 243 VSEMPSQTQMGMVEALKSYGFRTNKLMCLCETARELLEHYHAIEERRATLGYDIDGVVYK 302

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++ +LQ++LG  +RSPRW I+HKFA ++A T L DIDIQ+GRTG LTPVARLEPV +GG
Sbjct: 303 VNDLALQQRLGYVSRSPRWAIAHKFAAEKAFTILRDIDIQVGRTGALTPVARLEPVTVGG 362

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++TNATLHN + I+ L            I++GD V V+RAG+VIP+++    + R  DA
Sbjct: 363 VVVTNATLHNAEEIERL-----------GIKIGDTVQVQRAGDVIPQILGYAEDRRPADA 411

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F FPS CP      V   +   G      RC+G  AC  Q++E L+ FVSR AF+IEG
Sbjct: 412 KEFVFPSVCPCELKTPVVRDSTAGGGEGVVRRCSGEFACPFQRIEHLRLFVSRRAFDIEG 471

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++Q++FFF+  DP   ++ PADIFTL  R   +  K+++  G+G VS  NL+ +I  +
Sbjct: 472 LGEKQIEFFFR--DPDLPVKSPADIFTLAERDAQNIKKLKDKEGWGTVSAGNLFAAIEAK 529

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R I L+R I+ LGIRHVG   A +LA+ Y S++ F      I   +      +  +  +G
Sbjct: 530 RTIPLDRMIYGLGIRHVGERTAVTLARGYGSWKAFHDSALAIAGGDLSAREEMDALEDIG 589

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           D +  AI  ++    N   VEAL  +V+           S +  K +VFTG L+++ R +
Sbjct: 590 DAVIDAIATYFAEEHNCRLVEALAAQVNVLEAERPV-ADSPVAGKTIVFTGALERMSRDE 648

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A++   +LGA V+  +S KTD+++ G   GSKL+KA +LG+++++E+ +   +
Sbjct: 649 AKDMAERLGAKVAGSVSSKTDLVVAGPGAGSKLKKAAELGIEVIDEDMWFQRI 701


>gi|110679832|ref|YP_682839.1| DNA ligase, NAD-dependent [Roseobacter denitrificans OCh 114]
 gi|123172419|sp|Q166E0|DNLJ_ROSDO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|109455948|gb|ABG32153.1| DNA ligase, NAD-dependent [Roseobacter denitrificans OCh 114]
          Length = 705

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 295/715 (41%), Positives = 436/715 (60%), Gaps = 15/715 (2%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             P+++L+ + A+KELS L   +   +  Y+    PII D+++DA KRR  AI   FP L
Sbjct: 3   FAPLDSLTEKAAKKELSKLADLLDQANTAYHANDAPIISDADFDAYKRRNLAIEERFPHL 62

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            R+   + P +++G   +    KV HSI  LSL   ++  D+  F+ RI +     D  +
Sbjct: 63  KRA---DSPTDRVGAAPSAGFSKVVHSIAMLSLANAFDEADVSDFVQRIRKHLGLSDIEA 119

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + FT EPKIDG  +++RYE G  V AA RGDG  GE+V+   R IP IP  +S   P+++
Sbjct: 120 LSFTSEPKIDGLSLSLRYENGTLVQAATRGDGAIGENVTENARTIPDIPEQISNA-PDVL 178

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLG 244
           EVRGEVY+S  DF ALN    + G K +ANPRNAA+G LR+L+          FF +  G
Sbjct: 179 EVRGEVYMSHADFEALNARQASAGAKLFANPRNAAAGSLRQLDARITQSRPLRFFAYAWG 238

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             SE   K Q + +++++  GF  N+   + N    +++ Y  ++  R++L YDIDG+VY
Sbjct: 239 TLSEPLGKTQMQSIERLQSFGFQTNDLTEKCNGPEELLAQYRRIEERRASLDYDIDGVVY 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD+  LQ++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL+PV +G
Sbjct: 299 KVDDLDLQRRLGFRSTTPRWAIAHKFPAELAWTELQGIDIQVGRTGALSPVARLKPVTVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++NATLHNEDYI G D  G V+RGG+DIRVGD V V RAG+VIPKV D+ + +R  D
Sbjct: 359 GVVVSNATLHNEDYIAGRDNKGDVIRGGKDIRVGDFVQVYRAGDVIPKVADVDLKKRPAD 418

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A P+ FP+ CP C S  +R+         A  RCTGGL C AQ +ERLKHFVSR AF+I+
Sbjct: 419 AIPYVFPATCPECGSDALREAG------DAVRRCTGGLICPAQAVERLKHFVSRAAFDID 472

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG +Q++ F+K       I  PADIFTL+ R  +   +++N  G+G+ S  NL+D+I+ 
Sbjct: 473 GLGAKQIEQFYKD----GWISEPADIFTLRDRFGSGIQQLKNRDGWGEKSANNLFDAIDD 528

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           +R I L R IF+LGIRHVG   +  +A++Y ++  F + +      + + W  L+ +  V
Sbjct: 529 KRQIPLARLIFALGIRHVGEAASNLIAQHYSTFDAFEKSMLAAQDKDGEAWDDLLSIDGV 588

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G ++AQ+++          +++ L+ ++            S +  K +VFTGTL K+ R 
Sbjct: 589 GTVMAQSVIHAMGQAAERASIDRLVAQLDVQPSEAVVTDGSPVAGKTVVFTGTLSKMTRA 648

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A+     LGA V+  +S KTD ++ G   GSK +KA +LGV+ ++E+ +L L++
Sbjct: 649 EAKSRAESLGARVAGSVSAKTDFLVAGPGAGSKAKKAAELGVQTLDEDGWLALIE 703


>gi|49474446|ref|YP_032488.1| NAD-dependent DNA ligase LigA [Bartonella quintana str. Toulouse]
 gi|81646941|sp|Q6FZ81|DNLJ_BARQU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|49239950|emb|CAF26355.1| DNA ligase [Bartonella quintana str. Toulouse]
          Length = 719

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 338/727 (46%), Positives = 471/727 (64%), Gaps = 20/727 (2%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K +   I+ L+  +A  EL  L +EI+ HD  Y +  +P I D+EYDAL+RR   I  
Sbjct: 1   MNKDE---IKNLTALEAESELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEA 57

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP+L RS   + P +KIG  ++    K  H+   LSL+  ++ ED+ +FI RI RF + 
Sbjct: 58  LFPELIRS---DSPSHKIGAPVSEKFEKSVHAQAMLSLDNAFSSEDICEFIVRIRRFLRL 114

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                +  T EPKIDG  +++RYEKG+ V AA RGDG+ GE+V+A  R I  IP+VL   
Sbjct: 115 PATQILEMTAEPKIDGLSLSLRYEKGRLVCAATRGDGYIGENVTANARTISDIPKVLRGE 174

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P+IIEVRGEVY+ + +F ALN      G+  +ANPRNAA+G LR+L+P    +R L+FF
Sbjct: 175 FPDIIEVRGEVYMRRENFQALNMSQQEKGKFVFANPRNAAAGSLRQLDPRITASRKLHFF 234

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ SE FA  Q EM++K++  GF +N   +   T   I+SYY++++  R +L YDI
Sbjct: 235 AYACGEVSETFAASQMEMMKKLKEYGFFINPLTKSFKTLEEIISYYHDIEECRHSLSYDI 294

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKV++  LQ +LG  +RSPRW ++HKF  ++A   L  IDIQ+GRTG LTPVARL 
Sbjct: 295 DGIVYKVNDLKLQMRLGFVSRSPRWAVAHKFPAEKAMALLEGIDIQVGRTGALTPVARLA 354

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           P+ IGG ++TNA+LHNEDYIKG+   G+ +R GRDIRVGD V+V+RAG+VIP++VDII  
Sbjct: 355 PITIGGVVVTNASLHNEDYIKGIGHKGESIREGRDIRVGDTVIVQRAGDVIPQIVDIIAE 414

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R   A  F FP  CP C S  VR++        +  RCTGGL C AQ +ER++HFVSR+
Sbjct: 415 KRPKGASAFVFPHLCPACGSHAVREVGE------SVRRCTGGLICPAQAIERIRHFVSRN 468

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+IEGLGK+Q++FFF  +D A  I  PADIFTLQRRQ+ +  ++EN+ GFG VSV  LY
Sbjct: 469 AFDIEGLGKKQVEFFFHIQDEALCIHTPADIFTLQRRQEKALVRLENMEGFGTVSVRKLY 528

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF----AQEI---NNIIAHNN 592
           ++IN RR + L RF+F+LGIRH+G   AR LA  Y +Y  F           + +    N
Sbjct: 529 NAINMRRKVPLSRFLFALGIRHIGEVNARRLAHAYQNYTAFETVAMAATMPYDKVGEEGN 588

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
           + WL L  +  +G  + +AI++FYQ   N   + ALL+EV+P    +    SS I  K +
Sbjct: 589 EAWLELTNIEGIGPQVGEAIIDFYQEAHNREVLAALLREVTPLDEENVMTASSPIAGKTI 648

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           VFTGTL ++ R +A+    +LGA  S  LS+KTD+++ G   GSKL KAQ LGV++++EE
Sbjct: 649 VFTGTLARMSRDEAKALAERLGAKTSGSLSKKTDLLVAGSAVGSKLAKAQGLGVEVIDEE 708

Query: 713 QFLFLLQ 719
            +L L++
Sbjct: 709 AWLQLIE 715


>gi|86749131|ref|YP_485627.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris HaA2]
 gi|123004307|sp|Q2IYJ4|DNLJ_RHOP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|86572159|gb|ABD06716.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris HaA2]
          Length = 714

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 303/725 (41%), Positives = 442/725 (60%), Gaps = 27/725 (3%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           +    I  L+  +A+ E   L  EI  H+  YYQ+  P + D+EYDAL+RR +AI   FP
Sbjct: 6   KPAPDIATLTKAKAKVEAMRLRLEIERHNSAYYQHDAPTVSDAEYDALRRRLEAIEAKFP 65

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           +L      + P   +G        KV H++P LSL   +  +++ +F+ R+ RF +    
Sbjct: 66  ELV---SASSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVTEFVERVQRFLRLDAV 122

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIP 182
            SI    EPKIDG  +++RYE G+ + AA RGDG +GEDV+A +R I  IP  L    IP
Sbjct: 123 PSI--VAEPKIDGLSLSLRYEHGELMRAATRGDGFTGEDVTANVRTIADIPTTLKAKTIP 180

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
              E+RGEVY+ K DFLALN      G   +ANPRN+A+G LR+ +     +R L FF +
Sbjct: 181 AACELRGEVYMLKQDFLALNKRQEEAGDTVFANPRNSAAGSLRQKDVAITASRPLKFFAY 240

Query: 242 GLGKT--SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
             G+     +    Q++ML  ++  GF VN  +    +    +++Y  +   R+ LPYDI
Sbjct: 241 AWGEMSDYPMDEPTQFKMLGWLKQAGFVVNPEITLCTSVDDALAFYRRIGEQRAALPYDI 300

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD    Q++LG  +RSPRW I+HKFA +QA+T L  IDIQ+GRTG LTPVARL+
Sbjct: 301 DGVVYKVDRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLQ 360

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG ++ NATLHNEDYIKGL   G  +R G DIR GD V+V+RAG+VIP++V ++++
Sbjct: 361 PVTVGGVVVQNATLHNEDYIKGLGNDGSPLRDGVDIREGDTVVVQRAGDVIPQIVSVVLD 420

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  DA P+ FP  CP+C S   R+         A  RCTG L C AQ +ERLKHFVSR 
Sbjct: 421 KRPADATPYHFPHKCPVCGSHAAREEGE------AVWRCTGALICPAQAVERLKHFVSRL 474

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+I+GLG++Q+  F +       ++ PADIFTLQ R   +  K+E+I G+G+ SV NL+
Sbjct: 475 AFDIDGLGEKQIVLFHER----GWVKEPADIFTLQAR--NAALKLEDIEGYGETSVRNLF 528

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------HNND 593
            +I+ RR I L R IF+LGIRHVG   A+ LA++Y +   F   +           + ++
Sbjct: 529 AAIDARRTIELHRLIFALGIRHVGEGNAKLLARHYGTLDAFLAAMRAAAEGQTEEGNTSE 588

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653
            +  L  +  +G+++A A+VEF+  PRN+ A++ALL E+   +   +    + +  K +V
Sbjct: 589 AYQDLDNIAGIGEVVAAAVVEFFAEPRNVAALDALLAELKDVLPAEQARRDTAVAGKTVV 648

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           FTG+L K  R +A+    +LGA V+  +S+KTD ++ G + GSKL KA+ LGV ++ E++
Sbjct: 649 FTGSLTKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGADAGSKLTKAKDLGVAVLTEDE 708

Query: 714 FLFLL 718
           +L L+
Sbjct: 709 WLALI 713


>gi|300021787|ref|YP_003754398.1| DNA ligase, NAD-dependent [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523608|gb|ADJ22077.1| DNA ligase, NAD-dependent [Hyphomicrobium denitrificans ATCC 51888]
          Length = 712

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 289/709 (40%), Positives = 441/709 (62%), Gaps = 23/709 (3%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
               E++ L  EI  HD+ YY+   P I D++YDAL+RR   +  A P+L R+     P 
Sbjct: 22  SVEDEIARLSAEIERHDELYYRNDAPEISDADYDALRRRLTQLEDAHPELKRAG---SPS 78

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     +  K+ H +P LSL   ++ +D+  F+ R+ RF    + + +  T EPKID
Sbjct: 79  EKVGSAPVAAFGKIAHDVPMLSLGNAFDDQDVVDFVQRVRRFLNLGESDELEITAEPKID 138

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYIS 194
           G  I+IRYE G+ V AA RGDG  GE+V+A ++ I  IP +L     P++I++RGE+Y+ 
Sbjct: 139 GLSISIRYEGGRLVQAATRGDGAEGENVTANVKTIKDIPHLLVGKDVPDVIDIRGEIYLG 198

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
             DF  LN    A G K +ANPRNAA+G LR+L+ +    R L FF +  G  S++ +  
Sbjct: 199 HKDFEKLNAAQAASGGKVFANPRNAAAGSLRQLDSSITAQRPLQFFAYAWGAASKLPSDT 258

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q  ++   +  G PVN  +    +   ++ YY  ++S R+ L YDIDG+VYKV+    Q+
Sbjct: 259 QRGVVAAFKSWGLPVNPLMEITRSPDELLDYYRGIESKRAKLDYDIDGVVYKVNRLDYQE 318

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +RSPRW I+HKFA ++A+T L  IDIQ+GRTG LTPVA+LEPV +GG +++NATL
Sbjct: 319 RLGFVSRSPRWAIAHKFAAERATTVLNKIDIQVGRTGALTPVAKLEPVTVGGVVVSNATL 378

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED I             +DIR GD V+V+RAG+VIP++V++++++R   A P+ FP+ 
Sbjct: 379 HNEDEISR-----------KDIREGDTVVVQRAGDVIPQIVEVVLDKRPQHAAPYKFPAV 427

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CPIC S  VR+ + +        RCTGGL C AQ  ERLKHFVSR+AF+IEGLG ++++F
Sbjct: 428 CPICGSHAVRESDEEGNAADVVRRCTGGLVCGAQLKERLKHFVSRNAFDIEGLGGEKIEF 487

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           FF++      I+  ADIFTL++R Q S   +  + GF + SV  L+ +IN RR + L+RF
Sbjct: 488 FFET----GRIKSAADIFTLEKRDQKSDEPLTKVRGFKETSVNKLFAAINARRTVPLDRF 543

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA--HNNDDWLSLIRVPLVGDIIAQA 611
           +F+LGIRH+G   A+ LAK Y +++     ++  I     ++ +  +  +  +G+ +  A
Sbjct: 544 LFALGIRHIGETTAKDLAKAYGTFEALRAAVDAAIQGGKGSEAYQDIDNIEGIGETVVDA 603

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +++F+    N   ++ALLKEV+ +  +  + VSS +  K +VFTGTL K+ R++A+    
Sbjct: 604 LIDFFSEQHNQEQLDALLKEVNVTAFKRVQ-VSSPVTGKTVVFTGTLTKLTRNEAKAQAE 662

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +LGA VS  +S+KTD ++ G   GSKL+ A+ LGV +++E+ +L L+ +
Sbjct: 663 RLGAKVSGSVSKKTDYVVAGAEAGSKLDNARALGVIVLDEDGWLELIGK 711


>gi|126736446|ref|ZP_01752187.1| DNA ligase, NAD-dependent [Roseobacter sp. CCS2]
 gi|126713984|gb|EBA10854.1| DNA ligase, NAD-dependent [Roseobacter sp. CCS2]
          Length = 715

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 305/719 (42%), Positives = 437/719 (60%), Gaps = 16/719 (2%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           +   +P+ +LS EQA KELS L  +++  +  Y++   P I D+ YDALKRR  AI   F
Sbjct: 11  QTGDVPVASLSPEQATKELSWLATQLNAANTAYHRDDAPDISDATYDALKRRNAAIEAQF 70

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           PDL R    + P   +GG++     KV H +  LSL   ++ +D+ +F  RI ++     
Sbjct: 71  PDLKRQ---DSPSETVGGQIAEGFGKVKHVVRMLSLGNAFDDDDVHEFDQRIRKYLGLAA 127

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
           D  + +T EPKIDG  +++RYE GK + AA RGDG +GE+V+   R I  IP  ++   P
Sbjct: 128 DALLTYTAEPKIDGLSLSLRYEDGKLIQAATRGDGETGENVTNNARTIADIPAKVNGA-P 186

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
           +++EVRGEVY+S +DF ALN     VG K +ANPRNAA+G LR+L+     +R L FF +
Sbjct: 187 DVLEVRGEVYMSHDDFTALNARQAEVGGKTFANPRNAAAGSLRQLDAEITKSRPLRFFAY 246

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             G  S   A+ Q   + K++ LGF  N      +    ++++Y  +++ R+ L YDIDG
Sbjct: 247 AWGDLSARLAQTQSGAIAKLKTLGFSTNPLTEACDGPAAMIAHYKGIEAQRANLGYDIDG 306

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKVD+ +LQ++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL PV
Sbjct: 307 VVYKVDDLTLQRRLGFRSTTPRWAIAHKFPAELAWTVLEAIDIQVGRTGALSPVARLRPV 366

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG +++NATLHNEDYI G D +G  +R GRDIRVGD V V RAG+VIPKV DI +  R
Sbjct: 367 TVGGVVVSNATLHNEDYIAGRDGNGDPIREGRDIRVGDWVQVYRAGDVIPKVKDIDLARR 426

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             DA P+  P+ CP C S  +R+         A  RCTGG+ C AQ +E+LKHF+SR AF
Sbjct: 427 PKDAMPYQMPARCPECGSDAIREEG------DAVRRCTGGIICPAQAVEKLKHFISRTAF 480

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IEGLG +Q++ F+        I  PADIFTL+ R      +++N  G+GD S  NL+D+
Sbjct: 481 DIEGLGAKQVEQFYAD----GWIATPADIFTLRVRFSEGLQQLKNREGWGDKSAANLFDA 536

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I+++R ISL R I+SLGIRHVG   A  LA +Y S+  F Q +          W  L  +
Sbjct: 537 IDEKREISLARVIYSLGIRHVGENSAALLANHYTSWTAFEQAMTAAQIGEGHAWDELNNI 596

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             VG ++A +++   Q      +++ L+KE+        +   S +  K +VFTGTL+++
Sbjct: 597 DGVGAVMATSLITTMQQEAERASIDQLIKELDVQDAE-ARATDSPVAGKTVVFTGTLERM 655

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            R +A+     LGA VS  +S KTDI+I G   GSK +KA  LG++ M+E+ +L L+  
Sbjct: 656 TRAEAKARAETLGAKVSGSVSAKTDILIAGPGAGSKAKKAADLGIETMDEDAWLSLIGD 714


>gi|298293088|ref|YP_003695027.1| DNA ligase, NAD-dependent [Starkeya novella DSM 506]
 gi|296929599|gb|ADH90408.1| DNA ligase, NAD-dependent [Starkeya novella DSM 506]
          Length = 725

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 299/735 (40%), Positives = 450/735 (61%), Gaps = 32/735 (4%)

Query: 1   MKKR-QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59
           M  R   I +E L+ ++A KE + L  EI+ HD  YYQ   P + D++YDAL+RR +AI 
Sbjct: 1   MSARTPDIDVEKLTADEAAKEHARLGDEIAGHDRRYYQDDAPSVSDADYDALRRRYEAIE 60

Query: 60  HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
             FP+L      +    K+G   +    KV H +P LSL   +  E++ +F+ R+ RF  
Sbjct: 61  AQFPELKGI---DSLSEKVGAAPSSKFAKVRHRVPMLSLGNAFADEEVEEFVARVRRFLG 117

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
              D  + FT EPKIDG   ++RYE G+FV AA RGDG  GEDV+  +R I  IP  L  
Sbjct: 118 LSADAEVAFTAEPKIDGLSCSLRYENGQFVQAATRGDGFEGEDVTNNVRTIGEIPERLKG 177

Query: 180 NI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237
           N  P I EVRGEVY+   DF A+N+   A G+  +ANPRNAA+G LR+L+P    +R L 
Sbjct: 178 NDVPGIFEVRGEVYMGHADFAAINERQSASGKPLFANPRNAAAGSLRQLDPKITASRPLR 237

Query: 238 FFVHGLGKTSE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           FF +  G+ ++  + +  Q+ +++     G P N       +   ++++Y+ ++  R++L
Sbjct: 238 FFAYAWGEVADGALPSDTQFGVIEAFSRWGLPTNPLTVLCRSAQELLAHYHAIEEQRASL 297

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            YDIDG+VYKVD  +LQ++LG  +RSPRW ++HKF  ++A T+L  I+IQ+GRTG LTPV
Sbjct: 298 GYDIDGVVYKVDSLALQQRLGFVSRSPRWALAHKFPAQRAITQLERIEIQVGRTGALTPV 357

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG-----RDIRVGDRVLVKRAGEVI 410
           A+L P+ +GG +++NA+LHNEDYIKG+   G  +RG       DIR GD V+++RAG+VI
Sbjct: 358 AKLTPITVGGVVVSNASLHNEDYIKGIGGDGLPIRGTFNDEPVDIREGDWVVIQRAGDVI 417

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P+VV + +  R  DA+P+ FP+ CP C S  VR+         A  RCTGGL C AQ +E
Sbjct: 418 PQVVSVELERRPKDAKPYQFPTICPACGSHAVREDGE------AVRRCTGGLICPAQAVE 471

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ--QTSTTKIENIL 528
           R++HFVSRDAF+IEGLG++Q+  FF        ++ PADIFTL+ R     S T+++N  
Sbjct: 472 RIRHFVSRDAFDIEGLGEKQVQAFFDW----GLVKQPADIFTLEARDSAPDSLTRLKNRD 527

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN--- 585
           G+G+ S  NL+ +I  RR + + RF+++LGIRH+G   A+ L ++Y + +   +      
Sbjct: 528 GWGETSAKNLFAAIAARRKVPVNRFLYALGIRHIGETNAKRLMRHYPTIEALREAALAAE 587

Query: 586 ---NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
                    N+ W  +  +  +G ++A+A+V+F+  P N  A++ALLKEV+P        
Sbjct: 588 MPGEAYPKGNEAWAEMNAIEGIGAVVAEAVVDFFHEPNNEAALDALLKEVTPEPMEAVAG 647

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
             +    K +VFTG L+K+ R +A+    +LGA V+  +S+KTD ++ G + GSKL KA+
Sbjct: 648 GGAVAG-KTVVFTGALEKMTRDEAKAMAERLGAKVAGSVSKKTDYVVAGADAGSKLAKAR 706

Query: 703 QLGVKIMNEEQFLFL 717
           +LGV ++ E+++L L
Sbjct: 707 ELGVSVLTEDEWLEL 721


>gi|159044058|ref|YP_001532852.1| DNA ligase [Dinoroseobacter shibae DFL 12]
 gi|190359252|sp|A8LK52|DNLJ_DINSH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157911818|gb|ABV93251.1| DNA ligase [Dinoroseobacter shibae DFL 12]
          Length = 741

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 298/712 (41%), Positives = 433/712 (60%), Gaps = 15/712 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + +EALS   ARKEL+ L + ++  +  Y++   P + D++YDALK+R  AI   FPDL 
Sbjct: 40  VAVEALSEAAARKELARLSELLARANAEYHRDDAPSLSDADYDALKQRNAAIEARFPDLK 99

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R    + P +++G   + +  KVTH++  LSL   ++ ED+R F TRI RF    +D  +
Sbjct: 100 RG---DSPSDQVGAAPSDTFSKVTHAVRMLSLANAFSDEDIRDFDTRIRRFLGLAEDAPL 156

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +T EPKIDG  +++RYE G  V AA RGDG  GE+V+A  R I  IP  L    PE++E
Sbjct: 157 AYTAEPKIDGLSLSLRYEHGTLVQAATRGDGAVGENVTANARTIDDIPHRLDGA-PEVLE 215

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+S  DF  LN      G K +ANPRNAA+G LR+L+      R L FF +  G+
Sbjct: 216 VRGEVYMSHADFAELNARQAETGGKTFANPRNAAAGSLRQLDAEITRARPLKFFAYAWGE 275

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A+ Q E L + R  GF +N    +  T   +++ Y  +++ R+TL YDIDG+VYK
Sbjct: 276 ISAPLAETQTETLARFREFGFTINPLTVRCETPEDMLAQYRAIEAQRATLGYDIDGVVYK 335

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +D+  LQ++LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG
Sbjct: 336 LDDLDLQRRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLAPVTVGG 395

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYI+G D +G  +R G DIRVGD V V RAG+VIPK+ D+ ++ R   A
Sbjct: 396 VVVSNATLHNEDYIQGRDNTGAPIRWGTDIRVGDWVQVYRAGDVIPKIRDVDLSRRPEGA 455

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            PF FP+ CP C S   R+         A  RC+GGL C AQ +E+LKHFVSR A +I+G
Sbjct: 456 APFDFPTTCPECGSDAPREPG------DAVRRCSGGLICPAQAVEKLKHFVSRGALDIDG 509

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F++       I  PADIFTL+ R      +++N  G+GD S  NL+ +I+  
Sbjct: 510 LGAKQVEQFYRD----GWIAEPADIFTLRARFGQGLQQLKNREGWGDKSAENLFRAIDTA 565

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R     + +F LGIRH+G   +  LA +YL+ +     ++  +   +D W  L+ +  VG
Sbjct: 566 RTAPFAKVLFGLGIRHIGESASSLLANHYLTMEALLAAVDAAVDETSDAWADLLNIDGVG 625

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +++A+A+V          +V  LL ++ P+     +   S +  K LVFTGTL+ + R +
Sbjct: 626 EVMARALVTTLTQEAERASVNRLLAQIDPAPATPPQVGDSPVAGKTLVFTGTLETMSRAE 685

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           A+     LGA V+  +S KTD++I G   GSK  KA+ LG+++++E+ +  L
Sbjct: 686 AKATAEALGAKVAGSVSAKTDLLIAGPGAGSKATKAEALGIEVIDEDAWRVL 737


>gi|85708859|ref|ZP_01039925.1| DNA ligase [Erythrobacter sp. NAP1]
 gi|85690393|gb|EAQ30396.1| DNA ligase [Erythrobacter sp. NAP1]
          Length = 698

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 271/717 (37%), Positives = 402/717 (56%), Gaps = 33/717 (4%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+  +S   A  EL  L ++I++HD  Y+    P I D EYDAL RR   +  AFP L R
Sbjct: 13  PVSQMSEADAANELMRLAKQIAHHDRLYHADDDPEISDQEYDALVRRNRELEEAFPQLVR 72

Query: 68  SEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               + P  ++G  +  S L KVTH +  +SL+  +N E++  +  RI R+     D  +
Sbjct: 73  E---DSPSKRVGHAVAASPLSKVTHEVRMMSLDNAFNREEVEDWTARIRRYLNLDADEEV 129

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
             T E KIDG   ++RYE GK + AA RGDG  GEDV+  +  I  IP+ L   +PE+ E
Sbjct: 130 AITAEDKIDGLSCSLRYENGKLMRAATRGDGQVGEDVTPNVGYISDIPQELPDGVPEVFE 189

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+S+ DF ALN      G K +ANPRNAA+G LR+ + +    R L F+ +G G 
Sbjct: 190 VRGEVYMSRADFAALNTAQEEAGGKLFANPRNAAAGSLRQKDASVTAKRPLKFWAYGWGA 249

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S++  + Q +M++ +   GFP++  + +  +   ++++Y E+   R  L Y+IDG+VYK
Sbjct: 250 ASDVPCESQNDMMRMIESWGFPLSPFLTRTMSVDEMIAHYEEIGRQRPDLGYEIDGVVYK 309

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD    Q++LG  A++PRW ++HKF  ++A T L  IDIQ+GRTG LTPV RL PV +GG
Sbjct: 310 VDRLDWQQRLGFVAKAPRWALAHKFPAEKAQTTLEAIDIQVGRTGKLTPVGRLAPVLVGG 369

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +TN TLHN D I+ L            +R GDR++++RAG+VIP+V  +    R  + 
Sbjct: 370 VTVTNVTLHNRDEIERL-----------GVRPGDRIVIQRAGDVIPQV--VENLTRDEER 416

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +PF FP  CP C S  V +            RCTGGL C AQ+ +RL+HFVSR A +I+G
Sbjct: 417 EPFVFPDHCPECDSEAVAEEGE------VDVRCTGGLICPAQRTQRLEHFVSRKALDIDG 470

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
            G + +  FF        +  PADIF L+ R++     I  + G+ D SV NL  S+  R
Sbjct: 471 FGSKTIAQFF----ALGWLESPADIFRLKDRRE----DILALEGWQDKSVDNLLASVENR 522

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R     R +F LGIRHVG   AR L K+               A + D    L  +  +G
Sbjct: 523 REPDAARLLFGLGIRHVGEVTARDLLKHVHELPALRTIAEKARAGDEDAASELTAIDGIG 582

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             + +A+ +F+  P N+   E +L EV+P     E  + S +  K +VFTG L+ + R +
Sbjct: 583 PSVVEALGDFFHEPHNVAVWEDILSEVTPPRYEVE-TLDSPVAGKTVVFTGKLETMSRDE 641

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+    +LGA  +  +S KTD+++ G   GSKL+KA+QLG+++++E  +  ++ +  
Sbjct: 642 AKAQAERLGAKAAGSVSAKTDLLVAGPGAGSKLKKAEQLGIEVVDEAGWAEIVAKAG 698


>gi|83647417|ref|YP_435852.1| DNA ligase, NAD-dependent [Hahella chejuensis KCTC 2396]
 gi|123767368|sp|Q2SD47|DNLJ_HAHCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83635460|gb|ABC31427.1| DNA ligase, NAD-dependent [Hahella chejuensis KCTC 2396]
          Length = 683

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 250/719 (34%), Positives = 393/719 (54%), Gaps = 45/719 (6%)

Query: 12  LSI--EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +S      ++EL++L + I+ H+  YY    P I D+EYD L RR   I   FP    + 
Sbjct: 1   MSEVPAAIQEELNTLRETINDHNYRYYTLDDPSIPDAEYDRLMRRLREIEAEFPQ---TI 57

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++G         V+H +P LSL+  +  +DL  F  R+    ++ +D  I + 
Sbjct: 58  TPDSPTQRVGAAPAEGFETVSHRLPMLSLDNAFEEQDLLDFDRRVRERLKEAEDARIDYC 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            EPK+DG  I++ Y  G  V    RGDG +GED++A ++ +  IP  L     P  +EVR
Sbjct: 118 CEPKLDGIAISLLYRDGYLVRGVTRGDGSAGEDITANVKTVKNIPLKLRGEGYPAELEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+Y+ K  F A+N +  A G K + NPRNAA+G LR+L+P     R L    + +G   
Sbjct: 178 GEIYLPKAAFDAINKDAAAKGEKTFVNPRNAAAGSLRQLDPRITAKRALEMCCYSVGYFE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 Q+++L +++  G  +N+ ++ A+     + YY  + S+R  LPY+IDG+V+KV+
Sbjct: 238 GELPGTQHDILTQLQQWGLKINSQMKLASGAQECLDYYRHIMSVRDQLPYEIDGVVFKVN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ++LG  +R+PRW I+HKF   +  T LL +D Q+GRTG +TPVARL+PV +GG  
Sbjct: 298 RIDLQQELGFVSRAPRWAIAHKFPAHEEMTELLAVDFQVGRTGAVTPVARLKPVFVGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN D I+ L           D+ +GD V+++RAG+VIP+VV ++ + R  +A P
Sbjct: 358 VSNATLHNMDEIRRL-----------DVHIGDTVIIRRAGDVIPQVVSVVQDRRPENAVP 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP+C S V++          A  RC+GGL CSAQ+ E +KHF SR A +I+GLG
Sbjct: 407 VDRPEHCPVCGSDVLQLEGE------AVARCSGGLYCSAQRKEAIKHFASRKAMDIDGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++   + E     I  PA +++L+            +   G+ S  NL ++I   + 
Sbjct: 461 DRLVELLVEKE----LIDSPASLYSLKAPDVAG------LERMGEKSAQNLINAIEASKQ 510

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +  RFI++LGIR VG   A+ LA+++ +     Q               L+  P +G I
Sbjct: 511 TTFARFIYALGIREVGEATAKVLAQHFPTLDLLKQATE----------EDLVEAPDIGPI 560

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKA 666
            A  I  F+Q   N+  ++ALL +         ++  +  +  +  V TG L    R +A
Sbjct: 561 SAGHIRSFFQQEHNLETIDALLNQGVSWPEVVVRSTETLPLSGQTAVVTGVLADYSRDEA 620

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           ++ +T+LGA VS  +S KT  ++ G+  GSKL KAQ LGVK+++E+ F  LL+++   L
Sbjct: 621 KDLLTRLGAKVSGSVSAKTGFVVAGEKAGSKLTKAQDLGVKVLDEDAFKQLLEEHQAHL 679


>gi|90418183|ref|ZP_01226095.1| DNA ligase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337855|gb|EAS51506.1| DNA ligase [Aurantimonas manganoxydans SI85-9A1]
          Length = 703

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 297/714 (41%), Positives = 436/714 (61%), Gaps = 18/714 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +E L  ++A  EL  L  EI+ HD  YY+   P + D+EYD L+RR  AI   FP+L R
Sbjct: 5   AVETLDRDEAAAELERLAGEIAAHDRAYYREDAPTVTDAEYDTLRRRNAAIEARFPELIR 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
               + P  ++G E++    K+ H++P LSL+  ++ ED+  F  R+ RF +  DD  + 
Sbjct: 65  E---DSPSARVGTEVSEKFGKIRHAVPMLSLDNAFSDEDVADFAKRVRRFLKLDDDAPLA 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            T EPKIDG  +++RYEKG+ V AA RGDG +GEDV+   R I  IP  L    PE+ EV
Sbjct: 122 ITAEPKIDGLSLSLRYEKGELVSAATRGDGATGEDVTRNARTIDDIPNRLKGKAPEVFEV 181

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246
           RGEVY+S   F  LN      G+  YANPRNAA+G LR+L+      R L FF +  G+ 
Sbjct: 182 RGEVYMSHAAFTDLNARQAEEGKPVYANPRNAAAGSLRQLDAGITRARKLQFFAYAWGEA 241

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE+  + Q E++  +   GFPVN  +++  T  G++++Y+ ++  R+ L YDIDG+VYKV
Sbjct: 242 SEVPGETQTEVVAAIAGFGFPVNERMKRFETIEGLIAHYHAIEENRAGLGYDIDGVVYKV 301

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +LQK+LG  +RSPRW I+HKF  +QA+T L  I+IQ+GRTG LTPVA+L+PVN+GG 
Sbjct: 302 DDLALQKRLGFVSRSPRWAIAHKFPAEQATTVLRAIEIQVGRTGALTPVAKLDPVNVGGV 361

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++ NATLHN + I+ L           D+RVGD V ++RAG+VIP+V+ I+ ++R  DA+
Sbjct: 362 MVANATLHNAEEIERL-----------DVRVGDTVQIQRAGDVIPQVLGIVADKRPEDAE 410

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           PF+FPS CP      V      +G      RCTG  AC  Q+ E LK FVSR AF+IEGL
Sbjct: 411 PFAFPSVCPCELKTDVVREETASGAQSVVRRCTGEFACPFQRREHLKLFVSRKAFDIEGL 470

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q+D F+   DP F +R PADIF +  R Q    K+++  GFG+VS  NL+ +I  RR
Sbjct: 471 GDKQIDLFYD--DPDFQVRTPADIFRMHGRNQEGLKKLKDKEGFGEVSAKNLFAAIEARR 528

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I L+R IFSLGIRHVG   A++LA+ Y +++ F +    + A + +    +  +  +G 
Sbjct: 529 TIPLDRLIFSLGIRHVGETTAKTLARAYGTFEAFHEAALKVAAGDEEASGEMDALDDIGG 588

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  A   F+    N+  VE L+ E+            S +  + +VFTG+L+K+ R +A
Sbjct: 589 AVITATARFFSEDHNLKLVEDLVAELDVQPAEQPAAT-SPVSGQTIVFTGSLEKMTRDEA 647

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +     LGA V+  +S+KTD+++ G   GSKL+KA +LGV++++E+ +   + +
Sbjct: 648 KAMAEGLGAKVAGSVSKKTDLVVAGPGAGSKLKKAAELGVEVIDEDAWFVRIGR 701


>gi|296132371|ref|YP_003639618.1| DNA ligase, NAD-dependent [Thermincola sp. JR]
 gi|296030949|gb|ADG81717.1| DNA ligase, NAD-dependent [Thermincola potens JR]
          Length = 665

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 237/710 (33%), Positives = 373/710 (52%), Gaps = 47/710 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A K ++ L ++I  H+  YY   +P I D+EYD L R    +   +PDL     P
Sbjct: 1   MDKAAAAKRINELRKQIEEHNYYYYVLDRPRITDAEYDRLMRELTELEQQYPDLV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG        V H  P LSL   ++  DL  F  R+           + + +E
Sbjct: 58  DSPTQRVGGAPAQGFQSVRHLAPMLSLSNAFSAADLLDFDKRVRNGL---AGARVEYVVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE G+FV  A RGDG  GED++  ++ I +IP  L  +  E++EVRGE 
Sbjct: 115 LKIDGLAVSLLYENGRFVRGATRGDGEVGEDITQNLKTIKSIPLRLRQD-LELLEVRGEA 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K +F  +N+     G   +ANPRNAA+G LR+L+P     R L+ F++ LG      
Sbjct: 174 YMPKKEFARVNEAREEAGEPLFANPRNAAAGSLRQLDPAVTAERSLDIFLYALGAVQGQA 233

Query: 251 A-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             K   E L  ++ LGF +N  +      + ++ Y       R  LPY+IDG+V KV+  
Sbjct: 234 PVKTHLEGLHLLKDLGFRINPNIVLLPNINEVIDYCQNWTEKRHDLPYEIDGMVIKVNSL 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q  LG  ++SPRW I++KF  +QA T++  I +++GRTG+LTP A LEPV + G+ I+
Sbjct: 294 AQQAALGFTSKSPRWAIAYKFPAEQAVTKVKRIYVRVGRTGVLTPTAELEPVRVAGSTIS 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           +ATLHNED I+            +DIR+GD V++ +AG+VIP++++++  +R    Q F 
Sbjct: 354 SATLHNEDIIR-----------EKDIRIGDTVIIHKAGDVIPEIIEVVKEKRTGQEQEFF 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C   V +       +            C  +  E L HFVSRDA +IEGLG  
Sbjct: 403 MPAECPVCHGPVRKPAGEVAVR-------CVNKDCPGRGREGLIHFVSRDAMDIEGLGPA 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D        A  ++  AD++ L             +   G  SV NL ++I + +   
Sbjct: 456 VIDQLL----TAGLVKDAADLYYLNAEDLIK------LERMGKKSVENLLNAIERSKQKD 505

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L   IF+LGIRHVGA   + LA ++ S     +               L  +P +G  +A
Sbjct: 506 LASLIFALGIRHVGARAGKILAAHFGSMDRLKEARQ----------EELTAIPEIGPKMA 555

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++IV ++++P ++  +E L            +     +E K  V TG L+K  R +AQE 
Sbjct: 556 ESIVAYFRDPAHLRLIERLRGAGVKMTQDIPERGERPLEGKTFVLTGALEKYSRKEAQEL 615

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +LG  VS+ +S+KTD ++ G +PGSKLEKA+QLG+ +++E+ F  +++
Sbjct: 616 IEKLGGKVSSSVSKKTDYVLAGADPGSKLEKARQLGITVISEDDFERMIK 665


>gi|319899147|ref|YP_004159240.1| DNA ligase [Bartonella clarridgeiae 73]
 gi|319403111|emb|CBI76669.1| DNA ligase [Bartonella clarridgeiae 73]
          Length = 718

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 324/720 (45%), Positives = 464/720 (64%), Gaps = 16/720 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ L+  +A  EL  L +EI+ HD  YY+  +P I D+EYDAL+RR  AI + FP+L R+
Sbjct: 6   IKNLTALEAASELEWLAKEIARHDVLYYRDDQPEISDAEYDALRRRNGAIENLFPELIRA 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P  KIG  ++    K  H+ P LSL+  +N +D+ +F+ RI RF +  +   I  
Sbjct: 66  ---DSPTFKIGAPISEKFEKSVHAQPMLSLDNAFNFKDVSEFVERIRRFLRFPETQIIKM 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE GK V A  RG+G+ GE+V+   R I  IP+VL    P+IIEVR
Sbjct: 123 TAEPKIDGLSLSLRYETGKLVRAVTRGNGYIGENVTTNARTIADIPQVLQGKFPDIIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247
           GEVY+ + DF  LN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ S
Sbjct: 183 GEVYMGQKDFQLLNISQQKEGKLAFANPRNAAAGSLRQLDSRITASRNLKFFAYAWGEMS 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+  + Q EM+++++  GF +N   +       ++SYY+ ++  R +L YDIDG+VYKV+
Sbjct: 243 EMPVESQMEMMERLKEYGFIINPLTKVFEKLEDLISYYHFIEECRQSLDYDIDGIVYKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQ +LG  +RSPRW I+HKF  ++A   L  IDIQ+GRTG LTPVARL P+ +GG +
Sbjct: 303 DLVLQTRLGFVSRSPRWAIAHKFPAEKAIALLESIDIQVGRTGALTPVARLTPITVGGVV 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNA+LHNEDYIKG+    + +R GRDIRVGD V+++RAG+VIP++VD++V +R  D   
Sbjct: 363 VTNASLHNEDYIKGIGYKNEPIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRPRDTPA 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP+C S  VR+         A  RCTGGL CSAQ +ER+ HFVSR+AF+IEG G
Sbjct: 423 FVFPHLCPVCGSHAVREKGE------AVRRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++FFF ++D    I  PADIFTLQRRQ+ S  ++EN+ GFG VSV  LY++IN RR 
Sbjct: 477 RKQVEFFFHAQDETLCIHSPADIFTLQRRQENSLKRLENMEGFGVVSVRKLYNAINARRK 536

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSLIRV 601
           +SL RF+F+LGIRHVG   A+ LA+ Y +Y  F     + I      +  N+ W+ L  +
Sbjct: 537 VSLSRFLFALGIRHVGEVNAQRLARAYQNYTAFETAAMSAIMPSDKFSKGNEIWVELTNI 596

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G  + +AI++FYQ   N   + ALLKEV+P      +   S +  K +VFTGTL+ +
Sbjct: 597 EGIGSRVGEAIIDFYQEVHNRDVLLALLKEVTPFHEVPVEIDYSPLAGKIIVFTGTLEHM 656

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R +A+    +LGA  S  +S+K D ++ G   GSKL KAQQLGV++++E+ +L L+  +
Sbjct: 657 SRDEAKALAERLGAKTSNSISKKVDFLVSGFGAGSKLAKAQQLGVEVLDEKSWLKLIDGH 716


>gi|227356188|ref|ZP_03840577.1| DNA ligase [Proteus mirabilis ATCC 29906]
 gi|227163652|gb|EEI48568.1| DNA ligase [Proteus mirabilis ATCC 29906]
          Length = 675

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 404/715 (56%), Gaps = 49/715 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +  ++++  L   + +H+  Y+    P I D+EYD L  +  A+    P+L     P+ P
Sbjct: 3   QNIQQQIDELRVTLRHHEYLYHVMDAPEIPDAEYDRLMNKLKALEAEHPELI---TPDSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G     +  +V H IP LSL+  ++      F  R+      K++  I F  E K+
Sbjct: 60  TQRVGALPLTAFEQVRHEIPMLSLDNAFDETTYLAFDKRLRERL--KNNEEITFCCELKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193
           DG  +++ YE G+ V AA RGDG +GE+++  +R I  IP  L  +  P  IE+RGEV++
Sbjct: 118 DGLAVSLLYENGRLVQAATRGDGTTGENITENVRTIKAIPLRLYGDNIPARIEIRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFA 251
           ++  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G        
Sbjct: 178 TEKGFEHLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELP 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              Y  LQ+ +  G PV++ ++       ++ +Y+ +  IR  L +DIDG+V KVD+ +L
Sbjct: 238 TSHYARLQQFKKWGLPVSDAIKLCTGTKAVLDFYHHVAEIRPNLGFDIDGVVIKVDDIAL 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++KF  ++  T + D++ Q+GRTG +TPVARL+PV + G +++NA
Sbjct: 298 QEELGFVSRAPRWAIAYKFQAQEQMTVIKDVEFQVGRTGAITPVARLDPVQVAGVIVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            +R+GD V+++RAG+VIP+VV +I  +R  +AQ   FP
Sbjct: 358 TLHNADEIERL-----------GLRIGDTVVIRRAGDVIPQVVSVIEEKRPENAQEIVFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CPICQS + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + +
Sbjct: 407 TQCPICQSDIERIEGE------AVARCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKII 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D   + E     ++ PAD+F L  +  +       +   G+ S   L +++ K ++ +  
Sbjct: 461 DQLVEKE----YVKTPADLFRLDEKILSG------LERMGEKSAKKLLNALEKAKSTTFA 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFI++LGIR VG   A  L  +++S +   +           +  +L  VP VGDI+A+ 
Sbjct: 511 RFIYALGIREVGEATANGLTAHFVSLEALREA----------NIEALKAVPDVGDIVAKH 560

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +V F+Q   N   ++ L+ ++  +         +   +    K +V TG+L ++ R +A+
Sbjct: 561 VVNFFQEEHNKNVIDQLVNDIGITWPAPVVATHEAGDNPFAGKTVVLTGSLSQLTRDEAK 620

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + +  LGA VS  +S+KTD++I G+  GSKL KA +LG+ +++E++ + LL+Q  
Sbjct: 621 DRLVALGAKVSGSVSKKTDMVIAGEAAGSKLAKANELGITVIDEDEMIRLLEQSK 675


>gi|16130337|ref|NP_416906.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89109225|ref|AP_003005.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           W3110]
 gi|170019306|ref|YP_001724260.1| NAD-dependent DNA ligase LigA [Escherichia coli ATCC 8739]
 gi|170082020|ref|YP_001731340.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188495579|ref|ZP_03002849.1| DNA ligase, NAD-dependent [Escherichia coli 53638]
 gi|238901574|ref|YP_002927370.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952]
 gi|256021895|ref|ZP_05435760.1| NAD-dependent DNA ligase LigA [Escherichia sp. 4_1_40B]
 gi|300951893|ref|ZP_07165701.1| DNA ligase, NAD-dependent [Escherichia coli MS 116-1]
 gi|300957240|ref|ZP_07169472.1| DNA ligase, NAD-dependent [Escherichia coli MS 175-1]
 gi|301023745|ref|ZP_07187485.1| DNA ligase, NAD-dependent [Escherichia coli MS 196-1]
 gi|312973347|ref|ZP_07787519.1| DNA ligase, NAD-dependent [Escherichia coli 1827-70]
 gi|2506362|sp|P15042|DNLJ_ECOLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781324|sp|B1XA82|DNLJ_ECODH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781325|sp|B1IX60|DNLJ_ECOLC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149242732|pdb|2OWO|A Chain A, Last Stop On The Road To Repair: Structure Of E.Coli Dna
           Ligase Bound To Nicked Dna-Adenylate
 gi|146613|gb|AAA24070.1| DNA ligase (EC 6.5.1.2) [Escherichia coli]
 gi|1788750|gb|AAC75464.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85675396|dbj|BAA16282.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K12 substr.
           W3110]
 gi|169754234|gb|ACA76933.1| DNA ligase, NAD-dependent [Escherichia coli ATCC 8739]
 gi|169889855|gb|ACB03562.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188490778|gb|EDU65881.1| DNA ligase, NAD-dependent [Escherichia coli 53638]
 gi|238860822|gb|ACR62820.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952]
 gi|260448502|gb|ACX38924.1| DNA ligase, NAD-dependent [Escherichia coli DH1]
 gi|299880716|gb|EFI88927.1| DNA ligase, NAD-dependent [Escherichia coli MS 196-1]
 gi|300315993|gb|EFJ65777.1| DNA ligase, NAD-dependent [Escherichia coli MS 175-1]
 gi|300448878|gb|EFK12498.1| DNA ligase, NAD-dependent [Escherichia coli MS 116-1]
 gi|309702699|emb|CBJ02028.1| DNA ligase [Escherichia coli ETEC H10407]
 gi|310331942|gb|EFP99177.1| DNA ligase, NAD-dependent [Escherichia coli 1827-70]
 gi|315137042|dbj|BAJ44201.1| NAD-dependent DNA ligase LigA [Escherichia coli DH1]
 gi|315615662|gb|EFU96294.1| DNA ligase, NAD-dependent [Escherichia coli 3431]
 gi|323936436|gb|EGB32725.1| DNA ligase [Escherichia coli E1520]
 gi|323941344|gb|EGB37529.1| DNA ligase [Escherichia coli E482]
          Length = 671

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|82777805|ref|YP_404154.1| NAD-dependent DNA ligase LigA [Shigella dysenteriae Sd197]
 gi|309784866|ref|ZP_07679499.1| DNA ligase, NAD-dependent [Shigella dysenteriae 1617]
 gi|123728534|sp|Q32DE2|DNLJ_SHIDS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81241953|gb|ABB62663.1| DNA ligase [Shigella dysenteriae Sd197]
 gi|308927236|gb|EFP72710.1| DNA ligase, NAD-dependent [Shigella dysenteriae 1617]
          Length = 671

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTILAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGSEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++ +Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLVFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D++   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDSREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|323170330|gb|EFZ55983.1| DNA ligase, NAD-dependent [Escherichia coli LT-68]
          Length = 671

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +S+ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNSLEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|301022290|ref|ZP_07186186.1| DNA ligase, NAD-dependent [Escherichia coli MS 69-1]
 gi|300397609|gb|EFJ81147.1| DNA ligase, NAD-dependent [Escherichia coli MS 69-1]
          Length = 671

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|324009590|gb|EGB78809.1| DNA ligase, NAD-dependent [Escherichia coli MS 57-2]
          Length = 671

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y+E++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E          + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|157156100|ref|YP_001463741.1| NAD-dependent DNA ligase LigA [Escherichia coli E24377A]
 gi|193066723|ref|ZP_03047750.1| DNA ligase, NAD-dependent [Escherichia coli E22]
 gi|194430461|ref|ZP_03062941.1| DNA ligase, NAD-dependent [Escherichia coli B171]
 gi|209919893|ref|YP_002293977.1| NAD-dependent DNA ligase LigA [Escherichia coli SE11]
 gi|218554944|ref|YP_002387857.1| NAD-dependent DNA ligase LigA [Escherichia coli IAI1]
 gi|218696047|ref|YP_002403714.1| NAD-dependent DNA ligase LigA [Escherichia coli 55989]
 gi|256017438|ref|ZP_05431303.1| NAD-dependent DNA ligase LigA [Shigella sp. D9]
 gi|260845052|ref|YP_003222830.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O103:H2 str.
           12009]
 gi|260856513|ref|YP_003230404.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O26:H11 str.
           11368]
 gi|260869108|ref|YP_003235510.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O111:H- str.
           11128]
 gi|293446772|ref|ZP_06663194.1| DNA ligase [Escherichia coli B088]
 gi|300817349|ref|ZP_07097566.1| DNA ligase, NAD-dependent [Escherichia coli MS 107-1]
 gi|300820921|ref|ZP_07101071.1| DNA ligase, NAD-dependent [Escherichia coli MS 119-7]
 gi|300903139|ref|ZP_07121073.1| DNA ligase, NAD-dependent [Escherichia coli MS 84-1]
 gi|300921341|ref|ZP_07137704.1| DNA ligase, NAD-dependent [Escherichia coli MS 115-1]
 gi|301306250|ref|ZP_07212323.1| DNA ligase, NAD-dependent [Escherichia coli MS 124-1]
 gi|301328910|ref|ZP_07221944.1| DNA ligase, NAD-dependent [Escherichia coli MS 78-1]
 gi|307312589|ref|ZP_07592222.1| DNA ligase, NAD-dependent [Escherichia coli W]
 gi|309794543|ref|ZP_07688966.1| DNA ligase, NAD-dependent [Escherichia coli MS 145-7]
 gi|331669152|ref|ZP_08370000.1| DNA ligase, NAD-dependent [Escherichia coli TA271]
 gi|331678399|ref|ZP_08379074.1| DNA ligase, NAD-dependent [Escherichia coli H591]
 gi|332278439|ref|ZP_08390852.1| NAD-dependent DNA ligase LigA [Shigella sp. D9]
 gi|190359253|sp|A7ZPL2|DNLJ_ECO24 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781319|sp|B7LCF6|DNLJ_ECO55 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781323|sp|B7M6S1|DNLJ_ECO8A RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781327|sp|B6I4Y8|DNLJ_ECOSE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157078130|gb|ABV17838.1| DNA ligase, NAD-dependent [Escherichia coli E24377A]
 gi|192925627|gb|EDV80294.1| DNA ligase, NAD-dependent [Escherichia coli E22]
 gi|194411494|gb|EDX27836.1| DNA ligase, NAD-dependent [Escherichia coli B171]
 gi|209913152|dbj|BAG78226.1| DNA ligase [Escherichia coli SE11]
 gi|218352779|emb|CAU98567.1| DNA ligase, NAD(+)-dependent [Escherichia coli 55989]
 gi|218361712|emb|CAQ99309.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI1]
 gi|257755162|dbj|BAI26664.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O26:H11 str.
           11368]
 gi|257760199|dbj|BAI31696.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O103:H2 str.
           12009]
 gi|257765464|dbj|BAI36959.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O111:H- str.
           11128]
 gi|291323602|gb|EFE63030.1| DNA ligase [Escherichia coli B088]
 gi|300404835|gb|EFJ88373.1| DNA ligase, NAD-dependent [Escherichia coli MS 84-1]
 gi|300411729|gb|EFJ95039.1| DNA ligase, NAD-dependent [Escherichia coli MS 115-1]
 gi|300526674|gb|EFK47743.1| DNA ligase, NAD-dependent [Escherichia coli MS 119-7]
 gi|300529975|gb|EFK51037.1| DNA ligase, NAD-dependent [Escherichia coli MS 107-1]
 gi|300838493|gb|EFK66253.1| DNA ligase, NAD-dependent [Escherichia coli MS 124-1]
 gi|300844712|gb|EFK72472.1| DNA ligase, NAD-dependent [Escherichia coli MS 78-1]
 gi|306907512|gb|EFN38016.1| DNA ligase, NAD-dependent [Escherichia coli W]
 gi|308121999|gb|EFO59261.1| DNA ligase, NAD-dependent [Escherichia coli MS 145-7]
 gi|315061736|gb|ADT76063.1| DNA ligase, NAD(+)-dependent [Escherichia coli W]
 gi|315256427|gb|EFU36395.1| DNA ligase, NAD-dependent [Escherichia coli MS 85-1]
 gi|320199974|gb|EFW74563.1| DNA ligase [Escherichia coli EC4100B]
 gi|323156318|gb|EFZ42476.1| DNA ligase, NAD-dependent [Escherichia coli EPECa14]
 gi|323159458|gb|EFZ45441.1| DNA ligase, NAD-dependent [Escherichia coli E128010]
 gi|323177463|gb|EFZ63051.1| DNA ligase, NAD-dependent [Escherichia coli 1180]
 gi|323184284|gb|EFZ69660.1| DNA ligase, NAD-dependent [Escherichia coli 1357]
 gi|323377683|gb|ADX49951.1| DNA ligase, NAD-dependent [Escherichia coli KO11]
 gi|323944634|gb|EGB40701.1| DNA ligase [Escherichia coli H120]
 gi|324020175|gb|EGB89394.1| DNA ligase, NAD-dependent [Escherichia coli MS 117-3]
 gi|324118125|gb|EGC12023.1| DNA ligase [Escherichia coli E1167]
 gi|331064346|gb|EGI36257.1| DNA ligase, NAD-dependent [Escherichia coli TA271]
 gi|331074859|gb|EGI46179.1| DNA ligase, NAD-dependent [Escherichia coli H591]
 gi|332100791|gb|EGJ04137.1| NAD-dependent DNA ligase LigA [Shigella sp. D9]
          Length = 671

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|301648064|ref|ZP_07247828.1| DNA ligase, NAD-dependent [Escherichia coli MS 146-1]
 gi|307139053|ref|ZP_07498409.1| NAD-dependent DNA ligase LigA [Escherichia coli H736]
 gi|331643032|ref|ZP_08344167.1| DNA ligase, NAD-dependent [Escherichia coli H736]
 gi|301073835|gb|EFK88641.1| DNA ligase, NAD-dependent [Escherichia coli MS 146-1]
 gi|331039830|gb|EGI12050.1| DNA ligase, NAD-dependent [Escherichia coli H736]
          Length = 671

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K ++NPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFSNPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|293415682|ref|ZP_06658325.1| DNA ligase [Escherichia coli B185]
 gi|291433330|gb|EFF06309.1| DNA ligase [Escherichia coli B185]
          Length = 671

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|300923365|ref|ZP_07139409.1| DNA ligase, NAD-dependent [Escherichia coli MS 182-1]
 gi|300420362|gb|EFK03673.1| DNA ligase, NAD-dependent [Escherichia coli MS 182-1]
          Length = 671

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKGFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|331673883|ref|ZP_08374646.1| DNA ligase, NAD-dependent [Escherichia coli TA280]
 gi|331069156|gb|EGI40548.1| DNA ligase, NAD-dependent [Escherichia coli TA280]
          Length = 671

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPTPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|157161876|ref|YP_001459194.1| NAD-dependent DNA ligase LigA [Escherichia coli HS]
 gi|253772690|ref|YP_003035521.1| NAD-dependent DNA ligase LigA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162394|ref|YP_003045502.1| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606]
 gi|297517308|ref|ZP_06935694.1| NAD-dependent DNA ligase LigA [Escherichia coli OP50]
 gi|300928569|ref|ZP_07144093.1| DNA ligase, NAD-dependent [Escherichia coli MS 187-1]
 gi|190359254|sp|A8A2Q7|DNLJ_ECOHS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157067556|gb|ABV06811.1| DNA ligase, NAD-dependent [Escherichia coli HS]
 gi|242378018|emb|CAQ32789.1| DNA ligase [Escherichia coli BL21(DE3)]
 gi|253323734|gb|ACT28336.1| DNA ligase, NAD-dependent [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974295|gb|ACT39966.1| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606]
 gi|253978462|gb|ACT44132.1| NAD-dependent DNA ligase LigA [Escherichia coli BL21(DE3)]
 gi|300463441|gb|EFK26934.1| DNA ligase, NAD-dependent [Escherichia coli MS 187-1]
 gi|323961212|gb|EGB56824.1| DNA ligase [Escherichia coli H489]
 gi|323970900|gb|EGB66151.1| DNA ligase [Escherichia coli TA007]
 gi|332344237|gb|AEE57571.1| DNA ligase, NAD-dependent LigA [Escherichia coli UMNK88]
          Length = 671

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|218700877|ref|YP_002408506.1| NAD-dependent DNA ligase LigA [Escherichia coli IAI39]
 gi|254781321|sp|B7NPU7|DNLJ_ECO7I RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218370863|emb|CAR18680.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI39]
          Length = 671

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V K++  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKINSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|146615|gb|AAA24071.1| lig peptide [Escherichia coli]
          Length = 671

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G        ++ H +P LSL+ +++ E    F  R+      K++  + +  E K
Sbjct: 58  PTQRVGAAPLARFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|215487666|ref|YP_002330097.1| NAD-dependent DNA ligase LigA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312967700|ref|ZP_07781915.1| DNA ligase, NAD-dependent [Escherichia coli 2362-75]
 gi|254781317|sp|B7UGB2|DNLJ_ECO27 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|215265738|emb|CAS10145.1| DNA ligase, NAD(+)-dependent [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312287897|gb|EFR15802.1| DNA ligase, NAD-dependent [Escherichia coli 2362-75]
          Length = 671

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 391/711 (54%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L  L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLIELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y+E++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------VKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E          + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|218690549|ref|YP_002398761.1| NAD-dependent DNA ligase LigA [Escherichia coli ED1a]
 gi|254781322|sp|B7MY64|DNLJ_ECO81 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218428113|emb|CAR09030.2| DNA ligase, NAD(+)-dependent [Escherichia coli ED1a]
          Length = 671

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y+E++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGLKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E          + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|293410811|ref|ZP_06654387.1| DNA ligase [Escherichia coli B354]
 gi|291471279|gb|EFF13763.1| DNA ligase [Escherichia coli B354]
          Length = 671

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|325496534|gb|EGC94393.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ECD227]
          Length = 671

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRSGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|320185101|gb|EFW59881.1| DNA ligase [Shigella flexneri CDC 796-83]
          Length = 671

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++IVG+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIVGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|238756322|ref|ZP_04617636.1| DNA ligase [Yersinia ruckeri ATCC 29473]
 gi|238705475|gb|EEP97878.1| DNA ligase [Yersinia ruckeri ATCC 29473]
          Length = 674

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 243/715 (33%), Positives = 400/715 (55%), Gaps = 47/715 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L      +    P+L  +   + 
Sbjct: 1   MESIIQQINQLRASLRHHEHQYHVLDAPEIPDAEYDRLMGELRELEAQHPELITA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +   V H +P LSL+ +++ E    F  R++     K    + F  E K
Sbjct: 58  PTQRVGAAPLDAFEPVRHEVPMLSLDNVFDEESYLAFDKRVHDRL--KTAEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G+ + AA RGDG +GE+++A +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELIRAATRGDGTTGENITANVRTIHAIPLRLQGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  LND+    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNDDARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLVDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +E LQ+ +  G PV+  V++      ++++Y++++  R+ L +DIDG+V KVD   
Sbjct: 236 PSSHFERLQQFKAWGLPVSERVQRCTGVDQVIAFYHQVEQDRAHLGFDIDGVVIKVDALD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQMTQVREVEFQVGRTGAITPVARLEPVLVAGVMVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP++V ++++ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVMVRRAGDVIPQIVGVVIDERPADAREIIF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R          A  RC+GGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PEHCPVCGSDIERIEGE------AVARCSGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + E     +  PAD+F L      S   +  +   G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKE----YVHNPADLFNL------SAGILTGLDRMGPKSAQNLVAALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA ++ + +N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAAHLAAHFRTLENLRAA----------DVEALKAVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   ++ L + +S    +      + S    K +V TG+L  + R +A++
Sbjct: 559 HVLNFLSEEHNQQVIQQLEQVISWPEPQLIIATEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +  +
Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIQVIDEAEMIRLLGESES 673


>gi|15832537|ref|NP_311310.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. Sakai]
 gi|168768500|ref|ZP_02793507.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486]
 gi|168778374|ref|ZP_02803381.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076]
 gi|208813694|ref|ZP_03255023.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045]
 gi|208821178|ref|ZP_03261498.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042]
 gi|209399429|ref|YP_002271890.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4115]
 gi|217326968|ref|ZP_03443051.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588]
 gi|254794365|ref|YP_003079202.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223146|ref|ZP_05937427.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259301|ref|ZP_05951834.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283640|ref|YP_003500458.1| DNA ligase [Escherichia coli O55:H7 str. CB9615]
 gi|166215595|sp|Q8XBL5|DNLJ_ECO57 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781320|sp|B5YZV8|DNLJ_ECO5E RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|13362753|dbj|BAB36706.1| DNA ligase [Escherichia coli O157:H7 str. Sakai]
 gi|189003243|gb|EDU72229.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076]
 gi|189362250|gb|EDU80669.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486]
 gi|208734971|gb|EDZ83658.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045]
 gi|208741301|gb|EDZ88983.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042]
 gi|209160829|gb|ACI38262.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4115]
 gi|209764248|gb|ACI80436.1| DNA ligase [Escherichia coli]
 gi|209764250|gb|ACI80437.1| DNA ligase [Escherichia coli]
 gi|209764252|gb|ACI80438.1| DNA ligase [Escherichia coli]
 gi|209764256|gb|ACI80440.1| DNA ligase [Escherichia coli]
 gi|217319335|gb|EEC27760.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588]
 gi|254593765|gb|ACT73126.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
           TW14359]
 gi|290763513|gb|ADD57474.1| DNA ligase [Escherichia coli O55:H7 str. CB9615]
 gi|320188751|gb|EFW63410.1| DNA ligase [Escherichia coli O157:H7 str. EC1212]
 gi|320640925|gb|EFX10409.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. G5101]
 gi|320646206|gb|EFX15133.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str.
           493-89]
 gi|320651712|gb|EFX20092.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str. H
           2687]
 gi|320657097|gb|EFX24906.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320662857|gb|EFX30185.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667743|gb|EFX34654.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326340214|gb|EGD64018.1| DNA ligase [Escherichia coli O157:H7 str. 1125]
 gi|326344216|gb|EGD67977.1| DNA ligase [Escherichia coli O157:H7 str. 1044]
          Length = 671

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P++CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTYCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|197285679|ref|YP_002151551.1| NAD-dependent DNA ligase LigA [Proteus mirabilis HI4320]
 gi|254781393|sp|B4EZR2|DNLJ_PROMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194683166|emb|CAR43788.1| DNA ligase [Proteus mirabilis HI4320]
          Length = 675

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 403/715 (56%), Gaps = 49/715 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +  ++++  L   + +H+  Y+    P I D+EYD L  +  A+    P+L     P+ P
Sbjct: 3   QNIQQQIDELRVTLRHHEYLYHVMDAPEIPDAEYDRLMNKLKALEAEHPELI---TPDSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G     +  +V H IP LSL+  ++      F  R+      K++  I F  E K+
Sbjct: 60  TQRVGALPLTAFEQVRHEIPMLSLDNAFDETTYLAFDKRLRERL--KNNEEITFCCELKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193
           DG  +++ YE G+ V AA RGDG +GE+++  +R I  IP  L  +  P  IE+RGEV++
Sbjct: 118 DGLAVSLLYENGRLVQAATRGDGTTGENITENVRTIKAIPLRLYGDNIPARIEIRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFA 251
           ++  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G        
Sbjct: 178 TEKGFEHLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELP 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              Y  LQ+ +  G PV++ ++       ++ +Y+ +  IR  L +DIDG+V KVD+ +L
Sbjct: 238 TSHYARLQQFKKWGLPVSDAIKLCTGTKAVLDFYHHVAEIRPNLGFDIDGVVIKVDDIAL 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++KF  ++  T + D++ Q+GRTG +TPVARL+PV + G +++NA
Sbjct: 298 QEELGFVSRAPRWAIAYKFQAQEQMTVIKDVEFQVGRTGAITPVARLDPVQVAGVIVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            +R+GD V+++RAG+VIP+VV +I  +R  +AQ   FP
Sbjct: 358 TLHNADEIERL-----------GLRIGDTVVIRRAGDVIPQVVSVIEEKRPENAQEIVFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CPICQS + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + +
Sbjct: 407 TQCPICQSDIERIEGE------AVARCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKII 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D   + E     ++ PAD+F L  +  +       +   G+ S   L +++ K ++ +  
Sbjct: 461 DQLVEKE----YVKTPADLFRLDEKILSG------LERMGEKSAKKLLNALEKAKSTTFA 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFI++LGIR VG   A  L  +++S +   +           +  +L  VP VGDI+A+ 
Sbjct: 511 RFIYALGIREVGEATANGLTAHFVSLEALREA----------NIEALKAVPDVGDIVAKH 560

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +V F+Q   N   ++ L+ ++  +         +   +    K +V TG+L ++ R +A+
Sbjct: 561 VVNFFQEEHNKNVIDQLVNDIGITWPAPVVATHEAGDNPFAGKTVVLTGSLSQLTRDEAK 620

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + +  LGA VS  +S+KTD++I G+  GSKL KA +LG+ +++E++ + LL Q  
Sbjct: 621 DRLVALGAKVSGSVSKKTDMVIAGEAAGSKLAKANELGITVIDEDEMIRLLDQSK 675


>gi|320196260|gb|EFW70884.1| DNA ligase [Escherichia coli WV_060327]
          Length = 671

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------VKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E          + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|170767420|ref|ZP_02901873.1| DNA ligase, NAD-dependent [Escherichia albertii TW07627]
 gi|170123754|gb|EDS92685.1| DNA ligase, NAD-dependent [Escherichia albertii TW07627]
          Length = 671

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQKLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y +++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLMQFKEWGLPVSDRVTLCESAEEVLAFYRKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEELGFVARAPRWAVAFKFPAQEQMTYVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATATGLAAYFGTLETLEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLIELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|281179485|dbj|BAI55815.1| DNA ligase [Escherichia coli SE15]
          Length = 671

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E          + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|323967844|gb|EGB63256.1| DNA ligase [Escherichia coli M863]
 gi|327252066|gb|EGE63738.1| DNA ligase, NAD-dependent [Escherichia coli STEC_7v]
          Length = 671

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|91211748|ref|YP_541734.1| NAD-dependent DNA ligase LigA [Escherichia coli UTI89]
 gi|117624619|ref|YP_853532.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O1]
 gi|218559359|ref|YP_002392272.1| NAD-dependent DNA ligase LigA [Escherichia coli S88]
 gi|237704934|ref|ZP_04535415.1| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA]
 gi|331658566|ref|ZP_08359510.1| DNA ligase, NAD-dependent [Escherichia coli TA206]
 gi|123084405|sp|Q1R8W1|DNLJ_ECOUT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215402|sp|A1ADS8|DNLJ_ECOK1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781318|sp|B7MHR5|DNLJ_ECO45 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91073322|gb|ABE08203.1| DNA ligase [Escherichia coli UTI89]
 gi|115513743|gb|ABJ01818.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O1]
 gi|218366128|emb|CAR03873.1| DNA ligase, NAD(+)-dependent [Escherichia coli S88]
 gi|226901300|gb|EEH87559.1| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA]
 gi|294491726|gb|ADE90482.1| DNA ligase, NAD-dependent [Escherichia coli IHE3034]
 gi|307626016|gb|ADN70320.1| NAD-dependent DNA ligase LigA [Escherichia coli UM146]
 gi|315288164|gb|EFU47564.1| DNA ligase, NAD-dependent [Escherichia coli MS 110-3]
 gi|323949546|gb|EGB45434.1| DNA ligase [Escherichia coli H252]
 gi|323955668|gb|EGB51426.1| DNA ligase [Escherichia coli H263]
 gi|331054231|gb|EGI26258.1| DNA ligase, NAD-dependent [Escherichia coli TA206]
          Length = 671

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LG+R VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGVREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E          + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|209764254|gb|ACI80439.1| DNA ligase [Escherichia coli]
          Length = 671

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P++CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTYCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IEQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|332089820|gb|EGI94921.1| DNA ligase, NAD-dependent [Shigella dysenteriae 155-74]
          Length = 671

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P+    R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPSITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVKGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWSAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|332088205|gb|EGI93327.1| DNA ligase, NAD-dependent [Shigella boydii 5216-82]
          Length = 671

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +S+ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLKRMGPKSAQNVVNSLEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWSAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|154245706|ref|YP_001416664.1| DNA ligase, NAD-dependent [Xanthobacter autotrophicus Py2]
 gi|254782313|sp|A7IG64|DNLJ_XANP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|154159791|gb|ABS67007.1| DNA ligase, NAD-dependent [Xanthobacter autotrophicus Py2]
          Length = 720

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 302/722 (41%), Positives = 457/722 (63%), Gaps = 27/722 (3%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           + IP++ LS  +A  E  +L QEI+ HD  YY+   P++ D+EYDAL+ R +AI   FP 
Sbjct: 17  RAIPVDDLSPAEAASEHKALAQEITGHDAAYYREDAPVVSDAEYDALRHRYEAIEERFPG 76

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L      +    K+G   +    KV H +P LSL   ++ E++ +F+ R+ RF     D+
Sbjct: 77  L---RGEDSLSEKVGAAPSEKFGKVAHKVPMLSLANCFSDEEVVEFVARVKRFLNLGPDD 133

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPE 183
            + FT EPKIDG   ++ YE G+   AA RGDG  GEDV+  +R I  IP  L+   +P+
Sbjct: 134 EVAFTCEPKIDGLSCSLHYENGRLTVAATRGDGSQGEDVTQNVRTIADIPERLAGKGVPQ 193

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            I+VRGEVY++K DF ALN    A   K +ANPRNAA+G LR+L+ +   +R L FF + 
Sbjct: 194 TIDVRGEVYMAKADFEALNARQAAAEEKVFANPRNAAAGSLRQLDSSITASRPLKFFAYA 253

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G+ S++ A+ Q+ +++     GF  N  +  A    G++++Y  +++ R+ L YDIDG+
Sbjct: 254 WGEASDLPAETQFGVVEAFARWGFTTNPLMVVAKDAAGLIAHYRSIEAQRALLGYDIDGV 313

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYKV+   LQ++LG  +RSPRW I+HKF  +QA+T L DI+IQ+GRTG LTPVA+L PV 
Sbjct: 314 VYKVNSLELQRRLGFVSRSPRWAIAHKFPAEQATTVLEDIEIQVGRTGALTPVAKLTPVT 373

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG ++++ATLHNED I             +D+R+GD V+V+RAG+VIP+VV +I  +R 
Sbjct: 374 VGGVVVSSATLHNEDEIAR-----------KDVRIGDTVVVQRAGDVIPQVVRVIEEKRP 422

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             ++P+ FP+ CP C S  VR+++ K+GK+ A  RCTGGL C AQ +ERL+HFVSR+AF+
Sbjct: 423 AGSKPYEFPTHCPACGSHAVREVDTKSGKVDAVRRCTGGLICPAQMVERLRHFVSRNAFD 482

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGLG++Q+  F++       I  PADIFTL+ R   S  ++EN  G+G  S  NL+ +I
Sbjct: 483 IEGLGEKQVRAFYEW----GLIASPADIFTLETRNARSLQRLENRDGWGKTSAANLFAAI 538

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN------NIIAHNNDDWL 596
            +RR ++++RF+F+LGIRHVG   A+ L ++Y + +                   N+ W 
Sbjct: 539 AERRTVAVDRFVFALGIRHVGETNAKRLMRHYGTVEALEAGALAAVIPGEEHPKGNEAWQ 598

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            +I +  +GD++A+A++EF+  PRN   V ALLKEV+P     +   +S +  K +VFTG
Sbjct: 599 EMIGIDGIGDVVAEAVIEFFGEPRNREVVTALLKEVTPEP-MEQVAAASPVSGKTVVFTG 657

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+K+ R +A+    +LGA V+  +S KT++++ G   GSKLEKAQ LGV+++ E+++  
Sbjct: 658 SLEKMTRDEAKAMAERLGAKVAGSVSAKTNLVVAGPGAGSKLEKAQALGVQVITEDEWFE 717

Query: 717 LL 718
           L+
Sbjct: 718 LV 719


>gi|319405996|emb|CBI79627.1| DNA ligase [Bartonella sp. AR 15-3]
          Length = 718

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 326/720 (45%), Positives = 465/720 (64%), Gaps = 16/720 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ L+  +A  EL  L +EI+ HD  Y++  +P I D+EYDAL+RR + I   FP+L R 
Sbjct: 6   IKNLTALEAEGELEWLAKEIARHDVLYHRDDQPEISDAEYDALRRRNEEIEALFPELVRV 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P +KIG  ++    K  H+ P LSL+  +N +D+ +FI RI RF +  +   I  
Sbjct: 66  ---DSPSSKIGAPISEKFEKSIHAQPMLSLDNAFNFKDVSEFIERIRRFLRFPETQIIEM 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE GK V A  RG+G+ GE+V+   R I  IP++L    P+IIEVR
Sbjct: 123 TAEPKIDGLSLSLRYEAGKLVCAITRGNGYIGENVTTNARTIADIPQILQGKFPDIIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247
           GEVY+ + DF  LN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ S
Sbjct: 183 GEVYMGQKDFQLLNISQQKEGKLAFANPRNAAAGSLRQLDSQITASRNLKFFAYAWGEVS 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ A+ Q EM++K++  GF +N   +       ++SYY+ ++  R +L YDIDG+VYKV+
Sbjct: 243 EMPAESQIEMMEKLKEYGFIINPLTKVFEKVEDLISYYHSIEKCRQSLNYDIDGIVYKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQ +LG  +RSPRW I+HKF  ++A   L DIDIQ+GRTG LTPVARL P+ +GG +
Sbjct: 303 DLMLQTRLGFVSRSPRWAIAHKFPAEKAIALLEDIDIQVGRTGALTPVARLTPITVGGVV 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNA+LHNEDYIKG+   G+++R GRDIRVGD V+++RAG+VIP++VD++V +R      
Sbjct: 363 VTNASLHNEDYIKGIGHKGELIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRPKGTPT 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP+C S  VR+         A  RCTGGL CSAQ +ER+ HFVSR+AF+IEG G
Sbjct: 423 FIFPRVCPVCGSHAVREEGE------AIRRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++FFF  +D    I  PADIFTLQRRQ+ S  ++EN+ GFG VSV  LY++IN RR 
Sbjct: 477 RKQVEFFFHIQDKTLCIHSPADIFTLQRRQENSLRRLENMEGFGVVSVRKLYNAINARRK 536

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSLIRV 601
           ISL RF+F+LGIRH+G   A+ LA+ Y +Y  F     + I         N+ W+ L  +
Sbjct: 537 ISLSRFLFALGIRHIGEVNAQRLARAYQNYAAFETAAMSAIMPSGKNIEGNEIWMELTNI 596

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G  + +AI++FYQ   N   + ALLKEV+P          S +  K +VFTGTLQ +
Sbjct: 597 EGIGSRVGEAIIDFYQEVHNRNVLLALLKEVTPLHEMPVAIDYSPVVGKTIVFTGTLQHM 656

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R +A+    +LGA  S  +S+KTD+++ G   GSKL KAQQLG+++++E+ +L L+  +
Sbjct: 657 SRDEAKSLAERLGAKTSNSISKKTDLLVAGSGAGSKLIKAQQLGIEVLDEKSWLKLIDGH 716


>gi|323188282|gb|EFZ73575.1| DNA ligase, NAD-dependent [Escherichia coli RN587/1]
          Length = 671

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 391/711 (54%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L  L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLIELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E          + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|283786048|ref|YP_003365913.1| DNA ligase [Citrobacter rodentium ICC168]
 gi|282949502|emb|CBG89116.1| DNA ligase [Citrobacter rodentium ICC168]
          Length = 671

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 247/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     S  ++ H +P LSL+ +++ E    F  R+      K  + + +  E K
Sbjct: 58  PTQRVGAAPLTSFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSSDKLTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED++A +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVRAATRGDGTTGEDITANVRTIRAIPLRLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV+N V   ++   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLMQFKAWGLPVSNRVTLCDSPEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGYVARAPRWAVAFKFPAQEQMTSVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPAETRPVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PAQCPVCGSDVERVEGE------AVTRCTGGLICAAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ D++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVDALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA ++ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAFFGTLEALEAA----------SIEELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +    + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIRQLLAEGVHWPAPVAIKAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|331653837|ref|ZP_08354838.1| DNA ligase, NAD-dependent [Escherichia coli M718]
 gi|331048686|gb|EGI20762.1| DNA ligase, NAD-dependent [Escherichia coli M718]
          Length = 671

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKSKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVYNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLL 669


>gi|74312947|ref|YP_311366.1| NAD-dependent DNA ligase LigA [Shigella sonnei Ss046]
 gi|123732314|sp|Q3YZD1|DNLJ_SHISS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|73856424|gb|AAZ89131.1| DNA ligase [Shigella sonnei Ss046]
 gi|323169148|gb|EFZ54825.1| DNA ligase, NAD-dependent [Shigella sonnei 53G]
          Length = 671

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEVLEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|260462100|ref|ZP_05810344.1| DNA ligase, NAD-dependent [Mesorhizobium opportunistum WSM2075]
 gi|259031960|gb|EEW33227.1| DNA ligase, NAD-dependent [Mesorhizobium opportunistum WSM2075]
          Length = 734

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 300/737 (40%), Positives = 441/737 (59%), Gaps = 32/737 (4%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+++LS  +A  EL  L +EI+ HD  Y+    P I D+EYDAL+RR  AI   FP L R
Sbjct: 5   PVDSLSESEAEAELQRLAEEIAEHDRRYHTEDAPTITDAEYDALRRRNLAIEERFPGLVR 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
               + P  ++G        KV H++P LSL K +  ED+  FI R  RF+ +  D  I 
Sbjct: 65  E---DSPSLRVGAAPAEGFAKVRHAVPMLSLAKAYTDEDVTDFIERGRRFFDRDKDLDIA 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           FT EPKIDG   ++RYEKG FV  A RG+G  GED++A +R I  IP  L  +  PEIIE
Sbjct: 122 FTAEPKIDGLSASLRYEKGVFVQGATRGNGTVGEDITANLRTIADIPAKLKGSGWPEIIE 181

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           +RGEVY++  +F AL     A G + Y NPRN A+G LR+ + +   +R L FF +  G 
Sbjct: 182 IRGEVYMTYAEFEALKARSAAAGGQDYVNPRNTAAGSLRQKDASVTASRNLKFFAYAWGY 241

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           T+E  A  QY  +QK    GF ++  + +A +   +V++Y+ ++  RS+L YDIDG+VYK
Sbjct: 242 TTEDPAPTQYGAVQKFADWGFKISPLMVRAKSVEELVAHYHRIEEQRSSLGYDIDGVVYK 301

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+  LQ++ G     PRW I+HKF  +QA T +  IDIQ+GRTG L PVARL PV +GG
Sbjct: 302 VDQLELQRRWGFVTGEPRWAIAHKFPAEQAMTTVQKIDIQVGRTGTLAPVARLAPVTVGG 361

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ N TLHNEDYIKG D++G+ +R G D+R+GD V+++RAG+VIP++V +++++R  DA
Sbjct: 362 VVVENVTLHNEDYIKGFDSNGQPIRDGIDVRIGDTVVIQRAGDVIPQIVSVVIDKRPADA 421

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P+ FP  CP+C S   R++N KTGK  +  RCTG L C+AQ +ERL+HFVSR A +IEG
Sbjct: 422 TPYEFPHTCPVCGSPATREINEKTGKEDSRRRCTGELICAAQAVERLRHFVSRGALDIEG 481

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ----------------------TSTTK 523
           LG + +D FF     A  I+  ADIFTL+ R+                        +   
Sbjct: 482 LGAENIDTFFN----AGLIKTAADIFTLRDRRPAVTKALAERREEQARQREAASGKTRKN 537

Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
           + ++       +  L+ +I+ RR   L+RFIF+LGIRH+G   A  LA+ + + +   + 
Sbjct: 538 VRSVEDRNYEGLDKLFAAIDSRREPELDRFIFALGIRHIGETTAALLARTFSTIEELIR- 596

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
           +    A   D       +  +GD +  A+ +F+ N RN   +E LL++V P       + 
Sbjct: 597 VGKETAAAEDPHTVFPSINGIGDTVIDALRDFFGNQRNDDVLEKLLEQVKPKPYIVTVSA 656

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
            SE+  K +VFTGTL+K+ R +A+    +LGA V+  +S KTD+++ G   GSKL+ A +
Sbjct: 657 DSEVAGKTIVFTGTLEKMTRSEAKAMAERLGAKVAGSVSAKTDLLVAGPGAGSKLKLASE 716

Query: 704 LGVKIMNEEQFLFLLQQ 720
           LGV++++E+ +L  + +
Sbjct: 717 LGVEVIDEDTWLQRVGK 733


>gi|331648073|ref|ZP_08349163.1| DNA ligase, NAD-dependent [Escherichia coli M605]
 gi|331042933|gb|EGI15073.1| DNA ligase, NAD-dependent [Escherichia coli M605]
          Length = 671

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E          + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIIINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|26248787|ref|NP_754827.1| NAD-dependent DNA ligase LigA [Escherichia coli CFT073]
 gi|170680446|ref|YP_001744602.1| NAD-dependent DNA ligase LigA [Escherichia coli SMS-3-5]
 gi|227887457|ref|ZP_04005262.1| NAD-dependent DNA ligase LigA [Escherichia coli 83972]
 gi|300981618|ref|ZP_07175608.1| DNA ligase, NAD-dependent [Escherichia coli MS 45-1]
 gi|301046300|ref|ZP_07193464.1| DNA ligase, NAD-dependent [Escherichia coli MS 185-1]
 gi|81475373|sp|Q8FFC1|DNLJ_ECOL6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781328|sp|B1LMK5|DNLJ_ECOSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|26109193|gb|AAN81395.1|AE016764_77 DNA ligase [Escherichia coli CFT073]
 gi|170518164|gb|ACB16342.1| DNA ligase, NAD-dependent [Escherichia coli SMS-3-5]
 gi|227835807|gb|EEJ46273.1| NAD-dependent DNA ligase LigA [Escherichia coli 83972]
 gi|300301715|gb|EFJ58100.1| DNA ligase, NAD-dependent [Escherichia coli MS 185-1]
 gi|300408962|gb|EFJ92500.1| DNA ligase, NAD-dependent [Escherichia coli MS 45-1]
 gi|307554453|gb|ADN47228.1| DNA ligase [Escherichia coli ABU 83972]
 gi|315293473|gb|EFU52825.1| DNA ligase, NAD-dependent [Escherichia coli MS 153-1]
 gi|323977408|gb|EGB72494.1| DNA ligase [Escherichia coli TW10509]
          Length = 671

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E          + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|163747147|ref|ZP_02154503.1| DNA ligase, NAD-dependent [Oceanibulbus indolifex HEL-45]
 gi|161379708|gb|EDQ04121.1| DNA ligase, NAD-dependent [Oceanibulbus indolifex HEL-45]
          Length = 685

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 290/686 (42%), Positives = 419/686 (61%), Gaps = 15/686 (2%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           Y+    P I D+EYDALKRR  AI   +PDL R    + P  ++G  +     KV H++ 
Sbjct: 12  YHTEDAPEISDAEYDALKRRNAAIEARYPDLKRD---DSPTEQVGAPVAEGFGKVRHAVS 68

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL   ++ E++  F  RI ++   + D  + +T EPKIDG  +++RYE G  V AA R
Sbjct: 69  MLSLANAFDAEEVTDFDARIRKYLGVEADAPLAYTAEPKIDGLSLSLRYENGLLVQAATR 128

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GE+V+A  R I  IP  +    P+++EVRGEVY+S  DF ALN+     G K +A
Sbjct: 129 GDGAVGENVTANARTIQDIPHQIDEA-PDLLEVRGEVYMSHADFAALNERQAERGGKTFA 187

Query: 215 NPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G LR+L+      R L FF +  G  S   A+ Q   + ++  LGF  N    
Sbjct: 188 NPRNAAAGSLRQLDAEITRARPLRFFAYAWGALSAPLAETQKGAIDRLAKLGFVTNPLTA 247

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
             +    +V++Y ++++ R+TL YDIDG+VYKVD+ +LQ++LG R+ +PRW I+HKFA +
Sbjct: 248 LCDGPSDMVAHYAKIEAQRATLGYDIDGVVYKVDDLALQERLGFRSTTPRWAIAHKFAAE 307

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
            A TRL  IDIQ+GRTG L+PVARL+PV +GG +++NATLHNEDYIKGLD+ G  +RGG+
Sbjct: 308 LAWTRLEGIDIQVGRTGALSPVARLQPVTVGGVVVSNATLHNEDYIKGLDSKGAEIRGGK 367

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIRVGD V + RAG+VIPKV D+ +++R  DA PF FPS CP C S  +R+         
Sbjct: 368 DIRVGDWVQIYRAGDVIPKVADVDLSKRPKDAAPFVFPSVCPECGSDAIREPG------D 421

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
           A  RCTGGL C AQ +E+LKHFV+R AF+I+GLG +Q++ F+        I  PADIFTL
Sbjct: 422 AVRRCTGGLICPAQAVEKLKHFVARGAFDIDGLGAKQVEQFYHD----GWIAEPADIFTL 477

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
           + R      +++N  G+G  S  NL+ +I  +R I + R IF+LGIRHVG   +  +A +
Sbjct: 478 KERFGNGVQQLKNREGWGPKSADNLFQAIKDKRKIPMSRLIFALGIRHVGDAASNLIALH 537

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           Y  + +F   +          W  LI V  VG ++A ++V  +       +++ L+  ++
Sbjct: 538 YGDWDSFETAMAEARGLEGPAWDDLIAVDGVGSVMAGSLVSAFAQEAERASIDRLVAHLT 597

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                      S +  K +VFTGTL+K+ R +A+    +LGA VS  +S KTDI++ G  
Sbjct: 598 VVPTERPDTEGSPVAGKTVVFTGTLEKMSRAEAKARAERLGAKVSGSVSAKTDILVAGPG 657

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GSK +KA  LG++ ++E+ +L L++
Sbjct: 658 AGSKAKKAADLGIETLDEDGWLALIE 683


>gi|261340751|ref|ZP_05968609.1| DNA ligase, NAD-dependent [Enterobacter cancerogenus ATCC 35316]
 gi|288317173|gb|EFC56111.1| DNA ligase, NAD-dependent [Enterobacter cancerogenus ATCC 35316]
          Length = 671

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 246/713 (34%), Positives = 395/713 (55%), Gaps = 48/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   ++L+ L   + +H+  Y+    P + D+EYD L R    +    P+L     P+ 
Sbjct: 1   MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E   +  +V H +P LSL+ +++ E    F  R+      K  +++ +  E K
Sbjct: 58  PTQRVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSSDALTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED++  +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV+N V+  ++   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++ +ER  D +   F
Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPDDTRAIEF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PSHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++   +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLDRMGPKSAQNVVNALETAKKTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +   +               L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEKA----------SIDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNREVIGKLLAEGISWPAPVVVNAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL +
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGE 671


>gi|218548148|ref|YP_002381939.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ATCC 35469]
 gi|331684067|ref|ZP_08384663.1| DNA ligase, NAD-dependent [Escherichia coli H299]
 gi|254781331|sp|B7LL73|DNLJ_ESCF3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218355689|emb|CAQ88301.1| DNA ligase, NAD(+)-dependent [Escherichia fergusonii ATCC 35469]
 gi|315298233|gb|EFU57493.1| DNA ligase, NAD-dependent [Escherichia coli MS 16-3]
 gi|331079019|gb|EGI50221.1| DNA ligase, NAD-dependent [Escherichia coli H299]
          Length = 671

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|73541575|ref|YP_296095.1| NAD-dependent DNA ligase [Ralstonia eutropha JMP134]
 gi|123732913|sp|Q470D2|DNLJ_RALEJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|72118988|gb|AAZ61251.1| NAD-dependent DNA ligase [Ralstonia eutropha JMP134]
          Length = 711

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/726 (35%), Positives = 383/726 (52%), Gaps = 54/726 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P   L    A + +  L  E+  H+  YY    P I D+EYDAL     A+    P+L  
Sbjct: 15  PAGGLPPATAAERVQWLRDELDRHNYQYYVLDAPTIPDAEYDALFTELQALEAEHPELL- 73

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GG    +   V H +P LSL   ++ ED+  F  R  +   +       
Sbjct: 74  --TPDSPTQRVGGAPLSAFDTVRHRVPMLSLNNGFSDEDVTGFDRRCAQGLGRSAAAGGE 131

Query: 124 -------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176
                    + +  E K DG  +++RYE G+ V AA RGDG +GEDV+  +R I  IP  
Sbjct: 132 QDLFSAAEGVEYACELKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTVNVRTIKAIPLK 191

Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRY 235
           L    P ++EVRGEV++ + DF  LN      G K + NPRNAA+G LR+L+P     R 
Sbjct: 192 LRGAAPAVLEVRGEVFMYRRDFDKLNARQAEAGDKTFVNPRNAAAGSLRQLDPRITAKRP 251

Query: 236 LNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           L+FF +GLG+            ML     +G PV N         G++ +Y ++   R  
Sbjct: 252 LSFFAYGLGELQGIERPATHSAMLDGFATMGLPVCNERAVVKGAQGLLDFYRKVGEKRDQ 311

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LPYDIDG+VYKV+  + Q+QLG  +R+PR+ ++HKF  ++ +T + DI++Q+GRTG +TP
Sbjct: 312 LPYDIDGVVYKVNALAEQEQLGFVSRAPRFALAHKFPAQEMTTIVEDIEVQVGRTGAITP 371

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG  +TNATLHNED ++            +D+ +GD V+V+RAG+VIP+VV
Sbjct: 372 VARLQPVFVGGVTVTNATLHNEDEVRR-----------KDVHIGDTVIVRRAGDVIPEVV 420

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
            +++  R  DA+ F  P+ CP+C S + R  +       A  RCTGGL C+AQ+ + L H
Sbjct: 421 AVVLERRPDDARAFVMPTACPVCGSHIERLEDE------AIARCTGGLICAAQRKQALLH 474

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           F  R A +IEGLG + ++           +R PAD++ L         K+  +    D S
Sbjct: 475 FAQRRAMDIEGLGDKVVEQLVDQ----GIVRTPADLYKL------GVAKLAALDRMADKS 524

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             NL  +I   R+ +  RFIFSLGIRHVG   A+ LA+++                   D
Sbjct: 525 AGNLVAAIEASRSTTFNRFIFSLGIRHVGEATAKDLARHFGKLDGLMVA----------D 574

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLV 653
             +L+ V  VG ++AQ+IV F+  P N+  +E L                 + +  K  V
Sbjct: 575 EAALLEVNDVGPVVAQSIVNFFGEPHNVEVIEQLRAAGVHWPESEPVARAPAPLAGKTFV 634

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL  + R  A+E +   GA V+  +S+KTD ++ G   GSKL+KA+ LGV +++E  
Sbjct: 635 LTGTLPSLSREAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLDKAEALGVPVLDEAG 694

Query: 714 FLFLLQ 719
            L LL+
Sbjct: 695 MLALLE 700


>gi|332092973|gb|EGI98039.1| DNA ligase, NAD-dependent [Shigella boydii 3594-74]
          Length = 671

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|332162521|ref|YP_004299098.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606605|emb|CBY28103.1| DNA ligase [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325666751|gb|ADZ43395.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860741|emb|CBX71032.1| DNA ligase [Yersinia enterocolitica W22703]
          Length = 672

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 246/712 (34%), Positives = 403/712 (56%), Gaps = 47/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++   +    P+L  +   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITN---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R++   ++ D   + F  E K
Sbjct: 58  PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRAD--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           +    F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPLAGFEQLNNEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + R  G PV++ V+       ++++Y +++  R  L +DIDG+V KVD   
Sbjct: 236 PRSHIQRLMQFRAWGLPVSDRVKLCTGSEQVIAFYRQVEQDRGGLGFDIDGVVIKVDSLD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++++R  DA+  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PEHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+FTL         K+  +   G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFTLTA------GKLTGLDRMGPKSAQNLIVALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ + +N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNLENLRAA----------DIEALKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +V F     N   +EAL K ++    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVVNFLGEEHNQKVIEALEKVITWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL +
Sbjct: 619 RLAALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLLGE 670


>gi|330912204|gb|EGH40714.1| DNA ligase [Escherichia coli AA86]
          Length = 671

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E          + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIIINVEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|319782858|ref|YP_004142334.1| DNA ligase, NAD-dependent [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317168746|gb|ADV12284.1| DNA ligase, NAD-dependent [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 734

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 296/737 (40%), Positives = 440/737 (59%), Gaps = 32/737 (4%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+++LS  +A  EL  L +EI+ HD  Y+    P+I D+EYDAL RR  AI   FP L R
Sbjct: 5   PVDSLSESEAEAELKRLAEEIAEHDRRYHTEDAPVITDAEYDALARRNLAIEERFPALVR 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
               + P  ++G        KV H++P LSL K +  +D+  FI R  RF+ +  +  I 
Sbjct: 65  E---DSPSLRVGAAPAEGFTKVRHAVPMLSLAKAYTDDDVTDFIERGRRFFDRDKELDIA 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           FT EPKIDG   ++RYE G FV  A RG+G  GED++A ++ I  IP  L  +  PE IE
Sbjct: 122 FTAEPKIDGLSASLRYENGVFVQGATRGNGAVGEDITANLKTIADIPAKLKGSGWPETIE 181

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           +RGEVY++  +F AL     AVG + Y NPRN A+G LR+ +P+   +R L FF +  G 
Sbjct: 182 IRGEVYMTYAEFEALKQRSAAVGGQDYVNPRNTAAGSLRQKDPSVTASRNLKFFAYAWGY 241

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           T+   A  QY+ +QK    GF ++  + +A +   ++++Y+ ++  RS L YDIDG+VYK
Sbjct: 242 TTADPAPTQYDSVQKFAEWGFKISPLMVRAKSAEELIAHYHRIEEQRSALGYDIDGVVYK 301

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+  LQ++ G     PRW I+HKF  +QA T +  IDIQ+GRTG L PVARL PV +GG
Sbjct: 302 VDQLELQRRWGFVTGEPRWAIAHKFPAEQAMTTVQKIDIQVGRTGTLAPVARLAPVTVGG 361

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ N TLHNEDYIKGLD++G+ +R G D+R+GD V+++RAG+VIP++V +++++R  DA
Sbjct: 362 VVVENVTLHNEDYIKGLDSTGQPIRDGIDVRIGDTVVIQRAGDVIPQIVSVVIDKRPADA 421

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P+ FP  CPIC S   R++N KTGK  +  RCTG L C AQ +E L+HFVSR A +IEG
Sbjct: 422 VPYEFPHTCPICGSPATREINEKTGKEDSRRRCTGELICPAQAVEGLRHFVSRGALDIEG 481

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ----------------------TSTTK 523
           LG + +D FF     A  IR  ADIFTL+ R+                        +   
Sbjct: 482 LGAENIDTFFN----AGLIRTAADIFTLRDRRPAVTRALAERREEQARQREAASGKTRKN 537

Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
           + ++       +  L+ +I+ RR   L+RFIF+LGIRH+G   A  LA+ + + +   + 
Sbjct: 538 VRSVEDRNYEGLDKLFAAIDSRREPELDRFIFALGIRHIGETTAAVLARTFSTIEELIR- 596

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
           +    A   D       V  +GD +  A+ +F+ N RN   ++ALL++V P       + 
Sbjct: 597 VGKETAAAEDPHSVFPSVNGIGDTVIDALRDFFGNERNDDVLDALLRQVKPKPYIVNVSA 656

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
            SE+  K +VFTG+L+K+ R +A+    +LGA V+  +S KTD+++ G   GSKL+ A +
Sbjct: 657 DSEVAGKTVVFTGSLEKMTRSEAKAMAERLGAKVAGSVSAKTDLVVAGPGAGSKLKLASE 716

Query: 704 LGVKIMNEEQFLFLLQQ 720
           LG+++++E+ +L  + +
Sbjct: 717 LGIEVIDEDAWLARIGK 733


>gi|300940348|ref|ZP_07154941.1| DNA ligase, NAD-dependent [Escherichia coli MS 21-1]
 gi|300454839|gb|EFK18332.1| DNA ligase, NAD-dependent [Escherichia coli MS 21-1]
          Length = 671

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   + ALL E          + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISALLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669


>gi|15802944|ref|NP_288973.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 EDL933]
 gi|12516784|gb|AAG57530.1|AE005471_7 DNA ligase [Escherichia coli O157:H7 str. EDL933]
          Length = 671

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 390/711 (54%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y   +  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYXXXEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P++CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTYCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWXAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|82544871|ref|YP_408818.1| NAD-dependent DNA ligase LigA [Shigella boydii Sb227]
 gi|123741957|sp|Q31Y68|DNLJ_SHIBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81246282|gb|ABB66990.1| DNA ligase [Shigella boydii Sb227]
          Length = 671

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G     N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKLAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|296104078|ref|YP_003614224.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058537|gb|ADF63275.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 671

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 242/713 (33%), Positives = 394/713 (55%), Gaps = 48/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   ++++ L   + +H+  Y+    P + D+EYD L R    +    P+L     P+ 
Sbjct: 1   MDSIEQQITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRDLEAQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E   +  +V H +P LSL+ +++ E    F  R+      K  +++ +  E K
Sbjct: 58  PTQRVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSSDALTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED++  +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV+N V+  ++   ++++Y +++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSNRVQLCDSPEAVLAFYRKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++ +ER  D +   F
Sbjct: 356 ATLHNADEIDRL-----------GLRIGDKVVIRRAGDVIPQVVNVVQSERPDDTRAIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++   +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLDRMGPKSAQNVVNALEAAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ +     +               L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLDALEKA----------SIEELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL++          + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGKLLEQGIKWPAPVVVNAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671


>gi|319404500|emb|CBI78105.1| DNA ligase [Bartonella rochalimae ATCC BAA-1498]
          Length = 725

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 329/720 (45%), Positives = 465/720 (64%), Gaps = 16/720 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ L+  +A  EL  L +EI+ HD  Y++  +P I D+EYDAL RR + I   FP+L R+
Sbjct: 6   IKNLTALEAASELEWLAKEIARHDVLYHRDDQPEISDAEYDALCRRNEEIEALFPELIRA 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P +KIG  ++    K  H+ P LSL+  +N ED+ +FI RI RF +  +  +I  
Sbjct: 66  ---DSPSSKIGAPISEKFEKSIHAQPMLSLDNAFNFEDVSEFIERIRRFLRLPETQTIEM 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE GK V A  RG+G  GE+V+   R I  IP +L  N P+IIEVR
Sbjct: 123 TAEPKIDGLSLSLRYEAGKLVRAITRGNGSIGENVTTNARTIADIPEILQGNFPDIIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+ + DF  LN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ S
Sbjct: 183 GEVYMGQKDFQLLNINQQKEGKLVFANPRNAAAGSLRQLDSRITASRNLKFFAYAWGEVS 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ A+ Q  M++K++  GF +N   +       ++SYY+ ++  R +L YDIDG+VYKV+
Sbjct: 243 EMPAESQIGMMKKLKEYGFIINPLTKVFEKVEDLISYYHSIEECRQSLDYDIDGIVYKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQ +LG  ARSPRW I+HKF  ++A   L DIDIQ+GRTG LTPVARL P+ +GG +
Sbjct: 303 DLMLQTRLGFVARSPRWAIAHKFPAEKAIAFLEDIDIQVGRTGALTPVARLTPITVGGVV 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ITNA+LHNEDYIKG+   G+++R GRDIRVGD V+++RAG+VIP++VD++V +R  D   
Sbjct: 363 ITNASLHNEDYIKGIGHKGELIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRSKDTPA 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP+C S  VR+            RCTGGL CSAQ +ER+ HFVSR+AF+IEG G
Sbjct: 423 FIFPHVCPVCGSHAVREEGET------VRRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++FFF ++D    IR P DIFTLQRRQ+ S  ++EN+ GFG VSV  LY++IN RR 
Sbjct: 477 RKQVEFFFHAQDKTLCIRSPVDIFTLQRRQENSLRRLENMEGFGVVSVRKLYNAINARRE 536

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSLIRV 601
           ISL RF+F+LGIRH+G   A+ LA+ Y +Y  F       I      +  N+ W  L  +
Sbjct: 537 ISLSRFLFALGIRHIGEVKAQRLARAYQNYIAFETAAMTAIMPPDKNSEGNEIWKELTNI 596

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G  + +AI++FYQ   N   + ALLKEV+P          S I  K +VFTGTL+ +
Sbjct: 597 EGIGSRVGEAIIDFYQEVHNRDVLSALLKEVTPLHEAPIAIDYSPIVEKIIVFTGTLEHM 656

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R +A+    +LGA  S  +S+KTD+++ G   GSKL KAQQLG+++++E+ +L L+ ++
Sbjct: 657 SRDEAKSLAERLGAKTSNSISKKTDLLVAGFGAGSKLVKAQQLGIEVLDEKNWLKLIDEH 716


>gi|320180401|gb|EFW55332.1| DNA ligase [Shigella boydii ATCC 9905]
          Length = 671

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWSAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|24113756|ref|NP_708266.1| NAD-dependent DNA ligase LigA [Shigella flexneri 2a str. 301]
 gi|30063805|ref|NP_837976.1| NAD-dependent DNA ligase LigA [Shigella flexneri 2a str. 2457T]
 gi|110806352|ref|YP_689872.1| NAD-dependent DNA ligase LigA [Shigella flexneri 5 str. 8401]
 gi|81723177|sp|Q83K81|DNLJ_SHIFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|122366427|sp|Q0T298|DNLJ_SHIF8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|24052834|gb|AAN43973.1| DNA ligase [Shigella flexneri 2a str. 301]
 gi|30042060|gb|AAP17786.1| DNA ligase [Shigella flexneri 2a str. 2457T]
 gi|110615900|gb|ABF04567.1| DNA ligase [Shigella flexneri 5 str. 8401]
 gi|281601828|gb|ADA74812.1| DNA ligase, NAD-dependent [Shigella flexneri 2002017]
 gi|313650866|gb|EFS15266.1| DNA ligase, NAD-dependent [Shigella flexneri 2a str. 2457T]
 gi|332755453|gb|EGJ85817.1| DNA ligase, NAD-dependent [Shigella flexneri K-671]
 gi|332756263|gb|EGJ86614.1| DNA ligase, NAD-dependent [Shigella flexneri 2747-71]
 gi|333002064|gb|EGK21630.1| DNA ligase, NAD-dependent [Shigella flexneri K-218]
          Length = 671

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G     N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKLAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|333001543|gb|EGK21111.1| DNA ligase, NAD-dependent [Shigella flexneri VA-6]
 gi|333002206|gb|EGK21770.1| DNA ligase, NAD-dependent [Shigella flexneri K-272]
 gi|333016032|gb|EGK35364.1| DNA ligase, NAD-dependent [Shigella flexneri K-227]
          Length = 671

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G     N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKLAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|218705919|ref|YP_002413438.1| NAD-dependent DNA ligase LigA [Escherichia coli UMN026]
 gi|293405854|ref|ZP_06649846.1| DNA ligase [Escherichia coli FVEC1412]
 gi|298381604|ref|ZP_06991203.1| DNA ligase [Escherichia coli FVEC1302]
 gi|254781326|sp|B7N602|DNLJ_ECOLU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218433016|emb|CAR13911.1| DNA ligase, NAD(+)-dependent [Escherichia coli UMN026]
 gi|284922366|emb|CBG35453.1| DNA ligase [Escherichia coli 042]
 gi|291428062|gb|EFF01089.1| DNA ligase [Escherichia coli FVEC1412]
 gi|298279046|gb|EFI20560.1| DNA ligase [Escherichia coli FVEC1302]
          Length = 671

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQERLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|110642595|ref|YP_670325.1| NAD-dependent DNA ligase LigA [Escherichia coli 536]
 gi|191174600|ref|ZP_03036093.1| DNA ligase, NAD-dependent [Escherichia coli F11]
 gi|300997757|ref|ZP_07181842.1| DNA ligase, NAD-dependent [Escherichia coli MS 200-1]
 gi|306814500|ref|ZP_07448662.1| NAD-dependent DNA ligase LigA [Escherichia coli NC101]
 gi|122958158|sp|Q0TF55|DNLJ_ECOL5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110344187|gb|ABG70424.1| DNA ligase [Escherichia coli 536]
 gi|190905126|gb|EDV64772.1| DNA ligase, NAD-dependent [Escherichia coli F11]
 gi|222034142|emb|CAP76883.1| DNA ligase [Escherichia coli LF82]
 gi|300304141|gb|EFJ58661.1| DNA ligase, NAD-dependent [Escherichia coli MS 200-1]
 gi|305851894|gb|EFM52346.1| NAD-dependent DNA ligase LigA [Escherichia coli NC101]
 gi|312947007|gb|ADR27834.1| NAD-dependent DNA ligase LigA [Escherichia coli O83:H1 str. NRG
           857C]
 gi|324011127|gb|EGB80346.1| DNA ligase, NAD-dependent [Escherichia coli MS 60-1]
          Length = 671

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E          + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLHLL 669


>gi|114319842|ref|YP_741525.1| DNA ligase, NAD-dependent [Alkalilimnicola ehrlichii MLHE-1]
 gi|122312282|sp|Q0AAV2|DNLJ_ALHEH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|114226236|gb|ABI56035.1| DNA ligase, NAD-dependent [Alkalilimnicola ehrlichii MLHE-1]
          Length = 673

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 257/715 (35%), Positives = 391/715 (54%), Gaps = 47/715 (6%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A +    +  + +L +EI  HD  YY    P+I D+EYDAL     A+    P+L     
Sbjct: 2   AQTGTDPQARIEALRREIREHDHRYYVLDAPVIADAEYDALMAELQALEAEHPELI---T 58

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+ P  ++ G       +VTH+ P LSL+  +   DL +F  R+ +       + + +  
Sbjct: 59  PDSPSQRVAGRPAEGFGEVTHAEPMLSLDNAFEEADLAEFDRRVRQALGL---DPVVYVA 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189
           EPK+DG  ++IRYE G+ V A  RGDG  GE ++  +R I ++P  L     P ++EVRG
Sbjct: 116 EPKLDGLSVSIRYEDGRLVRAGTRGDGRVGEAITENVRTIRSVPLRLRGEGWPPVMEVRG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EV I + DF  LN++ +A G +P+ANPRNAA+G LR+L+P     R L FF  G+     
Sbjct: 176 EVVIRRADFERLNEQRLADGERPFANPRNAAAGSLRQLDPRITARRRLTFFTFGVAAAGR 235

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + A    E+L K+   GF VN  V +     G   YY  + + R  L ++IDG+VYKVD+
Sbjct: 236 LAASHH-EVLDKLAGWGFRVNERVERVRGLDGCREYYQRLLADRDELSFEIDGVVYKVDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +++LG  AR+PRW I+ K   ++A+T +  I   +GRTG +TPVA LEPV +GG  +
Sbjct: 295 LDAREELGFTARAPRWAIAWKLPAQEATTVVRRILPSVGRTGAITPVAELEPVGVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN D ++            +D+R GD V+V+RAG+VIP++  ++  +R   A+P+
Sbjct: 355 SRATLHNLDEVRR-----------KDVRKGDTVMVRRAGDVIPEITAVVTEKRPEGAEPW 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           + P+ CP+C S V+R  +       A HRC GGL C AQ+   L HF SR A +I+GLG+
Sbjct: 404 AMPAECPVCGSEVLRLDDE------AVHRCMGGLYCPAQREGALLHFASRKALDIDGLGE 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +    +       +R PAD+FTL+  Q         +   GD S  NL  +++K R  
Sbjct: 458 KVVSQLVER----GMVRSPADLFTLEHCQLAG------LERMGDKSADNLVAALDKARRT 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF+++LGI+HVG   AR LA+++ S +               D  +L   P VG ++
Sbjct: 508 TLPRFLYALGIQHVGEVTARRLAEHFGSLEAIMNA----------DESALAETPDVGPVV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           AQAI  F+  P N   V+AL             +     +  +  V TGTL  + R +A+
Sbjct: 558 AQAIAHFFAEPHNREVVQALRAAGVTWEEVDPAERGEQPLAGRTFVLTGTLSGMTRDEAK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             +  LGA VS  +S+KTD ++ G+  GSKL KA+ LGV++++E+    LLQ++ 
Sbjct: 618 AALEALGARVSGSVSKKTDYLVAGEKAGSKLAKAESLGVEVLDEQALQALLQEHG 672


>gi|324112923|gb|EGC06899.1| DNA ligase [Escherichia fergusonii B253]
          Length = 671

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRSGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
               F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HAHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|331663971|ref|ZP_08364881.1| DNA ligase, NAD-dependent [Escherichia coli TA143]
 gi|331059770|gb|EGI31747.1| DNA ligase, NAD-dependent [Escherichia coli TA143]
          Length = 671

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQERLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|156933031|ref|YP_001436947.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii ATCC BAA-894]
 gi|166215403|sp|A7MKW4|DNLJ_ENTS8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|156531285|gb|ABU76111.1| hypothetical protein ESA_00834 [Cronobacter sakazakii ATCC BAA-894]
          Length = 672

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 251/714 (35%), Positives = 398/714 (55%), Gaps = 49/714 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R   A+  A P+L     P+ 
Sbjct: 1   MESIEEKLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G        +V H +P LSL+ +++      F  R+      K  +++ +  E K
Sbjct: 58  PTQRVGAAPLTEFSQVRHEVPMLSLDNVFDEASFLAFNKRVQDRL--KSTDALVYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GED++  +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLRGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   E LQ+ +  G PV++ +R   T   ++++Y+++++ R TL +DIDG+V KVD   
Sbjct: 236 PRSHMERLQQFKAWGLPVSDRIRLVKTPEEVLAFYHQVEADRPTLGFDIDGVVIKVDSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PAQCPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  NL +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNLVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA ++ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEALINA----------SIDDLQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F++   N   +  L +EV            + + S    K +V TGTL ++ R  A
Sbjct: 559 HVFNFFEEESNRAVIRDLTEEVGIHWPAPQVVKAEEIDSPFAGKTVVLTGTLSQMSRDDA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL +
Sbjct: 619 KARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGE 672


>gi|238792031|ref|ZP_04635667.1| DNA ligase [Yersinia intermedia ATCC 29909]
 gi|238728662|gb|EEQ20180.1| DNA ligase [Yersinia intermedia ATCC 29909]
          Length = 670

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 243/712 (34%), Positives = 397/712 (55%), Gaps = 47/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++  ++    P+L      + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRSLEAQHPELI---THDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ +    F  R++     K    + F  E K
Sbjct: 58  PTQRVGAAPLDAFEQVRHEVPMLSLDNVFDEDSYLAFDKRVHDRL--KSAEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP  L     P+ +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGENIPQRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF- 250
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNEEARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLMFFCYGVGLLDGGDL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+N V+       ++++Y +++  R++L +DIDG+V KVD   
Sbjct: 236 PRSHIQRLMQFKAWGLPVSNRVKLCTGSDEVIAFYRQVEQDRTSLGFDIDGVVIKVDSLD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFQAQEQITQVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            IR+GD V+++RAG+VIP+VV +++ +R  D +   F
Sbjct: 356 ATLHNADEIERL-----------GIRIGDTVIIRRAGDVIPQVVGVVMEQRPQDTKEIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PQHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+F L         K+  +   G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFELTA------GKLTGLDRMGPKSAQNLIAALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFCNLDNLRAA----------DIDALKSVPDVGEVVAR 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F     N   + AL K +S    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVRNFLSEEHNQKVIAALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL +
Sbjct: 619 RLAALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLLGE 670


>gi|123441550|ref|YP_001005536.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166216254|sp|A1JLA4|DNLJ_YERE8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|122088511|emb|CAL11304.1| DNA ligase [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 672

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 246/712 (34%), Positives = 402/712 (56%), Gaps = 47/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++   +    P+L  +   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITN---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R++   ++ D   + F  E K
Sbjct: 58  PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRAD--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           +    F  LNDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPLAGFEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+  V+       ++++Y +++  R  L +DIDG+V KVD   
Sbjct: 236 PRSHIQRLMQFKAWGLPVSERVKLCTGSEQVIAFYRQVEQDRGGLGFDIDGVVIKVDSLD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++++R  DA+  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PEHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+FTL         K+  +   G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFTLTA------GKLTGLDRMGPKSAQNLIVALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ + +N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNLENLRAA----------DIEALKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +V F     N   +EAL K ++    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVVNFLGEEHNQKVIEALEKVITWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL +
Sbjct: 619 RLAALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLLGE 670


>gi|22125389|ref|NP_668812.1| NAD-dependent DNA ligase LigA [Yersinia pestis KIM 10]
 gi|45442391|ref|NP_993930.1| NAD-dependent DNA ligase LigA [Yersinia pestis biovar Microtus str.
           91001]
 gi|108808172|ref|YP_652088.1| NAD-dependent DNA ligase LigA [Yersinia pestis Antiqua]
 gi|108811556|ref|YP_647323.1| NAD-dependent DNA ligase LigA [Yersinia pestis Nepal516]
 gi|145599373|ref|YP_001163449.1| NAD-dependent DNA ligase LigA [Yersinia pestis Pestoides F]
 gi|149365146|ref|ZP_01887181.1| DNA ligase [Yersinia pestis CA88-4125]
 gi|162420672|ref|YP_001607138.1| NAD-dependent DNA ligase LigA [Yersinia pestis Angola]
 gi|165926903|ref|ZP_02222735.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165940356|ref|ZP_02228875.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011271|ref|ZP_02232169.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212520|ref|ZP_02238555.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398917|ref|ZP_02304441.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167421338|ref|ZP_02313091.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424444|ref|ZP_02316197.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167470665|ref|ZP_02335369.1| DNA ligase, NAD-dependent [Yersinia pestis FV-1]
 gi|218930038|ref|YP_002347913.1| NAD-dependent DNA ligase LigA [Yersinia pestis CO92]
 gi|229838581|ref|ZP_04458740.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229895648|ref|ZP_04510819.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Pestoides A]
 gi|229899147|ref|ZP_04514290.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229901826|ref|ZP_04516947.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Nepal516]
 gi|270490015|ref|ZP_06207089.1| DNA ligase (NAD(+)) [Yersinia pestis KIM D27]
 gi|122980211|sp|Q1CJV7|DNLJ_YERPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123372308|sp|Q1C5X9|DNLJ_YERPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123776939|sp|Q7CJF3|DNLJ_YERPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216255|sp|A4TMG4|DNLJ_YERPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781914|sp|A9QZH0|DNLJ_YERPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|21958274|gb|AAM85063.1|AE013752_4 DNA ligase [Yersinia pestis KIM 10]
 gi|45437255|gb|AAS62807.1| DNA ligase [Yersinia pestis biovar Microtus str. 91001]
 gi|108775204|gb|ABG17723.1| DNA ligase [Yersinia pestis Nepal516]
 gi|108780085|gb|ABG14143.1| DNA ligase [Yersinia pestis Antiqua]
 gi|115348649|emb|CAL21593.1| DNA ligase [Yersinia pestis CO92]
 gi|145211069|gb|ABP40476.1| DNA ligase [Yersinia pestis Pestoides F]
 gi|149291559|gb|EDM41633.1| DNA ligase [Yersinia pestis CA88-4125]
 gi|162353487|gb|ABX87435.1| DNA ligase, NAD-dependent [Yersinia pestis Angola]
 gi|165911711|gb|EDR30369.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921254|gb|EDR38478.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989949|gb|EDR42250.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206451|gb|EDR50931.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166960827|gb|EDR56848.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051421|gb|EDR62829.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056326|gb|EDR66095.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229680722|gb|EEO76817.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Nepal516]
 gi|229687549|gb|EEO79622.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229694947|gb|EEO84994.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229701454|gb|EEO89482.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Pestoides A]
 gi|270338519|gb|EFA49296.1| DNA ligase (NAD(+)) [Yersinia pestis KIM D27]
          Length = 670

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 244/712 (34%), Positives = 400/712 (56%), Gaps = 47/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD + ++   +    P+L  +   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTN---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R++     K    + F  E K
Sbjct: 58  PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRL--KTAEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+  V+       ++++Y +++  R+ L +DIDG+V KVD+ +
Sbjct: 236 PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  D +  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PSQCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+F L         K+  +   G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFQLTA------GKLTGLDRMGPKSAQNLIAALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNLRAA----------DIETLKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +E L K VS    +    +   S    K +V TG+L  + R +A++
Sbjct: 559 HVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEESDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +T LGA VS  +S+KT ++I G+  GSKL KAQ+LG+K+++E + + LL +
Sbjct: 619 RLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLLGE 670


>gi|312114833|ref|YP_004012429.1| DNA ligase, NAD-dependent [Rhodomicrobium vannielii ATCC 17100]
 gi|311219962|gb|ADP71330.1| DNA ligase, NAD-dependent [Rhodomicrobium vannielii ATCC 17100]
          Length = 777

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 299/739 (40%), Positives = 437/739 (59%), Gaps = 51/739 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E LS E A+ E  +L  EI+ HD  Y Q + P I D+EYD L+ R +A+  AFP L    
Sbjct: 57  EHLSAEDAKDEHDALAAEIARHDLLY-QDAAPEISDAEYDRLRLRLNALEAAFPSLI--- 112

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P  P   +G   +    KV H++  LSL  +++ ED+  F  R+ RF +   D ++  T
Sbjct: 113 TPESPSQTVGATPSEKFAKVRHTVRMLSLGNVFSDEDVADFAGRVRRFLKFAPDEALDVT 172

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVR 188
            E KIDG  +++RYE G+   AA RGDG  GEDV+A +R I  IP+V+   ++P + EVR
Sbjct: 173 AEMKIDGLSVSLRYENGRLAVAATRGDGSEGEDVTANVRTIADIPQVIRANDVPAVFEVR 232

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+S  DF ALN+  +  G + +ANPRNAA+G LR+L+P     R L FF  G G+  
Sbjct: 233 GEVYMSHADFQALNERQVGKGGRMFANPRNAAAGSLRQLDPAITAARPLRFFAWGWGEVR 292

Query: 248 EI------FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
                    A   + +LQ +   GFP+   V    +   +++ Y  ++  R++L YDIDG
Sbjct: 293 GWGEASALPADTNFGVLQAIHGWGFPLPP-VEICRSVEEMLAVYRAIEMKRASLGYDIDG 351

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKV+   LQ++LG  +R+PRW  +HKF+ ++A+T L  IDIQ+GRTG LTPVA+L PV
Sbjct: 352 VVYKVNRLDLQERLGFISRTPRWATAHKFSAEKATTVLNGIDIQVGRTGALTPVAKLAPV 411

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG ++ NATLHNED I+            +D+R+GD V+V+RAG+VIP+++  ++ +R
Sbjct: 412 TVGGVVVQNATLHNEDEIRR-----------KDVRIGDTVIVQRAGDVIPQILGPVLEQR 460

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             DA  F FP+ CP+C S  VR+ +PKTGK+ A  RCTGGL C+AQ +ERL+HFVSR AF
Sbjct: 461 PADAVEFVFPTLCPVCGSHAVRETHPKTGKVDAVRRCTGGLICAAQAVERLRHFVSRHAF 520

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IEGLG++ +  FF        I+ PADIFT+  R      K+    G+G  S  NL+ +
Sbjct: 521 DIEGLGEKNIQAFFDE----GRIKAPADIFTMAARDGVDLPKLSEKEGWGAQSAANLFAA 576

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI-- 599
           I  RR ISLERFIF+LGIRHVG   A+ LAK + S       +    A        L+  
Sbjct: 577 IEARRTISLERFIFALGIRHVGETTAKLLAKTFGSLDALRAAMAEPDAAELRPGDELLLE 636

Query: 600 --------------------RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639
                                +  +GD++AQ+IV+F+  P N  AV+AL +E++    + 
Sbjct: 637 SASGEDKRSLHRAIILAKLNEIDGIGDVVAQSIVDFFDEPHNREAVDALRRELTIEAYKP 696

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
           ++ VSS +    +VFTG L++  R +A+    + GA V+  +S+ T  ++ G   GSKL+
Sbjct: 697 DQ-VSSLLAGATVVFTGKLERFTRDEAKAQAERFGAKVAGSVSKATTYLVAGPGAGSKLK 755

Query: 700 KAQQLGVKIMNEEQFLFLL 718
           KA+ LGVK+M E+++L ++
Sbjct: 756 KAEDLGVKVMTEDEWLEMI 774


>gi|333016518|gb|EGK35849.1| DNA ligase, NAD-dependent [Shigella flexneri K-304]
          Length = 671

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARCTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G     N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKLAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|322831833|ref|YP_004211860.1| DNA ligase, NAD-dependent [Rahnella sp. Y9602]
 gi|321167034|gb|ADW72733.1| DNA ligase, NAD-dependent [Rahnella sp. Y9602]
          Length = 673

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 252/715 (35%), Positives = 403/715 (56%), Gaps = 50/715 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    +++S L  ++ +H+  Y+    P + D+EYD L R    +  A P+L  +   + 
Sbjct: 1   MATIEEQISQLRTQLRHHEYQYHVLDAPEVPDAEYDRLMRELRELETAHPELVTA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R+      K   ++ F  E K
Sbjct: 58  PTQRVGAAPLSAFEQVRHRVPMLSLDNVFDEESYLAFYKRVQDRL--KTAEALTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP  L  +  PE +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELVQAATRGDGTTGENITANVRTIRAIPLRLHGDNIPERLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F A+NDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEAMNDEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +  +  LQ+ +  G PV++ VR       ++++Y ++++ R +L +DIDG+V K+D   
Sbjct: 236 PRSHFARLQQFKAWGLPVSDRVRLCTGSEEVLAFYRQVEADRPSLGFDIDGVVVKIDSLD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q+ LG  AR+PRW  + KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 IQETLGFVARAPRWATAFKFPAQEQITLVKDVEFQVGRTGAITPVARLEPVLVAGVMVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV ++++ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVLDERPEDAREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCT GL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCHSDVERVEGE------AVARCTAGLICGAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     ++ PAD+F L         K+  +   G  S  N+  ++ K +  +L
Sbjct: 459 IDQLVEKE----YVKTPADLFRLTA------GKLTGLDRMGPKSAQNVVRALEKAKETTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA +Y S +               D  SL  V  VGD++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHYGSVEALKAA----------DIESLKGVQDVGDVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLK-EVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHK 665
            +V F     N   ++ LL  E++      +    + + S    K +V TG+L  + R  
Sbjct: 559 HVVNFLSEEHNQQVIDELLSPEINIHWPEVQVIVPEEIDSPFAGKTVVLTGSLSILSRDD 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 619 AKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMIRLLGE 673


>gi|163794455|ref|ZP_02188426.1| NAD-dependent DNA ligase [alpha proteobacterium BAL199]
 gi|159180179|gb|EDP64702.1| NAD-dependent DNA ligase [alpha proteobacterium BAL199]
          Length = 696

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 282/714 (39%), Positives = 414/714 (57%), Gaps = 29/714 (4%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E LS  +A+ EL  L   IS  D  Y+    P++ D+EYDAL+RR  AI   FPDL  
Sbjct: 11  PVEELSDAEAKAELRRLSDAISEADRQYHVEDAPVLTDAEYDALRRRNQAIEERFPDLKL 70

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           +   + P  ++    +    KV H+ P LSL   +N ED+ +F  R+ RF    +++ + 
Sbjct: 71  A---DSPSERVAPGPSEGFSKVRHARPMLSLANAFNDEDVHEFARRVRRFLSLGEEDELA 127

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
              EPKIDG    +RY  G+    A RGDG  GE+++  +  +  +P  L   +P I+EV
Sbjct: 128 LVAEPKIDGLSAALRYVDGRLEVGATRGDGTEGENITRNLETLDDVPTTLPAGVPGILEV 187

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY++K+DF+ALND     G K +ANPRNAA+G LR+L+PT    R L FF +  G+ 
Sbjct: 188 RGEVYMTKDDFVALNDRQAKAGGKIFANPRNAAAGSLRQLDPTITAARPLRFFAYSWGEI 247

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE  A   +E L+K+   GF  N   ++  +    ++ Y ++   R+TLPYDIDG+VYKV
Sbjct: 248 SENIADTHWEFLKKLEAWGFTTNPLSQRCESVESALAVYADIGERRTTLPYDIDGVVYKV 307

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D    Q++LG  +R+PRW I+HKF  +QA T L  I+IQ+GRTG LTPVARLEPV + G 
Sbjct: 308 DRLDWQQRLGMVSRAPRWAIAHKFKAEQAETVLKAIEIQVGRTGALTPVARLEPVKVAGV 367

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHNE  I+            +D+RVGD V+++RAG+VIP+VV +I+ +R  D+ 
Sbjct: 368 TVSNATLHNEGEIRR-----------KDVRVGDTVVIQRAGDVIPQVVRVILEKRPADSV 416

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            + FP  CP C S   +          A  RCTGGL C AQ +ERLKHFVSRDAF+IEGL
Sbjct: 417 EYVFPETCPECGSDAEQPEGE------AIRRCTGGLICPAQAVERLKHFVSRDAFDIEGL 470

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q+D F+ +      I+ P DIF L++ +      +    G   +S  NL  +I  RR
Sbjct: 471 GSKQIDGFYSN----GLIKRPGDIFRLKQHRD----VLIGEKGTKTISTDNLLAAIEDRR 522

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +I  +RFI+SLGIR VG   AR LA  Y + +     +       ++    L+ +  +G 
Sbjct: 523 SIGFDRFIYSLGIRQVGQATARLLAINYGTLEALRTAMAAAHDPESEAHADLLNIDQIGS 582

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +A+ + +F+    N   ++ L  E++ +         S I  K +VFTGTL +I R++A
Sbjct: 583 SVAKDLADFFAEDHNAEVLDDLAAELTIAPFAAPAASDSPIAGKTVVFTGTLTRIGRNEA 642

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +     LGA V+  +S+KTD +I+G + GSK  KA+ LGV  ++E+++  L+ +
Sbjct: 643 KAKAESLGAKVAGSVSKKTDYVIIGADAGSKAAKAEALGVPTLSEDEWFTLIGE 696


>gi|212638096|ref|YP_002314616.1| NAD-dependent DNA ligase LigA [Anoxybacillus flavithermus WK1]
 gi|254781544|sp|B7GFV1|DNLJ_ANOFW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|212559576|gb|ACJ32631.1| NAD-dependent DNA ligase [Anoxybacillus flavithermus WK1]
          Length = 672

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 254/711 (35%), Positives = 394/711 (55%), Gaps = 52/711 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
              K+++ L ++I  H+  YY   +P I D+EYD L R+   +   +P       P+ P 
Sbjct: 8   DVEKQIAELREQIEKHNYAYYVLDQPSISDAEYDELMRKLMELEEQYPQYK---TPDSPS 64

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG    +  KVTH +P LSL   +N  DLR F  R+      ++   + +  E KID
Sbjct: 65  QRVGGAPLEAFRKVTHRVPMLSLSNAFNEGDLRDFDRRVR-----QEVGDVRYVCELKID 119

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++RYE G FV  A RGDG +GED++  ++ I ++P  L   +   IEVRGE Y+ +
Sbjct: 120 GLAVSLRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLRQQV--TIEVRGEAYMPR 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN++    G + +ANPRNAA+G LR+L+P    +R L+ F + +    E+     
Sbjct: 178 KSFEKLNEKRKMNGEELFANPRNAAAGSLRQLDPKVAASRQLDIFAYHVVNAEELGILSH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
              L  +  LGF  N   +   T   ++SY  +    R++LPYDIDG+V KVD F+ QKQ
Sbjct: 238 SAALNYLDELGFKTNPARQVCETIDDVLSYIEQWHERRASLPYDIDGIVIKVDAFAQQKQ 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++  T+L+DI++ +GRTG++TP A L+PV + G ++  A+LH
Sbjct: 298 LGATAKSPRWAIAYKFPAEEVVTQLVDIELSVGRTGVVTPTAILQPVRVAGTIVQRASLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NEDYI+            +DIR+GD V++K+AG++IP+VV  +   R    +PF  P+ C
Sbjct: 358 NEDYIR-----------EKDIRLGDYVVIKKAGDIIPEVVCSLPERRTGKEEPFDMPTHC 406

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S +VR  +        A RC     C AQ  E L HFVSR A NI+GLG++ +   
Sbjct: 407 PACASELVRLDDE------VALRCVNPQ-CPAQIREGLIHFVSRQAMNIDGLGEKVIAQL 459

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+       +R  AD++TL + +  +      +   G+ S TNL  +I   +  SLER +
Sbjct: 460 FEHR----LVRSVADLYTLTKDELVA------LERMGEKSATNLLQAIEASKQNSLERLL 509

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIRHVGA+ A++LA+++ + +   Q               L+ +  +G+ +A +IV 
Sbjct: 510 FGLGIRHVGAKAAKTLAEHFETMERLQQATK----------EELMAIHEIGEKMADSIVT 559

Query: 615 FYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           ++        +E L            +   ++SS    K  V TGTLQ + R +A+E + 
Sbjct: 560 YFSKEEVKQLLERLRAYGVNMTYKGAKQTIDISSTFAGKTFVLTGTLQSMSRSEAKEKIE 619

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  V+  +S+KTD+++VG++ GSKLEKA+QLG+ I +E +FL  +QQ  
Sbjct: 620 TLGGKVTGSVSKKTDVVVVGEDAGSKLEKAKQLGITIWDEARFLQEIQQSK 670


>gi|238895883|ref|YP_002920619.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae NTUH-K2044]
 gi|238548201|dbj|BAH64552.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 671

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 247/713 (34%), Positives = 395/713 (55%), Gaps = 48/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R+   +    P+L     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  D   + +  E K
Sbjct: 58  PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDH--LTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   +T   +++YY +++  R  L +DIDG+V KVD  +
Sbjct: 236 PASHSARLLQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GD+V+++RAG+VIP+VV+++++ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFRLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA ++ + +   Q               L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEALEQAT----------IEELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
               F+    N   +  LL E            + + S    K +V TG+L ++ R  A+
Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           E +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 619 ERLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671


>gi|262042032|ref|ZP_06015211.1| DNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259040623|gb|EEW41715.1| DNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 671

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 246/713 (34%), Positives = 394/713 (55%), Gaps = 48/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R+   +    P+L     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  D   + +  E K
Sbjct: 58  PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDH--LTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   +T   +++YY +++  R  L +DIDG+V KVD  +
Sbjct: 236 PASHSARLLQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GD+V+++RAG+VIP+VV+++++ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA ++ + +   Q               L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEALEQA----------SIEELQKVPDVGIVVAA 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
               F+    N   +  LL E            + + S    K +V TG+L ++ R  A+
Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671


>gi|51597030|ref|YP_071221.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis IP
           32953]
 gi|186896113|ref|YP_001873225.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis PB1/+]
 gi|81638946|sp|Q668M6|DNLJ_YERPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781913|sp|B2K917|DNLJ_YERPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|51590312|emb|CAH21949.1| DNA ligase [Yersinia pseudotuberculosis IP 32953]
 gi|186699139|gb|ACC89768.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis PB1/+]
          Length = 670

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 244/712 (34%), Positives = 400/712 (56%), Gaps = 47/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD + ++   +    P+L  +   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTN---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R++     K    + F  E K
Sbjct: 58  PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRL--KTAEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+  V+       ++++Y +++  R+ L +DIDG+V KVD+  
Sbjct: 236 PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLV 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  D +  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PSQCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+F L         K+  +   G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFQLTA------GKLTGLDRMGPKSAQNLIAALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNLRAA----------DIETLKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +E L K VS    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +T LGA VS  +S+KT ++I G+  GSKL KAQ+LG+K+++E + + LL +
Sbjct: 619 RLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLLGE 670


>gi|220935192|ref|YP_002514091.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. HL-EbGR7]
 gi|254781444|sp|B8GTL0|DNLJ_THISH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219996502|gb|ACL73104.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. HL-EbGR7]
          Length = 675

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 257/717 (35%), Positives = 385/717 (53%), Gaps = 50/717 (6%)

Query: 12  LSI--EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +S   E+ RK ++SL  E+ YH+  YY    P I D+ YDAL R    +   +P+L    
Sbjct: 1   MSEIPEKVRKRVASLRDELDYHNHRYYVLDDPEIPDAAYDALMRELQDLEAKYPELV--- 57

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG    +  +  H +P LSL+  +   D+  F  RI     ++  + I F 
Sbjct: 58  TPDSPTQRVGGAPLKAFEEARHLLPMLSLDNAFEEADVLAFEKRIRDRLGEE--SEIEFA 115

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
           +EPK+DG  I++ YE G  V  A RGDG +GEDV+A +R I  IP  L     P+++EVR
Sbjct: 116 VEPKLDGLAISLLYEDGHLVRGATRGDGATGEDVTANVRTIRAIPLRLQGRGWPKLLEVR 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247
           GEVY+ +  F A N E  + G K + NPRNAA+G LR+L+      R L FF +G G   
Sbjct: 176 GEVYMDRAGFEAFNREAASRGEKVFVNPRNAAAGSLRQLDSRITAKRPLTFFAYGAGHVE 235

Query: 248 E-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                     +L  +   G  V           G + YY  +   R  LPYDIDG+VYKV
Sbjct: 236 GGELPDTHAAVLDALAEWGQRVCPERDVVTGAAGCLEYYRRIGERRDGLPYDIDGVVYKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           + F LQ++LG  +R+PRW I+HK+  ++  T L D++ Q+GRTG LTPVARLEPV +GG 
Sbjct: 296 NRFELQQRLGFVSRAPRWAIAHKYPAQEQMTLLRDVEFQVGRTGALTPVARLEPVFVGGV 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN D ++            +D+R+GD V+V+RAG+VIP+V  ++++ R  +A+
Sbjct: 356 TVSNATLHNMDEVER-----------KDVRIGDTVIVRRAGDVIPEVAAVVLSRRPHNAR 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P+ CP+C S +VR          A  RC+GGL C+AQ+ E +KHF SR A +IEGL
Sbjct: 405 HVVMPTHCPVCGSEIVRSEGE------AVARCSGGLYCAAQRREAIKHFASRRAMDIEGL 458

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++        A  +     ++ L   Q         +   G+ S  NL D++ K +
Sbjct: 459 GDKLVEQLVD----AGLVDHVDGLYRLTAEQLAG------LERMGEKSAHNLVDALEKSK 508

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +  L RFIF+LGIR VG   AR+LA ++                   D  +L++VP VG 
Sbjct: 509 HTQLARFIFALGIREVGEATARALAIHFGGLDALMAA----------DEEALMQVPDVGP 558

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE---KNVSSEIENKKLVFTGTLQKIQR 663
           ++A  +  F+Q P N   ++AL +             +     +     V TG L+ + R
Sbjct: 559 VVAHHVATFFQQPHNREVIDALREAGVHWEESEPAALQAEDLPLSGNTYVLTGALESMTR 618

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +A + +  LGA VS  +S+KT  +I G+  GSKL KA++LGV +++E +FL L+ +
Sbjct: 619 EEAGDRLMALGAKVSGSVSKKTTAVIAGEAAGSKLAKAEKLGVPVLSEAEFLELIGE 675


>gi|296445905|ref|ZP_06887856.1| DNA ligase, NAD-dependent [Methylosinus trichosporium OB3b]
 gi|296256573|gb|EFH03649.1| DNA ligase, NAD-dependent [Methylosinus trichosporium OB3b]
          Length = 713

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 287/714 (40%), Positives = 445/714 (62%), Gaps = 23/714 (3%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           +R+  P+  LS  +A+ E S L +EI+ +D  YYQ   P I D+EYDAL++R +A+  AF
Sbjct: 15  ERERPPVAELSPRRAKLEHSRLAEEIAEYDRRYYQEDDPAISDAEYDALRQRYEALEKAF 74

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P+L            +G        K+ H +  LSL  ++  E++ +F+ R+ RF    D
Sbjct: 75  PELGGDA---SLTKTVGAAPAEKFAKIRHVVRMLSLGNVFADEEVHEFVARVRRFLNFSD 131

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-I 181
              + FT EPKIDG   ++RYEKG+ V AA RGDG  GED++A IR +  IP+ L  + I
Sbjct: 132 AAPLLFTAEPKIDGLSCSLRYEKGELVSAATRGDGEEGEDITANIRTLEEIPQRLRGDVI 191

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240
           PE++E+RGEVY+ + DF ALN      G+  +ANPRN+A+G LR+L+P    +R L FF 
Sbjct: 192 PEVLEIRGEVYMRREDFFALNQRQAEAGKPLFANPRNSAAGSLRQLDPNVTASRPLRFFA 251

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           +G G+ S + A  Q  M+Q     G   N   +   +   ++++Y  ++++R+TL YDID
Sbjct: 252 YGWGEVSVMPADTQLGMVQAFASFGLATNPLTQLCGSAEELLAHYRNIEALRATLGYDID 311

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+VYKVD+  LQ +LG  +R+PRW ++HKF  +QA T + DI+I +GRTG LTP+ARLEP
Sbjct: 312 GVVYKVDDIGLQIRLGFVSRAPRWAVAHKFPAEQAKTIVRDIEINVGRTGALTPIARLEP 371

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GG +++NATLHNED I             +DIR+GD V+V+RAG+VIP++V++++++
Sbjct: 372 VTVGGVVVSNATLHNEDEIAR-----------KDIRIGDTVVVQRAGDVIPQIVEVVLDK 420

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R   A P+ FP  CP C S  +R+++ K  +     RCTG L C AQ +ERLKHF SR+A
Sbjct: 421 RPEGATPYVFPHECPACGSAALREIDEKGVE-DVVRRCTGSLVCPAQAIERLKHFASRNA 479

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +IEGLG +Q+++FF        +R  ++IFTL  R + S TK+EN  G+G+ SV NL+ 
Sbjct: 480 MDIEGLGDKQIEYFFTD----GLVRTASEIFTLAERDRASLTKLENKEGYGETSVRNLFA 535

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I+ RR + + RF+++LGIRHVG   AR LA+++  + +         A  ++    +  
Sbjct: 536 AIDARRTVPINRFLYALGIRHVGETNARRLARHFPDFASLRDTAREA-APGSEARERIES 594

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  +G ++A+A+ +F+  P N   ++ALL  VS       +N  S +  K +VFTG L++
Sbjct: 595 IEGIGGVVAEALHDFFAEPHNEREIDALLAHVSLEPMPTIENA-SPVAGKTVVFTGALER 653

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           + R +A+    + GA +S  +S+KTD+++ G   GSKL KA++LGV++++EE++
Sbjct: 654 LTREEAKAQAERFGAKISGSVSKKTDLVVAGPGAGSKLAKAKELGVEVISEEEW 707


>gi|152971289|ref|YP_001336398.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|166215815|sp|A6TC47|DNLJ_KLEP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|150956138|gb|ABR78168.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 671

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 246/713 (34%), Positives = 394/713 (55%), Gaps = 48/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R+   +    P+L     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  D   + +  E K
Sbjct: 58  PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDH--LTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   +T   +++YY +++  R  L +DIDG+V KVD  +
Sbjct: 236 PASHSARLLQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GD+V+++RAG+VIP+VV+++++ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA ++ + +   Q               L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEALEQA----------SIEELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
               F+    N   +  LL E            + + S    K +V TG+L ++ R  A+
Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671


>gi|113868039|ref|YP_726528.1| NAD-dependent DNA ligase [Ralstonia eutropha H16]
 gi|123133949|sp|Q0KA11|DNLJ_RALEH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|113526815|emb|CAJ93160.1| NAD-dependent DNA ligase [Ralstonia eutropha H16]
          Length = 709

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 256/721 (35%), Positives = 384/721 (53%), Gaps = 54/721 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P   L  E A K ++ L  E+  H+  YY    P I D+EYDAL     A+    P+L  
Sbjct: 15  PAGPLPPEAAAKRVAWLRDELDRHNYQYYVLDAPTIPDAEYDALFSELQALELEHPEL-- 72

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
            + P+ P  ++GGE   +   V H +P LSL   +  +D+  F  R  +   +       
Sbjct: 73  -QTPDSPTQRVGGEPLSAFDSVRHRVPMLSLNNGFADDDVLNFDRRCAQGLGRTAPAAGE 131

Query: 124 -------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176
                  +++ +  E K DG  +++RYE G+ V AA RGDG +GEDV+  +R I  IP  
Sbjct: 132 QDLFSAADAVEYACELKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTVNVRTIKAIPLK 191

Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRY 235
           L    P ++EVRGEV++ + DF  LN+     G K + NPRNAA+G LR+L+P     R 
Sbjct: 192 LRGQAPAVLEVRGEVFMYRGDFDKLNERQAEAGEKTFVNPRNAAAGSLRQLDPRITAKRP 251

Query: 236 LNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           L+FF +GLG+            ML     LG PV           G++ +Y ++   R  
Sbjct: 252 LSFFAYGLGELQGVDRPPTHSAMLDGFAALGLPVCKDRAVVKGAQGLLDFYRDIGQRRDA 311

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LPYDIDG+VYKV+  + Q++LG  +R+PR+ ++HKF  ++ +T + DI++Q+GRTG +TP
Sbjct: 312 LPYDIDGVVYKVNALAEQERLGFVSRAPRFALAHKFPAQEMTTIVEDIEVQVGRTGAITP 371

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG  +TNATLHNED I+            +D+ +GD V+V+RAG+VIP+VV
Sbjct: 372 VARLKPVFVGGVTVTNATLHNEDEIRR-----------KDVHIGDTVIVRRAGDVIPEVV 420

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
            ++   R  DA+ F  P+ CP+C S + +  +       A  RCTGGL C+AQ+ + L H
Sbjct: 421 AVVTERRPDDARAFVMPTACPVCGSHIEKLEDE------AIARCTGGLICAAQRKQALLH 474

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           F  R A +IEGLG + ++           +R PAD+F L         K+  +    D S
Sbjct: 475 FAQRRAMDIEGLGDKLVEQLVDQ----GIVRTPADLFKL------GVAKLAALERMADKS 524

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             NL  +I+  R  ++ RFIF+LGIRHVG   A+ LA+++                   D
Sbjct: 525 AANLVAAIDASRETTMNRFIFALGIRHVGEATAKDLARHFGKLDALMAA----------D 574

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLV 653
             +L+ V  VG ++AQ+I  F+  P N+  +E L       +         + +  K  V
Sbjct: 575 EAALLEVNDVGPVVAQSIAHFFAEPHNVEVIEQLRAAGVHWTESEPVAKAPAPLSGKTFV 634

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL  + R  A+E +   GA V+  +S+KTD ++ G   GSKL+KA+ LGV +++E  
Sbjct: 635 LTGTLPTMSREDAKELLEAAGAKVAGSVSKKTDYVVAGAEAGSKLDKAEALGVPVLDEAG 694

Query: 714 F 714
            
Sbjct: 695 M 695


>gi|253988889|ref|YP_003040245.1| NAD-dependent DNA ligase LigA [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780339|emb|CAQ83500.1| DNA ligase [Photorhabdus asymbiotica]
          Length = 672

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 241/714 (33%), Positives = 391/714 (54%), Gaps = 49/714 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++ +L + + +H+  Y+    P I D+EYD L +    +    P+L  S   + 
Sbjct: 1   MKSTAQQIENLRKTLRHHEYLYHVMDAPEISDAEYDRLMQELKTLEGQHPELITS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H IP LSL+ +++ E    F  R+      KD   +    E K
Sbjct: 58  PTQRVGAAPLAAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRL--KDTQDLVVCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE++++ +R I  +P  L     P  IEVRGEV+
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITSNVRTINAVPLRLIGENIPARIEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +N F  LN+E    G K +ANPRNAA+G LR+L+P     R L F  +G+G       
Sbjct: 176 MPQNGFEKLNEEARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLAFLCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               YE L + +  G PV++ VR     + ++ +Y  +++ RSTL +DIDG+V KV+   
Sbjct: 236 PASHYERLMQFKKWGLPVSDKVRVCTDSNQVIDFYRNIENQRSTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  AR+PRW  + KF  ++  T + DI+ Q+GRTG +TPVARLEPV + G  ++N
Sbjct: 296 LQETLGFVARAPRWATAFKFPAQEQMTIVRDIEFQVGRTGAITPVARLEPVQVSGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+++RAG+VIP+VV ++ + R  D+    F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIIRRAGDVIPQVVGVVEDRRPQDSDEVIF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P +CP+C + + +          A  RCTGGL C AQ+ E L+HFVSR A +++G+G++ 
Sbjct: 405 PEYCPVCGADIEKIEGE------AVARCTGGLVCGAQRKEALRHFVSRRAMDVDGMGEKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D     E     +  PAD+F L         K+  +   G  S  N+ D++ K +  + 
Sbjct: 459 IDQLVDKE----YVETPADLFRLTA------GKLTGLDRMGPKSAQNVVDALEKAKKTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA Y+                   D  +L  V  VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAYFGDLNKLRAA----------DEEALKEVQDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +V F+  P N   ++ L+  +  +         + + S    K +V TG+L ++ R +A
Sbjct: 559 HVVHFFNEPHNQKVIDDLIDNIGINWEPIAVTKAEKIDSPFAGKTIVLTGSLHQLSRDEA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ +  LGA V+  +S+KTD++I G+  GSKL KA +L + +++EE+ + LL +
Sbjct: 619 KDKLIALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELNIAVIDEEEMIRLLGE 672


>gi|153948204|ref|YP_001400300.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis IP
           31758]
 gi|170023674|ref|YP_001720179.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis YPIII]
 gi|190359300|sp|A7FGC2|DNLJ_YERP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781915|sp|B1JFZ0|DNLJ_YERPY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|152959699|gb|ABS47160.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis IP 31758]
 gi|169750208|gb|ACA67726.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis YPIII]
          Length = 670

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 244/712 (34%), Positives = 400/712 (56%), Gaps = 47/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD + ++   +    P+L  +   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTN---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R++     K    + F  E K
Sbjct: 58  PTQRVGAAPLDAFEQVEHEVPMLSLDNVFDEESYLAFDKRVHDRL--KTAEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+  V+       ++++Y +++  R+ L +DIDG+V KVD+  
Sbjct: 236 PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLV 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  D +  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PSQCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+F L         K+  +   G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFQLTA------GKLTGLDRMGPKSAQNLIAALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNLRAA----------DIETLKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +E L K VS    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +T LGA VS  +S+KT ++I G+  GSKL KAQ+LG+K+++E + + LL +
Sbjct: 619 RLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLLGE 670


>gi|320014458|gb|ADV98029.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 670

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 244/712 (34%), Positives = 400/712 (56%), Gaps = 47/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD + ++   +    P+L  +   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTN---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R++     K    + F  E K
Sbjct: 58  PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRL--KTAEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+  V+       ++++Y +++  R+ L +DIDG+V KVD+ +
Sbjct: 236 PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  D +  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PSQCPVCSSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+F L         K+  +   G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFQLTA------GKLTGLDRMGPKSAQNLIAALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNLRAA----------DIETLKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +E L K VS    +    +   S    K +V TG+L  + R +A++
Sbjct: 559 HVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEESDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +T LGA VS  +S+KT ++I G+  GSKL KAQ+LG+K+++E + + LL +
Sbjct: 619 RLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLLGE 670


>gi|262276434|ref|ZP_06054243.1| DNA ligase [Grimontia hollisae CIP 101886]
 gi|262220242|gb|EEY71558.1| DNA ligase [Grimontia hollisae CIP 101886]
          Length = 670

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 261/713 (36%), Positives = 412/713 (57%), Gaps = 47/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +  +++L SL+ +++YH   YY   KP + D+EYD + +   AI    P+L  +   
Sbjct: 1   MTTD-IQQKLQSLKTQLNYHGHLYYVEDKPELPDAEYDRMMQELLAIEAKHPELVTA--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG    +  +V H IP LSL+  ++  +L  F  R+       +     F+ E
Sbjct: 57  DSPSQRVGGAPLGAFEQVRHEIPMLSLDNAFDDGELEAFEKRLRDRLNTTER--FVFSCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  +++ YE G  V AA RGDG  GE+++  +R I  +P +L     P  +EVRGE
Sbjct: 115 PKLDGLAVSLMYENGVLVQAATRGDGTVGENITHNVRTIRNVPLLLQGEGWPVRLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V++ K+ F ALN++ I  G K +ANPRNAA+G LR+L+P    TR L F+ + +G  SE 
Sbjct: 175 VFMPKDGFEALNEKNIKKGEKTFANPRNAAAGSLRQLDPKITATRPLRFYAYSVGVMSEA 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           F       L++++  G P++  V++ +    + +YY ++ + R+ LPY+IDG+V KVD  
Sbjct: 235 FGDSHVGRLEQLKQWGIPLSPEVKKVDGLENVKAYYQDIAARRNDLPYEIDGVVIKVDNI 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++
Sbjct: 295 DTQERLGFVARAPRWAIAYKFPAQEEITVLQDVEFQVGRTGAITPVAKLEPVFVGGVTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I  L            +++GD V+++RAG+VIP++V ++ + R  DA+   
Sbjct: 355 NATLHNADEIARL-----------GVKIGDTVIIRRAGDVIPQIVSVVESRRPDDAKEVV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP+CQS+V R          A  RCTGGL C AQ+ E +KHF SR A +I+GLG +
Sbjct: 404 FPHECPVCQSQVERVEGE------AVARCTGGLICRAQRKEAIKHFSSRKALDIDGLGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   + E     I+ PAD+F L   Q         +   G  S  NL D+++K +  +
Sbjct: 458 IVEQLIEKE----LIKTPADLFKLTAGQV------TMLDRMGPKSAQNLVDALSKAKETT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI+SLGIR VG   A +LA ++ +++   +               LI V  VG I+A
Sbjct: 508 LPRFIYSLGIREVGEATAANLANHFFTFEAIREATE----------EQLIEVQDVGVIVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           + +V F+    N   ++ALL      P+I + ++N    +  K +V TGTL ++ R+ A+
Sbjct: 558 KHVVNFFNEEHNKTVIDALLACGITWPAIEQPDENKPQPLAGKTVVLTGTLSQMSRNDAK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +  LGA V+  +S KTD++I G+  GSKL KAQQLG++I++E+  + LL +
Sbjct: 618 AALQALGAKVTGSVSAKTDLLIAGEAAGSKLTKAQQLGIEIVDEDGMMRLLSR 670


>gi|292491548|ref|YP_003526987.1| DNA ligase, NAD-dependent [Nitrosococcus halophilus Nc4]
 gi|291580143|gb|ADE14600.1| DNA ligase, NAD-dependent [Nitrosococcus halophilus Nc4]
          Length = 675

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 257/714 (35%), Positives = 394/714 (55%), Gaps = 48/714 (6%)

Query: 12  LSI-EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ++   QAR+ + +L + I+ ++  YY    P++ DSEYD L R    +   +P+L     
Sbjct: 1   MTATAQARERVETLRKLINDYNYNYYVLDSPVVPDSEYDRLMRELQNLEAQYPELVV--- 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+ P  ++G E   +L +V H IP LSL   ++ E+L  F  R+      +    + +  
Sbjct: 58  PDSPTQRVGAEPLKALGEVKHEIPMLSLNNAFSEEELADFHRRVKERLGIE---QVEYAA 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189
           EPK+DG  +++ Y++G  V  A RGDG +GEDV+  +R IPT+   L  + IP ++EVRG
Sbjct: 115 EPKLDGLAVSLLYQEGILVQGATRGDGVTGEDVTHNVRTIPTVSLHLRGDKIPSLLEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSE 248
           EVY+ K  F  LN E +A G K + NPRNAA+G LR+L+P          F +G+GK  +
Sbjct: 175 EVYMPKEGFERLNREHLAKGEKTFVNPRNAAAGSLRQLDPRIAASRPLAIFCYGVGKVEQ 234

Query: 249 IF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               +   E+L +++  G      V       G   YY  +   R  LPY+IDG+V+KVD
Sbjct: 235 GTLPQRHSEVLARLKQWGLRTPPHVEVVAGLAGCQEYYQRLLERRDGLPYEIDGVVFKVD 294

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            F  ++ LG  AR+PRW I++KF  ++  T++LDI++Q+GRTG LTPVARL+PV +GG  
Sbjct: 295 RFDQRQALGFVARAPRWAIAYKFPAQEELTQILDIEVQVGRTGALTPVARLQPVFVGGVT 354

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHNED I+            +D+R+GD V V+RAG+VIP+VV +I++ R PDA+ 
Sbjct: 355 VSNATLHNEDEIRR-----------KDVRIGDTVYVRRAGDVIPEVVKVILDHRPPDARF 403

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P+ CPIC S V++D         A  RC+GGL C AQ+ E +KHF SR A +I GLG
Sbjct: 404 FQMPTQCPICGSEVIKDEG------GAIARCSGGLYCPAQRKEAIKHFASRRAMDINGLG 457

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +D   + E     +   AD++ L   Q         +   G  S  NL  +I   ++
Sbjct: 458 DKLVDQLIERE----LVEDVADLYHLTAEQLAG------LERMGQKSAANLMHAIEASKH 507

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RF+++LGIR VG   A++LA+ + S +                   L  V  +G +
Sbjct: 508 TTLPRFLYALGIREVGEATAQALAEEFNSLEALEGASE----------ERLQEVTDIGPV 557

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           +A  I  F++ P N   ++ L +          +K +   +  K  V TGTL+ + R +A
Sbjct: 558 VATHIAAFFRQPHNRQVIQRLREAGVCWPEKEGKKPIPQPLSGKTFVLTGTLESMTREQA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +E +  LG  V++ +S  TD ++VG NPGSKL KA+ L + +++E  F  LL +
Sbjct: 618 KERLQALGGKVTSSVSSNTDYLVVGTNPGSKLTKAKDLHITLLDEGNFRNLLDE 671


>gi|330013648|ref|ZP_08307732.1| DNA ligase [Klebsiella sp. MS 92-3]
 gi|328533421|gb|EGF60158.1| DNA ligase [Klebsiella sp. MS 92-3]
          Length = 671

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 245/713 (34%), Positives = 393/713 (55%), Gaps = 48/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R+   +    P+L     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  D   + +  E K
Sbjct: 58  PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDH--LTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   +T   +++YY +++  R  L +DIDG+V KVD   
Sbjct: 236 PASHSARLLQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GD+V+++RAG+VIP+VV+++++ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         ++  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFRLTA------GELTGLDRMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA ++ + +   Q               L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEALEQA----------SIEELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
               F+    N   +  LL E            + + S    K +V TG+L ++ R  A+
Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671


>gi|121533514|ref|ZP_01665342.1| DNA ligase, NAD-dependent [Thermosinus carboxydivorans Nor1]
 gi|121308073|gb|EAX48987.1| DNA ligase, NAD-dependent [Thermosinus carboxydivorans Nor1]
          Length = 673

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 256/709 (36%), Positives = 381/709 (53%), Gaps = 46/709 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++EQA +E   L ++I YH+  YY    P I D+E+DAL RR  AI  A+P L     P+
Sbjct: 8   TLEQAAREAEQLRRQIHYHNHRYYVLDAPEISDAEFDALMRRLIAIEEAYPSLI---TPD 64

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG       +  H  P LSL   ++ EDLR F  R+         +   + +E 
Sbjct: 65  SPTQRVGGAPAEGFDRTLHLTPMLSLANAFSAEDLRAFDNRVRSGLGV---DKAEYVVEL 121

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEV 191
           KIDG  + + YE G+ V  A RGDG  GEDV+A +R I ++P V    + P ++EVRGEV
Sbjct: 122 KIDGLAVNLVYEAGRLVRGATRGDGQYGEDVTANVRTIRSVPLVLPVNDPPALLEVRGEV 181

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ + +F  LN+E  A G   +ANPRNAA+G LR+L+P     R L+ FV+  G+   + 
Sbjct: 182 YMPRREFDRLNEERQAAGEALFANPRNAAAGSLRQLDPRVTAQRALDIFVYATGRREGLN 241

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L+ +  LGF VN   R   +   ++ Y       R  LPYDIDGLV K++  +
Sbjct: 242 METHAQTLETLAALGFKVNPHYRVFGSIEEVIDYCYSWNERRVDLPYDIDGLVIKLNSLA 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  A+ PRW I+ KF  +QA+T + DI +++GRTG+LTP A+L PV + G+ ++ 
Sbjct: 302 GQARLGATAKDPRWAIAFKFPAEQATTIVEDIFVRVGRTGVLTPTAQLRPVRLAGSTVSR 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYI+            +DIR+GD V++ +AGEVIP+VV ++ + R+   +PF  
Sbjct: 362 ATLHNEDYIR-----------DKDIRIGDTVIIHKAGEVIPEVVAVVASRRNGSERPFVM 410

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S VVR+         AAH+C    AC A   E L HFVSRDA NIEGLG   
Sbjct: 411 PDRCPECGSPVVREPGE------AAHKCVNS-ACPAMLREGLIHFVSRDAMNIEGLGPAV 463

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +         A  +R  AD++ L+    T       +   G  S  NL  +I   +   L
Sbjct: 464 IGSLLD----AGLVRDAADLYALRFDDLTK------LDRMGPKSAQNLLQAIEASKEAGL 513

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R +F+LGIR VGA+ A +LA+++ S     +               L+ +  +G  IA+
Sbjct: 514 ARLLFALGIRFVGAKAAGTLARHFGSIHALERAT----------VEELMALEEIGPKIAE 563

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++  ++ +P+NI  V  L                  +     V TGTL  + R +A E +
Sbjct: 564 SVANYFADPQNIALVRKLEAAGVKVTEERPAAKRQTLAGITFVLTGTLATMTRAEATELI 623

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G  VS+ +S+KT+ ++ G+  GSKL+KA++LG+ ++ E +F  LL+
Sbjct: 624 ESRGGKVSSSVSKKTNYVVAGEEAGSKLDKARELGIPVLTEGEFKKLLE 672


>gi|284006788|emb|CBA72055.1| DNA ligase [Arsenophonus nasoniae]
          Length = 670

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 249/712 (34%), Positives = 402/712 (56%), Gaps = 46/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ +  L+ L+Q++ +H+  Y+    P I D+EYD L +    +    P+   +   + 
Sbjct: 1   MKEQQNYLARLKQQLRHHEYLYHVLDTPEIPDAEYDRLMQELKKLEAEHPEWITA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H IP LSL+ +++ E    F  R++     K+++ + F  E K
Sbjct: 58  PTQRVGAAPLTAFEQVRHEIPMLSLDNVFDEESYLAFDKRVHDRL--KNNSQLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE+G+ V AA RGDG +GE+++A IR I  IP  L+ +  PE IE+RGEV+
Sbjct: 116 LDGLAVSLLYEQGELVQAATRGDGTTGENITANIRTIRAIPLRLTGDNIPERIEIRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF- 250
           ++   F  LN+E      K +ANPRNAA+G LR+L+P     R L FF +G G  +    
Sbjct: 176 MTHRGFEKLNEEARRNDGKIFANPRNAAAGSLRQLDPRITAKRPLAFFCYGFGLLAGGQL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y+ L + +  G PV++ +        +++YY++++  R  L +DIDG+V KVD   
Sbjct: 236 PASHYQCLMQFKKWGLPVSDKIALCQNSQQVLAYYHQIEHARLGLGFDIDGVVIKVDPLQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW  + KF  ++  T L D++ Q+GRTG +TPVARL PV + G +++N
Sbjct: 296 LQEELGFVARAPRWATAFKFPAQEQITLLHDVEFQVGRTGAITPVARLAPVLVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+++RAG+VIP++V+++ + R  D++   F
Sbjct: 356 ATLHNADEIERL-----------GVRIGDTVVIRRAGDVIPQIVNVLTDRRPIDSREIRF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R          A  RCTGGL C+AQ+   LKHFVSR A +I+G+G + 
Sbjct: 405 PIHCPVCGSAIERIEGE------AVIRCTGGLICAAQRKGALKHFVSRRAMDIDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D     E     +   AD++ L      +   +  +   G  S  NL ++++K +  +L
Sbjct: 459 IDQLVAKE----YVTTAADLYRL------NLDILARLERMGPKSAQNLINALDKSKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI++LGIR VG   A +LA +Y +  +              D  SL +V  VG+I+A+
Sbjct: 509 ARFIYALGIREVGEATASNLAAHYTTLTSLMAA----------DIESLKKVQDVGEIVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            IV F+    N   V  L+ E+  S      K   S    K +V TGTL ++ R + ++ 
Sbjct: 559 HIVNFFHEQHNRDVVNQLVNEIGISWPRMPAKKTDSPFTGKTIVLTGTLNRLTRDELKDK 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +  LGA V+  +S+KTD++I G+  GSKL KA +LG+KI+NE++ + LL+ +
Sbjct: 619 LILLGAKVTGSVSKKTDLVIAGEAAGSKLTKANELGIKIINEDELIALLEDH 670


>gi|300897228|ref|ZP_07115672.1| DNA ligase, NAD-dependent [Escherichia coli MS 198-1]
 gi|300358986|gb|EFJ74856.1| DNA ligase, NAD-dependent [Escherichia coli MS 198-1]
          Length = 671

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K +  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  AR+PRW ++ KF  ++  T + D++ ++GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQERLGFVARAPRWAVAFKFPAQEQMTFVRDVEFKVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|260598800|ref|YP_003211371.1| NAD-dependent DNA ligase LigA [Cronobacter turicensis z3032]
 gi|260217977|emb|CBA32625.1| DNA ligase [Cronobacter turicensis z3032]
          Length = 672

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 249/714 (34%), Positives = 397/714 (55%), Gaps = 49/714 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R   A+  A P+L     P+ 
Sbjct: 1   MESIEEKLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++      F  R+      K+ +++ +  E K
Sbjct: 58  PTQRVGAAPLTAFSQVRHEVPMLSLDNVFDEASFLAFNKRVQDRL--KNTDALVYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GED++  +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQTGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     LQ+ +  G PV++ +R   T   ++++Y ++++ R TL +DIDG+V KVD   
Sbjct: 236 PRSHMARLQQFKAWGLPVSDRIRLVKTPEDVLAFYRQVEADRPTLGFDIDGVVIKVDSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQLTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTQCPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  NL  ++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNLVTALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA ++ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEALINA----------SIDDLQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F++   N   +  L +EV            + + S    K +V TG+L ++ R  A
Sbjct: 559 HVFNFFEEESNRAVIRDLTEEVGIHWPAPQVVKAEEIDSPFAGKTVVLTGSLSQMSRDDA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL +
Sbjct: 619 KARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGE 672


>gi|320173862|gb|EFW49042.1| DNA ligase [Shigella dysenteriae CDC 74-1112]
          Length = 671

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +     +L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHLELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLKALEAA----------SIEELQKVPDVGIVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669


>gi|238790828|ref|ZP_04634584.1| DNA ligase [Yersinia frederiksenii ATCC 33641]
 gi|238721075|gb|EEQ12759.1| DNA ligase [Yersinia frederiksenii ATCC 33641]
          Length = 670

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 245/712 (34%), Positives = 403/712 (56%), Gaps = 47/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++   +    P+L  +   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITN---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R++     K    + F  E K
Sbjct: 58  PTQRVGAAPLDAFDQVKHEVPMLSLDNVFDEESYLAFDKRVHDRL--KTAEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE+G+ V AA RGDG +GE+++  +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEEGELVRAATRGDGTTGENITVNVRTIRAIPLRLHGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+N V+       ++++Y +++  R++L +DIDG+V KVD   
Sbjct: 236 PRSHIQRLMQFKAWGLPVSNRVKLCTGSDQVIAFYRQVEQDRASLGFDIDGVVIKVDSLD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++++R  DA+  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PDHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+FTL         K+  +   G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFTLTA------GKLTGLDRMGPKSAQNLIVALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNLRAA----------DIEALKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +E L K +S    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVLNFLSEEHNQKVIETLEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL +
Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLLGE 670


>gi|328542977|ref|YP_004303086.1| DNA ligase, NAD(+)-dependent [polymorphum gilvum SL003B-26A1]
 gi|326412723|gb|ADZ69786.1| DNA ligase, NAD(+)-dependent [Polymorphum gilvum SL003B-26A1]
          Length = 721

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 321/722 (44%), Positives = 464/722 (64%), Gaps = 18/722 (2%)

Query: 12  LSIEQARKELSSLEQE------------ISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59
           ++ + A   + SL ++            I+ HD  Y+    P + D+EYDAL+RR  AI 
Sbjct: 1   MNEKSAAAAVESLSRQEAEAELARLAAEIAAHDQRYFAEDAPTVSDAEYDALRRRNAAIE 60

Query: 60  HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
             FPDL R    + P  +IG   +    KVTH+IP LSL+  ++ +D+R F+ R+ RF +
Sbjct: 61  ERFPDLVRE---DSPSARIGAAPSEGFGKVTHAIPMLSLDNAFSDDDVRDFVARVRRFLR 117

Query: 120 KKDD-NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
                 ++  T EPKIDG  +++RYE G+ V AA RGDG  GE+V+A  R I  IP  L 
Sbjct: 118 LDPLMGALGVTAEPKIDGLSLSLRYEGGRLVSAATRGDGTVGENVTANARTIADIPHRLP 177

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237
             +PE++EVRGEVY++  DF ALN  M A G K +ANPRNAA+G LR+LNP     R L 
Sbjct: 178 AGVPEVVEVRGEVYMAHADFAALNARMAANGGKVFANPRNAAAGSLRQLNPDITAARPLK 237

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           FF +  G+ SE+    Q EM+  +   GFPVN  +    +   ++  Y+ ++  R+TL Y
Sbjct: 238 FFAYAWGEMSEVPRATQMEMVSLIGAWGFPVNPRMVLCRSVEELIDVYHAIEEERATLGY 297

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+VYKVD   LQ +LG  +RSPRW I+HKF  ++A T L DI+IQ+GRTG LTPVA+
Sbjct: 298 DIDGVVYKVDRLDLQARLGFVSRSPRWAIAHKFPAEKAFTILRDIEIQVGRTGALTPVAK 357

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV +GG +++NATLHNEDYI+G+   G+ +RGG+D+R+GD V ++RAG+VIP+V+D+ 
Sbjct: 358 LEPVTVGGVVVSNATLHNEDYIRGIGQDGEPIRGGKDLRIGDTVQIQRAGDVIPQVIDVD 417

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + +R  DA PF+FP+ CP+C S  VR++N KTG+  A  RCTGGL C+AQ  E+LKHFVS
Sbjct: 418 LAKRPADAVPFAFPTVCPVCGSHAVREINAKTGRPDAVRRCTGGLVCAAQAKEKLKHFVS 477

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVT 536
           R+AF+IEGLG +Q++FF+        IR PADIFTL+ R   S   K++N  G+G+ S  
Sbjct: 478 RNAFDIEGLGDKQVEFFYDLPPEEGGIRTPADIFTLEARDAASPIRKLKNRDGWGETSAR 537

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL+ +I+ RR + L RFIF+LGIRHVG   A+ LA+ Y S+  FA  +     H +D W 
Sbjct: 538 NLFAAIDARRRVDLNRFIFALGIRHVGEGNAKLLARAYGSWDAFAAAMRAAADHGSDAWA 597

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            L  +  VG+++A+A+V+F+  P N  A++ALL EV+P          S +  K +VFTG
Sbjct: 598 ELNAIDGVGEVVAEAVVQFFAEPHNREALDALLAEVTPLDAEKVAAEGSPVAGKTVVFTG 657

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L+++ R +A+    +LGA V+  +S+KT +++ G   GSKL+ AQ+L ++++ E+ +  
Sbjct: 658 ALERMTRDEAKAMAERLGAKVAGSVSKKTSLVVAGPGAGSKLKTAQELDIEVITEDDWFD 717

Query: 717 LL 718
           L+
Sbjct: 718 LV 719


>gi|239825842|ref|YP_002948466.1| NAD-dependent DNA ligase LigA [Geobacillus sp. WCH70]
 gi|239806135|gb|ACS23200.1| DNA ligase, NAD-dependent [Geobacillus sp. WCH70]
          Length = 670

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 250/717 (34%), Positives = 389/717 (54%), Gaps = 53/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A K +  L + ++ ++  YY   +P + D+EYD L +   A+   +PDL      
Sbjct: 1   MDRQAAMKRIEELRELLNKYNYEYYVLDRPSVPDAEYDRLMQELIALEEQYPDLK---TK 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+   +  KV H  P LSL   +N  DLR F  R+     ++  + + +  E
Sbjct: 58  DSPSQRVGGQALDAFQKVEHRTPMLSLANAFNEGDLRDFDRRVR----QEVGDDVAYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L+  +   +E RGE 
Sbjct: 114 LKIDGLAVSVRYEDGYFVQGATRGDGVTGEDITENLKTIRSLPLRLNEPV--TLEARGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F  LN++    G + +ANPRNAA+G LR+L+P    +R+L+ FV+ L    E+ 
Sbjct: 172 YMPKASFERLNEQRRNRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYSLANAEELG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L  ++ LGF  N   R+      ++ + NE    RS LPY+IDG+V KVD F 
Sbjct: 232 IDSHSAALDYLQQLGFKTNPERRRCANIDEVIQFVNEWHEKRSHLPYEIDGIVVKVDSFE 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            QKQLG  A+SPRW +++KF  ++  T+L+ I++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 QQKQLGATAKSPRWAVAYKFPAEEVVTKLIGIELSVGRTGVVTPTAILEPVRVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED+I+            +DIR+GD V++K+AG++IP+VV+++ + R  +  PF  
Sbjct: 352 ATLHNEDFIR-----------QKDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR A NIEGLG++ 
Sbjct: 401 PTHCPECASELVRFDGE------VALRCINPK-CPAQIREGLIHFVSRQAMNIEGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       I   AD++ L + Q         +   G+ S TNL  +I   +  SL
Sbjct: 454 ISQLFRE----GLIHDVADLYRLTKEQLI------RLERMGEKSATNLLRAIEASKQNSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ A+ LA+++ +                     L+ +  +G+ +A 
Sbjct: 504 ERLLFGLGIRHVGAKAAKVLAEHFGTMDRLQTATK----------EELMAIHEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-----VSSEIENKKLVFTGTLQKIQRHK 665
           +IV ++  P     +  L         +  K      V S    K +V TG L+ + R++
Sbjct: 554 SIVTYFAKPEVKELLNELRAYGVNMEYKGPKTPKPGDVHSYFAGKTVVLTGKLESLSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+E + QLG  V+  +S+ TD++I G + GSKL KAQQL ++I +EE+FL  ++Q  
Sbjct: 614 AKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLNIEIWDEERFLQEIEQNK 670


>gi|319407493|emb|CBI81141.1| DNA ligase [Bartonella sp. 1-1C]
          Length = 725

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 327/720 (45%), Positives = 463/720 (64%), Gaps = 16/720 (2%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ L+  +A  EL  L +EI+ HD  Y++  +P I D+EYDAL RR + I   FP+L R+
Sbjct: 6   IKNLTALEAASELEWLAKEIARHDVLYHRDDQPEISDAEYDALCRRNEEIEALFPELIRA 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P +KIG  ++    K  H+ P LSL+  +N ED+ +FI RI RF +  +   I  
Sbjct: 66  ---DSPSSKIGAPISEKFEKSIHAQPMLSLDNAFNFEDVSEFIERIRRFLRLPETQIIEM 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG  +++RYE GK V A  RG+G  GE+V+   R I  IP++L  N P+IIEVR
Sbjct: 123 TAEPKIDGLSLSLRYEAGKLVRAITRGNGSIGENVTTNARTIADIPQILQANFPDIIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247
           GEVY+ + DF  LN      G+  +ANPRNAA+G LR+L+     +R L FF +  G+ S
Sbjct: 183 GEVYMGQKDFQLLNINQQKEGKLVFANPRNAAAGSLRQLDSRITASRNLKFFAYAWGEVS 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ A+ Q  M++K++  GF +N   +       ++SYY+ ++  R +L YDIDG+VYKV+
Sbjct: 243 EMPAESQIGMMKKLKEYGFIINPLTKVFEKVEDLISYYHSIEECRQSLDYDIDGIVYKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQ +LG  ARSPRW I+HKF  ++A   L DIDIQ+GRTG LTPVARL P+ +GG +
Sbjct: 303 DLMLQTRLGFVARSPRWAIAHKFPAEKAIAFLEDIDIQVGRTGALTPVARLTPITVGGVV 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNA+LHNEDYIKG+   G+ +R GRDIRVGD V+++RAG+VIP++VD++V +R  D   
Sbjct: 363 VTNASLHNEDYIKGIGHKGEPIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRPKDTPA 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP+C S  VR+            RCTGGL CSAQ +ER+ HFVSR+AF+IEG G
Sbjct: 423 FIFPHVCPVCGSHAVREEGET------VRRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++FFF ++D    IR P DIFTLQRRQ+ S  ++EN+ GFG VSV  LY++IN RR 
Sbjct: 477 RKQVEFFFHAQDKMLCIRSPVDIFTLQRRQENSLKRLENMEGFGVVSVRKLYNAINARRE 536

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSLIRV 601
           ISL RF+F+LGIRH+G   A+ LA+ Y +Y  F     + I         N+ W+ L  +
Sbjct: 537 ISLSRFLFALGIRHIGEVKAQRLARAYQNYTAFETAAMSAIMPPDKNNEGNEIWVELTNI 596

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G  + +AI++FYQ   N   + ALLKEV+P          S I  K + FTGTL+ +
Sbjct: 597 EGIGFRVGKAIIDFYQEVHNRDILSALLKEVTPLHEAPVTIDYSPIVGKIITFTGTLEHM 656

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R +A+    +LGA  S  +S+KTD+++ G   GSKL KAQQLG+++++E+ +L L+  +
Sbjct: 657 SRDEAKSLAERLGAKTSNSISKKTDLLVAGFGAGSKLTKAQQLGIEVLDEKNWLKLIDGH 716


>gi|268593162|ref|ZP_06127383.1| DNA ligase, NAD-dependent [Providencia rettgeri DSM 1131]
 gi|291311208|gb|EFE51661.1| DNA ligase, NAD-dependent [Providencia rettgeri DSM 1131]
          Length = 671

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 244/709 (34%), Positives = 400/709 (56%), Gaps = 49/709 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E+  L++++ +H+  Y+    P I D EYD L +R   I    P+L  S   + P  +
Sbjct: 4   KQEIDELKKQLRHHEYQYHVLDAPEIPDVEYDKLMQRLKEIEAQHPELVTS---DSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G     +   V H IP LSL+ +++ E    F  R+      K+   + F  E K+DG 
Sbjct: 61  VGAAPLAAFDTVRHEIPMLSLDNVFDEESYLAFDKRVRDRL--KNHQELTFCCELKLDGL 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKN 196
            +++ YE G+ V AA RGDG  GE+++A +R I  IP  L  +  P+ +E+RGEV++ + 
Sbjct: 119 AVSLLYENGELVQAATRGDGTVGENITANVRTIRAIPLRLRGSNIPDRVEIRGEVFMPQK 178

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKGQ 254
            F ALN++      K +ANPRNAA+G LR+L+P     R L F+ +G+G           
Sbjct: 179 GFEALNEQARKTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGGSLPDTH 238

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           Y+ L + +  G PV++ V+       ++ +Y+E++ +R  L +DIDG+V KV+  ++Q++
Sbjct: 239 YDRLMQFKAWGLPVSDYVQLRVGHQAVLDFYHEIEQVRPDLGFDIDGVVIKVNSIAIQEE 298

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW  + KF  ++  T L D++ Q+GRTG +TPVARLEPV + G +++NATLH
Sbjct: 299 LGFVSRAPRWATAFKFPAQEQVTLLKDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLH 358

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            + +GD V+++RAG+VIP++V ++V++R  D++   FP+ C
Sbjct: 359 NADEIERL-----------GVHIGDTVIIRRAGDVIPQIVSVVVDKRPTDSREIVFPTHC 407

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S + R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + +D  
Sbjct: 408 PVCGSDIERVEGE------AVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQL 461

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     ++ PAD++ L      S   +  +   G  S  NL D++NK +  +L RFI
Sbjct: 462 VEKE----YVKTPADLYQL------SAGILTGLDRMGPKSAQNLVDALNKSKQTTLARFI 511

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR VG   A +LA +Y + +               D  SL  V  +G ++A+ +V 
Sbjct: 512 YALGIREVGEATAANLAAHYTTLEAVMTA----------DEESLKTVQDIGHVVAKHVVN 561

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           F++ P N   +E LL + +      +      + S    K +V TG++  + R +A++ +
Sbjct: 562 FFREPHNQAVIEDLLTKANIHWPEVKVVNSAEIDSPFAGKTVVLTGSMSVLTRDEAKDKL 621

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             LGA VS  +S+KTD++I G+  GSKL KA +LG+++++E + + LL 
Sbjct: 622 VALGAKVSGSVSKKTDLVIAGEAAGSKLAKANELGIRVIDENELVRLLN 670


>gi|302390293|ref|YP_003826114.1| DNA ligase, NAD-dependent [Thermosediminibacter oceani DSM 16646]
 gi|302200921|gb|ADL08491.1| DNA ligase, NAD-dependent [Thermosediminibacter oceani DSM 16646]
          Length = 672

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 250/716 (34%), Positives = 384/716 (53%), Gaps = 48/716 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   +A   +  L + I+YH+  YY Y  P+I D+EYD L R+ + +   FP+L     P
Sbjct: 1   MDRSEAEARIKELRELINYHNRQYYVYDNPVISDAEYDKLMRQLEKLEKQFPELI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE      +V H +P +SL   ++  +L+ F  R+           + + +E
Sbjct: 58  DSPSQRVGGEPLPYFTQVVHRVPMMSLANAFDSGELKDFHRRVTEAVGS----EVQYVVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVR 188
           PKIDG  ++I YE G F  AA RGDG  GEDV+  ++ I ++P          P ++EVR
Sbjct: 114 PKIDGLAVSITYENGIFKTAATRGDGEVGEDVTQNVKTIKSVPLSLDFPPDKRPAVLEVR 173

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+ K DF  LN+E    G   +ANPRNAA+G LR+L+P     R L  +++GLG   
Sbjct: 174 GEVYLPKEDFRKLNEEREEQGLPLFANPRNAAAGSLRQLDPKVTAKRPLAVYIYGLGYAE 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            I  +  YE+LQ  + +G  VN  V   + F  ++ Y       R  LPY+IDG+V KV+
Sbjct: 234 GIEFETHYEVLQFFKRIGLRVNPHVVLFDRFQDVIDYCMSWNEKRHDLPYEIDGMVIKVN 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               Q  LG  A+SPRW I++KF  +Q  T + DI +++GRTG+LTP A LEPV + G+ 
Sbjct: 294 SLKQQGILGATAKSPRWAIAYKFPAEQKKTVIKDIIVRVGRTGVLTPTAILEPVRVAGST 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNEDYI+            +DI++GD V++ +AG+VIP+VV+++  +R    + 
Sbjct: 354 VSKATLHNEDYIR-----------EKDIKIGDTVIIHKAGDVIPEVVEVVKEKRTGKERD 402

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP C S  VR          AA+RCT    C AQ    ++HF SRDA +I GLG
Sbjct: 403 FEMPHRCPECGSEAVRLPGE------AAYRCTNSTGCPAQIRRSIEHFASRDAMDIRGLG 456

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
              +            I+  AD++ L+R           +   G+ S  NL  +I + + 
Sbjct: 457 SAIVSLLISQ----GLIKDAADLYYLKREDLV------PLERMGEKSAANLLAAIEESKK 506

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L+R I++LGI  VG+  A  LA+ + S  +  +            +  LI+VP +GD 
Sbjct: 507 RPLDRLIYALGIPFVGSRTASLLAEAFSSIDDLQKA----------KYEDLIKVPEIGDK 556

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IAQ+I+ F++  +    +  L         + +      ++    V TGTL+K  R +A 
Sbjct: 557 IAQSILAFFRQEQTNDLISRLRAAGVNMEAQKKAEGPRPLDGLTFVLTGTLEKYTRQQAT 616

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           E + +LG  V+  +S+KTD ++VG +PGSK E A +LG+KI+NE +F  L++++  
Sbjct: 617 ELIEKLGGRVTGSVSKKTDYVVVGKDPGSKYENALKLGIKILNEGEFEELIEKWKA 672


>gi|209963935|ref|YP_002296850.1| DNA ligase, NAD-dependent [Rhodospirillum centenum SW]
 gi|254781401|sp|B6IRF1|DNLJ_RHOCS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|209957401|gb|ACI98037.1| DNA ligase, NAD-dependent [Rhodospirillum centenum SW]
          Length = 719

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 302/738 (40%), Positives = 433/738 (58%), Gaps = 40/738 (5%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           +   + IP+E L+++QA  E ++L +EI++H   YY    P I DS YDAL+ R   +  
Sbjct: 4   LSDTRHIPVETLTLDQAAAEHAALVREIAHHRALYYGKDAPEIADSAYDALEHRLAGLEA 63

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP+L     P+ P   +G   +    KV H +P LSL+  +  ED+  F+ +I RF   
Sbjct: 64  RFPELV---TPDSPTQTVGAAPSAGFGKVRHRVPMLSLDNAFTAEDVDGFVEQIARFLNL 120

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           K+ + + F  EPKIDG  +++RYE G    AA RGDG  GEDV+A +R I  IP  L   
Sbjct: 121 KEVDGLEFVAEPKIDGLSLSLRYENGALAQAATRGDGAEGEDVTANVRTIREIPDRLPAG 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P ++EVRGEVY+ + +F ALN      G K +ANPRNAA+G LR+L+P+    R L FF
Sbjct: 181 APSVLEVRGEVYMVREEFFALNRRQAEAGEKVFANPRNAAAGSLRQLDPSVTAKRPLCFF 240

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G  SE     Q+E LQ+++ LGF V    R   +   ++ YY  + + R+ LP+DI
Sbjct: 241 AYSWGDLSEPLGATQWEALQRLKALGFRVPAQSRLCRSKAELLDYYAGIGAGRAALPFDI 300

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKV+   LQ++LG R R+PRW  +HKF  ++A T L  I IQ+GRTG LTPVA LE
Sbjct: 301 DGVVYKVNRLDLQERLGFRTRTPRWATAHKFPAERAQTLLRAITIQVGRTGALTPVAELE 360

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG +++ ATLHN D I             +DIRVGD V+V+RAG+VIP+VV+++  
Sbjct: 361 PVTVGGVVVSRATLHNADEIAR-----------KDIRVGDTVVVQRAGDVIPQVVEVVTE 409

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R  D+ PF FP  CP C S  VR+ +       A  RCTGGL C AQ +ERL+HFVSR+
Sbjct: 410 RRPADSAPFVFPDHCPECGSAAVREED------GAVSRCTGGLVCPAQAVERLRHFVSRN 463

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+IEGLG +++  F+  +     IR PADIFTL+RR+     ++  + GFG  SV NL+
Sbjct: 464 AFDIEGLGIERIQLFYDQDR----IRSPADIFTLERREAQRLDRLVAMTGFGRKSVENLF 519

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN------- 592
            +I+ RR I L+RFIF+LGIR VG   A+ LA+ Y S   + + +    A  +       
Sbjct: 520 RAIDARRRIPLDRFIFALGIRQVGEATAKLLARTYRSVGPWTERMAAAAAERSANPDEAK 579

Query: 593 ------DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG--RHEKNVS 644
                 + +  L  +  +G  +A  I  F+  P N  A++ALLKE+          +   
Sbjct: 580 KPELVGEAYAELCAIEQIGMSVADDICAFFAEPHNRDALDALLKELEAVEDHVPPPRADG 639

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
           S +  K +VFTGTL+ + R +A+     LGA V+  +S KTD ++VG + GSK  KA++L
Sbjct: 640 SPVAGKTVVFTGTLETMGRSEAKARAEALGAKVAGSVSGKTDYVVVGADAGSKAAKAREL 699

Query: 705 GVKIMNEEQFLFLLQQYN 722
           G+ I+ E+++L L+ Q  
Sbjct: 700 GLTILTEQEWLDLISQPG 717


>gi|13471538|ref|NP_103104.1| DNA ligase [Mesorhizobium loti MAFF303099]
 gi|75543387|sp|Q98KC4|DNLJ_RHILO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|14022280|dbj|BAB48890.1| DNA ligase [Mesorhizobium loti MAFF303099]
          Length = 734

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 298/737 (40%), Positives = 438/737 (59%), Gaps = 32/737 (4%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+++LS  +A  EL  L +EI+ HD  Y+    P I D+EYDAL+RR  AI   FP L R
Sbjct: 5   PVDSLSESEAEAELKRLAEEIAGHDRRYHAEDAPTITDAEYDALRRRNLAIEERFPGLVR 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
               + P  ++G        KV H++P LSL K +  ED+  FI R  RF+ +  D  I 
Sbjct: 65  E---DSPSRRVGAPPAEGFAKVRHAVPMLSLAKAYTDEDVTDFIERGRRFFDRDKDLDIA 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           FT EPKIDG   ++RYE G FV  A RGDG  GED++A +R I  IP  L  +  P++IE
Sbjct: 122 FTAEPKIDGLSASLRYENGVFVQGATRGDGAVGEDITANLRTIADIPAKLKGSGWPDVIE 181

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           +RGEVY++  +F AL     A G + Y NPRN A+G LR+ + +   +R L FF +  G 
Sbjct: 182 IRGEVYMTYAEFEALKARSAAAGGQDYVNPRNTAAGSLRQKDASVTASRNLKFFAYAWGF 241

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           T+   A  QYE +QK    GF ++  + +A +   +V+ Y+ ++  RS+L YDIDG+VYK
Sbjct: 242 TTADPAPTQYESVQKFADWGFKISPLMVRAKSVEELVAQYHLIEEQRSSLGYDIDGVVYK 301

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+  LQ++ G     PRW ++HKF  +QA T +  IDIQ+GRTG L PVARL PV +GG
Sbjct: 302 VDQLELQRRWGFVTGEPRWAVAHKFPAEQAMTTVQKIDIQVGRTGTLAPVARLAPVTVGG 361

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ N TLHNEDYIKG D++G  +R G D+R+GD V+++RAG+VIP++V +++++R  DA
Sbjct: 362 VVVENVTLHNEDYIKGFDSNGLPIRDGIDVRIGDTVVIQRAGDVIPQIVSVVIDKRPADA 421

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P+ FP  CP+C S   R++N KTGK  +  RCTG L C+AQ +ERL+HFVSR A +IEG
Sbjct: 422 VPYEFPHTCPVCGSPATREINEKTGKEDSRRRCTGELICAAQAVERLRHFVSRGALDIEG 481

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ----------------------TSTTK 523
           LG + +D FF     A  I+  ADIFTL+ R+                        +   
Sbjct: 482 LGAENIDTFFN----AGLIKTAADIFTLRDRRPAVTKALAERREEQARQREAASGKTRKN 537

Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
           + ++       +  L+ +I+ RR   L+RFIF+LGIRH+G   A  LAK + + +   + 
Sbjct: 538 VRSVEDRNYEGLDKLFAAIDSRREPELDRFIFALGIRHIGETTAAVLAKTFSTIEELIR- 596

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
           +    A   D       V  +GD +  A+ +F+ N RN   ++ LL++V P       + 
Sbjct: 597 VGKETAAAEDPHTVFPSVNGIGDTVIDALCDFFGNERNDDVLDKLLEQVKPKPYIVTVSA 656

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
            SE+  K +VFTGTL+K+ R +A+    +LGA V+  +S KTD+++ G   GSKL+ A +
Sbjct: 657 DSEVAGKTIVFTGTLEKMTRSEAKAMAERLGAKVAGSVSAKTDLLVAGPGAGSKLKLASE 716

Query: 704 LGVKIMNEEQFLFLLQQ 720
           LGV++++E+ +L  + +
Sbjct: 717 LGVEVIDEDTWLQRVGK 733


>gi|134300185|ref|YP_001113681.1| NAD-dependent DNA ligase [Desulfotomaculum reducens MI-1]
 gi|190359251|sp|A4J703|DNLJ_DESRM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|134052885|gb|ABO50856.1| DNA ligase, NAD-dependent [Desulfotomaculum reducens MI-1]
          Length = 670

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 248/716 (34%), Positives = 385/716 (53%), Gaps = 49/716 (6%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS +Q++  + +L +EI++H+  YY   +P I D++YD L +    +    P+L   
Sbjct: 1   MADLS-QQSKARVEALRREINHHNYQYYVLDQPTITDAQYDQLMQELLRLEERHPELV-- 57

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ P  ++GG++      V H IP LSL   +   DLR+F  R+  +        + +
Sbjct: 58  -TPDSPTQRVGGQVQRGFSSVPHKIPMLSLGNAFGEGDLREFDRRVRSYL---PGEEVKY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  I++ YEKG  V  A RGDG  GED++  ++ I  IP  L+  +P  +EVR
Sbjct: 114 VVELKIDGLAISLWYEKGLLVRGATRGDGELGEDITINLKTIRAIPLRLTQEVP-FLEVR 172

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE Y+ K+ F+ LN+     G   +ANPRNAA+G LR+L+P     R L+ F++ +G   
Sbjct: 173 GEAYMPKDSFVRLNEAREEAGEPLFANPRNAAAGSLRQLDPKITAARNLSVFMYAIGYIE 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   E L  ++ LG  +N   +   +   ++ + ++ ++ R  LPY IDG+V KV+
Sbjct: 233 GAKPPSHAESLAWLKELGIRINPDHQVCGSIDEVIDFISQWQAKRYQLPYAIDGMVIKVN 292

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               Q++LG   +SPRW I++KF  +QA + + DI I++GRTG+LTP A LEPV + G  
Sbjct: 293 SLEQQQRLGTTMKSPRWAIAYKFPAEQAVSTIKDIIIRVGRTGVLTPTAILEPVQLAGTT 352

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNED I+            +DIR+GD+ LV++AG++IP++V +   +R  +  P
Sbjct: 353 VSKATLHNEDIIR-----------QKDIRIGDKALVQKAGDIIPEIVQVYPEKRTGNEVP 401

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP C + VVR          AAHRCT    CSA+  E + HFVSR A +I GLG
Sbjct: 402 FILPVTCPECGAEVVRVAGE------AAHRCTN-ENCSAKSREGIIHFVSRSAMDIMGLG 454

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +  ++   K       ++ PAD++ L+                G  S   L  +I   +N
Sbjct: 455 EGIVNQLIK----GGLVKDPADLYDLKYEDLIRQ------ERMGARSSQKLLAAIEASKN 504

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL + +F LGIRHVG   A+ LA+ + S Q   Q               L  +  +G  
Sbjct: 505 NSLGQLLFGLGIRHVGERAAKILARQFGSMQALMQAT----------AEDLTGISEIGPR 554

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHK 665
           IA++I+E++    N   +E L K     +   E  ++    +  K  V TGTL+   R +
Sbjct: 555 IAESIMEYFSRQENQGLIERLSKAGVNMLEEVEQTESTDQTLSGKTFVVTGTLEGFSRQE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           AQ  + + G  VS  +S+KT+ ++VG+NPGSK +KA+QLG+ I+ E+ F+ LLQQ 
Sbjct: 615 AQRAIEERGGKVSGSVSKKTNYVVVGENPGSKHDKARQLGITILTEQDFVKLLQQQ 670


>gi|83858905|ref|ZP_00952427.1| NAD-dependent DNA ligase [Oceanicaulis alexandrii HTCC2633]
 gi|83853728|gb|EAP91580.1| NAD-dependent DNA ligase [Oceanicaulis alexandrii HTCC2633]
          Length = 695

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 299/716 (41%), Positives = 448/716 (62%), Gaps = 30/716 (4%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           L  + AL+ ++A  EL  L +EIS HD  YY+   P I D+ YDAL+ R  AI   FP+L
Sbjct: 5   LKDVNALTSDEAASELERLAREISRHDKAYYEKDAPKISDAAYDALRARNSAIEARFPEL 64

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            R    + P +++G + +    +V H++P LSL   +  +D+R F  RI RF   K D  
Sbjct: 65  KRK---DSPSDRVGAKPSEQFGEVVHAVPMLSLGNAFEDQDVRDFADRIRRFLNLK-DEK 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + FT EPKIDG    +RYE+G+ V  A RGDG +GE+V+A ++ I  IP  L  ++P+++
Sbjct: 121 LVFTAEPKIDGLSANLRYEQGELVIGATRGDGRTGENVTANLKTIADIPHRLEGDVPDVL 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY+S  DF  LN      G+  Y NPRNAA+G LR+++P     R L FF +  G
Sbjct: 181 EVRGEVYMSHADFAQLNAMQEERGKPAYKNPRNAAAGSLRQIDPNVTAERPLRFFAYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + SE  A+ QY+ ++++  LGF +N+ + +  +   ++++Y  +++ R+ L YDIDG+VY
Sbjct: 241 ELSEPLAETQYDAVKRLGQLGFVINDDMVRVESVEDVLAHYRALEAKRADLGYDIDGVVY 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD    Q++LG  AR+PRW I+HKF+ ++A TRL  I+IQ+GRTG LTPVA+LEPV +G
Sbjct: 301 KVDRLDWQERLGFVARAPRWAIAHKFSPEKAVTRLNAIEIQVGRTGALTPVAKLEPVTVG 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++NATLHN+D I+            +D+RVGD V+++RAG+VIP+VV++++++R   
Sbjct: 361 GVVVSNATLHNQDEIER-----------KDVRVGDTVIIQRAGDVIPQVVEVVLDKRPEA 409

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+PF+FP+ CP+C S  VR+            RCTGGL C AQ +ERLKHFVSR AF+IE
Sbjct: 410 AEPFAFPTLCPVCGSHAVREEGE------VVRRCTGGLICDAQAVERLKHFVSRKAFDIE 463

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI--ENILGFGDVSVTNLYDSI 542
           GLG +Q++ FF        ++ PADIFTL+ R +        +   G+G+ S  NL+ SI
Sbjct: 464 GLGAKQIEAFFHE----GLVKQPADIFTLRARNEAGEINPPIQTREGWGERSAANLFGSI 519

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           ++RRNI L RF+F+LGIRHVG E AR +A+ + S+Q   +          + + + + + 
Sbjct: 520 DQRRNIGLARFLFALGIRHVGEETARLIARSFTSWQVVRE-TAEAANEPGEAFAAFMDID 578

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G+   +A+ EF+    N  A+ ALL  V+      +    S +  K +VFTG+L++  
Sbjct: 579 GIGETAVKALAEFFAESHNQDALNALLAHVTVEDAE-QVAAESPVAGKTVVFTGSLERFT 637

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+     LGA VS  +S KTDI++ G   GSKL+KAQ+LGV+ M E+++L L+
Sbjct: 638 RDEAKAKAQSLGAKVSGSVSGKTDILVAGPGAGSKLKKAQELGVQTMTEDEWLALI 693


>gi|94499335|ref|ZP_01305873.1| DNA ligase, NAD-dependent [Oceanobacter sp. RED65]
 gi|94428967|gb|EAT13939.1| DNA ligase, NAD-dependent [Oceanobacter sp. RED65]
          Length = 694

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 251/711 (35%), Positives = 378/711 (53%), Gaps = 46/711 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            ++ L  E++  +  YY    P I D+EYD L      +    P+L      + P  ++G
Sbjct: 25  RVAELRDELNRANHAYYVLDDPSIPDAEYDRLFHELKGLESKHPELL---TKDSPTQRVG 81

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                    V H +P LSL+  ++ +D+R F  RI      K  +SI F  EPK+DG  +
Sbjct: 82  ATPLSEFETVAHEVPMLSLDNAFDDQDMRDFNRRISERLTTK--SSIRFACEPKLDGIAV 139

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDF 198
           ++ YE GK V AA RGDG  GE+++  IR + ++P  L  N  P ++EVRGEVY+ K  F
Sbjct: 140 SLLYENGKLVRAATRGDGAVGENITQNIRTVYSVPLTLMGNDHPPVLEVRGEVYMPKKGF 199

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IFAKGQYE 256
            A N +    G K + NPRNAA+G LR+L+     +R L F  + +G+           E
Sbjct: 200 EAFNVKARERGEKTFVNPRNAAAGSLRQLDSRITASRPLEFCCYSMGRVDGAELPTVHSE 259

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+K    GF +N  +       G + YY  + + R+ LPY+IDG+VYKVD+  LQ++LG
Sbjct: 260 ILKKFSEWGFKINPEMAVVEGVEGCLDYYENLAAKRNDLPYEIDGIVYKVDDLKLQQRLG 319

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW I+ KF  ++  T L  I+ Q+GRTG +TPVARLEPV +GG  ++NATLHN 
Sbjct: 320 FVSRAPRWAIARKFPAQEEMTLLKGIEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNM 379

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D ++ L           D R+GD V+++RAG+VIP+V  ++  +R  ++Q    P  CP+
Sbjct: 380 DEVERL-----------DARIGDTVVIRRAGDVIPQVASVVKEKRPDNSQKIQLPDACPV 428

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V R          A  RCTGGL C+AQ+ E +KHF SR A +I+GLG + ++    
Sbjct: 429 CDSHVERVEGE------AVARCTGGLVCAAQRKEAIKHFASRKAMDIDGLGDKIVEQLVD 482

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   D++ L+     S      +   GD S  NL  +I   +N S  +F+++
Sbjct: 483 E----GKIKSFVDLYKLKHEDIAS------LERMGDKSAQNLLKAIEASKNTSFPKFLYA 532

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A +L +++L+ +   +            +  LI V  VG I+A+ I+ F+
Sbjct: 533 LGIREVGVATANNLVQHFLTIRALVKA----------SFDELIEVDDVGPIVAEHILNFF 582

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
             P N   ++ LL             N    +  +  V TGTL  + R  A+ Y+ QLGA
Sbjct: 583 AEPHNQTIIDGLLNIGITWPEVKSVSNSELPLSGETYVVTGTLSAMGRENAKAYLQQLGA 642

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            V+  +S+KT  ++ G+  GSKL KAQ L V +++EEQFL LL ++     
Sbjct: 643 KVAGSVSKKTSALVAGEKAGSKLTKAQDLEVPVLDEEQFLSLLAEHGIEPE 693


>gi|238752012|ref|ZP_04613496.1| DNA ligase [Yersinia rohdei ATCC 43380]
 gi|238709712|gb|EEQ01946.1| DNA ligase [Yersinia rohdei ATCC 43380]
          Length = 670

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 246/712 (34%), Positives = 405/712 (56%), Gaps = 47/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L+  + +H+  YY    P I D+EYD + ++   +    P+L  +   + 
Sbjct: 1   MESIIQQINQLKTSLRHHEHQYYVLDAPEIPDAEYDRMMQQLRELEAQHPELITN---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +  +V H +P LSL+ +++ E    F  R++     K    + F  E K
Sbjct: 58  PTQRVGGAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRL--KTAEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++  +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITVNVRTIRAIPLRLHGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNEEARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLVDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV++ V+       ++++Y +++  R+ L +DIDG+V KVD  +
Sbjct: 236 PRSHIQRLMQFKDWGLPVSDRVKLCTGSDQVIAFYRQVEQDRAELGFDIDGVVIKVDSLN 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R PDA+   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPPDAKEILF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PDHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+FTL         K+  +   G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFTLTA------GKLTGLDRMGPKSAQNLIVALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLANLRAA----------DIDALKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +EAL + ++    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVLNFLNEEHNQKVIEALEQVITWPEPQRIITEEIDSPFAGKTVVLTGSLTVLSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+K+++E + + LL +
Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLIKAQELGIKVIDEAEMILLLGE 670


>gi|84686905|ref|ZP_01014789.1| DNA ligase, NAD-dependent [Maritimibacter alkaliphilus HTCC2654]
 gi|84665102|gb|EAQ11582.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium HTCC2654]
          Length = 710

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 292/720 (40%), Positives = 426/720 (59%), Gaps = 13/720 (1%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M       +E L    AR EL+ L   ++  +  Y+    P + D+ YDA KRR   I  
Sbjct: 1   MTGHSETAVEKLDEAGARAELARLADLLASANTAYHTEDAPEMSDAAYDAAKRRNAEIEA 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP+L R    + P +++G        KV H +  LSL   ++ + +  F  ++  F   
Sbjct: 61  RFPELKRD---DSPTDQVGAAPAEGFSKVRHRVRMLSLANAFDDDHVIDFDRQVRAFLGF 117

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             +  + FT EPKIDG  +++RYE G+ + AA RGDG  GE+V+A  R I  IP+ LS  
Sbjct: 118 SAEEPLAFTAEPKIDGLSLSLRYENGELMQAATRGDGGEGENVTANARTIDDIPQRLSGA 177

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFF 239
            P+++EVRGEVY+S +DF  LN+   A G K +ANPRNAA+G LR+L+          F+
Sbjct: 178 -PDVLEVRGEVYMSHDDFARLNESQSAKGGKTFANPRNAAAGSLRQLDSRITEARPLRFY 236

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ S+  A  Q   ++K+  LGF  N   +   T   +  +Y+ ++  R+TL YDI
Sbjct: 237 AYAWGELSDPLADTQMGAIEKLADLGFSTNPLTKIVETPEAMFDHYHAIEEQRATLGYDI 296

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKV++ +LQK+LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL 
Sbjct: 297 DGVVYKVNDLALQKRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLS 356

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG +++NATLHNEDYI G D+ G  +RGG+DIRVGD V V RAG+VIPKV D+ + 
Sbjct: 357 PVTVGGVVVSNATLHNEDYIAGRDSKGGDIRGGKDIRVGDWVQVYRAGDVIPKVADVDLT 416

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  DA+P+ FP  CP C S  +R+         A  RCTGG+ C AQ +E+LKHFVSR 
Sbjct: 417 KRPDDAEPYVFPDTCPECGSEAIREEG------DAVRRCTGGMICPAQAVEKLKHFVSRS 470

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+IEGLG +Q++ F+   D    IR PADIFT  RR   +  K++N  G+G+ S   L+
Sbjct: 471 AFDIEGLGAKQVEAFYF--DEGLPIREPADIFTFARRDGAALAKLKNRDGWGEKSAAKLF 528

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           ++I +RR I L R IF+LGIRHVG   A  LA++Y  +  F   +          W  L+
Sbjct: 529 EAIEERRRIPLNRVIFALGIRHVGENSANLLARHYGDWPTFEAAMTGASPEGGAAWEELL 588

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +  VG+ +A ++V  +       +++ L+ E+        +   S +  K +VFTGTL+
Sbjct: 589 SIDGVGETMATSLVTTFHQEAERASIDRLVAELDIEPVEAPQTEGSPVAGKTVVFTGTLE 648

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           K+ R +A+     LGA VS  +S KTD+++ G   GSK +KA +LG++ ++E+ +L L+ 
Sbjct: 649 KMTRAEAKARAEALGAKVSGSVSAKTDLLVAGPGAGSKAKKAAELGIETIDEDGWLDLIN 708


>gi|83592275|ref|YP_426027.1| DNA ligase (NAD+) [Rhodospirillum rubrum ATCC 11170]
 gi|123753272|sp|Q2RVV5|DNLJ_RHORT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83575189|gb|ABC21740.1| DNA ligase (NAD+) [Rhodospirillum rubrum ATCC 11170]
          Length = 698

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 282/719 (39%), Positives = 421/719 (58%), Gaps = 31/719 (4%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +IP+  L+  +A +EL  L  EI+ HD  Y+Q   P I D EYDAL RR + I  AFP+L
Sbjct: 1   MIPVADLTEAEAARELERLAAEIARHDRLYHQQDAPEITDGEYDALVRRNNEIEAAFPEL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            R    + P   +G        KVTH++P LSL  +++ ++ R+F  RI RF     + +
Sbjct: 61  VRG---DSPSAHVGAAPAEGFAKVTHALPMLSLGNVFSDDEAREFDQRIRRFLSLDGETT 117

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV--LSLNIPE 183
           I +  EPKIDG   + RYE G +  AA RGDG +GED++A +  +  +P+       +PE
Sbjct: 118 ISYVAEPKIDGLSFSARYENGVYRRAATRGDGTTGEDITANLATLTDLPQRLTGDGPVPE 177

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
           ++EVRGEV+++K DF ALN   I  G KP+ANPRNAA+G LR+L+P    +R L+ F + 
Sbjct: 178 VLEVRGEVFMTKADFRALNQRQIDAGAKPFANPRNAAAGSLRQLDPEITRSRSLSLFAYA 237

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G+   +  +  +  L++++  GFPVN   R       ++   + +   R+ L YDIDG+
Sbjct: 238 SGEVKGLEVESHHAFLERLKTWGFPVNPQTRPCQGVEDLIEATHALALQRAALDYDIDGV 297

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYKVD    QK+LG  +R+PRW I+ KF  ++A T +  I IQ+GRTG LTPVA LEPV 
Sbjct: 298 VYKVDRVDWQKRLGFVSRAPRWAIARKFPAERAQTTVKAIQIQVGRTGTLTPVAILEPVT 357

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG ++  ATLHNED I             +D+R+GD V ++RAG+VIP+VV++++++R 
Sbjct: 358 VGGVVVGRATLHNEDEIAR-----------KDVRIGDMVTIQRAGDVIPQVVEVLLDQRP 406

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D+ PF FP  CP+C S  VR           A RC GGL CSAQ +ERLKHFVSRDAF+
Sbjct: 407 ADSAPFVFPETCPVCGSHAVRQEGE------VARRCAGGLICSAQAVERLKHFVSRDAFD 460

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT--STTKIENILGFGDVSVTNLYD 540
           IEGLG + ++ F         I  PADIF L+ +     +   + +  G+G  S  NL+ 
Sbjct: 461 IEGLGGKHIETFHNE----GLITQPADIFALEAKDNEPGALQHLRSREGWGPKSAENLFK 516

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I  R+ I L+RFI++LGIR VG   AR LA +Y S+  + + ++      ++ +  L  
Sbjct: 517 AITARKTIPLDRFIYALGIRQVGQATARLLAGHYASFAAWRKAMDEAQTEGSEAFADLQN 576

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTL 658
           +  +G  +A+ +V F+    N  A++AL+          R +    S +  K +VFTGTL
Sbjct: 577 IESIGPSVARDLVAFFGEEHNRAALDALIDAGVEVLDFARPQAAGDSPLAGKTVVFTGTL 636

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             + R +A+     LGA V+  +S KTD ++VG + GSK +KA++LG+ +++E +F  +
Sbjct: 637 DTMSRGEAKARALALGAKVTGSVSAKTDYVVVGADAGSKEKKARELGLTVLSEAEFRAM 695


>gi|311278661|ref|YP_003940892.1| DNA ligase, NAD-dependent [Enterobacter cloacae SCF1]
 gi|308747856|gb|ADO47608.1| DNA ligase, NAD-dependent [Enterobacter cloacae SCF1]
          Length = 671

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 255/713 (35%), Positives = 393/713 (55%), Gaps = 48/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L++L   + +H+  Y+    P + D+EYD L R    +    P+L     P+ 
Sbjct: 1   MEPIEQQLTALRATLRHHEYLYHVMDAPELPDAEYDRLMRELRELEAKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E   +  +V H IP LSL+ +++ E    F  R+      K  + + +  E K
Sbjct: 58  PTQRVGAEPLGAFSQVRHEIPMLSLDNVFDEESFLAFNKRVQDRL--KSSDKLTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED++A +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGLLVRAATRGDGTTGEDITANVRTIRAIPLKLRGDDVPARVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +NDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINDEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L++ +  G PV++ V   N+   +++YY +++  R TL +DIDG+V KVD   
Sbjct: 236 PASHLGRLRQFKSWGLPVSSRVTLCNSPEEVLAYYRKVEEDRPTLGFDIDGVVIKVDSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPDDTREIEF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A ++EG+G + 
Sbjct: 405 PAHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVEGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  S 
Sbjct: 459 IDQLVEKE----YVLTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKETSF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA +Y S +                   L  VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAHYGSLEALIAA----------SIDDLQTVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   ++ LL E       +    + + S    K +V TG+L  + R  A+
Sbjct: 559 HVFNFFAEESNREVIQQLLAEGIHWPAPVVVKAEEIDSPFAGKTVVLTGSLSLMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + L LL +
Sbjct: 619 ARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEMLRLLGE 671


>gi|238765534|ref|ZP_04626449.1| DNA ligase [Yersinia kristensenii ATCC 33638]
 gi|238696249|gb|EEP89051.1| DNA ligase [Yersinia kristensenii ATCC 33638]
          Length = 670

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 250/712 (35%), Positives = 403/712 (56%), Gaps = 47/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++   +    P+L  +   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITN---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R++     K    + F  E K
Sbjct: 58  PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRL--KSAEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE+G+ V AA RGDG +GE+++A +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEEGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  LNDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNDEARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+N V+       ++++Y +++  R+ L +DIDG+V KVD   
Sbjct: 236 PRSHIQRLMQFKHWGLPVSNRVKLCTGSEQVITFYRQVEQDRAGLGFDIDGVVIKVDSLD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  DA+  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A ++EG+G + 
Sbjct: 405 PEHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVEGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+FTL         K+  +   G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFTLTA------GKLTGLDRMGPKSAQNLIAALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+I+A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNLTNLRAA----------DIEALKSVPDVGEIVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +EAL K +S    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVLNFLGEEHNQKVIEALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL +
Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLLGE 670


>gi|153872826|ref|ZP_02001606.1| NAD-dependent DNA ligase [Beggiatoa sp. PS]
 gi|152070708|gb|EDN68394.1| NAD-dependent DNA ligase [Beggiatoa sp. PS]
          Length = 670

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 252/712 (35%), Positives = 391/712 (54%), Gaps = 48/712 (6%)

Query: 12  LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ++I  Q +++ + L   ++  +  YY   +P I DSEYD L R   A+   +P L  +  
Sbjct: 1   MTISIQIQQQATQLRDTLNKQNYYYYVLDEPRIPDSEYDKLMRELHALEENYPALITA-- 58

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++G +   +  +V H+IP LSL   ++ ++++ F  R+           + +  
Sbjct: 59  -DSPTQRVGAKPLTAFSEVIHTIPMLSLNNAFDDKEVQDFDKRVRERLG---GEPVEYVA 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189
           EPK+DG  I++RYE G  V AA RGDGH GEDV+  ++ I TIP  L  +  P ++EVRG
Sbjct: 115 EPKLDGLAISLRYENGLLVKAATRGDGHQGEDVTQNVKTIKTIPLRLLGDDYPRVLEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EV++SK DF  LN +    G+K +ANPRNAA+G LR+L+     TR L F  + +G    
Sbjct: 175 EVFMSKADFEKLNQQQTLQGQKTFANPRNAAAGSLRQLDSRVTATRSLTFLAYTIGVVEG 234

Query: 249 -IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   ++L  ++  G P++  +   +   G + YY      R  LP++IDG+VYKV+
Sbjct: 235 GELPHRHNKILYTLQKWGIPISIYIEMVHDIQGCLKYYQNTLLYREKLPFEIDGVVYKVN 294

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               Q+ LG  +R+PRW I+HK   ++  T +L ID+Q+GRTG LTPVARL PV +GG  
Sbjct: 295 SLEQQEILGFVSRAPRWAIAHKLPAQEVLTEVLAIDVQVGRTGALTPVARLAPVTVGGVT 354

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNATLHN+D I             ++IRVGD V+V+RAG+VIP++V ++  +R  + QP
Sbjct: 355 VTNATLHNQDEIDR-----------KNIRVGDTVIVRRAGDVIPEIVGVLPEKRPNNTQP 403

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CPIC S V R          A  RCTGGL C+AQ+ + ++HF SR A +I+GLG
Sbjct: 404 FVLPKKCPICDSDVTRVEGE------AVARCTGGLYCAAQRKQAIQHFASRRAMDIDGLG 457

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ ++    +E     ++  ADI+TL   Q        N+   G  S  N+  ++ K ++
Sbjct: 458 EKLVEQLINNE----LVKNIADIYTLNHEQW------ANLERMGPKSAENIIKALEKSQS 507

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +  +F+++LGIR VG   A +LA+ +   +                   L ++  +G I
Sbjct: 508 TTFAKFLYALGIREVGESTAHTLAQSFGRLEKLIPATEA----------DLEQIQDIGPI 557

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKA 666
           +A+ IV F+Q   N   ++ L +           + +   +  +  V TGTL  I RH+A
Sbjct: 558 VAKHIVTFFQQSHNREIIQRLQQIGIHWPENEPTSTNTQPLSGQTFVLTGTLTNITRHEA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +  LGA VS  +S+KT  ++ G+  GSKLEKA+ LG+KI++E  FL LL
Sbjct: 618 KARLEALGAKVSGSVSKKTACVVAGEKAGSKLEKARTLGIKIIDENAFLALL 669


>gi|238799224|ref|ZP_04642672.1| DNA ligase [Yersinia mollaretii ATCC 43969]
 gi|238716921|gb|EEQ08789.1| DNA ligase [Yersinia mollaretii ATCC 43969]
          Length = 670

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 248/712 (34%), Positives = 406/712 (57%), Gaps = 47/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++   +    P+L  S   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R++   ++ +   + F  E K
Sbjct: 58  PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRAE--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE+G+ V AA RGDG +GE+++A +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEEGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  LNDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRRLAFFCYGVGLLDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV++ V+       ++++Y +++  R++L +DIDG+V KVD+  
Sbjct: 236 PRSHIQRLMQFKAWGLPVSHRVKLCTGSEQVIAFYRQVEQDRASLGFDIDGVVIKVDDLD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  DAQ   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAQEILF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A ++EG+G + 
Sbjct: 405 PEHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVEGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+F L         K+  +   G  S  NL  +++K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFELTA------GKLTGLDRMGPKSAQNLIVALDKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNMANLRAA----------DIDALKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +EAL K +S    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVLNFLSEEHNQKVIEALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL +
Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLLGE 670


>gi|78223924|ref|YP_385671.1| NAD-dependent DNA ligase C4-type [Geobacter metallireducens GS-15]
 gi|123756373|sp|Q39S28|DNLJ_GEOMG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78195179|gb|ABB32946.1| NAD-dependent DNA ligase C4-type [Geobacter metallireducens GS-15]
          Length = 671

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 250/710 (35%), Positives = 375/710 (52%), Gaps = 44/710 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A + ++ L  EI  HD  YY   +P + D+EYDAL R    +    P+L     P
Sbjct: 1   MDRNAAERRIAELRAEIRRHDHLYYVLDRPELTDAEYDALYRELLKLEEEHPELV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       +VTH IP LSLE  +   D+ +F  R+ R         I +  E
Sbjct: 58  DSPSRRVGGAPLEKFKQVTHRIPMLSLENAFTDGDIAEFDARVKRALALPAGEEIAYVCE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PK+DG  + + YE G     + RGDG  GE+V+  ++ + +IP  L   N PE++EVRGE
Sbjct: 118 PKLDGLAVELVYEYGTLTVGSTRGDGVVGENVTQNLKTVKSIPLRLEGENPPELLEVRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249
           V++    F  LN +    G  P+ANPRNAA+G LR+L+      R L  F +  G+    
Sbjct: 178 VFLPLAAFQRLNAQREEEGEPPFANPRNAAAGSLRQLDSRITARRPLTMFCYAPGEIRGA 237

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q E L  +R  G PV +  RQ     G+++YY EM   R TLPY+IDG+V KVD F
Sbjct: 238 DFGSQGEFLSALRQRGLPVTSLARQVTGVAGVLAYYREMTEKRDTLPYEIDGVVVKVDSF 297

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ++LGE++RSPRW ++ KF  +QA T + DI   +GRTG++TP A L PV + G  ++
Sbjct: 298 PLQRELGEKSRSPRWAVAVKFPPRQAVTVIEDIVPSVGRTGVITPTANLRPVEVSGVTVS 357

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN + ++            +DIR+GD V+++RAG+VIP VV ++  +R    +   
Sbjct: 358 RATLHNWEEMER-----------KDIRIGDTVVIERAGDVIPAVVKVLTEKRSGSERFLP 406

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S VV+  +    +         GL+C AQ  E + HF SR+A ++EGLG++
Sbjct: 407 IPAACPECGSEVVKIPDEVAVR-------CMGLSCPAQIRESIIHFASRNAMDMEGLGEK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   +       +   AD++TL R               G+    NL ++I   +   
Sbjct: 460 YIEQLLR----LGLVGNVADLYTLTRDDFMKF------DRMGEKLAENLLNAIEASKKRE 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFIF+LGIRHVG   A+ LA  + S  N A+               L+ +  +G  +A
Sbjct: 510 LSRFIFALGIRHVGEHTAKLLATAFGSIDNLARATEA----------ELLSIREIGPQVA 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           Q+I  F+ N  N   +  +++         EK V  +   K  VFTGTL +  R +AQ+ 
Sbjct: 560 QSITTFFHNEGNRETIRRMVEAGV-EPTVEEKKVGGKFTGKTFVFTGTLIRFSRSEAQKM 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V   G   +  +S+KTD ++ GD  GSKL+KA+QLGV ++ E++FL +L+
Sbjct: 619 VESEGGHAAGSVSKKTDYVVAGDEAGSKLDKARQLGVTVLAEDEFLQMLE 668


>gi|212218835|ref|YP_002305622.1| NAD-dependent DNA ligase [Coxiella burnetii CbuK_Q154]
 gi|254781301|sp|B6J878|DNLJ_COXB1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|212013097|gb|ACJ20477.1| NAD-dependent DNA ligase [Coxiella burnetii CbuK_Q154]
          Length = 673

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 246/709 (34%), Positives = 388/709 (54%), Gaps = 46/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + +K +  L +EI+ H+  YY  S+P I DS YD L      +   +P+   +  P+ 
Sbjct: 7   PAKIQKRIERLREEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSS 63

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E       V H IP LSL+ +++ + LR F  RI +    K D    +  EPK
Sbjct: 64  PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRL--KLDKPFEYVCEPK 121

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV 
Sbjct: 122 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 181

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + +  F   N E    G K +ANPRNAASG LR+L+P     R L F+ + +G       
Sbjct: 182 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 241

Query: 252 K-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   
Sbjct: 242 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG +TPVARLEPV++ G  ++N
Sbjct: 302 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSN 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D +             +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    
Sbjct: 362 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 410

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C + V++          A  RC GGL C AQ  E +KHF SR A +IEGLG + 
Sbjct: 411 PSRCPVCHAEVIKPEGE------AVARCMGGLYCRAQLRESIKHFASRRALDIEGLGDKL 464

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F + +     I+    I+ L++      + I  +   G+ S  NL  +I K +  +L
Sbjct: 465 VELFIQEK----LIKDITGIYQLKK------SAITALPRMGEKSAENLLTAIEKSKKTTL 514

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   AR+LA+++       +              +L  +  +G ++A+
Sbjct: 515 PRFLYALGIRGVGDTTARTLARHFHELDLLMKA----------SIETLQEIRDIGPVVAE 564

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I  F+    N   +  L+  +     + +  V SEI  K  V TG L+ + R +A+E +
Sbjct: 565 NIHAFFHQKHNAELINKLI-HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 623

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 624 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 672


>gi|153207803|ref|ZP_01946403.1| DNA ligase, NAD-dependent [Coxiella burnetii 'MSU Goat Q177']
 gi|120576355|gb|EAX32979.1| DNA ligase, NAD-dependent [Coxiella burnetii 'MSU Goat Q177']
          Length = 670

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 246/709 (34%), Positives = 388/709 (54%), Gaps = 46/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + +K +  L +EI+ H+  YY  S+P I DS YD L      +   +P+   +  P+ 
Sbjct: 4   PAKIQKRIERLREEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSS 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E       V H IP LSL+ +++ + LR F  RI +    K D    +  EPK
Sbjct: 61  PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRL--KLDKPFEYVCEPK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV 
Sbjct: 119 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + +  F   N E    G K +ANPRNAASG LR+L+P     R L F+ + +G       
Sbjct: 179 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 238

Query: 252 K-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   
Sbjct: 239 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG +TPVARLEPV++ G  ++N
Sbjct: 299 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSN 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D +             +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    
Sbjct: 359 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 407

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C + V++          A  RC GGL C AQ  E +KHF SR A +IEGLG + 
Sbjct: 408 PSRCPVCHAEVIKPEGE------AVARCMGGLYCRAQLRESIKHFASRRALDIEGLGDKL 461

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F + +     I+    I+ L++      + I  +   G+ S  NL  +I K +  +L
Sbjct: 462 VELFIQEK----LIKDITGIYQLKK------SAITALPRMGEKSAENLLTAIEKSKKTTL 511

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   AR+LA+++       +              +L  +  +G ++A+
Sbjct: 512 PRFLYALGIRGVGDTTARTLARHFHELDLLMKA----------SIETLQEIRDIGPVVAE 561

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I  F+    N   +  L+  +     + +  V SEI  K  V TG L+ + R +A+E +
Sbjct: 562 NIHAFFHQKHNAELINKLI-HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 620

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 621 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 669


>gi|183599716|ref|ZP_02961209.1| hypothetical protein PROSTU_03219 [Providencia stuartii ATCC 25827]
 gi|188021975|gb|EDU60015.1| hypothetical protein PROSTU_03219 [Providencia stuartii ATCC 25827]
          Length = 671

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 246/709 (34%), Positives = 395/709 (55%), Gaps = 49/709 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ L +L+Q++ +H+  Y+    P I D+EYD L     AI    P+   S   + P  +
Sbjct: 4   KQHLDTLKQQLRHHEYQYHVLDAPEIPDAEYDKLMEELKAIEAEHPEWITS---DSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G     +   V H IP LSL+ +++ E    F  R+      KD     F  E K+DG 
Sbjct: 61  VGAAPLAAFDTVRHEIPMLSLDNVFDEESYLAFDKRVRDRL--KDQQEQTFCCELKLDGL 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKN 196
            +++ YE G+ V AA RGDG  GE++++ +R I  IP  L+    P  +E+RGEV++ + 
Sbjct: 119 AVSLLYENGELVQAATRGDGTVGENITSNVRTIRAIPLRLTGENIPARVEIRGEVFMPQK 178

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKGQ 254
            F ALN+E    G K +ANPRNAA+G LR+L+P     R L F+ +G+G           
Sbjct: 179 GFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGETLPDTH 238

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE L + +  G PV+  V+       ++ +Y+E++  R TL +DIDG+V K+++ + Q++
Sbjct: 239 YERLMQFKKWGLPVSEYVQLRTGAQAVLDFYHEIEKARPTLGFDIDGVVIKINDIATQEE 298

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW  + KF  ++  T L D++ Q+GRTG +TPVARLEPV + G  ++NATLH
Sbjct: 299 LGFVSRAPRWATAFKFPAQEQMTLLKDVEFQVGRTGAITPVARLEPVQVAGVTVSNATLH 358

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            + +GD V+++RAG+VIP++V ++ +ER  D++   FP+ C
Sbjct: 359 NADEIERL-----------GVHIGDTVVIRRAGDVIPQIVSVVESERPADSREIVFPTHC 407

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + +D  
Sbjct: 408 PVCGSDVERVEGE------AVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQL 461

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     ++ PAD++ L      S   +  +   G  S  NL +++NK ++ +L RFI
Sbjct: 462 VEKE----YVKNPADLYQL------SAGILTGLDRMGPKSAQNLVEALNKSKSTTLARFI 511

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR VG   A +LA +Y + +               D  SL  V  VG ++A+ +V 
Sbjct: 512 YALGIREVGEATAANLAAHYGTLEALMAA----------DEESLKTVQDVGHVVAKHVVN 561

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           F++   N   ++AL+ + +             + S    K +V TG+L ++ R +A++ +
Sbjct: 562 FFREEHNQTVIQALIDKANIHWPEAVAVDVSTIDSPFAGKTVVLTGSLSQLTRDEAKDKL 621

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             LGA VS  +S+KT ++I G+  GSKL KA +LG+ +++E + + LL+
Sbjct: 622 VALGAKVSGSVSKKTHLVIAGEAAGSKLAKANELGIPVIDENELIRLLE 670


>gi|165923886|ref|ZP_02219718.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 334]
 gi|165916671|gb|EDR35275.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 334]
          Length = 670

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 247/709 (34%), Positives = 388/709 (54%), Gaps = 46/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + +K +  L QEI+ H+  YY  S+P I DS YD L      +   +P+   +  P+ 
Sbjct: 4   PAKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSS 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E       V H IP LSL+ +++ + LR F  RI +    K D    +  EPK
Sbjct: 61  PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRL--KLDKPFEYVCEPK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV 
Sbjct: 119 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + +  F   N E    G K +ANPRNAASG LR+L+P     R L F+ + +G       
Sbjct: 179 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 238

Query: 252 K-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   
Sbjct: 239 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG +TPVARLEPV++ G  ++N
Sbjct: 299 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSN 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D +             +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    
Sbjct: 359 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 407

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C + V++          A  RC GGL C AQ  E +KHF SR A +IEGLG + 
Sbjct: 408 PSRCPVCHAEVIKPEGE------AVARCMGGLYCRAQLRESIKHFASRRALDIEGLGDKL 461

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F + +     I+    I+ L++      + I  +   G+ S  NL  +I K +  +L
Sbjct: 462 VELFIQEK----LIKDITGIYQLKK------SAITALPRMGEKSAENLLTAIEKSKKTTL 511

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   AR+LA+++       +              +L  +  +G ++A+
Sbjct: 512 PRFLYALGIRGVGDTTARTLARHFHELDLLMKA----------SIETLQEIRDIGPVVAE 561

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I  F+    N   +  L+  +     + +  V SEI  K  V TG L+ + R +A+E +
Sbjct: 562 NIHAFFHQKHNAELINKLI-HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 620

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 621 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 669


>gi|270262950|ref|ZP_06191221.1| DNA ligase, NAD-dependent [Serratia odorifera 4Rx13]
 gi|270043634|gb|EFA16727.1| DNA ligase, NAD-dependent [Serratia odorifera 4Rx13]
          Length = 673

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 239/713 (33%), Positives = 396/713 (55%), Gaps = 50/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P + D+EYD L      + +A P+L  +   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMNELRELENAHPELITA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R+      K    + F  E K
Sbjct: 58  PTQRVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRL--KSSEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE++++ +R I  IP  LS +  P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLSGDNIPRRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N+E      K +ANPRNAA+G +R+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQMNEEARRKDGKIFANPRNAAAGSIRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +  ++ L + +  G PV++  +       ++++Y +++  R+ L +DIDG+V K+D+  
Sbjct: 236 PRSHWQRLMQFKNWGLPVSDRAKCCTGSDEVLAFYRQVEQDRAQLGFDIDGVVVKIDDID 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  AR+PRW  + KF  ++  T + +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQETLGFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIPKVV +I + R  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPKVVGVIEDRRPQDAREIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S V R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PLHCPVCGSDVERVEGE------AVTRCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + E     ++ PAD+F L      S   +  +   G  S  NL +++ K +  + 
Sbjct: 459 IEQLVEKE----YVKNPADLFRL------SAGILTGLDRMGPKSAQNLVNALEKSKRTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++                   D  +L +VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFGELPKLYAA----------DIDALKQVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRH----EKNVSSEIENKKLVFTGTLQKIQRHK 665
            +  F     N   ++ L+  E+  +         + + S    K +V TG+L ++ R +
Sbjct: 559 HVRHFLDEELNQKVIDELIGAEIGINWPEVVVVAAEEIDSPFAGKTVVLTGSLSQLSRDE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 AKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIAVIDEAEMIRLL 671


>gi|219850499|ref|YP_002464932.1| DNA ligase, NAD-dependent [Chloroflexus aggregans DSM 9485]
 gi|254781282|sp|B8GAC1|DNLJ_CHLAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219544758|gb|ACL26496.1| DNA ligase, NAD-dependent [Chloroflexus aggregans DSM 9485]
          Length = 681

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 263/722 (36%), Positives = 385/722 (53%), Gaps = 55/722 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++     + ++ L   I  +D  YY    PI+ D+EYDAL     A+  A P+L     P
Sbjct: 1   MNHIDVTQRINELRTLIRRYDYHYYVLDDPIVSDAEYDALMNELRALEAAHPELI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G       KV H  P LSL   +   DL  +  R+ R   +  D ++ + +E
Sbjct: 58  DSPTQRVSGTPASQFAKVQHPQPMLSLGNAFTTTDLLAWRDRVLRLLGQ--DTAVAYVVE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI------- 184
           PKIDG  + + Y  G+FV  A RGDG  GEDV+A +R I +IP +L              
Sbjct: 116 PKIDGLAVALTYHDGQFVQGATRGDGEVGEDVTANLRTISSIPLLLHPPDGGHDRDVPTA 175

Query: 185 ----IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
               IEVRGEVY+   DF ALND + A G K +ANPRNAA+G LR+ +P     R L FF
Sbjct: 176 LPSLIEVRGEVYMRTADFEALNDRLAAAGEKIFANPRNAAAGSLRQKDPAITAARPLRFF 235

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +G+G    +   GQ++ L+ +R LGFPVN  VR+   F  +++Y  +  + R  L Y+ 
Sbjct: 236 AYGVGPVEGVELTGQWQTLRYLRMLGFPVNQDVRRFTDFDEVLAYCEQWMARRDELTYEA 295

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V K+D+F+ Q++LG   R PRW I+ KF  ++A TRLL+I + +GRTG++TP A LE
Sbjct: 296 DGMVIKIDDFAQQRELGVVGRDPRWAIAFKFPPREAITRLLNITVNVGRTGVVTPNAELE 355

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV IGG ++ NA+LHN DYI             RDIR+GD V+VKRAG+VIP VV  +V 
Sbjct: 356 PVQIGGVIVRNASLHNADYI-----------AQRDIRIGDYVIVKRAGDVIPYVVGPVVA 404

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R    +P+ FP+ CP C S + R+         AA RC     C AQ + RL+HF SR 
Sbjct: 405 RRDGSERPWQFPTHCPACGSPLEREPGE------AAWRCNNFGICPAQLVRRLEHFASRA 458

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +I GLG++Q + F +       +R  AD+F L+            + GFG   + NL 
Sbjct: 459 ALDIVGLGERQAELFVQR----GLVRDVADLFYLKAEDFAG------LEGFGPKRIANLL 508

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           ++I+  R   L+R I  LGIR+VG+  A++L     S                     L 
Sbjct: 509 NAIDAARQRPLDRLIVGLGIRYVGSVAAQALVNSLGSLDAIMNARQ----------EELE 558

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS-IGRHEKNVSSEIENKKLVFTGTL 658
           ++P +G ++A +IV+F+ +P N   +E L         G   +  S  +  +  V TGTL
Sbjct: 559 QIPGIGPVVAASIVDFFAHPENRQLIEKLRAAGVQMNAGPQRERKSDVLAGQTFVLTGTL 618

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R +A   +   G  V+  +S+KT+ ++ G N GSKL KAQQLG+ +++E   L L+
Sbjct: 619 PSLTREQASALIIAHGGKVTDSVSKKTNYVVAGVNAGSKLAKAQQLGIPVLDEAALLALI 678

Query: 719 QQ 720
            +
Sbjct: 679 GE 680


>gi|295401729|ref|ZP_06811695.1| DNA ligase, NAD-dependent [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294976216|gb|EFG51828.1| DNA ligase, NAD-dependent [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 670

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 252/717 (35%), Positives = 391/717 (54%), Gaps = 53/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A K +  L + ++ ++  YY   +P + DSEYD L +   A+   +PDL      
Sbjct: 1   MERQAAIKRIEELRELLNQYNYEYYVLDRPSVPDSEYDRLMQELIALEEQYPDLK---TK 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+   +  KV H  P LSL   +N  DLR F  R+     ++  + + +  E
Sbjct: 58  DSPSQRVGGQALDAFQKVEHRTPMLSLANAFNEGDLRDFDRRVR----QEVGDDVAYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L+  +   +E RGE 
Sbjct: 114 LKIDGLAVSVRYEDGYFVQGATRGDGVTGEDITENLKTIRSLPLRLNEPV--TLEARGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F  LN++    G + +ANPRNAA+G LR+L+P    +R+L+ FV+GL    E+ 
Sbjct: 172 YMPKASFERLNEQRRQRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYGLANAEELG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L  ++ LGF  N   R+      ++ + NE +  R  LPY+IDG+V KVD F+
Sbjct: 232 IASHSAALDYLQQLGFKTNPERRRCANMDEVMQFVNEWQEKRPQLPYEIDGIVIKVDSFA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  A+SPRW I++KF  ++  T+L+DI++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 QQEQLGATAKSPRWAIAYKFPAEEVVTKLIDIELNVGRTGVVTPTAILEPVRVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED+I+            +DIR+GD V++K+AG++IP+VV+++ + R  +  PF  
Sbjct: 352 ATLHNEDFIR-----------EKDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR A NIEGLG++ 
Sbjct: 401 PTHCPECASELVRIEGE------VALRCINPK-CPAQIREGLIHFVSRQAMNIEGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       I   ADI+ L + Q         +   G+ S TNL  +I   +  SL
Sbjct: 454 ISQLFRE----GLIHDVADIYRLTKDQLID------LERMGEKSATNLLHAIEASKQNSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ A+ LA+++ +                     L+ +  +G+ +A 
Sbjct: 504 ERLLFGLGIRHVGAKAAKVLAEHFETMDRLQNATK----------EELMAIHEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-----VSSEIENKKLVFTGTLQKIQRHK 665
           +IV ++  P     +  L         +  K      V S    K +V TG L+ + R++
Sbjct: 554 SIVTYFAKPEVKELLNELRAYGVNMEYKGPKTPKPGDVHSYFAGKTVVLTGKLESLSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+E + QLG  V+  +S+ TD++I G + GSKL KAQQL ++I +E +FL  ++Q  
Sbjct: 614 AKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLHIEIWDETRFLEEIEQSK 670


>gi|290476106|ref|YP_003469005.1| DNA ligase [Xenorhabdus bovienii SS-2004]
 gi|289175438|emb|CBJ82241.1| DNA ligase [Xenorhabdus bovienii SS-2004]
          Length = 672

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 247/714 (34%), Positives = 397/714 (55%), Gaps = 49/714 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L R    +    P+L  +   + 
Sbjct: 1   MESIIEKINKLRATLRHHEYLYHVMDAPEIPDAEYDRLLRELKVLEEQHPELITA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H IP LSL+ +++ E    F  R+      KD   + F  E K
Sbjct: 58  PTQRVGAAPLTAFGQVRHEIPMLSLDNVFDEESYLAFDKRVRDRL--KDSRDLVFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++  +R I  IP  L  N  P  +E+RGEV+
Sbjct: 116 LDGLAVSLLYEDGELVQAATRGDGTTGENITVNVRTIHAIPLRLKGNNIPARVEIRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  LNDE    G K +ANPRNAA+G LR+L+P     R L F+ +G+G       
Sbjct: 176 MKQGGFEKLNDEARRKGNKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               YE L + +  G PV++ V+       ++ +Y+ ++  R  L +DIDG+V KVD   
Sbjct: 236 PASHYERLMQFKQWGLPVSDNVKLCQGTQQVIDFYHNIEQQRPILGFDIDGIVIKVDSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A++PRW  + KFA ++  T + D++ Q+GRTG +TPVARL+PV + G +++N
Sbjct: 296 LQETLGFVAKAPRWATAFKFAAQEQMTIVRDVEFQVGRTGAITPVARLKPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+++RAG+VIPKVV ++ ++R  ++Q   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVVIRRAGDVIPKVVGVVQDKRPAESQEVIF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P +CP+C+S + R          +  RCTGGL C AQ+ E LKHFVSR A +++G+G++ 
Sbjct: 405 PEYCPVCRSDIERVEGE------SVARCTGGLFCGAQRKEALKHFVSRRAMDVDGMGEKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     ++ PAD+F L      S  K+  +   G  S  N  D++ K +  + 
Sbjct: 459 IEQLVDKE----YVKTPADLFRL------SAGKLTGLERMGPKSAQNTIDALEKSKKTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI+SLGIR VG   A +L  ++++ +               D  +LI V  VG ++A 
Sbjct: 509 ARFIYSLGIREVGEATAANLVAHFVTLEKLRAA----------DTEALIAVQDVGGVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKA 666
            +V F+  P N   ++ L+  +       E      V +    K +V TG+L ++ R +A
Sbjct: 559 HVVNFFNEPHNQTVIDDLIDNIGIYWESVETLQSDTVGNSFAGKTVVLTGSLNRLSRDEA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ +T LGA V+  +S+KTD++I G+  GSKL KA +LG+++++EE+ L LL +
Sbjct: 619 KDKLTALGAKVTGSVSKKTDLVIAGEAAGSKLAKATELGIEVIDEEEMLRLLGE 672


>gi|209364099|ref|YP_001424866.2| NAD-dependent DNA ligase [Coxiella burnetii Dugway 5J108-111]
 gi|207082032|gb|ABS76887.2| NAD-dependent DNA ligase [Coxiella burnetii Dugway 5J108-111]
          Length = 673

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 248/709 (34%), Positives = 390/709 (55%), Gaps = 46/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + +K +  L QEI+ H+  YY  S+P I DS YD L      +   +P+   +  P+ 
Sbjct: 7   PAKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSS 63

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E       V H IP LSL+ +++ + LR F  RI +    K D    +  EPK
Sbjct: 64  PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRL--KLDKPFEYVCEPK 121

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV 
Sbjct: 122 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 181

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + +  F   N E    G K +ANPRNAASG LR+L+P     R L F+ + +G       
Sbjct: 182 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 241

Query: 252 K-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   
Sbjct: 242 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG++TPVARLEPV++ G  ++N
Sbjct: 302 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGVVTPVARLEPVSVSGVTVSN 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D +             +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    
Sbjct: 362 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 410

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C + V++          A  RC GGL C AQ  E +KHF SR A +IEGLG + 
Sbjct: 411 PSRCPVCHAEVIKPEGE------AVARCVGGLYCRAQLRESIKHFASRRALDIEGLGDKL 464

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F + +     I+    I+ L++      + I  +   G+ S  NL  +I K +  +L
Sbjct: 465 VELFIQEK----LIKDITGIYQLKK------SAITALPRMGEKSAENLLTAIEKSKKTTL 514

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG  IAR+LA+++       +              +L  +  +G ++A+
Sbjct: 515 PRFLYALGIRGVGDTIARTLARHFHELDLLMKA----------SIETLQEIRDIGPVVAE 564

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I  F+    N   +  L+  +     + +  V SEI  K  V TG L+ + R +A+E +
Sbjct: 565 NIHAFFHQKHNAELINKLI-HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 623

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 624 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 672


>gi|312112463|ref|YP_003990779.1| DNA ligase, NAD-dependent [Geobacillus sp. Y4.1MC1]
 gi|311217564|gb|ADP76168.1| DNA ligase, NAD-dependent [Geobacillus sp. Y4.1MC1]
          Length = 670

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 252/717 (35%), Positives = 391/717 (54%), Gaps = 53/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A K +  L + ++ ++  YY   +P + DSEYD L +   A+   +PDL      
Sbjct: 1   MERQAAIKRIEELRELLNQYNYEYYVLDRPSVPDSEYDRLMQELIALEEQYPDLK---TK 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+   +  KV H  P LSL   +N  DLR F  R+     ++  + + +  E
Sbjct: 58  DSPSQRVGGQALDAFQKVEHRTPMLSLANAFNEGDLRDFDRRVR----QEVGDDVAYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L+  +   +E RGE 
Sbjct: 114 LKIDGLAVSVRYEDGYFVQGATRGDGVTGEDITENLKTIRSLPLRLNEPV--TLEARGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F  LN++    G + +ANPRNAA+G LR+L+P    +R+L+ FV+GL    E+ 
Sbjct: 172 YMPKASFERLNEQRRQRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYGLANAEELG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L  ++ LGF  N   R+      ++ + NE +  R  LPY+IDG+V KVD F+
Sbjct: 232 IASHSAALDYLQQLGFKTNPERRRCANMDEVIQFVNEWQEKRPQLPYEIDGIVIKVDSFA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  A+SPRW I++KF  ++  T+L+DI++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 QQEQLGATAKSPRWAIAYKFPAEEVVTKLIDIELNVGRTGVVTPTAILEPVRVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED+I+            +DIR+GD V++K+AG++IP+VV+++ + R  +  PF  
Sbjct: 352 ATLHNEDFIR-----------EKDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR A NIEGLG++ 
Sbjct: 401 PTHCPECASELVRIEGE------VALRCINPK-CPAQIREGLIHFVSRQAMNIEGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       I   ADI+ L + Q         +   G+ S TNL  +I   +  SL
Sbjct: 454 ISQLFRE----GLIHDVADIYRLTKDQLID------LERMGEKSATNLLHAIEASKQNSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ A+ LA+++ +                     L+ +  +G+ +A 
Sbjct: 504 ERLLFGLGIRHVGAKAAKVLAEHFETMDRLQNATK----------EELMAIHEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-----VSSEIENKKLVFTGTLQKIQRHK 665
           +IV ++  P     +  L         +  K      V S    K +V TG L+ + R++
Sbjct: 554 SIVTYFAKPEVKELLNELRAYGVNMEYKGPKTPKPGDVHSYFAGKTVVLTGKLESLSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+E + QLG  V+  +S+ TD++I G + GSKL KAQQL ++I +E +FL  ++Q  
Sbjct: 614 AKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLHIEIWDETRFLEEIEQSK 670


>gi|39995996|ref|NP_951947.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens PCA]
 gi|81702997|sp|Q74ER9|DNLJ_GEOSL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|39982761|gb|AAR34220.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens PCA]
 gi|298505011|gb|ADI83734.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens KN400]
          Length = 670

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 249/711 (35%), Positives = 380/711 (53%), Gaps = 44/711 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A   +++L  E+  H+  YY   +P I D+EYD L R    +   FPDLA    P
Sbjct: 1   MDKQTAADRVAALRTELERHNRLYYAEDRPEITDAEYDLLFRELVDLETRFPDLAA---P 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       +VTH IP LSLE  +   ++  F  R+ RF     D  I +  E
Sbjct: 58  DSPTQRVGGAPLDKFEQVTHRIPMLSLENAFTDVEIADFDDRVKRFLGLHGDVEIDYVCE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  + + YE+G     + RGDG  GE+V+  ++ +  IP        PE++EVRGE
Sbjct: 118 PKMDGLAVELVYERGILTVGSTRGDGVVGENVTHNLKTVRGIPLRLRCEQPPELLEVRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249
           VY+    F  LN +    G  P+ANPRNAA+G +R+L+      R L  F +  G+    
Sbjct: 178 VYLPLAAFQRLNAQREEEGEPPFANPRNAAAGSIRQLDSRITARRPLAIFCYAPGEVRGA 237

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q E L ++   G PVN  +R       I++YY EM   R +LPY+IDG+V KVD F
Sbjct: 238 SFAAQTEFLDRIGEWGLPVNPLIRPVKGVAEILAYYREMTERRDSLPYEIDGVVVKVDSF 297

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LGE++RSPRW ++ KF  +QA T + DI   +GRTG++TP A L PV + G  ++
Sbjct: 298 ALQRELGEKSRSPRWAVAVKFPPRQAVTVVEDIVPSVGRTGVITPTANLRPVEVSGVTVS 357

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN + ++            +DIR+GD V+++RAG+VIP VV ++  +R    +P  
Sbjct: 358 RATLHNWEEMER-----------KDIRIGDTVVIERAGDVIPAVVKVLTEKRSGSERPLP 406

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S VV+  +    +         GL+C AQ  E + HF SRDA ++EGLG++
Sbjct: 407 IPAVCPECGSEVVKIPDEVAVR-------CMGLSCPAQIRESIIHFASRDAMDMEGLGEK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   +       ++  AD++TL + Q             GD    NL ++I   +   
Sbjct: 460 YIEQLLR----LGLVKNVADLYTLTKDQFMQF------DRMGDKLAENLLNAIEASKQRE 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFIF+LGIRHVG   A+ LA  + S +N  +               L+ +  VG  +A
Sbjct: 510 LSRFIFALGIRHVGEHTAKLLAGAFGSIENLERATE----------EELLSIREVGPQVA 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++I+ F++N  N   +  + K         EK V      K  VFTG L +  R +AQ+ 
Sbjct: 560 RSIITFFRNEGNRETIRRMFKAGVRPTAE-EKKVGGRFTGKTFVFTGALTRFSRPEAQKM 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           V + G   +  +S+KTD ++ G   GSKL+KA+QLGV+++ E++FL +L++
Sbjct: 619 VEKEGGHAAGSVSKKTDYVVAGAEAGSKLDKARQLGVRVLTEDEFLAMLEE 669


>gi|206895761|ref|YP_002246502.1| DNA ligase, NAD-dependent [Coprothermobacter proteolyticus DSM
           5265]
 gi|254781298|sp|B5Y6V5|DNLJ_COPPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206738378|gb|ACI17456.1| DNA ligase, NAD-dependent [Coprothermobacter proteolyticus DSM
           5265]
          Length = 666

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 219/714 (30%), Positives = 368/714 (51%), Gaps = 52/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+A+K +  L + I YH+  YY    P I D EYD L R    +   FP+      P
Sbjct: 1   MTREEAKKRIERLRELIEYHNYRYYVLDSPEISDEEYDKLYRELVTLEKQFPEFI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G         VTH +P LSL+  +  ++++ F  R+     +     + +  E
Sbjct: 58  DSPTQRVGAPPAKEFATVTHEVPMLSLDNAFTEDEIKAFDQRVRSALNQ---QHVEYFCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190
            K+DG  +++ YE G FV  + RG+G+ GEDV+A ++ I TIP  L     P ++E+RGE
Sbjct: 115 HKLDGLAVSLLYENGLFVRGSTRGNGYVGEDVTANLKTIKTIPLRLKGENIPPVVEIRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            ++   DF ALN++  A+G+  +ANPRNAA+G +R+L+ +    R L F  +G G    +
Sbjct: 175 AFMMLRDFEALNEQRQALGQPLFANPRNAAAGSIRQLDSSITAQRKLYFMPYGFGLVQGM 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             + Q   L++ +  GF +N   R+A++    + +       R  LP+  DG+V KV+  
Sbjct: 235 DFETQERFLKQCQEWGFRINEHNRKASSIEEALEFIRYWTEHRVELPFPADGVVIKVNNL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
                LG  A +PR+ I++KF  ++  T+L D+  Q+GRTGI+TPVA LEPV + GA ++
Sbjct: 295 RYWDILGTTAHAPRYAIAYKFPAEEKETKLKDVVFQVGRTGIITPVAMLEPVVLDGATVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN D ++ L           D+R GD V +KRAG VIP+++ +   +R    +   
Sbjct: 355 RATLHNFDIVRQL-----------DVRKGDVVKLKRAGMVIPEIIGVAAEKRTGKEEQIE 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C      D          A+     + C AQ    L H+ SRDA +I+GLG+ 
Sbjct: 404 PPTTCPVCGGPTEWDG---------AYLKCVNITCPAQLKGHLLHWASRDAMDIDGLGES 454

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++           ++  AD++ L      S   +  +      S T LY++I + ++  
Sbjct: 455 IIENLVD----MGLVKNIADLYKL------SVQDLLTLPRLAQRSATKLYENIQRSKDRP 504

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             R ++ LGI  VG + A+ LA+++ S                     L  +  +G   A
Sbjct: 505 FFRVLYGLGIPRVGLKTAQMLAEHFGSINALLNAT----------MDELTSIEGIGTDTA 554

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           + I++  Q+P+    ++ L           ++++   ++    VFTGTL  + R  A + 
Sbjct: 555 ETILKALQSPQVHELIDQLKTLGLKM---EQESIEGPLKGLTFVFTGTLTSMSRGDAAKL 611

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ-QYN 722
           V  LG  V++ +S+  D ++VG++PGSKL+KAQ+LG+ I++EE FL +++ ++N
Sbjct: 612 VQSLGGKVASSVSKNVDYVVVGEDPGSKLDKAQKLGLTIIDEEAFLKMVKREHN 665


>gi|190359248|sp|A9KCS0|DNLJ_COXBN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 670

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 248/709 (34%), Positives = 390/709 (55%), Gaps = 46/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + +K +  L QEI+ H+  YY  S+P I DS YD L      +   +P+   +  P+ 
Sbjct: 4   PAKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSS 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E       V H IP LSL+ +++ + LR F  RI +    K D    +  EPK
Sbjct: 61  PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRL--KLDKPFEYVCEPK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV 
Sbjct: 119 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + +  F   N E    G K +ANPRNAASG LR+L+P     R L F+ + +G       
Sbjct: 179 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 238

Query: 252 K-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   
Sbjct: 239 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG++TPVARLEPV++ G  ++N
Sbjct: 299 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGVVTPVARLEPVSVSGVTVSN 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D +             +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    
Sbjct: 359 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 407

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C + V++          A  RC GGL C AQ  E +KHF SR A +IEGLG + 
Sbjct: 408 PSRCPVCHAEVIKPEGE------AVARCVGGLYCRAQLRESIKHFASRRALDIEGLGDKL 461

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F + +     I+    I+ L++      + I  +   G+ S  NL  +I K +  +L
Sbjct: 462 VELFIQEK----LIKDITGIYQLKK------SAITALPRMGEKSAENLLTAIEKSKKTTL 511

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG  IAR+LA+++       +              +L  +  +G ++A+
Sbjct: 512 PRFLYALGIRGVGDTIARTLARHFHELDLLMKA----------SIETLQEIRDIGPVVAE 561

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I  F+    N   +  L+  +     + +  V SEI  K  V TG L+ + R +A+E +
Sbjct: 562 NIHAFFHQKHNAELINKLI-HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 620

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 621 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 669


>gi|212212963|ref|YP_002303899.1| NAD-dependent DNA ligase [Coxiella burnetii CbuG_Q212]
 gi|254781302|sp|B6J1C6|DNLJ_COXB2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|212011373|gb|ACJ18754.1| NAD-dependent DNA ligase [Coxiella burnetii CbuG_Q212]
          Length = 677

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 247/709 (34%), Positives = 387/709 (54%), Gaps = 46/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + +K +  L QEI+ H+  YY  S+P I DS YD L      +   +P+   +  P+ 
Sbjct: 7   PAKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSS 63

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E       V H IP LSL+ +++ + LR F  RI +    K D    +  EPK
Sbjct: 64  PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRL--KLDKPFEYVCEPK 121

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV 
Sbjct: 122 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 181

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + +  F   N E    G K +ANPRNAASG LR+L+P     R L F+ + +G       
Sbjct: 182 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 241

Query: 252 K-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   
Sbjct: 242 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG +TPVARLEPV++ G  ++N
Sbjct: 302 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSN 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D +             +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    
Sbjct: 362 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 410

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C + V++          A  RC GGL C AQ  E +KHF SR A +IEGLG + 
Sbjct: 411 PSRCPVCHAEVIKPEGE------AVARCVGGLYCRAQLRESIKHFASRRALDIEGLGDKL 464

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F + +     I+    I+ L++      + I  +   G+ S  NL  +I K +  +L
Sbjct: 465 VELFIQEK----LIKDITGIYQLKK------SAITALPRMGEKSAENLLTAIEKSKKTTL 514

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   AR+LA+++       +              +L  +  +G + A+
Sbjct: 515 PRFLYALGIRGVGDTTARTLARHFHELDLLMKA----------SIETLQEIRDIGPVAAE 564

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I  F+    N   +  L+  +     + +  V SEI  K  V TG L+ + R +A+E +
Sbjct: 565 NIHAFFHQKHNAELINKLI-HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 623

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 624 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 672


>gi|304392246|ref|ZP_07374188.1| DNA ligase, NAD-dependent [Ahrensia sp. R2A130]
 gi|303296475|gb|EFL90833.1| DNA ligase, NAD-dependent [Ahrensia sp. R2A130]
          Length = 716

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 309/718 (43%), Positives = 454/718 (63%), Gaps = 12/718 (1%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           R+++P   L+ EQA +EL++L  EI+ HD  Y+    P I D  YD L++R  AI   FP
Sbjct: 7   REIVP-RKLTDEQAAEELAALASEIAEHDARYHNDDAPTISDGAYDTLRKRNTAIEERFP 65

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           DL R    + P N +G  +     K+TH +P LSL+  ++  D+  F   + RF   K+ 
Sbjct: 66  DLVRE---DSPSNNVGSPVQSKFDKITHKVPMLSLDNAFDDGDVADFSASVRRFLNWKEG 122

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIP 182
           + + FT EPKIDG  + +RYE+G+ V AA RGDG  GE+V+A  R +  IPR     N+P
Sbjct: 123 DPLTFTAEPKIDGLSLALRYERGELVSAATRGDGQVGENVTANARTVKDIPRKLSGGNVP 182

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH 241
           +I+E+RGEVYI K DF ALN EM A G++ Y NPRN A+G LR+L+     +R L FF +
Sbjct: 183 DIVEIRGEVYIGKADFAALNVEMEAAGKQLYVNPRNTAAGSLRQLDSRITASRPLKFFAY 242

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             G+ S++ A  Q+ M+++M   GF  N    +  +   +V++Y  ++  R+ L YDIDG
Sbjct: 243 AWGEMSKLPADTQFAMIEQMAAWGFSTNPLTARLESVEALVAHYRTIEESRAGLDYDIDG 302

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKVD+  LQ +LG  +R PRW I+HKF  + A+T L +I+IQIGRTG L+PVARL+PV
Sbjct: 303 VVYKVDDLGLQGRLGFASRVPRWAIAHKFPAELATTILREIEIQIGRTGALSPVARLDPV 362

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG +++NATLHNEDYI G+ ++G+ +R GRD+R+GD V + RAG+VIPKV+D+ +++R
Sbjct: 363 TVGGVVVSNATLHNEDYIAGVGSNGEPIREGRDLRIGDTVTIFRAGDVIPKVMDVDLSKR 422

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
                PF FP+ CP C S  VR ++ KTG+  +  RCTGG  C AQ +E +KHFVSR+AF
Sbjct: 423 TAKE-PFEFPTVCPACGSPAVRPIDEKTGRADSVRRCTGGFICPAQAVEGIKHFVSRNAF 481

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I+G G +Q + F +       +  PADIFTL+ R + S  ++EN  G+G  S   L+D+
Sbjct: 482 DIDGFGDKQAELFHE----LGMVMNPADIFTLRERDKRSLKRLENRDGYGKTSANKLFDA 537

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I+ RR I L RFIF+LGIRHVG   A+ LA++Y         I+       + W+ ++ +
Sbjct: 538 IDDRRKIDLHRFIFALGIRHVGEGNAKLLARHYRDADTLLAAIDAAQDREGEAWVEMLDI 597

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
              G+  A A+++F  +P     V+ALL EV+P+    +   SS I  K +VFTGTL++ 
Sbjct: 598 DGFGETAATALLDFMADPNRRGVVDALLTEVTPNP-VEQVASSSPIAGKTIVFTGTLEQT 656

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R +A+    +LGA VS  +S KTD+++ G+  GSKL+KA +LGV  ++E+ +L L+ 
Sbjct: 657 TRSEAKAVAERLGAKVSGSVSAKTDLLVAGEKAGSKLKKAAELGVDTLDEQGWLDLVA 714


>gi|237732406|ref|ZP_04562887.1| NAD-dependent DNA ligase LigA [Citrobacter sp. 30_2]
 gi|226907945|gb|EEH93863.1| NAD-dependent DNA ligase LigA [Citrobacter sp. 30_2]
          Length = 671

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L      +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMCELRELEAQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K  + + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSTDKLTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-IIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +     +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF- 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGVL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   +++YY++++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKEWGLPVSDRVTLCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSMV 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPDDTREIEF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCNSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+FTL         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFTLTA------GKLTGLDRMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA ++ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEALEAA----------SIEELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL +       +  + + + S    K +V TG+L  + R  A+
Sbjct: 559 HVFNFFAEESNREVIVQLLAQGIHWPAPVVINAEEIDSPFAGKTVVLTGSLSLMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +T+LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEMIRLL 669


>gi|127513305|ref|YP_001094502.1| DNA ligase, NAD-dependent [Shewanella loihica PV-4]
 gi|166216242|sp|A3QFJ5|DNLJ_SHELP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|126638600|gb|ABO24243.1| DNA ligase, NAD-dependent [Shewanella loihica PV-4]
          Length = 669

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 252/711 (35%), Positives = 397/711 (55%), Gaps = 50/711 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  + E+  L  E++ H+  YY    P I D+EYD L RR   +    P+LA +   + 
Sbjct: 1   MQAIQDEIKQLTDELNQHNYRYYVDDAPSIPDAEYDRLMRRLQELEAEHPELALA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE      +VTH  P LSL+ +++ E+   F  R+      K  ++  F  EPK
Sbjct: 58  PTQRVGGEALSKFNQVTHLKPMLSLDNVFSEEEFNAFYKRV----GDKLPDTPAFCCEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  ++I Y  G F  AA RGDG  GED++  +R I ++P  L  +  P ++EVRGEV+
Sbjct: 114 LDGLAVSILYRDGVFERAATRGDGTVGEDITENVRTIKSVPLRLRGSGFPPLLEVRGEVF 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + K  F A+ND+  A G K + NPRNAA+G LR+L+     +R L F+ + LG       
Sbjct: 174 MPKAAFEAVNDKARAKGEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPETW 233

Query: 252 K---GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 +E L +++  G PV++ V+       +++YY ++ + RS L Y+IDG+V KV++
Sbjct: 234 PLAASHFEQLVQLKEWGCPVSSEVKVCADIPSVLAYYQDILTRRSELAYEIDGVVLKVND 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q+ LG  A++PRW  ++KF  ++  T+L  +D Q+GRTG +TPVARL+PV +GG  +
Sbjct: 294 IAQQQTLGFVAKAPRWATAYKFPAQEEITQLEGVDFQVGRTGAVTPVARLQPVFVGGVTV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            + +GD V+++RAG+VIP+VV ++  +R  DAQ  
Sbjct: 354 SNATLHNADEIARL-----------GVMIGDSVIIRRAGDVIPQVVAVVPEKRPSDAQAI 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP+C S V R          A  RCTGGL C AQ+ E +KHF SR A +I+G+G 
Sbjct: 403 QFPPQCPVCGSDVERVEGE------AVARCTGGLVCEAQRKEAIKHFASRKALDIDGMGD 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L        + I  +   G  S TNL +++   +  
Sbjct: 457 KVVEQLIDKE----LVASPADLFKLTA------SAITMLDRMGMKSATNLVNALEAAKQT 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF++SLGIR VG   A +LA Y+ + ++  Q           D  + ++V  VG I+
Sbjct: 507 TFARFLYSLGIREVGEATAANLANYFKTLEHLKQA----------DAETFMKVDDVGVIV 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQ 667
           AQ +V F++ P N+  ++ LL+         E    +  ++ +  V TGTL ++ R+ A+
Sbjct: 557 AQHLVHFFEQPHNLEVIDGLLQAGVHWPDIEEVAEEALSLKGQTWVLTGTLTQLNRNDAK 616

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+++E + L +L
Sbjct: 617 AKLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQELGVKVIDEAELLAIL 667


>gi|311694426|gb|ADP97299.1| NAD-dependent DNA ligase [marine bacterium HP15]
          Length = 678

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 245/716 (34%), Positives = 385/716 (53%), Gaps = 47/716 (6%)

Query: 12  LSIE--QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +S       + +  L   I  H+  YY    P + D+EYD L R    +   +P+LA   
Sbjct: 1   MSKATPDIIQRVEELRSAIDDHNYRYYVLDDPRVPDAEYDRLFRELQGLETDYPELA--- 57

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
               P  ++G     S  +V H +P LSL+  ++ ++LR F  R+       +D  + + 
Sbjct: 58  SDTSPTRRVGSAAETSFEEVVHRLPMLSLDNAFSEDELRDFDRRVKDRLGITED--VEYV 115

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVR 188
            EPK+DG  +++ YE G    AA RGDG+SGED++A IR IP++P  L  +  P+++EVR
Sbjct: 116 CEPKLDGLAVSLHYENGALTTAATRGDGYSGEDITANIRTIPSVPLKLRGDDVPDLVEVR 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+ K+ F  LN  +   G K + NPRNAA+G LR+   T    R L    + +  T 
Sbjct: 176 GEVYMPKDGFEQLNRRLAERGEKTFVNPRNAAAGSLRQKKSTVTARRPLEMCAYSVAVTD 235

Query: 248 E-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           E +    Q+E L++++  GF +N  +R+A      +  Y+E+   R  LPY+IDG+V+KV
Sbjct: 236 ESLLPDTQWEGLKRVQSWGFRINPEMRKARGAEECLEAYSELMDKRDGLPYEIDGIVFKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +    QK LG  +R+PRW I+ KF  ++  T + D++ Q+GRTG +TPVARL+PV +GG 
Sbjct: 296 NRLDQQKALGFVSRAPRWAIAQKFPAQEELTVIEDVEFQVGRTGAVTPVARLKPVFVGGV 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN D I+ L           D+ +GD V ++RAG+VIP+VV ++  +R   A+
Sbjct: 356 TVSNATLHNMDEIRRL-----------DVHIGDTVFIRRAGDVIPQVVKVVAEKRPSGAR 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S V++          A  RC+GGL C AQ+ E ++H+ SR A +IEGL
Sbjct: 405 EVELPRQCPVCDSDVIQIEGE------AVARCSGGLFCPAQRKEAIRHYASRKALDIEGL 458

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D           +   AD++ L             +   G+ S  NL  +I++ R
Sbjct: 459 GDKWIDIMVDQ----GMVETVADLYRLTTDDLVK------LERMGEKSAANLVAAIDRAR 508

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           N  L RF+++LGIR VG   A++LA ++ + +  A            D  SL  VP VG 
Sbjct: 509 NPVLWRFLYALGIREVGEATAKALAGHFGTLEAIAAA----------DEESLQTVPDVGP 558

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I+A  I  F++   N   ++AL +          +     ++ +  V TGTL  + R +A
Sbjct: 559 IVAGHIRSFFEQTHNRETLDALREAGVRWQEEEVREGEKPLKGQTWVLTGTLSGMTRDEA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +E +  LGA V+  +S+KT  ++ G+  GSKL KA+QL V +++E   + LL+++ 
Sbjct: 619 KEKLESLGAKVAGSVSKKTACVVAGEAAGSKLAKAEQLEVPVLDEAGLVALLEEHG 674


>gi|163845839|ref|YP_001633883.1| DNA ligase [Chloroflexus aurantiacus J-10-fl]
 gi|222523550|ref|YP_002568020.1| DNA ligase, NAD-dependent [Chloroflexus sp. Y-400-fl]
 gi|190359243|sp|A9WCA1|DNLJ_CHLAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781286|sp|B9LHI6|DNLJ_CHLSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|163667128|gb|ABY33494.1| DNA ligase, NAD-dependent [Chloroflexus aurantiacus J-10-fl]
 gi|222447429|gb|ACM51695.1| DNA ligase, NAD-dependent [Chloroflexus sp. Y-400-fl]
          Length = 709

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 266/720 (36%), Positives = 375/720 (52%), Gaps = 55/720 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S       ++ L   I  +D  YY    PI+ D+EYDAL     A+  A P+L     P
Sbjct: 1   MSHTTVADRINELRSLIRRYDYHYYVLDDPIVSDAEYDALMTELRALEAAHPELI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G       KV H  P LSL   +   DL  +  R+ R      D  + + +E
Sbjct: 58  DSPTQRVSGTPASQFAKVQHPQPMLSLGNAFTKADLLAWRDRVLRLLG--PDAIVAYVVE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-----------RVLSLN 180
           PKIDG  + + Y  G+ V  A RGDG  GEDV+A +R I +IP             L   
Sbjct: 116 PKIDGLAVALTYRDGRLVQGATRGDGEVGEDVTANLRTIGSIPLTLQATSTPQDDDLPTT 175

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P  IEVRGEVY+   DF  LND + A G K +ANPRNAA+G LR+ +PT    R L FF
Sbjct: 176 LPTTIEVRGEVYMRTADFETLNDRLAAAGEKIFANPRNAAAGSLRQKDPTITAARPLRFF 235

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +G+G    I    Q++ L+ +R LGFPVN  VR+   F  +++Y     + R  LPY+ 
Sbjct: 236 AYGVGVVEGISLSSQWQTLRYLRALGFPVNQDVRRFTDFAEVLAYCEAWMAKRDDLPYEA 295

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V K+D+F+ Q++LG   R PRW I+ KF  ++A TRLLDI + +GRTG++TP A LE
Sbjct: 296 DGVVIKIDDFAQQRELGVVGRDPRWAIAFKFPAREAITRLLDITVNVGRTGVVTPNAELE 355

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV IGG  + NA+LHN DYI             RDIR+GD V+VKRAG+VIP VV  ++ 
Sbjct: 356 PVQIGGVTVRNASLHNADYI-----------AQRDIRIGDYVIVKRAGDVIPYVVGPVIA 404

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R    +P+ FP+ CP C S + R+         AA RC     C AQ + R++HFVSR 
Sbjct: 405 RRDGSERPWQFPTHCPACGSPLEREEGE------AAWRCNNFSICPAQLVRRVEHFVSRS 458

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +I G+G++Q + F +       IR  ADIF L+  Q         + GFG   + NL 
Sbjct: 459 ALDIVGMGERQAELFVQR----GLIRDVADIFFLKADQL------AELEGFGPKRIANLL 508

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I+  R   L+R +  LGIR+VG   A++L     S                     L 
Sbjct: 509 AAIDAARQRPLDRLLVGLGIRYVGTVAAQTLVAALGSLDAIMAARQ----------EELE 558

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTL 658
           ++P +G ++A +IV+F+  P N   +E L        G       S  +  K  V TGTL
Sbjct: 559 QIPGIGPVVAASIVDFFSRPANRALIEKLRAAGVQMGGVSGPTRQSDTLAGKTFVLTGTL 618

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R +A   +   G  V+  +S+KT  ++ G N GSKL KA QLG+ +++E   L L+
Sbjct: 619 PSLSREQASALIVAHGGKVTDSVSKKTSYVVAGANAGSKLAKALQLGIPVIDEAGLLALI 678


>gi|293395040|ref|ZP_06639327.1| DNA ligase [Serratia odorifera DSM 4582]
 gi|291422447|gb|EFE95689.1| DNA ligase [Serratia odorifera DSM 4582]
          Length = 673

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 245/710 (34%), Positives = 393/710 (55%), Gaps = 50/710 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K+++ L   + +H+  Y+    P I D+EYD L R    +  A P+L  +   + P  ++
Sbjct: 6   KKINQLRTSLRHHEYLYHVLDAPEIPDAEYDRLMRELRTLEEAHPELITA---DSPTQRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G     +  +V H +P LSL+ +++ +    F  R+      K    + F  E K+DG  
Sbjct: 63  GAAPLTAFDQVRHEVPMLSLDNVFDEDSYLAFYKRVQDRL--KSSEPLTFCCELKLDGLA 120

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKND 197
           +++ YE G+ V AA RGDG +GE+++A +R I  IP  L  +  P  +EVRGEV++ +  
Sbjct: 121 VSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLIGDNIPRRVEVRGEVFMPQAG 180

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFAKGQY 255
           F  +NDE      K +ANPRNAA+G LR+L+P     R L FF +G+G        +  Y
Sbjct: 181 FEKMNDEARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHY 240

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + L + +  G PV++ VR       ++++Y +++  RS L +DIDG+V K+D+  LQ++L
Sbjct: 241 QRLMQFKAWGLPVSDRVRLCTGSDQVLAFYRQVEQDRSQLGFDIDGVVVKIDDIDLQERL 300

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  AR+PRW  + KF  ++  T + +++ Q+GRTG +TPVARLEPV + G  ++NATLHN
Sbjct: 301 GFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHN 360

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L            +R+GD V+V+RAG+VIP+VV ++ + R PDA+   FP  CP
Sbjct: 361 ADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVEDRRPPDAREVVFPQHCP 409

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + ++   
Sbjct: 410 VCGSDVERVEGE------AVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIEQLV 463

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           + E     ++ PA +F L          +  +   G  S  NL  ++ K +  +  RF++
Sbjct: 464 EKE----YVKNPAGLFRLTA------GMLTGLDRMGPKSAQNLASALEKAKQTTFARFLY 513

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   A +LA ++ S                 D  +L +VP VG+++A+ +V F
Sbjct: 514 ALGIREVGESTAANLAAHFGSLDKLRAA----------DVEALKQVPDVGEVVAKHVVNF 563

Query: 616 YQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +    N   ++ L+           +    + + S    K +V TG+L ++ R +A++ +
Sbjct: 564 FAEALNQQVIDELVSDDIGIHWPAPVVVAVEEIDSPFAGKTVVLTGSLSQLSRDEAKDRL 623

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL Q
Sbjct: 624 TALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIAVIDEAEMIRLLGQ 673


>gi|146312580|ref|YP_001177654.1| NAD-dependent DNA ligase LigA [Enterobacter sp. 638]
 gi|190359255|sp|A4WD23|DNLJ_ENT38 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145319456|gb|ABP61603.1| DNA ligase, NAD-dependent [Enterobacter sp. 638]
          Length = 671

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 244/713 (34%), Positives = 395/713 (55%), Gaps = 48/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   ++L+ L   + +H+  Y+    P + D+EYD L R    +    P+L     P+ 
Sbjct: 1   MDSIEQQLTQLRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     S  +V H +P LSL+ +++ E    F  R+    +  D  ++ +  E K
Sbjct: 58  PTQRVGAAPLASFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSAD--TLTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED++A +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGLLVRAATRGDGTTGEDITANVRTIRAIPLTLRGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF- 250
           + +  F  +NDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQKGFEKINDEARRTGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGVL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV+N V+  ++   ++++Y++++  R +L +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKEWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPSLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++ +ER  D +   F
Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPDDTREIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R             RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PAHCPVCGSDVERVEGE------VVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L      S  K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFRL------SAGKLTGLDRMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA ++ + +   +               L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEQLEKAT----------IDDLQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL+E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGKLLEEGIHWPAPVVINVEEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +  +GA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + L L  +
Sbjct: 619 ARLVAIGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLFGE 671


>gi|168238909|ref|ZP_02663967.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194734182|ref|YP_002115493.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|254781415|sp|B4TQF8|DNLJ_SALSV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194709684|gb|ACF88905.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288317|gb|EDY27698.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 671

 Score =  582 bits (1499), Expect = e-164,   Method: Composition-based stats.
 Identities = 243/712 (34%), Positives = 393/712 (55%), Gaps = 48/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL 
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGITVIDEAEMIRLLD 670


>gi|157371681|ref|YP_001479670.1| NAD-dependent DNA ligase LigA [Serratia proteamaculans 568]
 gi|190359284|sp|A8GHF2|DNLJ_SERP5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157323445|gb|ABV42542.1| DNA ligase, NAD-dependent [Serratia proteamaculans 568]
          Length = 673

 Score =  582 bits (1499), Expect = e-164,   Method: Composition-based stats.
 Identities = 239/713 (33%), Positives = 398/713 (55%), Gaps = 50/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P + D+EYD L     A+  A P+L  +   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMGELRALESAHPELITA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R+      K  + + F  E K
Sbjct: 58  PTQRVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRL--KSSDPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE++++ +R I  IP  L+ +  P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGDNIPRRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N+E      K +ANPRNAA+G +R+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQMNEEARRKDGKIFANPRNAAAGSIRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +  ++ L + +  G PV++  ++      ++++Y +++  R+ L +DIDG+V K+D+  
Sbjct: 236 PRSHWQRLMQFKDWGLPVSDRAKRCTGSDEVLAFYRQVEQDRTQLGFDIDGVVVKIDDID 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQETLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVLVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +I   R  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVIAERRPADAREILF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S V R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PQHCPVCGSDVERVEGE------AVARCTGGLICAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + E     ++ PAD+F L      S   +  +   G  S  NL +++ K +  + 
Sbjct: 459 IEQLVEKE----YVKNPADLFRL------SAGILTGLDRMGPKSAQNLVNALEKSKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +                 D  +L  VP VG+I+A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFGTLDKLLAA----------DIEALKEVPEVGEIVAK 558

Query: 611 AIVEFYQNPRNICAVEALLK-EVSPSIGRH----EKNVSSEIENKKLVFTGTLQKIQRHK 665
               F     N   ++ L+  E+  +         + + S    K +V TG+L ++ R +
Sbjct: 559 HTRHFLDEELNQQVIQELVSDEIGINWPAPVVIVAEEIDSPFAGKTVVLTGSLSQLSRDE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL
Sbjct: 619 AKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIEVIDEAEMIRLL 671


>gi|329297490|ref|ZP_08254826.1| NAD-dependent DNA ligase LigA [Plautia stali symbiont]
          Length = 672

 Score =  582 bits (1499), Expect = e-164,   Method: Composition-based stats.
 Identities = 249/712 (34%), Positives = 399/712 (56%), Gaps = 49/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   ++++++L   + +H+  Y+    P I D+EYD L R    +  A PDL     P+ 
Sbjct: 1   MTSVQEQITALRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELESAHPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+  ++      F  R+    +  D+  + +  E K
Sbjct: 58  PTQRVGAAPLATFEQVRHEVPMLSLDNTFDEAGFLAFNKRMQDRLKSTDN--LTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GE+++A +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGLLVRAATRGDGTTGENITANVRTIHAIPLRLHGDNIPARVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           ++++ F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G G       
Sbjct: 176 MTESGFEKLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               ++ LQ+ +  G PV++ +R  +T   ++++Y +++  R +L +DIDG+V KVD  +
Sbjct: 236 PASHWQRLQQFKAWGLPVSDRIRLVHTADEVLAFYRQVEQDRPSLGFDIDGVVIKVDSQA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++ +ER  DA+   F
Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPADAREIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S V            A  RCTGGL C AQ+ E LKHFVS  A +++G+G + 
Sbjct: 405 PSHCPVCGSDVESVEGE------AVTRCTGGLICGAQRKEALKHFVSHRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     ++ PAD+F L         K+  +   G  S  N+ D++ K +  +L
Sbjct: 459 IDQLVEKE----YVKTPADLFRLTA------GKLTGLDRMGPKSAQNVVDALEKAKLTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++   +               D  +LI V  VG ++A 
Sbjct: 509 PRFLYALGIREVGEATAANLANHFGELEKVMNA----------DLDALIAVQDVGKVVAA 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F +   N   +  L  EV       +    + + S    K +V TG+L ++ R  A
Sbjct: 559 HVRNFMEEESNREVIRQLTDEVGVHWPAVVVVKAEEIDSPFAGKTVVLTGSLSQMNRDDA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL
Sbjct: 619 KARLTALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670


>gi|206579402|ref|YP_002237241.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae 342]
 gi|288934177|ref|YP_003438236.1| DNA ligase, NAD-dependent [Klebsiella variicola At-22]
 gi|254781350|sp|B5XVT4|DNLJ_KLEP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206568460|gb|ACI10236.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae 342]
 gi|288888906|gb|ADC57224.1| DNA ligase, NAD-dependent [Klebsiella variicola At-22]
          Length = 671

 Score =  582 bits (1499), Expect = e-164,   Method: Composition-based stats.
 Identities = 249/713 (34%), Positives = 399/713 (55%), Gaps = 48/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R    +    P+L     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  DD  + +  E K
Sbjct: 58  PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDD--LTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  + AA RGDG +GED+++ +R I TIP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLMQAATRGDGTTGEDITSNVRTIRTIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  LQ+ +  G PV++ V   +T   +++YY +++  R  L +DIDG+V KVD  +
Sbjct: 236 PASHSARLQQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEDRPHLGFDIDGVVIKVDSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GD+V+++RAG+VIP+VV+++++ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L      S  K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFRL------SAGKLTGLDRMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ + +   Q               L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAALAAHFGTLEALEQA----------SIEELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
               F+    N   +  LL E       +    + + S    K +V TG+L ++ R  A+
Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVHWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671


>gi|238785571|ref|ZP_04629551.1| DNA ligase [Yersinia bercovieri ATCC 43970]
 gi|238713506|gb|EEQ05538.1| DNA ligase [Yersinia bercovieri ATCC 43970]
          Length = 670

 Score =  582 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 247/712 (34%), Positives = 403/712 (56%), Gaps = 47/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++   +    P+L  S   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLESQHPELITS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R++   ++ +   + F  E K
Sbjct: 58  PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRTE--PLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE+++A +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + +  F  LNDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRRLAFFCYGVGLLDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L + +  G PV+N V+       ++++Y +++  R+ L +DIDG+V KVD+  
Sbjct: 236 PRSHIQRLMQFKAWGLPVSNRVQLCTGSEQVIAFYRQVEQDRAGLGFDIDGVVIKVDDLD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  DA+  +F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAKEITF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PEHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+F L         K+  +   G  S  NL  ++ + +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFELTA------GKLTGLDRMGPKSAQNLIVALERAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D   L  VP VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNMANLRAA----------DIDELKSVPDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +EAL K +S    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVLNFLGEEHNQRVIEALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +T LGA VS  +SRKTD++I G+  GSKL KAQ+LG+ +++E + + LL +
Sbjct: 619 RLTALGAKVSGSVSRKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLLGE 670


>gi|16765747|ref|NP_461362.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167991721|ref|ZP_02572820.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|197262860|ref|ZP_03162934.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|81522316|sp|Q8ZN89|DNLJ_SALTY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|16420966|gb|AAL21321.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|197241115|gb|EDY23735.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205329843|gb|EDZ16607.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261247627|emb|CBG25454.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|267994529|gb|ACY89414.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158979|emb|CBW18492.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|312913414|dbj|BAJ37388.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321222873|gb|EFX47944.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|323130756|gb|ADX18186.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332989355|gb|AEF08338.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 671

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQELLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKSKTTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|238759468|ref|ZP_04620632.1| DNA ligase [Yersinia aldovae ATCC 35236]
 gi|238702365|gb|EEP94918.1| DNA ligase [Yersinia aldovae ATCC 35236]
          Length = 670

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 245/710 (34%), Positives = 398/710 (56%), Gaps = 47/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++++ L   + +H+  Y+    P I D+EYD L ++   +    P+L  +   + 
Sbjct: 1   MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELVTN---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  R++     K    + F  E K
Sbjct: 58  PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRL--KSVEPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE+G+ V AA RGDG +GE+++A +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEEGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           +    F  LNDE    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPLAGFEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     L + +  G PV++ V+       ++++Y +++  R+ L +DIDG+V KVD+  
Sbjct: 236 PRSHIARLMQFKAWGLPVSDRVKLCTGSEQVIAFYRQVEQDRAGLGFDIDGVVIKVDDLD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW  + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP+VV +++ +R  D Q   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDTQEIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PEHCPVCGSDIERIEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + +     +  PAD+FTL         K+  +   G  S  NL  ++ K +  + 
Sbjct: 459 IEQLVEKQ----YVENPADLFTLTA------GKLTGLDRMGPKSAQNLIVALEKAKQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ +  N              D  +L  V  VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNLANLRAA----------DIDALKSVQDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F     N   +EAL + +S    +    + + S    K +V TG+L  + R +A++
Sbjct: 559 HVMNFLNEEHNQKVIEALEQVISWPEPQQIVVEEIDSPFAGKTVVLTGSLTMLSRDEAKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLL 668


>gi|332290231|ref|YP_004421083.1| NAD-dependent DNA ligase LigA [Gallibacterium anatis UMN179]
 gi|330433127|gb|AEC18186.1| NAD-dependent DNA ligase LigA [Gallibacterium anatis UMN179]
          Length = 671

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 254/711 (35%), Positives = 392/711 (55%), Gaps = 45/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++ +  L  ++ YH+  Y+    P+I D+EYD +  +   +    P+L      + 
Sbjct: 1   MDDLQQHIEQLRNDLRYHEYQYHVLDNPVIPDAEYDRMMNQLKRLEAEHPELITD---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H +P LSL+  ++ E+   FI RI        D    F  EPK
Sbjct: 58  PTQRVGAKPANGFQQIRHELPMLSLDNAFSDEEFFAFIRRIEDRLGVLPD-PFTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVY 192
           +DG  ++I Y  GK   AA RGDG +GED++A IR I  IP    +   P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGKLTQAATRGDGVTGEDITANIRTIRNIPLQLRTATPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF-FVHGLGKTS-EIF 250
           +  + F  LN+  +  G K +ANPRNAA+G LR+L+P            +G+G       
Sbjct: 177 MPHDGFERLNNHALEHGEKTFANPRNAAAGSLRQLDPQVTYHRPLMLNAYGIGIAEGVEL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y+ LQ ++ +G PVN  +R  N    ++ +Y  +   RS+L YDIDG V KV+   
Sbjct: 237 PNTHYDRLQWLKSIGIPVNKEIRLCNGTTEVLDFYRSIAEKRSSLGYDIDGTVLKVNSIP 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  +R+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQEQLGFISRAPRWAIAYKFPAQEELTILNDVEFQVGRTGAITPVAKLEPVYVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L           DI +GD V+++RAG+VIP+++ ++ + R PDA+P  F
Sbjct: 357 ATLHNGDEIARL-----------DIAIGDTVIIRRAGDVIPQIIGVVHDRRPPDAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S +VR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTRCPVCDSAIVRIDGE------AVARCTGGLVCEAQRKEGLKHFVSRKAMDIDGVGDKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  P D+FTL +           +   G+ S      SI K +  +L
Sbjct: 460 IEQLVDRE----YLHTPVDLFTLSKETLMG------LERMGEKSAEKALASIEKAKKTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+F+LGIR VG   AR+LA ++ + +N               +  L +V  +G+++A 
Sbjct: 510 ARFLFALGIREVGEATARNLANHFHTLENIKNAT----------FEQLQQVQDIGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEY 669
            I+ F+Q   N   VE L+++       +   +  + ++ K +V TGTL ++ R +A+  
Sbjct: 560 RIILFWQEQHNRNVVEKLIEQGVTWDDVNATEIADNPLKEKTVVLTGTLTQMTRDQAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + QLG  V+  +S KTD +I GDN GSKL+KA+ LGVK++ E+QFL L+ Q
Sbjct: 620 LLQLGCKVAGSVSSKTDFVIAGDNAGSKLQKAESLGVKVLTEQQFLDLIPQ 670


>gi|290508381|ref|ZP_06547752.1| DNA ligase, NAD-dependent [Klebsiella sp. 1_1_55]
 gi|289777775|gb|EFD85772.1| DNA ligase, NAD-dependent [Klebsiella sp. 1_1_55]
          Length = 671

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 249/713 (34%), Positives = 399/713 (55%), Gaps = 48/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P + D+EYD L R    +    P+L     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  DD  + +  E K
Sbjct: 58  PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDD--LTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  + AA RGDG +GED+++ +R I TIP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLMQAATRGDGTTGEDITSNVRTIRTIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  LQ+ +  G PV++ V   +T   +++YY +++  R  L +DIDG+V KVD  +
Sbjct: 236 PASHSARLQQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEDRPHLGFDIDGVVIKVDSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQITFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GD+V+++RAG+VIP+VV+++++ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L      S  K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFRL------SAGKLTGLDRMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ + +   Q               L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAALAAHFGTLEALEQA----------SIEELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
               F+    N   +  LL E       +    + + S    K +V TG+L ++ R  A+
Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVHWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL +
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671


>gi|161612830|ref|YP_001586795.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|190359282|sp|A9N362|DNLJ_SALPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|161362194|gb|ABX65962.1| hypothetical protein SPAB_00529 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 671

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL CSAQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICSAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|168466836|ref|ZP_02700690.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195630762|gb|EDX49354.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 671

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------VKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|167581473|ref|ZP_02374347.1| DNA ligase, NAD-dependent [Burkholderia thailandensis TXDOH]
          Length = 691

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 263/726 (36%), Positives = 395/726 (54%), Gaps = 53/726 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  S  Q  K  + L  E+   +  YY   +P + D+EYD L      I    PDL  
Sbjct: 5   PVEP-SAGQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GGE+      V H  P LSL   ++ +D+  F  R+     K  D    
Sbjct: 63  --TPDSPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKPTDLVGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
               + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR + +IP  L    
Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGKR 180

Query: 182 PEII-EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
              + +VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 VPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G             +L     LG PVN          G++ +++ + + R +LPYD
Sbjct: 241 AYGIGVLDGVEMPDTHSSLLDWYETLGLPVNRERAVVRGAAGLLEFFHSVGARRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++
Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DA+ F  P+ CP C SRV R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAREFVMPTECPECGSRVERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L        + +  +  F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S                     L
Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SIDEL 563

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFT 655
           + V  VG I+A++I +F+    N   +E L  +   +        +     +  K +V T
Sbjct: 564 LEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAKGKVTWPEGPPAPRAPQGVLAGKTVVLT 623

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E    
Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683

Query: 716 FLLQQY 721
            LL+ +
Sbjct: 684 KLLEGH 689


>gi|261345310|ref|ZP_05972954.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541]
 gi|282566645|gb|EFB72180.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541]
          Length = 678

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 237/712 (33%), Positives = 393/712 (55%), Gaps = 49/712 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +  ++++ SL+Q++ +H+  Y+    P I D EYD L +    +    P+L  +   + P
Sbjct: 8   DALKQKIDSLKQQLRHHEYLYHVLDAPEIPDVEYDKLMQELKGLEAENPELITT---DSP 64

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G     +   V H +P LSL+ +++ E    F  R+       +   + F  E K+
Sbjct: 65  TQRVGAAPLTAFGTVRHEVPMLSLDNVFDEESYLAFDKRVKDRLN--NHTELTFCCELKL 122

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193
           DG  +++ YE G+ V AA RGDG  GE+++  +R I  IP  L  +  P  +E+RGEV++
Sbjct: 123 DGLAVSLLYENGELVQAATRGDGSVGENITVNVRTIKAIPLRLRGDNIPARVEIRGEVFM 182

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-A 251
            +  F A+N+E      K +ANPRNAA+G LR+L+P     R L F+ +G+G        
Sbjct: 183 PQKGFEAMNEEARRTDGKIFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGNTLP 242

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              YE L + +  G PV+  V+       ++ +Y+ ++ IR TL +DIDG+V KV++ + 
Sbjct: 243 DTHYERLMQFKAWGLPVSEHVQLRVGCQQVLDFYHHVEKIRPTLGFDIDGVVIKVNDIAT 302

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW  + KF  ++  T L D++ Q+GRTG +TPVARLEPV + G +++NA
Sbjct: 303 QEKLGFVSRAPRWATAFKFPAQEQLTLLKDVEFQVGRTGAITPVARLEPVQVAGVVVSNA 362

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            +R+GD V+++RAG+VIP++V +++++R  D++  +FP
Sbjct: 363 TLHNADEIERL-----------GVRIGDTVVIRRAGDVIPQIVSVVMDKRPADSREITFP 411

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S + R          A  RCTGGL C AQ  E LKHFVSR A +++G+G + +
Sbjct: 412 TQCPVCHSDIERVEGE------AVARCTGGLTCGAQLKESLKHFVSRRAMDVDGMGDKII 465

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +    +E     ++  A ++ L      S  K+  +   G  S   L D++ K +  +L 
Sbjct: 466 EQLVDAE----YVKNAAQLYQL------SAGKLTGLERMGPKSAQKLIDALEKSKQTTLA 515

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFI++LGIR VG   A +LA +Y S                 D  SL  V  +G+++A+ 
Sbjct: 516 RFIYALGIREVGEATAANLASHYASLDAVMAA----------DEESLKAVQDIGEVVAKH 565

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +V F+    N   +  LL   +      +      + S    K +V TG++ ++ R +A+
Sbjct: 566 VVNFFHEEHNRQVIHDLLTIANIHWPEVKVVNSDEIDSPFAGKTVVLTGSMSRLTRDEAK 625

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +  LGA V+  +S+KTD++I G+  GSKL KA +LGVK+++E++ + LL 
Sbjct: 626 DQLVALGAKVAGSVSKKTDMVIAGEAAGSKLAKAIELGVKVIDEDELVRLLN 677


>gi|83720010|ref|YP_442546.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
 gi|257138755|ref|ZP_05587017.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
 gi|123753789|sp|Q2SX03|DNLJ_BURTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83653835|gb|ABC37898.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
          Length = 691

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 262/726 (36%), Positives = 394/726 (54%), Gaps = 53/726 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  S  Q  K  + L  E+   +  YY   +P + D+EYD L      I    PDL  
Sbjct: 5   PVEP-SAGQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GGE+      V H  P LSL   ++ +D+  F  R+     K  D    
Sbjct: 63  --TPDSPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKPTDLAGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
               + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR + +IP  L    
Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGKR 180

Query: 182 PEII-EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
              + +VRGEV + + DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 VPRMLDVRGEVLMFRRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G             +L     LG PVN          G++ +++ + + R +LPYD
Sbjct: 241 AYGIGVLDGVEMPDTHSSLLDWYETLGLPVNRERAVVRGAAGLLEFFHSVGARRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  + 
Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVF 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DA+ F  P+ CP C SRV R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAREFVMPTECPECGSRVERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L        + +  +  F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S                     L
Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SIDEL 563

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFT 655
           + V  VG I+A++I +F+    N   +E L  +   +        +     +  K +V T
Sbjct: 564 LEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAKGKVTWPEGPPAPRAPQGVLAGKTVVLT 623

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E    
Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683

Query: 716 FLLQQY 721
            LL+ +
Sbjct: 684 KLLEGH 689


>gi|62180995|ref|YP_217412.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|75481868|sp|Q57LT1|DNLJ_SALCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|62128628|gb|AAX66331.1| DNA ligase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322715476|gb|EFZ07047.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 671

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAEGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|161502427|ref|YP_001569539.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|190359281|sp|A9MIG0|DNLJ_SALAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160863774|gb|ABX20397.1| hypothetical protein SARI_00461 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 671

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R   A+    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRALEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVRAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRSGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++++Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLAFYHNVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIDRL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +    
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATIF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAA----------SIDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNREVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + L LL
Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLL 669


>gi|200388789|ref|ZP_03215401.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199605887|gb|EDZ04432.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 671

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 243/712 (34%), Positives = 392/712 (55%), Gaps = 48/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------VKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL 
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLLD 670


>gi|300717845|ref|YP_003742648.1| DNA ligase [Erwinia billingiae Eb661]
 gi|299063681|emb|CAX60801.1| DNA ligase [Erwinia billingiae Eb661]
          Length = 672

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 253/714 (35%), Positives = 396/714 (55%), Gaps = 49/714 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  + ++++L+  + +H+  Y+    P + D+EYD L R    +  A P+L  +   + 
Sbjct: 1   MESVQDKITALQTTLRHHEYQYHVMDDPEVPDAEYDRLMRELRELEQAHPELVTA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+  ++ E    F  R+      K+ + I F  E K
Sbjct: 58  PTQRVGAAPLGAFEQVRHEVPMLSLDNAFDEESYLAFYKRVQDRL--KNTDDITFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GE+++A +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGLLVRAATRGDGTTGENITANVRTIRAIPLRLHGENIPSRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           +    F ALN+E    G K +ANPRNAA+G LR+L+P     R L FF +G G       
Sbjct: 176 MPLAGFEALNNEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     LQ+ +  G PV++ ++  +T   ++++Y +++  R TL +DIDG+V KVD   
Sbjct: 236 PRSHMARLQQFKAWGLPVSDRIKLCHTAEEVLAFYRQVEQDRPTLGFDIDGVVIKVDSQD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GDRV+++RAG+VIP+VV +I +ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDRVIIRRAGDVIPQVVGVIESERPDDAREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R             RCTGGL C AQ+   LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------VVARCTGGLICGAQRKGALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +S+ K +  +L
Sbjct: 459 IDQLVEKE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNSLEKAKTTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF++SLGI  VG   A +LA ++ S +               D  +LI V  VG ++A 
Sbjct: 509 ARFLYSLGISEVGEATAANLAAHFGSLEKIMAA----------DLDALIAVQDVGTVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F     N   +  L++E   +    E      + S    K +V TG+L  + R +A
Sbjct: 559 HLRNFMDEESNREVIRQLVEEAGINWPAVEVVNAAEIDSPFAGKTVVLTGSLTILSRDEA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL +
Sbjct: 619 KDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMIRLLGE 672


>gi|197247622|ref|YP_002147380.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|254781407|sp|B5F0F5|DNLJ_SALA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|197211325|gb|ACH48722.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 671

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 243/712 (34%), Positives = 392/712 (55%), Gaps = 48/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL 
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLLD 670


>gi|186476101|ref|YP_001857571.1| DNA ligase, NAD-dependent [Burkholderia phymatum STM815]
 gi|254781277|sp|B2JID1|DNLJ_BURP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|184192560|gb|ACC70525.1| DNA ligase, NAD-dependent [Burkholderia phymatum STM815]
          Length = 683

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 256/712 (35%), Positives = 387/712 (54%), Gaps = 49/712 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            +    L  E+   +  YY   +P + D+EYD L +    I    PDL     P+ P  +
Sbjct: 15  AERALWLRDELERANYAYYVLDQPDLPDAEYDRLFKELQQIESEHPDLI---TPDSPTQR 71

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+      V H +P LSL   ++ ED+  F  R+           + +  E K DG 
Sbjct: 72  VGGEVASGFRPVVHDMPMLSLNNGFSDEDIAAFDKRVSDTLH---HTPVDYACELKFDGL 128

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKN 196
            I++RY  G+F  AA RGDG +GEDV+  +R I +IP  L     P++++VRGEV + + 
Sbjct: 129 AISLRYVDGQFTQAATRGDGATGEDVTENVRTIRSIPLKLKGKRVPKLVDVRGEVLMFRR 188

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFAKGQ 254
           DF  LN      G++ +ANPRNAA+G LR+L+P     R L+FF +G+G           
Sbjct: 189 DFDKLNQRQRDAGQREFANPRNAAAGSLRQLDPKMTAQRPLSFFAYGIGVLDGIEMPGTH 248

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E+L     +G PVN+         G++ +++++   R  LPYDIDG+VYKV+    Q  
Sbjct: 249 SELLDWYHEMGLPVNSERAVVQGAEGVLGFFHKVGEKRDKLPYDIDGVVYKVNRRDEQDA 308

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLH
Sbjct: 309 LGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARLEPVFVGGATVTNATLH 368

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED ++            +DIR+GD V+V+RAG+VIP+VV  ++  R PDA+ F  P+ C
Sbjct: 369 NEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLERRPPDAREFVMPTQC 417

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S + R  +       A  RC+GGL C AQ+ + L HF  R A +I+GLG++ +D  
Sbjct: 418 PVCGSAIERLPDE------AIARCSGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQL 471

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +L RFI
Sbjct: 472 VE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLIDSLEKAKHTTLARFI 521

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIRHVG   A+ LA+++ S                     L+ V  VG I+A+AI +
Sbjct: 522 YALGIRHVGESTAKDLARHFGSLDPIMSAT----------VEELLEVNDVGPIVAEAIHQ 571

Query: 615 FYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           F+    N   +E L      +        K     +  K +V TGTL  + R +A+E + 
Sbjct: 572 FFAEEHNRTVIEQLRAPGKVTWAEGPPAPKAPQGVLAGKTVVLTGTLPNMGRDEAKELLE 631

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+   T
Sbjct: 632 AAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKLLEGQTT 683


>gi|317491275|ref|ZP_07949711.1| DNA ligase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920822|gb|EFV42145.1| DNA ligase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 678

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 243/702 (34%), Positives = 384/702 (54%), Gaps = 50/702 (7%)

Query: 25  EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84
              + +H+  Y+    P I D+EYD L R   A+    P+L     P+ P  ++G     
Sbjct: 17  RTALRHHEYQYHVLDAPEIPDAEYDRLMRELRALEEQHPELI---TPDSPTQRVGAAPLS 73

Query: 85  SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144
           +  +V H +P LSL+ +++ E    F  R++     K    + F  E K+DG  +++ YE
Sbjct: 74  AFSQVRHEVPMLSLDNVFDDESYLAFDKRVHDRL--KTAEPLTFCCELKLDGLAVSLLYE 131

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALND 203
            G  V  A RGDG +GED++A ++ I  IP  L  +  P  +EVRGEV++    F A+N+
Sbjct: 132 DGVLVRGATRGDGTTGEDITANVKTIRAIPLRLQGDNIPRRVEVRGEVFMPLAGFEAMNE 191

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEIFAKGQYEMLQKM 261
           E      K +ANPRNAA+G LR+L+P     R L FF +G+G           Y  LQ+ 
Sbjct: 192 EARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLMDGGELPASHYARLQQF 251

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           +  G PV++ V++      ++ +Y +++  R TL +DIDG+V KVD   +Q+QLG  AR+
Sbjct: 252 KAWGLPVSDRVKRCTGSDEVLKFYRQVEQERPTLGFDIDGVVIKVDSIEIQEQLGFVARA 311

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW  + KF  ++  T +  ++ Q+GRTG +TPVARLEPV + G +++NATLHN D I  
Sbjct: 312 PRWATAFKFPAQEQMTVVNGVEFQVGRTGAITPVARLEPVLVAGVIVSNATLHNADEIDR 371

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
           L            +R+GD V+V+RAG+VIP+VV ++  +R  +AQ   FP  CP+C S V
Sbjct: 372 L-----------GLRIGDTVIVRRAGDVIPQVVGVVEAQRPENAQEIVFPQHCPVCGSDV 420

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + ++   + E   
Sbjct: 421 ERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIEQLVEKE--- 471

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             ++ PAD++ L          +  +   G  S TNL +++ K +  +L RF+++LGIR 
Sbjct: 472 -YVKTPADLYRLTA------GILTGLDRMGPKSATNLVNALAKSKETTLARFLYALGIRE 524

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG   A +LA ++ S +   +           D  +L  V  VG+++A+ +  F     N
Sbjct: 525 VGEATAANLAAHFGSLEALREA----------DVEALKSVQDVGEVVAKHVRHFLGEEHN 574

Query: 622 ICAVEALLK-EVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              ++ L+  E+       +    + + S    K +V TG+L  + R +A++ +  LGA 
Sbjct: 575 QKVIDELISDEIGIHWPAPQVIVAEEIDSPFAGKTVVLTGSLSLMPRDEAKDRLAALGAK 634

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 635 VSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRLL 676


>gi|204929538|ref|ZP_03220612.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204321257|gb|EDZ06457.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 671

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGITVIDEAEMIRLL 669


>gi|168817829|ref|ZP_02829829.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205345161|gb|EDZ31925.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320086917|emb|CBY96687.1| DNA ligase [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 671

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 244/712 (34%), Positives = 394/712 (55%), Gaps = 48/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLNQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL 
Sbjct: 619 ERLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLLD 670


>gi|167619582|ref|ZP_02388213.1| DNA ligase, NAD-dependent [Burkholderia thailandensis Bt4]
          Length = 691

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 262/726 (36%), Positives = 395/726 (54%), Gaps = 53/726 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E  S  Q  K  + L  E+   +  YY   +P + D+EYD L      I    PDL  
Sbjct: 5   PVEP-SAGQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLV- 62

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123
              P+ P  ++GGE+      V H  P LSL   ++ +D+  F  R+     K  D    
Sbjct: 63  --TPDSPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKPTDLAGT 120

Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
               + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR + +IP  L    
Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGKR 180

Query: 182 PEII-EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
              + +VRGEV + + DF  LN+   A G++ +ANPRNAA+G LR+L+     +R L+FF
Sbjct: 181 VPRMLDVRGEVLMFRRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240

Query: 240 VHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G             +L     LG PVN          G++ +++ + + R +LPYD
Sbjct: 241 AYGIGVLDGVEMPDTHSSLLDWYETLGLPVNRERAVVRGAAGLLEFFHSVGARRESLPYD 300

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARL
Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++
Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R  DA+ F  P+ CP C SRV R  +       A  RCTGGL C AQ+ + L HF  R
Sbjct: 410 DRRPADAREFVMPTECPECGSRVERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG++ +D   +       +R PAD+F L        + +  +  F + S  NL
Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S                     L
Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SIDEL 563

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFT 655
           + V  VG I+A++I +F+    N   +E L  +   +        +     +  K +V T
Sbjct: 564 LEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAKGKVTWPEGPPAPRAPQGVLAGKTVVLT 623

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E    
Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683

Query: 716 FLLQQY 721
            LL+ +
Sbjct: 684 KLLEGH 689


>gi|157144662|ref|YP_001451981.1| NAD-dependent DNA ligase LigA [Citrobacter koseri ATCC BAA-895]
 gi|166215574|sp|A8ADI2|DNLJ_CITK8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157081867|gb|ABV11545.1| hypothetical protein CKO_00382 [Citrobacter koseri ATCC BAA-895]
          Length = 671

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQHPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K  + + +  E K
Sbjct: 58  PSQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSGDKLTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  + AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLISAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPEAVLDFYHKVEEDRPTLGFDIDGVVIKVNSMA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVEF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  +   + S    K +V TG+L  + R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGIHWPAPIVVNADEIDSPFAGKTIVLTGSLSLMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + L LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLL 669


>gi|153838362|ref|ZP_01991029.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus AQ3810]
 gi|149748221|gb|EDM59080.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus AQ3810]
          Length = 670

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 251/713 (35%), Positives = 393/713 (55%), Gaps = 48/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E   + L  L++ + YH   YY    P I D+EYD L R    I    PDL      
Sbjct: 1   MS-ESVHQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTV--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+      +VTH +P LSL+  ++  +L  F  R       +      +  E
Sbjct: 57  DSPSQRVGGKPLSEFSQVTHEVPMLSLDNAFDDSELDSFHKRAQDRIGGESIKQ--YCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L  +  P  +EVRGE
Sbjct: 115 PKLDGLAVSLLYENGILVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249
           V++ K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G     
Sbjct: 175 VFMPKAGFEKLNELARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGA 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A   YE   +++  G P+    ++ ++   + +YY ++   R  LPY+IDG+V K+D+
Sbjct: 235 DLAASHYERFLQIKSWGLPMCPETKRVDSLADVKTYYQDILQRRDALPYEIDGVVIKIDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            ++Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  +
Sbjct: 295 IAVQERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            +++GD+V+++RAG+VIP+VV +I   R   A+  
Sbjct: 355 SNATLHNADEIERLQ-----------VKIGDQVVIRRAGDVIPQVVSVIKERRPETARDI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+C S V R          A  RCTGGL C AQ+ + LKHFVSR A +++GLG 
Sbjct: 404 IFPTQCPVCGSHVERIEGE------AVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGD 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L      S   +  +   G  S  N+ +++ K +  
Sbjct: 458 KVIEQLVDRE----MVETPADLFKL------SAGVLTVLERMGPKSAQNIVNALEKSKLT 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA+++ S +                   LI V  +G ++
Sbjct: 508 TLPRFLYSLGIREVGEATAANLAQHFKSLEAIQAATE----------EQLIAVQDIGVVV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A+ I  F++  +N   V+ LL +    P +   E+     +E K +V TGTL ++ R +A
Sbjct: 558 AKHITTFFEEEKNQAVVQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLTGTLSQLGRTEA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L+ 
Sbjct: 618 KEALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELIN 670


>gi|215918993|ref|NP_819574.2| NAD-dependent DNA ligase [Coxiella burnetii RSA 493]
 gi|218512010|sp|Q83DZ6|DNLJ_COXBU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206583878|gb|AAO90088.2| NAD-dependent DNA ligase [Coxiella burnetii RSA 493]
          Length = 673

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 247/709 (34%), Positives = 388/709 (54%), Gaps = 46/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + +K +  L QEI+ H+  YY  S+P I DS YD L    + +   +P+   +  P+ 
Sbjct: 7   PAKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELEKLEKKYPE---TITPSS 63

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E       V H IP LSL+ +++ + LR F  RI +    K D    +  EPK
Sbjct: 64  PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRL--KLDKPFEYVCEPK 121

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV 
Sbjct: 122 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 181

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + +  F   N E    G K +ANPRNAASG LR+L+P     R L F+ + +G       
Sbjct: 182 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 241

Query: 252 K-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   
Sbjct: 242 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG +TPVARLEPV++ G  ++N
Sbjct: 302 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSN 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D +             +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    
Sbjct: 362 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 410

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C + V++          A  RC GGL C AQ  E +KHF SR A +IEGLG + 
Sbjct: 411 PSRCPVCHAEVIKPEGE------AVARCVGGLYCRAQLRESIKHFASRRALDIEGLGDKL 464

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F + +     I+    I+ L++      + I  +   G+ S  NL  +I K +  +L
Sbjct: 465 VELFIQEK----LIKDITGIYQLKK------SAITALPRMGEKSAENLLTAIEKSKKTTL 514

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   AR+LA+++       +              +L  +  +G + A+
Sbjct: 515 PRFLYALGIRGVGDTTARTLARHFHELDLLMKA----------SIETLQEIRDIGPVAAE 564

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I  F+    N   +  L+  +     + +  V SEI  K  V TG L+ + R +A+E +
Sbjct: 565 NIHAFFHQKNNAELINKLI-HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 623

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 624 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 672


>gi|212710592|ref|ZP_03318720.1| hypothetical protein PROVALCAL_01658 [Providencia alcalifaciens DSM
           30120]
 gi|212686673|gb|EEB46201.1| hypothetical protein PROVALCAL_01658 [Providencia alcalifaciens DSM
           30120]
          Length = 678

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 239/714 (33%), Positives = 392/714 (54%), Gaps = 49/714 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + +   +++ +L+Q++ +H+  Y+    P I D EYD L +   A+    P+L  +   +
Sbjct: 6   NPDALTQKIDALKQQLRHHEYLYHVMDAPEIPDVEYDKLMQELKALEAEHPELITT---D 62

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G     +   V H IP LSL+ +++ E    F  R+       +   + F  E 
Sbjct: 63  SPTQRVGAAPLAAFDTVRHEIPMLSLDNVFDEESYLAFDKRVKDRL--HNHTELTFCCEL 120

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191
           K+DG  +++ YE G+ V AA RGDG  GE+++A +R I  IP  L  +  P  +E+RGEV
Sbjct: 121 KLDGLAVSLLYENGELVQAATRGDGTVGENITANVRTIKAIPLRLRGDNIPARVEIRGEV 180

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ +  F A+N+E      K +ANPRNAA+G LR+L+P     R L F+ +G+G      
Sbjct: 181 FMPQKGFEAMNEEARKTDGKIFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGKT 240

Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                YE L + +  G PV+  V+       ++ +Y+ ++ IR TL +DIDG+V KV++ 
Sbjct: 241 LPDTHYERLMQFKAWGLPVSEHVQLRVGCQQVLDFYHHVEKIRPTLGFDIDGVVIKVNDI 300

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           ++Q++LG  +R+PRW  + KF  ++  T L D++ Q+GRTG +TPVARLEPV + G +++
Sbjct: 301 AIQEELGFVSRAPRWATAFKFPAQEQITLLKDVEFQVGRTGAITPVARLEPVQVAGVVVS 360

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I  L            +R+GD V+++RAG+VIP++V +++++R  D++   
Sbjct: 361 NATLHNADEIDRL-----------GVRIGDTVVIRRAGDVIPQIVSVVMDKRPADSREII 409

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S + R          A  RCTGGL C AQ  E LKHFVSR A +++G+G +
Sbjct: 410 FPTHCPVCNSDIERVEGE------AVARCTGGLTCGAQLKESLKHFVSRRAMDVDGMGDK 463

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++    +E     +   A ++ L      S  K+  +   G  S   L D++ K +  +
Sbjct: 464 IIEQLVDAE----YVANAAQLYQL------SAGKLTGLERMGPKSAQKLIDALEKSKQTT 513

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI++LGIR VG   A +LA +Y S                 D  SL  V  +G+++A
Sbjct: 514 LARFIYALGIREVGEATAANLAAHYASLDAVMAA----------DEDSLKTVQDIGEVVA 563

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHK 665
           + +V F++   N   +  LL   +      +      + S    K +V TG++  + R  
Sbjct: 564 KHVVHFFREEHNRQVIHDLLTIANIHWPEVKVINSAEIDSPFAGKTVVLTGSMSTLSRDD 623

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A++ +  LGA V+  +S+KTD++I G+  GSKL KA +LG+K+++EE+ + LL 
Sbjct: 624 AKDKLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKATELGIKVIDEEELIRLLN 677


>gi|168261543|ref|ZP_02683516.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205349337|gb|EDZ35968.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 671

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|238912842|ref|ZP_04656679.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 671

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLERLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGINVIDEAEMIRLL 669


>gi|224583040|ref|YP_002636838.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|254781413|sp|C0PZB4|DNLJ_SALPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|224467567|gb|ACN45397.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
          Length = 671

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|304398312|ref|ZP_07380186.1| DNA ligase, NAD-dependent [Pantoea sp. aB]
 gi|304354178|gb|EFM18551.1| DNA ligase, NAD-dependent [Pantoea sp. aB]
          Length = 672

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 246/712 (34%), Positives = 391/712 (54%), Gaps = 49/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +  ++ L   + +H+  Y+    P + D+EYD L R    +    PDL     P+ 
Sbjct: 1   MKSVQDHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRQLEEEHPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G        +V H +P LSL+  ++      F  R+      K+   I +  E K
Sbjct: 58  PTQRVGAAPLTVFEQVRHEVPMLSLDNAFDEATFMAFNKRVQDRL--KNSEDITYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GE+++A +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGAAVSLMYENGLLVQAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           +++  F  LN+E      K +ANPRNAA+G LR+L+P     R L FF +G G       
Sbjct: 176 MTQRGFEKLNEEARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  LQ+ +  G PV++ +++ +     +++Y E++  R  L +DIDG+V KVD  +
Sbjct: 236 PHSHMARLQQFKAWGLPVSDRIKRVHNAEEALAFYREIEQQRPNLGFDIDGVVIKVDSQA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW I+ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWAIAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GDRV+++RAG+VIP+VV++++ ER  + +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDRVVIRRAGDVIPQVVNVVIAERPEETREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          +  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PAHCPVCGSEVERVEGE------SVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ D++ K ++ +L
Sbjct: 459 IDQLVEKE----YVSTPADLFRLTA------GKLTGLDRMGPKSAQNVVDALEKAKSTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++   Q               D  +LI VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAANLANHFGELQKVMDA----------DLEALIAVPDVGKVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F +   N   +  L +E+     +      + + S    K +V TG+L ++ R  A
Sbjct: 559 HVRNFMEEESNREVIRQLTEEIGIHWPQVVVVKAEEIDSPFAGKTVVLTGSLSQMNRDDA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL
Sbjct: 619 KAQLVALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670


>gi|149184723|ref|ZP_01863041.1| DNA ligase [Erythrobacter sp. SD-21]
 gi|148832043|gb|EDL50476.1| DNA ligase [Erythrobacter sp. SD-21]
          Length = 690

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 274/717 (38%), Positives = 404/717 (56%), Gaps = 34/717 (4%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P++ ++  +A  EL  L + I+ H+  Y+    P I D E+DAL RR   +   FP L R
Sbjct: 6   PVD-MTEAEAANELMRLARAIAKHNKLYHAEDAPEITDQEFDALVRRNAELEEQFPHLVR 64

Query: 68  SEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               + P   +G E+  S L KVTH +  +SL+  ++ E++ +++ R+ RF    +   +
Sbjct: 65  E---DSPSKVVGHEIAASPLSKVTHEVRMMSLDNAFSGEEVAEWVARVRRFLSLDESEEV 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
             T E KIDG   ++RYEKG+ V AA RGDG  GEDV+  I  I  IP+ LS ++PE+ E
Sbjct: 122 AITAEDKIDGLSCSLRYEKGRLVRAATRGDGQVGEDVTPNIAHIADIPQQLSGDVPEVFE 181

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           +RGEVY++K DF ALN      G K +ANPRNAA+G LR+ + +    R L F+ HG G 
Sbjct: 182 IRGEVYMAKADFSALNAAQEDAGGKLFANPRNAAAGSLRQKDASVTAKRPLRFWAHGWGA 241

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S +    Q E+++++   G PV+    + +    ++++Y ++   R  LPY+IDG+VYK
Sbjct: 242 ASAVPGATQEEVVRQIENWGVPVSPLFTRVHDVEAMLAHYAKIAKERPDLPYEIDGVVYK 301

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD    Q++LG  A++PRW ++HKF  +QA T L  IDIQ+GRTG LTPV RL PV +GG
Sbjct: 302 VDRLDYQQRLGFVAKAPRWALAHKFPAEQAETTLEAIDIQVGRTGKLTPVGRLAPVLVGG 361

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +TN TLHN D I  L            +R GDRV+V+RAG+VIP++  +    R    
Sbjct: 362 VTVTNVTLHNRDEIARL-----------GVRPGDRVVVQRAGDVIPQL--VDNLTRETSR 408

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +PF+FP  CP C S  V +            RCTGGL C AQ+ ERLKHFVSR A +I+G
Sbjct: 409 EPFAFPDHCPECGSEAVAEEGE------VDVRCTGGLICPAQRTERLKHFVSRGALDIDG 462

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++ +D FF        +  PADIF L +R+      I  + G+ + SV  L DSI  R
Sbjct: 463 LGEKTIDQFF----ALGWLESPADIFHLHQRRD----AILALEGWQERSVDKLVDSIEAR 514

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R     R +F LGIRHVGA  AR L K++       +      A + +   SL  +  +G
Sbjct: 515 RAPDAARLLFGLGIRHVGAVTARDLMKHFHELPALREAAEAAHAGDEEAAASLTSIDGIG 574

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             + +A+ +F+    N    + ++ EV+P     E    S +  K +VFTG L+ + R +
Sbjct: 575 GAVVEALGDFFHEDHNKAVWDDIISEVTPPPYIVE-TKESPVSGKTVVFTGKLETMSRDE 633

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+    +LGA  S  +S KTD+++ G   GSKL+KA  LG+K+++E  +  ++ +  
Sbjct: 634 AKAQAERLGAKASGSVSAKTDLLVAGPGAGSKLKKAADLGIKVIDEAGWAKIVAEAG 690


>gi|328473436|gb|EGF44284.1| NAD-dependent DNA ligase LigA [Vibrio parahaemolyticus 10329]
          Length = 670

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 251/713 (35%), Positives = 392/713 (54%), Gaps = 48/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E   + L  L++ + YH   YY    P I D+EYD L R    I    PDL      
Sbjct: 1   MS-ESVHQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTV--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+      +VTH +P LSL+  ++  +L  F  R       +      +  E
Sbjct: 57  DSPSQRVGGKPLSEFSQVTHEVPMLSLDNAFDDSELDSFHKRAQDRIGGESIKQ--YCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L  +  P  +EVRGE
Sbjct: 115 PKLDGLAVSLLYENGILVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249
           V++ K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G     
Sbjct: 175 VFMPKAGFEKLNELARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGA 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A   YE   +++  G P+    ++ ++   + +YY ++   R  LPY+IDG+V K+D+
Sbjct: 235 DLAASHYERFLQIKSWGLPMCQETKRVDSLADVKTYYQDILQRRDALPYEIDGVVIKIDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            ++Q +LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  +
Sbjct: 295 IAVQDRLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            +++GD+V+++RAG+VIP+VV +I   R   A+  
Sbjct: 355 SNATLHNADEIERLQ-----------VKIGDQVVIRRAGDVIPQVVSVIKERRPETARDI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+C S V R          A  RCTGGL C AQ+ + LKHFVSR A +++GLG 
Sbjct: 404 IFPTQCPVCGSHVERIEGE------AVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGD 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L      S   +  +   G  S  N+ +++ K +  
Sbjct: 458 KVIEQLVDRE----MVETPADLFKL------SAGVLTVLERMGPKSAQNIVNALEKSKLT 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA+++ S +                   LI V  +G ++
Sbjct: 508 TLPRFLYSLGIREVGEATAANLAQHFKSLEAIQAATE----------EQLIAVQDIGVVV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A+ I  F++  +N   V+ LL +    P +   E+     +E K +V TGTL ++ R +A
Sbjct: 558 AKHITTFFEEEQNQAVVQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLTGTLSQLGRTEA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L+ 
Sbjct: 618 KEALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELIN 670


>gi|28897574|ref|NP_797179.1| NAD-dependent DNA ligase LigA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260878266|ref|ZP_05890621.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AN-5034]
 gi|260895418|ref|ZP_05903914.1| DNA ligase (NAD+) [Vibrio parahaemolyticus Peru-466]
 gi|260903353|ref|ZP_05911748.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AQ4037]
 gi|81728289|sp|Q87RJ4|DNLJ_VIBPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28805786|dbj|BAC59063.1| DNA ligase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088617|gb|EFO38312.1| DNA ligase (NAD+) [Vibrio parahaemolyticus Peru-466]
 gi|308090169|gb|EFO39864.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AN-5034]
 gi|308107994|gb|EFO45534.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AQ4037]
          Length = 670

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 251/713 (35%), Positives = 392/713 (54%), Gaps = 48/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E   + L  L++ + YH   YY    P I D+EYD L R    I    PDL      
Sbjct: 1   MS-ESVHQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTV--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+      +VTH +P LSL+  ++  +L  F  R       +      +  E
Sbjct: 57  DSPSQRVGGKPLSEFSQVTHEVPMLSLDNAFDDSELDSFHKRAQDRIGGESIKQ--YCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L  +  P  +EVRGE
Sbjct: 115 PKLDGLAVSLLYENGILVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249
           V++ K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G     
Sbjct: 175 VFMPKAGFEKLNELARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGA 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A   YE   +++  G P+    ++ ++   + +YY  +   R  LPY+IDG+V K+D+
Sbjct: 235 DLAASHYERFLQIKSWGLPMCPETKRVDSLADVKTYYQHILQRRDALPYEIDGVVIKIDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            ++Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  +
Sbjct: 295 IAVQERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            +++GD+V+++RAG+VIP+VV +I   R   A+  
Sbjct: 355 SNATLHNADEIERLQ-----------VKIGDQVVIRRAGDVIPQVVSVIKERRPETARDI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+C S V R          A  RCTGGL C AQ+ + LKHFVSR A +++GLG 
Sbjct: 404 IFPTQCPVCGSHVERIEGE------AVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGD 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L      S   +  +   G  S  N+ +++ K +  
Sbjct: 458 KVIEQLVDRE----MVETPADLFKL------SAGVLTVLERMGPKSAQNIVNALEKSKLT 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA+++ S +                   LI V  +G ++
Sbjct: 508 TLPRFLYSLGIREVGEATAANLAQHFKSLEAIQAATE----------EQLIAVQDIGVVV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A+ I  F++  +N   V+ LL +    P +   E+     +E K +V TGTL ++ R +A
Sbjct: 558 AKHITTFFEEEQNQAVVQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLTGTLSQLGRTEA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L+ 
Sbjct: 618 KEALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELIN 670


>gi|56412686|ref|YP_149761.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197361620|ref|YP_002141256.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81362021|sp|Q5PNE2|DNLJ_SALPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781414|sp|B5BB72|DNLJ_SALPK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56126943|gb|AAV76449.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197093096|emb|CAR58535.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
          Length = 671

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 669


>gi|168231967|ref|ZP_02657025.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194471791|ref|ZP_03077775.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194458155|gb|EDX46994.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205333574|gb|EDZ20338.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 671

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 243/712 (34%), Positives = 392/712 (55%), Gaps = 48/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL 
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLLD 670


>gi|291618312|ref|YP_003521054.1| LigA [Pantoea ananatis LMG 20103]
 gi|291153342|gb|ADD77926.1| LigA [Pantoea ananatis LMG 20103]
          Length = 672

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 251/712 (35%), Positives = 403/712 (56%), Gaps = 49/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++ ++ L   + +H+  Y+    P + D+EYD L R    +    PDL     P+ 
Sbjct: 1   MKSVQEHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEEQHPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G    +   +V H +P LSL+  ++    R F  R+    +  DD  + +  E K
Sbjct: 58  PTQRVGAAPLMVFEQVRHEVPMLSLDNAFDEASFRAFNKRVQDRLKSSDD--LVYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE++++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGLLTRAATRGDGTTGENITSNVRTIRAIPLRLKGENIPARVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           +++N F  LN E      K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MTQNGFEKLNAEARRTEGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     LQ+ +  G PV++ +R  +     +++Y+E+ + R+ L +DIDG+V KVD   
Sbjct: 236 PRSHMARLQQFKAWGLPVSDRIRLVHNVDEALAFYHEVDAQRAELGFDIDGVVIKVDSQD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW ++ KFA ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEKLGFVARAPRWAVAFKFAAQEQMTIVRDVEFQVGRTGAITPVARLEPVQVAGVMVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++V+ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVVSERPEDAREILF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A ++EG+G + 
Sbjct: 405 PSHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRAMDVEGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     ++ PAD+F L R   T       +   G  S  N+ D++ K ++ +L
Sbjct: 459 IDQLVEKE----YVKTPADLFRLTRETLTG------LDRMGAKSAQNVVDALEKAKSTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++   Q               D  +LI V  VG ++A+
Sbjct: 509 ARFLYALGIREVGEATAANLANHFGELQKVMDA----------DLDALIAVQDVGTVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F +   N   +  L++++  +    +    + + S    K +V TG+L ++ R  A
Sbjct: 559 HVRHFMEEESNRDVIRQLVEDIGINWPQVMVVKAEEIDSPFAGKTVVLTGSLSQMNRDDA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +T+LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL
Sbjct: 619 KARLTELGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670


>gi|301155433|emb|CBW14899.1| DNA ligase, NAD(+)-dependent [Haemophilus parainfluenzae T3T1]
          Length = 667

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 254/705 (36%), Positives = 402/705 (57%), Gaps = 45/705 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++ +L Q++  ++  Y+    P I D+EYD L  +  A+  A P+L  +   + P  +
Sbjct: 4   QQQIDTLRQDLRRYEYEYHVLDNPTIPDAEYDRLFHQLKALEAAHPELITA---DSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G +      ++ H IP LSL+  ++ E+   F+ RI     +  D  + F  EPK+DG 
Sbjct: 61  VGAKPLSGFAQIRHEIPMLSLDNAFSDEEFYAFVKRIEDRLIRLPD-PLTFCCEPKLDGL 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196
            ++I Y  G    AA RGDG +GED++A IR I  IP  L   N P  +EVRGEV++   
Sbjct: 120 AVSILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLQLLMDNPPARLEVRGEVFMPHE 179

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF-AKGQ 254
            F  LN + +  G K +ANPRNAA+G LR+L+P   ++       +G+G    +      
Sbjct: 180 GFERLNQQALEKGEKTFANPRNAAAGSLRQLDPKITSKRPLVLNAYGIGIAEGVDLPNTH 239

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           Y+ LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +LQ++
Sbjct: 240 YDRLQWLKSIGIPVNPEIRLCNGTDEVLDFYRDIQNKRSSLGYDIDGTVLKINDIALQEK 299

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +++PRW I++KF  ++  TRL D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 300 LGFISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 359

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L           DI +GD V+++RAG+VIP+++ ++ + R  DA+P  FP  C
Sbjct: 360 NGDEIERL-----------DIAIGDMVVIRRAGDVIPQIIGVLHDRRPADARPIVFPETC 408

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S +VR          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++  
Sbjct: 409 PVCDSAIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQL 462

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     I  PAD+F L        T +  +   G  S  N   S+ K +N +L RF+
Sbjct: 463 VDRE----LIHTPADLFKL------DLTALTRLERMGTKSAENALASLEKAKNTTLARFV 512

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A +LA ++ + +               D  +L +VP VG+++A  I+ 
Sbjct: 513 FALGIREVGEATALNLANHFKTLEALQNA----------DLEALQQVPDVGEVVANRILA 562

Query: 615 FYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+  P N+  V  L+ +         ++ + +  + K +V TGTL ++ R++A+  +  +
Sbjct: 563 FWHEPHNVAVVNDLIAQGVHWETVEAKEVIENRFKGKTVVLTGTLTQMGRNEAKALLQDM 622

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           GA VS  +S KTD +I GD  GSKL KAQ+LGV ++ EE+FL  +
Sbjct: 623 GAKVSGSVSAKTDFVIAGDAAGSKLTKAQELGVTVLTEEEFLAQI 667


>gi|327394702|dbj|BAK12124.1| DNA ligase LigA [Pantoea ananatis AJ13355]
          Length = 672

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 251/712 (35%), Positives = 403/712 (56%), Gaps = 49/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++ ++ L   + +H+  Y+    P + D+EYD L R    +    PDL     P+ 
Sbjct: 1   MKSVQEHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEEQHPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G    +   +V H +P LSL+  ++    R F  R+    +  DD  + +  E K
Sbjct: 58  PTQRVGAAPLMVFEQVRHEVPMLSLDNAFDEASFRAFNKRVQDRLKSSDD--LVYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE++++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGLLTRAATRGDGTTGENITSNVRTIRAIPLRLKGENIPARVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           +++N F  LN E      K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MTQNGFEKLNAEARRTEGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     LQ+ +  G PV++ +R  +     +++Y+E+ + R+ L +DIDG+V KVD   
Sbjct: 236 PRSHMARLQQFKAWGLPVSDRIRLVHNVDEALAFYHEVDAQRAELGFDIDGVVIKVDSQD 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW ++ KFA ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEKLGFVARAPRWAVAFKFAAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVMVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++V+ER  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVVSERPEDAREILF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A ++EG+G + 
Sbjct: 405 PSHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRAMDVEGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     ++ PAD+F L R   T       +   G  S  N+ D++ K ++ +L
Sbjct: 459 IDQLVEKE----YVKTPADLFRLTRETLTG------LDRMGAKSAQNVVDALEKAKSTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++   Q               D  +LI V  VG ++A+
Sbjct: 509 ARFLYALGIREVGEATAANLANHFGELQKVMDA----------DLDALIAVQDVGTVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F +   N   +  L++++  +    +    + + S    K +V TG+L ++ R  A
Sbjct: 559 HVRHFMEEESNRDVIRQLVEDIGINWPQVMVVKAEEIDSPFAGKTVVLTGSLSQMNRDDA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +T+LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL
Sbjct: 619 KARLTELGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670


>gi|194289797|ref|YP_002005704.1| DNA ligase [Cupriavidus taiwanensis LMG 19424]
 gi|254781303|sp|B3R2C2|DNLJ_CUPTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193223632|emb|CAQ69639.1| DNA ligase [Cupriavidus taiwanensis LMG 19424]
          Length = 709

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 252/709 (35%), Positives = 378/709 (53%), Gaps = 54/709 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            ++ L +E+  H+  YY    P + D+EYDAL     A+    P+L   + P+ P  ++G
Sbjct: 27  RVAWLREELDRHNYQYYVLDAPTVPDAEYDALFSELMALELEHPEL---QTPDSPTQRVG 83

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----------NSIFF 128
           GE   +   V H +P LSL   +  ED+  F  R  +   +              +++ +
Sbjct: 84  GEPLSAFDSVRHRVPMLSLNNAFADEDVLNFDRRCAQGLGRTAPAAGEADLFSAADAVEY 143

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E K DG  +++RYE G+ V AA RGDG +GEDV+  +R I  IP  L    P ++EVR
Sbjct: 144 ACELKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTVNVRTIKAIPLKLRGQAPAVLEVR 203

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV++ + DF  LN      G K + NPRNAA+G LR+L+P     R L+FF +GLG+  
Sbjct: 204 GEVFMFRRDFDKLNARQAEAGEKTFVNPRNAAAGSLRQLDPRITARRPLSFFAYGLGELQ 263

Query: 248 -EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                     ML     LG PV           G++ +Y ++   R  LPYDIDG+VYKV
Sbjct: 264 GVERPPTHSAMLDGFAALGLPVCKDRAVVKGAQGLLDFYRDIGKRRDDLPYDIDGVVYKV 323

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  + Q++LG  +R+PR+ ++HKF  ++ +T + DI++Q+GRTG +TPVARL PV +GG 
Sbjct: 324 NALAEQERLGFVSRAPRFALAHKFPAQEMTTVVEDIEVQVGRTGAITPVARLRPVFVGGV 383

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +TNATLHNED I+            +D+ VGD V+V+RAG+VIP+VV ++   R  DA+
Sbjct: 384 TVTNATLHNEDEIRR-----------KDVHVGDTVIVRRAGDVIPEVVAVVAERRPADAR 432

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  P+ CP+C S + +  +       A  RCTGGL C+AQ+ + L HF  R A +IEGL
Sbjct: 433 AFVMPTACPVCGSHIEKLEDE------AIARCTGGLICAAQRKQSLLHFAQRRAMDIEGL 486

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++           +R PAD++ L         K+  +    D S  NL  +I+K R
Sbjct: 487 GDRLVEQLVDQ----GIVRTPADLYKL------GVAKLAALERMADKSAANLVAAIDKSR 536

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             ++ RFIF+LGIRHVG   A+ LA+++                   D  +L+ V  VG 
Sbjct: 537 ATTMNRFIFALGIRHVGEATAKDLARHFGKLDALMAA----------DEAALLEVNDVGP 586

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++AQ+I  F+  P N+  +E L                 + +  K  V TGTL  + R  
Sbjct: 587 VVAQSIAHFFAEPHNVEVIEQLRAAGVHWPESEPVAKSPAPLSGKTFVLTGTLPTLSRED 646

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           A+E +   GA V+  +S+KTD ++ G   GSKL+KA+ LGV +++E   
Sbjct: 647 AKELLEAAGAKVAGSVSKKTDYVVAGAEAGSKLDKAEALGVPVLDEAGM 695


>gi|168243193|ref|ZP_02668125.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449589|ref|YP_002046491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|254781411|sp|B4TCF6|DNLJ_SALHS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194407893|gb|ACF68112.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205337689|gb|EDZ24453.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 671

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQTAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|194444893|ref|YP_002041687.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|254781412|sp|B4SZU5|DNLJ_SALNS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194403556|gb|ACF63778.1| DNA ligase [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 671

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 669


>gi|255264005|ref|ZP_05343347.1| DNA ligase, NAD-dependent [Thalassiobium sp. R2A62]
 gi|255106340|gb|EET49014.1| DNA ligase, NAD-dependent [Thalassiobium sp. R2A62]
          Length = 711

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 291/715 (40%), Positives = 427/715 (59%), Gaps = 18/715 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I ++ L+   A  EL+ L   +   +D Y+    P + D+EYDALKRR  AI   FPDL 
Sbjct: 13  IDVDDLTRTAATDELTWLSYVLGQANDDYHGSDAPQMSDAEYDALKRRNMAIEARFPDLK 72

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R    + P +++G        K+TH +  LSL   +  ED+ +F  R+ ++   +D  ++
Sbjct: 73  RG---DSPSDQVGAAPIDGFGKITHVVRMLSLGNAFTDEDVVEFDRRVRKYLGLED--AL 127

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +T EPKIDG  +++RYE G  + AA RGDG  GEDV+A  R +  IP+ L    P+++E
Sbjct: 128 AYTAEPKIDGLSLSLRYEGGVLIQAATRGDGAVGEDVTANARMVQDIPQTLKNA-PDVLE 186

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+S  DF  LN    A G K +ANPRNAA+G LR+LN      R L FF +  G 
Sbjct: 187 VRGEVYMSHADFEDLNTRQEARGAKSFANPRNAAAGSLRQLNAEITKDRPLRFFAYASGD 246

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A  Q   ++++  LGF  N   +  +    ++++Y  ++  R+TL YDIDG+VYK
Sbjct: 247 LSAPLADTQNAAIERLAALGFSTNPLTQLCDDPEAMIAHYRRIEEQRATLGYDIDGVVYK 306

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++  LQ++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL+PV +GG
Sbjct: 307 VNDLGLQRRLGFRSTTPRWAIAHKFPAELAWTTLEAIDIQVGRTGALSPVARLKPVTVGG 366

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYIKGLD+ G  +R GRDI VGD V + RAG+VIPK+ D+ + +R   A
Sbjct: 367 VVVSNATLHNEDYIKGLDSKGAPIREGRDIWVGDWVQIYRAGDVIPKICDVDLAKRLATA 426

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           Q + FP  CP C S  VR+         A  RC GG+ C AQ +E+LKHFVSR  F+I+G
Sbjct: 427 QAYEFPETCPECGSHAVREEG------DAVRRCVGGMICPAQAVEKLKHFVSRGGFDIDG 480

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F         ++ PADIFTL+ R  +   +++N  G+GD S +NL+D+I+ +
Sbjct: 481 LGAKQVEQFHSDA----WVKEPADIFTLRDRFGSGLQQLKNREGWGDKSASNLFDAIDDK 536

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R I L R IF+LGIRHVG   A  +A  Y ++  F   +   +    D W +LI +  VG
Sbjct: 537 RRIGLGRLIFALGIRHVGDASANLIANRYGTWSAFEGAMTAAVIGEGDAWETLIDIDGVG 596

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            ++A ++V   Q      +++ L+  +       +    S +  K +VFTG+L+K+ R +
Sbjct: 597 AVMAGSLVRAMQEEAERASIDRLVAHLDVQ-EAVQVTSDSPVAGKTVVFTGSLEKMTRAE 655

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+     LGA VS  +S KTD+++ G   GSK +KA  LGV+ ++E+ +L L+  
Sbjct: 656 AKARAESLGAKVSGSVSAKTDLLVAGPGAGSKAKKAADLGVETIDEDDWLALIGD 710


>gi|207857840|ref|YP_002244491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|254781409|sp|B5R3V4|DNLJ_SALEP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206709643|emb|CAR33993.1| DNA ligase [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
          Length = 671

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQTAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + V S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEVDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|120554094|ref|YP_958445.1| DNA ligase, NAD-dependent [Marinobacter aquaeolei VT8]
 gi|166215819|sp|A1TZT9|DNLJ_MARAV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120323943|gb|ABM18258.1| DNA ligase, NAD-dependent [Marinobacter aquaeolei VT8]
          Length = 678

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 252/720 (35%), Positives = 393/720 (54%), Gaps = 48/720 (6%)

Query: 12  LS--IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           ++   E  RK + SL   +  H+  YY    P I D+EYD L R    +    P+LA   
Sbjct: 1   MTNVPETIRKRVDSLRATLEDHNYYYYVQDDPRIPDAEYDRLFRELQKLEAEHPELA--- 57

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++G     S  +V H +P LSL+  ++ ++LR F  R+        D +I + 
Sbjct: 58  TEDSPTRRVGSSAETSFEEVIHRLPMLSLDNAFSEDELRDFDRRVRDRLG--ADGAIEYV 115

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            EPK+DG  +++ YE G    AA RGDG++GED++A IR IP++P  L  +  P+++EVR
Sbjct: 116 CEPKLDGLAVSLHYENGTLTRAATRGDGYTGEDITANIRTIPSVPLKLRGSGYPDLVEVR 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+ +  F  LN+ +   G K + NPRNAA+G LR+   T    R L    + +  T 
Sbjct: 176 GEVYMPRAGFEKLNERLAEQGEKTFVNPRNAAAGSLRQKKSTVTARRPLELCAYSMAVTD 235

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           E    +  ++ LQ +R  GF +N  +R+A      +  YNE+ + R +LPY+IDG+V+KV
Sbjct: 236 ESVLPETHWDSLQLVRDWGFRINPEMRKAEGVEACLDAYNELMAKRDSLPYEIDGIVFKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +   LQ++LG  +R+PRW I+HKF  ++  T + D++ Q+GRTG +TPVARL+PV +GG 
Sbjct: 296 NRLDLQQELGFVSRAPRWAIAHKFPAQEELTIIEDVEFQVGRTGAVTPVARLKPVFVGGV 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN D I+ L           D+ +GD V ++RAG+VIP+VV ++  +R  +A 
Sbjct: 356 TVSNATLHNMDEIRRL-----------DVHIGDTVFIRRAGDVIPQVVKVVPEKRPAEAP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S +V+          A  RC+GGL C AQ+ E ++H+ SR A +IEGL
Sbjct: 405 MVEMPEHCPVCGSDIVQIEGE------AVARCSGGLYCPAQRKEAIRHYASRKAMDIEGL 458

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++           +   AD++ L + Q  S      +   GD S  NL  +I++ R
Sbjct: 459 GDRLIEVLVDE----GMVSTVADLYRLTKFQIAS------LERMGDKSAANLIAAIDRSR 508

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L RF+++LGIR VG   A+ LA ++ + +  +            D  +L  VP VG 
Sbjct: 509 EPVLWRFLYALGIREVGEATAKGLAAHFGTLEAISAA----------DEETLQTVPDVGP 558

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHK 665
           I+A  I  F+  P N   + AL +           +     +  +  V TGTL  + R +
Sbjct: 559 IVAGHIRSFFDQPHNQETLAALKEAGVTWQEEQVLSADEQPLNGQTWVLTGTLSGMTRDQ 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           A+E + QLGA V+  +S+KT  ++ G+  GSKL KA+QLGV +++EE    LL+++   +
Sbjct: 619 AKEKLEQLGAKVAGSVSKKTACVVAGEAAGSKLAKAEQLGVPVLDEEGLANLLREHGIEV 678


>gi|254440003|ref|ZP_05053497.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 307]
 gi|198255449|gb|EDY79763.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 307]
          Length = 706

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 294/712 (41%), Positives = 432/712 (60%), Gaps = 15/712 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
             IE L+ ++A +EL+ L   ++  +  Y+Q   P I D++YDALK R   I   F DL 
Sbjct: 5   TSIENLTKDEAAQELARLSALLAQANAEYHQADAPRIPDADYDALKLRNAMIEARFSDLK 64

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R    + P   +G        KV H++  LSL   +  +D+ +F   + +F    +   +
Sbjct: 65  RR---DSPSETVGATPADGFGKVPHALRMLSLGNAFTDDDVTEFDKSVRKFLGL-ETGDL 120

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  +++RYE GK V AA RGDG  GE+V+A  R I  +P+VL    P+I+E
Sbjct: 121 AFTAEPKIDGLSLSLRYENGKLVQAATRGDGAVGENVTANARTIKDVPQVLLDA-PKILE 179

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+S +DF ALN     VG K +ANPRNAA+G LR+L+ +   +R L FF +  G+
Sbjct: 180 VRGEVYMSHSDFAALNTRQSNVGSKTFANPRNAAAGSLRQLDASITKSRPLKFFAYAWGE 239

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A  Q   + +++ LGF  N   +   +   ++++Y +++  R+TL YDIDG+VYK
Sbjct: 240 VSAPLADTQSGAIARLKTLGFQTNPLTKICASPSEMIAHYRDIEMQRATLGYDIDGVVYK 299

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ SLQ++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL PV +GG
Sbjct: 300 VDDLSLQRRLGFRSTTPRWAIAHKFPAELAWTTLDAIDIQVGRTGALSPVARLSPVTVGG 359

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHNEDYI G    G  +RGG+DIRVGD V + RAG+VIPKV D+ +++R  + 
Sbjct: 360 VVVANATLHNEDYIAGRGNKGDDIRGGKDIRVGDWVQIYRAGDVIPKVADVDLSKRLGET 419

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            PF FP+ CP C S  VR+            RCTGGL C AQ +E+LKHFVSR AF+I+G
Sbjct: 420 APFDFPTTCPKCGSDAVREEG------DVVRRCTGGLICPAQAVEKLKHFVSRAAFDIDG 473

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F+   D   +++ PADIFTL  R   S TK+ N  G+GD SV  L+ +++++
Sbjct: 474 LGAKQIEAFYN--DDQLAVKEPADIFTLGARDMGSLTKLANRDGWGDTSVKKLWQAVDEK 531

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R I + R IF+LGIRHVG   +  LA +Y ++  F   +          W  L+ +  VG
Sbjct: 532 REIPVARLIFALGIRHVGENASNLLAIHYGTWSTFEDAMTQASVGEGAGWDDLLGIDGVG 591

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            ++A ++V  +       +++ L+ ++ P      ++ +S +  K +VFTG+L+K+ R +
Sbjct: 592 AVMAASVVTTFHQSAERASIDRLVAQLRPQDSARPRS-NSPVAGKTVVFTGSLEKMTRAE 650

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           A+     LGA VS  +S KTD++I G   GSK +KA  LG++ M+E+ +L L
Sbjct: 651 AKARAESLGAKVSGSVSAKTDLLIAGPGAGSKAKKATDLGIETMDEDGWLAL 702


>gi|20807100|ref|NP_622271.1| NAD-dependent DNA ligase [Thermoanaerobacter tengcongensis MB4]
 gi|81482513|sp|Q8RC42|DNLJ_THETN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|20515592|gb|AAM23875.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Thermoanaerobacter tengcongensis MB4]
          Length = 666

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 249/709 (35%), Positives = 383/709 (54%), Gaps = 49/709 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E+ARK +  L ++I+YH+  YY   +P I D EYD L R    +   +P+      P
Sbjct: 1   MDREEARKRIEELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEFK---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE        TH +P LSL   +  E++++F  R+           + + +E
Sbjct: 58  DSPSQRVGGEPLDEFEPFTHIVPMLSLANAFTAEEIKEFDRRVKEAVG-----EVEYVVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  + + YE G F   + RGDG  GE+V+  ++ I +IP  L  ++   + VRGEV
Sbjct: 113 PKIDGLSVELVYENGMFTVGSTRGDGIVGENVTPNLKTIKSIPLRLKDSVN--LVVRGEV 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ K  F  LN+E    G   +ANPRNAA+G +R+L+P     R L+ F+  L +     
Sbjct: 171 FMPKASFAKLNEERAERGESLFANPRNAAAGSVRQLDPKVTAKRDLDIFIFNLQRIEGRD 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   E L+ ++  GF V   +++  T   ++    E+  ++ +LPYDIDG V KV+E  
Sbjct: 231 FKTHVEALEFLKEQGFKVIPLIKKCTTIEEVIKAIEELGEMKDSLPYDIDGAVIKVNELD 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG+ A+  RW I+ K+  +   T+++DI +Q+GRTG LTP A LEPV I G++++ 
Sbjct: 291 KREILGQTAKDYRWAIAFKYPAEMKKTKIVDIVVQVGRTGALTPTAVLEPVVISGSVVSR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYIK            +DIR+GD VLV +AG +IP+VV+++  ER  D + F  
Sbjct: 351 ATLHNEDYIK-----------EKDIRIGDTVLVHKAGGIIPEVVEVVKEERTGDEKAFVM 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C +  VR          A  RCTG L C AQ   R+ HF S+DA +IEGLG   
Sbjct: 400 PDKCPECGALAVRLPGE------AVRRCTG-LNCPAQIARRIIHFASKDAMDIEGLGPAI 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +            I+  AD++ L+ R   +      +   GD S  NL ++I K +   L
Sbjct: 453 ISQLLSK----GLIQNVADLYYLKYRDLIT------LERMGDKSARNLLEAIEKSKKRDL 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +R +F LGI  +G++ A+ +A+++ S  N  +            +   + +P +G  +A+
Sbjct: 503 DRLLFGLGINLIGSKAAQVIAEHFKSMDNIMKA----------KYEDFLELPDIGPKMAR 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +IV F+   +N   VE L +            VS+  E K  V TG L+   R +A   +
Sbjct: 553 SIVTFFSEEQNRRVVERLKEAGVNMEKLSTGKVSNIFEGKIFVLTGALKNYTRDEAARLI 612

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G  V+  +S+KTD +IVG +PGSKL+KAQ+LGVKI+NEEQF  +L+
Sbjct: 613 VERGGKVTNSVSKKTDYLIVGADPGSKLKKAQELGVKIINEEQFEAMLK 661


>gi|205353534|ref|YP_002227335.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|254781410|sp|B5RCP9|DNLJ_SALG2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|205273315|emb|CAR38285.1| DNA ligase [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|326628629|gb|EGE34972.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 671

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIEQL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQTAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|16761347|ref|NP_456964.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|81513487|sp|Q8Z4W4|DNLJ_SALTI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|25294013|pir||AI0809 DNA ligase (NAD) (EC 6.5.1.2) - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16503646|emb|CAD07659.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 671

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P ILD+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQTGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|167549563|ref|ZP_02343322.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205325268|gb|EDZ13107.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 671

 Score =  578 bits (1490), Expect = e-163,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLETLQAAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 669


>gi|322613832|gb|EFY10771.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617441|gb|EFY14340.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624929|gb|EFY21758.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629628|gb|EFY26404.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633942|gb|EFY30679.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635621|gb|EFY32332.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639981|gb|EFY36651.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644326|gb|EFY40867.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322655311|gb|EFY51620.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658357|gb|EFY54623.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664357|gb|EFY60554.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668412|gb|EFY64568.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673252|gb|EFY69358.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676644|gb|EFY72712.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683394|gb|EFY79408.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685720|gb|EFY81713.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192602|gb|EFZ77831.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196835|gb|EFZ81978.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202141|gb|EFZ87199.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208024|gb|EFZ92969.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212850|gb|EFZ97659.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217119|gb|EGA01841.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219619|gb|EGA04102.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323229192|gb|EGA13316.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235493|gb|EGA19577.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237321|gb|EGA21384.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245552|gb|EGA29550.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248968|gb|EGA32891.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253065|gb|EGA36897.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255865|gb|EGA39610.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261411|gb|EGA44996.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266454|gb|EGA49942.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269716|gb|EGA53166.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 671

 Score =  578 bits (1490), Expect = e-163,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H IP LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEIPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  +GA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVAVGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|29140957|ref|NP_804299.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213160907|ref|ZP_03346617.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213424270|ref|ZP_03357114.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213583650|ref|ZP_03365476.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213650852|ref|ZP_03380905.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|29136582|gb|AAO68148.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
          Length = 671

 Score =  578 bits (1490), Expect = e-163,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P ILD+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|206560458|ref|YP_002231222.1| DNA ligase [Burkholderia cenocepacia J2315]
 gi|254781275|sp|B4ECN6|DNLJ_BURCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|198036499|emb|CAR52396.1| DNA ligase [Burkholderia cenocepacia J2315]
          Length = 691

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 256/713 (35%), Positives = 384/713 (53%), Gaps = 52/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
              + L  ++   +  YY   +P + D+EYD L R    +    P+L     P+ P  ++
Sbjct: 15  ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELV---TPDSPTQRV 71

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132
           GGE       V H  P LSL   +  ED+  F  R+     K  D      + + +  E 
Sbjct: 72  GGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKATDLAGSVTDPVEYACEL 131

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191
           K DG  I++RYE G FV AA RGDG +GEDV+  +R I +IP  L     P +++VRGEV
Sbjct: 132 KFDGLAISLRYENGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEV 191

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249
            + K DF  LN+   A  ++ +ANPRNAA+G LR+L+      R L+FF +G+G      
Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGMP 251

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +L      G PVN      +   G++ ++ ++   R +LPYDIDG+VYKV+  
Sbjct: 252 MPDTHTALLDWYEAFGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNRR 311

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q++LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +T
Sbjct: 312 DEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F 
Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFV 420

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++
Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +
Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTT 524

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI+ LGIRHVG   A+ LAK++ S                     L+ V  VG I+A
Sbjct: 525 LARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA----------SIEELLEVNDVGPIVA 574

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++I +F+    N   +E L      +        K     +  K +V TGTL  + R  A
Sbjct: 575 ESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAA 634

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+
Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687


>gi|149915267|ref|ZP_01903795.1| DNA ligase, NAD-dependent [Roseobacter sp. AzwK-3b]
 gi|149810988|gb|EDM70827.1| DNA ligase, NAD-dependent [Roseobacter sp. AzwK-3b]
          Length = 720

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 304/716 (42%), Positives = 440/716 (61%), Gaps = 16/716 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P++ LS +QA +EL+ L   ++  D  Y+    PI+ D+ YDAL +R  AI   FPDL R
Sbjct: 17  PVDKLSADQAAQELARLADLVAQADAAYHGQDAPIMSDAAYDALVQRNAAIEARFPDLMR 76

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
               + P  ++G   +    KVTH++  LSL   +  +++R+F  RI R+     + ++ 
Sbjct: 77  E---DSPSRRVGFTPSEGFGKVTHAVRMLSLGNAFEDDEIREFDARIRRYLGLSPEAALT 133

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           +T EPKIDG  +++RYE+G+ V AA RGDG  GE+V+A  R I  IP  L    +PE++E
Sbjct: 134 YTSEPKIDGLSLSLRYEQGRLVQAATRGDGAEGENVTANARTIADIPHDLGGAGVPELLE 193

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+S  DF ALN        K +ANPRNAA+G LR+L+P     R L FF +  G 
Sbjct: 194 VRGEVYMSHADFEALNTRQTERSDKTFANPRNAAAGSLRQLDPKITARRPLKFFAYAWGA 253

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            SE  A  Q E + ++   GF  N      +    +++ Y  ++ +R+ L YDIDG+VYK
Sbjct: 254 HSEPLAPSQMEAIARLAGFGFQTNPLTALCDGPDEMLAQYRRIEQLRAELGYDIDGVVYK 313

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+E +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG
Sbjct: 314 VNEIALQHRLGYRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLHPVTVGG 373

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYI G DA G  +RGG+DIRVGD V V RAG+VIPKV D+ +++R  D+
Sbjct: 374 VVVSNATLHNEDYIAGRDAKGNKIRGGKDIRVGDWVQVYRAGDVIPKVADVDLSKRPEDS 433

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P++FP  CP C S  +R+         A  RCTGGL C AQ +E+LKHFVSR AF+IEG
Sbjct: 434 APYTFPKVCPECGSDAIREEG------DAVRRCTGGLICPAQAVEKLKHFVSRAAFDIEG 487

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSINK 544
           LG +Q++ F         IR PADIFTL+ R      T+++N  G+G+ S  NL+D+I++
Sbjct: 488 LGAKQVEQFHAD----GWIREPADIFTLKDRYGPGCLTQLKNRDGWGEKSAANLFDAIDE 543

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           RR I+L R +F+LGIRHVG   +  LA++Y ++  F   ++   A    DW  L+ +  V
Sbjct: 544 RRRIALGRLLFALGIRHVGEAASMMLARFYGTWDEFTAAMDGAAAGEGPDWDRLLGIDGV 603

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G ++AQ++V  +       +++ L+  +            S +  K +VFTGTL+K+ R 
Sbjct: 604 GKVMAQSLVTTFAQDEERASIDRLVAHLEIERAERPDTDGSPVAGKTVVFTGTLEKMTRA 663

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +A+     LGA VS  +S KTD++I G   GSK + A+QLGV++++E+ +L L+  
Sbjct: 664 EAKARAEALGAKVSGSVSAKTDLVIAGPGAGSKAKAAEQLGVEMIDEDGWLALIGD 719


>gi|197105771|ref|YP_002131148.1| DNA ligase, NAD-dependent [Phenylobacterium zucineum HLK1]
 gi|254781386|sp|B4RFE9|DNLJ_PHEZH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|196479191|gb|ACG78719.1| DNA ligase, NAD-dependent [Phenylobacterium zucineum HLK1]
          Length = 692

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 286/712 (40%), Positives = 416/712 (58%), Gaps = 27/712 (3%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E+L+  +A +EL+ L  EI+ HD  YY+   P I D+ YDAL+RR D +  AFP L R 
Sbjct: 4   VESLTEAEAAEELTRLADEIAAHDIRYYREDAPTISDAAYDALRRRNDELEAAFPHLIRE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  +IG         V H +P LSL+  ++  D  +F  R+ RF +   D  + +
Sbjct: 64  ---NSPSLRIGAARAEQFAPVEHGVPMLSLDNAFSDADALEFDARVKRFLRL--DEEVAY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEV 187
           T EPKIDG   +IRYE G+ V AA RGDG  GEDV+A +R I  IP+ L     PE+IE+
Sbjct: 119 TAEPKIDGLSCSIRYENGRLVRAATRGDGRVGEDVTANVRTIGEIPQKLHGQAWPEVIEI 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+   +F ALN+   + G+K YANPRNAA+G LR+++P     R L FF +  G  
Sbjct: 179 RGEVYLGHAEFAALNEAAASAGQKTYANPRNAAAGSLRQIDPKITAQRPLRFFAYAWGFV 238

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S  FA+ Q+E LQ ++  GF      R      G++  Y EM++ R  L +DIDG+VYKV
Sbjct: 239 SAPFAQTQWEALQALKAWGFRTTPQSRCVKGAEGLMEAYREMEAERPHLGFDIDGVVYKV 298

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D    Q++LG  +R+PRW I+ KF  +QA T L  IDIQ+GRTG LTPVARL PV +GG 
Sbjct: 299 DRLEWQQRLGFVSRAPRWGIARKFPAEQARTVLEAIDIQVGRTGALTPVARLTPVTVGGV 358

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++TNATLHN D I  L           D+RVGD V+++RAG+VIP+++ +I  ER  D+ 
Sbjct: 359 VVTNATLHNADEIARL-----------DVRVGDTVVLQRAGDVIPQILRVIPEERPKDSV 407

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP      V      +G      RC+G  AC  Q++  L HFVSR AF+IEGL
Sbjct: 408 PYDFPHVCPCPLRTEVVRETTASGAETVVRRCSGEFACPFQRINHLLHFVSRRAFDIEGL 467

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++QL  FF+       I+ PADIF L  ++     ++  +   G+ SV NL  +I  RR
Sbjct: 468 GEKQLTAFFER----GWIKAPADIFRLHEKRD----ELLAMERMGETSVGNLLANIEARR 519

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I L+RFI+ LGIRH+G   A  +A+ Y +  +F + ++ + A + +    L  +  +G 
Sbjct: 520 TIGLDRFIYGLGIRHIGETTATVMARGYGTAAHFLEAMDKVAARDPEAVEELDALDQIGG 579

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            + +A   F+    N   VE L  +++       K   + +  K +VFTG L+++ R +A
Sbjct: 580 AVIEAAAAFFGEDHNRAMVEDLAGQLTILDAEKPK-TDTAVAGKTVVFTGALERMTRDEA 638

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +    +LGA VS  +S+KTDI++ G   GSKL+ A +LG++++ E+++L ++
Sbjct: 639 KAQAERLGAKVSGSVSKKTDIVVAGPGAGSKLKTAAELGIQVLTEDEWLEMV 690


>gi|198243638|ref|YP_002216496.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|254781408|sp|B5FQB9|DNLJ_SALDC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|197938154|gb|ACH75487.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326624250|gb|EGE30595.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 671

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 391/711 (54%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++  + +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y  ++  R TL +DIDG+V KV+   
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLV 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQTAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+
Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|161831535|ref|YP_001596473.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 331]
 gi|190359249|sp|A9NC33|DNLJ_COXBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|161763402|gb|ABX79044.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 331]
          Length = 670

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 246/709 (34%), Positives = 387/709 (54%), Gaps = 46/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + +K +  L  EI+ H+  YY  S+P I DS YD L    + +   +P+   +  P+ 
Sbjct: 4   PAKIQKRIERLRHEINDHNYRYYVLSQPTIPDSVYDELFHELEKLEKKYPE---TITPSS 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E       V H IP LSL+ +++ + LR F  RI +    K D    +  EPK
Sbjct: 61  PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRL--KLDKPFEYVCEPK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE G+ + AA RGDG++GE+V+   R I ++P  L  N  PE++E+RGEV 
Sbjct: 119 MDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVL 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + +  F   N E    G K +ANPRNAASG LR+L+P     R L F+ + +G       
Sbjct: 179 MPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDF 238

Query: 252 K-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                ++L+  +  G PV + ++      G + YY  +   R  +P+DIDG+V KV+   
Sbjct: 239 PKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQ 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I++KF  ++  T +  I+ Q+GRTG +TPVARLEPV++ G  ++N
Sbjct: 299 VQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSN 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D +             +D+RVGD V+V+RAG+VIP+VV  I+ +R   A+    
Sbjct: 359 ATLHNFDEL-----------YRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKI 407

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C + V++          A  RC GGL C AQ  E +KHF SR A +IEGLG + 
Sbjct: 408 PSRCPVCHAEVIKPEGE------AVARCVGGLYCRAQLRESIKHFSSRRALDIEGLGDKL 461

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F + +     I+    I+ L++      + I  +   G+ S  NL  +I K +  +L
Sbjct: 462 VELFIQEK----LIKDITGIYQLKK------SAITALPRMGEKSAENLLTAIEKSKKTTL 511

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   AR+LA+++       +              +L  +  +G + A+
Sbjct: 512 PRFLYALGIRGVGDTTARTLARHFHELDLLMKA----------SIETLQEIRDIGPVAAE 561

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I  F+    N   +  L+  +     + +  V SEI  K  V TG L+ + R +A+E +
Sbjct: 562 NIHAFFHQKNNAELINKLI-HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEEKI 620

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G   ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+
Sbjct: 621 ERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 669


>gi|254489942|ref|ZP_05103137.1| DNA ligase, NAD-dependent [Methylophaga thiooxidans DMS010]
 gi|224465027|gb|EEF81281.1| DNA ligase, NAD-dependent [Methylophaga thiooxydans DMS010]
          Length = 673

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 391/715 (54%), Gaps = 46/715 (6%)

Query: 12  LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ++I  + ++  ++L + I++++  YY    P + D+EYD L      +    P+L  +  
Sbjct: 1   MTISTEVQQRAATLRELINHYNYLYYVTDNPEVPDAEYDRLFSELQQLEQTHPELLTA-- 58

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GGE+     ++ H++P LSL+ +++ E L  F  R+  +     D    +  
Sbjct: 59  -DSPTQRVGGEVLDKFAEIEHAMPMLSLDNVFDQEALTAFDKRVRDWLN--TDQPQIYAA 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRG 189
           EPK+DG  I+IRYE+G  V AA RGDG+ GEDV+A +R I ++P  LS +  P I+EVRG
Sbjct: 116 EPKLDGLAISIRYEQGVLVQAATRGDGNYGEDVTANVRTIKSVPLKLSGDNIPAIVEVRG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           E+++ K+ F  LN   +   +K + NPRNAA+G LR+L+     TR L  + +G+G    
Sbjct: 176 EIFMPKDGFERLNQSQLDNNKKVFVNPRNAAAGSLRQLDSKITATRPLEIYCYGIGYIEG 235

Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   E +  +   G  ++  +++         Y  ++   R +L YDIDG+V KVD
Sbjct: 236 AARPASHTEAMSMIANWGCRISPELKKLEGLEACHRYIEQLGERRDSLAYDIDGVVLKVD 295

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             +LQ++LG  +R+PRW I++KF  ++  T + DI+IQ+GRTG LTPVARL+PV +GG  
Sbjct: 296 NTALQERLGFVSRAPRWAIAYKFPAQEEMTTIEDIEIQVGRTGALTPVARLKPVFVGGVT 355

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHNED I+            +D+R+GD+V+V+RAG+VIP+VV +I+++R    + 
Sbjct: 356 VSNATLHNEDEIRR-----------KDVRIGDQVIVRRAGDVIPEVVKVILSKRTDTVRE 404

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P+ CP+C S V R+         A  RC+GGL C AQ+ E +KHF SR A +++GLG
Sbjct: 405 FVMPTQCPVCGSDVEREAGE------AVSRCSGGLFCPAQRKEAIKHFASRKALDVDGLG 458

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
               D   +    A  I+  AD+F L   Q         +   G  S  NL  +I   + 
Sbjct: 459 ----DKLVEQMVDAELIKDAADLFVLTVEQLAG------LERMGQKSADNLVRAIKASKQ 508

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               RF+++LGIR VG   ARSLA ++                   D  +L+ +  VG I
Sbjct: 509 TRFPRFLYALGIREVGEATARSLAMHFADLDALKAA----------DSEALVEIEDVGPI 558

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A  I  F+Q P N+  +  L+          + +  S +  K +V TGTL ++ R +A+
Sbjct: 559 VAHHIETFFQQPHNLEVINRLIDVGVSWPQEEKSHSDSALSGKTIVLTGTLVQMSRSEAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           E +  LGA V+  +S+KTD ++ G + GSKL KA  L + +++E   L  L+Q  
Sbjct: 619 EKLLALGAKVAGSVSKKTDYVVAGADAGSKLTKAASLDISVVDEAMLLEWLKQEK 673


>gi|260774893|ref|ZP_05883794.1| DNA ligase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609148|gb|EEX35306.1| DNA ligase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 669

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 258/712 (36%), Positives = 398/712 (55%), Gaps = 48/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S ++ ++ L+ L + + YH   YY    P + D+EYD L R    +    PDL      
Sbjct: 1   MS-QEIQERLNQLRETLHYHGVKYYVEDNPEVPDAEYDRLMRELLELEAEHPDLV---SI 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+       VTH IP LSL+  ++ E+L  F  R+       + N   F  E
Sbjct: 57  DSPSQRVGGQPLDGFQSVTHEIPMLSLDNAFDDEELESFHKRMSDRIPTAEFNV--FCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  +++ YE G  V AA RGDG +GE+++  +R I +IP  LS    P+ IEVRGE
Sbjct: 115 PKLDGLAVSLLYENGILVQAATRGDGTTGENITENVRTIKSIPLKLSGQGWPQRIEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249
           V++ K  F  LN +    G K + NPRNAA+G LR+L+     TR L+F+ + +G    I
Sbjct: 175 VFMPKEGFDKLNQQAQKKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVEGI 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             ++  YE   +++  G P+    R+      + +YY ++   R  LPY+IDG+V KVD+
Sbjct: 235 ALSESHYERFLQLKGWGLPMCPETRRVANLTEVKAYYQDILERREALPYEIDGVVIKVDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  +
Sbjct: 295 IALQEQLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            ++VGD V+++RAG+VIP++V +I   R  +A+  
Sbjct: 355 SNATLHNADEIERL-----------GVKVGDSVIIRRAGDVIPQIVSVIEERRPGNARDI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP+C S V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG+
Sbjct: 404 VFPERCPVCSSEVERIEGE------AVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGE 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L      S   I  +   G  S  N+ D++N+ +  
Sbjct: 458 KVIEQLVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVDALNQAKLT 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA+Y+ +                 +   LI V  +GDI+
Sbjct: 508 TLPRFLYSLGIREVGEATAANLAQYFKTLDAVKAA----------NHEQLIEVSDIGDIV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  ++ F+   +N   ++ LL +    P I    ++    +  K +V TG+L ++ R+ A
Sbjct: 558 ASHVIAFFAQDKNQQVIQDLLDQGIEWPEIEEQSEDTPQPLAGKTVVLTGSLSQLSRNDA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  + L+
Sbjct: 618 KSALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLVDLI 669


>gi|240142614|ref|YP_002967127.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1]
 gi|240012561|gb|ACS43786.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1]
          Length = 712

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 306/715 (42%), Positives = 445/715 (62%), Gaps = 14/715 (1%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           + +P+  LS E AR E ++L  EI+ HD+ Y+    PI+ D+EYDAL+RR   I  A P 
Sbjct: 8   RAVPVAELSNEDARIEHAALASEIAEHDERYHGQDAPIVTDAEYDALRRRAAEIEAAHPA 67

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           LA   +      K+G + +    K+ H+IP LSLE  +  ED+ +F  RI RF       
Sbjct: 68  LAAESEVA---KKVGAKPSSRFGKIVHAIPMLSLENAFVDEDVAEFAVRIRRFLDLPGGA 124

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + FT EPKIDG  ++IRYE  + V+AA RGDG +GE+V+A    I  IP  L  + P++
Sbjct: 125 PLAFTAEPKIDGLSLSIRYENRRLVHAATRGDGAAGENVTANALTIQDIPDDLPRDAPDV 184

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGEVY+SK+ F A+N    A G+  +ANPRNAA+G LR+L+P    +R L FF +  
Sbjct: 185 VEIRGEVYLSKSAFAAINARQEAAGKPLFANPRNAAAGSLRQLDPKITASRPLKFFAYSW 244

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G+TS   A+ Q+  L +    GF VN   +  +T   ++  Y  + ++R+ L YDIDG+V
Sbjct: 245 GETSAPIAEAQHAALARFDDWGFYVNPLTKLCSTVEEMLEVYRAIGAMRADLEYDIDGVV 304

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD+ +LQ++LG  +R+PRW ++HKF  +QA T L  I+IQ+GRTG LTPVA+L P+ +
Sbjct: 305 YKVDDLALQRRLGFVSRAPRWAVAHKFPAQQAETVLEAIEIQVGRTGSLTPVAKLRPLTV 364

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG +++NATLHNEDYIKGLD+ G+ +R GRD+RVGD V+V+RAG+VIP++VD+  ++R  
Sbjct: 365 GGVVVSNATLHNEDYIKGLDSDGQPIREGRDLRVGDHVIVQRAGDVIPQIVDVDPSKRSE 424

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
              P+ FP  CP+C S  VR+ NPK+G+  +  RCTGGL C AQ +ER+KHF SR A +I
Sbjct: 425 GTAPYEFPKLCPVCGSHAVREANPKSGREDSVRRCTGGLICQAQAVERIKHFASRGAMDI 484

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG ++++ F + +     +R P+DIFTL+RRQ      +    G G  SV NL+ +I+
Sbjct: 485 EGLGDERIEDFHRDD----LLRTPSDIFTLRRRQDAGEIDLTAREGMGPTSVANLFAAID 540

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
            RR + LER I  LGIRHVG   A+ LAK Y S     +      A      + L  +  
Sbjct: 541 ARRKVPLERLIHGLGIRHVGETNAKLLAKAYRSLPAVREAAQVPDALKRM--VDL--ING 596

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +G ++A A+VEF+  P N   V+ LL EV  +         S +  K +VFTG+L ++ R
Sbjct: 597 IGPVVAAAVVEFFLEPHNSEEVDRLLAEVGTTA--PAAAKESPVTGKTIVFTGSLVRMSR 654

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +A+     LGA  +  +S+KTD+++ G   GSKL KA+Q GV++++E  +  L+
Sbjct: 655 DEAEAMAEGLGARTAGTVSKKTDLVVAGPGAGSKLAKAEQFGVRVIDENGWFDLV 709


>gi|315634861|ref|ZP_07890143.1| NAD-dependent DNA ligase LigA [Aggregatibacter segnis ATCC 33393]
 gi|315476413|gb|EFU67163.1| NAD-dependent DNA ligase LigA [Aggregatibacter segnis ATCC 33393]
          Length = 671

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 247/708 (34%), Positives = 392/708 (55%), Gaps = 45/708 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L + + YH+  Y+    P I DSEYD L  +  A+    P+L  +   + P 
Sbjct: 4   SIQQQIDDLRKTLRYHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELITA---DSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G        ++ H +P LSL+  ++ E+   F+ RI           + F  EPK+D
Sbjct: 61  QRVGARPLSEFAQIKHELPMLSLDNAFSDEEFLAFVKRIQDRLVLVP-EPLTFCCEPKLD 119

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           G  ++I Y  G    AA RGDG +GED++  IR I  IP  L + N P  +EVRGEV++ 
Sbjct: 120 GLAVSILYVNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMP 179

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF-AK 252
            + F  LN+  +  G K +ANPRNAA+G LR+L+P   ++    F  + +G    I    
Sbjct: 180 HDGFERLNERALEQGEKTFANPRNAAAGSLRQLDPKITSQRPLVFNAYSIGVAQGIDLPP 239

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +E LQ ++ +G PVN+ +R  +    ++++Y  M   RS+L YDIDG V KV++  LQ
Sbjct: 240 THFERLQWLKSIGVPVNSEIRLCDGVENVLNFYRTMMEKRSSLGYDIDGTVLKVNDIELQ 299

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+L+PV + G  ++NAT
Sbjct: 300 QRLGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTVSNAT 359

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+ L           +I +GD V+++RAG+VIP+++ ++ + R  +A+   FP+
Sbjct: 360 LHNGDEIERL-----------NIAIGDTVIIRRAGDVIPQIIGVVHDRRPANARQIVFPT 408

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S +VR          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++
Sbjct: 409 RCPVCDSLIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGAKLIE 462

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                E     +  PAD+F L        T +  +   G  S  N   S+ K ++ +L R
Sbjct: 463 QLVDRE----LVHTPADLFKL------DLTTLTRLERMGPKSAENALASLEKAKHTTLAR 512

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A +LA ++ + +               D   L +VP VG+++A  I
Sbjct: 513 FIFALGIRDVGEATALNLANHFKTLEALQNA----------DLEQLQQVPDVGEVVANRI 562

Query: 613 VEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             F++   N+  V  L+ +         +    +  + K +V TGTL ++ R+ A+  + 
Sbjct: 563 FVFWREEHNVAVVNDLIAQGVHWETVEVQDVKENPFKGKTVVLTGTLSQMGRNDAKALLQ 622

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           QLGA VS  +S KTD +I G+  GSKL KA +LGV++++EE+FL  + 
Sbjct: 623 QLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFLAWVN 670


>gi|325576592|ref|ZP_08147310.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC
           33392]
 gi|325161155|gb|EGC73270.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC
           33392]
          Length = 675

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 253/710 (35%), Positives = 400/710 (56%), Gaps = 45/710 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +I   ++++ +L  ++  ++  Y+    P I D+EYD L  +  A+  A P+L  +   +
Sbjct: 7   NIMSLQQQIDTLRHDLRRYEYEYHVLDNPTIPDAEYDRLFHQLKALEAAHPELITA---D 63

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G +      ++ H IP LSL+  ++ E+   F+ RI     +     + F  EP
Sbjct: 64  SPTQRVGAKPLSGFAQIRHEIPMLSLDNAFSDEEFYAFVKRIEDRLIRLP-EPLTFCCEP 122

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEV 191
           K+DG  ++I Y  G    AA RGDG +GED++A IR I  IP  L   N P  +EVRGEV
Sbjct: 123 KLDGLAVSILYVNGILTQAATRGDGATGEDITANIRTIRNIPLQLLMDNPPARLEVRGEV 182

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF 250
           ++    F  LN + +  G K +ANPRNAA+G LR+L+P   ++       +G+G    + 
Sbjct: 183 FMPHAGFERLNQQALEKGEKTFANPRNAAAGSLRQLDPKITSKRPLVLNAYGIGIAEGVD 242

Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                Y+ LQ ++ +G PVN  +R  N    ++ +Y ++++ RS L YDIDG V K+++ 
Sbjct: 243 LPNTHYDRLQWLKSIGIPVNPEIRLCNGTDEVLDFYRDIQNKRSALGYDIDGTVLKINDI 302

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  +++PRW I++KF  ++  TRL D++ Q+GRTG +TPVA+LEPV + G  ++
Sbjct: 303 ALQEKLGFISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLEPVFVAGVTVS 362

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L           DI +GD V+++RAG+VIP+++ ++ + R  DA+P  
Sbjct: 363 NATLHNGDEIERL-----------DIAIGDTVVIRRAGDVIPQIIGVLHDRRPADARPIV 411

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP+C S +VR          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G +
Sbjct: 412 FPKTCPVCDSAIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGK 465

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     E     +  PAD+F L        T +  +   G  S  N   S+ K +N +
Sbjct: 466 LIEQLVDRE----LVHTPADLFKL------DLTTLTRLERMGAKSAENALASLEKAKNTT 515

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFIF+LGIR VG   A +LA ++ + +               D  +L +VP VG+++A
Sbjct: 516 LARFIFALGIREVGEATALNLANHFKTLEALQNA----------DLEALQQVPDVGEVVA 565

Query: 610 QAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
             I+ F+  P N+  V  L+ +         ++   +  + K +V TGTL ++ R++A+ 
Sbjct: 566 NRILAFWHEPHNVAVVNDLIAQGVRWETVETKEVAENRFKGKTVVLTGTLTQMGRNEAKA 625

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +  +GA VS  +S KTD +I GD  GSKL KAQ+LGV ++ EE+FL  +
Sbjct: 626 LLQDMGAKVSGSVSAKTDFVIAGDAAGSKLTKAQELGVTVLTEEEFLAQI 675


>gi|308187689|ref|YP_003931820.1| DNA ligase [Pantoea vagans C9-1]
 gi|308058199|gb|ADO10371.1| DNA ligase [Pantoea vagans C9-1]
          Length = 672

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 244/713 (34%), Positives = 390/713 (54%), Gaps = 49/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +  ++ L   + +H+  Y+    P + D+EYD L R    +    PDL     P+ 
Sbjct: 1   MKSVQDHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRQLEEEHPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G        +V H +P LSL+  ++      F  R+    +  DD  I +  E K
Sbjct: 58  PTQRVGAAPLTVFEQVRHEVPMLSLDNAFDEATFMAFNKRVQDRLKSSDD--ITYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GE+++A +R I  IP  L  +  P  +EVRGE++
Sbjct: 116 LDGAAVSLMYENGLLVRAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRGEIF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           +++  F  LN+E      K +ANPRNAA+G LR+L+P     R L FF +G G       
Sbjct: 176 MTQRGFEKLNEEARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  LQ+ +  G PV++ ++  +     +++Y +++  R  L +DIDG+V KVD  +
Sbjct: 236 PHSHMGRLQQFKAWGLPVSDRIKLVHNAEEALAFYRDIEQQRPNLGFDIDGVVIKVDSQA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW I+ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWAIAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GDRV+++RAG+VIP+VV++++ ER  + +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDRVVIRRAGDVIPQVVNVVIAERPEETREVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          +  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PAHCPVCGSEVERVEGE------SVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ D++ K ++ +L
Sbjct: 459 IDQLVEKE----YVDTPADLFRLTA------GKLTGLDRMGPKSAQNIVDALEKAKSTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++   Q               D  +LI VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAANLANHFGELQKVMDA----------DLEALIAVPDVGKVVAA 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F +   N   +  L  ++     +      + + S    K +V TG+L ++ R  A
Sbjct: 559 HVRNFMEEESNREVIRQLTDDIGIHWPQVVVVKAEEIDSPFAGKTVVLTGSLSQMNRDDA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL 
Sbjct: 619 KAQLIALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLLD 671


>gi|167837047|ref|ZP_02463930.1| DNA ligase, NAD-dependent [Burkholderia thailandensis MSMB43]
          Length = 691

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 261/733 (35%), Positives = 395/733 (53%), Gaps = 56/733 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +  + P  +    Q  K  + L  E+   +  YY   +P + D+EYD L      I  
Sbjct: 1   MARSPVEPPAS----QPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQQIEA 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             PDL     P+ P  ++GGE+      V H  P LSL   ++ +D+  F  R+     K
Sbjct: 57  EHPDLV---TPDSPTQRVGGEVAGGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D        + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR + +IP
Sbjct: 114 ATDLAGTVTEPVEYACELKFDGLAISLRYEGGRFVQASTRGDGTTGEDVTENIRTVRSIP 173

Query: 175 RVLSLNIPEII-EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DI 232
             L       + +VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     
Sbjct: 174 LTLKGRHVPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITA 233

Query: 233 TRYLNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
           +R L+FF +G+G             +L     LG PVN          G++ +++ +   
Sbjct: 234 SRPLSFFAYGIGVLDGVEMPGTHSGLLDWYETLGLPVNRERAVVRGAAGLLGFFHSVGER 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DA+ F  P+ CP C SR+ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVSAVLDRRPADAREFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L        + +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S               
Sbjct: 507 EKSAQNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPVMDA-------- 558

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIE 648
                 L+ V  VG I+A++I +F+    N   +E L  +   +        +     + 
Sbjct: 559 --SIDELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAKGKVTWPEGPPAPRAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +
Sbjct: 617 GKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676

Query: 709 MNEEQFLFLLQQY 721
           ++E     LL+ +
Sbjct: 677 LDEAGMHKLLEGH 689


>gi|134296034|ref|YP_001119769.1| DNA ligase [Burkholderia vietnamiensis G4]
 gi|166215568|sp|A4JF81|DNLJ_BURVG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|134139191|gb|ABO54934.1| DNA ligase, NAD-dependent [Burkholderia vietnamiensis G4]
          Length = 691

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 253/713 (35%), Positives = 384/713 (53%), Gaps = 52/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
              + L  ++   +  YY   +P + D+EYD L      +    P+L     P+ P  ++
Sbjct: 15  ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLEADHPELV---TPDSPTQRV 71

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132
           GG +      V H  P LSL   ++ +D+  F  R+     K  D      + + +  E 
Sbjct: 72  GGAVASGFTPVVHDAPMLSLNNGFSDDDIVAFDKRVADALDKPTDLAGSVTDPVEYACEL 131

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191
           K DG  I++RYE+G FV A+ RGDG +GEDV+  +R I +IP  L     P +++VRGEV
Sbjct: 132 KFDGLAISLRYERGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVRGEV 191

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249
            + K DF  LN+   A  ++ +ANPRNAA+G LR+L+P     R L+FF +G+G      
Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFSYGIGVLDGMP 251

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +L     LG PVN          G++ ++ ++   R +LPYDIDG+VYKV+  
Sbjct: 252 MPDTHSALLDWYEALGLPVNRERAVVRGAQGLLEFFRKVGERRESLPYDIDGVVYKVNRR 311

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +T
Sbjct: 312 DEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++  R  DA  F 
Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLERRPVDAAEFV 420

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++
Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +
Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTT 524

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI+ LGIRHVG   A+ LAK++ S                     L+ V  VG I+A
Sbjct: 525 LARFIYGLGIRHVGESTAKDLAKHFGSLDPIMDA----------SIEELLEVNDVGPIVA 574

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++I +F+    N   ++ L      +        K     +  K +V TGTL  + R  A
Sbjct: 575 ESIHQFFAEEHNRTVIDQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPTLTRDAA 634

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+
Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687


>gi|300724062|ref|YP_003713378.1| DNA ligase [Xenorhabdus nematophila ATCC 19061]
 gi|297630595|emb|CBJ91260.1| DNA ligase [Xenorhabdus nematophila ATCC 19061]
          Length = 658

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 241/699 (34%), Positives = 381/699 (54%), Gaps = 49/699 (7%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
            +H+  Y+    P I D+EYD L R   A+    P+   +   + P  +IG     +  +
Sbjct: 2   RHHEYLYHVMDAPEIPDAEYDRLMRELKALEEQHPEWVTA---DSPTQRIGATPLSAFEQ 58

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H IP LSL+ +++ E    F  R+      KD     F  E K+DG  +++ YE G+ 
Sbjct: 59  VRHEIPMLSLDNVFDEESYLAFDKRVRDRL--KDSQDWVFCCELKLDGLAVSLLYENGEL 116

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GE+++A +R I  IP  L     P  +E+RGEV+I +  F  LN+E   
Sbjct: 117 VQAATRGDGTTGENITANVRTIHAIPLRLKGENIPARVEIRGEVFIKQTGFEKLNEEARR 176

Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEIFAKGQYEMLQKMRCLG 265
            G K +ANPRNAA+G LR+L+P     R L F+ +G+G +         Y  L + +  G
Sbjct: 177 TGNKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGIGVQEGGALPASHYARLMQFKEWG 236

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
            PV++ V+       ++ +Y +++  R TL +DIDG+V KVD   LQ++LG  A++PRW 
Sbjct: 237 LPVSDKVKLCLGTQQVIDFYQDIEQQRPTLGFDIDGVVVKVDSLELQERLGFVAKAPRWA 296

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            + KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G  ++NATLHN D I+ L   
Sbjct: 297 TAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVSVAGVTVSNATLHNADEIERL--- 353

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                    +R+GD V+++RAG+VIP+VV +I   R  ++    FP  CP+C S + R  
Sbjct: 354 --------GLRIGDTVIIRRAGDVIPQVVGVIHERRPAESLEVIFPQHCPVCGSDIERVE 405

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                   A  RCTGGL C AQ+ E L+HFVSR A +++G+G++ ++     E     ++
Sbjct: 406 GE------AVARCTGGLFCGAQRKEALRHFVSRRAMDVDGMGEKIIEQLVDKE----YVK 455

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
            PAD+F L         K+  +   G  S  N+ +++ K R  +  RFI+SLGIR VG  
Sbjct: 456 TPADLFRLTA------GKLTGLERMGPKSAQNVINALEKARKTTFARFIYSLGIREVGET 509

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A +L  ++ + +               D  +LI V  VG I+A  +V F+  P N   +
Sbjct: 510 TAANLVSHFGTLEKLQAA----------DTEALIAVQDVGGIVASHVVNFFNEPHNQAVI 559

Query: 626 EALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           + L+  +       E      +      K +V TG+L ++ R +A++ +  LGA V+  +
Sbjct: 560 DDLVNNIGIHWESAESPNLGEIDGPFAGKTVVLTGSLNRLSRDEAKDKLAALGAKVTGSV 619

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S+KTD++I G+  GSKL KA +LG+ +++E++ + LL++
Sbjct: 620 SKKTDLVIAGEAAGSKLAKANELGIPVIDEDEMIRLLRE 658


>gi|254252054|ref|ZP_04945372.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158]
 gi|124894663|gb|EAY68543.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158]
          Length = 691

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 257/713 (36%), Positives = 385/713 (53%), Gaps = 52/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
              + L  ++   +  YY   +P + D+EYD L      +    P+L     P+ P  ++
Sbjct: 15  ARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFLELQQLEADHPELV---TPDSPTQRV 71

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132
           GG +      V H  P LSL   +  +D+  F  R+     K  D      + + +  E 
Sbjct: 72  GGAVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALAKTTDLAGSVTDPVEYACEL 131

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191
           K DG  I++RYE G FV AA RGDG +GEDV+  +R I +IP  L     P +++VRGEV
Sbjct: 132 KFDGLAISLRYENGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGRTVPAVLDVRGEV 191

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249
            + K DF  LN+   A G++ +ANPRNAA+G LR+L+P     R L+FF +G+G      
Sbjct: 192 LMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMP 251

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +L     LG PVN      +   G+++++  +   R  LPYDIDG+VYKV+  
Sbjct: 252 MPDTHSALLDWYEALGLPVNRERAVVHGADGLLAFFRRVGEKRDALPYDIDGVVYKVNRR 311

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +T
Sbjct: 312 DEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F 
Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFV 420

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++
Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLVCPAQRKQALWHFAQRRALDIDGLGEK 474

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   +       +R PAD+F L        + +  +  F + S  NL DS+ K ++ +
Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFSTLAELDRFAEKSAQNLLDSLEKAKHTT 524

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI+ LGIRHVG   A+ LAK++ S                     L+ V  VG I+A
Sbjct: 525 LARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA----------SIDELLEVNDVGPIVA 574

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++I +F+    N   +E L      +        K     +  K +V TGTL  + R  A
Sbjct: 575 ESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTIVLTGTLPNLTRDAA 634

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +   GA V+  +S+KTD +I G   GSKL KA++LG+ +++E+    LL+
Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVIAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687


>gi|262394922|ref|YP_003286776.1| DNA ligase [Vibrio sp. Ex25]
 gi|262338516|gb|ACY52311.1| DNA ligase [Vibrio sp. Ex25]
          Length = 690

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 253/714 (35%), Positives = 392/714 (54%), Gaps = 48/714 (6%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            +S E   + L  L++ + YH   YY    P I D+EYD L R    I    PDL     
Sbjct: 20  TMS-ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITV-- 76

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG+   +  +VTH +P LSL+  ++  +L  F  R       +      +  
Sbjct: 77  -DSPSQRVGGQPLSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQERVGSQSVK--EYCC 133

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189
           EPK+DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L  N  P  +EVRG
Sbjct: 134 EPKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRG 193

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248
           EV++ K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G    
Sbjct: 194 EVFMPKAGFEKLNELARKKGEKIFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQG 253

Query: 249 -IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              A   YE   +++  G P+    ++  +   + +YY ++   R  LPY+IDG+V K+D
Sbjct: 254 AELAASHYERFLQIKSWGLPMCPETKRVESLADVKAYYQDILQRRDALPYEIDGVVIKID 313

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + ++Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  
Sbjct: 314 DIAVQERLGFVARAPRWAIAYKFPAQEEMTTLNEVEFQVGRTGAITPVAKLEPVFVGGVT 373

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN D I+ L            +++GD V+++RAG+VIP+VV +I   R   A+ 
Sbjct: 374 VSNATLHNADEIERLQ-----------VKIGDHVVIRRAGDVIPQVVSVIKERRPETARD 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             FP+ CP+C S V R          A  RCTGGL C AQ+ + LKHFVSR A +++GLG
Sbjct: 423 IIFPTQCPVCGSHVERIEGE------AVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++     E     ++ PAD+F L      S   +  +   G  S  N+ +++ K + 
Sbjct: 477 DKVIEQLVDRE----MVKTPADLFKL------SAGILTVLDRMGPKSAQNIVNALEKSKE 526

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RF++SLGIR VG   A +LA ++ + +                   LI V  +G +
Sbjct: 527 TTLPRFLYSLGIREVGEATAANLAMHFKTLEAIQNANE----------EQLIEVQDIGAV 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +AQ I  F+   +N   V+ LL++    P I   E+     +E K +V TGTL ++ R +
Sbjct: 577 VAQHITTFFSEEQNQAVVKDLLEQGIHWPEINTTEQVGELPLEGKTVVLTGTLSQLGRTE 636

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L+ 
Sbjct: 637 AKEALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELMN 690


>gi|167563194|ref|ZP_02356110.1| DNA ligase, NAD-dependent [Burkholderia oklahomensis EO147]
          Length = 691

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 260/733 (35%), Positives = 397/733 (54%), Gaps = 56/733 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +  + P  +    Q  K  + L  E+   +  YY   +P + D+EYD L      +  
Sbjct: 1   MARSPVEPPAS----QPAKRAAWLRAELERANYAYYVLDQPELPDAEYDRLFVELQQVEA 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             PDL     P  P  ++GGE+      V H  P LSL   ++ ED+  F  R+     K
Sbjct: 57  EHPDLV---TPESPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDEDVVAFDKRVADGLDK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D      + + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR + ++P
Sbjct: 114 ATDLAGTVTDPVEYACELKFDGLAISLRYEDGRFVQASTRGDGTTGEDVTRNIRTVRSVP 173

Query: 175 RVLSLNIPEII-EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DI 232
             L       + +VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     
Sbjct: 174 LKLKGKHVPRVLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITA 233

Query: 233 TRYLNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
           +R L+FF +G+G             +L     LG PVN          G++ +++ +   
Sbjct: 234 SRPLSFFAYGIGVLDGVDMPDTHGGLLDWYETLGLPVNRERAVVRGAAGLLDFFHAVGER 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q++LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DA+ F  P+ CP C S + R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVSAVLDRRPADAREFVMPTACPECGSGIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L        + +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS++K ++ +L RFI++LGIRHVG   A+ LAK++ S               
Sbjct: 507 EKSAQNLIDSLDKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA-------- 558

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIE 648
                +L+ V  VG I+A++I +F+    N   +E L      +        +     + 
Sbjct: 559 --SIEALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPRAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +
Sbjct: 617 GKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676

Query: 709 MNEEQFLFLLQQY 721
           ++EE    LL+ +
Sbjct: 677 LDEEGMHKLLEGH 689


>gi|167570377|ref|ZP_02363251.1| DNA ligase, NAD-dependent [Burkholderia oklahomensis C6786]
          Length = 691

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 261/733 (35%), Positives = 398/733 (54%), Gaps = 56/733 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +  + P  +    Q  K  + L  E+   +  YY   +P + D+EYD L      +  
Sbjct: 1   MARSPVEPPAS----QPAKRAAWLRAELERANYAYYVLDQPELPDAEYDRLFVELQQVEA 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             PDL     P  P  ++GGE+      V H  P LSL   ++ ED+  F  R+     K
Sbjct: 57  EHPDLV---TPESPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDEDVVAFDKRVADGLDK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D      + + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR + ++P
Sbjct: 114 ATDLAGTVTDPVEYACELKFDGLAISLRYEDGRFVQASTRGDGTTGEDVTRNIRTVRSVP 173

Query: 175 RVLSLNIPEII-EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DI 232
             L       + +VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     
Sbjct: 174 LKLKGKHVPRVLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITA 233

Query: 233 TRYLNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
           +R L+FF +G+G             +L     LG PVN          G++ +++ +   
Sbjct: 234 SRPLSFFAYGIGVLDGVDMPDTHGGLLDWYETLGLPVNRERAVVRGAAGLLDFFHAVGER 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q++LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DA+ F  P+ CP C SR+ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVSAVLDRRPADAREFVMPTACPECGSRIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L        + +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS++K ++ +L RFI++LGIRHVG   A+ LAK++ S               
Sbjct: 507 EKSAQNLIDSLDKAKHTTLSRFIYALGIRHVGESTAKDLAKHFGSLDPIMDA-------- 558

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIE 648
                +L+ V  VG I+A++I +F+    N   +E L      +        +     + 
Sbjct: 559 --SIEALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPRAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +
Sbjct: 617 GKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676

Query: 709 MNEEQFLFLLQQY 721
           ++EE    LL+ +
Sbjct: 677 LDEEGMHKLLEGH 689


>gi|113460523|ref|YP_718587.1| NAD-dependent DNA ligase LigA [Haemophilus somnus 129PT]
 gi|122945214|sp|Q0I2H6|DNLJ_HAES1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|112822566|gb|ABI24655.1| DNA ligase (NAD+) [Haemophilus somnus 129PT]
          Length = 673

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 261/707 (36%), Positives = 400/707 (56%), Gaps = 45/707 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L Q + +H+  Y+    P I DSEYD L  +  A+   +P+ A     N P  
Sbjct: 8   IKQQIEELRQLLRHHEYQYHVLDNPQIPDSEYDRLFHQLKALEQQYPEYA---SENSPTQ 64

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G +   +  +V H IP LSL+  ++ ED   F+ RI         +S+ F  EPK+DG
Sbjct: 65  RVGAKPLSNFAQVKHDIPMLSLDNAFSDEDFFAFVKRIQDRL-IHVHHSLTFCCEPKLDG 123

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
             ++I Y  G+ V AA RGDG +GED++A IR I  IP  L + N P  +EVRGEV++S+
Sbjct: 124 LAVSILYINGQLVQAATRGDGTTGEDITANIRTIRNIPLQLLTDNPPARLEVRGEVFMSQ 183

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS-EIFAKG 253
             F  LN   +A G K +ANPRNAA+G LR+L+P     R L    +G+G          
Sbjct: 184 AGFEKLNKTALAKGEKTFANPRNAAAGSLRQLDPKITGQRPLMLNAYGIGIAEGVELPDT 243

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +  LQ ++ +G PVNN ++  +    ++ +Y  +K  RS+L YDIDG V K+++  LQ+
Sbjct: 244 HFARLQWLKSIGIPVNNEIQLCHGIEKVLDFYRTIKQKRSSLGYDIDGTVLKINDIDLQQ 303

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  +++PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV + G  ++NATL
Sbjct: 304 QLGFISKAPRWAIAYKFPAQEELTILNNVEFQVGRTGAITPVAKLEPVFVAGVTVSNATL 363

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I  L           DI +GD V+V+RAG+VIP+++ ++   R  +A+   FPS 
Sbjct: 364 HNGDEIARL-----------DIAIGDTVIVRRAGDVIPQIIGVLHERRPENAKSIIFPSN 412

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S + +          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ 
Sbjct: 413 CPVCDSVISKIEGE------AVARCTGGLICAAQRKEALKHFVSRKAMDIDGIGAKLIEQ 466

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             + E     +  PAD+F L +        +  +   G  S  N   S+ K +  +L RF
Sbjct: 467 LVERE----LVHTPADLFKLDQ------VTLMRLERMGAKSAENALASLAKAKKTTLARF 516

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG   A +LA ++ + + F              +  L +V  VG+++A+ I 
Sbjct: 517 IFALGIREVGETTALNLATHFKTLEAFENAT----------FEQLQKVQDVGEVVAKRIR 566

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            F+  P N+  V+ L+ +         K V  + ++ K +V TGTL K+ R +A+EY+ Q
Sbjct: 567 SFWSEPHNVAVVKDLIAQGIHWDDVEVKEVRDNPLKGKTVVLTGTLTKMGRSEAKEYLLQ 626

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           LG  VS  +S KTD +I G++ GSKL KA +LG+ I++E +FL LL 
Sbjct: 627 LGCKVSGSVSSKTDFVIAGESAGSKLTKATELGINILSENEFLALLA 673


>gi|170703080|ref|ZP_02893902.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10]
 gi|170132009|gb|EDT00515.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10]
          Length = 691

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 256/713 (35%), Positives = 385/713 (53%), Gaps = 52/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
              + L  ++   +  YY   +P + D+EYD L      +    PDL     P+ P  ++
Sbjct: 15  ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPDLV---TPDSPTQRV 71

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132
           GGE+      V H  P LSL   +  ED+  F  R+     K  D      + + +  E 
Sbjct: 72  GGEVAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALGKTTDLAGSVTDPVEYACEL 131

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191
           K DG  I++RYE G FV A+ RGDG +GEDV+  +R I +IP  L     P +++VRGEV
Sbjct: 132 KFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVRGEV 191

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249
            + K DF  LN+   A  ++ +ANPRNAA+G LR+L+P     R L+FF +G+G      
Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMP 251

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +L      G PVN          G++ ++ ++   R +LPYDIDG+VYKV+  
Sbjct: 252 MPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEKRESLPYDIDGVVYKVNRR 311

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +T
Sbjct: 312 DEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F 
Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLDRRPDDAAEFV 420

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++
Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +
Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTT 524

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI+ LGIRHVG   A+ LAK++ S                     L+ V  VG I+A
Sbjct: 525 LARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA----------SIEELLEVNDVGPIVA 574

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++I +F+    N   +E L      +        K     +  K +V TGTL  + R  A
Sbjct: 575 ESIHQFFAEEHNRTVIEQLRAPGKVTWAEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAA 634

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E++   LL+
Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEDELHQLLE 687


>gi|114570616|ref|YP_757296.1| DNA ligase [Maricaulis maris MCS10]
 gi|122315591|sp|Q0AMX9|DNLJ_MARMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|114341078|gb|ABI66358.1| DNA ligase, NAD-dependent [Maricaulis maris MCS10]
          Length = 701

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 282/717 (39%), Positives = 425/717 (59%), Gaps = 25/717 (3%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           L  ++ L+  +AR E + L +EI+ HD  YYQ   P I D+ YDAL+R+ +AI   FP  
Sbjct: 4   LKDVDQLTEAEARAEHARLAREIAGHDKAYYQSDAPKISDAAYDALRRKLEAIEVRFPQF 63

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
                   P  ++G   +    ++ H++P LSL   +N ED+  F+ RI RF    + + 
Sbjct: 64  IDLL---SPTQRVGAVPSGKFGEIRHAVPMLSLGNAFNDEDVADFVGRIRRFLGLAESDV 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEI 184
           +  T EPKIDG   ++RY  GK V+ A RGDG +GEDV+  +  +  IP      + P++
Sbjct: 121 VAVTAEPKIDGLSASLRYVGGKLVHGATRGDGQTGEDVTQNLLTLDDIPDTLPPGDWPDV 180

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGL 243
           +EVRGEVY+S  DF ALN+  I  G+  Y NPRNAA+G LR+++P   ++    FF +  
Sbjct: 181 VEVRGEVYMSHADFAALNERQIEAGKDAYKNPRNAAAGSLRQIDPKMTSQRPLRFFAYAW 240

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G+ SE  +  Q   + +   +GFPVN+ + +  T   +++ Y ++++ R+ L YDIDG+V
Sbjct: 241 GEVSEPLSDTQMGAVARFGEMGFPVNDLMARCETVEALLAVYRDIEARRAGLGYDIDGVV 300

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YK D    Q++LG  AR+PRW I+HKF  +QA+T L  IDIQ+GRTG LTPVARL PV +
Sbjct: 301 YKADRLDWQERLGFVARAPRWAIAHKFPAEQATTILEAIDIQVGRTGALTPVARLTPVTV 360

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG ++TNATLHN+D I+            +DIRVGD V+++RAG+VIP+VV ++  +R  
Sbjct: 361 GGVVVTNATLHNQDEIER-----------KDIRVGDTVVIQRAGDVIPQVVRVVDPDRPG 409

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             + F FP+ CP+C S+ +R+ + KTGKL    RCTGGL C AQ  ERLKHFVSR AF+I
Sbjct: 410 RGEAFDFPTECPVCGSQALREHDAKTGKLDVVRRCTGGLICGAQLKERLKHFVSRKAFDI 469

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI--ENILGFGDVSVTNLYDS 541
           EGLG +Q++ F +       I  PA IFTL+ R +    K   +   GFG+ S+ NL+ S
Sbjct: 470 EGLGIKQIEAFQEE----GLITEPAHIFTLKARNEAGEIKPPLQEREGFGETSIRNLFTS 525

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I  RR I+L RF+ +LGIRHVG   +   A+ Y S+  F     N+          ++ +
Sbjct: 526 IEDRRTITLARFLNALGIRHVGENTSALFARTYGSWAAFHAAAANLSD--EAVRAEMLGI 583

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G+   +A+ +++    N   ++ L+ +++        N  S +  K +VFTG L+++
Sbjct: 584 DGIGNAAVEALEQYFTEAHNRDLLDRLVAQLTIEDAEAIAN-DSPVAGKTVVFTGALERM 642

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R +A+     LGA V+  +S KTD ++ G   GSK +KA +LGV+ + E+++  L+
Sbjct: 643 TRDEAKAKAQALGAKVAGSVSGKTDYLVAGPGAGSKAKKAAELGVETLTEDEWFDLI 699


>gi|269968476|ref|ZP_06182487.1| DNA ligase [Vibrio alginolyticus 40B]
 gi|269826910|gb|EEZ81233.1| DNA ligase [Vibrio alginolyticus 40B]
          Length = 690

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 252/714 (35%), Positives = 390/714 (54%), Gaps = 48/714 (6%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            +S E   + L  L++ + YH   YY    P I D+EYD L R    I    PDL     
Sbjct: 20  TMS-ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITV-- 76

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG+   +  +VTH +P LSL+  ++  +L  F  R       +      +  
Sbjct: 77  -DSPSQRVGGQPLSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQERVGSQSVK--EYCC 133

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189
           EPK+DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L  N  P  +EVRG
Sbjct: 134 EPKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRG 193

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248
           EV++ K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G    
Sbjct: 194 EVFMPKAGFEKLNELARKKGEKIFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQG 253

Query: 249 -IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              A   YE   +++  G P+    ++  +   + +YY ++   R  LPY+IDG+V K+D
Sbjct: 254 AELAASHYERFLQIKSWGLPMCPETKRVESLADVKAYYQDILQRRDALPYEIDGVVIKID 313

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + ++Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  
Sbjct: 314 DIAVQERLGFVARAPRWAIAYKFPAQEEMTTLNEVEFQVGRTGAITPVAKLEPVFVGGVT 373

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN D I+ L            +++GD V+++RAG+VIP+VV +I   R   A+ 
Sbjct: 374 VSNATLHNADEIERLQ-----------VKIGDHVVIRRAGDVIPQVVSVIKERRPETARD 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             FP+ CP+C S V R          A  RC GGL C AQ+ + LKHFVSR A +++GLG
Sbjct: 423 IVFPTQCPVCGSHVERIEGE------AVTRCMGGLVCQAQRKQALKHFVSRKALDVDGLG 476

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++     E     ++ PAD+F L      S   +  +   G  S  N+ +++ K + 
Sbjct: 477 DKVIEQLVDRE----MVKTPADLFKL------SAGILTVLDRMGPKSAQNIVNALEKSKE 526

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RF++SLGIR VG   A +LA ++ +                     LI V  +G +
Sbjct: 527 TTLPRFLYSLGIREVGEATAANLAMHFKTLGAIQNATE----------EQLIEVQDIGAV 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +AQ I  F+   +N   V+ LL++    P I   E+     +E K +V TGTL ++ R +
Sbjct: 577 VAQHITTFFSEEQNQAVVKDLLEQGIHWPEINTTEQVGELPLEGKTVVLTGTLSQLGRTE 636

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L+ 
Sbjct: 637 AKEALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELMN 690


>gi|84516174|ref|ZP_01003534.1| DNA ligase [Loktanella vestfoldensis SKA53]
 gi|84509870|gb|EAQ06327.1| DNA ligase [Loktanella vestfoldensis SKA53]
          Length = 722

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 289/713 (40%), Positives = 421/713 (59%), Gaps = 16/713 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +  L+  +A  EL+ L Q ++  +  Y++   P I D+ YDALK+R  AI   F +L 
Sbjct: 22  IAVADLTRAEAMVELARLAQTLAQANTAYHRNDTPEISDAAYDALKQRNAAIEARFRELK 81

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R+   + P +++G  +     KV H++  LSL   ++ +D+  F  R+ ++     D  +
Sbjct: 82  RA---DSPSDQVGAVVADGFGKVQHAVRMLSLGNAFSDDDVTDFDERLRKYLGLTADQPL 138

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +T EPKIDG  +++RYE G  V AA RGDG  GE+V+A    I  IP+ L+   P ++E
Sbjct: 139 RYTAEPKIDGLSLSLRYEDGVLVQAATRGDGAVGENVTANACTIADIPQRLTGA-PAVLE 197

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           VRGEVY+S +DF ALN      G K +ANPRNAA+G LR+L+      R L FF +  G 
Sbjct: 198 VRGEVYMSHDDFAALNARQADKGAKTFANPRNAAAGSLRQLDAGITAARPLRFFAYAWGA 257

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A  Q   + ++  LGF  N      ++   +++ Y+ +++ R++L YDIDG+VYK
Sbjct: 258 LSAPLAATQSGAIARLAELGFATNPLTATCDSPADLIAIYSGIEAQRASLGYDIDGVVYK 317

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ +LQ++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL PV +GG
Sbjct: 318 VDDLALQQRLGFRSTTPRWAIAHKFPAELAWTVLDAIDIQVGRTGALSPVARLVPVTVGG 377

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYI G    G+ +R GRDIRVGD V V RAG+VIPK+ D+    R   A
Sbjct: 378 VVVSNATLHNEDYIAGRGGDGQPIRQGRDIRVGDWVQVYRAGDVIPKIKDVDSARRPAGA 437

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P+ FP  CP C S  +RD         A  RCTGG+ C AQ +ERLKHFVSR AF+IEG
Sbjct: 438 TPYIFPDTCPECGSPAIRDPG------DAVRRCTGGMICPAQAVERLKHFVSRAAFDIEG 491

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F         I  P DIFTL+ R      +++N  G+G  S  NL+ +I+ +
Sbjct: 492 LGAKQVEQFHAD----GWITTPVDIFTLRARYGQGLQQLKNREGWGAKSADNLFAAIDDK 547

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R I+L R I++LGIRHVG   A  LA +Y S+  FA  +          W +L  +  VG
Sbjct: 548 RAIALNRLIYALGIRHVGESSAALLANHYGSWAGFATAMQAAHIGQGPAWDALTSIDGVG 607

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            ++A +++   QNP    ++ AL+ ++         +  S +    +VFTGTL+K+ R +
Sbjct: 608 AVMATSLITTLQNPSEAASIAALVAQLDVQDAPKIAS-DSPVSGLTVVFTGTLEKMTRAE 666

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+     LGA V+  +S KTDI++ G   GSK  KA+ LG++ M+E+ +L L+
Sbjct: 667 AKARAESLGAKVAGSVSAKTDILVAGPGAGSKAAKAEALGIRTMDEDGWLALI 719


>gi|294504743|ref|YP_003568805.1| DNA ligase [Yersinia pestis Z176003]
 gi|262362805|gb|ACY59526.1| DNA ligase [Yersinia pestis D106004]
 gi|262366729|gb|ACY63286.1| DNA ligase [Yersinia pestis D182038]
 gi|294355202|gb|ADE65543.1| DNA ligase [Yersinia pestis Z176003]
          Length = 656

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 242/697 (34%), Positives = 392/697 (56%), Gaps = 47/697 (6%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
            +H+  Y+    P I D+EYD + ++   +    P+L  +   + P  ++G     +  +
Sbjct: 2   RHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTN---DSPTQRVGAAPLDAFEQ 58

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H +P LSL+ +++ E    F  R++     K    + F  E K+DG  +++ YE G+ 
Sbjct: 59  VKHEVPMLSLDNVFDEESYLAFDKRVHDRL--KTAEPLTFCCELKLDGLAVSLLYENGEL 116

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GE+++A +R I  IP  L  +  P  +EVRGEV++ +  F  LN+E   
Sbjct: 117 VRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVFMPQAGFEQLNEEARR 176

Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLG 265
            G K +ANPRNAA+G LR+L+P     R L FF +G+G        +   + L + +  G
Sbjct: 177 KGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGELPRSHIQCLMQFKAWG 236

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
            PV+  V+       ++++Y +++  R+ L +DIDG+V KVD+ +LQ+QLG  AR+PRW 
Sbjct: 237 LPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLALQEQLGFVARAPRWA 296

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            + KF  ++  T++ +++ Q+GRTG +TPVARLEPV + G +++NATLHN D I+ L   
Sbjct: 297 TAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIERL--- 353

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                    +R+GD V+V+RAG+VIP+VV +++ +R  D +  +FPS CP+C S + R  
Sbjct: 354 --------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITFPSQCPVCGSDIERVE 405

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                   A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + ++   + +     + 
Sbjct: 406 GE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQ----YVE 455

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
            PAD+F L         K+  +   G  S  NL  ++ K +  +  RF+++LGIR VG  
Sbjct: 456 NPADLFQLTA------GKLTGLDRMGPKSAQNLIAALEKAKQTTFARFLYALGIREVGEA 509

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A +LA ++ +  N              D  +L  VP VG+++A+ ++ F     N   +
Sbjct: 510 TAANLAAHFRTLDNLRAA----------DIETLKSVPDVGEVVAKHVMNFLSEEHNQKVI 559

Query: 626 EALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           E L K VS    +    +   S    K +V TG+L  + R +A++ +T LGA VS  +S+
Sbjct: 560 EELEKVVSWPEPQQIVVEESDSPFAGKTVVLTGSLTILSRDEAKDRLTALGAKVSGSVSK 619

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           KT ++I G+  GSKL KAQ+LG+K+++E + + LL +
Sbjct: 620 KTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLLGE 656


>gi|91225892|ref|ZP_01260861.1| DNA ligase [Vibrio alginolyticus 12G01]
 gi|91189542|gb|EAS75818.1| DNA ligase [Vibrio alginolyticus 12G01]
          Length = 670

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 252/713 (35%), Positives = 389/713 (54%), Gaps = 48/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E   + L  L++ + YH   YY    P I D+EYD L R    I    PDL      
Sbjct: 1   MS-ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITV--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+   +  +VTH +P LSL+  ++  +L  F  R              +  E
Sbjct: 57  DSPSQRVGGQPLSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQERVGSLSVK--EYCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L  N  P  +EVRGE
Sbjct: 115 PKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE- 248
           V++ K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G     
Sbjct: 175 VFMPKAGFEKLNELARKKGEKIFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGA 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A   YE   +++  G P+    ++  +   + +YY ++   R  LPY+IDG+V K+D+
Sbjct: 235 ELAASHYERFLQIKSWGLPMCPETKRVESLADVKAYYQDILQRRDALPYEIDGVVIKIDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            ++Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  +
Sbjct: 295 IAVQERLGFVARAPRWAIAYKFPAQEEMTTLNEVEFQVGRTGAITPVAKLEPVFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            +++GD V+++RAG+VIP+VV +I   R   A+  
Sbjct: 355 SNATLHNADEIERLQ-----------VKIGDHVVIRRAGDVIPQVVSVIKERRPETARDI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+C S V R          A  RC GGL C AQ+ + LKHFVSR A +++GLG 
Sbjct: 404 VFPTQCPVCGSHVERIEGE------AVTRCMGGLVCQAQRKQALKHFVSRKALDVDGLGD 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     ++ PAD+F L      S   +  +   G  S  N+ +++ K +  
Sbjct: 458 KVIEQLVDRE----MVKTPADLFKL------SAGILTVLDRMGPKSAQNIVNALEKSKET 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA ++ +                     LI V  +G ++
Sbjct: 508 TLPRFLYSLGIREVGEATAANLAMHFKTLGAIQNATE----------EQLIEVQDIGAVV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           AQ I  F+   +N   V+ LL++    P I   E+     +E K +V TGTL ++ R +A
Sbjct: 558 AQHITTFFSEEQNQAVVKDLLEQGIHWPEINTTEQVGELPLEGKTVVLTGTLSQLGRTEA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L+ 
Sbjct: 618 KEALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELMN 670


>gi|254247879|ref|ZP_04941200.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184]
 gi|124872655|gb|EAY64371.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184]
          Length = 691

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 257/713 (36%), Positives = 386/713 (54%), Gaps = 52/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
              + L  ++   +  YY   +P + D+EYD L R    +    P+L     P+ P  ++
Sbjct: 15  ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELV---TPDSPTQRV 71

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132
           GGE       V H  P LSL   +  ED+  F  R+     K  D      + + +  E 
Sbjct: 72  GGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGSVTDPVEYACEL 131

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191
           K DG  I++RYE+G FV AA RGDG +GEDV+  +R I +IP  L     P +++VRGEV
Sbjct: 132 KFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEV 191

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249
            + K DF  LN+   A  ++ +ANPRNAA+G LR+L+      R L+FF +G+G      
Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGMP 251

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +L     LG PVN      +   G++ ++ ++   R +LPYDIDG+VYKV+  
Sbjct: 252 MPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNRR 311

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q++LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +T
Sbjct: 312 DEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F 
Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFV 420

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++
Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +
Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTT 524

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI+ LGIRHVG   A+ LAK++ S                     L+ V  VG I+A
Sbjct: 525 LARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA----------SIEELLEVNDVGPIVA 574

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++I +F+    N   +E L      +        K     +  K +V TGTL  + R  A
Sbjct: 575 ESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAA 634

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+
Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687


>gi|170718864|ref|YP_001784038.1| NAD-dependent DNA ligase LigA [Haemophilus somnus 2336]
 gi|254781341|sp|B0USD9|DNLJ_HAES2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|168826993|gb|ACA32364.1| DNA ligase, NAD-dependent [Haemophilus somnus 2336]
          Length = 667

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 260/707 (36%), Positives = 400/707 (56%), Gaps = 45/707 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L Q + +H+  Y+    P I DSEYD L  +  A+   +P+ A     N P  
Sbjct: 2   IKQQIEELRQLLRHHEYQYHVLDNPQIPDSEYDRLFHQLKALEQQYPEYA---SENSPTQ 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G +   +  +V H IP LSL+  ++ ED   F+ RI         +S+ F  EPK+DG
Sbjct: 59  RVGAKPLSNFAQVKHDIPMLSLDNAFSDEDFFAFVKRIQDRL-IHVHHSLTFCCEPKLDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195
             ++I Y  G+ V AA RGDG +GED++A IR I  IP  L + N P  +EVRGEV++S+
Sbjct: 118 LAVSILYINGQLVQAATRGDGTTGEDITANIRTIRNIPLQLLTDNPPTRLEVRGEVFMSQ 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS-EIFAKG 253
             F  LN   +A G K +ANPRNAA+G LR+L+P     R L    +G+G          
Sbjct: 178 AGFEKLNKTALAKGEKTFANPRNAAAGSLRQLDPKITGQRPLMLNAYGIGIAEGVELPDT 237

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +  LQ ++ +G PVNN ++  +    ++ +Y  +K  RS+L YDIDG V K+++  LQ+
Sbjct: 238 HFARLQWLKSIGIPVNNEIQLCHGIEKVLDFYRTIKQKRSSLGYDIDGTVLKINDIDLQQ 297

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  +++PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV + G  ++NATL
Sbjct: 298 QLGFISKAPRWAIAYKFPAQEELTILNNVEFQVGRTGAITPVAKLEPVFVAGVTVSNATL 357

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I  L           DI +GD V+V+RAG+VIP+++ ++   R  +A+   FP+ 
Sbjct: 358 HNGDEIARL-----------DIAIGDTVIVRRAGDVIPQIIGVLHERRPENAKSIIFPTN 406

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S + +          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ 
Sbjct: 407 CPVCDSVISKIEGE------AVARCTGGLICAAQRKEALKHFVSRKAMDIDGIGAKLIEQ 460

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             + E     +  PAD+F L +        +  +   G  S  N   S+ K +  +L RF
Sbjct: 461 LVERE----LVHTPADLFKLDQ------VTLMRLERMGAKSAENALASLAKAKKTTLARF 510

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG   A +LA ++ + + F              +  L +V  VG+++A+ I 
Sbjct: 511 IFALGIREVGETTALNLATHFKTLEAFENAT----------FEQLQKVQDVGEVVAKRIR 560

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            F+  P N+  V+ L+ +         K V  + ++ K +V TGTL K+ R +A+EY+ Q
Sbjct: 561 SFWSEPHNVAVVKDLIAQGIHWDNVEVKEVRDNPLKGKTVVLTGTLTKMGRSEAKEYLLQ 620

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           LG  VS  +S KTD +I G++ GSKL KA +LG+ I++E +FL LL 
Sbjct: 621 LGCKVSGSVSSKTDFVIAGESAGSKLTKATELGINILSENEFLALLA 667


>gi|332798609|ref|YP_004460108.1| DNA ligase [Tepidanaerobacter sp. Re1]
 gi|332696344|gb|AEE90801.1| DNA ligase [Tepidanaerobacter sp. Re1]
          Length = 675

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 254/720 (35%), Positives = 389/720 (54%), Gaps = 51/720 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + I QA   +  L + I YH+  YY    P I D+EYD L R   ++   FP L     P
Sbjct: 1   MDIVQAENRIKELRESIDYHNYRYYVLDNPEITDAEYDKLMRELISLESQFPQLI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE   +  KVTH  P +SL   ++ E+LR F  R+         N + + +E
Sbjct: 58  DSPSQRVGGEPLEAFKKVTHREPMISLADAFSEEELRDFNRRVTENVG----NQVEYVVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVR 188
            KIDG  +++ YE G  V AA RGDG  GEDV+  ++ I ++P    +    IP +IEVR
Sbjct: 114 LKIDGLAVSLTYENGLLVTAATRGDGVVGEDVTQNVKTIKSVPLRLNIQKDKIPMVIEVR 173

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+Y+SK  F  LN+E   +G   +ANPRNAA+G +R+L+      R L+ F++ LG   
Sbjct: 174 GEIYLSKEGFKKLNEEREEMGLPTFANPRNAAAGSIRQLDSKITAKRPLSTFMYALGYVE 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            I      E+L+  +  GF VN  ++  N F  ++ Y    K  R +LPY+IDG+V KV+
Sbjct: 234 GIEFNTHLEVLEFYKACGFKVNPHIKSFNNFDDVIDYCMSWKEKRHSLPYEIDGMVIKVN 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               QK LG  A++PRW I++KF  +Q  + + DI + +GRTG+LTP A L PV I G+ 
Sbjct: 294 SLHFQKILGSTAKTPRWAIAYKFPAEQKISVIEDIVVSVGRTGVLTPNAVLTPVQIAGST 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNEDYIK            +DI +GD V+V++AG++IP+VV +I  +R  + + 
Sbjct: 354 VSRATLHNEDYIK-----------EKDIHIGDSVIVQKAGDIIPEVVAVIKEKRTGNEKE 402

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP C S V+R           A+RCTG  +C AQ   R+ HF SRDA +I GLG
Sbjct: 403 FKMPHRCPECGSEVIRLPGE------VAYRCTGV-SCPAQIRRRIIHFASRDAMDIRGLG 455

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
              +            I+  +DI+ L++        +  +   G+ S  NL  +I   + 
Sbjct: 456 PAIVSLLLSEN----LIKDVSDIYFLKKE------ALIPLERMGEKSANNLIKAIENSKK 505

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R +++LGI  +G++ + +LA+ + S                  +  LI++P +GD 
Sbjct: 506 QPLNRLVYALGIPLIGSKASLTLAQEFKSMDRLQNAT----------YEELIKIPEIGDK 555

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++I+ F++  +    +  L +     +   E+     +EN   V TG L+K  R KAQ
Sbjct: 556 MAESIIAFFKQEQTKALITRLKEAGVNMLYAKEEIGPKPLENLTFVLTGALEKYSRSKAQ 615

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL--QQYNTTL 725
           E +  LG  V+  +S+KTD ++VG +PGSK  KA +LGVKI++E+QF  ++   Q  T++
Sbjct: 616 ELIENLGGKVTGSVSKKTDYVVVGKDPGSKYNKALELGVKILDEQQFEEMISNAQAETSI 675


>gi|332970057|gb|EGK09055.1| NAD-dependent DNA ligase LigA [Desmospora sp. 8437]
          Length = 670

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 233/715 (32%), Positives = 379/715 (53%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  ++A + + +L +EI  HD  Y+  ++P+I D EYDA+ R    +    P+L     P
Sbjct: 1   MERKEAEQRIEALRREIHEHDHRYHVLNQPVISDQEYDAMMRELLGLEQEHPELV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE      KV H+ P LSL   +N E+L++F  RI R     + + + +  E
Sbjct: 58  DSPSQRVGGEPLPYFEKVRHTQPMLSLANAFNFEELQEFDRRIRR---LAEVDGVDYVCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  ++IRYE+G  V  A RGDG +GE+++  ++ I ++P  L   +   +EVRGE 
Sbjct: 115 LKIDGLAVSIRYEEGVMVRGATRGDGTTGENITQNLKTIRSLPLRLRDAV--TLEVRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249
           ++ + +F  +N +  + G   +ANPRNAA+G LR+L+P     R L+ F++G+G+     
Sbjct: 173 FLPRKEFERINRQKESRGETLFANPRNAAAGALRQLDPKLTAERALDIFLYGIGEIHGTE 232

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LG  VN           ++ + +  +  R  L YDIDG+V KVD+ 
Sbjct: 233 TPGTHTESLDLLSRLGLKVNPDWVTVKGIDDVMQFIDHWREHREELGYDIDGIVIKVDDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            L+++LG  A+SPRW I++KF  ++  T L  ++I++GRTG +TP A L+PV + G  + 
Sbjct: 293 ELRERLGTTAKSPRWAIAYKFPAEEGVTVLRGVEIKVGRTGAVTPTALLDPVILAGTTVQ 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNED+I+            ++I +GD V+VK+AG++IP+VV ++   R  + +P+ 
Sbjct: 353 RATLHNEDFIR-----------EKEILLGDHVIVKKAGDIIPEVVGVVQERRTGEEKPYQ 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S +VR           A RC      +  + E + HFVSR A NIEGLG++
Sbjct: 402 MPTECPECGSELVRLEGE------VALRCINPQCPAQTR-EGIIHFVSRGAMNIEGLGEK 454

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +   F     A  +R PAD++ L+            +   G  SV NL  +I + +  S
Sbjct: 455 VVTQLFN----ADLVRGPADLYDLKAEDL------LPLERMGKKSVENLLAAIEESKQNS 504

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +E+ IF LGIR VGA+ A  LA+++   +               D   L  V  +G  +A
Sbjct: 505 VEKLIFGLGIRFVGAKGALILAQHFGGLEAIMAA----------DREELEAVDEIGPKMA 554

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRH 664
           ++I  ++  P     +  L       + +        +  S    K +V TGTL+ + R 
Sbjct: 555 ESIETYFDKPEVKETLRRLEAAGVNMMYKGPAPVQRGDSDSPFAGKTVVLTGTLESMSRK 614

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A + +   G  V+  +S+ TD +I G+  GSKL+KA+ LGV +++E+ FL +L+
Sbjct: 615 EAADRIEAQGGKVTGSVSKNTDYVIAGEKAGSKLKKARDLGVDVVDEQAFLAMLE 669


>gi|307266289|ref|ZP_07547829.1| DNA ligase, NAD-dependent [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918667|gb|EFN48901.1| DNA ligase, NAD-dependent [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 662

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 243/709 (34%), Positives = 383/709 (54%), Gaps = 49/709 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++ +  L ++I+YH+  YY   +P I D EYD L R    +   +P+      P+ P 
Sbjct: 2   EPKERIKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEFK---TPDSPS 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GGE        TH +P LSL   ++  +LR F  R+           + + +E KID
Sbjct: 59  QRVGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRVREAVG-----DVEYVVELKID 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + YE G F   + RGDG  GE+V+  ++ I +IP  L L     + VRGEV++ +
Sbjct: 114 GLSVELIYENGIFTVGSTRGDGIVGENVTQNLKTIKSIP--LRLKDDASLVVRGEVFMPR 171

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN+E   +G   +ANPRNAA+G LR+L+P     R L+ F+  L K      K  
Sbjct: 172 TSFEKLNEEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEGRKFKTH 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L+ ++  GF V    ++ +    ++    E++++R  LPYDIDG V KV++   ++ 
Sbjct: 232 IETLEFLKEQGFKVIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNDLEKREI 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG+ A+ PRW I+ K+  ++  T++LDI +Q+GRTG LTP A LEPV I G++++ ATLH
Sbjct: 292 LGQTAKDPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVAISGSVVSRATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NEDYIK            +DIR+GD V+V++AGE+IP+VV+++  ER    + F  P  C
Sbjct: 352 NEDYIK-----------EKDIRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C +  VR          A  RCTG L C AQ L  + HF S+DA +IEGLG   ++  
Sbjct: 401 PECGALAVRLPGE------AIRRCTG-LNCPAQLLRGIIHFASKDAMDIEGLGPAIINQL 453

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    I   AD++ L+            +   GD SV NL ++I + +   L+R +
Sbjct: 454 LSK----GLIHNIADLYYLKYEDLI------QLERMGDKSVKNLLNAIEESKTRDLDRLL 503

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGI  +G++ A+ +A+++ +  N  +            +    ++P +G  +A++IV 
Sbjct: 504 FGLGINLIGSKAAQVIAEHFKTMDNIMKA----------KFEDFTQLPDIGPKMARSIVS 553

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+   +N+  +E L           +  VS+  E K  V TGTL+   R +A   + + G
Sbjct: 554 FFAEKQNVEIIEKLKNAGVNMKKLSKGKVSNIFEGKTFVLTGTLENYTREEATRMIEERG 613

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             V+  +S+KTD I+VG +PGSKL+KAQ+LG+KI++E+QF  +L+  N 
Sbjct: 614 GKVTNSVSKKTDYILVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGENI 662


>gi|171322051|ref|ZP_02910925.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5]
 gi|171092642|gb|EDT37943.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5]
          Length = 691

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 259/731 (35%), Positives = 389/731 (53%), Gaps = 56/731 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M + Q  P  +    Q     + L  ++   +  YY   +P + D+EYD L      +  
Sbjct: 1   MARTQAEPPAS----QPEARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLET 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P+L     P+ P  ++GGE+      V H  P LSL   +  ED+  F  R+     K
Sbjct: 57  DHPELV---TPDSPTQRVGGEVAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALNK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D        + +  E K DG  I++RYE G FV A+ RGDG +GEDV+  +R I +IP
Sbjct: 114 TTDLAGSVTEPVEYACELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIP 173

Query: 175 RVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DI 232
             L     P +++VRGEV + K DF  LN+   A  ++ +ANPRNAA+G LR+L+P    
Sbjct: 174 LKLKGAHVPALLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITA 233

Query: 233 TRYLNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
            R L+FF +G+G             +L      G PVN          G++ ++ ++   
Sbjct: 234 QRPLSFFAYGIGVLDGVPMPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEK 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DA  F  P+ CP+C S++ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVGALLDRRPDDAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L          +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVE----LSLVRTPADLFNL------GFATLAELDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI+ LGIRHVG   A+ LAK++ S               
Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 558

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIE 648
                 L+ V  VG I+A++I +F+    N   +E L      +        K     + 
Sbjct: 559 --SIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +
Sbjct: 617 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676

Query: 709 MNEEQFLFLLQ 719
           ++E+    LL+
Sbjct: 677 LDEDGLHQLLE 687


>gi|330445331|ref|ZP_08308983.1| DNA ligase, NAD-dependent [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489522|dbj|GAA03480.1| DNA ligase, NAD-dependent [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 671

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 252/714 (35%), Positives = 407/714 (57%), Gaps = 48/714 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +SI+  ++EL +L +++ YH   YY    P I D+EYD + ++   I    P+       
Sbjct: 1   MSID-LQQELFTLREQLDYHGHRYYVEDNPEIPDAEYDRMMQQLLKIEAEHPEWVTV--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       +V H I  LSL+  +N +DLR F  R+    +    + + +  E
Sbjct: 57  DSPSQRVGGTALEGFTQVKHEIAMLSLDNAFNDDDLRAFQKRLQDRLRS--GSELNYCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PK+DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L   + P  +EVRGE
Sbjct: 115 PKLDGLAVSLMYENGVLVQAATRGDGATGENITHNVRTIRAIPLKLQGTDWPARLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-E 248
           V++ K  F ALN++ +  G K +ANPRNAA+G LR+L+P    TR L+F+ + +G     
Sbjct: 175 VFMPKKGFEALNEKALKKGEKTFANPRNAAAGSLRQLDPKITATRPLSFYAYAVGVVEGR 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A+ QYE L +++  G P+   +R+ ++   ++ Y+  +   R +L Y+IDG+V KVD 
Sbjct: 235 ELAETQYERLCQLKAWGLPMCPEIRKVDSIEEVIVYHQSIGEKRQSLGYEIDGVVIKVDG 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+QLG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  +
Sbjct: 295 IDTQQQLGFVARAPRWAIAYKFPAQEEMTVLNNVEFQVGRTGAITPVAKLEPVFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D ++ L            + +GD V+++RAG+VIP++  ++ + R   AQ  
Sbjct: 355 SNATLHNADEVERL-----------GVMIGDTVIIRRAGDVIPQIASVVESRRPESAQAI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+CQS++ R          A  RCTGGL C AQ+ E LKHFVSR A +++G G+
Sbjct: 404 VFPTECPVCQSKIERIEGE------AVARCTGGLFCQAQRKEALKHFVSRKALDVDGCGE 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F      + S  ++  +   G  S   L D++   +  
Sbjct: 458 KVIEQLVDRE----MVATPADLF------KFSAGEVTVLERMGPKSAQKLVDALKASKLT 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI+SLGIR VG   A +LA Y+ + +  +Q               LI VP VGD++
Sbjct: 508 TLPRFIYSLGIREVGEATAANLANYFETLEAISQATK----------EQLIEVPDVGDVV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  I  F++   N+  V+ L +     P I + E+ +   +E K +V TG+L ++ R  A
Sbjct: 558 AAHIFNFFREEHNMAVVKDLQEVGIHWPEIEKPEEGIELPLEGKTVVLTGSLSQLTRSDA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  + +LGA V+  +S+KTD+++ G+  GSKL KAQ+L ++I +E++ + L+ +
Sbjct: 618 KAALQKLGAKVTGSVSKKTDLLVAGEAAGSKLAKAQELDIEIWDEQKLVDLMSK 671


>gi|167586849|ref|ZP_02379237.1| DNA ligase, NAD-dependent [Burkholderia ubonensis Bu]
          Length = 691

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 257/715 (35%), Positives = 385/715 (53%), Gaps = 52/715 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
              + L  ++   +  YY   +P + D+EYD L      I    P+L     P+ P  ++
Sbjct: 15  ARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFLELQQIEADHPELV---TPDSPTQRV 71

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132
           GG +      V H  P LSL   +  ED+  F  RI     K  D      + + +  E 
Sbjct: 72  GGAVAGGFTPVVHDAPMLSLNNGFEDEDIVAFDKRIADALDKAVDLAGSVTDPVEYACEL 131

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191
           K DG  I++RYE G FV A+ RGDG +GEDV+  +R I ++P  L     P +++VRGEV
Sbjct: 132 KFDGLAISLRYENGVFVQASTRGDGTTGEDVTQNVRTIRSLPLKLKGRNLPAVLDVRGEV 191

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-I 249
            + K DF  LN+   A G++ +ANPRNAA+G LR+L+P     R L+FF +G+G      
Sbjct: 192 LMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGAP 251

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +L     LG PVN         +G++ ++ ++   R +LPYDIDG+VYKV+  
Sbjct: 252 MPDTHSALLDWYETLGLPVNRERAVVRGANGLLGFFRKIGEQRESLPYDIDGVVYKVNRR 311

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q++LG  +R+PR+ ++HKF  ++A T L+ ID+Q+GRTG +TPVARLEPV +GGA +T
Sbjct: 312 DEQERLGFVSRAPRFALAHKFPAQEALTTLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R   A  F 
Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGAVLDRRPDPAPEFV 420

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C SR+ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++
Sbjct: 421 MPTECPVCGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +
Sbjct: 475 IIDQLVEQN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTT 524

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI+ LGIRHVG   A+ LAK++ S                     L+ V  VG I+A
Sbjct: 525 LARFIYGLGIRHVGESTAKDLAKHFGSLNPIMDAT----------VEELLEVNDVGPIVA 574

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++I +F+    N   +E L      +        K     +  K +V TGTL  + R  A
Sbjct: 575 ESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAA 634

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+ +
Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLEGH 689


>gi|116690045|ref|YP_835668.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424]
 gi|166215562|sp|A0K8E8|DNLJ_BURCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215593|sp|Q1BHI7|DNLJ_BURCA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116648134|gb|ABK08775.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424]
          Length = 691

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 256/713 (35%), Positives = 386/713 (54%), Gaps = 52/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
              + L  ++   +  YY   +P + D+EYD L R    +    P+L     P+ P  ++
Sbjct: 15  ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELV---TPDSPTQRV 71

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132
           GGE       V H  P LSL   +  ED+  F  R+     K  D      + + +  E 
Sbjct: 72  GGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGSVTDPVEYACEL 131

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191
           K DG  I++RYE+G FV AA RGDG +GEDV+  +R I +IP  L     P +++VRGEV
Sbjct: 132 KFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEV 191

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249
            + K DF  LN+   A  ++ +ANPRNAA+G LR+L+      R L+FF +G+G      
Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGMP 251

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +L     LG PVN      +   G++ ++ ++   R +LPYDIDG+VYKV+  
Sbjct: 252 MPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNRR 311

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q++LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +T
Sbjct: 312 DEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F 
Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFV 420

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++
Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +
Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLIDSLEKAKHTT 524

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI+ LGIRHVG   A+ LAK++ S                     L+ V  VG I+A
Sbjct: 525 LARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA----------SIEELLEVNDVGPIVA 574

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           +++ +F+    N   +E L      +        K     +  K +V TGTL  + R  A
Sbjct: 575 ESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAA 634

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+
Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687


>gi|107028796|ref|YP_625891.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054]
 gi|105897960|gb|ABF80918.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054]
          Length = 746

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 256/713 (35%), Positives = 386/713 (54%), Gaps = 52/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
              + L  ++   +  YY   +P + D+EYD L R    +    P+L     P+ P  ++
Sbjct: 70  ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELV---TPDSPTQRV 126

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132
           GGE       V H  P LSL   +  ED+  F  R+     K  D      + + +  E 
Sbjct: 127 GGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGSVTDPVEYACEL 186

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191
           K DG  I++RYE+G FV AA RGDG +GEDV+  +R I +IP  L     P +++VRGEV
Sbjct: 187 KFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEV 246

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249
            + K DF  LN+   A  ++ +ANPRNAA+G LR+L+      R L+FF +G+G      
Sbjct: 247 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGMP 306

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +L     LG PVN      +   G++ ++ ++   R +LPYDIDG+VYKV+  
Sbjct: 307 MPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNRR 366

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q++LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +T
Sbjct: 367 DEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVT 426

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F 
Sbjct: 427 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFV 475

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++
Sbjct: 476 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 529

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +
Sbjct: 530 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLIDSLEKAKHTT 579

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI+ LGIRHVG   A+ LAK++ S                     L+ V  VG I+A
Sbjct: 580 LARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA----------SIEELLEVNDVGPIVA 629

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           +++ +F+    N   +E L      +        K     +  K +V TGTL  + R  A
Sbjct: 630 ESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAA 689

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+
Sbjct: 690 KEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 742


>gi|197336238|ref|YP_002156719.1| DNA ligase, NAD-dependent [Vibrio fischeri MJ11]
 gi|254781450|sp|B5FGU7|DNLJ_VIBFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|197317728|gb|ACH67175.1| DNA ligase, NAD-dependent [Vibrio fischeri MJ11]
          Length = 668

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 257/713 (36%), Positives = 400/713 (56%), Gaps = 50/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +SIEQ    L  L+Q+++YH   YY    P + D+EYD + +   +I    P+L      
Sbjct: 1   MSIEQT---LDELKQQLNYHAYRYYVEDSPELPDAEYDRMMQELLSIESEHPELVTV--- 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE      ++ H IP LSL+  ++ E+L  F  R+      K  +   F  E
Sbjct: 55  DSPSQRVGGEALDGFTQIQHEIPMLSLDNAFSDEELEAFEKRMNDRLISKPVS--LFCCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  +++ Y  GK V A  RGDG +GE+++  +R I  IP  L     P  +EVRGE
Sbjct: 113 PKLDGLAVSLLYVNGKLVQAGTRGDGTTGENITENVRTIRCIPLTLQGEGWPTRLEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE- 248
           V++ K  F ALN+  +  G KP+ANPRNAA+G LR+L+     TR L+F+ + +G     
Sbjct: 173 VFMPKAGFEALNERALKRGEKPFANPRNAAAGSLRQLDSKITATRPLSFYAYSVGVIEGG 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 Y+   +++  G P+    +Q  +   + +YY ++   R  L Y+IDG+V KVD+
Sbjct: 233 ELETSHYQRFVQLKSWGLPMCEETKQCYSLTEVKAYYKDILKRRDALKYEIDGVVIKVDD 292

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  +
Sbjct: 293 IALQEQLGFVARAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 352

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            + +GD V+++RAG+VIP++V ++   R  D++  
Sbjct: 353 SNATLHNADEIARL-----------GVHIGDTVIIRRAGDVIPQIVSVVEARRPTDSKAI 401

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P+ CP+C S + R          A  RC  GL C AQ+ E LKHFVSR A +++GLG 
Sbjct: 402 VYPTHCPVCGSNLERVEGE------AVTRCGAGLVCQAQRKEALKHFVSRKALDVDGLGD 455

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L      S   +  +   G  S  N+ D++NK +  
Sbjct: 456 KVVEQLVDKE----MVETPADLFKL------SAGVLTVLERMGPKSAQNVVDALNKAKAT 505

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA ++ + +                +  LI V  VGDI+
Sbjct: 506 TLPRFLYSLGIREVGEATAANLAAHFYTLEAIQVAT----------FEQLIEVSDVGDIV 555

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A+ ++ F+  P N   ++ L +     P I   +++V   +  K +V TGTL K++R++A
Sbjct: 556 AKHVLNFFAEPHNKTVIDDLQEMGIHWPEIKALDESVPQPLAGKVVVLTGTLHKLKRNEA 615

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  + +LGA V+  +S+KTDI+  G+  GSKL KA++LGV++MNEEQ + LL 
Sbjct: 616 KAALQELGAKVTGSVSKKTDILFAGEAAGSKLAKAEELGVEVMNEEQLIELLN 668


>gi|289577826|ref|YP_003476453.1| DNA ligase, NAD-dependent [Thermoanaerobacter italicus Ab9]
 gi|289527539|gb|ADD01891.1| DNA ligase, NAD-dependent [Thermoanaerobacter italicus Ab9]
          Length = 662

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 238/707 (33%), Positives = 386/707 (54%), Gaps = 49/707 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ ++ L ++I+YH+  YY   +P I D EYD L R    +   +P+L     P+ P  +
Sbjct: 4   KERINELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPELK---TPDSPSQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE        TH +P LSL   ++  +L+ F  R+           + + +E KIDG 
Sbjct: 61  VGGEPLKEFEPFTHIVPMLSLANAFSEGELKDFDRRVREAVG-----DVEYVVELKIDGL 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G F   + RGDG  GE+V+  ++ I +IP  L  N+   + VRGEV++ +  
Sbjct: 116 SVELIYENGIFTVGSTRGDGIIGENVTPNLKTIKSIPLRLKDNVS--LVVRGEVFMPRAS 173

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E   +G   +ANPRNAA+G LR+L+P     R L+ F+  L +      K   E
Sbjct: 174 FERLNTEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQRVEGRKFKTHVE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ ++  GF V    ++ +    ++    E+++++  LPYDIDG V KV++   ++ LG
Sbjct: 234 TLQFLKEQGFKVIPIHKKCSNIDEVIREIEEIRNLKDKLPYDIDGAVVKVNDLEKREILG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           + A+ PRW I+ K+  ++  T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE
Sbjct: 294 QTAKEPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVPISGSVVSRATLHNE 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYIK            +DIR+GD V++++AGE+IP+VV+++  ER    + F  P+ CP+
Sbjct: 354 DYIK-----------EKDIRIGDTVIIQKAGEIIPEVVEVVKEERTGHEREFIMPNKCPV 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  VR          A  RCT    C AQ L  + HF S+DA +IEGLG   ++    
Sbjct: 403 CGALAVRLPGE------AVRRCTSV-NCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLS 455

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +      I   AD++ L+            +   GD SV NL ++I + +   L+R +F 
Sbjct: 456 N----GLIHNIADLYYLKYEDLI------QLERMGDKSVKNLLNAIEESKTRDLDRLLFG 505

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G++ A+ +A+++ +  +  +            +    ++P VG  +A++IV F+
Sbjct: 506 LGINLIGSKAAQVIAEHFKTMDDIMKA----------KFEDFTKLPDVGPKMARSIVSFF 555

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +N+  +E L K         ++ VSS  E K  V TG L+   R +A   + + G  
Sbjct: 556 AEKQNVETIEKLKKAGVNMKKLSKEKVSSIFEGKTFVLTGALENYTREEATRIIEERGGK 615

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           V+  +S+KTD ++VG +PGSKL+KAQ+LG++I++E+QF  +L+  N 
Sbjct: 616 VTNSVSKKTDYVLVGKDPGSKLKKAQELGIEIIDEKQFEEMLKGENI 662


>gi|170733380|ref|YP_001765327.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia MC0-3]
 gi|254781274|sp|B1JUF5|DNLJ_BURCC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169816622|gb|ACA91205.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia MC0-3]
          Length = 691

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 256/713 (35%), Positives = 386/713 (54%), Gaps = 52/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
              + L  ++   +  YY   +P + D+EYD L R    +    P+L     P+ P  ++
Sbjct: 15  ARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLETDHPELV---TPDSPTQRV 71

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132
           GGE       V H  P LSL   +  ED+  F  R+     K  D      + + +  E 
Sbjct: 72  GGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGSVTDPVEYACEL 131

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191
           K DG  I++RYE+G FV AA RGDG +GEDV+  +R I +IP  L     P +++VRGEV
Sbjct: 132 KFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEV 191

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249
            + K DF  LN+   A  ++ +ANPRNAA+G LR+L+      R L+FF +G+G      
Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGMP 251

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +L     LG PVN      +   G++ ++ ++   R +LPYDIDG+VYKV+  
Sbjct: 252 MPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNRR 311

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q++LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +T
Sbjct: 312 DEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F 
Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFV 420

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++
Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +
Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLIDSLEKAKHTT 524

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI+ LGIRHVG   A+ LAK++ S                     L+ V  VG I+A
Sbjct: 525 LARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA----------SIEELLEVNDVGPIVA 574

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           +++ +F+    N   +E L      +        K     +  K +V TGTL  + R  A
Sbjct: 575 ESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAA 634

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+
Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687


>gi|283832193|ref|ZP_06351934.1| DNA ligase, NAD-dependent [Citrobacter youngae ATCC 29220]
 gi|291071830|gb|EFE09939.1| DNA ligase, NAD-dependent [Citrobacter youngae ATCC 29220]
          Length = 671

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 390/711 (54%), Gaps = 48/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D EYD L  +   +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDLLMHKLQWLEALHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K  + + +  E K
Sbjct: 58  PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSTDKLTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-IIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L        +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGENIPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGAL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   +++YY++++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVALCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PQHCPVCNSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+FTL         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVEKE----YVHTPADLFTLTA------GKLTGLDRMGPKSAQNVVNALEKAKETTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ +                     L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLDALEAA----------SIEELQKVPDVGIVVAT 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL +       +  + + + S    K +V TG+L  + R  A+
Sbjct: 559 HVFNFFAEESNREVIGQLLAQGIHWPAPVVINAEEIDSPFAGKTVVLTGSLSLMSRDDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +T+LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 ARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669


>gi|221215451|ref|ZP_03588415.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD1]
 gi|221164635|gb|EED97117.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD1]
          Length = 691

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 256/713 (35%), Positives = 383/713 (53%), Gaps = 52/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
              + L  ++   +  YY   +P + D+EYD L R    +    PDL     P+ P  ++
Sbjct: 15  ARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLESDHPDLV---TPDSPTQRV 71

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132
           GG +      V H  P LSL   +  +D+  F  R+     K  D      + + +  E 
Sbjct: 72  GGAVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKTTDLAGSVTDPVEYACEL 131

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191
           K DG  I++RYE G FV A+ RGDG +GEDV+  +R I +IP  L     P +++VRGEV
Sbjct: 132 KFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGERVPAVLDVRGEV 191

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249
            + K DF  LN+   A  ++ +ANPRNAA+G LR+L+P     R L+FF +G+G      
Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMP 251

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +L     LG PVN          G++ ++ ++   R +LPYDIDG+VYKV+  
Sbjct: 252 MPDTHSALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEKRESLPYDIDGVVYKVNRR 311

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q +LG  +R+PR+ ++HKF  ++A T+L+ I +Q+GRTG +TPVARLEPV +GGA +T
Sbjct: 312 DEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGAITPVARLEPVFVGGATVT 371

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F 
Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFV 420

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++
Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +
Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLKKAKHTT 524

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI++LGIRHVG   A+ LAK++ S                     L+ V  VG I+A
Sbjct: 525 LARFIYALGIRHVGESTAKDLAKHFGSLDPIMNAT----------IDELLEVNDVGPIVA 574

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++I +F+    N   +E L      +        K     +  K +V TGTL  + R  A
Sbjct: 575 ESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDDA 634

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +   GA V+  +S+KTD +I G   GSKL KA+ LG+ +++E+    LL+
Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVIAGAEAGSKLAKAEALGIPVLDEDGLHQLLE 687


>gi|307729327|ref|YP_003906551.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1003]
 gi|307583862|gb|ADN57260.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1003]
          Length = 688

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 261/722 (36%), Positives = 389/722 (53%), Gaps = 49/722 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            P    +     +  + L  E+   +  YY   +P + D+EYD L +  ++I    PDL 
Sbjct: 4   TPASNPATSAPAERAAWLRTELERANYAYYVLDQPDLPDAEYDRLFKELESIEAEHPDLI 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ---KKDD 123
               P+ P  ++GGE       V H  P LSL   +  ED+  F  R+        K+  
Sbjct: 64  V---PDSPTQRVGGEAASGFEPVVHDQPMLSLNNGFADEDIIAFDKRVGDALGNNAKEPP 120

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-P 182
             + +  E K DG  I++RY  G FV AA RGDG +GE+V+  IR + +IP  L     P
Sbjct: 121 VPVDYATELKFDGLAISLRYVDGVFVQAATRGDGTTGENVTENIRTVRSIPLRLKGKRVP 180

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
            I++VRGEV + K DF  LN+   A G K +ANPRNAA+G LR+L+      R L+FF +
Sbjct: 181 HILDVRGEVLMFKRDFERLNERQRAAGHKEFANPRNAAAGSLRQLDSKITAQRPLSFFAY 240

Query: 242 GLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           G+G            E+L   + LG PVN          G+++++  +   R  LPYDID
Sbjct: 241 GIGVLDGMEMPATHSELLDWYKELGLPVNAERAVVKGAEGLLAFFRAVGEKRDKLPYDID 300

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+VYKV+    Q+ LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEP
Sbjct: 301 GVVYKVNRRDEQEALGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEP 360

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ 
Sbjct: 361 VFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALLDR 409

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  DA+ F  P+ CP+C S + R  +       A  RCTGGL C AQ+ + L HF  R A
Sbjct: 410 RPADAREFVMPTHCPVCGSNIERLPDE------AIARCTGGLICPAQRKQALWHFAQRRA 463

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I+GLG++ +D   +       +R PAD+F L          +  +  F D S  NL D
Sbjct: 464 MDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFATLAELDRFADKSAQNLLD 513

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           S+ K ++ +L RFI++LGIRHVG   A+ LAK++ S                    +L+ 
Sbjct: 514 SLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SVEALLE 563

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGT 657
           V  VG ++A++I +F+    N   +E L      +        K     +  K +V TGT
Sbjct: 564 VNDVGPVVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTIVLTGT 623

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L  + R  A+E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    L
Sbjct: 624 LPTLSREDAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKL 683

Query: 718 LQ 719
           L+
Sbjct: 684 LE 685


>gi|78485583|ref|YP_391508.1| DNA ligase, NAD-dependent [Thiomicrospira crunogena XCL-2]
 gi|123741582|sp|Q31G89|DNLJ_THICR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78363869|gb|ABB41834.1| DNA ligase, NAD-dependent [Thiomicrospira crunogena XCL-2]
          Length = 672

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 265/711 (37%), Positives = 403/711 (56%), Gaps = 48/711 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L + ++ H   YY    PII D +YD L ++   I    PD      P  P  +
Sbjct: 4   QKAYQKLVESLNQHSYQYYVLDDPIISDPQYDVLYQKLLRIEDEHPDWIL---PESPSQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           IG E       V H++P  SL+  +  ++L+ F+ RI       D  S+ F+ EPK+DG 
Sbjct: 61  IGDEPLKEFHTVRHAVPMYSLDNAFEDDELKSFLKRIEEKL--PDQKSLAFSAEPKMDGL 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196
            I IRYE G+ V A  RGDG  GEDV+  IR I ++P  L  N  PE++EVRGEV++SK+
Sbjct: 119 AINIRYENGQLVQATTRGDGQVGEDVTHNIRPIYSVPLKLFGNNWPEVVEVRGEVFMSKS 178

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN+    +G K +ANPRNAA+G LR+L+      R+L+FF++G G+ S+ +   QY
Sbjct: 179 AFEQLNEHQQEIGGKIFANPRNAAAGSLRQLDSKVAAKRHLSFFLYGWGELSDDWQLPQY 238

Query: 256 E--MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
              M++++   G P N      +   G+ +YY ++++ RS LPY+IDG+VYK+++  LQ+
Sbjct: 239 YSEMIEQLVEWGLPANPQSEIISGLEGMFAYYEKIQAKRSELPYEIDGIVYKLNDIKLQQ 298

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  AR+PRW I+ KF  ++  T+LLDI++Q+GRTG +TPVARL+PV++GG +++NATL
Sbjct: 299 QLGFTARAPRWAIARKFPAEEVWTKLLDIEVQVGRTGAITPVARLQPVSVGGVIVSNATL 358

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D IK            +D+R+GD V+V+RAG+VIP+VV  I+ +R  + Q F  P  
Sbjct: 359 HNMDEIKR-----------KDVRIGDTVIVRRAGDVIPEVVGPILTQRPENTQLFEMPQH 407

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S VV++L+       A  RCTGGL C AQ+   L HFVSR A +I+GLG + +D 
Sbjct: 408 CPECGSDVVKELDK------AVFRCTGGLVCPAQRKRALHHFVSRKAMDIQGLGDKLIDQ 461

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                     ++ P D + L   +  +      +    + S  N+   I      +L +F
Sbjct: 462 LVDK----GWVKHPDDFYHLTVEKLAT------LERMAEKSAQNVITGIQASLETTLAKF 511

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I+SLGI  VG   A++LA ++       Q           ++  LI +  VG+++A+ IV
Sbjct: 512 IYSLGIPEVGEVTAKNLANHFKDLNAIKQA----------EFEELITLNDVGEVVAEHIV 561

Query: 614 EFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            F++ P N   ++ LL      P+      N  S   NK +V TGTL ++ R +A+  + 
Sbjct: 562 NFFKEPHNESVIQGLLDAGMHWPTPETTLVNEDSPFANKVVVLTGTLSEMSRPEAKVLLE 621

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             GA ++  +S KTD +I G+  GSKL KA+ LGV +++E ++L ++ Q +
Sbjct: 622 AQGAKITGSVSAKTDYVIAGEKAGSKLTKAESLGVAVLSEAEWLAMMPQQD 672


>gi|161524425|ref|YP_001579437.1| DNA ligase, NAD-dependent [Burkholderia multivorans ATCC 17616]
 gi|189350820|ref|YP_001946448.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616]
 gi|254781276|sp|A9AIK9|DNLJ_BURM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160341854|gb|ABX14940.1| DNA ligase, NAD-dependent [Burkholderia multivorans ATCC 17616]
 gi|189334842|dbj|BAG43912.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616]
          Length = 691

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 256/712 (35%), Positives = 384/712 (53%), Gaps = 52/712 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
             + L  ++   +  YY   +P + D+EYD L R    +    PDL     P+ P  ++G
Sbjct: 16  RAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLESDHPDLV---TPDSPTQRVG 72

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPK 133
           G +      V H  P LSL   +  +D+  F  R+     K  D      + + +  E K
Sbjct: 73  GAVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKTTDLAGSVTDPVEYACELK 132

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
            DG  I++RYE G FV A+ RGDG +GEDV+  +R I +IP  L  +  P +++VRGEV 
Sbjct: 133 FDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGDRVPAVLDVRGEVL 192

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIF 250
           + K DF  LN+   A  ++ +ANPRNAA+G LR+L+P     R L+FF +G+G       
Sbjct: 193 MFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMPM 252

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                 +L     LG PVN          G++ ++ ++   R +LPYDIDG+VYKV+   
Sbjct: 253 PDTHSALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEKRESLPYDIDGVVYKVNRRD 312

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  +R+PR+ ++HKF  ++A T+L+ I +Q+GRTG +TPVARLEPV +GGA +TN
Sbjct: 313 EQDRLGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGAITPVARLEPVFVGGATVTN 372

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F  
Sbjct: 373 ATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFVM 421

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ 
Sbjct: 422 PTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKI 475

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +L
Sbjct: 476 IDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTL 525

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI++LGIRHVG   A+ LAK++ S                     L+ V  VG I+A+
Sbjct: 526 ARFIYALGIRHVGESTAKDLAKHFGSLDPIMNAT----------IDELLEVNDVGPIVAE 575

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +I +F+    N   +E L      +        K     +  K +V TGTL  + R  A+
Sbjct: 576 SIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDDAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E +   GA V+  +S+KTD +I G   GSKL KA+ LG+ +++E+    LL+
Sbjct: 636 EMLEAAGAKVAGSVSKKTDYVIAGAEAGSKLAKAEALGIPVLDEDGLHQLLE 687


>gi|325529285|gb|EGD06234.1| NAD-dependent DNA ligase [Burkholderia sp. TJI49]
          Length = 691

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 254/715 (35%), Positives = 384/715 (53%), Gaps = 52/715 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
              + L  ++   +  YY   +P + D+EYD L      +    P+      P+ P  ++
Sbjct: 15  ARAAWLRDQLQQANYAYYVLDQPDLPDAEYDRLFAELQQLEADHPEFV---TPDSPTQRV 71

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132
           GGE+      V H  P LSL   +  +D+  F  R+     K  D      + + +  E 
Sbjct: 72  GGEVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKAVDLAGSVTDPVEYACEL 131

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191
           K DG  I++RYE+G FV A+ RGDG +GEDV+  +R I +IP  L     P +++VRGEV
Sbjct: 132 KFDGLAISLRYERGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGADVPAVLDVRGEV 191

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249
            + K DF  LN+   A  ++ +ANPRNAA+G LR+L+P     R L+FF +G+G      
Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMP 251

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +L     LG PVN      +   G++ ++ ++   R  LPYDIDG+VYKV+  
Sbjct: 252 MPDTHSGLLDWYETLGLPVNRERAVVHGADGLLGFFRKVGEKRDGLPYDIDGVVYKVNRR 311

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +T
Sbjct: 312 DEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F 
Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFV 420

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++
Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +
Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTT 524

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RFI+ LGIRHVG   A+ LAK++ S                     L+ V  VG I+A
Sbjct: 525 RARFIYGLGIRHVGESTAKDLAKHFGSLDPIMNA----------SIDELLEVNDVGPIVA 574

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++I +F+    N   +E L      +        K     +  K +V TGTL  + R  A
Sbjct: 575 ESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAA 634

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++EE    LL+ +
Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEEGLHQLLEGH 689


>gi|317049042|ref|YP_004116690.1| DNA ligase, NAD-dependent [Pantoea sp. At-9b]
 gi|316950659|gb|ADU70134.1| DNA ligase, NAD-dependent [Pantoea sp. At-9b]
          Length = 672

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 251/712 (35%), Positives = 399/712 (56%), Gaps = 49/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++++++L   + +H+  Y+    P + D+EYD L  +   +  A P+L     P+ 
Sbjct: 1   MKSVQEQITALRTTLRHHEYLYHVMDTPEVPDAEYDRLMAQLRELESAHPELV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+  ++      F  R+    +  DD  + +  E K
Sbjct: 58  PTQRVGAAPLAAFEQVRHEVPMLSLDNTFDEAGFLAFNKRVQDRLKSSDD--LTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G  V AA RGDG +GE+++A +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGLLVSAATRGDGTTGENITANVRTIHAIPLRLHGDNIPARVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           ++++ F  LN++    G K +ANPRNAA+G LR+L+P     R L FF +GLG       
Sbjct: 176 MTESGFEKLNEDARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  LQ+ +  G PV++ +R AN    ++++Y E++  R TL +DIDG+V KVD  +
Sbjct: 236 PASHLGRLQQFKAWGLPVSDRIRLANNADDVLAFYREVEEARPTLGFDIDGVVIKVDSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVVVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++ +ER  D +   F
Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPEDTREIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PSHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     ++ PAD+F L         K+  +   G  S  N+ D++ K +  +L
Sbjct: 459 IDQLVEKE----YVKTPADLFRLTA------GKLTGLDRMGPKSAQNVVDALEKAKFTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++   +               D  +LI V  VG ++A 
Sbjct: 509 PRFLYALGIREVGEATAANLANHFGELEKVMDA----------DLDALIAVQDVGQVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F     N   +  L +E+     + E      + S    K +V TG+L ++ R  A
Sbjct: 559 HVRNFMDEESNREVIRELTQEMGVHWPQVEVVNAAEIDSPFAGKTVVLTGSLSQMNRDDA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 619 KARLTALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIAVIDEAEMIRLL 670


>gi|37525354|ref|NP_928698.1| NAD-dependent DNA ligase LigA [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81416713|sp|Q7MBH2|DNLJ_PHOLL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|36784781|emb|CAE13691.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 672

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 238/714 (33%), Positives = 389/714 (54%), Gaps = 49/714 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++  L   + +H+  Y+    P I D+EYD L +    +   +P+L  S   + 
Sbjct: 1   MKSTAQQIEKLRTTLRHHEYLYHVMDAPEIPDAEYDRLMQELQDLEEQYPELITS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  +IG     +  +V H IP LSL+ +++ E    F  R+      K+   +    E K
Sbjct: 58  PTQRIGAAPLAAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRL--KETQDLVVCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE++++ IR I  IP  L     P  IE+RGEV+
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITSNIRTIGAIPLRLFGENIPARIEIRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MPQKGFEKLNEEARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLAFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               YE L + +  G PV++ V+       ++ +Y+++ + RS L +DIDG+V K++   
Sbjct: 236 PASHYERLIQFKKWGLPVSDKVKVCTDSQQVIDFYHDIVNQRSALGFDIDGVVVKINSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  AR+PRW  + KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEILGFVARAPRWATAFKFPAQEQMTIVRDVEFQVGRTGAITPVARLEPVQVSGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+++RAG+VIP+VV ++   R  D+    F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIIRRAGDVIPQVVGVLEERRPQDSNVVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C + + R          A  RCTGGL C AQ+ E L+HFVSR A +++G+G++ 
Sbjct: 405 PEHCPVCGADIERIEGE------AVARCTGGLVCGAQRKEALRHFVSRRAMDVDGMGEKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D     E     ++ PAD+F L         K+  +   G  S  N+ D++ K +  + 
Sbjct: 459 IDQLVDKE----YVKTPADLFRLTA------GKLTGLDRMGPKSAQNVVDALEKAKKTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++                   D  +L  V  VG+++A+
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFGELDKLRSA----------DEEALKEVQDVGEVVAK 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +V F+  P N   ++ L+ ++  +         + + S    K +V TG+L ++ R +A
Sbjct: 559 HVVNFFIEPHNQTVIDDLIDDIGINWEPVVVTRAEKIDSPFSGKTVVLTGSLHQLSRDEA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +  LGA V+  +S+KTD++I G+  GSKL KA +L + +++EE+ + LL +
Sbjct: 619 KAKLVALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELNIPVIDEEEMIRLLGE 672


>gi|172060972|ref|YP_001808624.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MC40-6]
 gi|254781273|sp|B1YSH2|DNLJ_BURA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171993489|gb|ACB64408.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MC40-6]
          Length = 691

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 257/713 (36%), Positives = 383/713 (53%), Gaps = 52/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
              + L  ++   +  YY   +P + D+EYD L      +    PDL     P+ P  ++
Sbjct: 15  ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPDLV---TPDSPTQRV 71

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132
           GGE+      V H  P LSL   +  ED+  F  R+     K  D      + + +  E 
Sbjct: 72  GGEVAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALGKTTDLAGSVTDPVEYACEL 131

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191
           K DG  I++RYE G FV A+ RGDG +GEDV+  +R I +IP  L     P +++VRGEV
Sbjct: 132 KFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVRGEV 191

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249
            + K DF  LN+   A  ++ +ANPRNAA+G LR+L+P     R L+FF +G+G      
Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMP 251

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +L      G PVN          G++ ++ ++   R +LPYDIDG+VYKV+  
Sbjct: 252 MPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEKRESLPYDIDGVVYKVNRR 311

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q +LG  +R+PR+ ++HKF  ++A TRL+ ID+Q+GRTG +TPVARLEPV +GGA +T
Sbjct: 312 DEQDRLGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++  R  DA  F 
Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLERRPDDAAEFV 420

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++
Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +
Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTT 524

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI+ LGIRHVG   A+ LAK++ S                     L+ V  VG I+A
Sbjct: 525 LARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA----------SIEELLEVNDVGPIVA 574

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++I +F+    N   +E L      +        K     +  K +V TGTL  + R  A
Sbjct: 575 ESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAA 634

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E+    LL+
Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEDGLHQLLE 687


>gi|293391716|ref|ZP_06636050.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952250|gb|EFE02369.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 671

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 246/708 (34%), Positives = 392/708 (55%), Gaps = 45/708 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L + + +H+  Y+    P I DSEYD L  +  A+    P+L  +   + P 
Sbjct: 4   SIQQQIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELVTA---DSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G        ++ H IP LSL+  ++ E+   F+ RI           + F  EPK+D
Sbjct: 61  QRVGARPLSEFAQIRHEIPMLSLDNAFSNEEFFAFVKRIQDRLALVP-EPLTFCCEPKLD 119

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           G  ++I Y  G    AA RGDG +GED++  IR I  IP  L + N P  +EVRGEV++ 
Sbjct: 120 GLAVSILYVNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMP 179

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF-FVHGLGKTS-EIFAK 252
              F  LN+  +  G K +ANPRNAA+G LR+L+P   ++       + +G         
Sbjct: 180 HAGFERLNERALQHGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYSIGIAEGVELPP 239

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +E LQ ++ +G PVNN ++  +    ++++Y  + + RS+L YDIDG V K+++ +LQ
Sbjct: 240 THFERLQWLKSVGIPVNNEIQLCDGIENVLNFYRTIMAKRSSLGYDIDGAVLKINDIALQ 299

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  +++PRW I++KF  ++  T L +++ Q+GRTG +TPVA+L+PV + G  ++NAT
Sbjct: 300 QRLGFISKAPRWAIAYKFPAQEELTELNEVEFQVGRTGAITPVAKLKPVFVAGVTVSNAT 359

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+ L           +I +GD V+++RAG+VIP+++ ++ + R  DA+   FP+
Sbjct: 360 LHNGDEIERL-----------NIAIGDTVIIRRAGDVIPQIIGVVHDRRPADARQIVFPT 408

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S +VR          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++
Sbjct: 409 ECPVCGSLIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIE 462

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                E     I  PAD+F L        T +  +   G  S  N   S+ K +N +L R
Sbjct: 463 QLVDRE----LIHTPADLFKL------DLTTLSRLERMGPKSAENALTSLEKAKNTTLAR 512

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A +LA ++ + +               D   L +VP VG+++A  I
Sbjct: 513 FIFALGIRDVGEATALNLANHFKTLEALQNA----------DLEQLQQVPDVGEVVANRI 562

Query: 613 VEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             F+    N+  VE L+ +         ++   +  + K +V TGTL ++ R+ A+  + 
Sbjct: 563 FVFWHEAHNVAVVEDLIAQGVHWETVDVQEVKENPFKGKTVVLTGTLSQMGRNDAKALLQ 622

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           QLGA VS  +S KTD +I G+  GSKL KA +LGV++++EE+FL  + 
Sbjct: 623 QLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFLGWIN 670


>gi|269138493|ref|YP_003295193.1| NAD-dependent DNA ligase [Edwardsiella tarda EIB202]
 gi|267984153|gb|ACY83982.1| NAD-dependent DNA ligase [Edwardsiella tarda EIB202]
 gi|304558517|gb|ADM41181.1| DNA ligase [Edwardsiella tarda FL6-60]
          Length = 675

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 259/716 (36%), Positives = 397/716 (55%), Gaps = 52/716 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++     ++L  L   + +H+  YY   +P + D+EYD L  +   +    P L  +   
Sbjct: 1   MTP-TIEQQLEQLRDALRHHEYQYYVLDEPQVTDAEYDRLMAQLKQLEAEHPALVTA--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG    +  +V H +P LSL+ +++ E  + F  R++     K    + F  E
Sbjct: 57  DSPSQRVGGAPLAAFGQVHHEVPMLSLDNVFDEESYQAFDKRLHERL--KSGEPLTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  +++ YE+G  V AA RGDG +GED++A ++ I  IP  L    IP  IEVRGE
Sbjct: 115 PKLDGLAVSLLYEQGMLVRAATRGDGSTGEDITANVKTIRAIPLRLQGVAIPARIEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V++ ++ F A+N+E    G K +ANPRNAA+G LR+L+P     R L F+ +G G     
Sbjct: 175 VFMPQDGFEAMNEEARRRGAKIFANPRNAAAGSLRQLDPRITAQRPLTFYCYGSGLLEGG 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 Y+ LQ+ +  G PV+  V+       +++YY + +  R  L +DIDG+V KVD+
Sbjct: 235 TLPDSHYQCLQRFKSWGLPVSERVKLCCGSAEVLAYYRQTEQDRPGLGFDIDGVVIKVDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            ++Q++LG  AR+PRW  + KF  ++  TRL  ++ Q+GRTG +TPVARLEPV + G  +
Sbjct: 295 IAIQERLGFVARAPRWATAFKFPAQEQMTRLNGVEFQVGRTGAITPVARLEPVQVAGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L           D+R+GD V+V+RAG+VIP+VV ++   R  DA   
Sbjct: 355 SNATLHNADEIERL-----------DLRIGDTVIVRRAGDVIPQVVGVVEAMRPRDALEI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+C S V R          A  RC+GGL C+AQ+ E LKHFVSR A ++EG+G 
Sbjct: 404 GFPTHCPVCGSEVERTEGE------AVARCSGGLICAAQRKESLKHFVSRRAMDVEGMGD 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD++ L      S  K+  +   G  S T L  ++ + R  
Sbjct: 458 KVIEQLVDKE----YVATPADLYRL------SAGKLTGLERMGPKSATKLIAALERSRET 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF+F+LGIR VG   A +LA ++ S Q               D  SL RVP VG+++
Sbjct: 508 TLARFLFALGIREVGEATAANLASHFGSLQALRAA----------DLESLKRVPEVGEVV 557

Query: 609 AQAIVEFYQNPRNICAVEALLK-EVSP-----SIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           A  IV F     N   ++ L+  EV       +  +    + S    K +V TG+L  + 
Sbjct: 558 ASHIVHFLSEAHNRQVIDELISDEVGIRWPEGAPAQSAPAIDSPFAGKTVVLTGSLSVLS 617

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A++ +T LGA VS  +S+KTD++I G+  GSKL KA  LG+++++E Q L +L
Sbjct: 618 RDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKANALGIEVIDEAQMLRML 673


>gi|315180839|gb|ADT87753.1| DNA ligase [Vibrio furnissii NCTC 11218]
          Length = 669

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 249/710 (35%), Positives = 385/710 (54%), Gaps = 47/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   + L+ L+  + YH   YY    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MQNVEQRLTELKDTLHYHAIRYYVEDDPTIPDAEYDRLMRELLDLEARHPELV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG       +VTH IP LSL+  ++ ++L  F  R+             F  EPK
Sbjct: 58  PSQRVGGAPLAGFEQVTHEIPMLSLDNAFDDDELNSFHRRMGDRVLAAKTAK--FCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ Y  G  V AA RGDG +GE+++  +R I +IP  L     P  IEVRGEV+
Sbjct: 116 LDGLAVSLLYVDGVLVQAATRGDGTTGENITENVRTIKSIPLRLQGTGWPTRIEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF- 250
           + K  F  +N E +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEKMNAEALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVIQGGTL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               YE   +++  G P++   ++  +   +  YY ++ + RS LPY+IDG+V KVD+ +
Sbjct: 236 VDSHYERFLQLKGWGLPMSPETKRVASLDEVKVYYQDIMTRRSELPYEIDGVVIKVDDIA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQEQLGFVARAPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GD V+++RAG+VIP++V ++   R   A+   F
Sbjct: 356 ATLHNADEIERL-----------GVKIGDTVVIRRAGDVIPQIVSVVNELRPETAREILF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG + 
Sbjct: 405 PAQCPVCQSDVERIEGE------AVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+        ++  +   G  S  N+ +++N  +  +L
Sbjct: 459 IEQLVDKE----MVSTPADLFRLRA------GELTVLERMGPKSAQNIVNALNTAKATTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF++SLGIR VG   A +LA ++L+     +               LI VP VG I+A 
Sbjct: 509 PRFLYSLGIREVGEATAMNLAHHFLTLDAIREAT----------IEQLIEVPDVGTIVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   RN   VE L+       +I     +    +  K +V TGTL ++ R  A+ 
Sbjct: 559 HVHAFFAQERNQKVVEELIALGIHWQAIAPKTDDEPQPLAGKVVVLTGTLSQLSRSDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +  LGA V+  +S+ TDI+  G+  GSKL KAQ+LG++I +EE  + ++
Sbjct: 619 ALQALGAKVTGSVSKNTDILFAGEAAGSKLAKAQELGIEICDEEDLIAMI 668


>gi|91784125|ref|YP_559331.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400]
 gi|123358676|sp|Q13XB0|DNLJ_BURXL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91688079|gb|ABE31279.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400]
          Length = 688

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 258/722 (35%), Positives = 391/722 (54%), Gaps = 49/722 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            P+   +     +  + L  E+   +  YY   +P + D+EYD L +  ++I    PDL 
Sbjct: 4   TPVSPPATSAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDRLFKELESIETEHPDLI 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS- 125
               P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K      
Sbjct: 64  V---PDSPTQRVGGEAASGFEPVVHEQPMLSLNNGFADEDIVAFDKRVGDALGKNASEPP 120

Query: 126 --IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-P 182
             + +  E K DG  I++RY  G FV A+ RGDG +GE+V+  +R I +IP  L     P
Sbjct: 121 VPVEYAAELKFDGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLRLKGKRVP 180

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
            +++VRGEV + K DF  LN+   A  +K +ANPRNAA+G LR+L+      R L+FF +
Sbjct: 181 HVLDVRGEVLMFKRDFERLNERQRAAEQKEFANPRNAAAGSLRQLDSKITAQRPLSFFSY 240

Query: 242 GLGK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           G+G            E+L   + LG PVN      +   G++ +++ +   R  LPYDID
Sbjct: 241 GIGVLEGMDMPATHSELLDWYKELGLPVNGERAVVHGAEGLLGFFHAVGEKREKLPYDID 300

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+VYKV+    Q+ LG  +R+PR+ ++HKF  ++A TRL+ ID+Q+GRTG +TPVARLEP
Sbjct: 301 GVVYKVNRRDEQEALGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAVTPVARLEP 360

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ 
Sbjct: 361 VFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALLDR 409

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  DA+ F  P+ CP+C S + R  +       A  RCTGGL C AQ+ + L HF  R A
Sbjct: 410 RPDDAREFVMPTHCPVCGSNIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRA 463

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I+GLG++ +D   +       +R PAD+F L          +  +  F + S  NL D
Sbjct: 464 LDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLD 513

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           S+ K ++ +L RFI++LGIRHVG   A+ LAK++ S                    +L+ 
Sbjct: 514 SLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SVEALLE 563

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGT 657
           V  VG ++A++I +F+    N   +E L      +        K     +  K +V TGT
Sbjct: 564 VNDVGPVVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPKAPQGVLAGKTVVLTGT 623

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L  + R +A+E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    L
Sbjct: 624 LPSLAREEAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKL 683

Query: 718 LQ 719
           L+
Sbjct: 684 LE 685


>gi|308050127|ref|YP_003913693.1| DNA ligase, NAD-dependent [Ferrimonas balearica DSM 9799]
 gi|307632317|gb|ADN76619.1| DNA ligase, NAD-dependent [Ferrimonas balearica DSM 9799]
          Length = 685

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 250/726 (34%), Positives = 386/726 (53%), Gaps = 54/726 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           L P   +S  QA+  +  L Q ++ ++  YY    P + D+EYD L R   A+    P L
Sbjct: 4   LPPKNDMS--QAKDRIEQLSQLLNDYNHQYYVLDNPSVPDAEYDRLMRELQALEAEHPAL 61

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
                P+ P  ++GG        V H  P LSL+   N E+   F  R+           
Sbjct: 62  ---RQPDSPTQRVGGAPAGQFQSVAHLKPMLSLDNAMNEEEFSAFHQRLADRLG---SGD 115

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184
           I +  EPK+DG  +++ Y  G    AA RGDG +GE+++  +R I ++P  LS    P +
Sbjct: 116 IQYCAEPKLDGIAVSLIYRDGLLERAATRGDGTTGEEITTNVRTIKSVPLRLSGKGYPAL 175

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGL 243
           +EVRGE ++ K  F A+N + +A G K + NPRNAA+G LR+L+      R L F+ + +
Sbjct: 176 LEVRGEAFMPKAGFEAMNAKAMAAGEKTFVNPRNAAAGSLRQLDSRITANRPLAFYAYAV 235

Query: 244 GK---TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           G         A      L ++   G PV+  V  A      + Y+  +   R  LPY+ID
Sbjct: 236 GVVEGIDTAMADSHSGQLAQLAQWGLPVSPIVETAAGEAAALDYFRRIGQQRPDLPYEID 295

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KVD  + Q+QLG  AR+PRW I+ KF  ++  T L D++ Q+GRTG +TPVARLEP
Sbjct: 296 GVVIKVDSLAQQEQLGFVARAPRWAIACKFPAQEEMTLLKDVEFQVGRTGAVTPVARLEP 355

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GG  ++NATLHN D I  L            +++GD V+++RAG+VIP++V ++   
Sbjct: 356 VFVGGVTVSNATLHNADEIARL-----------GVKIGDTVIIRRAGDVIPQIVSVVAER 404

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  DA+   FPS CP+C S+V R          A  RC+GGL C AQ+ E +KHF SR A
Sbjct: 405 RPDDARDIEFPSACPVCASKVERFEGE------AVARCSGGLFCEAQRKEAIKHFASRKA 458

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +++GLG + ++     E     +  PAD+FTL      S +++  +   G  S  NL  
Sbjct: 459 LDVDGLGDKLVELMVDRE----LVATPADLFTL------SASRLTMLPRMGTKSAQNLVA 508

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           ++++ R  +L RF+++LGIR VG   A +LA+++ + +               D  +LI 
Sbjct: 509 ALDQARTTTLPRFLYALGIREVGEATAANLARHFQTLEALMAA----------DTDALIE 558

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENKKLVFTG 656
           V  VG+++A+ +  F++ P N+  ++AL       V           +  ++ +  V TG
Sbjct: 559 VDDVGEVVAKHVYYFFRQPHNLEVIQALTDTEGANVHWPAIEAVAEEAQPLKGQTWVLTG 618

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL ++ R +A+  +  LGA VS  +S+ TD ++ G+  GSKL KA  LGV +++E+  + 
Sbjct: 619 TLSQMGRSEAKAALEALGAKVSGSVSKNTDTLVAGEKAGSKLTKATDLGVPVLDEDGLVA 678

Query: 717 LLQQYN 722
           LL QYN
Sbjct: 679 LLAQYN 684


>gi|53803401|ref|YP_114852.1| DNA ligase, NAD-dependent [Methylococcus capsulatus str. Bath]
 gi|81681278|sp|Q604U8|DNLJ_METCA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|53757162|gb|AAU91453.1| DNA ligase, NAD-dependent [Methylococcus capsulatus str. Bath]
          Length = 673

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 254/713 (35%), Positives = 387/713 (54%), Gaps = 47/713 (6%)

Query: 12  LS-IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           +S   +  ++   L +EI +H+  YY+   P+I D+EYD L     AI   +P+L     
Sbjct: 1   MSVPAEVVEKARKLREEIEFHNVRYYRLDDPLITDAEYDRLMAELLAIEARYPELV---T 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+ P  ++G     +  +V H +P LSLE  ++ EDL  F  R+ +   +   +++ +  
Sbjct: 58  PDSPTQRVGAPPVEAFTEVRHEVPMLSLENAFSEEDLTAFDRRVRKELSR---DTLEYVA 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRG 189
           EPK+DG  + + Y+ G  V AA RGDG  GEDV+  +RA+  IP  L   + P+  E RG
Sbjct: 115 EPKLDGLAVNLLYQDGVLVRAATRGDGEVGEDVTHNVRAVRAIPLRLKGEDFPDRFEARG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTS 247
           EV++ K  FLALN+     G K + NPRNAA+G LR+L+     +R L+F+ +G+G    
Sbjct: 175 EVFMPKRGFLALNERARRSGEKTFVNPRNAAAGSLRQLDARVTASRPLSFYAYGIGAFPD 234

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 Q+E+L+ ++  G PV+   R      G + YY  +   R  LPYDIDG+VYKVD
Sbjct: 235 ARLPATQHELLESLQRWGLPVSPEYRVVRGAAGCLEYYRSLGERRHDLPYDIDGVVYKVD 294

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   Q  LG  +R+PRW I+HKF  ++A TR++ ID+Q+GRTG+LTPVARLEPV +GG  
Sbjct: 295 DLKAQAGLGFVSRAPRWAIAHKFPAEEARTRVVGIDVQVGRTGVLTPVARLEPVFVGGVT 354

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNATLHN D I+            +D+R GD V+V+RAG+VIP++V ++   R P A+P
Sbjct: 355 VTNATLHNADEIRR-----------KDVRPGDTVIVRRAGDVIPEIVRVVPELRKPGAEP 403

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP C S V  +            RC+GGL C AQ  E +KHF SR A +IEGLG
Sbjct: 404 FRMPEVCPECGSAVEAEPGE------VLARCSGGLYCPAQHKESIKHFASRRAMDIEGLG 457

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +D     +     I   AD++ L   +         +   G+ S  NL  ++ + + 
Sbjct: 458 DKLVDQLVGRK----LIATVADLYRLDLDRLAG------LDRMGEKSAANLLAALERSKR 507

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RF+++LGIR VG   A+ L++++ S +   +               L+ V  VG +
Sbjct: 508 TTLARFLYALGIRDVGEVTAKVLSEHFGSLEALMEATE----------EELLAVADVGPV 557

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +++ I  F+  P N   +  LL                 ++    V TGTL  + R +A+
Sbjct: 558 VSRHIRLFFAQPHNREVISQLLACGVSWEKPAPAPRKLPLQGLVFVLTGTLASMSRDEAR 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +  LGA  +  +SR T  ++ G  PGSKL+KA +LGV +++E+ FL LL++
Sbjct: 618 ARLEALGAKCTGSVSRNTSFVVAGSEPGSKLDKASELGVPVLDEKGFLDLLER 670


>gi|297616809|ref|YP_003701968.1| DNA ligase, NAD-dependent [Syntrophothermus lipocalidus DSM 12680]
 gi|297144646|gb|ADI01403.1| DNA ligase, NAD-dependent [Syntrophothermus lipocalidus DSM 12680]
          Length = 668

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 244/710 (34%), Positives = 377/710 (53%), Gaps = 47/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  R+    L +EI  HD  YY   +P+I D+EYD L R    +  A+PDL     P+ 
Sbjct: 1   METPRERAEKLREEIRKHDYHYYVLDQPLISDAEYDRLFRELVELEQAYPDLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE+      V H +P LSL+  +N  +LR F  R+        D ++ +  E K
Sbjct: 58  PTQRVGGEVLKGFTPVQHRVPLLSLDNAFNERELRDFNRRLKERLG---DEAVAYVCELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I + Y+ G  +  A RGDG  GEDV+A IR I ++P  L+  +P  +EVRGEVY+
Sbjct: 115 IDGVSIALVYQDGVLMSGATRGDGIVGEDVTANIRTIKSLPLRLTYPLP-RVEVRGEVYM 173

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            K  F  LN E    G K +ANPRNAA+G +R+L+P     R L   V+ +         
Sbjct: 174 PKEAFARLNREREDRGEKTFANPRNAAAGSIRQLDPKVTAGRTLGLLVYDILHLEGKEID 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L+ +  LGFPV+   R   +   ++ Y  E +  R  LPY+IDG+V K++    +
Sbjct: 234 SQRETLEFLSELGFPVDRNFRWCASLDEVLEYCEEWQGRRHELPYEIDGVVVKLNSLPAR 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  A+SPRW I++KF  ++  T+++ I++ +GRTG++TP A +EPV++ G  ++ A+
Sbjct: 294 QLLGATAKSPRWAIAYKFPAEEKETKIVAIELNVGRTGVITPTAVMEPVSLAGTTVSRAS 353

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+            +DIRVGD V+V +AG++IP+VV  +  +R      F  P 
Sbjct: 354 LHNYDLIR-----------EKDIRVGDMVVVHKAGDIIPEVVRSLPEKRTGKEIEFKMPD 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C SRVVR           A+RC   + C A+  E L  F SR+A +IEGLG   ++
Sbjct: 403 KCPACGSRVVRFSGE------VAYRCDN-INCPARLKESLIFFASREAMDIEGLGPALVE 455

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      +   AD++ L+  +         +   G  S  NL  ++ + +   L R
Sbjct: 456 QLVDR----GMVSNVADLYYLRAEELAG------LERMGQKSAANLIRALEQSKGRPLHR 505

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            + +LGIR+VG + AR LA++Y   + F          ++ D   L+ +P +G+ IA+++
Sbjct: 506 LLNALGIRYVGLKTARILAEHYRDIERF----------SDIDREELMSIPEIGEKIAESV 555

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             F+  PRN  ++  L K    ++         S+   K  V TG L+ + R++A + + 
Sbjct: 556 TAFFAEPRNWDSIHKLKKAGVNTVEPEFSMAQDSQFAGKTFVLTGALESMTRNEATKAIE 615

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
             G  V+  +SRKTD ++ G +PGSK +KA  LGV +++E QFL LL + 
Sbjct: 616 DRGGKVTNSVSRKTDFVVAGRDPGSKYDKAVALGVTVLDENQFLQLLGRQ 665


>gi|115352108|ref|YP_773947.1| DNA ligase [Burkholderia ambifaria AMMD]
 gi|122322835|sp|Q0BE10|DNLJ_BURCM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|115282096|gb|ABI87613.1| DNA ligase, NAD-dependent [Burkholderia ambifaria AMMD]
          Length = 691

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 256/713 (35%), Positives = 384/713 (53%), Gaps = 52/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
              + L  ++   +  YY   +P + D+EYD L      +    PDL     P+ P  ++
Sbjct: 15  ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPDLV---TPDSPTQRV 71

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132
           GGE+      V H  P LSL   +  ED+  F  R+     K  D      + + +  E 
Sbjct: 72  GGEVAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALGKTTDLAGSVTDPVEYACEL 131

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191
           K DG  I++RYE G FV A+ RGDG +GEDV+  +R I +IP  L     P +++VRGEV
Sbjct: 132 KFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVRGEV 191

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249
            + K DF  LN+   A  ++ +ANPRNAA+G LR+L+P     R L+FF +G+G      
Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMP 251

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +L      G PVN          G++ ++ ++   R +LPYDIDG+VYKV+  
Sbjct: 252 MPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEKRESLPYDIDGVVYKVNRR 311

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q +LG  +R+PR+ ++HKF  ++A TRL+ ID+Q+GRTG +TPVARLEPV +GGA +T
Sbjct: 312 DEQDRLGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F 
Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLDRRPDDAAEFV 420

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++
Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +
Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTT 524

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI+ LGIRHVG   A+ LAK++ S                     L+ V  VG I+A
Sbjct: 525 LARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA----------SIEELLEVNDVGPIVA 574

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++I +F+    N   +E L      +        +     +  K +V TGTL  + R  A
Sbjct: 575 ESIHQFFAEEHNRTVIEQLRAPGKVTWAEGPPAPRAPQGVLAGKTVVLTGTLPNLTRDAA 634

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +++E+    LL+
Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEDGLHQLLE 687


>gi|220931078|ref|YP_002507986.1| DNA ligase, NAD-dependent [Halothermothrix orenii H 168]
 gi|254781343|sp|B8D122|DNLJ_HALOH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219992388|gb|ACL68991.1| DNA ligase, NAD-dependent [Halothermothrix orenii H 168]
          Length = 670

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 256/708 (36%), Positives = 387/708 (54%), Gaps = 49/708 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +  +E+  L ++I YH+  YY    P I D+E+D L +R   +    P L     P+ P
Sbjct: 3   SKVEQEIRDLREKIRYHEYRYYVLDDPEISDAEFDELIQRLIDLEEKHPGLV---TPDSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE      KV H +P LSL   +N  DL  F  RIYR     D   I F +E KI
Sbjct: 60  TQRVGGEPLDKFDKVEHRVPMLSLGNAFNEGDLTNFARRIYRLL---DTGKIDFVVEHKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG    + Y+ G+ +  A RG+G  GEDV+A I+ IP++P  L  ++   IEVRGEVYI 
Sbjct: 117 DGLSAILTYQGGRLIRGATRGNGVVGEDVTANIKTIPSVPLRLKKDV--DIEVRGEVYIK 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K+DF  LN+  +  G +P+ANPRNAA+G +R+L+P     R L+F  + +        + 
Sbjct: 175 KDDFSKLNERRLKKGEEPFANPRNAAAGSIRQLDPRLAAARPLSFIAYDVVAYEGEGLQT 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
               L+ +R LGF   N  R+ +    +V+   +    R  LP++IDG+V KV+E  L++
Sbjct: 235 HVGALELLRELGFK-VNWYRKCDDITEVVNICKDWVDKREELPFEIDGMVIKVNELGLRE 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  A+SPRW I++KF  +Q +T + DI I +GRTG LTP A LEPV + G+ ++ ATL
Sbjct: 294 QLGATAKSPRWAIAYKFPAQQKTTVVKDIIISVGRTGALTPTAVLEPVEVDGSTVSRATL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED I+            +D+R+GD VLV++AG+VIP+VV +I ++R    Q F  P  
Sbjct: 354 HNEDEIRR-----------KDVRIGDHVLVQKAGDVIPEVVKVIKSKRDGSEQIFHMPET 402

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C   VVR+         A  RC     C AQ+ E + HFVSR+A NI+G+G   +D 
Sbjct: 403 CPACGGEVVREEGE------AVLRCVNVTGCPAQRREGILHFVSRNAMNIDGVGPALIDQ 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       I   AD++ L++           +   G+ S TN  ++I   ++  L R 
Sbjct: 457 LLEK----GLIEDYADLYYLKKEDLI------PLERMGEKSATNAIEAIRASKDRPLFRV 506

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIRHVG  +AR L + Y S  +  +               L+ +  +G  IA++I+
Sbjct: 507 IFALGIRHVGLGVARVLTEKYRSLSDLMRASG----------EELVAIDEIGPTIARSII 556

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           EF++ P N   +  L +       +   ++  +  +  K  VFTG L    R +A++ V 
Sbjct: 557 EFFKEPHNREVINKLKEAGVRLEEKENGKEEQNLYLSGKTFVFTGKLDGFTRSEARDKVI 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             G  V++ +SRKTD ++VGD+PGSK +KA++LGV I++E++F  +L+
Sbjct: 617 AAGGKVTSSVSRKTDYVVVGDSPGSKYDKARELGVTILDEDKFKEVLK 664


>gi|225181787|ref|ZP_03735225.1| DNA ligase, NAD-dependent [Dethiobacter alkaliphilus AHT 1]
 gi|225167561|gb|EEG76374.1| DNA ligase, NAD-dependent [Dethiobacter alkaliphilus AHT 1]
          Length = 667

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 253/709 (35%), Positives = 387/709 (54%), Gaps = 45/709 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +QA + +  L QEI  H+  Y+   +P I D+E+D L ++ +A+   FPDL     P
Sbjct: 1   MDRQQALETVEKLRQEIDDHNYRYHVLDEPQISDAEFDDLMQKLEAMEAQFPDLV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+      ++TH +P LSL    NIEDLR F+ R  R   +     + F +E
Sbjct: 58  DSPTQRVGGKPLEGFEQITHRVPMLSLSNALNIEDLRDFVRRAIRLVPEA---ELEFVVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  ++++YE+G+FV  A RGDG  GED++  +R + +IP  L L  P  +EVRGEV
Sbjct: 115 LKVDGLAVSLQYEEGRFVRGATRGDGEVGEDITHNLRTVQSIP--LRLRKPLTLEVRGEV 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ ++ FL LN+E  A G+  +ANPRNAA+G LR+L+P     R L+   +GLG +S++ 
Sbjct: 173 YMPRSSFLKLNEERQAQGQPLFANPRNAAAGSLRQLDPKVAAERNLDMVSYGLGYSSDVT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y+ L  ++ LG  +N  V        +VSY    +  R  LP+DIDGLV K+++ S
Sbjct: 233 PSSHYDALMTLKELGMRINPHVVVLRELEDVVSYCESWREKRYELPFDIDGLVIKINDRS 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  A+SPRW I++KF  +QA TR+  I +Q+GR G LTP+A LEPV + G ++  
Sbjct: 293 LQEELGTTAKSPRWAIAYKFPAEQAVTRVKAITVQVGRIGTLTPLAELEPVTLAGTVVKR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED ++            +D+RVGD V+V++AG++IP+VV+++ ++R    +PF  
Sbjct: 353 ASLHNEDILR-----------EKDVRVGDHVIVQKAGDIIPEVVEVVKSKRTGAEEPFEM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S   R       +            C AQ +ER+ HF SR A +IEG+G   
Sbjct: 402 PKHCPACGSDATRLPGEVALR-------CFNPVCPAQVMERITHFASRSAMDIEGMGPAV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +         A  I   ADI++L  +++     + ++   G+ SV NL  +I K +   L
Sbjct: 455 VLQLLD----AGLIADVADIYSLPDKKE----ALLSLERMGEKSVENLLAAIEKSKKQPL 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R ++ LGIR VG   AR L +++ S +                   L  V  VG  IAQ
Sbjct: 507 WRLLYGLGIRFVGDRTARLLVEHFNSMEKLMAA----------SAEELEAVDEVGPKIAQ 556

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ EF+  P +   +E L            +     ++ K  V TGTL    R +A E +
Sbjct: 557 SVTEFFSLPESGELIERLRAAGLKLKEEEAEAKDLPLQGKTFVLTGTLPTYSRDEAAELI 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G  V+  +S+KTD ++ G+  GSKLEKA++L V I++EE    LL 
Sbjct: 617 EDAGGRVTGSVSKKTDYVVAGEKAGSKLEKAEKLAVTILDEEGLQSLLN 665


>gi|253689765|ref|YP_003018955.1| DNA ligase, NAD-dependent [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756343|gb|ACT14419.1| DNA ligase, NAD-dependent [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 681

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 252/710 (35%), Positives = 394/710 (55%), Gaps = 51/710 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            ++ L + + +H+  Y+    P I D EYD L +   A+    P+L  S   + P  ++G
Sbjct: 14  RVAELRRVLRHHEYKYHVEDAPEIPDVEYDKLMQELKALEADHPELVTS---DSPTQRVG 70

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                +  +V H +P LSL+ +++ E    F  RI      K+ + + F  E K+DG  +
Sbjct: 71  AAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRL--KNGDDLTFCCELKLDGLAV 128

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDF 198
           ++ YE G  V AA RGDG +GE++++ IR +  IP  L     P  +EVRGEV++  + F
Sbjct: 129 SLLYEDGVLVQAATRGDGTTGENITSNIRTVAAIPLRLEGENIPRRVEVRGEVFMKHSGF 188

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFAKGQYE 256
             LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G           +E
Sbjct: 189 EKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPASHWE 248

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L + +  G PV++ ++       ++ +Y  ++  RS+L +DIDG+V KVD   LQ++LG
Sbjct: 249 RLMQFKAWGLPVSDKIKLCTGPAEVLDFYRHVEQTRSSLGFDIDGVVVKVDSLELQERLG 308

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++NATLHN 
Sbjct: 309 FVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSNATLHNA 368

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L            +++GDRV+V+RAG+VIP++V I+ +ER    QP  FPS CP+
Sbjct: 369 DEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIVESERPETVQPIVFPSACPV 417

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V R          A  RCTGGL C AQ+ E LKHFVSR A ++EG+G + +D   +
Sbjct: 418 CGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIDQLVE 471

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     ++ PAD+F L      S   +  +   G  S TNL +++ K ++ +L RF+++
Sbjct: 472 KE----YVKTPADLFRL------SAGIMTGLDRMGPKSATNLVNALEKAKSTTLARFLYA 521

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A +LA ++ S +               D  +L+ VP VG ++A  +  F 
Sbjct: 522 LGIRDVGESTAANLAAHFGSLEALFAA----------DEETLLAVPDVGKVVAAHVRHFL 571

Query: 617 QNPRNICAVEALLKEVSPSI------GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +   N   +  L      +I          + + S    K +V TG+L  + R +A++ +
Sbjct: 572 EEEHNQTVIRELTDPAGINIHWPEVVVVKAEEIDSPFAGKTVVLTGSLTILSRDEAKDRL 631

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL +
Sbjct: 632 TALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRLLGE 681


>gi|229542656|ref|ZP_04431716.1| DNA ligase, NAD-dependent [Bacillus coagulans 36D1]
 gi|229327076|gb|EEN92751.1| DNA ligase, NAD-dependent [Bacillus coagulans 36D1]
          Length = 668

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 247/702 (35%), Positives = 381/702 (54%), Gaps = 53/702 (7%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
            L + ++ +   YY   +P + D+EYD L R    I +A P+L     P+ P  ++GGE 
Sbjct: 12  ELRKLLNQYSYEYYVLDRPSVPDAEYDRLLRELQEIENAHPELI---TPDSPTQRVGGEP 68

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
                KV H  P LSL   +N  DLR F  R+     +       +  E KIDG  I+++
Sbjct: 69  LSGFAKVVHDTPMLSLANAFNEADLRDFDRRVR----ETAGYRYEYVCELKIDGLAISLK 124

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           YE G FV  + RGDG  GED++A +R + +IP  L+  +   IE RGE ++ K  F ALN
Sbjct: 125 YENGLFVQGSTRGDGTIGEDITANLRTVRSIPLRLNEPV--TIEARGECFMPKKSFEALN 182

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
                 G +P+ANPRNAA+G LR+L+P    +R L+ F++ +G T+ +      E L  +
Sbjct: 183 RIKEENGEEPFANPRNAAAGSLRQLDPKIAASRNLDTFMYAIGDTTGLDISAHSEGLAYL 242

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           + LG  VN   R       ++ +  E    R  LPY+IDG+V KV++++ +  LG   +S
Sbjct: 243 KRLGLKVNKETRICRDIGEVLKFIAEWTEKRPALPYEIDGIVIKVNDYAQEAALGTTVKS 302

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I++KF  ++  T+L  I++++GRTG++TP A L PV + G  +  ATLHNED I+ 
Sbjct: 303 PRWAIAYKFPAEEVVTKLTGIEVKVGRTGVVTPTAILNPVRVAGTTVQRATLHNEDLIR- 361

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR+GD V+VK+AG++IP+VV  I   R  + Q FS PS CP C S +
Sbjct: 362 ----------EKDIRIGDYVVVKKAGDIIPEVVRPIPERRTGEEQAFSMPSHCPDCGSEL 411

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           VR  +        A RC     C AQ  E L HFVSR+A NIEGLG++ +   F  E   
Sbjct: 412 VRLEDE------VALRCINP-NCPAQIREGLIHFVSRNAMNIEGLGEKVISQLFAHE--- 461

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             I   ADI+ L++       ++  +   G+ SV+NL  +I   +  SLE+ +F LGIRH
Sbjct: 462 -LIHNVADIYRLKKE------ELLQLERMGEKSVSNLLAAIEASKKNSLEKLLFGLGIRH 514

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VGA+ A+ LA ++ + +  ++               L  +P +G+ +A +I  +++N   
Sbjct: 515 VGAKAAKILAAHFETMERLSKATR----------EELEAIPDIGEKMADSIAAYFENEEA 564

Query: 622 ICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +  V  L       + +      ++N  S    K +V TG L  + R++A+E +  LGA 
Sbjct: 565 LGLVRELAALGVNMVYKGPKRAEKRNADSPFAGKTVVLTGKLVNMTRNEAKEKLEALGAN 624

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           V+  +S+ TD++I G++ G+KL KA+QLG+++ +E  FL  L
Sbjct: 625 VTGSVSKNTDLVIAGEDAGTKLTKAEQLGIEVWDEAAFLERL 666


>gi|50122504|ref|YP_051671.1| NAD-dependent DNA ligase LigA [Pectobacterium atrosepticum
           SCRI1043]
 gi|81644069|sp|Q6D165|DNLJ_ERWCT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|49613030|emb|CAG76481.1| DNA ligase [Pectobacterium atrosepticum SCRI1043]
          Length = 681

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 251/719 (34%), Positives = 397/719 (55%), Gaps = 51/719 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L + + +H+  Y+    P I D EYD L +   A+    P+L  S   + 
Sbjct: 1   MNAVALRVAELRRVLRHHEYKYHVEDAPEIPDIEYDKLMQELKALEADHPELVTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+ +++ E    F  RI      K+ + + F  E K
Sbjct: 58  PTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRL--KNGDDLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE+G  V AA RGDG +GE++++ IR +  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEEGILVQAATRGDGTTGENITSNIRTVGAIPLRLEGENIPRRVEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           +    F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 MKHGGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +E L + +  G PV++ ++       ++ +Y +++  RS+L +DIDG+V KVD  +
Sbjct: 236 PASHWERLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSSLGFDIDGVVVKVDSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GDRV+V+RAG+VIP++V I+ +ER    QP  F
Sbjct: 356 ATLHNADEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIVESERPETVQPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A ++EG+G + 
Sbjct: 405 PAACPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRALDVEGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     ++ PAD+F L      S   +  +   G  S  NL +++ K ++ +L
Sbjct: 459 IDQLVEKE----YVKTPADLFRL------SAGIMTGLDRMGPKSAMNLVNALEKAKSTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ S +               D  +L+ VP VG I+A 
Sbjct: 509 ARFLYALGIRDVGESTAANLAAHFGSLETLFAA----------DEDALLEVPDVGKIVAA 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG------RHEKNVSSEIENKKLVFTGTLQKIQRH 664
            +  F +   N   +  L      +I        + + + S    K +V TG+L  + R 
Sbjct: 559 HVRHFLEEEHNQTVIRELTDPAGINIYWPEVKVVNAEEIDSPFAGKTVVLTGSLSILSRD 618

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL  +  
Sbjct: 619 EAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRLLNNHGD 677


>gi|254508455|ref|ZP_05120575.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus 16]
 gi|219548665|gb|EED25670.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus 16]
          Length = 669

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 255/712 (35%), Positives = 388/712 (54%), Gaps = 48/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S +Q +++L+ L + + YH   YY    P I D+EYD L R    +    P+L      
Sbjct: 1   MS-QQIQEKLNQLRESLHYHGIKYYVEDAPEIPDAEYDRLMRELIELEAQNPNLI---SV 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG        V H IP LSL+  ++ ++L  F  R+          +  F  E
Sbjct: 57  DSPSQRVGGAPLDGFTPVAHEIPMLSLDNAFDDDELNAFHKRMLDRVAGSSVEA--FCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L     P  IEVRGE
Sbjct: 115 PKLDGLAVSLLYENGVLVQAATRGDGATGENITENVRTIKAIPLKLCGEGWPARIEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249
           V++ K  F  LN+  +  G K + NPRNAA+G LR+L+      R L+F+ + +G     
Sbjct: 175 VFMPKAGFEKLNEHALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLSFYAYSVGVVEGA 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             ++  YE   +++  G P+    RQ  +   + +YY ++   R  L Y+IDG+V KVD 
Sbjct: 235 ALSESHYERFLQLKSWGLPMCPETRQVESLDDVKAYYKDILQRRDQLAYEIDGVVIKVDS 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  +
Sbjct: 295 IELQERLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            +++GD V+++RAG+VIP++V ++   R  DA+  
Sbjct: 355 SNATLHNADEIARL-----------GVKIGDSVVIRRAGDVIPQIVSVVAERRPDDAREI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FPS CP+C S+V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG 
Sbjct: 404 VFPSQCPVCNSQVERVEGE------AVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGV 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L      S   I  +   G  S  N+ D++ K +  
Sbjct: 458 KVIEQLVDRE----MVETPADLFKL------SAGIITVLDRMGPKSAQNVVDALAKAKQT 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA ++ +        +            LI VP +GDI+
Sbjct: 508 TLARFLYSLGIREVGEATAANLALHFKTLDAIKAASH----------EQLIAVPDIGDIV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  I  F+    N   ++ L+ +    P I    ++V   +  K +V TG+L ++ R+ A
Sbjct: 558 ASHITAFFAQDNNQSVIDDLIAQGICWPDIEEKGEDVPQPLAGKTVVLTGSLSQLSRNDA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LGV+I  E+  + LL
Sbjct: 618 KAALQNLGAKVTGSVSKKTDILFAGENAGSKLSKAQELGVEIRTEQDLIDLL 669


>gi|148263373|ref|YP_001230079.1| DNA ligase, NAD-dependent [Geobacter uraniireducens Rf4]
 gi|190359259|sp|A5GA98|DNLJ_GEOUR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146396873|gb|ABQ25506.1| DNA ligase, NAD-dependent [Geobacter uraniireducens Rf4]
          Length = 672

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 256/709 (36%), Positives = 377/709 (53%), Gaps = 44/709 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A + +  L +EI+ H+  YY   +P I D+EYD L R    +  A+PDL  +   
Sbjct: 1   MDKQAAERRIQELHKEINRHNYLYYVEDRPEINDAEYDLLLRELQQLEKAYPDLVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G        +VTH +P LSLE  +N E++  F  RI RF      + I +  E
Sbjct: 58  DSPTQRVGAAPLEKFSQVTHRMPMLSLENAFNEEEMHDFDERIKRFLGLAAGDEIEYVCE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGE 190
           PK+DG  + + YE G F   + RGDG+ GEDV+  +R + TIP  L++  P    EVRGE
Sbjct: 118 PKMDGLAVELVYENGDFTVGSTRGDGYVGEDVTQNLRTVKTIPLSLAIATPPRLFEVRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249
           VY+    F  LN E    G  P+ANPRNAA+G LR+L+      R L+ F +  G     
Sbjct: 178 VYLGLAPFQKLNVEREEAGDPPFANPRNAAAGSLRQLDSRITARRPLSIFCYAAGSLEGH 237

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q ++L  +   G PVN  +R+ +   G+++YY+EM   R +LPY+IDG+V KVD F
Sbjct: 238 EFTSQSDLLNTIPGWGLPVNPLIRKVSGIGGVLAYYHEMSEKRESLPYEIDGVVVKVDSF 297

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ++LGE+ RSPRW I+ KF  +QA T + +I  Q+GRTG++TPVA L PV + G +++
Sbjct: 298 DLQRELGEKTRSPRWAIAWKFPPRQAVTVVEEIVPQVGRTGVITPVAHLRPVEVSGVMVS 357

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN + ++            +DIR GD V+V+RAG+VIP VV +I  +R  D QP  
Sbjct: 358 RATLHNWEEMEK-----------KDIRKGDTVVVERAGDVIPAVVKVITEKRKGDEQPLP 406

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S VV+       +         GL+C AQ  E + HF SR A +I+G+G +
Sbjct: 407 IPANCPECGSEVVKIPGEVAVR-------CLGLSCPAQIRETIIHFASRHAMDIDGMGDK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   K       ++  AD++ L++               GD    NL  +I   +   
Sbjct: 460 YIEQLLK----LGLVKNVADLYYLKKDDFMRF------ERMGDKLAENLLGAIETSKQRE 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI++LGIRHVG   A+ LA  + S +N                  L+ +  VG  +A
Sbjct: 510 LSRFIYALGIRHVGEHTAKLLANAFGSMENLEHASE----------EELLSIREVGPQVA 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           Q+I  F+ N  NI  ++ +           EK V      K  VFTG L +  R  A+  
Sbjct: 560 QSIRTFFHNRNNIEVIDRMFNAGV-KPSVEEKRVGGRFTGKTFVFTGALTRFTRDDAKRM 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           V   G   +  +S+KTD ++ G   GSKL+KA+QLGVK++ E++FL +L
Sbjct: 619 VENEGGHAAGSVSKKTDFVVAGAEAGSKLDKARQLGVKVLTEDEFLAML 667


>gi|332982281|ref|YP_004463722.1| DNA ligase, NAD-dependent [Mahella australiensis 50-1 BON]
 gi|332699959|gb|AEE96900.1| DNA ligase, NAD-dependent [Mahella australiensis 50-1 BON]
          Length = 665

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 242/708 (34%), Positives = 375/708 (52%), Gaps = 48/708 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   + ++ L Q I +H+  YY    P I D+EYDAL R  + +   +P++     P+ P
Sbjct: 5   EDVIQRVNELRQIIEHHNYMYYVLDSPEISDAEYDALMRELEQLESKYPEII---TPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+++     V HS+P LSL  +++  ++R F  R+        +  + + LE KI
Sbjct: 62  TQRVGGQVSGQFQPVVHSVPLLSLNDVFSESEIRDFDRRVRAAL----NEDVQYVLEVKI 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  + + Y+ G F+  A RGDG  GEDV+A +R I +IP  L L +P  +EVRGEV++ 
Sbjct: 118 DGLSVALTYQDGLFIRGATRGDGFVGEDVTANLRTIRSIP--LRLKMPINVEVRGEVFMP 175

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F  LN++    G   +ANPRNAA+G +R+L+P     R+L+ FV  L +      + 
Sbjct: 176 KKYFYKLNEQREKDGLPLFANPRNAAAGSVRQLDPAITAQRHLDIFVFNLQRIEGYAFET 235

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E L  ++  GF +   +   +T    +      +  R  LPY+IDGLV KV+    ++
Sbjct: 236 HVESLMFLKEQGFKIMPYLIPCDTIDEAIEQCRLWEGKRYELPYEIDGLVIKVNSLRQRE 295

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  +++PRW +++KF  ++  + +  I +Q+GRTG+LTP A LEPV + G  ++ ATL
Sbjct: 296 ILGNTSKTPRWAVAYKFPAERKESIIKHIVVQVGRTGVLTPTAVLEPVRLAGTTVSRATL 355

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNEDYIK            +DIR+GD VLV++AG++IP+VV +I  +R  D + F  P  
Sbjct: 356 HNEDYIK-----------EKDIRIGDHVLVQKAGDIIPEVVSVIKEKRTGDERIFEMPDK 404

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C +  VR          AA RCTG  +C AQ    L HF SRDA +IEGLG   +  
Sbjct: 405 CPVCGADAVRIDGE------AARRCTGV-SCPAQVERGLIHFASRDAMDIEGLGPAVVRQ 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               +     IR  ADI+ L+            +   G  S  NL ++I   ++  L R 
Sbjct: 458 LLNKK----LIRDEADIYYLKYEDLVK------LERMGPKSAQNLINAIQASKDRGLARL 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGI  VG   A  LA+ +       +           D   L  +P +G  IA+++V
Sbjct: 508 LYALGIPLVGTRAASILAERFGDIYELMKA----------DQAQLTAIPEIGPKIAESVV 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            F++  +    ++ L           ++  ++ +     V TGTL K  R +A E +  L
Sbjct: 558 TFFKQEQTKDLIKRLETAGVRLTADKKQKGNAPLAGLTFVLTGTLSKYTREQATEIIEGL 617

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           G  V+  +S+KTD +I GD PGSKL+KA QLGVK+++E +F +L+ Q 
Sbjct: 618 GGKVTGSVSKKTDYVIAGDGPGSKLDKALQLGVKVIDENEFEWLIGQE 665


>gi|296158912|ref|ZP_06841740.1| DNA ligase, NAD-dependent [Burkholderia sp. Ch1-1]
 gi|295890787|gb|EFG70577.1| DNA ligase, NAD-dependent [Burkholderia sp. Ch1-1]
          Length = 688

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 257/722 (35%), Positives = 393/722 (54%), Gaps = 49/722 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            P+   +     +  + L  E+   +  YY   +P + D+EYD L +  ++I    PDL 
Sbjct: 4   TPVSPPATSAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDRLFKELESIETEHPDLI 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS- 125
               P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K      
Sbjct: 64  V---PDSPTQRVGGEAASGFEPVVHEQPMLSLNNGFADEDIVAFDKRVGDALGKNASEPP 120

Query: 126 --IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-P 182
             + +  E K DG  I++RY  G FV A+ RGDG +GE+V+  +R I +IP  L     P
Sbjct: 121 VPVEYAAELKFDGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLRLKGKRVP 180

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
           ++++VRGEV + K DF  LN+   A  +K +ANPRNAA+G LR+L+      R L+FF +
Sbjct: 181 QVLDVRGEVLMFKRDFERLNERQRAAEQKEFANPRNAAAGSLRQLDSKITAQRPLSFFSY 240

Query: 242 GLGK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           G+G            E+L   + LG PVN      +   G++ +++ +   R  LPYDID
Sbjct: 241 GIGVLEGMDMPATHSELLDWYKELGLPVNGERAVVHGAEGLLGFFHAVGEKREKLPYDID 300

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+VYKV+    Q+ LG  +R+PR+ ++HKF  ++A TRL+ ID+Q+GRTG +TPVARLEP
Sbjct: 301 GVVYKVNRRDEQEALGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEP 360

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ 
Sbjct: 361 VFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALLDR 409

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  DA+ F  P+ CP+C S + R  +       A  RCTGGL C AQ+ + L HF  R A
Sbjct: 410 RPDDAREFVMPTHCPVCGSNIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRA 463

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I+GLG++ +D   +       +R PAD+F L          +  +  F + S  NL D
Sbjct: 464 LDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLD 513

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           S+ K ++ +L RFI++LGIRHVG   A+ LAK++ S     +              +L+ 
Sbjct: 514 SLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMEA----------SVEALLE 563

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGT 657
           V  VG ++A++I +F+    N   +E L      +        +     +  K +V TGT
Sbjct: 564 VNDVGPVVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPRAPQGVLAGKTVVLTGT 623

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L  + R +A+E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    L
Sbjct: 624 LPSLAREEAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKL 683

Query: 718 LQ 719
           L+
Sbjct: 684 LE 685


>gi|312796238|ref|YP_004029160.1| NAD-dependent DNA ligase [Burkholderia rhizoxinica HKI 454]
 gi|312168013|emb|CBW75016.1| NAD-dependent DNA ligase (EC 6.5.1.2) [Burkholderia rhizoxinica HKI
           454]
          Length = 681

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 263/724 (36%), Positives = 399/724 (55%), Gaps = 52/724 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +    P    S ++  +  + L  E+   +  YY   +P I D+EYD L +  + I  
Sbjct: 1   MSRMMFPP----SADRPAERAAWLRTELDRANHAYYVLDRPEIPDAEYDKLFKELEQIEA 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             PDL     P+ P  ++GG +      + H +P LSL   +   D+  F  R+    Q 
Sbjct: 57  DHPDLI---TPDSPTQRVGGAVAEGFAPIVHDVPMLSLNNGFEDSDVDAFDKRVSDVLQ- 112

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+A +R I ++P  L+ N
Sbjct: 113 --HGDVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTANVRTIRSLPLTLNGN 170

Query: 181 -IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNF 238
            +P++I+VRGEV + K DF  LN      G++ +ANPRNAA+G LR+L+      R L+F
Sbjct: 171 AVPKVIDVRGEVLMFKRDFERLNARQREAGQREFANPRNAAAGSLRQLDSRITAKRPLSF 230

Query: 239 FVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           F +G+G             +L     +G PVN          G++ ++  + + R++LPY
Sbjct: 231 FAYGIGVLDGVPMPDTHSALLDWYVNMGLPVNKERAVVRGAAGLLVFFRGVGARRASLPY 290

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A TRLL I++Q+GRTG +TPVAR
Sbjct: 291 DIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAEEALTRLLAIEVQVGRTGAITPVAR 350

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEP+ +GGA +TNATLHNED ++            +DI +GD V+V+RAG+VIP+VV  I
Sbjct: 351 LEPIFVGGATVTNATLHNEDEVRR-----------KDILIGDTVIVRRAGDVIPEVVGAI 399

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
              R  DA+PF+ P+ CP+C S + R  +       A  RCTGGL C+AQ+ + L HF  
Sbjct: 400 KERRPVDARPFTMPTHCPVCGSAIERLPDE------AIARCTGGLVCAAQRKQALWHFAQ 453

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A +I+GLG++ +D   +       IR PAD+F+L          +  +  F D S  N
Sbjct: 454 RRALDIDGLGEKIIDQLVEQS----LIRTPADLFSL------GFATVAQLDRFADKSAQN 503

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L DS+ + R+ +L RFI++LGIRHVG   AR LA+++ S                    +
Sbjct: 504 LIDSLERARHTTLPRFIYALGIRHVGEATARDLARHFGSLNALIDASE----------EA 553

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFT 655
           L+ V  VG ++A+AI  F+  P N   +E L       P      +  +  +    +V T
Sbjct: 554 LLEVNDVGPVVAEAIRHFFSEPHNRMVIEQLRAAGVQWPEGPPAPRKPAGPLAGMTVVLT 613

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R  A+E +   GA V+  +S+KT+ ++ G + GSKL KA++LG+ I++EE   
Sbjct: 614 GTLPTLSREAAKERLEAAGAKVAGSVSKKTNYVVAGADAGSKLTKAEELGIPIVDEEGMR 673

Query: 716 FLLQ 719
            LL+
Sbjct: 674 RLLE 677


>gi|227114832|ref|ZP_03828488.1| NAD-dependent DNA ligase LigA [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 684

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 255/727 (35%), Positives = 403/727 (55%), Gaps = 54/727 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           MK  +  P E   +  A   ++ L + + +H+  Y+    P I D EYD L +   A+  
Sbjct: 1   MKPVKKEPAE---VNAAALRVAELRRVLRHHEYKYHVEDAPEIPDIEYDKLMQELKALEA 57

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P+L  S   + P  ++G     +  +V H +P LSL+ +++ E    F  RI      
Sbjct: 58  DHPELVTS---DSPTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRL-- 112

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           K+ + + F  E K+DG  +++ YE G  V AA RGDG +GE++++ IR +  IP  L  +
Sbjct: 113 KNGDDLTFCCELKLDGLAVSLLYENGVLVQAATRGDGTTGENITSNIRTVAAIPLRLEGD 172

Query: 181 I-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
             P  +EVRGEV++  + F  LN+E    G K +ANPRNAA+G LR+L+P     R L F
Sbjct: 173 NIPRRVEVRGEVFMKHSGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTF 232

Query: 239 FVHGLGK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           F +G+G           +E L + +  G PV++ ++       ++ +Y +++  RS+L +
Sbjct: 233 FCYGVGLLEGGELPASHWERLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSSLGF 292

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+V KVD   LQ++LG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVAR
Sbjct: 293 DIDGVVVKVDSLELQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVAR 352

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV + G +++NATLHN D I+ L            +++GDRV+V+RAG+VIP++V I+
Sbjct: 353 LEPVAVAGVIVSNATLHNADEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIV 401

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            +ER    +P  FP+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVS
Sbjct: 402 ESERPETVRPIVFPAACPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVS 455

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A ++EG+G + +D   + E     ++ PAD+F L      S   +  +   G  S TN
Sbjct: 456 RRALDVEGMGDKIIDQLVEKE----YVKTPADLFRL------SAGIMTGLDRMGPKSATN 505

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L +++ K ++ +L RF+++LGIR VG   A +LA ++ S +               D  +
Sbjct: 506 LVNALEKAKSTTLARFLYALGIRDVGESTAANLAAHFGSLEALFAA----------DEDA 555

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI------GRHEKNVSSEIENKK 651
           L+ VP VG ++A  +  F +   N   +  L      +I        + + + S    K 
Sbjct: 556 LLEVPDVGKVVAAHVRHFLEEEHNQTVIRELTDPAGINIHWPEVQVVNAEEIDSPFAGKT 615

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +V TG+L  + R +A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E
Sbjct: 616 VVLTGSLSILSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDE 675

Query: 712 EQFLFLL 718
            + + LL
Sbjct: 676 AEMIRLL 682


>gi|188533249|ref|YP_001907046.1| NAD-dependent DNA ligase LigA [Erwinia tasmaniensis Et1/99]
 gi|254781330|sp|B2VE40|DNLJ_ERWT9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|188028291|emb|CAO96149.1| DNA ligase [Erwinia tasmaniensis Et1/99]
          Length = 670

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 242/714 (33%), Positives = 397/714 (55%), Gaps = 51/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  + +++ L   + +++  Y+    P + D+EYD L      +  A P+L  +   + 
Sbjct: 1   MESLQDKITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRELEAAHPELLTT---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+  ++ E  R F  R+    +  DD  + F  E K
Sbjct: 58  PTQRVGAAPLSAFEQVRHEVPMLSLDNAFDEESYRAFNKRVQDRLKSSDD--LTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YE+G+ V AA RGDG +GE+++A +R I  IP  LS +  PE +EVRGEV+
Sbjct: 116 LDGLAVSLLYEQGELVRAATRGDGTTGENITANVRTIRAIPLRLSGDNIPERLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           +    F  +N++    G+K +ANPRNAA+G LR+L+P     R L FF +GLG       
Sbjct: 176 MPLAGFEKMNEQARRGGQKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     LQ+ +  G PV++ VR  ++   ++ +Y+++++ R  L +DIDG+V KVD   
Sbjct: 236 PRSHMARLQQFKAWGLPVSDRVRLCHSPSDVLDFYHQVEADRPALGFDIDGVVIKVDSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQITTVRDVEFQVGRTGAITPVARLEPVLVAGVMVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GDRV+++RAG+VIP+V+ ++ +     A+   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDRVVIRRAGDVIPQVMSVVESA--EGARDVIF 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R             RCTGGL C AQ+   LKHFVSR A +I+G+G++ 
Sbjct: 403 PTHCPVCGSDVERVEGE------VVARCTGGLICGAQRKGALKHFVSRRALDIDGMGEKI 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D     E     ++ PA++F L         K+  +   G  S  N+ D++ K +  + 
Sbjct: 457 IDQLVDKE----YVKNPAELFELTA------GKLTGLDRMGPKSAQNVVDALAKAKQTTF 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGI  VG   A +LA ++ + +               D  +LI VP VG ++A 
Sbjct: 507 ARFLYALGISEVGEATAANLAAHFGTLEALMAA----------DIDTLITVPDVGKVVAS 556

Query: 611 AIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F     N   +  L+++   +    +    + + S    K +V TG+L  + R  A
Sbjct: 557 HVRNFLDEESNREIIRLLVEKAGVNWPDVVVVKAEEIDSPFAGKTVVLTGSLSILSRDDA 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +E +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E++ + LL +
Sbjct: 617 KERLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEQEMMRLLGE 670


>gi|59712497|ref|YP_205273.1| NAD-dependent DNA ligase LigA [Vibrio fischeri ES114]
 gi|75353581|sp|Q5E3L1|DNLJ_VIBF1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|59480598|gb|AAW86385.1| DNA ligase, NAD(+)-dependent [Vibrio fischeri ES114]
          Length = 668

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 258/713 (36%), Positives = 401/713 (56%), Gaps = 50/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +SIEQ    L  L+Q+++YH   YY    P + D+EYD + ++  +I    P+L      
Sbjct: 1   MSIEQT---LDELKQQLNYHAYRYYVEDSPELPDAEYDRMMQQLLSIESEHPELVTV--- 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE      ++ H IP LSL+  ++ E+L  F  R+      K  +   F  E
Sbjct: 55  DSPSQRVGGEALDGFTQIQHEIPMLSLDNAFSDEELEAFEKRMNDRLISKPVS--LFCCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  +++ Y  GK V A  RGDG +GE+++  +R I  IP  L     P  +EVRGE
Sbjct: 113 PKLDGLAVSLLYVDGKLVQAGTRGDGTTGENITENVRTIRCIPLTLQGEGWPTRLEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE- 248
           V++ K  F ALN+  +  G KP+ANPRNAA+G LR+L+     TR L+F+ + +G     
Sbjct: 173 VFMPKAGFEALNERALKRGEKPFANPRNAAAGSLRQLDSKITATRPLSFYAYSVGVIEGG 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 Y+   +++  G P+    +Q ++   + +YY ++   R  L Y+IDG+V KVD+
Sbjct: 233 ELETSHYQRFVQLKSWGLPMCEETKQCHSLTEVKAYYKDILERRDALKYEIDGVVIKVDD 292

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  +
Sbjct: 293 IALQEQLGFVARAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 352

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            + +GD V+++RAG+VIP++V ++   R  D++  
Sbjct: 353 SNATLHNADEIARL-----------GVHIGDTVIIRRAGDVIPQIVSVVEARRPTDSKAI 401

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P  CP+C S + R          A  RC  GL C AQ+ E LKHFVSR A +++GLG 
Sbjct: 402 VYPIHCPVCGSNLERVEGE------AVTRCGAGLVCQAQRKEALKHFVSRKALDVDGLGD 455

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L      S   +  +   G  S  N+ D++NK +  
Sbjct: 456 KVVEQLVDKE----MVETPADLFKL------SAGLLTVLERMGPKSAQNVVDALNKAKAT 505

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA ++ + +                +  LI V  VGDI+
Sbjct: 506 TLPRFLYSLGIREVGEATAANLAAHFYTLEAIQVAT----------FEQLIEVSDVGDIV 555

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A+ ++ F+  P N   +E L +     P I   +++V   +  K +V TGTL K++R++A
Sbjct: 556 AKHVLNFFAEPHNKTVIEDLQEMGIHWPEIKALDESVPQPLAGKVVVLTGTLHKLKRNEA 615

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  + +LGA V+  +S+KTDI+  G+  GSKL KA++LGV++MNEEQ + LL 
Sbjct: 616 KAALQELGAKVTGSVSKKTDILFAGEAAGSKLAKAEELGVEVMNEEQLIELLN 668


>gi|166216287|sp|Q0HK31|DNLJ_SHESM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 688

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 248/713 (34%), Positives = 390/713 (54%), Gaps = 51/713 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +   A+  + +L Q ++ H+  YY    P I DSEYD L +R   +   +P    +   +
Sbjct: 19  TPHNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAA---D 75

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F  EP
Sbjct: 76  SPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDRVG-----EVSFCCEP 130

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEV 191
           K+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L   N PE++EVRGE 
Sbjct: 131 KLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVRGEA 190

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KTS 247
           ++ K  F ALN+       K + NPRNAA+G LR+L+     +R L+F+ + LG    TS
Sbjct: 191 FMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPTS 250

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              AK  YE LQ+++  G PV++ ++  +    + +YY ++ + RS LP++IDG+V KV+
Sbjct: 251 HELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRSYLPFEIDGVVMKVN 310

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q+ LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG  
Sbjct: 311 DIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVT 370

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN D I+ L            + VGD V+++RAG+VIP++V I+   R  DA+ 
Sbjct: 371 VSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKA 419

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
            +FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+G+G
Sbjct: 420 IAFPQHCPVCGSLVERLEGE------AVTRCSGGLFCEAQRKEAIKHFASRKALDIDGMG 473

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++     E     ++ PAD+F L        + +  +   G  S TNL  +I   + 
Sbjct: 474 DKIVEQLIDKE----LVQSPADLFKLPA------SMMTMLDRMGMKSATNLAQAIEAAKT 523

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RF+++LGIR VG   A +LA ++ S +                   LI+V  +G++
Sbjct: 524 TTLPRFLYALGIREVGEATASNLATHFGSLEALRVAT----------IEQLIQVEDIGEV 573

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKA 666
           +AQ +  F+  P N+  ++AL+            +     ++ +  V TGTL ++ R+ A
Sbjct: 574 VAQHVAHFFAQPHNLEVIDALIAAGVNWPTIAAPSADEQPLKGQTWVLTGTLNQLNRNDA 633

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK++ E++ L LL 
Sbjct: 634 KAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 686


>gi|113969850|ref|YP_733643.1| DNA ligase, NAD-dependent [Shewanella sp. MR-4]
 gi|113884534|gb|ABI38586.1| DNA ligase, NAD-dependent [Shewanella sp. MR-4]
          Length = 690

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 248/713 (34%), Positives = 390/713 (54%), Gaps = 51/713 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +   A+  + +L Q ++ H+  YY    P I DSEYD L +R   +   +P    +   +
Sbjct: 21  TPHNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAA---D 77

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F  EP
Sbjct: 78  SPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDRVG-----EVSFCCEP 132

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEV 191
           K+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L   N PE++EVRGE 
Sbjct: 133 KLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVRGEA 192

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KTS 247
           ++ K  F ALN+       K + NPRNAA+G LR+L+     +R L+F+ + LG    TS
Sbjct: 193 FMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPTS 252

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              AK  YE LQ+++  G PV++ ++  +    + +YY ++ + RS LP++IDG+V KV+
Sbjct: 253 HELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRSYLPFEIDGVVMKVN 312

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q+ LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG  
Sbjct: 313 DIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVT 372

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN D I+ L            + VGD V+++RAG+VIP++V I+   R  DA+ 
Sbjct: 373 VSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKA 421

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
            +FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+G+G
Sbjct: 422 IAFPQHCPVCGSLVERLEGE------AVTRCSGGLFCEAQRKEAIKHFASRKALDIDGMG 475

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++     E     ++ PAD+F L        + +  +   G  S TNL  +I   + 
Sbjct: 476 DKIVEQLIDKE----LVQSPADLFKLPA------SMMTMLDRMGMKSATNLAQAIEAAKT 525

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RF+++LGIR VG   A +LA ++ S +                   LI+V  +G++
Sbjct: 526 TTLPRFLYALGIREVGEATASNLATHFGSLEALRVAT----------IEQLIQVEDIGEV 575

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKA 666
           +AQ +  F+  P N+  ++AL+            +     ++ +  V TGTL ++ R+ A
Sbjct: 576 VAQHVAHFFAQPHNLEVIDALIAAGVNWPTIAAPSADEQPLKGQTWVLTGTLNQLNRNDA 635

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK++ E++ L LL 
Sbjct: 636 KAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 688


>gi|221198328|ref|ZP_03571374.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2M]
 gi|221208267|ref|ZP_03581271.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2]
 gi|221171915|gb|EEE04358.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2]
 gi|221182260|gb|EEE14661.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2M]
          Length = 691

 Score =  572 bits (1473), Expect = e-161,   Method: Composition-based stats.
 Identities = 256/713 (35%), Positives = 384/713 (53%), Gaps = 52/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
              + L  ++   +  YY   +P + D+EYD L R    +    PDL     P+ P  ++
Sbjct: 15  ARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLESDHPDLV---TPDSPTQRV 71

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132
           GG +      V H  P LSL   +  +D+  F  R+     K  D      + + +  E 
Sbjct: 72  GGAVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKTTDLAGSVTDPVEYACEL 131

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191
           K DG  I++RYE G FV A+ RGDG +GEDV+  +R I +IP  L  +  P +++VRGEV
Sbjct: 132 KFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGDRVPAVLDVRGEV 191

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249
            + K DF  LN+   A  ++ +ANPRNAA+G LR+L+P     R L+FF +G+G      
Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMP 251

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +L     LG PVN          G++ ++ ++   R +LPYDIDG+VYKV+  
Sbjct: 252 IPDTHSALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEKRESLPYDIDGVVYKVNRR 311

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q +LG  +R+PR+ ++HKF  ++A T+L+ I +Q+GRTG +TPVARLEPV +GGA +T
Sbjct: 312 DEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGAITPVARLEPVFVGGATVT 371

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F 
Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFV 420

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++
Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +
Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTT 524

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI++LGIRHVG   A+ LAK++ S                     L+ V  VG I+A
Sbjct: 525 LARFIYALGIRHVGESTAKDLAKHFGSLDPIMNAT----------IDELLEVNDVGPIVA 574

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++I +F+    N   +E L      +        K     +  K +V TGTL  + R  A
Sbjct: 575 ESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDDA 634

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +   GA V+  +S+KTD +I G   GSKL KA+ LG+ +++E+    LL+
Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVIAGIEAGSKLAKAEALGIPVLDEDGLHQLLE 687


>gi|78066803|ref|YP_369572.1| DNA ligase (NAD+) [Burkholderia sp. 383]
 gi|123742568|sp|Q39F38|DNLJ_BURS3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|77967548|gb|ABB08928.1| DNA ligase (NAD+) [Burkholderia sp. 383]
          Length = 691

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 255/713 (35%), Positives = 384/713 (53%), Gaps = 52/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
              + L  ++   +  YY   +P + D+EYD L R    +    P+L     P+ P  ++
Sbjct: 15  ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELV---TPDSPTQRV 71

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132
           GGE       V H  P LSL   +  ED+  F  R+     K  D        + +  E 
Sbjct: 72  GGEAAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALDKTTDLAGSVTEPVEYACEL 131

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191
           K DG  I++RYE+G FV A+ RGDG +GEDV+  +R I +IP  L     P +++VRGEV
Sbjct: 132 KFDGLAISLRYEQGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEV 191

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249
            + K DF  LN+   A  ++ +ANPRNAA+G LR+L+      R L+FF +G+G      
Sbjct: 192 LMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGMP 251

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  +L     LG PVN          G++ ++ ++   R +LPYDIDG+VYKV+  
Sbjct: 252 MLDTHSALLDWYESLGLPVNREREVVQGAEGLLGFFRKIGEKRESLPYDIDGVVYKVNRR 311

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q++LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +T
Sbjct: 312 DEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVT 371

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA  F 
Sbjct: 372 NATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFV 420

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S++ R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++
Sbjct: 421 MPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEK 474

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +
Sbjct: 475 IIDQLVE----LNLVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTT 524

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI+ LGIRHVG   A+ LAK++ S                     L+ V  VG I+A
Sbjct: 525 LARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA----------SIEELLEVNDVGPIVA 574

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           +++ +F+    N   +E L      +        K     +  K +V TGTL  + R  A
Sbjct: 575 ESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPTLTRDAA 634

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+
Sbjct: 635 KEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLVKAEELGIPVLDEDGLHQLLE 687


>gi|320157090|ref|YP_004189469.1| DNA ligase [Vibrio vulnificus MO6-24/O]
 gi|319932402|gb|ADV87266.1| DNA ligase [Vibrio vulnificus MO6-24/O]
          Length = 669

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 254/712 (35%), Positives = 395/712 (55%), Gaps = 48/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  ++ L  L+Q++ YH   YY    P I D+EYD + R   AI    P+       
Sbjct: 1   MS-ESKQQYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWI---SV 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG    S  +VTH IP LSL+  ++ E+L  F+ R          ++  F  E
Sbjct: 57  DSPSQRVGGVALDSFRQVTHEIPMLSLDNAFSDEELESFLKRAQDRMPSAHIDA--FCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  +++ YE G  V AA RGDG +GE+++  +R I ++P  L     P  IEVRGE
Sbjct: 115 PKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIASVPLKLQGEGWPSRIEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V++ K  F  LND     G K + NPRNAA+G LR+L+     TR L F+ + +G    I
Sbjct: 175 VFMPKAGFEKLNDIARKKGEKVFVNPRNAAAGSLRQLDSKITATRPLAFYAYSVGVVEGI 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             +   Y+   +++  G P+    +  N    + ++Y ++ + R  LPY+IDG+V K+D+
Sbjct: 235 SLSSSHYQRFLQLKQWGLPMCPETKLVNGLESVKAFYADILNRRDALPYEIDGVVIKIDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             +Q++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  +
Sbjct: 295 IVIQEKLGFVARAPRWAIAYKFPAQEELTMLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            + VGD V+++RAG+VIP++V ++ + R  D +  
Sbjct: 355 SNATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVKDRRKGDEKNI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+C S V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG 
Sbjct: 404 IFPTACPVCHSHVERIEGE------AVTRCSGGLVCQAQRKEALKHFVSRKALDVDGLGD 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+FTL      S   +  +   G  S  N+ +++N  +  
Sbjct: 458 KVIEQLVDKE----MVETPADLFTL------SAGVLTVLERMGPKSAQNIVNALNVAKET 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA+++ + +      +            LI VP +G+++
Sbjct: 508 TLARFLYSLGIREVGEATAANLARHFKTLEAIQTATH----------EQLIEVPDIGEVV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKA 666
           A+ I  F+   +N   V+AL+++        E    +   +  K +V TGTL ++ R  A
Sbjct: 558 ARHITAFFAEEKNQRVVQALIEQGIVWPAVEELGSEIPQPLAGKVVVLTGTLTQLSRGDA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  + +LGA V+  +S+KTDI+  G+  GSKL KAQ+LGV+I  E+  L LL
Sbjct: 618 KAALERLGAKVTGSVSKKTDIVFAGEAAGSKLTKAQELGVEIQTEQDLLALL 669


>gi|167039197|ref|YP_001662182.1| NAD-dependent DNA ligase [Thermoanaerobacter sp. X514]
 gi|256752857|ref|ZP_05493696.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913208|ref|ZP_07130525.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X561]
 gi|307723778|ref|YP_003903529.1| NAD-dependent DNA ligase [Thermoanaerobacter sp. X513]
 gi|254781440|sp|B0K3S1|DNLJ_THEPX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166853437|gb|ABY91846.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X514]
 gi|256748259|gb|EEU61324.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889893|gb|EFK85038.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X561]
 gi|307580839|gb|ADN54238.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X513]
          Length = 662

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 242/707 (34%), Positives = 384/707 (54%), Gaps = 49/707 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L ++I+YH+  YY   +P I D EYD L R    +   +P+L     P+ P  +
Sbjct: 4   KERIKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPELK---TPDSPSQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE        TH +P LSL   ++  +LR F  R+           + + +E KIDG 
Sbjct: 61  VGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRVREAVG-----DVEYVVELKIDGL 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YEKG F   + RGDG  GE+V+  ++ I +IP  L  ++   + VRGEV++ +  
Sbjct: 116 SVELIYEKGIFTVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDVS--LVVRGEVFMPRAS 173

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E   +G   +ANPRNAA+G LR+L+P     R L+ F+  L K      K   E
Sbjct: 174 FEKLNEEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEGRKFKTHIE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ +   GF +    ++ +    ++    E++++R  LPYDIDG V KV++   ++ LG
Sbjct: 234 TLEFLNEQGFKIIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNDLEKREILG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           + A+ PRW I+ K+  ++  T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE
Sbjct: 294 QTAKDPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVAISGSVVSRATLHNE 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYIK            +DIR+GD V+V++AGE+IP+VV+++  ER    + F  P  CP 
Sbjct: 354 DYIK-----------EKDIRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  VR L        A  RCTG L C AQ L  + HF S+DA +IEGLG   ++    
Sbjct: 403 CGALAVRLLGE------AIRRCTG-LNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLS 455

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   AD++ L+            +   GD SV NL ++I + +   L+R +F 
Sbjct: 456 K----GLIHNIADLYYLKYEDLI------QLERMGDKSVKNLLNAIEESKTRDLDRLLFG 505

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G++ A+ +A+++ +  N  +            +    ++P +G  +A++IV F+
Sbjct: 506 LGINLIGSKAAQVIAEHFKTMDNIMKA----------KFEDFTQLPDIGPKMARSIVSFF 555

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +N+  +E L           +  VS+  E K  V TG L+   R +A   + + G  
Sbjct: 556 AEKQNVEIIEKLKNAGVNMKKLSKGKVSNIFEGKTFVLTGALESYTREEATRMIEERGGK 615

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           V+  +S+KTD ++VG +PGSKL+KAQ+LG+KI++E+QF  +L+  N 
Sbjct: 616 VTNSVSKKTDYVLVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGENI 662


>gi|167038089|ref|YP_001665667.1| NAD-dependent DNA ligase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320116496|ref|YP_004186655.1| NAD-dependent DNA ligase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|254781439|sp|B0KBN6|DNLJ_THEP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166856923|gb|ABY95331.1| DNA ligase, NAD-dependent [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319929587|gb|ADV80272.1| DNA ligase, NAD-dependent [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 662

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 241/707 (34%), Positives = 384/707 (54%), Gaps = 49/707 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L ++I+YH+  YY   +P I D EYD L R    +   +P+L     P+ P  +
Sbjct: 4   KERIKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPELK---TPDSPSQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE        TH +P LSL   ++  +LR F  R+           + + +E KIDG 
Sbjct: 61  VGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRVREAVG-----DVEYVVELKIDGL 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YEKG F   + RGDG  GE+V+  ++ I +IP  L  ++   + VRGEV++ +  
Sbjct: 116 SVELIYEKGIFTVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDVS--LVVRGEVFMPRAS 173

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E   +G   +ANPRNAA+G LR+L+P     R L+ F+  L K      K   E
Sbjct: 174 FEKLNEEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEGRKFKTHIE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ +   GF +    ++ +    ++    E++++R  LPYDIDG V KV++   ++ LG
Sbjct: 234 TLEFLNEQGFKIIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNDLEKREILG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           + A+ PRW I+ K+  ++  T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE
Sbjct: 294 QTAKDPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVAISGSVVSRATLHNE 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYIK            +DIR+GD V+V++AGE+IP+VV+++  ER    + F  P  CP 
Sbjct: 354 DYIK-----------EKDIRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  VR L        A  RCTG L C AQ L  + HF S+DA +IEGLG   ++    
Sbjct: 403 CGALAVRLLGE------AIRRCTG-LNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLS 455

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   AD++ L+            +   GD SV NL ++I + +   L+R +F 
Sbjct: 456 K----GLIHNIADLYYLKYEDLI------QLERMGDKSVKNLLNAIEESKTRDLDRLLFG 505

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G++ A+ +A+++ +  N  +            +    ++P +G  +A++IV F+
Sbjct: 506 LGINLIGSKAAQVIAEHFKTMDNIMKA----------KFEDFTQLPDIGPKMARSIVSFF 555

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +N+  +E L           ++ V++  E K  V TG L    R +A   + + G  
Sbjct: 556 AEKQNVEIIEKLKNAGVNMKKIPKEKVNNIFEGKTFVLTGALGNYTREEATRIIEERGGK 615

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           V+  +S+KTD ++VG +PGSKL+KAQ+LG+KI++E+QF  +L+  N 
Sbjct: 616 VTNSVSKKTDYVLVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGENI 662


>gi|322418721|ref|YP_004197944.1| NAD-dependent DNA ligase [Geobacter sp. M18]
 gi|320125108|gb|ADW12668.1| DNA ligase, NAD-dependent [Geobacter sp. M18]
          Length = 668

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 257/710 (36%), Positives = 381/710 (53%), Gaps = 44/710 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A + ++ L +EI  H+  YY+   P I D+EYDAL R    +   FP+LA    P
Sbjct: 1   MEAQAAAERIAWLSKEIERHNRLYYEQDMPEITDAEYDALFRELQELEKKFPELAL---P 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       +V HS P LSLE  ++ +D+  F  R+ RF     D  I +  E
Sbjct: 58  DSPTGRVGGRPLAKFTQVRHSTPMLSLENAFSEQDMVDFDDRVKRFLGLAADAQISYICE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  + + Y  G     + RGDG  GE+V+  ++ I  +P    +   PE++ VRGE
Sbjct: 118 PKMDGVAVELVYRDGLLAIGSTRGDGVVGEEVTQNLKTIKDVPLRLETREPPELVTVRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249
           VY+    F   N E    G  P+ANPRNAA+G LR+L+      R L+ F +  G+ + +
Sbjct: 178 VYLPLAPFRKFNREREEAGEPPFANPRNAAAGSLRQLDSRITAKRPLSIFCYAPGELAGV 237

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q   L+ +     PVN   R       +++YY EM   R  LPY+IDG+V KVD F
Sbjct: 238 EFTSQSHFLETIPKWRLPVNPLTRVVTGIQAMLAYYQEMMEKRDDLPYEIDGVVVKVDSF 297

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            +Q++LGE++RSPRW  + KF  +QA+T +  I   +GRTG++TPVA L+PV++ G +++
Sbjct: 298 RMQRELGEKSRSPRWATAWKFPPRQATTVVEKIFHSVGRTGVITPVAFLKPVSVSGVMVS 357

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN + ++            +DIR GD V+V+RAG+VIP VV  ++++R   A    
Sbjct: 358 RATLHNWEELER-----------KDIREGDTVVVERAGDVIPAVVQALLDKRPEGAVKPE 406

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C   VVR  +    +         GLAC AQ LER+KHF SR A +IEGLG +
Sbjct: 407 IPTSCPVCGGEVVRLPDEVAVR-------CVGLACPAQLLERVKHFASRRAMDIEGLGDK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     +     I   ADI+ L+                G     NL ++I   +   
Sbjct: 460 FIEQLLSLK----LISDVADIYALKEADFMQF------ERMGKKLAENLLNAIEASKERD 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R IF+LG+RHVG   A+ LA  + S +N A+               L  +  VG  +A
Sbjct: 510 LSRLIFALGMRHVGEHTAKLLAGAFGSIENLAKASE----------EELTSIREVGPQVA 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            +IV+F++N  N+  +E L KE   S    EK +      K  VFTG L+K  R  A++ 
Sbjct: 560 ASIVDFFKNEENLRVIERL-KEAGVSPKVEEKRLGGRFTGKTFVFTGALEKFTRDGAKKM 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V Q GA  +  +S+KTD ++ G + GSKLEKA+QLGV+++ EE+FL L+Q
Sbjct: 619 VEQEGAHAAGSVSKKTDYVVAGADAGSKLEKARQLGVRVLTEEEFLELMQ 668


>gi|166216288|sp|Q0HWD2|DNLJ_SHESR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 688

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 247/713 (34%), Positives = 391/713 (54%), Gaps = 51/713 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + + A+  + +L Q ++ H+  YY    P I DSEYD L +R   +   +P    +   +
Sbjct: 19  TPQNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAA---D 75

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F  EP
Sbjct: 76  SPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDRVG-----EVSFCCEP 130

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEV 191
           K+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L   N PE++EVRGE 
Sbjct: 131 KLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVRGEA 190

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KTS 247
           ++ K  F ALN+       K + NPRNAA+G LR+L+     +R L+F+ + LG    TS
Sbjct: 191 FMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPTS 250

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              AK  YE LQ+++  G PV++ ++  +    + +YY ++ + R+ LP++IDG+V KV+
Sbjct: 251 HELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVVMKVN 310

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q+ LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG  
Sbjct: 311 DIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVT 370

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN D I+ L            + VGD V+++RAG+VIP++V I+   R  DA+ 
Sbjct: 371 VSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKA 419

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
            +FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+G+G
Sbjct: 420 IAFPQHCPVCGSLVERLEGE------AVTRCSGGLFCEAQRKEAIKHFASRKALDIDGMG 473

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++     E     ++ PAD+F L        + +  +   G  S TNL  +I   + 
Sbjct: 474 DKIVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGMKSATNLAQAIEAAKT 523

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RF+++LGIR VG   A +LA ++ S +                   LI+V  +G++
Sbjct: 524 TTLPRFLYALGIREVGEATAANLATHFGSLEALRVAT----------IEQLIQVEDIGEV 573

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKA 666
           +AQ +  F+  P N+  ++AL+            +     ++ +  V TGTL ++ R+ A
Sbjct: 574 VAQHVAHFFAQPHNLEVIDALITAGVNWPTIAAPSADEQPLKGQTWVLTGTLNQLNRNDA 633

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK++ E++ L LL 
Sbjct: 634 KAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 686


>gi|114047080|ref|YP_737630.1| DNA ligase, NAD-dependent [Shewanella sp. MR-7]
 gi|113888522|gb|ABI42573.1| DNA ligase, NAD-dependent [Shewanella sp. MR-7]
          Length = 690

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 247/713 (34%), Positives = 391/713 (54%), Gaps = 51/713 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + + A+  + +L Q ++ H+  YY    P I DSEYD L +R   +   +P    +   +
Sbjct: 21  TPQNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAA---D 77

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F  EP
Sbjct: 78  SPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDRVG-----EVSFCCEP 132

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEV 191
           K+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L   N PE++EVRGE 
Sbjct: 133 KLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVRGEA 192

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KTS 247
           ++ K  F ALN+       K + NPRNAA+G LR+L+     +R L+F+ + LG    TS
Sbjct: 193 FMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPTS 252

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              AK  YE LQ+++  G PV++ ++  +    + +YY ++ + R+ LP++IDG+V KV+
Sbjct: 253 HELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVVMKVN 312

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q+ LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG  
Sbjct: 313 DIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVT 372

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN D I+ L            + VGD V+++RAG+VIP++V I+   R  DA+ 
Sbjct: 373 VSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKA 421

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
            +FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+G+G
Sbjct: 422 IAFPQHCPVCGSLVERLEGE------AVTRCSGGLFCEAQRKEAIKHFASRKALDIDGMG 475

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++     E     ++ PAD+F L        + +  +   G  S TNL  +I   + 
Sbjct: 476 DKIVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGMKSATNLAQAIEAAKT 525

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RF+++LGIR VG   A +LA ++ S +                   LI+V  +G++
Sbjct: 526 TTLPRFLYALGIREVGEATAANLATHFGSLEALRVAT----------IEQLIQVEDIGEV 575

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKA 666
           +AQ +  F+  P N+  ++AL+            +     ++ +  V TGTL ++ R+ A
Sbjct: 576 VAQHVAHFFAQPHNLEVIDALITAGVNWPTIAAPSADEQPLKGQTWVLTGTLNQLNRNDA 635

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK++ E++ L LL 
Sbjct: 636 KAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 688


>gi|295676829|ref|YP_003605353.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1002]
 gi|295436672|gb|ADG15842.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1002]
          Length = 687

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 254/713 (35%), Positives = 387/713 (54%), Gaps = 49/713 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            +  + L  E+ + +  YY   +P + D+EYD L +  + I    PDL     P+ P  +
Sbjct: 15  AERAAWLRAELEHANYAYYVLDQPDLPDAEYDKLFKELERIEAEHPDLIV---PDSPTQR 71

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS---IFFTLEPKI 134
           +GGE       V H  P LSL   +  ED+  F  RI              + +  E K 
Sbjct: 72  VGGEAASGFEPVVHDQPMLSLNNGFADEDIVAFDKRIGDALGNNASEPPVPVDYAAELKF 131

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193
           DG  I++RY  G FV A+ RGDG +GE+V+  +R I +IP  L     P +++VRGEV +
Sbjct: 132 DGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLKLKGKRVPHVLDVRGEVLM 191

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFA 251
            K DF  LN+   A G++ +ANPRNAA+G LR+L+      R L+FF +G+G        
Sbjct: 192 FKRDFERLNERQRAAGQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGIEMP 251

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E+L   + +G PVN          G++ +++ +   R  LPYDIDG+VYKV+    
Sbjct: 252 PTHSELLDWYKEMGLPVNGERAVVQGAKGLLGFFHAVGEKRDRLPYDIDGVVYKVNRRDE 311

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNA
Sbjct: 312 QDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNA 371

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA+ F  P
Sbjct: 372 TLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALLDRRPTDAREFVMP 420

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S + R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +
Sbjct: 421 TQCPVCGSAIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKII 474

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D   +       +R PAD+F L          +  +  F D S  NL DS+ K ++ +L 
Sbjct: 475 DQLVEQN----LVRTPADLFNL------GFATLAELDRFADKSAQNLLDSLEKAKHTTLA 524

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFI++LGIRHVG   A+ LAK++ S                    +L+ V  VG ++A++
Sbjct: 525 RFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SLEALLEVNDVGPVVAES 574

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           I +F+    N   +E L      +        K     +  + +V TGTL  + R  A+E
Sbjct: 575 IHQFFAEDHNRTVIEQLRAPGRVTWPEGPPAPKAPQGVLAGQTVVLTGTLPNLSREDAKE 634

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            +   GA V+  +S+KT  ++ G + GSKL KA++LG+ +++E+    LL+ +
Sbjct: 635 MLEAAGAKVAGSVSKKTSYVVAGADAGSKLAKAEELGIPVLDEDGMRKLLEGH 687


>gi|332532506|ref|ZP_08408384.1| DNA ligase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038149|gb|EGI74596.1| DNA ligase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 672

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 247/714 (34%), Positives = 384/714 (53%), Gaps = 46/714 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S     ++++ L   +  H+  YY    P I DSEYD L R   A+    P+   +   
Sbjct: 1   MS-SSISEQINHLRTTLEQHNYNYYVLDTPSIPDSEYDRLLRELSALEMQHPEFLTA--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG       +V H +P LSL+  ++ E+   F  RI       D   + F  E
Sbjct: 57  DSPTQKVGGAALSKFEQVAHQVPMLSLDNAFSEEEFTAFNRRIKDRLMSTD--ELTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK+DG  ++I Y  G  V AA RGDG +GE+++  ++ I  +P  L  + P+ +EVRGEV
Sbjct: 115 PKLDGLAVSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKELEVRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEI 249
           ++    F  LN E    G K + NPRNAA+G LR+L+      R L F+ +  G      
Sbjct: 175 FMDSAGFDKLNTEAQKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGS 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +  Y+ L+K+   G P+    +        + YY+++ + R  L Y+IDG+V K+++ 
Sbjct: 235 IPEDHYQQLEKLTDWGLPLCPETKLVEGPKAALEYYSDILTRRGELKYEIDGVVIKINQK 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  AR+PRW I++KF  ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  ++
Sbjct: 295 ALQERLGFVARAPRWAIAYKFPAQEEITQLLDVEFQVGRTGAITPVARLEPVFVGGVTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I  L            ++VGD V+++RAG+VIP++  +++  R  DA+   
Sbjct: 355 NATLHNGDEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIE 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CPIC S V +          A  RCTGGL C AQ+ + +KHF SR A +I+GLG +
Sbjct: 404 FPVTCPICDSHVEKVEGE------AVARCTGGLVCPAQRKQAIKHFASRKALDIDGLGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D     E     I+ PAD+F L++         E++   G  S  NL  ++ + +  +
Sbjct: 458 IVDQLVDRE----LIKTPADLFILKQ------GHFESLERMGPKSAKNLVTALEEAKGTT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L +F++SLGIR  G   A++LA ++L+ +N                 SL +V  VG+I+A
Sbjct: 508 LAKFLYSLGIREAGEATAQNLANHFLTLENIINA----------SIDSLTQVSDVGEIVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
             +  F+    N+  V AL+++                +     V TGTL  + R+ A+ 
Sbjct: 558 THVRGFFDEEHNLEVVNALIEQGVNWPALSAPSEEEQPLAGLTYVLTGTLNTLNRNDAKA 617

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            + QLGA VS  +S KTD ++ G+  GSKL KAQ LG+ I+ E++ + LLQ++N
Sbjct: 618 RLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDILTEDELIELLQKHN 671


>gi|53723744|ref|YP_103200.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 23344]
 gi|67639492|ref|ZP_00438344.1| DNA ligase, NAD-dependent [Burkholderia mallei GB8 horse 4]
 gi|121600643|ref|YP_993378.1| DNA ligase, NAD-dependent [Burkholderia mallei SAVP1]
 gi|124385135|ref|YP_001029185.1| DNA ligase, NAD-dependent [Burkholderia mallei NCTC 10229]
 gi|126450807|ref|YP_001080885.1| DNA ligase, NAD-dependent [Burkholderia mallei NCTC 10247]
 gi|167004074|ref|ZP_02269848.1| DNA ligase, NAD-dependent [Burkholderia mallei PRL-20]
 gi|254178005|ref|ZP_04884660.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 10399]
 gi|254206491|ref|ZP_04912843.1| DNA ligase, NAD-dependent [Burkholderia mallei JHU]
 gi|254358100|ref|ZP_04974373.1| DNA ligase, NAD-dependent [Burkholderia mallei 2002721280]
 gi|81604820|sp|Q62JB9|DNLJ_BURMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215563|sp|A3MKU9|DNLJ_BURM7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215564|sp|A2SB66|DNLJ_BURM9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215565|sp|A1V575|DNLJ_BURMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|52427167|gb|AAU47760.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 23344]
 gi|121229453|gb|ABM51971.1| DNA ligase, NAD-dependent [Burkholderia mallei SAVP1]
 gi|124293155|gb|ABN02424.1| DNA ligase (NAD(+)) [Burkholderia mallei NCTC 10229]
 gi|126243677|gb|ABO06770.1| DNA ligase (NAD(+)) [Burkholderia mallei NCTC 10247]
 gi|147753934|gb|EDK60999.1| DNA ligase, NAD-dependent [Burkholderia mallei JHU]
 gi|148027227|gb|EDK85248.1| DNA ligase, NAD-dependent [Burkholderia mallei 2002721280]
 gi|160699044|gb|EDP89014.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 10399]
 gi|238520039|gb|EEP83503.1| DNA ligase, NAD-dependent [Burkholderia mallei GB8 horse 4]
 gi|243060513|gb|EES42699.1| DNA ligase, NAD-dependent [Burkholderia mallei PRL-20]
          Length = 691

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 264/733 (36%), Positives = 392/733 (53%), Gaps = 56/733 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +  + P  +    Q  K  + L  E+   +  YY   +P + D+EYD L      I  
Sbjct: 1   MARSPVEPPAS----QPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEA 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             PDL     P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K
Sbjct: 57  EHPDLV---TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D        + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR I  IP
Sbjct: 114 ATDLAGTVTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIP 173

Query: 175 RVLSLNIPEII-EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DI 232
             L       + +VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     
Sbjct: 174 LTLKGKRIPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITA 233

Query: 233 TRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
           +R L+FF +G+G             +L     LG PVN          G++++++ +   
Sbjct: 234 SRPLSFFAYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGER 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L  ID+Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLTAIDVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DAQ F  P+ CP C SR+ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVSAVLDRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L        + +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVALDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S               
Sbjct: 507 EKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAP------- 559

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIE 648
                +L+ V  VG I+A++I +F+    N   +E L      +        +     + 
Sbjct: 560 ---IDALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +
Sbjct: 617 GKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676

Query: 709 MNEEQFLFLLQQY 721
           ++E     LL+ +
Sbjct: 677 LDEAGMHTLLEGH 689


>gi|307132386|ref|YP_003884402.1| DNA ligase, NAD(+)-dependent [Dickeya dadantii 3937]
 gi|306529915|gb|ADM99845.1| DNA ligase, NAD(+)-dependent [Dickeya dadantii 3937]
          Length = 683

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 256/726 (35%), Positives = 404/726 (55%), Gaps = 52/726 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +++  P + +S    +  + +L  ++ YH+  Y+    P I D+EYD L      +  
Sbjct: 1   MLEKESKPADDISTVSVQ--IEALRAQLRYHEYKYHVEDAPEIPDAEYDKLMNALKTLEQ 58

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           A P+L     P+ P  ++G     +   + H +P LSL+ +++      F  RI      
Sbjct: 59  AHPELV---TPDSPTQRVGATPLDAFDTIAHEVPMLSLDNVFDETSFLAFSKRINDRL-- 113

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           K+D  + F  E K+DG  +++ YE G  V AA RGDG +GE+++A IR +  IP  L  +
Sbjct: 114 KNDGELTFCCELKLDGLAVSLLYENGLLVRAATRGDGTTGENITANIRTVGAIPLRLRGD 173

Query: 181 I-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
             P+ +EVRGEV++    F ALN+E    G K +ANPRNAA+G LR+L+P    TR L F
Sbjct: 174 NIPQRLEVRGEVFMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITATRPLTF 233

Query: 239 FVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
             +G+G           ++ L + R  G PV++ +R       ++ +Y +++  R TL +
Sbjct: 234 LCYGVGLVEGGALPDTHWQRLMQFRDWGLPVSDRIRLCTGSDAVLDFYRQVEQERETLGF 293

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+V KV+E +LQ++LG  AR+PRW ++ KF  ++  T L D++ Q+GRTG +TPVAR
Sbjct: 294 DIDGVVIKVNELTLQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVAR 353

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV + G +++NATLHN D I+ L            I++GDRV V+RAG+VIP++V ++
Sbjct: 354 LEPVAVAGVVVSNATLHNADEIERL-----------GIQIGDRVAVRRAGDVIPQIVSVV 402

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           ++ER  DA+P  FP  CP+C S + R          A  RCTGGL C AQ+ E LKHFVS
Sbjct: 403 LSERPADARPVVFPEQCPVCGSELERVDGE------AVTRCTGGLFCGAQRKEALKHFVS 456

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A ++EG+G + +D   + E     ++ PAD+F L      S   +  +   G  S  N
Sbjct: 457 RRALDVEGMGDKIIDQLVEKE----YVKTPADLFRL------SAGILTGLDRMGPKSAQN 506

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L +++NK ++ +  RF+++LGIR VG   A SLA ++ + +               D  +
Sbjct: 507 LVNALNKAKSTTFARFLYALGIRDVGEATAASLASHFGTLEALQSA----------DLEA 556

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHE----KNVSSEIENKKL 652
           L +V  VG ++A  +  F     N   ++ L+ E +            +   S    K +
Sbjct: 557 LQQVQDVGIVVATHVRNFLDEAHNQQVIQELISENIGIHWPAPVVVDVEASDSPFAGKTV 616

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TG+L  + R +A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+++++E 
Sbjct: 617 VLTGSLTLLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLTKAQELGIEVIDEA 676

Query: 713 QFLFLL 718
           + + LL
Sbjct: 677 EMMRLL 682


>gi|323526494|ref|YP_004228647.1| NAD-dependent DNA ligase [Burkholderia sp. CCGE1001]
 gi|323383496|gb|ADX55587.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1001]
          Length = 688

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 261/711 (36%), Positives = 390/711 (54%), Gaps = 49/711 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            +  + L  E+   +  YY   +P + D+EYD L +  ++I    PDL     P+ P  +
Sbjct: 15  AERAAWLRAELERANYAYYVLDQPDLPDAEYDKLFKELESIEAQHPDLIV---PDSPTQR 71

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ---KKDDNSIFFTLEPKI 134
           +GGE       V H  P LSL   +  ED+  F  R+        K+    + +  E K 
Sbjct: 72  VGGEAASGFEPVVHDQPMLSLNNGFADEDIVAFDKRVGDALGNNAKEPPVPVDYATELKF 131

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193
           DG  I++RY  G FV AA RGDG +GE+V+  IR + +IP  L     P I++VRGEV +
Sbjct: 132 DGLAISLRYVDGVFVQAATRGDGTTGENVTENIRTVRSIPLKLKGKRVPHILDVRGEVLM 191

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFA 251
            K DF  LN+   A G K +ANPRNAA+G LR+L+P     R L+FF +G+G        
Sbjct: 192 FKRDFERLNERQRAAGHKEFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMEMP 251

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E+L   + LG PVN+         G+++++  +   R  LPYDIDG+VYKV+    
Sbjct: 252 ATHSELLDWYKELGLPVNSERAVVKGAEGLLAFFRAVGEKRDKLPYDIDGVVYKVNRRDE 311

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q  LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNA
Sbjct: 312 QDALGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNA 371

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED ++            +DIR+GD V+V+RAG+VIP+VV  ++  R  DA+ F  P
Sbjct: 372 TLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALLERRPDDAREFVMP 420

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S + R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +
Sbjct: 421 THCPVCGSSIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKII 474

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D   +       +R PAD+F L        + +  +  F D S  NL DS+ K ++ +L 
Sbjct: 475 DQLVEQN----LVRTPADLFNL------GFSTLAELDRFADKSAQNLLDSLEKAKHTTLA 524

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFI++LGIRHVG   A+ LAK++ S     +              +L+ V  VG ++A++
Sbjct: 525 RFIYALGIRHVGESTAKDLAKHFGSLDPIMEA----------SVEALLEVNDVGPVVAES 574

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           I +F+    N   +E L      +        K     +  K +V TGTL  + R +A+E
Sbjct: 575 IHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTIVLTGTLPTLAREEAKE 634

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+
Sbjct: 635 MLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKLLE 685


>gi|126453906|ref|YP_001066758.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106a]
 gi|134277579|ref|ZP_01764294.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 305]
 gi|167739178|ref|ZP_02411952.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 14]
 gi|167824768|ref|ZP_02456239.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 9]
 gi|167846299|ref|ZP_02471807.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei B7210]
 gi|167894881|ref|ZP_02482283.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 7894]
 gi|167903270|ref|ZP_02490475.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei NCTC 13177]
 gi|167919520|ref|ZP_02506611.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei BCC215]
 gi|217421846|ref|ZP_03453350.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 576]
 gi|226198948|ref|ZP_03794511.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pakistan 9]
 gi|237812814|ref|YP_002897265.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei MSHR346]
 gi|242317106|ref|ZP_04816122.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106b]
 gi|254179316|ref|ZP_04885915.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1655]
 gi|254198094|ref|ZP_04904516.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei S13]
 gi|166215566|sp|A3NWN7|DNLJ_BURP0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|126227548|gb|ABN91088.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106a]
 gi|134251229|gb|EBA51308.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 305]
 gi|169654835|gb|EDS87528.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei S13]
 gi|184209856|gb|EDU06899.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1655]
 gi|217395588|gb|EEC35606.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 576]
 gi|225929048|gb|EEH25072.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pakistan 9]
 gi|237506455|gb|ACQ98773.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei MSHR346]
 gi|242140345|gb|EES26747.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106b]
          Length = 691

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 264/733 (36%), Positives = 393/733 (53%), Gaps = 56/733 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +  + P  +    Q  K  + L  E+   +  YY   +P + D+EYD L      I  
Sbjct: 1   MARSPVEPPAS----QPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEA 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             PDL     P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K
Sbjct: 57  EHPDLV---TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D        + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR I  IP
Sbjct: 114 ATDLAGTVTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIP 173

Query: 175 RVLSLNIPEII-EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DI 232
             L       + +VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     
Sbjct: 174 LTLKGKRIPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITA 233

Query: 233 TRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
           +R L+FF +G+G             +L     LG PVN          G++++++ +   
Sbjct: 234 SRPLSFFAYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGER 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DAQ F  P+ CP C SR+ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVSAVLDRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L        + +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVALDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S               
Sbjct: 507 EKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAP------- 559

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIE 648
                +L+ V  VG I+A++I +F+    N   +E L      +        +     + 
Sbjct: 560 ---IDALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +
Sbjct: 617 GKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676

Query: 709 MNEEQFLFLLQQY 721
           ++E     LL+ +
Sbjct: 677 LDEAGMHTLLEGH 689


>gi|260769097|ref|ZP_05878031.1| DNA ligase [Vibrio furnissii CIP 102972]
 gi|260617127|gb|EEX42312.1| DNA ligase [Vibrio furnissii CIP 102972]
          Length = 669

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 248/710 (34%), Positives = 386/710 (54%), Gaps = 47/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   + L+ L+  + YH   YY    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MQNVEQRLTELKDTLHYHAIRYYVEDDPTIPDAEYDRLMRELLDLEAQHPELV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG       +VTH IP LSL+  ++ ++L  F  R+             F  EPK
Sbjct: 58  PSQRVGGAPLAGFEQVTHEIPMLSLDNAFDDDELNSFHRRMGDRVLAAKTAK--FCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ Y  G  V AA RGDG +GE+++  +R I +IP  L     P  IEVRGEV+
Sbjct: 116 LDGLAVSLLYVDGVLVQAATRGDGTTGENITENVRTIKSIPLRLQGTGWPTRIEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF- 250
           + K  F  +N E +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEKMNAEALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVIQGGTL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               YE   +++  G P++   ++  +   + +YY ++ + RS LPY+IDG+V KVD+ +
Sbjct: 236 VDSHYERFLQLKGWGLPMSPETKRVESLDEVKAYYQDIMTRRSELPYEIDGVVIKVDDIA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQEQLGFVARAPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GD V+++RAG+VIP++V ++   R   A+   F
Sbjct: 356 ATLHNADEIERL-----------GVKIGDTVVIRRAGDVIPQIVSVVNELRPETAREILF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG + 
Sbjct: 405 PAQCPVCQSDVERVEGE------AVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+        ++  +   G  S  N+ +++N  +  +L
Sbjct: 459 IEQLVDKE----MVSTPADLFRLRA------GELTILERMGPKSAQNIVNALNTAKATTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF++SLGIR VG   A +LA ++L+     +               LI VP VG I+A 
Sbjct: 509 PRFLYSLGIREVGEATAMNLAHHFLTLDAIREAT----------IEQLIEVPDVGTIVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   RN   VE L+       +I     +    +  K +V TGTL ++ R  A+ 
Sbjct: 559 HVHAFFTQERNQKVVEELIALGIHWQAIAPKTDDEPQPLAGKVVVLTGTLSQLSRSDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +  LGA V+  +S+ TDI+  G+  GSKL KAQ+LG++I +E+  + ++
Sbjct: 619 ALQALGAKVTGSVSKNTDILFAGEAAGSKLAKAQELGIEIRDEQDLIAMI 668


>gi|163760776|ref|ZP_02167856.1| DNA ligase, NAD-dependent [Hoeflea phototrophica DFL-43]
 gi|162282098|gb|EDQ32389.1| DNA ligase, NAD-dependent [Hoeflea phototrophica DFL-43]
          Length = 739

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 296/720 (41%), Positives = 429/720 (59%), Gaps = 23/720 (3%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
            +   PIEALS  +A+ EL  L  EI+ HD+ Y++   PI+ D+EYDA KRR  AI   F
Sbjct: 38  TQDTKPIEALSEAEAKAELDRLAAEIARHDEAYHRKDAPIVSDAEYDAFKRRNLAIEERF 97

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P L  +   + P  K+G  +     K+TH +  LSLE  ++ ED R F+ R+ RF     
Sbjct: 98  PHLRLA---DSPSLKVGAPVAEGFGKITHKVAMLSLENAFSDEDARDFVNRVKRFLNLTP 154

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI- 181
            + +  T EPKIDG  +++RYE G  V AA RGDG +GE+V+A  R I  IP  L+    
Sbjct: 155 FDELALTAEPKIDGLSLSLRYENGTLVSAATRGDGATGENVTANARTISDIPHQLAGEDV 214

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240
           PE+IEVRGEVY++K DF+ALN    A G++ Y NPRN A+G LR+L+P     R L FF 
Sbjct: 215 PEVIEVRGEVYMTKADFMALNARQAAAGKQTYVNPRNTAAGSLRQLDPKITAERPLRFFA 274

Query: 241 HGLGKTSEIFAKG-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           +  G+         Q EM+      GF VN  + +  +   ++++Y  +++ R+ LPYDI
Sbjct: 275 YAWGEVLPSLPYPTQSEMVAAFARWGFAVNPLMARVTSAEALIAHYRLIEAERAGLPYDI 334

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD+  LQ++LG  +RSPRW I+HKF  ++AST L  IDIQ+GRTG LTPVARLE
Sbjct: 335 DGVVYKVDDLGLQRRLGFVSRSPRWAIAHKFPAEKASTLLTAIDIQVGRTGALTPVARLE 394

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG ++TNATLHN + I+ L            +R+GD V ++RAG+VIP+V+ ++ +
Sbjct: 395 PVTVGGVVVTNATLHNAEEIERL-----------GVRIGDTVQIQRAGDVIPQVLGVVSS 443

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
               DA  F+FPS CP      V       G      RC+G  AC  Q+ E LKHFVSR 
Sbjct: 444 P--EDAVAFAFPSICPCDLKTPVIREETAGGVEGVVRRCSGEFACPFQRKEHLKHFVSRK 501

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ-TSTTKIENILGFGDVSVTNL 538
           AF+I+GLG++Q++FF++  D    I  PADIFTL+ R +     +++N  G+GD S   L
Sbjct: 502 AFDIDGLGEKQIEFFYE--DKTLPINQPADIFTLKMRDEANGLQRLKNRDGYGDTSAQKL 559

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           +D+I  +R ++LER IFSLGIRHVG + A++LA+ Y  +         I   ++     +
Sbjct: 560 FDAIEAKREVALERLIFSLGIRHVGEQTAKTLARAYGDWTTLHAAALAIADGDSAAVEEM 619

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
             +  +G  + +AI  F+    NI  V+ L+ +++           S +    +VFTG+L
Sbjct: 620 DALDDIGPAVVEAIGRFFGEDHNIAMVDNLVSQLTVLDAEKPA-QDSPVAGLTVVFTGSL 678

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +K+ R +A+    +LGA V+  +S+KTDI++ G   GSKL KAQ LGV+ M+E+ +  L+
Sbjct: 679 EKMTRDEAKAMAERLGAKVAGSVSKKTDILVAGPGAGSKLTKAQGLGVRTMDEDGWFELV 738


>gi|53719773|ref|YP_108759.1| DNA ligase [Burkholderia pseudomallei K96243]
 gi|167816389|ref|ZP_02448069.1| DNA ligase [Burkholderia pseudomallei 91]
 gi|81379503|sp|Q63T07|DNLJ_BURPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|52210187|emb|CAH36166.1| DNA ligase [Burkholderia pseudomallei K96243]
          Length = 691

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 264/733 (36%), Positives = 393/733 (53%), Gaps = 56/733 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +  + P  +    Q  K  + L  E+   +  YY   +P + D+EYD L      I  
Sbjct: 1   MARSPVEPPAS----QPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEA 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             PDL     P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K
Sbjct: 57  EHPDLV---TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D        + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR I  IP
Sbjct: 114 ATDLAGTVTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIP 173

Query: 175 RVLSLNIPEII-EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DI 232
             L       + +VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     
Sbjct: 174 LTLKGKRIPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITA 233

Query: 233 TRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
           +R L+FF +G+G             +L     LG PVN          G++++++ +   
Sbjct: 234 SRPLSFFAYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGER 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DAQ F  P+ CP C SR+ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVSAVLDRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L        + +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVGLDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S               
Sbjct: 507 EKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAP------- 559

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIE 648
                +L+ V  VG I+A++I +F+    N   +E L      +        +     + 
Sbjct: 560 ---IDALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +
Sbjct: 617 GKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676

Query: 709 MNEEQFLFLLQQY 721
           ++E     LL+ +
Sbjct: 677 LDEAGMHTLLEGH 689


>gi|114768813|ref|ZP_01446439.1| DNA ligase [alpha proteobacterium HTCC2255]
 gi|114549730|gb|EAU52611.1| DNA ligase [alpha proteobacterium HTCC2255]
          Length = 711

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 279/718 (38%), Positives = 433/718 (60%), Gaps = 16/718 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E L   QA KEL  L + +   +  YY    PI+ D+EYD LK+R   I   FP+L  
Sbjct: 6   PVEKLDKMQAEKELIRLNEILDRANSDYYSNDAPILSDAEYDTLKKRNLDIESRFPNLKL 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
               N   +KIG + + +  K+ H++  LSL   ++ +D+  F  R+ +     +D  I 
Sbjct: 66  K---NSVSDKIGSKPSSTFKKIKHTVKMLSLANGFDEQDIIDFDQRVKKILGF-EDRVIS 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           +  EPKIDG  ++++Y  GK   A  RGDG  GE+V+     I  IP+ +      I+E+
Sbjct: 122 YVAEPKIDGLSLSLKYIDGKLFQATTRGDGEVGENVTENAITIQNIPKYIHNAPS-ILEI 180

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+S NDF  LN +   +  K ++NPRNAA+G LR+L+     +R L F+ +  G+ 
Sbjct: 181 RGEVYMSLNDFNELNIKQKNIDAKIFSNPRNAAAGSLRQLDSKVTASRPLKFYAYAWGEV 240

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S   +  QY  + ++R  GF  N+  ++      ++S+Y+ + + R+ L YDIDG+VYKV
Sbjct: 241 STPISDTQYNAIDRLRKFGFSTNDLTKKCYGPKELISHYDNISNKRADLGYDIDGVVYKV 300

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D  S Q +LG R+ +PRW I+HKF  + A T L  I+IQ+GRTG L+PVARL+PVN+GG 
Sbjct: 301 DNLSYQDRLGFRSTTPRWAIAHKFPAEIAQTWLESIEIQVGRTGALSPVARLKPVNVGGV 360

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNEDYIKG D+ G ++RGG DIR GD V V RAG+VIPK+ D+ V++R   ++
Sbjct: 361 IVSNATLHNEDYIKGKDSKGNIIRGGNDIREGDWVYVYRAGDVIPKISDVDVSKRISTSK 420

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P++FPSFCP C S        +  +  +  RC GG+ C AQ ++ L HFVSR AF+I+GL
Sbjct: 421 PYTFPSFCPECSSP------SERIEGDSVARCIGGITCPAQAVQGLAHFVSRGAFDIDGL 474

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++ F++       ++ PADIF L+ R +    ++EN  G+G  S  NL+++I  +R
Sbjct: 475 GNKQIEQFYQ----LGWVKEPADIFKLKLRYENGIKRLENRDGWGQKSANNLFNAIESKR 530

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I L + +++LGIRHVG   A  L+K+Y S+ N  + +N   +     W  L+ +  VG+
Sbjct: 531 TIPLNKMLYALGIRHVGETSATLLSKHYKSFDNLKKSMNEAKSLEGSSWSDLMSIDGVGE 590

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I+A+A+V+ + NP     ++ L++E+            S +E   +VFTG+L+ + R +A
Sbjct: 591 ILAKAVVQIFNNPAQRQIIDNLVEELVIENEIENIVSGSPLEGMVVVFTGSLELMTRSEA 650

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +    + GA VS  +S+KTD+++ G   GSK +KA +LGVK+++E ++L L+   N +
Sbjct: 651 KISAEKFGAKVSGSVSKKTDLVVSGPGAGSKEKKAIELGVKVLSESEWLKLINLNNLS 708


>gi|223936891|ref|ZP_03628800.1| DNA ligase, NAD-dependent [bacterium Ellin514]
 gi|223894460|gb|EEF60912.1| DNA ligase, NAD-dependent [bacterium Ellin514]
          Length = 680

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 244/713 (34%), Positives = 382/713 (53%), Gaps = 45/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++  +A+   + L +EI  HD+ YY  +KP I D  YD L      +   FPDL  S   
Sbjct: 1   MTHNEAKTRHTQLVEEIRGHDNAYYVEAKPTISDQAYDRLYHELLDLEKKFPDLITS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ GE       V H  P +SL+  ++ +D+R F+ R+ R      + ++ + LE
Sbjct: 58  DSPSQRVSGEPLKEFKPVHHLSPMMSLDNTYSQQDVRDFVGRVQRLL---PNETLEWILE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEVR 188
           PK+DG  I ++YEKG FV  A RGDG +G+DV++ ++ I +I   L  +    P+++E+R
Sbjct: 115 PKVDGVAINLKYEKGVFVCGATRGDGTTGDDVTSNLKTIRSIAGKLKASGRKLPDVVEIR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG-KT 246
           GEVY+ K  F  +N E +A G +P+ANPRN+A+G L++L+P     R L+  V+GLG   
Sbjct: 175 GEVYLPKAAFTKINAERVAAGEEPFANPRNSAAGSLKQLDPRIVAKRPLDVIVYGLGVFE 234

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K   E+L  ++  G        +  +   ++   NE+  +R    Y+ DG V K+
Sbjct: 235 GAERPKEHDEVLAWLKSAGCKTPEKTWKCCSADELIDAINELDQLRRKFTYETDGAVIKL 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           + F+L++++G  +++PRW I++K+A +QA T+L  I IQ+GRTG LTPVA LEPV + G+
Sbjct: 295 NSFALRERIGFTSKAPRWAIAYKYAAEQAETKLKAITIQVGRTGALTPVAELEPVFLAGS 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I+ ATLHNED ++            +DIRVGD V +++AGEVIP VV +++ +R     
Sbjct: 355 TISRATLHNEDELRR-----------KDIRVGDTVTIEKAGEVIPAVVGVVLTKRTGKEV 403

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F FP+ CP C S+V R    + G      RC    AC AQ   R++H+ +R A +IEG 
Sbjct: 404 QFQFPTHCPECGSKVARTEGTENGAAGVVWRCLNA-ACPAQIRGRIEHWCARGAMDIEGG 462

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+  +            +R  +D+++L   Q         +   G+ S  N  D +   +
Sbjct: 463 GEALVSQLVTK----GLVREVSDLYSLTLDQVAG------LERMGEKSAQNFLDGVQASK 512

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              + R +F LGI HVGA +A+ L + + +  +                  L  V  +G+
Sbjct: 513 TRDMWRLLFGLGILHVGAGVAKRLGRRFTTLDDIFAASQ----------EQLTEVEDIGE 562

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRH 664
           +IA +IV+++Q P+N   +E L K                     K  V TGTL  ++R 
Sbjct: 563 VIAHSIVQWHQEPKNRELIELLRKAGLNFNSELYKPAAALGHFAGKTFVLTGTLPTLKRE 622

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +A   +  LG  VS  +S+KTD I+ G++ GSKLEKAQ+LGVKI++E  FL L
Sbjct: 623 EAAAKIEALGGKVSGSVSKKTDYIVAGEDAGSKLEKAQKLGVKIIDEAAFLKL 675


>gi|126441747|ref|YP_001059474.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 668]
 gi|166215567|sp|A3NAV3|DNLJ_BURP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|126221240|gb|ABN84746.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 668]
          Length = 691

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 264/733 (36%), Positives = 393/733 (53%), Gaps = 56/733 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +  + P  +    Q  K  + L  E+   +  YY   +P + D+EYD L      I  
Sbjct: 1   MARSPVEPPAS----QPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEA 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             PDL     P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K
Sbjct: 57  EHPDLV---TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D        + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR I  IP
Sbjct: 114 ATDLAGTVTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIP 173

Query: 175 RVLSLNIPEII-EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DI 232
             L       + +VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     
Sbjct: 174 LTLKGKRLPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITA 233

Query: 233 TRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
           +R L+FF +G+G             +L     LG PVN          G++++++ +   
Sbjct: 234 SRPLSFFAYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGER 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DAQ F  P+ CP C SR+ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVSAVLDRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L        + +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVALDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S               
Sbjct: 507 EKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAP------- 559

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIE 648
                +L+ V  VG I+A++I +F+    N   +E L      +        +     + 
Sbjct: 560 ---IDALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +
Sbjct: 617 GKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676

Query: 709 MNEEQFLFLLQQY 721
           ++E     LL+ +
Sbjct: 677 LDEAGMHTLLEGH 689


>gi|52425821|ref|YP_088958.1| NAD-dependent DNA ligase LigA [Mannheimia succiniciproducens
           MBEL55E]
 gi|81386743|sp|Q65RN7|DNLJ_MANSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|52307873|gb|AAU38373.1| Lig protein [Mannheimia succiniciproducens MBEL55E]
          Length = 675

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 254/715 (35%), Positives = 391/715 (54%), Gaps = 45/715 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L   + YH+  Y+    P I D+EYD L  +  A+    P+L  +   
Sbjct: 1   MTIMDINQQIKQLRDTLRYHEYQYHVLDDPKIPDAEYDRLFHQLKALEQQHPELITA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G +      ++TH +P LSL+  ++ E+   F+ RI           + F  E
Sbjct: 58  DSPTQRVGAKPLAGFAQITHELPMLSLDNAFSDEEFNAFVKRIQDRLIVLP-QPLTFCCE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  ++I Y  G    AA RGDG +GED++  IR I  IP  L + N P  +EVRGE
Sbjct: 117 PKLDGLAVSIFYVNGVLTQAATRGDGTTGEDITLNIRTIRNIPLQLLTDNPPARLEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS-E 248
           V++    F  LN+  +  G K +ANPRNAA+G LR+L+P   +R    F  + +G     
Sbjct: 177 VFMPHEGFNRLNERALEHGEKTFANPRNAAAGSLRQLDPKITSRRPLVFNAYSVGIAEGV 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 YE LQ ++ +G PVN+ V+  +    ++ +Y  M+  R TL YDIDG V K+++
Sbjct: 237 ELPATHYERLQWLKSVGIPVNSEVQLCDGSEKVLEFYRSMQQKRPTLGYDIDGTVLKIND 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ++LG  +++PRW I++KF  ++  TRL D++ Q+GRTG +TPVA+L PV + G  +
Sbjct: 297 IGLQRELGFISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLAPVFVAGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L           DI +GD V+++RAG+VIP+++ ++   R  +AQ  
Sbjct: 357 SNATLHNGDEIARL-----------DIAIGDTVVIRRAGDVIPQIIGVLHERRPANAQAI 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+C S++VR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G 
Sbjct: 406 VFPTQCPVCGSKIVRIEGE------AVARCTGGLFCDAQRKEALKHFVSRRAMDIDGVGA 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     IR PAD+F L          +  +   G+ S  N  DS+ K +N 
Sbjct: 460 KLIEQLVDKE----LIRTPADLFKL------DLITLMRLERMGEKSAQNALDSLEKAKNT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFIF+LGIR VG   A +LA ++ +                     L  V  VG+++
Sbjct: 510 TLARFIFALGIREVGEATALNLANHFKNLDALQAA----------SPEQLQEVADVGEVV 559

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           A  I  F++   NI AV  L+ +         ++   +  + K +V TGTL ++ R++ +
Sbjct: 560 ANRIYVFWREQHNIDAVNDLIAQGIHWETVETKEAGENPFKGKTVVLTGTLTQMGRNETK 619

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + + QLGA  +  +S KT  +I GDN GSKL KAQ+LGV +M+E +FL ++  Y 
Sbjct: 620 DLLQQLGAKAAGSVSAKTHFVIAGDNAGSKLTKAQELGVAVMSEAEFLAIVNAYK 674


>gi|289165264|ref|YP_003455402.1| DNA ligase [Legionella longbeachae NSW150]
 gi|288858437|emb|CBJ12315.1| DNA ligase [Legionella longbeachae NSW150]
          Length = 671

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 254/712 (35%), Positives = 391/712 (54%), Gaps = 46/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + I++ +++ + L+ +I  +D  YY   +P++ D EYD   R    +    P+L  +   
Sbjct: 1   MIIDEIKEQAARLKDKIRQYDYHYYVLDEPLVPDVEYDRCFRALQNLEAQHPELLTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG    +   VTH  P LSL  +++ E+L+ F+ R+     +     + FT E
Sbjct: 58  DSPTQRVGGTPADAFAPVTHRQPMLSLSNVFSEEELQAFVKRVTEKLDEPA-QQLVFTCE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-EVRGE 190
           PK+DG  + I YE G  VYAA RGDG +GE+++A I+ I  IP VL  N P    E+RGE
Sbjct: 117 PKLDGLAVNITYENGVLVYAATRGDGTTGENITANIKTIAAIPLVLRSNKPPRFIEIRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSE 248
           VY+ K+ F   N +   +G K +ANPRNAA+G LR+LNP     R L  + +G+G     
Sbjct: 177 VYMPKSGFEQYNKKAKELGEKTFANPRNAAAGSLRQLNPAVTANRPLAIYCYGIGACEDY 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 +E LQ ++ LGF V++  ++     G + YY  M + R  LP++IDG+VYKVD 
Sbjct: 237 RLPNTHWEQLQLLKELGFKVSSESKREVGIKGCLDYYCNMLARRDQLPFEIDGVVYKVDS 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+QLG  +R+PR+  +HKF   +  T +L +D Q+GRTG LTPVARL PVN+ G  +
Sbjct: 297 IALQQQLGFISRAPRFACAHKFPATEEITEILAVDFQVGRTGALTPVARLAPVNVAGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I             +DIR+GD+V+++RAG+VIP+VV +++ +R  D +  
Sbjct: 357 SNATLHNMDEITR-----------KDIRIGDKVIIRRAGDVIPEVVSVVLEQRPADTKEI 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VVR+         A  RC GGL C AQ    + HF SR A +IEGLG 
Sbjct: 406 CLPLKCPVCDSDVVREEGE------AVARCIGGLFCKAQLKRMMWHFASRKAMHIEGLGS 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             ++           +R   D++ L        + + N+   G+ S  NL  ++   +  
Sbjct: 460 VLIEQLVDE----GIVRHLPDLYRL------DVSTLANLPRMGEKSAKNLLQALEHSKKT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF+++LGIR +G   AR LA+++   +  +                L+ +  +G + 
Sbjct: 510 TLSRFLYALGIREIGEASARVLAEHFGDIEAISNATEA----------DLMSLEDMGPVG 559

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  IV F+    N+  ++ LL+     P I + ++N    +  K +V TGTL  + R +A
Sbjct: 560 AANIVHFFAQTHNLQVIQHLLELGIHWPKIEKKQQNKEHPLFGKTVVLTGTLNTLSREEA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +  LGA VS  +S KTD +I G   G+KL+KA  LG+ I++EEQFL +L
Sbjct: 620 KAKLLILGAKVSGSVSAKTDYVIAGIEAGTKLDKANNLGISILDEEQFLHML 671


>gi|297544111|ref|YP_003676413.1| NAD-dependent DNA ligase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841886|gb|ADH60402.1| DNA ligase, NAD-dependent [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 662

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 238/707 (33%), Positives = 384/707 (54%), Gaps = 49/707 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L ++I+YH+  YY   +P I D EYD L R    +   +P+L     P+ P  +
Sbjct: 4   KERIKELREKINYHNYKYYVLDQPEISDYEYDMLMRELIELEEKYPELK---TPDSPSQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE        TH +P LSL   ++  +L+ F  R+           + + +E KIDG 
Sbjct: 61  VGGEPLKEFEPFTHIVPMLSLANAFSEGELKDFDRRVREAVG-----DVEYVVELKIDGL 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G F   + RGDG +GE+V+  ++ I +IP  L  N+   + VRGEV++ +  
Sbjct: 116 SVELIYENGIFTVGSTRGDGITGENVTPNLKTIKSIPLRLKDNVS--LVVRGEVFMPRAS 173

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E   +G   +ANPRNAA+G LR+L+P     R L+ F+  L +      K   E
Sbjct: 174 FERLNTEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQRVEGRKFKTHVE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ ++  GF V    ++ +    ++    E+++++  LPYDIDG V KV++   ++ LG
Sbjct: 234 TLEFLKEQGFKVIPIHKKCSNIDEVIREIEEIRNLKDKLPYDIDGAVVKVNDLEKREILG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           + A+ PRW I+ K+  ++  T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE
Sbjct: 294 QTAKEPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVPISGSVVSRATLHNE 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYIK            +DIR+GD V++++AGE+IP+VV++I  ER    + F  P  CP+
Sbjct: 354 DYIK-----------EKDIRIGDTVIIQKAGEIIPEVVEVIKEERTGQEREFVMPDRCPV 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  VR          A  RCT    C AQ L  + HF S+DA +IEGLG   ++    
Sbjct: 403 CGALAVRLPGE------AVRRCTSV-NCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLS 455

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +      I   AD++ L+            +   GD SV NL ++I + +   L+R +F 
Sbjct: 456 N----GLIHNIADLYYLKYEDLI------QLERMGDKSVKNLLNAIEESKTRDLDRLLFG 505

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G++ A+ +A+++ +  +  +            +    ++P VG  +A++IV F+
Sbjct: 506 LGINLIGSKAAQVIAEHFKTIDDIMKA----------KFEDFTKLPDVGPKMARSIVSFF 555

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +N+  +E L K         ++ VSS  E K  V TG L    R +A   + + G  
Sbjct: 556 AEKQNVETIEKLKKAGVNMKKLSKEKVSSIFEGKTFVLTGALGNYTREEATRIIEERGGK 615

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           V+  +S+KTD ++VG +PGSKL+KAQ+LG++I++E+QF  +L+  N 
Sbjct: 616 VTNSVSKKTDYVLVGKDPGSKLKKAQELGIEIIDEKQFEEMLKGENI 662


>gi|270159993|ref|ZP_06188649.1| DNA ligase [Legionella longbeachae D-4968]
 gi|269988332|gb|EEZ94587.1| DNA ligase [Legionella longbeachae D-4968]
          Length = 671

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 254/712 (35%), Positives = 391/712 (54%), Gaps = 46/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + I++ +++ + L+ +I  +D  YY   +P++ D EYD   R    +    P+L  +   
Sbjct: 1   MIIDEIKEQAARLKDKIRQYDYHYYVLDEPLVPDVEYDRCFRALQNLEAQHPELLTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG    +   VTH  P LSL  +++ E+L+ F+ R+     +     + FT E
Sbjct: 58  DSPTQRVGGTPADAFAPVTHRQPMLSLSNVFSEEELQAFVKRVTEKLDEPA-QQLVFTCE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-EVRGE 190
           PK+DG  + I YE G  VYAA RGDG +GE+++A I+ I  IP VL  N P    E+RGE
Sbjct: 117 PKLDGLAVNITYENGVLVYAATRGDGTTGENITANIKTIAAIPLVLRSNKPPRFIEIRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSE 248
           VY+ K+ F   N +   +G K +ANPRNAA+G LR+LNP     R L  + +G+G     
Sbjct: 177 VYMPKSGFEQYNKKAKELGEKTFANPRNAAAGSLRQLNPAVTANRPLAIYCYGIGACEDY 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 +E LQ ++ LGF V++  ++     G + YY  M + R  LP++IDG+VYKVD 
Sbjct: 237 RLPNTHWEQLQLLKELGFKVSSESKREVGIKGCLXYYCNMLARRDQLPFEIDGVVYKVDS 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+QLG  +R+PR+  +HKF   +  T +L +D Q+GRTG LTPVARL PVN+ G  +
Sbjct: 297 IALQQQLGFISRAPRFACAHKFPATEEITEILAVDFQVGRTGALTPVARLAPVNVAGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I             +DIR+GD+V+++RAG+VIP+VV +++ +R  D +  
Sbjct: 357 SNATLHNMDEITR-----------KDIRIGDKVIIRRAGDVIPEVVSVVLEQRPADTKEI 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VVR+         A  RC GGL C AQ    + HF SR A +IEGLG 
Sbjct: 406 CLPLKCPVCDSDVVREEGE------AVARCIGGLFCKAQLKRMMWHFASRKAMHIEGLGS 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             ++           +R   D++ L        + + N+   G+ S  NL  ++   +  
Sbjct: 460 VLIEQLVDE----GIVRHLPDLYRL------DVSTLANLPRMGEKSAKNLLQALEHSKKT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF+++LGIR +G   AR LA+++   +  +                L+ +  +G + 
Sbjct: 510 TLSRFLYALGIREIGEASARVLAEHFGDIEAISNATEA----------DLMSLEDMGPVG 559

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  IV F+    N+  ++ LL+     P I + ++N    +  K +V TGTL  + R +A
Sbjct: 560 AANIVHFFAQTHNLQVIQHLLELGIHWPKIEKKQQNKEHPLFGKTVVLTGTLNTLSREEA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +  LGA VS  +S KTD +I G   G+KL+KA  LG+ I++EEQFL +L
Sbjct: 620 KAKLLILGAKVSGSVSAKTDYVIAGIEAGTKLDKANNLGISILDEEQFLHML 671


>gi|238919178|ref|YP_002932692.1| NAD-dependent DNA ligase LigA [Edwardsiella ictaluri 93-146]
 gi|238868746|gb|ACR68457.1| DNA ligase, NAD-dependent, putative [Edwardsiella ictaluri 93-146]
          Length = 672

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 264/711 (37%), Positives = 397/711 (55%), Gaps = 51/711 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
             ++L  L   + +H+  YY    P I D+EYD L  +   +    P L      + P  
Sbjct: 2   IEQQLEQLRDALRHHEYQYYVLDDPQITDAEYDRLMMQLKQLEAVHPALVTV---DSPSQ 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG    +  +V H +P LSL+ +++ E  + F  R++     K D  + F  EPK+DG
Sbjct: 59  RVGGAPLAAFGQVHHEVPMLSLDNVFDEESYQAFDKRLHERL--KSDEPLTFCCEPKLDG 116

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             +++ YE+G  V AA RGDG +GED+++ ++ I  IP  L    IP  IEVRGEV++ +
Sbjct: 117 LAVSLLYEQGVLVRAATRGDGTTGEDITSNVKTIRAIPLRLQGEAIPARIEVRGEVFMPQ 176

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFAKG 253
           + F A+N+E    G K +ANPRNAA+G LR+L+P     R L F+ +G G+         
Sbjct: 177 DGFEAMNEEARRRGAKIFANPRNAAAGSLRQLDPRITAQRPLTFYCYGTGQLEGGALPDS 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+ LQ+ +  G PV+  VR       +++YY ++   R TL +DIDG+V KVD+ ++Q+
Sbjct: 237 HYQCLQRFKSWGLPVSERVRLCCGSAEVLAYYRQIGQARPTLGFDIDGVVIKVDDIAIQE 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW  + KF  ++  TRL  ++ Q+GRTG +TPVARLEPV + G  ++NATL
Sbjct: 297 RLGFVARAPRWATAFKFPAQEQMTRLNGVEFQVGRTGAITPVARLEPVLVAGVTVSNATL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+ L           D+R+GD V+V+RAG+VIP+VV ++   R  DA    FP+ 
Sbjct: 357 HNADEIERL-----------DLRIGDTVIVRRAGDVIPQVVGVVEAMRPRDAHEIGFPTH 405

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S V R          A  RC+GGL C+AQ+ E LKHFVSR A ++EG+G + ++ 
Sbjct: 406 CPVCGSEVERTEGE------AVARCSGGLICAAQRKESLKHFVSRRAMDVEGMGDKVIEQ 459

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +  PAD++ L      S  K+  +   G  S T L  ++++ R  +L RF
Sbjct: 460 LVDKE----YVATPADLYRL------SAGKLTGLERMGPKSATKLIAALDRSRETTLARF 509

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGIR VG   A +LA ++ S Q               D  SL RVP VG+++A  IV
Sbjct: 510 LFALGIREVGEATAANLASHFGSLQALRAA----------DLESLKRVPEVGEVVASHIV 559

Query: 614 EFYQNPRNICAVEALLK-EVSP-----SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            F     N   ++ L+  EV       +  +    V S    K +V TG+L  + R +A+
Sbjct: 560 HFLSEEHNRQVIDELISDEVGIRWPEGAPAQSAPAVDSPFAGKTVVLTGSLSVLSRDEAK 619

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + +T LGA VS  +S+KTD++I GD  GSKL KA  LG+++++E Q L +L
Sbjct: 620 DRLTALGARVSGSVSKKTDLVIAGDAAGSKLAKANILGIEVIDEAQMLRML 670


>gi|269836970|ref|YP_003319198.1| DNA ligase, NAD-dependent [Sphaerobacter thermophilus DSM 20745]
 gi|269786233|gb|ACZ38376.1| DNA ligase, NAD-dependent [Sphaerobacter thermophilus DSM 20745]
          Length = 680

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 252/716 (35%), Positives = 385/716 (53%), Gaps = 52/716 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +     ++ ++ L + I  ++  YY   +P + D+EYDAL      +  A P+L     P
Sbjct: 1   MDDVDVQERIAELRKLIERYNYEYYVLDQPSVSDAEYDALMNELRELEAAHPELI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G   + +   V H IP LSL   ++ ++LR++  R+YR   ++D   I F  E
Sbjct: 58  DSPTQRVGAPPSSAFGTVRHEIPMLSLANAFSEQELRQWAERVYRLAGRRD---IEFVTE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEV 187
           PKIDG+ ++I Y  G +   A RGDG  GEDV+A IR +  +P  L      ++PE++EV
Sbjct: 115 PKIDGSAVSILYRNGVYERGATRGDGIQGEDVTANIRTVRNVPLRLHDVDGVHVPEVLEV 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE+Y+ K+DF ALN      G   +ANPRNAA+G LR+L+P    +R L F+   +G  
Sbjct: 175 RGEIYMRKSDFEALNRRRGEAGEILFANPRNAAAGSLRQLDPNVTASRPLRFYAWDVGII 234

Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                       L  +R LG P         T   + +      S+R  L ++IDG+V K
Sbjct: 235 EGGQHNGTHTANLDLLRTLGIPTAPDYHVWQTIDEVWAECERWLSLRDELDFEIDGVVVK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++  LQ +LG  +R PRW I++KF   Q +T L DI++ +GRTG L PVA L+PV IGG
Sbjct: 295 VNDEDLQAELGTVSREPRWAIAYKFPAIQKTTILRDIEVNVGRTGSLNPVAILDPVEIGG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++  ATLHNED I+ L           D+ +GDRV+V+R+G+VIPK+V ++V+ R  D 
Sbjct: 355 VVVRRATLHNEDEIRRL-----------DLLIGDRVVVQRSGDVIPKIVAVVVSARDGDE 403

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +PF+ P  CP+C +  VR             R     +C A+  E ++HFVSR A +IEG
Sbjct: 404 RPFTMPDHCPVCGAAAVRLEGE-------VMRYCVNASCPARLREAVRHFVSRGAMDIEG 456

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
            G +  + F         I   ADI+ L         +I  + GFGD  + NL  SI   
Sbjct: 457 FGSRLAEQFVD----LGLIHSVADIYEL------DWERIRQLEGFGDKRIANLQASIEAS 506

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   L R + +LGIRHVG   AR LA+++ S    A                L  +P  G
Sbjct: 507 KERPLSRLLHALGIRHVGERNARLLAQHFNSMDRIAAA----------SIEELQGIPGFG 556

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQR 663
            ++A+A+ +F++ P+N+  ++ L                V   +  K +V TG L+ + R
Sbjct: 557 RVVAEAVYDFFREPQNLALIQRLRAHGLRMTEADGDTAPVDGRLAGKTVVLTGRLESMTR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +AQE + ++GA V++ +SRKTD +IVG +PGSK ++A++LGV+I++E+ FL LL 
Sbjct: 617 EQAQEALRRMGATVTSSVSRKTDFVIVGQDPGSKADRARELGVQILDEQAFLALLN 672


>gi|269960659|ref|ZP_06175031.1| DNA ligase [Vibrio harveyi 1DA3]
 gi|269834736|gb|EEZ88823.1| DNA ligase [Vibrio harveyi 1DA3]
          Length = 670

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 254/713 (35%), Positives = 390/713 (54%), Gaps = 48/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E   + L  L++ + YH   YY    P I D+EYD + R    I    P+L      
Sbjct: 1   MS-ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPELVTV--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+      +VTH +P LSL+  ++  +L  F  R              +  E
Sbjct: 57  DSPSQRVGGQPLSEFSQVTHEVPMLSLDNAFDDAELDGFHKRAQDRV--VGHTIKQYCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PK+DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L   + P  +EVRGE
Sbjct: 115 PKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTISAIPLKLQGKDWPTRLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249
           V++ K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G     
Sbjct: 175 VFMPKAGFDKLNENARKKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVEGA 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A   YE   +++  G P+    ++ ++   + +YY ++ + R  L Y+IDG+V KVD+
Sbjct: 235 TLANSHYERFLQIKSWGLPMCPETKRVDSLEEVKAYYQDILTRREALAYEIDGVVIKVDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            ++Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  +
Sbjct: 295 IAIQERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            + VGD+V+++RAG+VIP+VV +I   R   A+  
Sbjct: 355 SNATLHNADEIERLQ-----------VMVGDQVVIRRAGDVIPQVVSVIKERRPETAREI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++GLG 
Sbjct: 404 LFPDACPVCGSHVERIEGE------AVTRCTGGLVCQAQRKEALKHFVSRKALDVDGLGD 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L      S   +  +   G  S TN+ +++ K +  
Sbjct: 458 KVIEQLVDRE----MVETPADLFKL------SAGVLTVLERMGPKSATNVVNALEKSKLT 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA+++ +     Q               LI V  +G I+
Sbjct: 508 TLPRFLYSLGIREVGEATAANLAQHFKNLDAIQQATE----------EQLIEVQDIGVIV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A+ I  F+   +N   V  LL +    P I   ++ V   +E K +V TGTL ++ R +A
Sbjct: 558 AKHITTFFDEEKNQAVVRDLLGQGINWPDIAAPQEGVELPLEGKTVVLTGTLSQLGRSEA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L+ 
Sbjct: 618 KEALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQTEQDLLNLMN 670


>gi|27363688|ref|NP_759216.1| NAD-dependent DNA ligase LigA [Vibrio vulnificus CMCP6]
 gi|81449211|sp|Q8DFK5|DNLJ_VIBVU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|27359804|gb|AAO08743.1| DNA ligase, NAD-dependent [Vibrio vulnificus CMCP6]
          Length = 669

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 254/712 (35%), Positives = 395/712 (55%), Gaps = 48/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  ++ L  L+Q++ YH   YY    P I D+EYD + R   AI    P+       
Sbjct: 1   MS-ESKQQYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWI---SV 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG    S  +VTH IP LSL+  ++ E+L  F+ R          ++  F  E
Sbjct: 57  DSPSQRVGGVALDSFRQVTHEIPMLSLDNAFSDEELESFLKRAQDRMPSAHIDA--FCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  +++ YE G  V AA RGDG +GE+++  +R I ++P  L     P  IEVRGE
Sbjct: 115 PKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIASVPLKLQGEGWPSRIEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V++ K  F  LND     G K + NPRNAA+G LR+L+     TR L F+ + +G    I
Sbjct: 175 VFMPKAGFEKLNDIARKKGEKVFVNPRNAAAGSLRQLDSKITATRPLAFYAYSVGVVEGI 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             +   Y+   +++  G P+    +  N    + ++Y ++ + R  LPY+IDG+V K+D+
Sbjct: 235 SLSSSHYQRFLQLKQWGLPMCPETKLVNGLESVKAFYADILNRRDALPYEIDGVVIKIDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             +Q++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  +
Sbjct: 295 IVIQEKLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            + VGD V+++RAG+VIP++V ++ + R  D +  
Sbjct: 355 SNATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVKDRRKGDEKNI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+C S V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG 
Sbjct: 404 IFPTACPVCHSHVERIEGE------AVTRCSGGLVCQAQRKEALKHFVSRKALDVDGLGD 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+FTL      S   +  +   G  S  N+ +++N  +  
Sbjct: 458 KVIEQLVDKE----MVETPADLFTL------SAGVLTVLERMGPKSAQNIVNALNVAKET 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA+++ + +      +            LI VP +G+++
Sbjct: 508 TLARFLYSLGIREVGEATAANLARHFKTLEAIQTATH----------EQLIEVPDIGEVV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKA 666
           A+ I  F+   +N   V+AL+++        E    +   +  K +V TGTL ++ R  A
Sbjct: 558 ARHITAFFAEEKNQRVVQALIEQGIVWPAVEELGSEIPQPLAGKVVVLTGTLTQLSRGDA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  + +LGA V+  +S+KTDI+  G+  GSKL KAQ+LGV+I  E+  L LL
Sbjct: 618 KAALERLGAKVTGSVSKKTDIVFAGEAAGSKLTKAQELGVEIQTEQDLLALL 669


>gi|76810783|ref|YP_333980.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710b]
 gi|167720173|ref|ZP_02403409.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei DM98]
 gi|167911510|ref|ZP_02498601.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 112]
 gi|254189298|ref|ZP_04895809.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pasteur 52237]
 gi|254259109|ref|ZP_04950163.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710a]
 gi|254297202|ref|ZP_04964655.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 406e]
 gi|123771899|sp|Q3JR23|DNLJ_BURP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76580236|gb|ABA49711.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710b]
 gi|157807762|gb|EDO84932.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 406e]
 gi|157936977|gb|EDO92647.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pasteur 52237]
 gi|254217798|gb|EET07182.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710a]
          Length = 691

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 264/733 (36%), Positives = 393/733 (53%), Gaps = 56/733 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +  + P  +    Q  K  + L  E+   +  YY   +P + D+EYD L      I  
Sbjct: 1   MARSPVEPPAS----QPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEA 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             PDL     P+ P  ++GGE       V H  P LSL   +  ED+  F  R+     K
Sbjct: 57  EHPDLV---TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDK 113

Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
             D        + +  E K DG  I++RYE G+FV A+ RGDG +GEDV+  IR I  IP
Sbjct: 114 ATDLAGTVTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIP 173

Query: 175 RVLSLNIPEII-EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DI 232
             L       + +VRGEV + K DF  LN+   A G++ +ANPRNAA+G LR+L+     
Sbjct: 174 LTLKGKRIPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITA 233

Query: 233 TRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
           +R L+FF +G+G             +L     LG PVN          G++++++ +   
Sbjct: 234 SRPLSFFAYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGER 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LPYDIDG+VYKV+    Q +LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG 
Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VIP
Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +++ R  DAQ F  P+ CP C SR+ R  +       A  RCTGGL C AQ+ + 
Sbjct: 403 EVVSAVLDRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQA 456

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L HF  R A +I+GLG++ +D   +       +R PAD+F L        + +  +  F 
Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVALDRFA 506

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  NL DS+ K ++ +L RFI++LGIRHVG   A+ LAK++ S               
Sbjct: 507 EKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMHAP------- 559

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIE 648
                +L+ V  VG I+A++I +F+    N   +E L      +        +     + 
Sbjct: 560 ---IDALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLA 616

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTL  + R  A+E +   GA V+  +S+KTD ++ G + GSKL KA++LG+ +
Sbjct: 617 GKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676

Query: 709 MNEEQFLFLLQQY 721
           ++E     LL+ +
Sbjct: 677 LDEAGMHTLLEGH 689


>gi|307250556|ref|ZP_07532498.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306857372|gb|EFM89486.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 682

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 251/708 (35%), Positives = 401/708 (56%), Gaps = 46/708 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   +   + P  ++
Sbjct: 16  AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ E+L  F+ R+  +  +    ++ F  EPK+DG  
Sbjct: 73  GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKND 197
           ++I Y  G    AA RGDG +GED+++ IR +  IP      N P  +EVRGEV++ +  
Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTVRNIPLKLNMDNPPARLEVRGEVFMPQKG 191

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFAKGQ 254
           F  LN+  +  G K +ANPRNAA+G LR+L+P    +     N +  G+ ++ +      
Sbjct: 192 FETLNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L+       T +  +   G+ S  N  +SI K +N +L RF+
Sbjct: 475 MERE----LVHTPADLFKLE------HTTLMRLERMGEKSAQNALNSIEKAKNTTLARFL 524

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++ +                  +  L  V  VG+++A  IV 
Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574

Query: 615 FYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+Q P N+  VE L+ +          +   + ++ K +V TGTL ++ R +A+  +   
Sbjct: 575 FWQEPHNVAVVEDLISQGVHWQNVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L  + 
Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLTKAQELGVKVLTEQEFIALTGEN 682


>gi|330817444|ref|YP_004361149.1| DNA ligase [Burkholderia gladioli BSR3]
 gi|327369837|gb|AEA61193.1| DNA ligase [Burkholderia gladioli BSR3]
          Length = 691

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 263/730 (36%), Positives = 393/730 (53%), Gaps = 55/730 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +  + P  +    Q  +  + L  E+   +  YY   +P + D+EYD L R    I  
Sbjct: 1   MARSPVEPPAS----QPSERAAWLRNELERANHAYYVLDQPDLPDAEYDRLFRELQQIEA 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             PDL     P+ P  ++GGE       V H  P LSL   ++ ED+  F  R+     K
Sbjct: 57  EHPDLI---TPDSPTQRVGGEAATGFTPVVHDAPMLSLNNGFSDEDIAAFDKRVADALDK 113

Query: 121 KDDN-------SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI 173
              +        + +  E K DG  I++RYE G+FV AA RGDG +GEDV+  +R I +I
Sbjct: 114 APADLAGTAIDPVEYACELKFDGLAISLRYEHGRFVQAATRGDGTTGEDVTENVRTIRSI 173

Query: 174 PRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-D 231
           P  L   N P +++VRGEV + K DF  LN       ++ +ANPRNAA+G LR+L+    
Sbjct: 174 PLTLKGKNPPALLDVRGEVLMYKRDFARLNQRQREAEQREFANPRNAAAGSLRQLDSKIT 233

Query: 232 ITRYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290
             R L+FF +G+G             +L      G PVN          G++++++++  
Sbjct: 234 AQRPLSFFAYGIGVLEGATMPDTHSGLLDWYAGFGLPVNRERAVVKGAEGLLAFFHKVGE 293

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
            R  LPYDIDG+VYKV+    Q++LG  +R+PR+ ++HKF  ++A TRLL I++Q+GRTG
Sbjct: 294 QREALPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTRLLAIEVQVGRTG 353

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TPVARLEPV +GGA +TNATLHNED ++            +DIR+GD V+V+RAG+VI
Sbjct: 354 AITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVI 402

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P+VV  +++ R  DA  F  P+ CP+C SR+ R          A  RCTGGL C AQ+ +
Sbjct: 403 PEVVSALLDRRPADAAEFVMPTECPVCGSRIERLPEE------AIARCTGGLFCPAQRKQ 456

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
            L HF  R A +I+GLG++ +D   +       +R PAD+F L          +  +  F
Sbjct: 457 ALWHFAQRRALDIDGLGEKIIDQLVEQN----LVRTPADLFHL------GFATLAALDRF 506

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
            D S  NL DS+ K R+ +L RFI++LGIRHVG   A+ LAK++ S Q            
Sbjct: 507 ADKSAQNLLDSLEKARHTTLGRFIYALGIRHVGESTAKDLAKHFGSLQPIMDATT----- 561

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIEN 649
                  L+ V  VG ++A+++ +F+    N   +  L ++V    G          +  
Sbjct: 562 -----EQLLEVNDVGPVVAESLHQFFAEEHNRTVIAQLREKVDWPEGPPAPREPQGVLAG 616

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K +V TGTL  + R +A+  +   GA V+  +S+KTD ++ G   GSKL KA++LG+ ++
Sbjct: 617 KTVVLTGTLPTLGRDEAKALLEAAGAKVTGSVSKKTDYVVAGAEAGSKLAKAEELGIPVL 676

Query: 710 NEEQFLFLLQ 719
           +E+    LL+
Sbjct: 677 DEDGMHLLLK 686


>gi|323499974|ref|ZP_08104932.1| NAD-dependent DNA ligase LigA [Vibrio sinaloensis DSM 21326]
 gi|323314991|gb|EGA68044.1| NAD-dependent DNA ligase LigA [Vibrio sinaloensis DSM 21326]
          Length = 669

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 257/712 (36%), Positives = 395/712 (55%), Gaps = 48/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  +++L+ L + + YH   YY    P I D+EYD L R    +    PDL      
Sbjct: 1   MSKE-IQEKLNQLRETLHYHGVKYYVEDSPEIPDAEYDRLMRELMELESQHPDLM---SL 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG        V H IP LSL+  ++  +L  F  R+         +   F  E
Sbjct: 57  DSPSQRVGGAALDGFGSVNHEIPMLSLDNAFDDAELESFNKRMADRIPSAKFDV--FCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L     PE IEVRGE
Sbjct: 115 PKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLQGQGWPERIEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249
           V++ K  F  LN++ +  G K + NPRNAA+G LR+L+     TR L+F+ + +G     
Sbjct: 175 VFMPKAGFDKLNEQALKKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVQGA 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             +   YE   +++  G P+    ++ +    + +YY ++   R  LPY+IDG+V KVD+
Sbjct: 235 TLSSSHYERFLQLKGWGLPMCPETKRVSGLDEVKAYYQDILQRREALPYEIDGVVIKVDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  +
Sbjct: 295 IALQEQLGFVARAPRWAIAYKFPAQEELTTLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            + +GD V+++RAG+VIP++V ++V+ R   A+  
Sbjct: 355 SNATLHNADEIERLS-----------VMIGDTVVIRRAGDVIPQIVSVVVDRRPDSAREI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+CQS+V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG+
Sbjct: 404 VFPALCPVCQSQVERIEGE------AVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGE 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L      S   I  +   G  S  N+ D++N+ +  
Sbjct: 458 KVIEQLVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVDALNQSKQT 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA+++ S Q   +  +            LI V  +G+I+
Sbjct: 508 TLPRFLYSLGIREVGEATAANLAQHFKSLQAVTKATH----------EELIAVSDIGEIV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  I  F+    N   +  LL++    P I   +++    +  K +V TG+L ++ R  A
Sbjct: 558 ASHITAFFAQESNQQVIGQLLEQGINWPEIEERDESTPQPLAGKTVVLTGSLSQLSRSDA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +  LGA V+  +S+KTDI+  G+N GSKL KAQ LGV+I  E+  + L+
Sbjct: 618 KAALQDLGAKVTGSVSKKTDILFAGENAGSKLAKAQDLGVEIRTEQDLIDLI 669


>gi|37679166|ref|NP_933775.1| NAD-dependent DNA ligase LigA [Vibrio vulnificus YJ016]
 gi|81758078|sp|Q7MMT5|DNLJ_VIBVY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|37197908|dbj|BAC93746.1| NAD-dependent DNA ligase [Vibrio vulnificus YJ016]
          Length = 669

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 255/712 (35%), Positives = 394/712 (55%), Gaps = 48/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  ++ L  L+Q++ YH   YY    P I D+EYD + R   AI    P+       
Sbjct: 1   MS-ESKQQYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWI---SV 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG    S  +VTH IP LSL+  ++ E+L  F+ R          ++  F  E
Sbjct: 57  DSPSQRVGGVALDSFRQVTHEIPMLSLDNAFSDEELESFLKRAQDRMPSAHIDA--FCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  +++ YE G  V AA RGDG +GE+++  +R I ++P  L     P  IEVRGE
Sbjct: 115 PKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIASVPLKLQGEGWPSRIEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V++ K  F  LND     G K + NPRNAA+G LR+L+     TR L F+ + +G    I
Sbjct: 175 VFMPKVGFEKLNDIARKKGEKVFVNPRNAAAGSLRQLDSKITATRPLAFYAYSVGVVEGI 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             +   Y+   +++  G P+    +  N    + ++Y ++ + R  LPY+IDG+V K+D+
Sbjct: 235 SLSSSHYQRFLQLKQWGLPMCPETKLVNGLESVKAFYADILNRRDALPYEIDGVVIKIDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             +Q++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  +
Sbjct: 295 IVIQEKLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            + VGD V+++RAG+VIP++V ++   R  D  P 
Sbjct: 355 SNATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVKERRKGDENPI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+C S V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG 
Sbjct: 404 VFPTSCPVCHSHVERIEGE------AVTRCSGGLVCQAQRKEALKHFVSRKALDVDGLGD 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+FTL      S   +  +   G  S  N+ +++N  +  
Sbjct: 458 KVIEQLVDKE----MVETPADLFTL------SAGVLTVLERMGPKSAQNIVNALNVAKET 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA+++ + +      +            LI VP +G+++
Sbjct: 508 TLARFLYSLGIREVGEATAANLARHFKTLEAIQTATH----------EQLIEVPDIGEVV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKA 666
           A+ I  F+   +N   V+AL+++        E    +   +  K +V TGTL ++ R  A
Sbjct: 558 ARHITAFFAEEKNQRVVQALIEQGIVWPPVEELGSEIPQPLAGKVVVLTGTLTQLSRGDA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  + +LGA V+  +S+KTDI+  G+  GSKL KAQ+LGV+I  E+  L LL
Sbjct: 618 KAALERLGAKVTGSVSKKTDIVFAGEAAGSKLTKAQELGVEIQTEQDLLALL 669


>gi|307261779|ref|ZP_07543445.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306868597|gb|EFN00408.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 676

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 252/708 (35%), Positives = 401/708 (56%), Gaps = 46/708 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   +   + P  ++
Sbjct: 10  AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 66

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ E+L  F+ R+  +  +    ++ F  EPK+DG  
Sbjct: 67  GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 125

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKND 197
           ++I Y  G    AA RGDG +GED+++ IR I  IP      N P  +EVRGEV++ +  
Sbjct: 126 VSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 185

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFAKGQ 254
           F  LN+  +  G K +ANPRNAA+G LR+L+P    +     N +  G+ ++ +      
Sbjct: 186 FETLNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTH 245

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 246 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 305

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 306 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 365

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 366 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 414

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 415 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 468

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L+       T +  +   G+ S  N  +SI K +N +L RF+
Sbjct: 469 MERE----LVHTPADLFKLE------HTTLMRLERMGEKSAQNALNSIEKAKNTTLARFL 518

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++ +                  +  L  V  VG+++A  IV 
Sbjct: 519 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 568

Query: 615 FYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+Q P N+  VE L+ +          +   + ++ K +V TGTL ++ R +A+  +   
Sbjct: 569 FWQEPHNVAVVEDLISQGVHWQNVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 628

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L  + 
Sbjct: 629 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIALTGEN 676


>gi|138893932|ref|YP_001124385.1| NAD-dependent DNA ligase LigA [Geobacillus thermodenitrificans
           NG80-2]
 gi|166215760|sp|A4IJY6|DNLJ_GEOTN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|134265445|gb|ABO65640.1| DNA ligase [Geobacillus thermodenitrificans NG80-2]
          Length = 670

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 258/717 (35%), Positives = 399/717 (55%), Gaps = 54/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +QA++  + L + ++ +   YY   +P + D+EYD L +   AI   +P+L  S   
Sbjct: 1   MDRQQAKRRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEKQYPELKTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IGG    +  KVTH +P +SL   +N  DLR F  R+      ++     +  E
Sbjct: 58  DSPTQRIGGPPLEAFRKVTHRVPMMSLANAFNEGDLRDFDRRVR-----QEVGEAAYVCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L+  +   +E RGE 
Sbjct: 113 LKIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLNEPVS--LEARGEA 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           ++ K  FL LN+E  A G + +ANPRNAA+G LR+L+P    +R L+ FV+GL    E+ 
Sbjct: 171 FMPKASFLRLNEERQARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELG 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     L  ++ LGF VN   R+  T   ++++ NE K  R  LPY+IDG+V KVD F+
Sbjct: 231 IESHSAALSYLQSLGFKVNPERRRCATIDEVIAFVNEWKEKRPQLPYEIDGIVIKVDSFA 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  A+SPRW I++KF  ++  T L+ I++ +GRTG +TP A LEPV + G  +  
Sbjct: 291 QQRQLGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGAVTPTAILEPVRVAGTTVQR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED+I+            +DIR+GD V++K+AG++IP+VV ++V+ R  D  PF+ 
Sbjct: 351 ATLHNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDEVPFTM 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  ERL HF SR A NIEGLG++ 
Sbjct: 400 PTHCPECESELVRLDGE------VALRCLNPK-CPAQLRERLIHFASRSAMNIEGLGEKV 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  +   AD++ L + Q         +   G+ S  NL  +I   +  SL
Sbjct: 453 VTQLFN----AGLVHDVADLYQLTKEQLVG------LERMGEKSAANLLAAIEASKQNSL 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR+VGA+ A+ LA+++ + +                   L+ VP +G+ +A 
Sbjct: 503 ERLLFGLGIRYVGAKAAQLLAEHFETMERLEAATK----------DELMAVPEIGEKMAD 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I  ++  P  +  +  L         +      E   SS +  K +V TG L  + R++
Sbjct: 553 SITTYFSQPEAVELLNELRTYGVNMAYKGRKRTAETPASSVLAGKTVVLTGKLASMSRNE 612

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+E + +LG  V+  +SR TDI+I G++ GSKL+KAQQLG++I +E +FL  + +  
Sbjct: 613 AKEQIERLGGRVTGSVSRSTDIVIAGEDAGSKLDKAQQLGIEIWDETRFLQEISREE 669


>gi|223041748|ref|ZP_03611941.1| DNA ligase [Actinobacillus minor 202]
 gi|223017432|gb|EEF15850.1| DNA ligase [Actinobacillus minor 202]
          Length = 680

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 258/706 (36%), Positives = 400/706 (56%), Gaps = 46/706 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+ +L  ++  ++  Y+    P++ D+EYD L      +    P+L     P+ P  ++G
Sbjct: 15  EIETLRNKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELI---TPDSPTQRVG 71

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      +VTH +P LSL+  ++ EDL  F+ R+  +       S+ F  EPK+DG  +
Sbjct: 72  AKPLDGFSQVTHELPMLSLDNAFSDEDLDGFLRRMESYISVAPS-SLAFCCEPKLDGLAV 130

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKNDF 198
           +I Y  G    AA RGDG +GED++A IR I  IP    + N P  +EVRGEV++ +  F
Sbjct: 131 SILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLKLKTDNPPLRLEVRGEVFMPQKGF 190

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF---FVHGLGKTSEIFAKGQY 255
            ALN + +  G K +ANPRNAA+G LR+L+P    +       +  G+  + +      +
Sbjct: 191 EALNQKALEKGEKTFANPRNAAAGSLRQLDPKITAQRPLMLNAYSIGIYDSDDELPSTHF 250

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ ++ LG PVNN +R       ++ +Y ++++ R TL YDIDG V KV++ +LQ+QL
Sbjct: 251 ERLQWLKSLGIPVNNEIRLEKGRENLLKFYADIQTKRPTLGYDIDGTVLKVNDIALQEQL 310

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLHN
Sbjct: 311 GFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHN 370

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L            I +GD V+++RAG+VIP+++ I+   R  +A+  +FP+ CP
Sbjct: 371 GDEIERL-----------GIAIGDTVIIRRAGDVIPQIIGIVAERRPKNAKKITFPTACP 419

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           IC S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++   
Sbjct: 420 ICGSAVVRVEGE------AVARCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLIEQLM 473

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           + E     +  PAD+F L +        +  +   G+ S  N  +SI K +N +L RF+F
Sbjct: 474 ERE----LVHTPADLFKLDQ------VTLMRLERMGEKSAQNALNSIEKAKNTTLPRFLF 523

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   A +LA ++ S                  +  L  V  VG+++A  IV F
Sbjct: 524 ALGIRDVGEATALNLANHFGSLDAIRAAT----------FEQLQEVQDVGEVVANRIVRF 573

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +Q P N+  VE L+++        +  +  + +++K +V TGTL  + R +A+  +  LG
Sbjct: 574 WQEPHNVEVVEDLIQQGVVWQNIEQVEIADNPLKDKNVVLTGTLSVLTRDQAKALLQGLG 633

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             VS  +S KTD +I G+  GSKL KAQ+LGVK+++E+ FL ++ Q
Sbjct: 634 CKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLSEQDFLAIVGQ 679


>gi|219870289|ref|YP_002474664.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis SH0165]
 gi|254781340|sp|B8F314|DNLJ_HAEPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219690493|gb|ACL31716.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis SH0165]
          Length = 675

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 255/705 (36%), Positives = 404/705 (57%), Gaps = 46/705 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
               +L  L +++  ++  Y+    P++ D+EYD L      +    P+L  S   + P 
Sbjct: 4   SIETQLEHLREKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELITS---DSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +      ++TH IP LSL+  ++ +DL  F+ RI       + N I F  EPK+D
Sbjct: 61  QRVGAKPLDGFAQITHEIPMLSLDNAFSDDDLTGFLRRIEDRIA-INSNQIEFCCEPKLD 119

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYIS 194
           G  ++I Y  G    AA RGDG +GED++A IR I  IP    + N P  +EVRGEV++ 
Sbjct: 120 GLAVSILYVDGVLTQAATRGDGTTGEDITANIRTIRNIPLKLKTNNPPHRLEVRGEVFMP 179

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF---FVHGLGKTSEIFA 251
           +  F  LN++ +A G K +ANPRNAA+G LR+L+P   ++       +  G+ ++ +   
Sbjct: 180 QQGFEQLNEKALAKGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYNIGVYESDDELP 239

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              ++ LQ ++ LG PVN  +  A     + ++Y ++++ RS+L YDIDG V KV+E +L
Sbjct: 240 TTHFDRLQWLKTLGIPVNAEITLATGSQALTAFYQKIQAKRSSLGYDIDGTVLKVNEITL 299

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NA
Sbjct: 300 QEQLGFISKAPRWAIAYKFPAQEEMTILNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNA 359

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            I +GD V+++RAG+VIP++V ++   R  +A+  +FP
Sbjct: 360 TLHNGDEIERL-----------GIAIGDTVIIRRAGDVIPQIVGVVAERRPDNAKKIAFP 408

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ +
Sbjct: 409 TACPVCNSAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLI 462

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   + E     I  PAD+F L        T +  +   G+ S  N   SI K +N +L 
Sbjct: 463 EQLMERE----LIHTPADLFKL------DHTTLMRLDRMGEKSANNALQSIEKAKNTTLA 512

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF+F+LGIR VG   A++LA ++ +     Q           D  +L +V  VG+++A  
Sbjct: 513 RFLFALGIRDVGESTAQNLANHFGTLDAIRQA----------DLDTLKQVQDVGEVVANR 562

Query: 612 IVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           + +F+Q P N+  VE L+ +         ++   + +++K +V TGTL ++ R +A+  +
Sbjct: 563 LFQFWQEPHNVEVVEDLIAQGVTWQDVVPQEIADNPLKDKTVVLTGTLTQLTRDQAKALL 622

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            QLG  VS  +S KTD +I G+  GSKL KAQ+LGVKI++E++ +
Sbjct: 623 QQLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILSEDELI 667


>gi|121604718|ref|YP_982047.1| DNA ligase [Polaromonas naphthalenivorans CJ2]
 gi|166216226|sp|A1VN98|DNLJ_POLNA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120593687|gb|ABM37126.1| DNA ligase, NAD-dependent [Polaromonas naphthalenivorans CJ2]
          Length = 707

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 257/724 (35%), Positives = 393/724 (54%), Gaps = 56/724 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +      + +++L  E+  H   YY   +P I D+EYD L +   A+  A P+L     P
Sbjct: 15  MPPASVIERIAALRAELDLHAHRYYVLDEPSIPDAEYDRLFKELQALEAAHPELL---TP 71

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKD-DNSIFF 128
           + P  ++GG+       V H IP LS+    + E    R F TR+ +    K+ D  + +
Sbjct: 72  DSPTQRVGGKPLGQFASVRHRIPMLSIRTETDTEATGARNFDTRVRKELGLKESDPPVEY 131

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E K DG  +++RYE G  V AA RGDG  GEDV+  IR I  IP  L  + P ++EVR
Sbjct: 132 VAELKFDGLAMSLRYENGVLVQAATRGDGEVGEDVTQNIRTIRQIPLRLPADAPPVMEVR 191

Query: 189 GEVYISKNDFLALNDEMIAV------GRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
           GEVY+ +++F ALN+           G K + NPRNAA+G +R+L+P     R L+FF +
Sbjct: 192 GEVYMRRDEFEALNERQREKIAKGAKGEKTFVNPRNAAAGGVRQLDPAFAAERRLSFFAY 251

Query: 242 GLGKTSEIF-----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
           G+G+ +         +  +E+LQ ++   FPV    R A     +++++  +   R  LP
Sbjct: 252 GVGEITPPEEGGPVFETHFELLQTLKSWCFPVAAQTRLAYGAPELIAFHEAIGRQRDQLP 311

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           YDIDG+VYKV+  +LQ+++G  +R PRW ++HK+  ++  T +L IDIQ+GRTG LTPVA
Sbjct: 312 YDIDGVVYKVNSLALQRKMGFVSREPRWAVAHKYPAQEQLTTVLAIDIQVGRTGKLTPVA 371

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
           +L PV +GG  +TNATLHNED  +            +D+RVGD V+V+RAG+VIP+VV +
Sbjct: 372 KLAPVFVGGVTVTNATLHNEDEARR-----------KDVRVGDTVIVRRAGDVIPEVVSV 420

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           ++++R  DA  FS P  CP+C S  VR+         A +RCTGGL C+AQ+ E + H+ 
Sbjct: 421 LLDKRVQDAPQFSMPRQCPVCGSDAVREEGE------ADYRCTGGLFCAAQRKEAILHYA 474

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
            + A  IEGLG + ++    +      IR   D++ L        T + ++    + S +
Sbjct: 475 HKRAVEIEGLGDKLVEQLVDT----GVIRTLPDLYRL------GFTSLASLDRMAEKSAS 524

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL  ++ K +  +L RF+F LGIRHVG   A++LA+++    +                 
Sbjct: 525 NLVAALEKSKQTTLPRFVFGLGIRHVGEATAKALARHFGQLDSIMDASE----------E 574

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFT 655
            L+ V  VG I+A++I  F++ P N   VE L    V+   G         +  K  V T
Sbjct: 575 QLLEVADVGPIVAKSIRTFFEQPHNREVVEQLRACGVTWEEGAPAAVAPKPLSGKTFVIT 634

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R  A++ +   G  V+  +S+KTD ++ G + GSKL KA+ LGV +++E   L
Sbjct: 635 GTLPGLSRDDAKDRIEAAGGKVAGSVSKKTDYVVAGLDAGSKLVKAEALGVAVIDEATLL 694

Query: 716 FLLQ 719
            LL 
Sbjct: 695 ALLD 698


>gi|119774653|ref|YP_927393.1| DNA ligase (NAD(+)) [Shewanella amazonensis SB2B]
 gi|166216239|sp|A1S5R7|DNLJ_SHEAM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119767153|gb|ABL99723.1| DNA ligase (NAD(+)) [Shewanella amazonensis SB2B]
          Length = 681

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 244/715 (34%), Positives = 382/715 (53%), Gaps = 54/715 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +I Q + E+  L  EI+ H+  YY    P I D+EYD L  +  A+   +P  A   +P+
Sbjct: 10  TIMQVKAEIQRLTAEINRHNIAYYVQDAPSIPDAEYDRLMNQLKALEAEYPQFA---EPD 66

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG       +V+H  P LSL+  +N ED   F  R+      +      +  EP
Sbjct: 67  SPTQRVGGAALNKFEQVSHLKPMLSLDNAFNEEDFVAFDKRLTDKVGSQV-----YCAEP 121

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191
           K+DG  +++ Y  G    AA RGDG  GED+S  +R I ++P  L  +  P ++EVRGEV
Sbjct: 122 KLDGLAVSLIYRNGVLERAATRGDGAVGEDISVNMRTIKSVPLRLQGDDIPALVEVRGEV 181

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ +  F ALND   A G K + NPRNAA+G LR+L+      R L F+ + LG   +  
Sbjct: 182 FMPRAAFEALNDRARAKGDKLFVNPRNAAAGSLRQLDSKITAERSLAFYAYALGVVQDDN 241

Query: 251 ------AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                 A      L+++   G PV+  V+       +++YY ++   R  L ++IDG+V 
Sbjct: 242 GADLVLAPTHKGQLERLTAFGLPVSKEVKLCEGLAEVMAYYADILKRRDELAFEIDGVVI 301

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++   Q+QLG  AR+PRW I+ KF  ++  T L  +D Q+GRTG +TPVARL+PV +G
Sbjct: 302 KVNDIEAQQQLGFVARAPRWAIAFKFPAQEEMTVLEGVDFQVGRTGAVTPVARLKPVFVG 361

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D I  L            +++GD V+++RAG+VIP++V ++   R  +
Sbjct: 362 GVTVSNATLHNGDEIARL-----------GVKIGDTVIIRRAGDVIPQIVAVVPERRPDE 410

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           AQ   FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A  I+
Sbjct: 411 AQDILFPDNCPVCGSLVERIEGE------AVARCSGGLFCEAQRREAIKHFASRKAMYID 464

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + ++     E     +  PAD+F L      + +K+  +   G  S TNL  +I +
Sbjct: 465 GMGDKVVEQLIDKE----LVESPADLFKL------NVSKLTMLERMGTKSATNLVAAIEE 514

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L +F+++LGIR VG   A +LAK++ S +               D  +LI+V  V
Sbjct: 515 AKTTTLPKFLYALGIREVGEATAANLAKHFRSLEAIRDA----------DVDALIQVEDV 564

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQR 663
           G ++AQ +  F+  P N+  ++AL+          + +     +  +  V TGTL  + R
Sbjct: 565 GTVVAQHVAHFFAQPHNLEVIDALIAAGVNWPAIEKPSADAQPLLGQTWVLTGTLTSLGR 624

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +A+  +  LGA V+  +S+ T  ++ G+  GSKL KAQ+LG+ +++E   + L+
Sbjct: 625 TEAKAKLEALGAKVAGSVSKNTHCVVAGEAAGSKLAKAQELGIPVLDEAGLIELI 679


>gi|326390897|ref|ZP_08212448.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus JW 200]
 gi|325993045|gb|EGD51486.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus JW 200]
          Length = 662

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 241/707 (34%), Positives = 381/707 (53%), Gaps = 49/707 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L ++I+YH+  YY   +P I D EYD L R    +   +P+      P+ P  +
Sbjct: 4   KERVKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEFK---TPDSPSQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE        TH +P LSL   ++  +LR F  R+           + + +E KIDG 
Sbjct: 61  VGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRVREAVG-----DVEYVVELKIDGL 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G F   + RGDG  GE+V+  ++ I +IP  L  ++   + VRGEV++ +  
Sbjct: 116 SVELIYENGIFTVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDVS--LVVRGEVFMPRTS 173

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E   +G   +ANPRNAA+G LR+L+P     R L+ F+  L K      K   E
Sbjct: 174 FEKLNEEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEGRKFKTHIE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ ++  GF V    ++ +    ++    E++++R  LPYDIDG V KV++   ++ LG
Sbjct: 234 TLEFLKEQGFKVIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNDLEKREILG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           + A+ PRW I+ K+  ++  T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE
Sbjct: 294 QTAKDPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVPISGSVVSRATLHNE 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYIK            +DIR+GD V+V++AGE+IP+VV+++  ER    + F  P  CP 
Sbjct: 354 DYIK-----------EKDIRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  VR          A  RCTG L C AQ L  + HF S+DA +IEGLG   ++    
Sbjct: 403 CGALAVRLPGE------AIRRCTG-LNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLS 455

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   AD++ L+            +   GD SV NL ++I + +   L+R +F 
Sbjct: 456 K----GLIHNIADLYYLKYEDLI------QLERMGDKSVKNLLNAIEESKTRDLDRLLFG 505

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G++ A+ +A+++ +  N  +            +     +P +G  +A++IV F+
Sbjct: 506 LGINLIGSKAAQVIAEHFKTMDNIMKA----------KFEDFTHLPDIGPKMARSIVSFF 555

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +N+  +E L           +  VS+  E K  V TG L+   R +A   + + G  
Sbjct: 556 AEKQNVEIIEKLKNAGVNMKKLSKGKVSNIFEGKTFVLTGALENYTREEATRMIEERGGK 615

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           V+  +S+KTD I+VG +PGSKL+KAQ+LG+KI++E+QF  +L+  N 
Sbjct: 616 VTNSVSKKTDYILVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGENI 662


>gi|167855687|ref|ZP_02478444.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis 29755]
 gi|167853205|gb|EDS24462.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis 29755]
          Length = 675

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 255/704 (36%), Positives = 404/704 (57%), Gaps = 46/704 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              +L  L +++  ++  Y+    P++ D+EYD L      +    P+L  S   + P  
Sbjct: 5   IETQLEHLREKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELITS---DSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G +      ++TH IP LSL+  ++ +DL  F+ RI       + N I F  EPK+DG
Sbjct: 62  RVGAKPLDGFAQITHEIPMLSLDNAFSDDDLIGFLRRIEDRIA-INSNQIEFCCEPKLDG 120

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISK 195
             ++I Y  G    AA RGDG +GED++A IR I  IP    + N P  +EVRGEV++ +
Sbjct: 121 LAVSILYVDGVLTQAATRGDGTTGEDITANIRTIRNIPLKLKTNNPPHRLEVRGEVFMPQ 180

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF---FVHGLGKTSEIFAK 252
             F  LN++ +A G K +ANPRNAA+G LR+L+P   ++       +  G+ ++ +    
Sbjct: 181 QGFEQLNEKALAKGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYNIGVYESDDELPT 240

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             ++ LQ ++ LG PVN  +  A     + ++Y ++++ RS+L YDIDG V KV+E +LQ
Sbjct: 241 THFDRLQWLKTLGIPVNAEITLATGSQALTAFYQKIQAKRSSLGYDIDGTVLKVNEITLQ 300

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NAT
Sbjct: 301 EQLGFISKAPRWAIAYKFPAQEEMTILNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNAT 360

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+ L            I +GD V+++RAG+VIP++V ++   R  +A+  +FP+
Sbjct: 361 LHNGDEIERL-----------GIAIGDTVIIRRAGDVIPQIVGVVAERRPDNAKKIAFPT 409

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++
Sbjct: 410 ACPVCNSAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIE 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              + E     I  PAD+F L        T +  +   G+ S  N   SI K +N +L R
Sbjct: 464 QLMERE----LIHTPADLFKL------DHTTLMRLERMGEKSANNALQSIEKAKNTTLAR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+F+LGIR VG   A++LA ++ +     Q           D  +L +V  VG+++A  +
Sbjct: 514 FLFALGIRDVGESTAQNLANHFGTLDAIRQA----------DLDTLKQVQDVGEVVANRL 563

Query: 613 VEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F+Q P N+  VE L+ +         ++   + +++K +V TGTL ++ R +A+  + 
Sbjct: 564 FQFWQEPHNVEVVEDLIAQGVKWQDVVPQEIADNPLKDKTVVLTGTLTQLTRDQAKALLQ 623

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           QLG  VS  +S KTD +I G+  GSKL KAQ+LGVKI++E++ +
Sbjct: 624 QLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILSEDELI 667


>gi|90021526|ref|YP_527353.1| DNA ligase (NAD+) [Saccharophagus degradans 2-40]
 gi|123090491|sp|Q21JI8|DNLJ_SACD2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|89951126|gb|ABD81141.1| DNA ligase, NAD-dependent [Saccharophagus degradans 2-40]
          Length = 674

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 256/711 (36%), Positives = 391/711 (54%), Gaps = 45/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +    +L SL+ +I+YH+  YY    P + D+EYD L +   AI   FP+L      + P
Sbjct: 5   DAVLDKLESLKNQINYHNKLYYVLDAPELPDAEYDKLFQELQAIEQQFPELV---TEDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G     S   + H  P LSL+ ++N+E+L  F  RI        D S+ ++ EPK 
Sbjct: 62  TQRVGAAPLDSFASIEHKRPMLSLDNVFNVEELFAFDKRIRDRIN--ADASLEYSCEPKF 119

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193
           DG   ++ YE G+   AA RGDG  GED++  +R I ++P  L  N  P ++EVRGEVY+
Sbjct: 120 DGIAASLLYENGRLKTAATRGDGTVGEDITQNMRTIGSVPLKLEGNNIPAVLEVRGEVYM 179

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFA 251
            K  FL +N+E +A   K + NPRNAA+G LR+LNP     R L F  + +G        
Sbjct: 180 PKAGFLRINEEALAKNEKTFVNPRNAAAGSLRQLNPQITAKRPLVFCAYNVGVVEGGELP 239

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              YE L ++   GF V+   R A       +YY+ +++ R +L YDIDG+V+KV+ F L
Sbjct: 240 ATHYETLTQLFEWGFLVSEERRIAKGIEECEAYYHYLEAKRESLAYDIDGIVFKVNAFDL 299

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I+HKF  ++A T L D++ Q+GRTG +TPVA+L+P+ +GG  ++NA
Sbjct: 300 QERLGFVSRAPRWAIAHKFPAQEALTVLHDVEFQVGRTGAITPVAKLQPIFVGGVTVSNA 359

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D I+ L            IRVGD V+V+RAG+VIP++V I+ ++R  DA+   FP
Sbjct: 360 TLHNKDEIERL-----------GIRVGDTVIVRRAGDVIPQIVSIVESKRPQDAREIKFP 408

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S V            AA RCTGGL C AQ+ E +KHF SR A +I+GLG + +
Sbjct: 409 TACPVCGSDVESVEGE------AAIRCTGGLVCEAQRKESIKHFASRQAMDIDGLGDKIV 462

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D    ++     +   AD++TL          +  +   G  S  NL  +I   +  SL+
Sbjct: 463 DQLVDNK----LVNDVADLYTL------DIPTLAGLERLGAKSAANLVAAIEASKQTSLD 512

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +++LGIR VG   AR+LA ++ +                     LI V  VG ++A  
Sbjct: 513 KILYALGIREVGRATARNLANHFCTLNKVMDATQ----------EQLIEVTDVGPVVAHY 562

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +V+F+    N   +E L+          + +    +E    V TG+L+ + R +A++ + 
Sbjct: 563 VVDFFAQANNREVIEKLIAAGVNWPDIEKVDGVKPLEGTTYVLTGSLESLSRDEAKDKLQ 622

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA VS  +S KT  ++ G   GSKL KA++LG+ I++E   L LL+++ 
Sbjct: 623 ALGAKVSGSVSAKTTCVVAGPGAGSKLAKAEKLGLAILDEVGLLALLEEHG 673


>gi|91788454|ref|YP_549406.1| DNA ligase [Polaromonas sp. JS666]
 gi|123164833|sp|Q12AD4|DNLJ_POLSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91697679|gb|ABE44508.1| DNA ligase, NAD-dependent [Polaromonas sp. JS666]
          Length = 706

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 260/741 (35%), Positives = 391/741 (52%), Gaps = 62/741 (8%)

Query: 1   MKKRQLIPIEALSIEQA--RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
           M  + L      S + A   + +++L  E+  H   YY   +P I DSEYD L +    +
Sbjct: 1   MATKDLFAQPEPSRQPASPAERMAALRAELHAHAHRYYVLDEPTIPDSEYDRLFKELQDL 60

Query: 59  AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYR 116
             A+P+L     P+ P  ++GG+       V H +P LS+    + E    + F TR+ +
Sbjct: 61  EAAYPELL---TPDSPTQRVGGKPLDQFASVRHKVPMLSIRTETDTEATGAQNFDTRVRK 117

Query: 117 FWQKKD-DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175
                + +  + +  E K DG  +++RYE G  V AA RGDG  GE+V+  IR I  IP 
Sbjct: 118 ELGLTESNPPVEYVAELKFDGLAMSLRYEHGVLVQAATRGDGEVGEEVTQNIRTIRQIPL 177

Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV------GRKPYANPRNAASGILRRLNP 229
            L  + P ++EVRGEVY+ + DF ALND+          G K + NPRNAA+G +R+L+P
Sbjct: 178 KLPSDAPPVLEVRGEVYMRRADFEALNDKQREKIAAGAKGEKTFVNPRNAAAGAVRQLDP 237

Query: 230 TDI-TRYLNFFVHGLG---------KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFH 279
                R L+FF +G+G              +     E+LQ ++  GFPV    + A+   
Sbjct: 238 AIAAQRPLSFFAYGVGEVVLEAEQANPKNPWVATHMELLQALKSWGFPVAAQTKIAHGAS 297

Query: 280 GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRL 339
            +++++  M   R +LPYDIDG+VYKV+  +LQKQ+G  +R PRW ++HK+  ++  T +
Sbjct: 298 ELIAFHQAMGQQRDSLPYDIDGVVYKVNSLALQKQMGFVSREPRWAVAHKYPAQEQLTTV 357

Query: 340 LDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGD 399
           L I++Q+GRTG LTPVA+L PV +GG  +TNATLHNED  +            +D+RVGD
Sbjct: 358 LGIEVQVGRTGKLTPVAKLAPVFVGGVTVTNATLHNEDEARR-----------KDVRVGD 406

Query: 400 RVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT 459
            V+V+RAG+VIP+VV ++ ++R P A  F+ P  CP+C S  VR+         A +RCT
Sbjct: 407 TVIVRRAGDVIPEVVSVLPDKRLPGAPMFTMPRQCPVCGSDAVREEGE------ADYRCT 460

Query: 460 GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT 519
           GGL C AQ+ E + H+  R A  IEGLG + ++        A  IR   D++ L      
Sbjct: 461 GGLFCGAQRKEAILHYAHRRAVEIEGLGDKLVEQLVD----ANVIRTLPDLYKL------ 510

Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579
             T + ++    + S  NL  ++ K +  +L RF+F LGIRHVG   A+ LA+++ +   
Sbjct: 511 GLTALASLDRMAEKSANNLLKALEKSKQTTLPRFLFGLGIRHVGEATAKELARHFGNLDA 570

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGR 638
                             L+ V  VG I+AQ+I  F+  P N   VE L         G 
Sbjct: 571 IMDATQ----------EQLLAVSDVGSIVAQSIRTFFDQPHNREVVEQLRACGVHWEEGE 620

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
                   +  K  V TGTL  + R +A++ V   G  V+  +S+KTD ++ G   GSKL
Sbjct: 621 PAAVAPKPLSGKTFVITGTLPTLSRDEAKDKVEAAGGKVAGSVSKKTDYVVAGTEAGSKL 680

Query: 699 EKAQQLGVKIMNEEQFLFLLQ 719
            KAQ+LG+ +++E   + LL 
Sbjct: 681 VKAQELGIAVIDEAALMRLLA 701


>gi|24374425|ref|NP_718468.1| DNA ligase, NAD-dependent [Shewanella oneidensis MR-1]
 gi|81460839|sp|Q8ED70|DNLJ_SHEON RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|24348997|gb|AAN55912.1|AE015728_1 DNA ligase, NAD-dependent [Shewanella oneidensis MR-1]
          Length = 689

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 246/713 (34%), Positives = 387/713 (54%), Gaps = 51/713 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + + A+  + +L Q ++ H+  YY    P I DSEYD L ++   +   +P    +   +
Sbjct: 19  TPQTAQPLMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQQLKKLEAEYPQFVLA---D 75

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F  EP
Sbjct: 76  SPTQRVGGLALAKFEQITHLKPMLSLDNAFDEADFTAFHKRVSDRVG-----QVSFCCEP 130

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEV 191
           K+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVRGE 
Sbjct: 131 KLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLRLRGNNYPELVEVRGEA 190

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS--- 247
           ++ K  F ALN+       K + NPRNAA+G LR+L+     +R L+F+ + LG      
Sbjct: 191 FMPKAAFEALNERARLKDDKQFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPSS 250

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              AK  YE LQ+++  G PV++ ++  +  + + +YY ++ + RS LP++IDG+V KV+
Sbjct: 251 HELAKTHYEQLQQLKSWGLPVSSEIKVCDELNQVFAYYKDILTRRSDLPFEIDGVVMKVN 310

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q+ LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG  
Sbjct: 311 DIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVT 370

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN D I+ L            + VGD V+++RAG+VIP++V I+   R  DAQ 
Sbjct: 371 VSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRSEDAQA 419

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+G+G
Sbjct: 420 IVFPQHCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDIDGMG 473

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++     E     ++ PAD+F L        + +  +   G  S TNL  +I   + 
Sbjct: 474 DKIVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGMKSATNLALAIEAAKT 523

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RF+++LGIR VG   A +LA ++ S                     LI V  +G++
Sbjct: 524 TTLPRFLYALGIREVGEATAANLAAHFGSLDALRIAT----------IEQLIEVEDIGEV 573

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKA 666
           +AQ +  F+  P N+  ++AL+            +     ++ +  V TGTL ++ R+ A
Sbjct: 574 VAQHVAHFFAQPHNLEVIDALIAAGVNWPAIEAPSADEQPLKGQTWVLTGTLNQLNRNDA 633

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK++ E++ L LL 
Sbjct: 634 KAQLQVLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 686


>gi|226310273|ref|YP_002770167.1| NAD-dependent DNA ligase [Brevibacillus brevis NBRC 100599]
 gi|254781268|sp|C0Z4D6|DNLJ_BREBN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226093221|dbj|BAH41663.1| NAD-dependent DNA ligase [Brevibacillus brevis NBRC 100599]
          Length = 671

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 243/712 (34%), Positives = 384/712 (53%), Gaps = 48/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A  ++  L + I  H+  Y++  +P I D EYD L R    +  +FPDL   + P
Sbjct: 1   MDRLTAETKIKELAKRIERHNRLYHEEDRPEISDQEYDQLMRELRELETSFPDL---QSP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE      KV H  P LSL   +N ED+R F  R+ +        ++ +  E
Sbjct: 58  DSPSLRVGGEPLPFFEKVVHKTPMLSLGNAFNEEDIRDFDRRVRQAVG---SQAVRYVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE G FV  A RGDG +GED++  ++ I +IP  L L  P  +EVRGE 
Sbjct: 115 LKIDGLAVSLHYENGLFVRGATRGDGTTGEDITQNLKTIRSIP--LRLTKPLTLEVRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+SK  F  LN E    G   +ANPRN+A+G LR+L+P    +R L+ F++G+G      
Sbjct: 173 YMSKGAFEKLNKEREERGEALFANPRNSAAGSLRQLDPKIAASRQLDTFIYGIGDLQGET 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   E L  +  LGF VN   R  +    ++++       R  LPY+IDG+V KVD ++
Sbjct: 233 VESHSEGLDLLETLGFMVNQERRVFDDVDELLAFIAGWTEKRPHLPYEIDGMVIKVDSYA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++A T L  I++ +GRTG +TP A L+PV++ G  +  
Sbjct: 293 QQEELGFTAKSPRWAIAYKFPAEEAVTILEGIEVSVGRTGNVTPTALLKPVSLAGTTVKR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            + + +GD V+VK+AG++IP+++ ++   R  +  PF+ 
Sbjct: 353 ASLHNEDIIR-----------EKGLLIGDHVVVKKAGDIIPEIIAVLPERRTGNEVPFAM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC   + C A   E + HFVSR A NI+GLG++ 
Sbjct: 402 PTHCPECGSELVRLEEE------VALRCINPM-CPALIREGMIHFVSRTAMNIDGLGEKV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   ++       I   AD++ L +++      +  +   G+ SV NL  +I   +  SL
Sbjct: 455 VAQLYRD----GIIHSVADLYYLHQQRD----ALLGLERMGEKSVDNLLAAIEASKENSL 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR VGA+ AR LA+++ +     Q               + ++  +G  +A 
Sbjct: 507 ERVLFGLGIRLVGAKAARVLAEHFGNIDTIMQASE----------EEITQIDEIGPKMAA 556

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           ++V ++  P+    +E L         +    E         K +V TGTL ++ R +A+
Sbjct: 557 SLVNYFAQPQAQAVIERLRAAGVNMEYKGIRIESGADLPFSGKTIVLTGTLTQMSRQEAE 616

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E + +LG  V+  +S+KTD++I G+  GSKLEKA++LGV +M+E  FL +L+
Sbjct: 617 EAIARLGGKVTGSVSKKTDLVIAGEKAGSKLEKAEKLGVAVMDEAGFLQVLE 668


>gi|56418811|ref|YP_146129.1| NAD-dependent DNA ligase LigA [Geobacillus kaustophilus HTA426]
 gi|81348272|sp|Q5L3B9|DNLJ_GEOKA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56378653|dbj|BAD74561.1| DNA ligase (polydeoxyribonucleotide synthase[NAD+]) [Geobacillus
           kaustophilus HTA426]
          Length = 670

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 259/717 (36%), Positives = 397/717 (55%), Gaps = 54/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +QA +  + L + +  +   YY   +P + D+EYD L +   AI   +P+L  S   
Sbjct: 1   MDRQQAERRAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELMAIEEQYPELKTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IGG    +  KVTH +P +SL   ++  DLR F  R+      ++     +  E
Sbjct: 58  DSPTQRIGGPPLEAFRKVTHVVPMMSLANAFDEGDLRDFDRRVR-----QEVGEAAYVCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  +R I ++P  L   +   +E RGE 
Sbjct: 113 LKIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLRTIRSLPLRLKEPVS--LEARGEA 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           ++ K  FL LN+E  A G + +ANPRNAA+G LR+L+P    +R L+ FV+GL    E+ 
Sbjct: 171 FMPKASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELG 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   E L  ++ LGF VN   R+      ++++ NE    R  LPY+IDG+V KVD F+
Sbjct: 231 IESHSEALDYLQALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFA 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T L+ I++ +GRTG++TP A LEPV + G  +  
Sbjct: 291 QQRELGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED+I+            +DIR+GD V++K+AG++IP+VV ++V+ R  D  PF+ 
Sbjct: 351 ATLHNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFAM 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  ERL HF SR A NIEGLG++ 
Sbjct: 400 PTHCPECESELVRLEGE------VALRCLNP-NCPAQLRERLIHFASRAAMNIEGLGEKV 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  +R  AD++ L + Q         +   G+ S TNL  +I   +  SL
Sbjct: 453 VTQLFN----AGLVRDVADLYRLTKEQLIG------LERMGEKSATNLLAAIEASKQNSL 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR+VGA+ A+ LA+++ + +   +               L+ VP +G+ +A 
Sbjct: 503 ERLLFGLGIRYVGAKAAQLLAEHFETMERLERATK----------EELMAVPEIGEKMAD 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           AI  F+  P     ++ L         +      E    S    K +V TG L  + R++
Sbjct: 553 AITAFFAQPEATELLQELRAYGVNMAYKGPKRSAEAPADSAFAGKTVVLTGKLASMSRNE 612

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+E + +LG  V+  +SR TD++I G++ GSKLEKAQQLG++I +E +FL  + +  
Sbjct: 613 AKEEIERLGGRVTGSVSRSTDLVIAGEDAGSKLEKAQQLGIEIWDESRFLQEINRGK 669


>gi|307248328|ref|ZP_07530352.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|306855149|gb|EFM87328.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 682

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 253/708 (35%), Positives = 401/708 (56%), Gaps = 46/708 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   +   + P  ++
Sbjct: 16  AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ E+L  F+ R+  +  +    ++ F  EPK+DG  
Sbjct: 73  GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKND 197
           ++I Y  G    AA RGDG +GED+++ IR I  IP      N P  +EVRGEV++ +  
Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 191

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFAKGQ 254
           F ALN+  +  G K +ANPRNAA+G LR+L+P    +     N +  G+ ++ +      
Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L        T +  +   G+ S  N  +SI K +N +L RF+
Sbjct: 475 MECE----LVHTPADLFKL------DHTTLMRLERMGEKSAQNALNSIEKAKNTTLARFL 524

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++ +                  +  L  V  VG+++A  IV 
Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574

Query: 615 FYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+Q P N+  VE L+ +          +   + ++ K +V TGTL ++ R +A+  +   
Sbjct: 575 FWQEPHNVAVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L  + 
Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIALTGEN 682


>gi|310768269|gb|ADP13219.1| NAD-dependent DNA ligase LigA [Erwinia sp. Ejp617]
          Length = 670

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 239/714 (33%), Positives = 397/714 (55%), Gaps = 51/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  + +++ L   + +++  Y+    P + D+EYD L      +    P+L  S   + 
Sbjct: 1   MESVQDKITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRELEAQHPELLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G        +V H +P LSL+  ++ E    F  R+    +  DD  I F  E K
Sbjct: 58  PTQRVGAAPLSVFEQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDD--ITFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YEKG+ V AA RGDG +GE+++A +R I  IP  LS +  PE +EVRGEV+
Sbjct: 116 LDGLAVSLLYEKGELVRAATRGDGTTGENITANVRTIRAIPLRLSGDNIPERLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           +    F  +N++  + G+K +ANPRNAA+G LR+L+P     R L FF +GLG       
Sbjct: 176 MPLVGFEQMNEQARSSGQKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     LQ+ +  G PV++ VR  ++   ++ +Y+++++ R TL +DIDG+V KVD  +
Sbjct: 236 PRSHRARLQRFKAWGLPVSDRVRLCHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVLVAGVMVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GDRV+++RAG+VIP+V+ ++      +A+  +F
Sbjct: 356 ATLHNADEIERL-----------GLKIGDRVVIRRAGDVIPQVMSVVETG--DNAREIAF 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R             RCTGGL C AQ+   LKHFVSR A +I+G+G++ 
Sbjct: 403 PTRCPVCGSDVERVEGE------VVARCTGGLICGAQRKGALKHFVSRRALDIDGMGEKI 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D     E     ++ PA++F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 457 IDQLVDKE----YVKNPAELFELTA------GKLTGLDRMGPKSAQNVVNALVKAKQTTF 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGI  VG   A +LA ++ +                 D  +L+ V  VG ++A 
Sbjct: 507 ARFLYALGISEVGEATAANLAAHFGTLDALMAA----------DLDALMAVQDVGKVVAS 556

Query: 611 AIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F     N   +  L+ +   +    +    + + S    K +V TG+L  + R +A
Sbjct: 557 HVRNFLDEESNREIIRLLVDKAGVNWPQVMVVKAEEIDSPFAGKTVVLTGSLSILSRDEA 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ +  LGA VS  +S+KTD++I G+  GSKL KA++LG+ +++E++ + LL +
Sbjct: 617 KDRLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKARELGIDVIDEQEMIRLLGE 670


>gi|94310370|ref|YP_583580.1| DNA ligase, NAD-dependent [Cupriavidus metallidurans CH34]
 gi|123383876|sp|Q1LNG5|DNLJ_RALME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|93354222|gb|ABF08311.1| DNA ligase, NAD(+)-dependent [Cupriavidus metallidurans CH34]
          Length = 721

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 261/749 (34%), Positives = 380/749 (50%), Gaps = 74/749 (9%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
            A S +   +    L +E+  +   YY    P I D++YDAL     A+    P+L    
Sbjct: 13  SAPSGDSPAERAQWLREELERYSYQYYVLDAPTIPDADYDALFIELQALEAEHPELL--- 69

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS---- 125
            P+ P  ++GG    +   V H +P LSL   +  ED+  F  R  +   +    +    
Sbjct: 70  TPDSPTQRVGGAPLSAFDSVRHRVPMLSLNNGFEDEDVINFDRRCAQGLGRATAAAPAAF 129

Query: 126 ---------------------------IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
                                      + +  E K DG  +++RYE G  V AA RGDG 
Sbjct: 130 ATPAAPADDLFSAADAAEAAANTAGNAVEYACELKFDGLAMSLRYENGTLVQAATRGDGE 189

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDV+A +R I  IP  L    P ++EVRGEV++ + DF  LN      G K + NPRN
Sbjct: 190 TGEDVTANVRTIKAIPLKLRGTAPSVLEVRGEVFMYRADFDKLNARQAESGEKTFVNPRN 249

Query: 219 AASGILRRLNPT-DITRYLNFFVHGLG-KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQAN 276
           AA+G LR+L+P     R L+FF +G+G             ML     LG PV +  R   
Sbjct: 250 AAAGSLRQLDPRITAKRPLSFFAYGVGEMEGFDRPGTHSAMLDGFAKLGLPVCDERRVVR 309

Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336
              G++S++ E+   R  LPYDIDG+VYKV+  + Q+QLG  +R+PR+ ++HKF  ++ +
Sbjct: 310 GAQGLLSFHREVGERRDQLPYDIDGVVYKVNAIAEQEQLGFVSRAPRFALAHKFPAQEMT 369

Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396
           T + DI++Q+GRTG +TPVARL PV +GG  +TNATLHNED I+            +D+ 
Sbjct: 370 TTVEDIEVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEIRR-----------KDVH 418

Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456
           +GD V+V+RAG+VIP+VV +++  R  DA+ F  P+ CP+C S V R          A  
Sbjct: 419 IGDTVIVRRAGDVIPEVVAVVLERRPADARAFVMPTECPVCGSHVERLEGE------AIA 472

Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516
           RCTGGL C+AQ+ + L HF  R A +IEGLG + ++           +R PAD++ L   
Sbjct: 473 RCTGGLICAAQRKQALLHFAQRRAMDIEGLGDKVVEQLVD----LGIVRTPADLYKL--- 525

Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                 K+  +    D S +NL  +I + R  ++ RFIF+LGIRHVG   A+ LAK++  
Sbjct: 526 ---GVAKLAALDRMADKSASNLVAAIEQSRETTMNRFIFALGIRHVGEATAKDLAKHFGK 582

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PS 635
             N        +            V  VG ++AQ+I  F   P N+  +E L       +
Sbjct: 583 LDNLLAADEAALLE----------VNDVGPVVAQSIANFIAEPHNVEVIEQLRAAGVHWA 632

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
                      +  K  V TGTL  + R  A+E +   GA V+  +S+KTD ++ G   G
Sbjct: 633 ETEPTARAPLPLAGKTFVLTGTLPTMSREDAKEKLEAAGAKVAGSVSKKTDYVVAGAEAG 692

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           SKLEKAQ LGV +++EE  L LL +    
Sbjct: 693 SKLEKAQTLGVAVLDEEGMLKLLAEVGAA 721


>gi|170692136|ref|ZP_02883299.1| DNA ligase, NAD-dependent [Burkholderia graminis C4D1M]
 gi|170142566|gb|EDT10731.1| DNA ligase, NAD-dependent [Burkholderia graminis C4D1M]
          Length = 693

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 261/711 (36%), Positives = 391/711 (54%), Gaps = 49/711 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
                 L  E+   +  YY   +P + D+EYD L +  ++I    PDL     P+ P  +
Sbjct: 20  AARAEWLRAELERANYAYYVLDQPDLPDAEYDKLFKELESIEAEHPDLIV---PDSPTQR 76

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ---KKDDNSIFFTLEPKI 134
           +GGE       V H  P LSL   +  ED+  F  R+        K+    + +  E K 
Sbjct: 77  VGGEAASGFEPVVHDQPMLSLNNGFADEDIIAFDKRVGDALGNNAKEPPVPVDYATELKF 136

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193
           DG  I++RY  G FV AA RGDG +GE+V+  IR + +IP  L     P I++VRGEV +
Sbjct: 137 DGLAISLRYVDGVFVQAATRGDGATGENVTENIRTVRSIPLRLKGKRVPHILDVRGEVLM 196

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFA 251
            K DF  LN+   A G K +ANPRNAA+G LR+L+P     R L+FF +G+G        
Sbjct: 197 FKRDFERLNERQRAAGHKEFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGIEMP 256

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E+L   + LG PVN+         G++++++ +   R  LPYDIDG+VYKV+    
Sbjct: 257 ATHSELLDWYKELGLPVNSERAVVKGAEGLLAFFHAVGEKRDKLPYDIDGVVYKVNRRDE 316

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNA
Sbjct: 317 QEALGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNA 376

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA+ F  P
Sbjct: 377 TLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALIDRRPDDAREFVMP 425

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S + R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +
Sbjct: 426 THCPVCGSNIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKII 479

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D   +       +R PAD+F L        + +  +  F D S  NL DS+ K R+ +L 
Sbjct: 480 DQLVEQN----LVRTPADLFNL------GFSTLAQLDRFADKSAQNLLDSLEKARHTTLS 529

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFI++LGIRHVG   A+ LAK++ S     +              +L+ V  VG ++A++
Sbjct: 530 RFIYALGIRHVGESTAKDLAKHFGSLDPIMEA----------SVEALLEVNDVGPVVAES 579

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           I +F+    N   +E L      +        +     +  K +V TGTL  + R +A+E
Sbjct: 580 IHQFFAEEHNRTVIEQLRAHGKVTWPEGPPAPRAPQGVLAGKTIVLTGTLPNLAREEAKE 639

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +   GA V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+
Sbjct: 640 MLEAAGAKVAGSVSKKTDYVVAGAEAGSKLVKAEELGIPVLDEDGMRKLLE 690


>gi|196250518|ref|ZP_03149209.1| DNA ligase, NAD-dependent [Geobacillus sp. G11MC16]
 gi|196210008|gb|EDY04776.1| DNA ligase, NAD-dependent [Geobacillus sp. G11MC16]
          Length = 670

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 258/717 (35%), Positives = 399/717 (55%), Gaps = 54/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +QA++  + L + ++ +   YY   +P + D+EYD L +   AI   +P+L  S   
Sbjct: 1   MDRQQAKRRATELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEKQYPELKTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IGG    +  KVTH +P +SL   +N  DLR F  R+      ++     +  E
Sbjct: 58  DSPTQRIGGPPLEAFRKVTHRVPMMSLANAFNEGDLRDFDRRVR-----QEVGEAAYVCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L+  +   +E RGE 
Sbjct: 113 LKIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLNEPVS--LEARGEA 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           ++ K  FL LN+E  A G + +ANPRNAA+G LR+L+P    +R L+ FV+GL    E+ 
Sbjct: 171 FMPKASFLRLNEERQARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELG 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     L  ++ LGF VN   R+  T   ++++ NE K  R  LPY+IDG+V KVD F+
Sbjct: 231 IESHSAALSYLQSLGFKVNPERRRCATIDEVIAFVNEWKEKRPQLPYEIDGIVIKVDSFA 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  A+SPRW I++KF  ++  T L+ I++ +GRTG +TP A LEPV + G  +  
Sbjct: 291 QQRQLGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGAVTPTAILEPVRVAGTTVQR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED+I+            +DIR+GD V++K+AG++IP+VV ++V+ R  D  PF+ 
Sbjct: 351 ATLHNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDEVPFTM 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  ERL HF SR A NIEGLG++ 
Sbjct: 400 PTHCPECESELVRLDGE------VALRCLNPK-CPAQLRERLIHFASRSAMNIEGLGEKV 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  +   AD++ L + Q         +   G+ S  NL  +I   +  SL
Sbjct: 453 VTQLFN----AGLVHDVADLYQLTKEQLVG------LERMGEKSAANLLAAIEASKQNSL 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR+VGA+ A+ LA+++ + +                   L+ VP +G+ +A 
Sbjct: 503 ERLLFGLGIRYVGAKAAQLLAEHFETMERLEAATK----------DELMAVPEIGEKMAD 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I  ++  P  +  +  L         +      E   SS +  K +V TG L  + R++
Sbjct: 553 SITTYFSQPEAVELLNELRTYGVNMAYKGRKRTAETPASSVLAGKTVVLTGKLASMSRNE 612

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+E + +LG  V+  +SR TDI+I G++ GSKL+KAQQLG++I +E +FL  + +  
Sbjct: 613 AKEQIERLGGRVTGSVSRSTDIVIAGEDAGSKLDKAQQLGIEIWDETRFLQEISREE 669


>gi|166216286|sp|A0KVI4|DNLJ_SHESA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 689

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 247/713 (34%), Positives = 389/713 (54%), Gaps = 51/713 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +   A+  + +L Q ++ H+  YY    P I DSEYD L +R   +   +P    +   +
Sbjct: 19  TPHNAQPIMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAA---D 75

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F  EP
Sbjct: 76  SPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDRVG-----EVSFCCEP 130

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEV 191
           K+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L   N PE++EVRGE 
Sbjct: 131 KLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVRGEA 190

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KTS 247
           ++ K  F ALN+       K + NPRNAA+G LR+L+     +R L+F+ + LG    TS
Sbjct: 191 FMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPTS 250

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              AK  YE LQ+++  G PV++ ++  +    + +YY ++ + R+ LP++IDG+V KV+
Sbjct: 251 HELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVVMKVN 310

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q+ LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG  
Sbjct: 311 DIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVT 370

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN D I  L            + VGD V+++RAG+VIP++V I+   R  DA+ 
Sbjct: 371 VSNATLHNADEIARL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKA 419

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
            +FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+G+G
Sbjct: 420 IAFPQHCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDIDGMG 473

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++     E     ++ PAD+F L        + +  +   G  S TNL  +I   + 
Sbjct: 474 DKIVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGIKSATNLALAIEAAKT 523

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RF+++LGIR VG   A +LA ++ S +                   LI+V  +G++
Sbjct: 524 TTLPRFLYALGIREVGETTAANLATHFGSLEALRVAT----------IEQLIQVEDIGEV 573

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKA 666
           +AQ +  F+  P N+  ++AL+            +     ++ +  V TGTL ++ R+ A
Sbjct: 574 VAQHVAHFFAQPHNLEVIDALIAAGVNWPAIAAPSADEQPLKGQTWVLTGTLNQLNRNDA 633

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK++ E++ L LL 
Sbjct: 634 KAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 686


>gi|117920017|ref|YP_869209.1| DNA ligase, NAD-dependent [Shewanella sp. ANA-3]
 gi|117612349|gb|ABK47803.1| DNA ligase, NAD-dependent [Shewanella sp. ANA-3]
          Length = 691

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 247/713 (34%), Positives = 389/713 (54%), Gaps = 51/713 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +   A+  + +L Q ++ H+  YY    P I DSEYD L +R   +   +P    +   +
Sbjct: 21  TPHNAQPIMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAA---D 77

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F  EP
Sbjct: 78  SPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDRVG-----EVSFCCEP 132

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEV 191
           K+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L   N PE++EVRGE 
Sbjct: 133 KLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVRGEA 192

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KTS 247
           ++ K  F ALN+       K + NPRNAA+G LR+L+     +R L+F+ + LG    TS
Sbjct: 193 FMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPTS 252

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              AK  YE LQ+++  G PV++ ++  +    + +YY ++ + R+ LP++IDG+V KV+
Sbjct: 253 HELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVVMKVN 312

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q+ LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG  
Sbjct: 313 DIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVT 372

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN D I  L            + VGD V+++RAG+VIP++V I+   R  DA+ 
Sbjct: 373 VSNATLHNADEIARL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKA 421

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
            +FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+G+G
Sbjct: 422 IAFPQHCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDIDGMG 475

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++     E     ++ PAD+F L        + +  +   G  S TNL  +I   + 
Sbjct: 476 DKIVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGIKSATNLALAIEAAKT 525

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RF+++LGIR VG   A +LA ++ S +                   LI+V  +G++
Sbjct: 526 TTLPRFLYALGIREVGETTAANLATHFGSLEALRVAT----------IEQLIQVEDIGEV 575

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKA 666
           +AQ +  F+  P N+  ++AL+            +     ++ +  V TGTL ++ R+ A
Sbjct: 576 VAQHVAHFFAQPHNLEVIDALIAAGVNWPAIAAPSADEQPLKGQTWVLTGTLNQLNRNDA 635

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK++ E++ L LL 
Sbjct: 636 KAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 688


>gi|303250616|ref|ZP_07336813.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252937|ref|ZP_07534825.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|302650604|gb|EFL80763.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859575|gb|EFM91600.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
          Length = 682

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 253/708 (35%), Positives = 402/708 (56%), Gaps = 46/708 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   +   + P  ++
Sbjct: 16  AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ E+L  F+ R+  +  +    ++ F  EPK+DG  
Sbjct: 73  GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKND 197
           ++I Y  G    AA RGDG +GED+++ IR I  IP      N P  +EVRGEV++ +  
Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 191

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFAKGQ 254
           F ALN+  +  G K +ANPRNAA+G LR+L+P    +     N +  G+ ++ +      
Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L+       T +  +   G+ S  N  +SI K +N +L RF+
Sbjct: 475 MERE----LVHTPADLFKLE------HTTLMRLERMGEKSAQNALNSIEKAKNTTLARFL 524

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++ +                  +  L  V  VG+++A  IV 
Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574

Query: 615 FYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+Q P N+  VE L+ +          +   + ++ K +V TGTL ++ R +A+  +   
Sbjct: 575 FWQEPHNVTVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L  + 
Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLTKAQELGVKVLTEQEFIALTGEN 682


>gi|126462048|ref|YP_001043162.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17029]
 gi|166216229|sp|A3PJ74|DNLJ_RHOS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|126103712|gb|ABN76390.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17029]
          Length = 704

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 303/714 (42%), Positives = 437/714 (61%), Gaps = 17/714 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P++ L+  +A  EL+ L + I   +  Y+ +  P I D++YDALK R  AI   FP+L R
Sbjct: 6   PVDQLTEAEAATELARLAEAIEAANTAYHTHDAPQISDADYDALKLRNRAIEEQFPELRR 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           S   + P +++GG +     KV H +  LSLE  +++ ++  +I RI R+     D  + 
Sbjct: 66  S---DSPSDRVGGALAEGFAKVRHEVRMLSLENAFDLAEVEDWIERIRRYLGHVGD--LL 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT EPKIDG  +++RYEKG+ V AA RGDG +GE+V+   R I  +P  L    P+++EV
Sbjct: 121 FTAEPKIDGLSLSLRYEKGRLVQAATRGDGETGENVTENARTIADLPTELDGA-PDLLEV 179

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+S  DF ALN    A G++ +ANPRNAA+G LR+L+P    +R L FF +  G  
Sbjct: 180 RGEVYMSHEDFAALNGRQEAAGQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAH 239

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE  A  Q+E + ++  LGF  N   R       +++ + E++  R+ L YDIDG+VYKV
Sbjct: 240 SEPLAATQHEAIARLAALGFATNPLTRLCTGPEELLAQHAEIERQRAALGYDIDGVVYKV 299

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +LQ++LG RA +PRW I+HKFA + A T+L  IDIQ+GRTG L+PVARL+PV +GG 
Sbjct: 300 DDLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDIQVGRTGALSPVARLKPVTVGGV 359

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++ NATLHNEDYI G D+ G+ +RGG+DIRVGD V V RAG+VIPKV D+ ++ R   A 
Sbjct: 360 VVANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLDRRPEGAA 419

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            + FP  CP C S  +R+         +  RCTGGL C AQQ+ERLKHFVSR AF+IEGL
Sbjct: 420 RYRFPETCPECGSEAIREPG------DSVRRCTGGLICPAQQVERLKHFVSRAAFDIEGL 473

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++  ++       IR PADIF L  R +    ++EN  G+G  S  NL+ +I  RR
Sbjct: 474 GAKQVEALWRD----GWIRQPADIFELPNRYREGIQRLENREGWGRKSAENLFAAIEARR 529

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I+L R IF+LGIRHVG   A  LA +Y S+  F   +         +W  L+ +  VG 
Sbjct: 530 RIALHRLIFALGIRHVGETTATLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGA 589

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A ++V  +       AV+AL   ++         V+S +  K +VFTGTL+K+ R +A
Sbjct: 590 VLATSLVTAFHQEAERAAVDALAAHLTVEDAEVRAPVASPVAGKIVVFTGTLEKMSRAEA 649

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +     LGA VS  +S +TD+++ G   GSK ++A  LG++ ++E+ +L L+  
Sbjct: 650 KARAEALGAKVSGSVSARTDVVVAGPGAGSKAKQAAALGIETIDEDGWLRLIGD 703


>gi|271501855|ref|YP_003334881.1| DNA ligase [Dickeya dadantii Ech586]
 gi|270345410|gb|ACZ78175.1| DNA ligase, NAD-dependent [Dickeya dadantii Ech586]
          Length = 683

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 254/714 (35%), Positives = 397/714 (55%), Gaps = 50/714 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
            I     ++ +L  ++ YH+  Y+    P I D+EYD L      +  A P+L     P+
Sbjct: 11  DIAAVAAQVEALRAQLRYHEYKYHVEDAPEIPDAEYDTLMNTLKVLEQAHPELV---TPD 67

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G     +   V H +P LSL+ +++      F  RI      K+D  + F  E 
Sbjct: 68  SPTQRVGAAPLDAFDTVAHDVPMLSLDNVFDEASFLAFCKRINDRL--KNDAELTFCCEL 125

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-IIEVRGEV 191
           K+DG  +++ YE+G  V AA RGDG +GE+++A IR I  IP  L  +     +EVRGEV
Sbjct: 126 KLDGLAVSLLYEQGVLVRAATRGDGTTGENITANIRTIGAIPLRLHGDNIPTRLEVRGEV 185

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++    F ALN+E    G K +ANPRNAA+G LR+L+P    TR L F  +G+G      
Sbjct: 186 FMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITATRPLTFLCYGVGLVEGGT 245

Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                ++ L + R  G PV++ +R       ++++Y +++  R TL +DIDG+V KV+E 
Sbjct: 246 LPDTHWQRLMQFRDWGLPVSDRIRLCTGSEAVLNFYRQVEQERETLGFDIDGVVIKVNEL 305

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  AR+PRW ++ KF  ++  T L D++ Q+GRTG +TPVARLEPV + G +++
Sbjct: 306 ALQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVARLEPVAVAGVVVS 365

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+ L            I++GDRV V+RAG+VIP++V ++++ER  DA+P  
Sbjct: 366 NATLHNADEIERL-----------GIQIGDRVAVRRAGDVIPQIVSVVLSERPSDARPIV 414

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP+C S + R          A  RCTGGL C+AQ+ E LKHFVSR A ++EG+G +
Sbjct: 415 FPEHCPVCGSELERVEGE------AVTRCTGGLFCAAQRKEALKHFVSRRALDVEGMGDK 468

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     ++ PAD+  L          +  +   G  S  NL  +++K ++ +
Sbjct: 469 IIDQLVEKE----YVKTPADLLRL------DIGILTRLDRMGPKSAQNLVSALDKAKSTT 518

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A +LA ++ +                 D  +L +VP VG ++A
Sbjct: 519 FARFLYALGIRDVGEATAANLASHFGTLDALQAA----------DLEALQQVPDVGIVVA 568

Query: 610 QAIVEFYQNPRNICAVEALLK-EVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRH 664
             +  F     N   ++AL+  EV            +  +S    K +V TG+L ++ R 
Sbjct: 569 THVRHFLDEAHNQQVIQALISDEVGIHWPDPVRVDVEASTSPFAGKTVVLTGSLSQLSRD 628

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 629 EAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEMMRLL 682


>gi|251793989|ref|YP_003008721.1| NAD-dependent DNA ligase LigA [Aggregatibacter aphrophilus NJ8700]
 gi|247535388|gb|ACS98634.1| DNA ligase, NAD-dependent [Aggregatibacter aphrophilus NJ8700]
          Length = 671

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 249/708 (35%), Positives = 394/708 (55%), Gaps = 45/708 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L + + YH+  Y+   +P I DSEYD L  +  A+    P L  +   + P 
Sbjct: 4   SIQQQIDDLRKTLRYHEYQYHVLDEPQIPDSEYDRLFHQLKALEQQHPALITA---DSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G        ++ H +P LSL+  ++ E+   F+ RI           + F  EPK+D
Sbjct: 61  QRVGARPLSEFAQIKHELPMLSLDNAFSDEEFLAFVKRIQDRLVFAP-EPLTFCCEPKLD 119

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           G  ++I Y  G    AA RGDG +GED++  IR I  IP  L + N P  +EVRGEV++ 
Sbjct: 120 GLAVSILYVNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMP 179

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF-AK 252
            + F  LN+  +  G K +ANPRNAA+G LR+L+P   ++    F  + +G    I    
Sbjct: 180 HDGFERLNERALEQGEKTFANPRNAAAGSLRQLDPKITSQRPLVFNAYSIGVAQRIDLPP 239

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +E LQ ++ +G PVN+ +R  +    ++++Y  M   RS+L YDIDG V KV++  LQ
Sbjct: 240 THFERLQWLKSIGVPVNSEIRLCDGIENVLNFYRTMMEKRSSLGYDIDGTVLKVNDIELQ 299

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+L+PV + G  ++NAT
Sbjct: 300 QRLGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTVSNAT 359

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+ L           +I +GD V+++RAG+VIP+++ ++ + R  +A+   FP+
Sbjct: 360 LHNGDEIERL-----------NIAIGDTVIIRRAGDVIPQIIGVVHDRRPANARQIVFPT 408

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S +VR          A  RCTGGL C+AQ+ E LKHFVSR A NI+G+G + ++
Sbjct: 409 HCPVCDSLIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMNIDGVGAKLIE 462

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                E     +  PAD+F L        T I  +   G  S  N   S+ K ++ +L R
Sbjct: 463 QLVDRE----LVHTPADLFKL------DLTTITRLERMGPKSAENALASLEKAKHTTLAR 512

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG  IA +LA ++ + +               D   L +VP VG+++A  I
Sbjct: 513 FIFALGIRDVGEAIALNLANHFKTLEALQNA----------DLEQLQQVPDVGEVVANRI 562

Query: 613 VEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             F++   N+  V  L+ +         ++   +  ++K +V TGTL ++ R+ A+  + 
Sbjct: 563 FVFWREEHNVAVVNDLIAQGVHWETVEVQEVKENPFKDKTVVLTGTLSQMGRNDAKVLLQ 622

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           QLGA VS  +S KTD +I G+  GSKL KA +LGV++++EE+F   + 
Sbjct: 623 QLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFWAWVN 670


>gi|297528690|ref|YP_003669965.1| DNA ligase, NAD-dependent [Geobacillus sp. C56-T3]
 gi|297251942|gb|ADI25388.1| DNA ligase, NAD-dependent [Geobacillus sp. C56-T3]
          Length = 670

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 259/717 (36%), Positives = 395/717 (55%), Gaps = 54/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +QA +  + L + +  +   YY   +P + D+EYD L +   AI   +P+L  S   
Sbjct: 1   MDRQQAERRAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IGG    +  KVTH IP +SL   ++  DLR F  RI      ++     +  E
Sbjct: 58  DSPTQRIGGPPLEAFRKVTHRIPMMSLANAFDEGDLRDFDRRIR-----QEVGEAAYVCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L   +   +E RGE 
Sbjct: 113 LKIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLKEPVS--LEARGEA 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           ++ K  FL LN+E  A G + +ANPRNAA+G LR+L+P    +R L+ FV+GL    E+ 
Sbjct: 171 FMPKASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELG 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   E L  ++ LGF VN   R+      ++++ NE    R  LPY+IDG+V KVD F+
Sbjct: 231 IESHSEALDYLQALGFKVNPERRRCANIDEVIAFINEWHEKRPQLPYEIDGIVIKVDSFA 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T L+ I++ +GRTG++TP A LEPV + G  +  
Sbjct: 291 QQRELGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED+I+            +DIR+GD V++K+AG++IP+VV ++V+ R  D  PF  
Sbjct: 351 ATLHNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVM 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  ERL HF SR A NIEGLG++ 
Sbjct: 400 PTHCPECESELVRLDGE------VALRCLNPK-CPAQLRERLIHFASRAAMNIEGLGEKV 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  +   AD++ L + Q         +   G+ S TNL  +I   +  SL
Sbjct: 453 VTQLFN----AGLVHDVADLYRLTKEQLIG------LERMGEKSATNLLAAIEASKQNSL 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR+VGA+ A+ LA+++ + +   +               L+ VP +G+ +A 
Sbjct: 503 ERLLFGLGIRYVGAKAAQLLAEHFETMERLEKATK----------EELMAVPEIGEKMAD 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+ F+  P     +  L         +      E    S    K +V TG L  + R++
Sbjct: 553 SIIAFFSQPEAAELLHELRLYGVNMAYKGPKRAAEAPADSAFAGKTVVLTGKLASMSRNE 612

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+E + +LG  V+  +SR TDI+I G++ GSKLEKAQQLG++I +E +FL  + +  
Sbjct: 613 AKEEIERLGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDESRFLQEISRGK 669


>gi|294635487|ref|ZP_06713972.1| DNA ligase, NAD-dependent [Edwardsiella tarda ATCC 23685]
 gi|291091145|gb|EFE23706.1| DNA ligase, NAD-dependent [Edwardsiella tarda ATCC 23685]
          Length = 675

 Score =  569 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 252/718 (35%), Positives = 398/718 (55%), Gaps = 52/718 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++     ++L  L   + +H+  YY   +P + D+EYD L  +  A+   +P L  +   
Sbjct: 1   MT-STIEQQLEQLRAALRHHEYQYYVLDEPQVTDAEYDRLMMQLKALESDYPQLVTA--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG    +  +V H +P LSL+ +++ E  R F  R++     K D ++ F  E
Sbjct: 57  DSPSQRVGGAPLAAFGQVHHEVPMLSLDNVFDEESYRAFDKRLHERL--KSDAALTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190
            K+DG  +++ YE+G  V AA RGDG +GED+++ ++ I  IP  L     P+ IEVRGE
Sbjct: 115 LKLDGLAVSLLYEQGVLVRAATRGDGSTGEDITSNVKTIRAIPLRLQGEDIPDRIEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V++ +  F A+N+E    G K +ANPRNAA+G LR+L+P     R L F+ +G G     
Sbjct: 175 VFMPQAGFEAMNEEARRRGGKIFANPRNAAAGSLRQLDPRITARRPLTFYCYGAGLLEGG 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 Y+ LQ+ +  G PV+  V++ +    +++YY + +  R TL +DIDG+V KVD+
Sbjct: 235 TLPGSHYQCLQRFKSWGLPVSERVKRCHGSDEVLAYYRQTEQDRPTLGFDIDGVVIKVDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q+ LG  AR+PRW  + KF  ++  T+L  ++ Q+GRTG +TPVARLEPV + G  +
Sbjct: 295 IATQEALGFVARAPRWATAFKFPAQEQMTQLNGVEFQVGRTGAITPVARLEPVQVAGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            +R+GD V+V+RAG+VIP+VV ++ ++R  DA   
Sbjct: 355 SNATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVESQRPADATEI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+C S V R          A  RC+GGL C+AQ+ E LKHFVSR A ++EG+G 
Sbjct: 404 LFPTHCPVCGSEVERIEGE------AVARCSGGLICAAQRKESLKHFVSRRAMDVEGMGD 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   + E     +  PAD++ L      S  K+  +   G  S   L  ++++ R+ 
Sbjct: 458 KVIEQLVERE----YVTTPADLYRL------SAGKLTGLERMGPKSANKLIAALDRSRST 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF+F+LGIR VG   A +LA ++ S                 D  SL  VP VG+++
Sbjct: 508 TLARFLFALGIREVGEATAANLASHFGSLSALRGA----------DLESLKSVPEVGEVV 557

Query: 609 AQAIVEFYQNPRNICAVEALL-KEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQ 662
           A+ I  F     N   ++ L+  E+               + S    K +V TG+L  + 
Sbjct: 558 ARHIRHFLSEAHNCQVIDELISAEIGIHWPDVTPALQAAEIDSPFAGKTVVLTGSLSVLS 617

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R +A++ +  LGA VS  +S+KTD++I G+  GSKL KA  LG+ +++E Q L +L +
Sbjct: 618 RDEAKDRLVALGAKVSGSVSKKTDLVIAGEAAGSKLVKANTLGITVIDEAQLLQMLGE 675


>gi|240948595|ref|ZP_04752968.1| NAD-dependent DNA ligase LigA [Actinobacillus minor NM305]
 gi|240297103|gb|EER47674.1| NAD-dependent DNA ligase LigA [Actinobacillus minor NM305]
          Length = 679

 Score =  569 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 257/704 (36%), Positives = 400/704 (56%), Gaps = 46/704 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+ +L  ++  ++  Y+    P++ D+EYD L      +    P+L     P+ P  ++G
Sbjct: 15  EIETLRNKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELI---TPDSPTQRVG 71

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      +VTH +P LSL+  ++ EDL  F+ R+  +       S+ F  EPK+DG  +
Sbjct: 72  AKPLDGFSQVTHELPMLSLDNAFSDEDLDGFLRRMESYISVTPS-SLDFCCEPKLDGLAV 130

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKNDF 198
           +I Y  G    AA RGDG +GED++A IR I  IP    + N P  +EVRGEV++ +  F
Sbjct: 131 SILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLRLKTDNPPLRLEVRGEVFMPQKGF 190

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF---FVHGLGKTSEIFAKGQY 255
            ALN + +  G K +ANPRNAA+G LR+L+P    +       +  G+  + +      +
Sbjct: 191 EALNQKALEKGEKTFANPRNAAAGSLRQLDPKITAQRPLMLNAYSIGIYDSDDELPNTHF 250

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ ++ LG PVNN +R       ++ +Y ++++ R TL YDIDG V KV++ +LQ+QL
Sbjct: 251 ERLQWLKSLGIPVNNEIRLEKGRENLLKFYADIQTKRPTLGYDIDGTVLKVNDIALQEQL 310

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLHN
Sbjct: 311 GFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHN 370

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L            I +GD V+++RAG+VIP+++ I+   R  +A+  +FP+ CP
Sbjct: 371 GDEIERL-----------GIAIGDTVIIRRAGDVIPQIIGIVAERRPENAKKITFPTACP 419

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           IC S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++   
Sbjct: 420 ICGSAVVRVEGE------AVARCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLIEQLM 473

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           + E     +  PAD+F L +        +  +   G+ S  N  +SI K +N +L RF+F
Sbjct: 474 ERE----LVHTPADLFKLDQ------VTLMRLERMGEKSAQNALNSIEKAKNTTLPRFLF 523

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   A +LA ++ S +                +  L  V  VG+++A  IV F
Sbjct: 524 ALGIRDVGEATALNLANHFGSLEAIRTAT----------FEQLQEVQDVGEVVANRIVRF 573

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +Q P N+  VE L+++        +  +  + +++K +V TGTL  + R +A+  +  LG
Sbjct: 574 WQEPHNVEVVEDLIQQGVVWQNIEQVEIADNPLKDKNVVLTGTLSVLTRDQAKALLQGLG 633

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             VS  +S KTD +I G+  GSKL KAQ+LGVK+++E+ FL ++
Sbjct: 634 CKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLSEQDFLEIV 677


>gi|165976722|ref|YP_001652315.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190359223|sp|B0BQN6|DNLJ_ACTPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|165876823|gb|ABY69871.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
          Length = 682

 Score =  569 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 251/708 (35%), Positives = 400/708 (56%), Gaps = 46/708 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   +   + P  ++
Sbjct: 16  AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ E+L  F+ R+  +  +    ++ F  EPK+DG  
Sbjct: 73  GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKND 197
           ++I Y  G    AA RGDG +GED+++ IR +  IP      N P  +EVRGEV++ +  
Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTVRNIPLKLNMDNPPARLEVRGEVFMPQKG 191

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFAKGQ 254
           F  LN+  +  G K +ANPRNAA+G LR+L+P    +     N +  G+ ++ +      
Sbjct: 192 FETLNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L+       T +  +   G  S  N  +SI K +N +L RF+
Sbjct: 475 MERE----LVHTPADLFKLE------HTTLMRLERMGGKSAQNALNSIEKAKNTTLARFL 524

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++ +                  +  L  V  VG+++A  IV 
Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574

Query: 615 FYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+Q P N+  VE L+ +          +   + ++ K +V TGTL ++ R +A+  +   
Sbjct: 575 FWQEPHNVTVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L  + 
Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIALTGEN 682


>gi|156973609|ref|YP_001444516.1| NAD-dependent DNA ligase LigA [Vibrio harveyi ATCC BAA-1116]
 gi|166216277|sp|A7MT54|DNLJ_VIBHB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|156525203|gb|ABU70289.1| hypothetical protein VIBHAR_01312 [Vibrio harveyi ATCC BAA-1116]
          Length = 670

 Score =  569 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 254/713 (35%), Positives = 391/713 (54%), Gaps = 48/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E   + L  L++ + YH   YY    P I D+EYD + R    I    P+L      
Sbjct: 1   MS-ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPELVTV--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+      +VTH +P LSL+  ++  +L  F  R              +  E
Sbjct: 57  DSPSLRVGGQPLSEFSQVTHEVPMLSLDNAFDDAELDGFHKRAQDRV--VGHTIKQYCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L     P  +EVRGE
Sbjct: 115 PKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTISAIPLKLQGKGWPTRLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249
           V++ K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G     
Sbjct: 175 VFMPKAGFDKLNENARKKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVEGA 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A   YE   +++  G P+    ++ ++   + +YY ++ + R  L Y+IDG+V KVD+
Sbjct: 235 TLANSHYERFLQIKSWGLPMCPETKRVDSLEEVKAYYQDILTRREALAYEIDGVVIKVDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            ++Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEP+ +GG  +
Sbjct: 295 IAIQERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPIFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            + VGD+V+++RAG+VIP+VV +I   R   A+  
Sbjct: 355 SNATLHNADEIERLQ-----------VMVGDQVVIRRAGDVIPQVVSVIKERRPETAREI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++GLG 
Sbjct: 404 LFPDACPVCGSHVERIEGE------AVTRCTGGLVCQAQRKEALKHFVSRKALDVDGLGD 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L      S   +  +   G  S TN+ +++ K +  
Sbjct: 458 KVIEQLVDRE----MVETPADLFKL------SAGVLTVLERMGPKSATNVVNALEKSKLT 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA+Y+ +     Q               LI V  +G I+
Sbjct: 508 TLPRFLYSLGIREVGEATAANLAQYFKNLDAIQQATE----------EQLIEVQDIGVIV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A+ I  F+   +N   V+ LL +    P I   ++ V   +E K +V TGTL ++ R +A
Sbjct: 558 AKHITTFFGEEKNQAVVQDLLAQGINWPEIAAPQEGVELPLEGKTVVLTGTLSQLGRSEA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L++
Sbjct: 618 KEALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQTEQDLLNLMK 670


>gi|307246220|ref|ZP_07528301.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307255203|ref|ZP_07537019.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307259638|ref|ZP_07541362.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306852829|gb|EFM85053.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306861831|gb|EFM93809.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866283|gb|EFM98147.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 682

 Score =  569 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 252/708 (35%), Positives = 401/708 (56%), Gaps = 46/708 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   +   + P  ++
Sbjct: 16  AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ E+L  F+ R+  +  +    ++ F  EPK+DG  
Sbjct: 73  GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKND 197
           ++I Y  G    AA RGDG +GED+++ IR +  IP      N P  +EVRGEV++ +  
Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTVRNIPLKLNMDNPPARLEVRGEVFMPQKG 191

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFAKGQ 254
           F ALN+  +  G K +ANPRNAA+G LR+L+P    +     N +  G+ ++ +      
Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGAVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L+       T +  +   G  S  N  +SI K +N +L RF+
Sbjct: 475 MERE----LVHTPADLFKLE------HTTLMRLERMGGKSAQNALNSIEKAKNTTLARFL 524

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++ +                  +  L  V  VG+++A  IV 
Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574

Query: 615 FYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+Q P N+  VE L+ +          +   + ++ K +V TGTL ++ R +A+  +   
Sbjct: 575 FWQEPHNVTVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L  + 
Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIALTGEN 682


>gi|254785950|ref|YP_003073379.1| DNA ligase, NAD-dependent [Teredinibacter turnerae T7901]
 gi|237685872|gb|ACR13136.1| DNA ligase, NAD-dependent [Teredinibacter turnerae T7901]
          Length = 676

 Score =  568 bits (1464), Expect = e-160,   Method: Composition-based stats.
 Identities = 252/708 (35%), Positives = 387/708 (54%), Gaps = 45/708 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   +  + L Q +++H+  YY   +P I D+EYD L      +   FP L   E  + P
Sbjct: 9   EAVMRRCNELHQLLNHHNRQYYLLDEPEIPDAEYDRLFHELKTLEAEFPQL---ETADSP 65

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G E       V H +P LSL+  ++ ED+R F  RI        D  + +  EPK 
Sbjct: 66  TQRVGAEPLKGFSSVQHEVPMLSLDNAFSDEDMRAFEKRIQDRL--ASDAELEYACEPKF 123

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193
           DG  +++ Y  G+    A RGDG +GED++  +R I ++P  LS +  P + EVRGEV +
Sbjct: 124 DGIAVSLLYRDGRLQRGATRGDGATGEDITQNVRTIGSVPLKLSGDNVPAVFEVRGEVVM 183

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F  LN      G + + NPRNAA+G LR+L+P+    R L FF + +G        
Sbjct: 184 PRAGFAKLNAAAQERGDRLFVNPRNAAAGALRQLDPSITAKRPLVFFAYSVGYVEGELPP 243

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +  L  +  LGF V      A+   G ++YY ++   R+ L YDIDG+V+KV+++ LQ
Sbjct: 244 THFGTLDLLEKLGFVVAGERALAHGAGGCLAYYRDLGEKRADLGYDIDGIVFKVNDYGLQ 303

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R+PRW I+HKF  ++  T L D++ Q+GRTG +TPVARLEPV +GG  ++NAT
Sbjct: 304 NRLGFVSRAPRWAIAHKFPAQEEMTVLNDVEFQVGRTGAVTPVARLEPVFVGGVTVSNAT 363

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+ L            +++GD+V+V+RAG+VIP++V ++++ R   A+   FP+
Sbjct: 364 LHNRDEIERL-----------GVKIGDQVVVRRAGDVIPQIVSVVLSARPQHAKEIVFPA 412

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S+V            A  RCTGGL C+AQ+ E +KHFVSR A +IEGLG + ++
Sbjct: 413 NCPVCGSQVEVLEGE------AVARCTGGLVCAAQRKEAIKHFVSRTAMDIEGLGDKLVE 466

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      I   ADI+ L+         + N+   GD S  N+ D+I K ++ +L R
Sbjct: 467 QLV----GLGHIEHIADIYRLEHE------VLANMERMGDKSAQNVIDAIEKSKSTTLPR 516

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+F+LGIR VG   AR++A+++   +N              D  +L+ V  VG I+A  I
Sbjct: 517 FLFALGIREVGQATARNIAQHFGMLKNLMDA----------DQEALVAVDDVGPIVAHHI 566

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F+Q   N   +  L +              S  ++ K  V TGTL+ + R +A+E + 
Sbjct: 567 FDFFQQQGNRAQIALLQEAGVHWPESAPVAAESLPLDGKTYVLTGTLETLSRDEAKEKLL 626

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            LGA V+  +S+KTD ++ G   GSKL KA+ LG+++++E  F+ LL 
Sbjct: 627 ALGAKVTGSVSKKTDCVVAGPGAGSKLAKAESLGIEVLDEAAFVALLD 674


>gi|7673996|sp|O87703|DNLJ_BACST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|3688229|emb|CAA09732.1| DNA ligase [Geobacillus stearothermophilus]
          Length = 670

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 254/717 (35%), Positives = 392/717 (54%), Gaps = 54/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +QA +  + L + ++ +   YY   +P + D+EYD L +   AI   +P+L  S   
Sbjct: 1   MDRQQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IGG    +  KV H +P +SL   +   DLR F  R+      ++     +  E
Sbjct: 58  DSPTQRIGGPPLEAFRKVAHRVPMMSLANAFGEGDLRDFDRRVR-----QEVGEAAYVCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L   +   +E RGE 
Sbjct: 113 LKIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLKEPVS--LEARGEA 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           ++ K  FL LN+E  A G + +ANPRNAA+G LR+L+P    +R L+ FV+GL     + 
Sbjct: 171 FMPKASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALG 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  ++ LGF VN   R+      ++++ +E    R  LPY+IDG+V KVD F+
Sbjct: 231 IASHSEALDYLQALGFKVNPERRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFA 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  A+SPRW I++KF  ++  T L+ I++ +GRTG++TP A LEPV + G  +  
Sbjct: 291 QQRALGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED+I+            +DIR+GD V++K+AG++IP+VV ++V+ R  D  PF+ 
Sbjct: 351 ATLHNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFAM 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  ERL HF SR A NIEGLG++ 
Sbjct: 400 PTHCPECESELVRLEGE------VALRCLNP-NCPAQLRERLIHFASRAAMNIEGLGEKV 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  +R  AD++ L + Q         +   G+ S  NL  +I   +  SL
Sbjct: 453 VTQLFN----AGLVRDVADLYCLTKEQLVG------LERMGEKSAANLLAAIEASKQNSL 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR+VGA+ A+ LA+++ + +   +               L+ VP +G+ +A 
Sbjct: 503 ERLLFGLGIRYVGAKAAQLLAEHFETMERLERATK----------EELMAVPEIGEKMAD 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           AI  F+  P     ++ L         +      E    S    K +V TG L  + R++
Sbjct: 553 AITAFFAQPEATELLQELRAYGVNMAYKGPKRSAEAPADSAFAGKTVVLTGKLASMSRNE 612

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+E + +LG  V+  +SR TD++I G++ GSKLEKAQQLG++I +E +FL  + +  
Sbjct: 613 AKEQIERLGGRVTGSVSRSTDLVIAGEDAGSKLEKAQQLGIEIWDESRFLQEINRGK 669


>gi|261822799|ref|YP_003260905.1| NAD-dependent DNA ligase LigA [Pectobacterium wasabiae WPP163]
 gi|261606812|gb|ACX89298.1| DNA ligase, NAD-dependent [Pectobacterium wasabiae WPP163]
          Length = 681

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 254/727 (34%), Positives = 397/727 (54%), Gaps = 57/727 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           MKK          +      ++ L + + +H+  Y+    P I DSEYD L +   A+  
Sbjct: 1   MKKEPAE------VNTVALRVAELRRVLRHHEYKYHVEDAPEIPDSEYDKLMQELKALEA 54

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P+L  S   + P  ++G     +  +V H +P LSL+ +++ E    F  RI      
Sbjct: 55  DHPELVTS---DSPTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRL-- 109

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           K+ + + F  E K+DG  +++ YE G  V AA RGDG +GE++++ IR +  IP  L   
Sbjct: 110 KNGDDLTFCCELKLDGLAVSLLYEDGVLVQAATRGDGTTGENITSNIRTVGAIPLRLEGE 169

Query: 181 I-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
             P  +EVRGEV++    F  LN+E    G K +ANPRNAA+G LR+L+P     R L F
Sbjct: 170 NIPRRVEVRGEVFMKHGGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTF 229

Query: 239 FVHGLGK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           F +G+G           +E L + +  G PV++ ++       ++ +Y +++  RS L +
Sbjct: 230 FCYGVGLLEGGELPASHWERLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSELGF 289

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+V KVD  +LQ++LG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVAR
Sbjct: 290 DIDGVVVKVDSLALQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVAR 349

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV + G +++NATLHN D I+ L            +++GDRV+V+RAG+VIP++V I+
Sbjct: 350 LEPVAVAGVIVSNATLHNADEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIV 398

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            +ER    QP  FP  CP+C S V R          A  RCTGGL C AQ+ E LKHFVS
Sbjct: 399 ESERPETVQPIVFPVACPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVS 452

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A ++EG+G + +D   + E     ++ PAD+F L      S   +  +   G  S  N
Sbjct: 453 RRALDVEGMGDKIIDQLVEKE----YVKTPADLFRL------SAGSMTGLDRMGPKSAMN 502

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           + +++ K ++ +L RF+++LGIR VG   A +LA ++ S +               D  +
Sbjct: 503 VVNALEKAKSTTLARFLYALGIRDVGESTAANLAAHFGSLEALFAA----------DEDA 552

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI------GRHEKNVSSEIENKK 651
           L+ VP VG I+A  +  F +   N   +  L      +I        + + + S    K 
Sbjct: 553 LLAVPDVGKIVAAHVRHFLEEEHNQTVIRELTDPAGINIHWPEVQVVNAEEIDSPFAGKT 612

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +V TG+L  + R +A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E
Sbjct: 613 VVLTGSLSILSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIAVIDE 672

Query: 712 EQFLFLL 718
            + + LL
Sbjct: 673 AEMIRLL 679


>gi|259907817|ref|YP_002648173.1| NAD-dependent DNA ligase LigA [Erwinia pyrifoliae Ep1/96]
 gi|224963439|emb|CAX54927.1| DNA ligase [Erwinia pyrifoliae Ep1/96]
 gi|283477688|emb|CAY73604.1| DNA ligase [Erwinia pyrifoliae DSM 12163]
          Length = 678

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 238/715 (33%), Positives = 398/715 (55%), Gaps = 51/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  + +++ L   + +++  Y+    P + D+EYD L      +    P+L  S   + 
Sbjct: 1   MESVQDKITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRDLEAQHPELLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G        +V H +P LSL+  ++ E    F  R+    +  DD  I F  E K
Sbjct: 58  PTQRVGAAPLSVFEQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDD--ITFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YEKG+ V AA RGDG +GE+++A +R I  IP  LS +  PE +EVRGEV+
Sbjct: 116 LDGLAVSLLYEKGELVRAATRGDGTTGENITANVRTIRAIPLRLSGDNIPERLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           +    F  +N++  + G+K +ANPRNAA+G LR+L+P     R L FF +GLG       
Sbjct: 176 MPLVGFEQMNEQARSSGQKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     LQ+ +  G PV++ VR  ++   ++ +Y+++++ R TL +DIDG+V KVD  +
Sbjct: 236 PRSHRARLQRFKAWGLPVSDRVRLCHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVLVAGVMVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GDRV+++RAG+VIP+V+ ++      +A+  +F
Sbjct: 356 ATLHNADEIERL-----------GLKIGDRVVIRRAGDVIPQVMSVVETG--DNAREIAF 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R             RCTGGL C AQ+   LKHFVSR A +I+G+G++ 
Sbjct: 403 PTRCPVCGSDVERVEGE------VVARCTGGLICGAQRKGALKHFVSRRALDIDGMGEKI 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D     E     ++ PA++F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 457 IDQLVDKE----YVKNPAELFELTA------GKLTGLDRMGPKSAQNVVNALVKAKQTTF 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGI  VG   A +LA ++ +                 D  +L+ V  VG ++A 
Sbjct: 507 ARFLYALGISEVGEATAANLAAHFGTLDALMAA----------DLDALMAVQDVGKVVAS 556

Query: 611 AIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F     N+  +  L+ +   +    +    + + S    K +V TG+L  + R +A
Sbjct: 557 HVRNFLDEESNLEIIRLLVDKAGVNWPQVMVVKAEEIDSPFAGKTVVLTGSLSILSRDEA 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           ++ +  LGA VS  +S+KTD+++ G+  GSKL KA++LG+ +++E++ + LL + 
Sbjct: 617 KDRLQALGAKVSGSVSKKTDLVVAGEAAGSKLAKARELGIDVIDEQEMIRLLGEK 671


>gi|253701546|ref|YP_003022735.1| DNA ligase, NAD-dependent [Geobacter sp. M21]
 gi|251776396|gb|ACT18977.1| DNA ligase, NAD-dependent [Geobacter sp. M21]
          Length = 668

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 254/708 (35%), Positives = 369/708 (52%), Gaps = 44/708 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A + +  L  EI  H+  YY+   P I D+EYDAL R    +  + PDLA    P
Sbjct: 1   MDKTAAAQRIKWLSSEIERHNRLYYEQDMPEITDAEYDALFRELKELEASHPDLAL---P 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       +V H+ P LSLE  +  +D+  F  R+ RF        I +  E
Sbjct: 58  DSPTGRVGGRPVAKFTQVRHTTPMLSLENAFTDKDIVDFDDRVKRFLGLSGQAEIGYVCE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  + + Y +G     + RGDG  GE+V+  ++ I  IP    +   P ++ VRGE
Sbjct: 118 PKMDGVAVELVYREGLLAIGSTRGDGVVGEEVTQNLKTIKDIPLRLQTEEPPRLLTVRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+    F   N E    G  P+ANPRNAA+G LR+L+      R L+ F +  G+   +
Sbjct: 178 VYLPLEPFRKFNQEREEAGEPPFANPRNAAAGSLRQLDSKITAKRPLSIFCYAPGEVDGV 237

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q   L  +     PVN   +  +   G++ YY+EM   R  LPY+IDG+V KVD F
Sbjct: 238 AFDSQSHFLSTIPTWRIPVNPLTKLVSGVQGVLDYYHEMMEKRDDLPYEIDGVVVKVDRF 297

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ+ LGE++RSPRW I+ KF  +QA+T + DI  Q+GRTG++TPVA LEPVN+ G +++
Sbjct: 298 SLQRDLGEKSRSPRWAIAWKFPPRQATTVVNDIVPQVGRTGVITPVAHLEPVNVSGVMVS 357

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN + ++            +DIR GD V+V+RAG+VIP VV ++V +R        
Sbjct: 358 RATLHNWEEMER-----------KDIRRGDTVVVERAGDVIPAVVQVLVEKRQGSETLLP 406

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C   VVR       +         GL C AQ LER+KHF +R A +I+GLG++
Sbjct: 407 VPQACPVCGGEVVRIPGEVAVR-------CVGLNCPAQALERVKHFAARRAMDIDGLGEK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     +     IR  ADI+ L                 G     NL +SI   +   
Sbjct: 460 FIEQLLNLK----LIRNVADIYRLTEEDFMRF------ERMGKKLAENLLNSIAASKERE 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R IF+LGIRHVG   A+ LA  + S +N A                L  +  VG  +A
Sbjct: 510 LSRLIFALGIRHVGEHTAKLLAGAFGSMENLAAASE----------EELTSIREVGPQVA 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            +I +F+++  N+  +  L +    +    EK V      K  VFTG L+K  R +A++ 
Sbjct: 560 ASIADFFKSEENLEVLRELKEHGV-NPKAEEKRVGGRFTGKTFVFTGALEKFTRDEAKKM 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V   G   +  +S+KTD ++ G + GSKLEKAQQLGV++++E+ FL L
Sbjct: 619 VELEGGHAAGSVSKKTDYVVAGADAGSKLEKAQQLGVRVLSEDDFLEL 666


>gi|307257368|ref|ZP_07539138.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306864218|gb|EFM96131.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 682

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 253/708 (35%), Positives = 401/708 (56%), Gaps = 46/708 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   +   + P  ++
Sbjct: 16  AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ E+L  F+ R+  +  +    ++ F  EPK+DG  
Sbjct: 73  GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKND 197
           ++I Y  G    AA RGDG +GED+++ IR I  IP      N P  +EVRGEV++ +  
Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 191

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFAKGQ 254
           F ALN+  +  G K +ANPRNAA+G LR+L+P    +     N +  G+ ++ +      
Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGAVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L+       T +  +   G  S  N  +SI K +N +L RF+
Sbjct: 475 MERE----LVHTPADLFKLE------HTTLMRLERMGGKSAQNALNSIEKAKNTTLARFL 524

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++ +                  +  L  V  VG+++A  IV 
Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574

Query: 615 FYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+Q P N+  VE L+ +          +   + ++ K +V TGTL ++ R +A+  +   
Sbjct: 575 FWQEPHNVAVVEDLISQGVHWQNVIQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L  + 
Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLVKAQELGVKVLTEQEFIALTGEN 682


>gi|261418603|ref|YP_003252285.1| NAD-dependent DNA ligase LigA [Geobacillus sp. Y412MC61]
 gi|319765418|ref|YP_004130919.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC52]
 gi|261375060|gb|ACX77803.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC61]
 gi|317110284|gb|ADU92776.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC52]
          Length = 670

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 257/717 (35%), Positives = 395/717 (55%), Gaps = 54/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +QA +  + L + +  +   YY   +P + D+EYD L +   AI   +P+L  S   
Sbjct: 1   MDRQQAERRAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELMAIEEQYPELKTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IGG    +  KVTH +P +SL   ++  DLR F  R+      ++     +  E
Sbjct: 58  DSPTQRIGGPPLEAFRKVTHVVPMMSLANAFDEGDLRDFDRRVR-----QEVGEAAYVCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  +R I ++P  L   +   +E RGE 
Sbjct: 113 LKIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLRTIRSLPLRLKEPVS--LEARGEA 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           ++ K  FL LN+E  A G + +ANPRNAA+G LR+L+P    +R L+ +V+GL    E+ 
Sbjct: 171 FMPKASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLYVYGLANAEELG 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   E L  ++ LGF VN   R+      ++++ NE    R  LPY+IDG+V KVD F+
Sbjct: 231 IESHSEALHYLQALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFA 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T L+ I++ +GRTG++TP A LEPV + G  +  
Sbjct: 291 QQRELGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED+I+            +DIR+GD V++K+AG++IP+VV ++V+ R  D  PF  
Sbjct: 351 ATLHNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVM 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  ERL HF SR A NIEGLG++ 
Sbjct: 400 PTHCPECESELVRLDGE------VALRCLNPK-CPAQLRERLIHFASRAAMNIEGLGEKV 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  +   AD++ L + Q         +   G+ S TNL  +I   +  SL
Sbjct: 453 VTQLFN----AGLVHDVADLYRLTKEQLIG------LERMGEKSATNLLAAIEASKQNSL 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR+VGA+ A+ LA+++ + +   +               L+ VP +G+ +A 
Sbjct: 503 ERLLFGLGIRYVGAKAAQLLAEHFETMERLEKATK----------EELMAVPEIGEKMAD 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+ F+  P     +  L         +      E    S    K +V TG L  + R++
Sbjct: 553 SIIAFFSQPEAAELLHELRLYGVNMAYKGPKRAAEAPADSAFAGKTVVLTGKLASMSRNE 612

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+E + +LG  V+  +SR TDI+I G++ GSKLEKAQQLG++I +E +FL  + +  
Sbjct: 613 AKEEIERLGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDESRFLQEISRGK 669


>gi|46143448|ref|ZP_00135242.2| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208768|ref|YP_001053993.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae L20]
 gi|166215385|sp|A3N1V2|DNLJ_ACTP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|126097560|gb|ABN74388.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 5b str. L20]
          Length = 683

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 253/708 (35%), Positives = 399/708 (56%), Gaps = 46/708 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            +L +L Q++  ++  Y+    P++ D+EYD L      +    P+       + P  ++
Sbjct: 17  AQLEALRQKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITV---DSPTQRV 73

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ E+L  F+ R+  +  +    ++ F  EPK+DG  
Sbjct: 74  GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 132

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKND 197
           ++I Y  G    AA RGDG +GED+++ IR I  IP      N P  +EVRGEV++ +  
Sbjct: 133 VSILYVDGVLSQAATRGDGSTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 192

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFAKGQ 254
           F  LN+  +  G K +ANPRNAA+G LR+L+P    +     N +  G+ ++ +      
Sbjct: 193 FEELNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATH 252

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y  +++ R TL YDIDG V KV++  LQ+Q
Sbjct: 253 FERLQWLKSIGIPVNNEIRLATGREQLLAFYANIQAKRPTLGYDIDGTVLKVNDIGLQEQ 312

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 313 LGFISRSPRWAIAYKFPSQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 372

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V ++++ R  +A+   FP+ C
Sbjct: 373 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMDRRPENAKKIEFPTAC 421

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 422 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 475

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L        T +  +   G+ S  N  +SI K +N +L RF+
Sbjct: 476 MERE----LVHTPADLFKL------DHTTLMRLERMGEKSAQNALNSIEKAKNTTLARFL 525

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++ +                  +  L  V  VG+++A  IV 
Sbjct: 526 FALGIRDVGEATAQNLANHFHNLAAIRTAT----------FEQLQAVQDVGEVVANRIVR 575

Query: 615 FYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+Q P N+  VE L+ +          +   + ++ K +V TGTL ++ R +A+  +   
Sbjct: 576 FWQEPHNVAVVEDLISQGVHWQDVIQVEIADNPLKGKNVVLTGTLTQLTRDQAKALLQSF 635

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           G  VS  +S KTD +I G+  GSKL KAQ+LGVKI+ E++F+ L  + 
Sbjct: 636 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILTEQEFIALTGEN 683


>gi|326387612|ref|ZP_08209218.1| DNA ligase, NAD-dependent [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207658|gb|EGD58469.1| DNA ligase, NAD-dependent [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 687

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 281/712 (39%), Positives = 410/712 (57%), Gaps = 33/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+A++   A  EL  L ++I+YHD  Y+    P I D+EYDAL RR   I  AFP L R+
Sbjct: 3   IDAMTEADAANELMRLARQIAYHDRLYHTLDTPEIADAEYDALVRRNAEIEAAFPHLIRA 62

Query: 69  EDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              + P  K+G ++  S L KVTH +  +SL+  +  E++ +F  R+ RF     +  + 
Sbjct: 63  ---DSPSRKVGHDVAASPLSKVTHEVRMMSLDNAFTDEEVEEFAARVRRFLALPAEAEVA 119

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            T E KIDG   ++RYE G+ V AA RGDG  GEDV+A +  IP IP+ LS ++PE+ E+
Sbjct: 120 MTAEDKIDGLSCSLRYEHGRLVRAATRGDGQVGEDVTANVAFIPDIPQHLSGDVPEVFEI 179

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY++K DF ALN      G K +ANPRNAA+G LR+ + +   +R L F  HG G  
Sbjct: 180 RGEVYMAKADFAALNVAQEEKGEKRFANPRNAAAGSLRQKDASVTASRPLRFLAHGWGAH 239

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S + A+ QY+++Q +   G PV+  + +  T   ++++Y  +++ R  LPYDIDG+VYKV
Sbjct: 240 SGLPAQTQYDVMQVIAGWGVPVSPLLVRCATTADMLAHYRAIQAQRPDLPYDIDGVVYKV 299

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D    Q++LG  A++PRW ++HKF  ++A T +  ID+Q+GRTG LTPV RL PV +GG 
Sbjct: 300 DRLDWQERLGFVAKAPRWGMAHKFPAERAETVVEAIDVQVGRTGKLTPVGRLRPVLVGGV 359

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +TN TLHN D I  L            +RVGDRV+++RAG+VIP+V  +    R    +
Sbjct: 360 TVTNVTLHNRDEIARL-----------GVRVGDRVVLQRAGDVIPQV--VDNLTREEARE 406

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            + FP  CP C S  V +            RCTGGL C AQ+ ERLKHFVSR A +I+GL
Sbjct: 407 AYVFPDHCPECGSEAVAEEGE------VDVRCTGGLICPAQRTERLKHFVSRAALDIDGL 460

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ +  FF        +  PADIF L+ R+      I    G+ D SV NL  +I  RR
Sbjct: 461 GEKTIVEFF----ALGWLESPADIFRLKNRRA----DILGREGWKDKSVENLLMAIEARR 512

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
                R +F+LGIRHVG   AR L K +++  +         A + D    L+ +  VG 
Sbjct: 513 APDAARLLFALGIRHVGQVTARDLMKRFVTLPDLRAVAERAHAGDEDARAELLGIDGVGP 572

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++ +A+ EF+  P N    + LL E+SP     E    S +  K +VFTG L+ + R +A
Sbjct: 573 VVVEALGEFFHEPHNRAVWDDLLSELSPPPYIVETRA-SVVAGKTVVFTGKLETMSRDEA 631

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +     LGA  +  +S KTD+++ G   GSKL++A  LG+++++E  +  ++
Sbjct: 632 KAQAEALGARAAGSVSAKTDLVVAGPGAGSKLKQAAALGIEVIDEAAWAEIV 683


>gi|149374973|ref|ZP_01892746.1| DNA ligase, NAD-dependent [Marinobacter algicola DG893]
 gi|149360862|gb|EDM49313.1| DNA ligase, NAD-dependent [Marinobacter algicola DG893]
          Length = 676

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 249/716 (34%), Positives = 387/716 (54%), Gaps = 47/716 (6%)

Query: 12  LSIE--QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           ++            L   I+ H+  YY    P + D+EYD L R    +   +PD+    
Sbjct: 1   MTKASPDVISRAGELRDIITEHNYQYYVLDDPRVPDAEYDRLFRELQDLETQYPDIV--- 57

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG +  +  +V H IP LSL+  ++ E+LR F  R+      K  + I + 
Sbjct: 58  TPDTPTRRVGGSVETTFEEVVHRIPMLSLDNAFSDEELRDFDRRVKDRL--KTGDDIEYV 115

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVR 188
            EPK+DG  +++ YE G    AA RGDG++GED++A IR IP++P  L  +  PE++EVR
Sbjct: 116 CEPKLDGLAVSLHYESGVLTRAATRGDGYTGEDITANIRTIPSVPLRLRGDKVPELVEVR 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KT 246
           GEVY+ +  F ALN  +   G K + NPRNAA+G LR+  PT    R L    + +  + 
Sbjct: 176 GEVYMPREGFEALNRRLANKGEKTFVNPRNAAAGSLRQKKPTVTARRPLELCAYSVALED 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
             +     +E LQ++   GF +N  +R+A      +  YNE+   R++LPY+IDG+V+KV
Sbjct: 236 ESLLPATHWEGLQQVSAWGFRINPEMRRATGAEDCLQAYNELMGKRASLPYEIDGIVFKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  +R+PRW I+ KF  ++  T + D++ Q+GRTG +TPVARL+PV +GG 
Sbjct: 296 NSLALQQQLGFVSRAPRWAIAQKFPAQEELTVIEDVEFQVGRTGAITPVARLKPVFVGGV 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN D I+ L           D R+GD V V+RAG+VIP+VV ++   R  +A+
Sbjct: 356 TVSNATLHNMDEIRRL-----------DARIGDTVFVRRAGDVIPQVVKVVAERRPANAR 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+CQS +V+             RC+GGL C AQ+ E ++H+ SR A +IEGL
Sbjct: 405 EVELPDACPVCQSDIVQIEGE------VVARCSGGLFCPAQRKEAIRHYASRKALDIEGL 458

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D     E     +   AD++ L++   T       +   G+ S  NL D+I++ R
Sbjct: 459 GDKWIDILVDRE----LVNTVADLYLLKKADLTG------LERMGEKSAGNLIDAIDRSR 508

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L +F+++LGIR VG   A+ LA Y+ + ++ ++           D  +L  VP VG 
Sbjct: 509 KPVLWKFLYALGIREVGEATAKGLASYFGTLESISEA----------DEDALQSVPDVGP 558

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I+A  I  F+    N   ++AL                  ++ +  V TG+L  + R  A
Sbjct: 559 IVAGHIRSFFDQTHNQETIQALKDAGVQWQAEEITASQKPLKGETWVLTGSLSGMTRDDA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +  +  LGA V+  +S KT  ++ G+  GSKL KA+ LGV +M+E  F+  L  + 
Sbjct: 619 KSKLESLGAKVAGSVSGKTSCVVAGEAAGSKLTKAENLGVPVMDESAFVDFLATHG 674


>gi|163802586|ref|ZP_02196478.1| NAD-dependent DNA ligase LigA [Vibrio sp. AND4]
 gi|159173669|gb|EDP58488.1| NAD-dependent DNA ligase LigA [Vibrio sp. AND4]
          Length = 670

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 255/713 (35%), Positives = 390/713 (54%), Gaps = 48/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E   ++L  L++ + YH   YY    P I D+EYD + R    I    PDL      
Sbjct: 1   MS-ESVLQQLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPDLVTV--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+      +VTH +P LSL+  ++  +L  F  R          N   +  E
Sbjct: 57  DSPSQRVGGQPLSEFSQVTHEVPMLSLDNAFDDAELDGFHKRAQDRV--VAHNIKQYCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PK+DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L   N P  +EVRGE
Sbjct: 115 PKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTISAIPLKLQGENWPTRLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249
           V++ K  F  LN+     G K + NPRNAA+G LR+L+     +R L+F+ + +G     
Sbjct: 175 VFMPKAGFDKLNELARKKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVEGA 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A   YE   +++  G P+    R  +    + +YY ++   R  L Y+IDG+V KVD+
Sbjct: 235 VLANSHYERFLQIKSWGLPMCPETRCVDNLEEVKAYYRDILVRREALAYEIDGVVIKVDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             +Q++LG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEP+ +GG  +
Sbjct: 295 IVIQERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPIFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            + VGD+V+++RAG+VIP+VV +I   R   A+  
Sbjct: 355 SNATLHNADEIERLQ-----------VMVGDQVVIRRAGDVIPQVVSVIKERRPETAREI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++GLG 
Sbjct: 404 IFPNACPVCGSHVERIEGE------AVTRCTGGLVCQAQRKEALKHFVSRKALDVDGLGD 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L      S   +  +   G  S TN+ +++ K +  
Sbjct: 458 KVIEQLVDRE----MVETPADLFKL------SAGVLTVLDRMGPKSATNVVNALEKSKLT 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA+Y+ +     Q               L+ V  +G ++
Sbjct: 508 TLPRFLYSLGIREVGEATAANLAQYFKNLDAIQQATE----------EQLVDVQDIGVVV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A+ I  F+   +N   V+ LL +    P I   ++     +E K +V TGTL ++ R +A
Sbjct: 558 AKHITTFFSEEKNQAVVQDLLAQGINWPDIASPQEGAERPLEGKTVVLTGTLSQLGRSEA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L L++
Sbjct: 618 KEALQNLGAKVTGSVSKKTDILFAGENAGSKLTKAQELGIEIQTEQDLLNLMK 670


>gi|197117724|ref|YP_002138151.1| NAD-dependent DNA ligase [Geobacter bemidjiensis Bem]
 gi|254781337|sp|B5EIJ0|DNLJ_GEOBB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|197087084|gb|ACH38355.1| DNA ligase, NAD-dependent [Geobacter bemidjiensis Bem]
          Length = 668

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 256/710 (36%), Positives = 372/710 (52%), Gaps = 44/710 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A + +  L  EI  H+  YY+   P I D+EYDAL R    +  ++PDLA    P
Sbjct: 1   MDKTAAAQRIKWLSSEIERHNRLYYEQDMPEITDAEYDALFRELKELEASYPDLAL---P 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       +V H+ P LSLE  +  +D+  F  R+ RF        I +  E
Sbjct: 58  DSPTGRVGGRPVAKFTQVRHTTPMLSLENAFTEKDIVDFDDRMKRFLGLSGAEEIGYVCE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  + + Y  G     + RGDG  GE+V+  ++ I  IP    +   P ++ VRGE
Sbjct: 118 PKMDGVAVELVYRDGLLAIGSTRGDGLVGEEVTQNLKTIKDIPLRLQTEEPPGLLTVRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+    F   N E    G  P+ANPRNAA+G LR+L+      R L+ F +  G+   +
Sbjct: 178 VYLPLEPFRKFNQEREEAGEPPFANPRNAAAGSLRQLDSKITAKRPLSIFCYAPGEVDGV 237

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             + Q + L  +     PVN   R      G++ YYNEM   R  LPY+IDG+V KVD F
Sbjct: 238 AFQSQSDFLSTIPTWRIPVNPLTRLVPGVQGVLDYYNEMMEKRDDLPYEIDGVVVKVDRF 297

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ+ LGE++RSPRW I+ KF  +QA+T + DI  Q+GRTG++TPVA LEPVN+ G +++
Sbjct: 298 SLQRDLGEKSRSPRWAIAWKFPPRQATTVVNDIVPQVGRTGVITPVAHLEPVNVSGVMVS 357

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN + ++            +DIR GD V+V+RAG+VIP VV ++V +R        
Sbjct: 358 RATLHNWEEMER-----------KDIRRGDTVVVERAGDVIPAVVQVLVEKRQGSETLLP 406

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C   VVR       +         GL C AQ LER+KHF +R A +I+GLG++
Sbjct: 407 VPQACPVCGGEVVRIPGEVAVR-------CVGLNCPAQALERVKHFAARRAMDIDGLGEK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     +     IR  ADI+ L                 G     NL +SI   +   
Sbjct: 460 FIEQLLNLK----LIRNVADIYRLTEEDFMQF------ERMGKKLAENLLNSIAASKERE 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R IF+LGIRHVG   A+ LA  + S +N A                L  +  VG  +A
Sbjct: 510 LSRLIFALGIRHVGEHTAKLLASAFGSMENLAAASE----------EELTSIREVGPQVA 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            +I +F+++  N+  +  L +    +    EK V      K  VFTG L+K  R +A++ 
Sbjct: 560 ASIADFFKSEENLEVLRELKEHGV-NPRVEEKRVGGRFTGKTFVFTGALEKFTRDEAKKM 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V   G   +  +S+KTD ++ G + GSKL+KAQQLGV++++E+ FL L+Q
Sbjct: 619 VELEGGHAAGSVSKKTDYVVAGADAGSKLDKAQQLGVRVLSEDDFLELMQ 668


>gi|152981161|ref|YP_001353755.1| DNA ligase (polydeoxyribonucleotide synthase) [Janthinobacterium
           sp. Marseille]
 gi|166215814|sp|A6SZQ8|DNLJ_JANMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|151281238|gb|ABR89648.1| DNA ligase (Polydeoxyribonucleotide synthase) [Janthinobacterium
           sp. Marseille]
          Length = 692

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 248/718 (34%), Positives = 372/718 (51%), Gaps = 47/718 (6%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
            E           + L  E++ H+  Y+    P I D+EYD L R   A+  + P+L   
Sbjct: 18  PEEPDASNPAARAAWLRDELNRHNYSYHVLDNPSIPDAEYDKLFRELQALETSHPELLVF 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P  ++G     +  +VTHS+P LSL   +  ED+  F  R+           I +
Sbjct: 78  ---DSPTQRVGALALSAFPQVTHSVPMLSLGNGFEDEDIIAFDKRVSDGLNST---EIEY 131

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEV 187
             E K DG  I +RYE G  V AA RGDG +GE+V+  IR +  IP    +   P++++V
Sbjct: 132 ATELKFDGLAINLRYEDGILVEAATRGDGATGENVTTNIRTVRAIPLRLHTATPPKVLDV 191

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246
           RGEV + K D   LN      G K +ANPRNAA+G LR+L+      R L FF +G+G  
Sbjct: 192 RGEVMMYKADLAKLNARQRDAGGKEFANPRNAAAGSLRQLDSRITAQRTLRFFAYGIGML 251

Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                      +L     LG PV           G++ +Y  +   R TLPY+IDG+VYK
Sbjct: 252 EGAEMPPSHSALLDWYAELGLPVCAERAVVKGAAGLLEFYKAVGQKRPTLPYEIDGVVYK 311

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+    Q+QLG  +R+PR+ I+HKF  ++A T +  I++Q+GRTG +TPVARL PV +GG
Sbjct: 312 VNRVEQQQQLGFVSRAPRYAIAHKFPAEEALTTVQGIEVQVGRTGAITPVARLAPVLVGG 371

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +TNATLHNED ++            +DI++GD V+V+RAG+VIP+VV  +  +R  DA
Sbjct: 372 VTVTNATLHNEDEVRR-----------KDIQIGDTVIVRRAGDVIPEVVAYVPEKRPVDA 420

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIE 484
           QPF  P+ CP+C S +V+  +       A  RC+G  + C+AQ+   L HFVSR A ++E
Sbjct: 421 QPFVMPTNCPVCNSPIVKLEDE------AIARCSGGWVKCAAQRKGGLLHFVSRRAMDVE 474

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG Q ++           I   AD++ L          +  +    D S  N+  ++ K
Sbjct: 475 GLGDQLVEQLVDK----HIITTAADLYKL------GFRALAELDRMADKSAQNVMAALEK 524

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            ++ +L RFI++LGIRHVG   A+ LA+++ + +   Q               L+ V  +
Sbjct: 525 SKSTTLARFIYALGIRHVGEATAKELARHFGNLEALLQASE----------EQLLEVADI 574

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G ++AQ+I  F  +P N+  +E L            +N       K  V TGTL  + R 
Sbjct: 575 GPVVAQSIRSFLSDPLNMELIEQLQAAGVRWPEHVVENKPKPFAGKTFVLTGTLPTLSRD 634

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +A E +   G  V+  +S+KT  ++ G + GSKL KA++LG+ I++E   L LL  + 
Sbjct: 635 QAAEKIEAAGGKVAGSVSKKTSYVVAGADAGSKLAKAEELGITILDESALLQLLDTHE 692


>gi|313201136|ref|YP_004039794.1| DNA ligase, nad-dependent [Methylovorus sp. MP688]
 gi|312440452|gb|ADQ84558.1| DNA ligase, NAD-dependent [Methylovorus sp. MP688]
          Length = 689

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 261/726 (35%), Positives = 383/726 (52%), Gaps = 54/726 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +      ++  L ++I+ ++  YY    P + DSEYD L R   A+ HA P+L     P+
Sbjct: 10  TSATPEVQIRQLREQINLYNYQYYVLDDPSVPDSEYDKLFRELQALEHAHPELL---TPD 66

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G     +   V H    LSL   +   +L  F  RI           + + +EP
Sbjct: 67  SPTQRVGASPLKAFASVQHRQAMLSLNNAFEESELTAFDKRIRDALGIA---QVEYAVEP 123

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEV 191
           K DG  IT+ YE G FV  A RGDG++GEDVS+ +R I  IP      N P +IEVRGEV
Sbjct: 124 KFDGLAITLTYENGLFVQGATRGDGYTGEDVSSNLRTIRAIPMRLPVENPPALIEVRGEV 183

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249
            + K DF  LN +    G K +ANPRNAA+G LR+L+P    TR L FF +GLG      
Sbjct: 184 LMLKRDFDKLNRQQAERGEKLFANPRNAAAGSLRQLDPAITATRPLMFFAYGLGIAEGVP 243

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                   +  +  L  PV++         G++ YY  + + R  LP+DIDG+VYKV+  
Sbjct: 244 QLSTHAAAMDYLASLRLPVSDQRDTVQGLAGLLDYYARIGAARPNLPFDIDGVVYKVNSI 303

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q +LG  +R+PRW ++HKF  ++A T +  ID+Q+GRTG +TPVARL+PV +GG  +T
Sbjct: 304 AQQNELGFVSRAPRWAVAHKFPAQEALTEIQAIDVQVGRTGAITPVARLKPVFVGGVTVT 363

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN+D I             +D+RVGD V V+RAG+VIP+VV +++ +R  D   + 
Sbjct: 364 NATLHNQDEIDR-----------KDVRVGDTVSVRRAGDVIPEVVAVVLEKRPADTVAYR 412

Query: 430 ----FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                   CP+C S V+R  +       A  RCTGGL CSAQ+ + + HF SR A +IEG
Sbjct: 413 LLEAINHQCPVCGSHVIRQEDE------AVARCTGGLFCSAQRKQAVLHFASRRAIDIEG 466

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++ +D           I   ADI+ L          + ++    + S  N+ D++   
Sbjct: 467 LGEKLVDQLVD----GAHIHTLADIYRL------DLATLSSLDRMAEKSAQNILDALQAS 516

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  +L RFI++LGIR+VG   A+ LA+Y+ S Q               D   L +VP VG
Sbjct: 517 KATTLARFIYALGIRNVGEATAKDLARYFGSLQALLAA----------DIEQLQQVPDVG 566

Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
            I+A++I +F   P N   ++ L    +  +           +  K LV TGTL  + R 
Sbjct: 567 PIVAESIRQFLSEPHNQQVIQDLQDVGLHWTESDGAGTQQGVLTGKTLVLTGTLPTMSRD 626

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A+  +   G  V+  +S+KTD ++ G+  GSKL KAQ+LGV +++E   L LL+    +
Sbjct: 627 QAKALIEAAGGKVAGSVSKKTDFVVAGEEAGSKLTKAQELGVAVIDENGLLALLEDKQAS 686

Query: 725 LRIHDD 730
              HDD
Sbjct: 687 ---HDD 689


>gi|261253653|ref|ZP_05946226.1| DNA ligase [Vibrio orientalis CIP 102891]
 gi|260937044|gb|EEX93033.1| DNA ligase [Vibrio orientalis CIP 102891]
          Length = 669

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 247/707 (34%), Positives = 391/707 (55%), Gaps = 47/707 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + +++L+ L + + YH   YY    P I D+EYD L R    +    P+L      + P 
Sbjct: 4   EIQEKLNQLRETLHYHGVKYYVEDNPEIPDAEYDRLMRDLMELESQHPELM---SIDSPS 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG        V H IP LSL+  ++  +L  F  R+         +   F  EPK+D
Sbjct: 61  QRVGGAPLDGFGSVKHEIPMLSLDNAFDDGELESFHKRMKDRIPSATFDV--FCCEPKLD 118

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194
           G  +++ YE G  V AA RGDG +GE+++  +R I  IP  L     P  IEVRGEV++ 
Sbjct: 119 GLAVSLLYENGVLVQAATRGDGATGENITENVRTIKAIPLKLQGEGWPARIEVRGEVFMP 178

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IFAK 252
           K  F  LN+  +  G K + NPRNAA+G LR+L+     TR L+F+ + +G       + 
Sbjct: 179 KAGFDKLNELALKKGDKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVEGAELSS 238

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             Y+   +++  G P+    +Q ++   + +YY ++   R +L Y+IDG+V KVD  +LQ
Sbjct: 239 SHYQRFLQLKGWGLPMCPETKQVSSLDDVKAYYQDILERRESLTYEIDGVVIKVDNIALQ 298

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++NAT
Sbjct: 299 EQLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNAT 358

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+ L            + VGD V+++RAG+VIP++V ++   R  +A+   FP 
Sbjct: 359 LHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVSERRPENAREIVFPE 407

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C+S+V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG++ ++
Sbjct: 408 NCPVCKSQVERVEGE------AVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGEKVIE 461

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                E     +  PAD+F L      S   I  +   G  S  N+ D++NK +  +L R
Sbjct: 462 QLVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVDALNKSKETTLPR 511

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F++SLGIR VG   A +LA+++ +            A    +  +L+ V  +G+I+A  I
Sbjct: 512 FLYSLGIREVGEATAANLAQHFKTLD----------AVKIANHEALVEVQDIGEIVASHI 561

Query: 613 VEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           + F+   +N+  ++ L+ +      +   +++    +  K +V TG+L ++ R  A+  +
Sbjct: 562 IAFFAQDKNLTVIDDLILQGVHWSDVEEKDESTPQPLAGKTVVLTGSLSQLTRSDAKAAL 621

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  EE  + L
Sbjct: 622 QNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIRTEEDLISL 668


>gi|190150622|ref|YP_001969147.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|307263969|ref|ZP_07545570.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|254781246|sp|B3H275|DNLJ_ACTP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189915753|gb|ACE62005.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|306870658|gb|EFN02401.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 682

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 253/708 (35%), Positives = 401/708 (56%), Gaps = 46/708 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   +   + P  ++
Sbjct: 16  AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ E+L  F+ R+  +  +    ++ F  EPK+DG  
Sbjct: 73  GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKND 197
           ++I Y  G    AA RGDG +GED+++ IR I  IP      N P  +EVRGEV++ +  
Sbjct: 132 VSILYVDGVLNQAATRGDGSTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 191

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFAKGQ 254
           F ALN+  +  G K +ANPRNAA+G LR+L+P    +     N +  G+ ++ +      
Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGAVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A+   FP+ C
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S VVR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++  
Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + E     +  PAD+F L+       T +  +   G  S  N  +SI K +N +L RF+
Sbjct: 475 MERE----LVHTPADLFKLE------HTTLMRLERMGGKSAQNALNSIEKAKNTTLARFL 524

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG   A++LA ++ +                  +  L  V  VG+++A  IV 
Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574

Query: 615 FYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+Q P N+  VE L+ +          +   + ++ K +V TGTL ++ R +A+  +   
Sbjct: 575 FWQEPHNVTVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++F+ L  + 
Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLTKAQELGVKVLTEQEFIALTGEN 682


>gi|89900985|ref|YP_523456.1| DNA ligase [Rhodoferax ferrireducens T118]
 gi|123397178|sp|Q21WC8|DNLJ_RHOFD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|89345722|gb|ABD69925.1| DNA ligase, NAD-dependent [Rhodoferax ferrireducens T118]
          Length = 690

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 261/712 (36%), Positives = 389/712 (54%), Gaps = 50/712 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L + +  H   YY    P I D+EYD + +   AI    P+L     P+ P  ++GG
Sbjct: 19  VAQLRRALHEHAHHYYVEDAPTIPDAEYDRMFQELQAIEAQHPELI---TPDSPTQRVGG 75

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKDDNS-IFFTLEPKIDGT 137
                   V H++P LS+    + E    R F TR+ R     +    + +  EPK DG 
Sbjct: 76  RALEQFASVRHAVPMLSIRTETDTEASGARNFDTRVRRELGLDEAAPAVAYVAEPKFDGL 135

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + +RYE G  V AA RGDG  GEDV+  +R I  IP  L  + P I+EVRGEVY+ ++D
Sbjct: 136 AMNLRYESGILVQAATRGDGEVGEDVTQNVRTIGQIPLRLPADAPSILEVRGEVYMRRDD 195

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF-----A 251
           F  LN++  A G+K + NPRNAA+G +R+L+P     R L+FF +GLG+ +         
Sbjct: 196 FEKLNEQQRARGQKTFVNPRNAAAGAVRQLDPAIAAQRPLSFFAYGLGEVTPEQAGGPAF 255

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              YE+LQ ++  GFPV+  V  A     +V+YY  +   R  LP+DIDG+VYKV+  +L
Sbjct: 256 GTHYELLQALKTWGFPVSALVGLAQGATELVAYYESIARQRDALPFDIDGVVYKVNSLAL 315

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+++G   R PRW ++HKF  ++  T +LDID+Q+GRTG LTPVA+L PV +GG  +TNA
Sbjct: 316 QRRMGFVTREPRWAVAHKFPAQEQFTTVLDIDVQVGRTGKLTPVAKLAPVFVGGVTVTNA 375

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED  +            +D+RVGD V+V+RAG+VIP+VV +++++R P A  F+ P
Sbjct: 376 TLHNEDEARR-----------KDVRVGDTVIVRRAGDVIPEVVSVLLDKRQPGATEFTMP 424

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S  VR+           +RCTGGL CSAQ+ + + HF  R A  +EGLG++ +
Sbjct: 425 RQCPVCGSAAVREEGE------VDYRCTGGLFCSAQRKQAILHFAQRRAVEVEGLGEKLV 478

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D           IRI  D++ L        T + ++    D S  N+  ++ K +  +L 
Sbjct: 479 DQLVD----GHVIRILPDLYRL------GLTALASLDRMADKSAQNILQALEKSKQTTLP 528

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF+F LGIRHVG   A+ LA+++ S                     L++V  +G I+AQ+
Sbjct: 529 RFLFGLGIRHVGEATAKELARHFGSLDAVMDA----------SLEQLLQVNDIGPIVAQS 578

Query: 612 IVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +  F+  P N   VE L    V+   G       + +  K  V TGTL  + R +A++ +
Sbjct: 579 LRTFFDQPHNREVVEQLRACGVTWQEGPPAPVTPTPLSGKTFVITGTLPSMSRDEAKDLI 638

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
              G  V+  +S+KT  ++ G   GSKL KAQ+LGV +++E     LL  ++
Sbjct: 639 EAAGGKVAGSVSKKTTFVVAGTEAGSKLTKAQELGVAVLDEAGLKELLDGHS 690


>gi|254448715|ref|ZP_05062173.1| DNA ligase, NAD-dependent [gamma proteobacterium HTCC5015]
 gi|198261723|gb|EDY86010.1| DNA ligase, NAD-dependent [gamma proteobacterium HTCC5015]
          Length = 673

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 244/707 (34%), Positives = 370/707 (52%), Gaps = 46/707 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++ + SL +++  H   YY   +P I D+EYD L R   ++   +P+   S   + P  
Sbjct: 7   IQQHIDSLREQLHQHAHAYYVLDEPSIPDAEYDRLFRELQSLEAQYPE---SHSDDSPTQ 63

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G     +   V H +P LSL  +++ ++L  F  R+         + + +  EPK+DG
Sbjct: 64  RVGAAPLDAFVSVEHEVPMLSLGNVFSDDELVAFDQRLRERLD--YPSELEYAAEPKLDG 121

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR--VLSLNIPEIIEVRGEVYIS 194
             I++ YE G  V  A RGDG  GEDV+  I+ I +IP       + P+ +EVRGEVY+ 
Sbjct: 122 LAISLLYEDGVLVRGATRGDGSVGEDVTQNIKTIHSIPLRLPKRGDWPKRLEVRGEVYMP 181

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAKG 253
           K  F A+N +    G K +ANPRNAA+G LR+L+         + + + +G         
Sbjct: 182 KAGFEAMNAKAREQGDKVFANPRNAAAGSLRQLDSRIAASRPLDMYCYSVGVFEGELPAT 241

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E L  +   GF +           G   YY ++   R TLPY+IDG+VYKV+   LQ 
Sbjct: 242 HSETLAMLGRWGFRICPESAVVTGASGCAEYYQQIGRARDTLPYEIDGVVYKVNSLKLQG 301

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  AR+PRW  +HKF   +  T L D++ Q+GRTG LTPVARLEPVN+ G +++NATL
Sbjct: 302 DLGFVARAPRWATAHKFPPSEELTVLQDVEFQVGRTGALTPVARLEPVNVAGVVVSNATL 361

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D +K            +D+R+GD V+V+RAG+VIP+VV  ++  R  +A     PS 
Sbjct: 362 HNMDEVKR-----------KDVRIGDTVIVRRAGDVIPEVVKSVLERRPKEAPAIVMPSH 410

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S V+R          A  RC+GGL CSAQ+ E +KHF SR A +I+G+G + +D 
Sbjct: 411 CPVCGSDVIRPEGE------AVARCSGGLYCSAQRREAIKHFASRKALDIDGVGDKLIDQ 464

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     I    D+F L   Q  S      +   G+ S T   +++   +  +L +F
Sbjct: 465 LVDGE----LIDHVDDLFHLTVEQLAS------LERMGEKSATKAIEALENAKRTTLPKF 514

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGIR VG   AR+LA ++   +   Q               L+ V  VG I+A  + 
Sbjct: 515 LFALGIREVGEVTARNLAMHFGDLEPIMQASE----------DDLLAVADVGPIVAAHVK 564

Query: 614 EFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            F++ P NI  ++ LL+           +   + ++    V TGT   ++R +A++ +  
Sbjct: 565 SFFEQPHNIEVIDKLLEAGFVWEPIEVAEQKEAVLDGHTYVLTGTFTAMKRDEAKQQLLA 624

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           LGA VS  +S+KT  +  GD+PGSK++KA +L V +  EE  L LL+
Sbjct: 625 LGAKVSGSVSKKTTAVFAGDSPGSKVDKAAELEVPVKTEEDLLELLK 671


>gi|119472555|ref|ZP_01614603.1| NAD-dependent DNA ligase [Alteromonadales bacterium TW-7]
 gi|119444879|gb|EAW26179.1| NAD-dependent DNA ligase [Alteromonadales bacterium TW-7]
          Length = 672

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 247/714 (34%), Positives = 387/714 (54%), Gaps = 46/714 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S     ++++ L   +  H+  YY    P I D+EYD L R   A+    P+       
Sbjct: 1   MS-SSISEQINHLRTLLEQHNYNYYVLDTPSIPDAEYDRLLRELSALETQNPEFL---SA 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG       +V H +P LSL+  ++ ++   F  RI       D   + F  E
Sbjct: 57  DSPTQKVGGAALSKFEQVAHQVPMLSLDNAFSEDEFTGFNRRIKERLMSID--ELTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK+DG  ++I Y  G  V AA RGDG +GE+++  ++ I  +P  L  + P+ +EVRGEV
Sbjct: 115 PKLDGLAVSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKELEVRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEI 249
           ++    F  LN+E    G K + NPRNAA+G LR+L+      R L F+ +  G      
Sbjct: 175 FMDSAGFEKLNNEAQKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGS 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +  ++ L+K+   G P+    +        + YY+++ + RS L Y+IDG+V KV++ 
Sbjct: 235 IPEDHFQQLEKLTDWGLPLCPETKLVEGPQAALDYYDDILTRRSELKYEIDGVVIKVNKK 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  AR+PRW I++KF  ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  ++
Sbjct: 295 ALQERLGFVARAPRWAIAYKFPAQEEVTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I  L            ++VGD V+++RAG+VIP++  +++  R  DA+   
Sbjct: 355 NATLHNGDEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPTDARDIV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FPS CPIC S V +          A  RCTGGL C AQ+ + +KHF SR A +I+GLG +
Sbjct: 404 FPSACPICDSHVEKVEGE------AVARCTGGLVCPAQRKQAIKHFASRKALDIDGLGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D     E     I+ PAD+F L++         E++   G  S  NL  ++N+ +  +
Sbjct: 458 IVDQLVDRE----LIKTPADLFILKQ------GHFESLERMGPKSAKNLVTALNEAKATT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L +F++SLGIR  G   A++LA ++L+ +N                 SL +V  VGDI+A
Sbjct: 508 LAKFLYSLGIREAGEATAQNLANHFLTLENIISA----------SVESLTQVSDVGDIVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQE 668
             +  F+    N+  V AL+++          +     +     V TGTL  + R+ A+ 
Sbjct: 558 SHVRGFFDEEHNLAVVNALIEQGVHWPALSAPSEDEQPLAGLTYVLTGTLNTLNRNDAKA 617

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            + QLGA VS  +S KTD ++ G+  GSKL KAQ LG+ ++ E+  + LL+++N
Sbjct: 618 RLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDVLTEDGLIELLEKHN 671


>gi|56460801|ref|YP_156082.1| NAD-dependent DNA ligase [Idiomarina loihiensis L2TR]
 gi|81362279|sp|Q5QUK1|DNLJ_IDILO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56179811|gb|AAV82533.1| NAD-dependent DNA ligase [Idiomarina loihiensis L2TR]
          Length = 670

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 251/710 (35%), Positives = 389/710 (54%), Gaps = 46/710 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +   + +  LEQ ++ ++  YY+  +P + D+EYD L R    +    PDL  ++    P
Sbjct: 3   QSVHQRMQELEQLLNRYNQEYYENDEPSVPDAEYDRLFRELKTLETEHPDLKSAQ---SP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K+GG+       V H +P LSL+  +++++   F  R+ +      + ++ F  EPK+
Sbjct: 60  TMKVGGKPLGQFRSVEHEVPMLSLDNAFSVDEFEAFSKRVEQRLD--TNQTVTFCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++ YE G  V  A RGDG SGED++  ++ I  +P  LS ++PE +EVRGEV + 
Sbjct: 118 DGAAVSLLYENGLLVRGATRGDGQSGEDITENVKTIRNVPLKLSGDVPERLEVRGEVVMP 177

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF--A 251
              F   N++      K +ANPRNAA+G LR+L+      R L+F+ + LG  SE     
Sbjct: 178 LGAFERFNEQARQREEKVFANPRNAAAGSLRQLDSRITAKRPLHFYAYSLGLISETTQLP 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              ++ L +++  G PVN  ++  ++  G   YY  + + R TL YDIDG+V+KVD   L
Sbjct: 238 DSHHQRLLQLKDWGLPVNIEIKTVDSVQGCDDYYEAILARRDTLNYDIDGVVFKVDSIRL 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  AR+PRW I+ KF  ++  T +  +D Q+GRTG +TPVARLEPVN+GG  ++NA
Sbjct: 298 QQDLGFVARAPRWAIARKFPAQEQLTTITGVDFQVGRTGAITPVARLEPVNVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            +R+GD V ++RAG+VIP+VV +I ++R  + +   FP
Sbjct: 358 TLHNADEIERL-----------GVRIGDCVSIRRAGDVIPQVVSVIKDKRPENTKAIEFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CPICQS + R          A  RCTGGL C+AQ+ E +KHF SR A +I+GLG + +
Sbjct: 407 QHCPICQSDIERVEGE------AVARCTGGLYCAAQRKEAIKHFASRKAMDIDGLGDKIV 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   + +     I+ PAD++ L + +  +      +   G  S  NL ++I   +  +L 
Sbjct: 461 EQLVERD----WIKSPADLYRLSKAELAT------LPRMGAKSAENLRNAIKATQETTLA 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFI++LGIR VG   A +LA ++ +                 +   L  VP VG ++A+ 
Sbjct: 511 RFIYALGIREVGEATANALANHFKNLDALIAA----------ESEQLQEVPDVGAVVAKH 560

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYV 670
           IV F+    N   V  L + +S   G    +V S  +     V TGTL  + R +A+  +
Sbjct: 561 IVAFFHEAHNQQVVAELREFISWPEGEEASSVQSDRLSGNTYVITGTLSTMTRDEAKSAL 620

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             LGA V++ +S+KT  ++ G+N GSKL KAQ LG+ I++E     LL  
Sbjct: 621 EALGAKVASSVSKKTTALVAGENAGSKLTKAQSLGLDILDENALAELLSD 670


>gi|89094416|ref|ZP_01167356.1| DNA ligase [Oceanospirillum sp. MED92]
 gi|89081308|gb|EAR60540.1| DNA ligase [Oceanospirillum sp. MED92]
          Length = 674

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 260/715 (36%), Positives = 401/715 (56%), Gaps = 47/715 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
              + L  L  ++++H+  YY    P + D+EYD L R    +    P+L      + P 
Sbjct: 2   SIEQHLQQLRDQLNHHNYQYYVLDDPEVPDAEYDRLFRELKKLESDNPELI---TEDSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G     +  +V+H +P LSL+  +N ED+ +F  RI      ++  +I +  EPK+D
Sbjct: 59  QRVGSTPLSAFSQVSHELPMLSLDNAFNDEDMEEFDRRIKDRLNMQE--TISYACEPKLD 116

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           G  +++ YE+G  V  A RGDG +GED++  +R IPTIP  L+  N P+ +EVRGE+Y+ 
Sbjct: 117 GIAVSLLYEQGLLVRGATRGDGSTGEDITQNVRTIPTIPLKLTGDNFPDRLEVRGEIYMP 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IFAK 252
           K  F ALND+  A G+K + NPRNAA+G LR+L+     +R L    + +G       A 
Sbjct: 177 KAGFDALNDKARATGQKTFVNPRNAAAGSLRQLDSRITASRPLEMCSYSVGVVEGGALAG 236

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E+L +++  GF +N  +       G + YY  +  +R TLPY+IDG+V+KVD+  LQ
Sbjct: 237 KHSEILAQLKEWGFRLNPLLESVEGVAGCLDYYRRISELRDTLPYEIDGVVFKVDQLELQ 296

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  +R+PRW I+HKF  ++  T +  I+ Q+GRTG +TPVARLEPV +GG  ++NAT
Sbjct: 297 QRLGFVSRAPRWAIAHKFPAQEELTSIRSIEFQVGRTGAVTPVARLEPVFVGGVTVSNAT 356

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+ L           D+R GD V+++RAG+VIP+VV ++  +R  D +    P 
Sbjct: 357 LHNMDEIERL-----------DVRAGDTVVIRRAGDVIPQVVRVLHEKRPADTEAVIIPD 405

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CPIC+S++ R          A  RC+GGL C AQ+ E LKHF SR A +I+GLG + ++
Sbjct: 406 ACPICESKIERIEGE------AVARCSGGLYCEAQRKEALKHFASRKAMDIDGLGDKLIE 459

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      +  PAD++ LQ+      T++  +   G  S  NL ++I   RN  L R
Sbjct: 460 MLVD----LDMVHNPADLYALQQ------TELARLERMGPKSAENLVNAIQASRNTELPR 509

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+++LGIR VG   ARSLA ++L      +              +L+ VP VG I+A+ I
Sbjct: 510 FLYALGIREVGEATARSLAMHFLDLPALIEASE----------EALLEVPDVGPIVAKHI 559

Query: 613 VEFYQNPRNICAVEALLKEVSPSIG--RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
             F+Q   NI  ++AL ++   S      +   S  I  +  V TG L+++ R +A+ Y+
Sbjct: 560 KSFFQQSHNIEVLDALREKAGVSWSVLETKDEESQPISGETWVLTGKLEQMGRSEAKNYL 619

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            +LGA V+  +S KTD ++ G   GSKL+KA +LG+K M+E+ F+  L +    +
Sbjct: 620 LELGAKVAGSVSAKTDCVVAGPGAGSKLKKATELGIKTMDEDSFVSFLAEQGINI 674


>gi|322513636|ref|ZP_08066733.1| NAD-dependent DNA ligase LigA [Actinobacillus ureae ATCC 25976]
 gi|322120561|gb|EFX92462.1| NAD-dependent DNA ligase LigA [Actinobacillus ureae ATCC 25976]
          Length = 681

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 255/719 (35%), Positives = 401/719 (55%), Gaps = 51/719 (7%)

Query: 9   IEALSIEQARK-----ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           +  LS  QA+      +L +L Q++  ++  Y+    P++ D+EYD L      +    P
Sbjct: 1   MPLLSQMQAQADTTFAQLEALRQKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHP 60

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           +   +   + P  ++G +      +VTH IP LSL+  ++ EDL  F+ R+  +  +   
Sbjct: 61  EWITA---DSPTQRVGAKPLDGFAQVTHEIPMLSLDNAFSDEDLDSFLRRMESYISENPL 117

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIP 182
            S+ F  EPK+DG  ++I Y  G    AA RGDG +GED+++ IR I  IP      N P
Sbjct: 118 -SLAFCCEPKLDGLAVSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPP 176

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFF 239
             +EVRGEV++ +  F  LN+  +    K +ANPRNAA+G LR+L+P    +     N +
Sbjct: 177 ARLEVRGEVFMPQKGFEELNERALEKSEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAY 236

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
             G+ ++ +      +E LQ ++ +G PVNN +R       ++++Y ++++ R TL YDI
Sbjct: 237 GIGVYESDDELPATHFERLQWLKSIGIPVNNEIRLVTGHEQLLAFYADIQAKRPTLGYDI 296

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG V KV++  LQ+QLG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LE
Sbjct: 297 DGTVLKVNDIGLQEQLGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLE 356

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  ++NATLHN D I+ L            I +GD V+++RAG+VIP++V +++ 
Sbjct: 357 PVFVAGVTVSNATLHNGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVME 405

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R  +A+   FP+ CP+C+S VVR          A  RCTGGL C AQ+ E LKHFVSR 
Sbjct: 406 RRPENAEKIEFPTACPVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRK 459

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +I+G+G++ ++     E     +  PAD+F L        T +  +   G  S  N  
Sbjct: 460 AMDIDGVGEKLIEQLMDRE----LVHTPADLFKL------DHTTLMRLDRMGKKSAQNAL 509

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           +SI K +N +L RF+F+LGIR VG   A++LA ++ + +                +  L 
Sbjct: 510 NSIEKAKNTTLARFLFALGIRDVGEATAQNLANHFHNLEAIRMAT----------FEQLQ 559

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTL 658
            V  VG+++A  IV F+Q P N+  VE L+ +          +   + ++ K +V TGTL
Sbjct: 560 EVQDVGEVVANRIVRFWQEPHNVAVVEDLIAQGVYWQDVVQVEIADNPLKGKNVVLTGTL 619

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            ++ R +A+  +   G  VS  +S KTD +I G+  GSKL KAQ+LGVK++ E++ + L
Sbjct: 620 TQLTRDQAKALLQSFGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQELVDL 678


>gi|325982988|ref|YP_004295390.1| DNA ligase, NAD-dependent [Nitrosomonas sp. AL212]
 gi|325532507|gb|ADZ27228.1| DNA ligase, NAD-dependent [Nitrosomonas sp. AL212]
          Length = 677

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 252/715 (35%), Positives = 389/715 (54%), Gaps = 51/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IE+ R  +  L  EI  H+  YY    P I D+EYD L R    I   +P L  +   + 
Sbjct: 5   IEKIRHRIQDLRAEIELHNYRYYVLDTPTIPDAEYDRLLRELQHIEQDYPQLITA---DS 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H  P LSL   ++  ++  F  R+         +++ + +EPK
Sbjct: 62  PTQRVGAAPLKAFSQVVHRRPMLSLSNAFDDAEVEAFDRRVCEGL---AVDNVEYAVEPK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVY 192
            DG  +++ YE G F   A RGDG++GE+++  +R I +IP     LN P  +EVRGEV 
Sbjct: 119 FDGLAVSLCYENGIFKTGATRGDGYTGENITLNLRTIRSIPLSLPVLNPPSWLEVRGEVL 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249
           + + DFLALN    A G K +ANPRNAA+G LR+L+P    TR L FF +G+G  +   +
Sbjct: 179 MLRADFLALNQRQSAKGEKEFANPRNAAAGSLRQLDPGITATRRLTFFAYGVGEYQDCHM 238

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                  ++  +  L FP+            +++YY  ++  R  LPYDIDG+VYKV+  
Sbjct: 239 PLDKHSHVMAYLASLHFPIAKEGGVVKGLQELLAYYQTIEVQRVRLPYDIDGVVYKVNSL 298

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q++LG  +R+PR+ ++HKF  ++A T+L  I+IQ+GRTG LTPVARL+PV +GG  +T
Sbjct: 299 AQQERLGFVSRAPRFALAHKFPAQEAITQLSGIEIQVGRTGALTPVARLKPVFVGGVTVT 358

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I+            +D+R+GD V+V+RAG+VIP++V +I+ +R  D Q F 
Sbjct: 359 NATLHNADEIER-----------KDVRIGDTVIVRRAGDVIPEIVSVILEKRPVDTQVFV 407

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C ++ VR ++       A  RCTGGL C AQ+ + + HF SR A +I    + 
Sbjct: 408 MPEHCPVCGAKAVRLVDE------AVSRCTGGLFCPAQRKQAILHFASRRAMDI----EG 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
             D   +       IR PAD++ L          + ++    + S  N+  +I K ++ +
Sbjct: 458 LGDKLVEQMVDRAIIRTPADLYKL------GLGALADLERMAEKSAGNILRAIEKSKHTT 511

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFI++LGIR+VG   A+ LA +  S     +  +            L ++P VG ++A
Sbjct: 512 LARFIYALGIRNVGEATAKDLAAHCGSLDRLIEAGS----------ERLQQIPDVGPVVA 561

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSEIENKKLVFTGTLQKIQRHK 665
           Q+I +F+    N   +E L             +V    +  ++ K  V TGTL  + R +
Sbjct: 562 QSIADFFAEAHNREVIEQLRACGVYWNEHEGISVLAGEARPLQGKTFVLTGTLPIMSREE 621

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+E +  LG  VS  +S+KTD ++VG +PGSK +KA  LG+ +++E   L LLQ+
Sbjct: 622 AKEKIELLGGKVSGSVSKKTDYVVVGADPGSKYDKALSLGIAVLDEAGLLELLQE 676


>gi|209522379|ref|ZP_03270993.1| DNA ligase, NAD-dependent [Burkholderia sp. H160]
 gi|209497185|gb|EDZ97426.1| DNA ligase, NAD-dependent [Burkholderia sp. H160]
          Length = 688

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 252/714 (35%), Positives = 383/714 (53%), Gaps = 49/714 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
               + L  E+   +  YY   +P + D+EYD L +  + I    PDL     P+ P  +
Sbjct: 15  ADRAAWLRAELERANYAYYVLDQPDLPDAEYDKLFKELERIEAEHPDLIV---PDSPTQR 71

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS---IFFTLEPKI 134
           +GGE       V H  P LSL   +  ED+  F  RI              + +  E K 
Sbjct: 72  VGGEAASGFEPVVHDQPMLSLNNGFADEDIVAFDKRIGDALGNNASEPAVPVDYAAELKF 131

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-EVRGEVYI 193
           DG  I++RY  G FV A+ RGDG +GE+V+  +R I +IP  L       + +VRGEV +
Sbjct: 132 DGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLKLKGKRVPRVLDVRGEVLM 191

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFA 251
            K DF  LN+   A  ++ +ANPRNAA+G LR+L+      R L+FF +G+G        
Sbjct: 192 FKRDFERLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLEGIEMP 251

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E+L   + +G PVN+         G++ +++ +   R  LPYDIDG+VYKV+    
Sbjct: 252 ATHSELLDWYKEMGLPVNSERAVVQGAEGLLGFFHAVGEKRDRLPYDIDGVVYKVNRRDE 311

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  +R+PR+ ++HKF  ++A TRL+ ID+Q+GRTG +TPVARLEPV +GGA +TNA
Sbjct: 312 QETLGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEPVFVGGATVTNA 371

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA+ F  P
Sbjct: 372 TLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAREFVMP 420

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S + R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +
Sbjct: 421 TQCPVCGSSIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKII 474

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D   +       +R PAD+F L          +  +  F + S  NL DS+ K ++ +L 
Sbjct: 475 DQLVEQN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLA 524

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFI++LGIRHVG   A+ LAK++ S                     L+ V  VG ++A++
Sbjct: 525 RFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SLEELLEVNDVGPVVAES 574

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           I +F+    N   +E L      +        K     +  + +V TGTL  + R  A+E
Sbjct: 575 IHQFFAEDHNRTVIEQLRAPGKVAWPEGPPAPKAPQGVLVGQTVVLTGTLPNLSREDAKE 634

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +   GA V+  +S+KT  ++ G + GSKL KA++LG+ +++E+    LL+ ++
Sbjct: 635 MLEAAGAKVAGSVSKKTSYVVAGADAGSKLAKAEELGIPVLDEDGMRKLLEGHS 688


>gi|253999028|ref|YP_003051091.1| DNA ligase, NAD-dependent [Methylovorus sp. SIP3-4]
 gi|253985707|gb|ACT50564.1| DNA ligase, NAD-dependent [Methylovorus sp. SIP3-4]
          Length = 699

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 260/726 (35%), Positives = 384/726 (52%), Gaps = 54/726 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +      ++  L ++I+ ++  YY    P + DSEYD L R   A+ HA P+L     P+
Sbjct: 20  TFATPEVQIRQLREQINLYNYQYYVLDDPSVPDSEYDRLFRELQALEHAHPELL---TPD 76

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G     +   V H    LSL   +   +L  F  RI           + + +EP
Sbjct: 77  SPTQRVGASPLKAFASVQHRQAMLSLNNAFEEGELTAFDKRIRDALGIA---QVEYAVEP 133

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEV 191
           K DG  IT+ YE G FV  A RGDG++GEDVS+ +R I  IP      N P +IEVRGEV
Sbjct: 134 KFDGLAITLTYENGLFVQGATRGDGYTGEDVSSNLRTIRAIPMRLPVENPPALIEVRGEV 193

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249
            + K DF  LN +    G K +ANPRNAA+G LR+L+P    TR L FF +GLG      
Sbjct: 194 LMLKRDFDKLNRQQAERGEKLFANPRNAAAGSLRQLDPAITATRPLMFFAYGLGIAEGVP 253

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                   +  +  L  PV++         G++ YY  + + R  LP+DIDG+VYKV+  
Sbjct: 254 QLSTHAAAMDYLASLRLPVSDQRDTVQGLAGLLDYYTRIGAARPNLPFDIDGVVYKVNSI 313

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q +LG  +R+PRW ++HKF  ++A T +  ID+Q+GRTG +TPVARL+PV +GG  +T
Sbjct: 314 AQQNELGFVSRAPRWAVAHKFPAQEALTEIQAIDVQVGRTGAITPVARLKPVFVGGVTVT 373

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN+D I             +D+RVGD V V+RAG+VIP+VV +++ +R  D   + 
Sbjct: 374 NATLHNQDEIDR-----------KDVRVGDTVSVRRAGDVIPEVVAVVLEKRPADTVAYR 422

Query: 430 ----FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                   CP+C S V+R  +       A  RCTGGL CSAQ+ + + HF SR A +IEG
Sbjct: 423 LLEAINHQCPVCGSHVIRQEDE------AVARCTGGLFCSAQRKQAVLHFASRRAIDIEG 476

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++ +D           I   ADI+ L          + ++    + S  N+  +++  
Sbjct: 477 LGEKLVDQLVD----GAHIHTLADIYRL------DLATLSSLDRMAEKSAKNIIKALDAS 526

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  +L RFI++LGIR+VG   A+ LA+Y+ S Q               D   L +VP VG
Sbjct: 527 KATTLARFIYALGIRNVGEATAKDLARYFGSLQALLAA----------DIEQLQQVPDVG 576

Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
            I+A++I +F   P N   ++ L    +  +           +  K LV TGTL  + R 
Sbjct: 577 PIVAESIRQFLSEPHNQQVIQDLQDVGLHWTESDGAGTQQGVLTGKTLVLTGTLPTMSRD 636

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A+  +   G  V+  +S+KTD ++ G+  GSKL KAQ+LGV +++E   L LL+   ++
Sbjct: 637 QAKALIEAAGGKVAGSVSKKTDFVVAGEEAGSKLTKAQELGVAVLDENGLLALLEDKQSS 696

Query: 725 LRIHDD 730
              HDD
Sbjct: 697 ---HDD 699


>gi|289208742|ref|YP_003460808.1| DNA ligase, NAD-dependent [Thioalkalivibrio sp. K90mix]
 gi|288944373|gb|ADC72072.1| DNA ligase, NAD-dependent [Thioalkalivibrio sp. K90mix]
          Length = 697

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 257/721 (35%), Positives = 382/721 (52%), Gaps = 57/721 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  + +  L ++I +H+  YY    P + D+E+DAL R  + +    PDL     P+ P 
Sbjct: 17  EVGERIEQLRRQIEHHNYRYYVLDDPEVSDAEFDALMRELEQLEADHPDLV---TPDSPT 73

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFFT 129
            ++GG        V H +P LSL   +  +++R F  R+     K+  +       + + 
Sbjct: 74  QRVGGAPAAGFDTVRHRLPMLSLANGFESDEIRDFDRRVRERLAKQTGDPARAEQAVAYM 133

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV----LSLNIPEII 185
            EPK+DG  I++ YE G+ V AA RGDG +GEDV+  +R +  IP       + + P ++
Sbjct: 134 AEPKLDGLAISLIYENGRLVQAATRGDGETGEDVTGNVRTVRPIPLHLGDRYTDDAPGVL 193

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEV++ ++DF  LN  + A G++ + NPRNAA+G LR+L+P     R L+FF + +G
Sbjct: 194 EVRGEVFMRRSDFERLNQGLEADGQRGFMNPRNAAAGSLRQLDPKVTARRPLSFFAYSVG 253

Query: 245 KTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                     Q   L  +  LGFPV       +   G ++YY  +   R  L Y+IDG+V
Sbjct: 254 HVEGGTLPDTQSGTLDWLHRLGFPVCPERAVLDGVEGCLAYYERLAERRRELDYEIDGIV 313

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD  + Q+QLG  +R+PRW I+HKF  ++ +T L  +D ++GRTG LTPVARLEPV +
Sbjct: 314 YKVDSLADQQQLGFVSRAPRWAIAHKFPAEEQTTTLRAVDFRVGRTGALTPVARLEPVLV 373

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  ++NATLHN D I             +DIR+GDRV+V+RAG+VIP+VV     ER  
Sbjct: 374 GGVTVSNATLHNMDEIAR-----------KDIRIGDRVIVRRAGDVIPEVVGRAGGERPA 422

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D +    P+ CP C S + R          A  RCTGGL C AQ+ E LKHFVSR A +I
Sbjct: 423 DTRAIEMPTRCPECDSHIERPEGE------AVARCTGGLVCPAQRREALKHFVSRRAMDI 476

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EG G++ ++           ++ PAD+F L   +       E +   G     NL +++ 
Sbjct: 477 EGFGEKLIEQLAD----GGIVQSPADLFALDTERL------EALERVGPKLAENLVNALE 526

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + R  +L RFIF+LGIR VG   AR+LA YY       Q           D  +L  VP 
Sbjct: 527 QARETTLARFIFALGIREVGEVTARNLATYYGDLDTLMQA----------DAEALQEVPD 576

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS-----PSIGRHEKNVSSEIENKKLVFTGTL 658
           VG I+A+ I  F+  P N+  + AL +        P+    EK  ++ +     V TG+ 
Sbjct: 577 VGPIVAEHIANFFAEPHNLEVIRALREAGVHWPDPPARPAAEKGETAPLAGNTYVLTGSF 636

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R +A+  +   GA V+  +S+KT  +I G +PGSK+ KA+ L + I+  +    LL
Sbjct: 637 DTMTREEAKAALEARGAKVTGSVSKKTTAVIAGTDPGSKVTKAESLDIPILGPDDLAQLL 696

Query: 719 Q 719
            
Sbjct: 697 A 697


>gi|227328979|ref|ZP_03833003.1| NAD-dependent DNA ligase LigA [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 684

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 255/727 (35%), Positives = 405/727 (55%), Gaps = 54/727 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           MK  +  P E   +  A   ++ L + + +H+  Y+    P I D EYD L +   ++  
Sbjct: 1   MKPVKKEPAE---VNVAALRVAELRRVLRHHEYKYHVEDAPEIPDVEYDKLMQELKSLEA 57

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           A P+L  S   + P  ++G     +  +V H +P LSL+ +++ E    F  RI      
Sbjct: 58  AHPELVTS---DSPTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRL-- 112

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           K+ + + F  E K+DG  +++ YE+G  V AA RGDG +GE++++ IR +  IP  L  +
Sbjct: 113 KNGDDLTFCCELKLDGLAVSLLYEEGVLVQAATRGDGTTGENITSNIRTVAAIPLRLEGD 172

Query: 181 I-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
             P  +EVRGEV++  + F  LN+E    G K +ANPRNAA+G LR+L+P    TR L F
Sbjct: 173 NIPRRVEVRGEVFMKHSGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITATRPLTF 232

Query: 239 FVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           F +G+G           +E L + +  G PV++ ++       ++ +Y +++  RS+L +
Sbjct: 233 FCYGVGLLEGGVLPASHWERLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSSLGF 292

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+V KVD   LQ++LG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVAR
Sbjct: 293 DIDGVVVKVDSLELQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVAR 352

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV + G +++NATLHN D I+ L            +++GDRV+V+RAG+VIP++V I+
Sbjct: 353 LEPVAVAGVIVSNATLHNADEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIV 401

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            +ER    +P  FP+ CP+C S V R          A  RCT GL C AQ+ E LKHFVS
Sbjct: 402 ESERPETVRPILFPAACPVCGSDVERVEGE------AVTRCTAGLICGAQRKEALKHFVS 455

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A ++EG+G + +D   + E     ++ PAD+F L      S   +  +   G  S TN
Sbjct: 456 RRALDVEGMGDKIIDQLVEKE----YVKTPADLFRL------SAGIMTGLDRMGPKSATN 505

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L +++ K ++ +L RF+++LGIR VG   A +LA ++ S +               D  +
Sbjct: 506 LVNALEKAKSTTLARFLYALGIRDVGESTAANLAAHFGSLEALFAA----------DEDA 555

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI------GRHEKNVSSEIENKK 651
           L+ VP VG ++A  +  F +   N   +  L      +I        + + + S    K 
Sbjct: 556 LLEVPDVGKVVAAHVRHFLEEEHNQTVIRELTDPAGINIHWPEVQVVNVEEIDSPFAGKT 615

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +V TG+L  + R +A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E
Sbjct: 616 VVLTGSLSILSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDE 675

Query: 712 EQFLFLL 718
            + + LL
Sbjct: 676 AEMIRLL 682


>gi|187924439|ref|YP_001896081.1| DNA ligase, NAD-dependent [Burkholderia phytofirmans PsJN]
 gi|254781278|sp|B2T5K0|DNLJ_BURPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|187715633|gb|ACD16857.1| DNA ligase, NAD-dependent [Burkholderia phytofirmans PsJN]
          Length = 688

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 256/711 (36%), Positives = 388/711 (54%), Gaps = 49/711 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            +  + L  E+   +  YY   +P + D+EYD L +  ++I    PDL     P+ P  +
Sbjct: 15  AERAAWLRAELERANYAYYVLDQPDLPDAEYDKLFKELESIETEHPDLIV---PDSPTQR 71

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS---IFFTLEPKI 134
           +GGE       V H  P LSL   +  ED+  F  R+     K        + +  E K 
Sbjct: 72  VGGEAASGFEPVVHDQPMLSLNNGFADEDIVAFDKRVGDALGKNASEPPVPVDYAAELKF 131

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193
           DG  I++RY  G FV A+ RGDG +GE+V+  +R I +IP  L     P +++VRGEV +
Sbjct: 132 DGLAISLRYVDGAFVQASTRGDGTTGENVTENVRTIRSIPLKLKGKRVPHVLDVRGEVLM 191

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFA 251
            K DF  LN+   A  +K +ANPRNAA+G LR+L+      R L+FF +G+G        
Sbjct: 192 FKRDFERLNERQRAAEQKEFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLEGMEMP 251

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E+L   + LG PVN+         G++ +++ +   R  LPYDIDG+VYKV+    
Sbjct: 252 ATHSELLDWYKELGLPVNSERAVVQGAEGLLGFFHGVGEKREKLPYDIDGVVYKVNRRDE 311

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q  LG  +R+PR+ ++HKF  ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNA
Sbjct: 312 QDALGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNA 371

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED ++            +DIR+GD V+V+RAG+VIP+VV  +++ R  DA+ F  P
Sbjct: 372 TLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALLDRRPSDAREFVMP 420

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S + R  +       A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +
Sbjct: 421 TQCPVCGSSIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKII 474

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D   +       +R PAD+F +          +  +  F + S  NL DS+ K ++ +L 
Sbjct: 475 DQLVEQN----LVRTPADLFNI------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLA 524

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFI++LGIRHVG   A+ LAK++ S                    +L+ V  VG ++A++
Sbjct: 525 RFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SVEALLEVNDVGPVVAES 574

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           I +F+    N   +E L      +        K     +  K +V TGTL  + R +A+E
Sbjct: 575 IHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPSLAREEAKE 634

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +   GA V+  +S+KTD ++ G + GSKL KA++LGV +++E+    LL+
Sbjct: 635 MLEAAGAKVAGSVSKKTDYLVAGADAGSKLAKAEELGVPVLDEDGMRKLLE 685


>gi|312173113|emb|CBX81368.1| DNA ligase [Erwinia amylovora ATCC BAA-2158]
          Length = 670

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 244/714 (34%), Positives = 399/714 (55%), Gaps = 51/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  + +++ L   + +++  Y+    P + D+EYD L      +   +P+L  S   + 
Sbjct: 1   MESLQDKITHLRTLLRHYEHQYHVLDAPTVPDAEYDRLMGELRELETQYPELLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+  ++ E    F  R+    +  DD  I F  E K
Sbjct: 58  PTQRVGAAPLSAFGQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDD--ITFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YEKG+ V AA RGDG +GED++A +R I  IP  LS + IPE +EVRGEV+
Sbjct: 116 LDGLAVSLLYEKGQLVRAATRGDGTTGEDITANVRTIRAIPLRLSGDSIPERLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           +    F  +N +  + G+K +ANPRNAA+G LR+L+P     R L FF +GLG       
Sbjct: 176 MPLAGFEQMNQQARSCGQKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGLGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     LQ+ +  G PV++ VR +++   ++ +Y+++++ R TL +DIDG+V KVD   
Sbjct: 236 PRSHMARLQQFKAWGLPVSDRVRLSHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW I+ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWAIAFKFPAQEQITTVRDVEFQVGRTGAMTPVARLEPVLVAGVMVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GDRV+++RAG+VIP+V+ ++      DA+  +F
Sbjct: 356 ATLHNADEIERL-----------GLKIGDRVVIRRAGDVIPQVMSVVETG--DDAREIAF 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S + R             RCTGGL C AQ+   LKHFVSR A +I+G+G++ 
Sbjct: 403 PTHCPICGSDIERVEGE------VVARCTGGLICGAQRKGALKHFVSRRALDIDGMGEKI 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D     E     ++ PA++F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 457 IDQLVDKE----YVKNPAELFELTA------GKLTGLDRMGPKSAQNVVNALAKAKQTTF 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGI  VG   A +LA ++ + +               D  +L+ V  VG ++A 
Sbjct: 507 ARFLYALGISEVGEATAANLAAHFGTLEALMTA----------DLDALMAVQDVGKVVAS 556

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F     N   +  L+ +   +  +        + S    K +V TG+L  + R +A
Sbjct: 557 HVRNFLDEESNREIIRLLVDKAGVNWPQVVVVKAGEIDSPFAGKTVVLTGSLSILSRDEA 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E++ + LL +
Sbjct: 617 KDRLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEQEMIRLLGE 670


>gi|126668324|ref|ZP_01739283.1| DNA ligase, NAD-dependent [Marinobacter sp. ELB17]
 gi|126627241|gb|EAZ97879.1| DNA ligase, NAD-dependent [Marinobacter sp. ELB17]
          Length = 703

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 247/737 (33%), Positives = 392/737 (53%), Gaps = 67/737 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             R  +  L   I+ H+  YY    P + D+EYD L R   A+   +P+LA +     P 
Sbjct: 7   SVRDRVHQLRTTITDHNHHYYVLDDPQVPDAEYDRLFRGLQALEAEYPELATA---TSPT 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK--------------- 120
            ++G  +  S  +V H IP LSL+  ++ +DLR F  R+     +               
Sbjct: 64  QRVGSAVETSFAEVIHRIPMLSLDNAFSADDLRDFDRRVRERLNRGNTAGEDSIREDSTA 123

Query: 121 ---------KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP 171
                    K++ +I +  EPK+DG  +++ Y+ G+ V AA RGDG++GED++A IR I 
Sbjct: 124 EEGSKEEDSKEERTIEYVCEPKLDGLAVSLHYQNGELVRAATRGDGYTGEDITANIRTIA 183

Query: 172 TIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230
           ++P  L   + P+ +EVRGEVY+ +  F  LN  +   G K + NPRNAA+G LR+   +
Sbjct: 184 SVPLTLRGGDFPQTVEVRGEVYMPRAGFDRLNQRLAGRGEKTFVNPRNAAAGSLRQKKSS 243

Query: 231 -DITRYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM 288
               R L    + +  T E       +E LQ++   GF +N  +  A      +  Y  +
Sbjct: 244 VTARRPLEMCAYSVAVTDESALPPTHWEGLQQVSEWGFRINPEMSLAIGADQCLEAYEAL 303

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
            + R +LPY+IDG+V+KV+   LQ+QLG  +R+PRW I+ KF  ++  T +  ++ Q+GR
Sbjct: 304 MAKRDSLPYEIDGIVFKVNRLDLQQQLGFVSRAPRWAIAQKFPAQEELTVVESVEFQVGR 363

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG +TPVARL+PV +GG  ++NATLHN D ++ L           D+ +GD V ++RAG+
Sbjct: 364 TGAITPVARLKPVFVGGVTVSNATLHNMDEVRRL-----------DLHIGDTVFIRRAGD 412

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           VIPKVV ++ N+R  DA     P+ CP C S VV+             RC+GGL C AQ+
Sbjct: 413 VIPKVVKVVQNKRPADAWVIELPAQCPACGSDVVQIEGE------VIARCSGGLFCPAQR 466

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
            E ++H+ SR A +IEGLG + +D    S+     +   AD++ L +           + 
Sbjct: 467 KEAIRHYASRKALDIEGLGDKWVDILVDSKK----VETIADLYRLCKADL------TVLE 516

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
             GD S +NL  +I+  R   L RF+++LGIR VG   A+ LA Y+ S +  A+      
Sbjct: 517 RMGDKSASNLIAAIDASRQPLLWRFLYALGIREVGEATAKGLAGYFGSLEAIAEA----- 571

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
                D  +L  V  VG I+A  +  F++ P N   ++ L +       +     S  + 
Sbjct: 572 -----DESALQAVSDVGPIVAGHLRSFFEQPHNQEILQNLTQAGVIWQTQEITAASMPLH 626

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            +  V TGT++++ R +A++ +  LGA V+  +S+KT  ++ G+  GSKL KAQQLGV++
Sbjct: 627 GQTWVLTGTMEQMTRDQAKQKLEGLGAKVAGSVSKKTACVVAGEAAGSKLAKAQQLGVEV 686

Query: 709 MNEEQFLFLLQQYNTTL 725
           ++E+  L LL+ ++  +
Sbjct: 687 LSEQGLLDLLRGHDVEV 703


>gi|172036733|ref|YP_001803234.1| DNA ligase [Cyanothece sp. ATCC 51142]
 gi|254781304|sp|B1WZL6|DNLJ_CYAA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171698187|gb|ACB51168.1| DNA ligase [Cyanothece sp. ATCC 51142]
          Length = 676

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 229/715 (32%), Positives = 372/715 (52%), Gaps = 48/715 (6%)

Query: 12  LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ++I  + ++ ++ L Q++   +  YY    PI+ D+ YD L R  D++    P L     
Sbjct: 1   MTITPEIKQRVTQLRQQLQKANYAYYVLDDPIMEDAVYDQLYRELDSLEKEHPQLI---T 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+ P  ++G +       VTH+IP  SLE  +N+E+L+ +  R  R ++K++  S+ +  
Sbjct: 58  PDSPTQRVGDQPASQFVSVTHNIPLYSLENAFNLEELKAWEKRWQRSYEKEEFTSVEYVC 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRG 189
           E KIDG+ + + YE G FV    RGDG +GE+++  +R I +IP      N P I+EVRG
Sbjct: 118 ELKIDGSALALTYENGLFVRGVTRGDGTTGEEITQNVRTIRSIPLKLNIDNPPPIVEVRG 177

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E ++  ++F  +N E    G   +ANPRNAA+G LR+L+P  + +    F        E 
Sbjct: 178 EAFLPLDEFDRINQEREEKGDALFANPRNAAAGTLRQLDPKIVDQRRLQFFAYTLHLEEA 237

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q+E L  +   GF VN   +       + +Y+ + ++ R  LPY  DG+V K++ +
Sbjct: 238 EISSQWESLNYLENSGFLVNPHRKLCQFLDEVEAYFKQWETARKDLPYMTDGVVVKINNY 297

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQK LG   + PRW I+ K+  ++A T + +I + +GRTG +TP+A +EPV++ G  + 
Sbjct: 298 SLQKALGFTQKFPRWAIALKYPAEEAPTLVKNIVVNVGRTGAVTPMAVMEPVHLAGTTVQ 357

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN D I  L           DIRVGD V++++AGE+IP+VV ++   R P+ QP+ 
Sbjct: 358 KATLHNSDRIAQL-----------DIRVGDTVIIRKAGEIIPEVVRVLKELRPPNTQPYE 406

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C S ++R          A  RC   L+C A     L H+ SRDA +I GLG++
Sbjct: 407 MPDRCPECDSPLIRPSGE------AVIRCMN-LSCEAILRGSLVHWASRDALDIRGLGEK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +    ++      +   AD++ L          I N+   G  S  NL  +I   +   
Sbjct: 460 IVVLLIEN----GLVNSIADLYYLTPE------TIANLERMGSKSADNLIKAIEGSKQQP 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             R ++ LGIR+VG+  A  L + + S    +Q            + SL  V  VG+ IA
Sbjct: 510 FSRVLYGLGIRYVGSVTANLLVENFPSIDQLSQA----------SFASLSSVYGVGEEIA 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-----SEIENKKLVFTGTLQKIQRH 664
           Q+I++++   +N   ++ L K          + ++     +    K  V TGTL  + R+
Sbjct: 560 QSIIDWFSIEKNCDLIKQLKKVGLQLETTSSEQITVEPSLTPFSGKTFVITGTLPTLTRN 619

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A+  + Q G  V+  +S+KTD ++VG+  GSKL +A++LG+  ++E   L LL 
Sbjct: 620 EAKALIEQAGGKVTGSVSKKTDYLLVGEKAGSKLTQAEKLGINQLSEADLLRLLN 674


>gi|294677201|ref|YP_003577816.1| DNA ligase [Rhodobacter capsulatus SB 1003]
 gi|294476021|gb|ADE85409.1| DNA ligase (NAD(+)) [Rhodobacter capsulatus SB 1003]
          Length = 707

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 294/719 (40%), Positives = 432/719 (60%), Gaps = 17/719 (2%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M       +++L+  +A  E+  L   I   +  Y+    P I D++YDALKRR  AI  
Sbjct: 2   MSAAPFSDLDSLTRAEAEAEVPELVARIEAANHAYHTLDAPKISDADYDALKRRLAAIEA 61

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FPDLAR+   + P  ++G  +     KV H I  LSLE  +   D+  F  R+  +   
Sbjct: 62  RFPDLARA---DSPTMRVGAAVAEGFGKVAHEIRMLSLENAFLDADVADFDGRMRSYLGL 118

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             ++++  T EPKIDG  +++RYE G  V AA RGDG  GE+V+   R I  IP+ L+  
Sbjct: 119 GPESALPCTAEPKIDGLSLSLRYEDGLLVQAATRGDGEVGENVTENARTIADIPQRLTGA 178

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239
            P ++EVRGEVY+S  DF ALN      G K +ANPRNAA+G +R+L+     +R L FF
Sbjct: 179 -PAVLEVRGEVYMSHADFAALNARQAERGDKTFANPRNAAAGSVRQLDARITASRPLKFF 237

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G  SE  +  Q   +++++ LGF  N   R       ++++Y  +++ R+TL YDI
Sbjct: 238 AYSWGVLSEPLSDTQLGAIERLKALGFQTNPLTRLCADTAEMLAHYRAIEAQRATLGYDI 297

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKV++ +LQ +LG R+ +PRW I+HKF  + A TRL  I+IQ+GRTG L+PVARL 
Sbjct: 298 DGVVYKVNDLALQARLGFRSTTPRWAIAHKFPAELAWTRLEKIEIQVGRTGALSPVARLA 357

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG +++NATLHNEDYI GL + G+V+R G+DIR GD V V RAG+VIPKV D+ ++
Sbjct: 358 PVTVGGVVVSNATLHNEDYIAGLSSKGEVIRDGKDIREGDWVQVYRAGDVIPKVADVDLS 417

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R P AQPF FP  CP C S  +R+         A  RCTGGL C AQ +E+LKHFVSR 
Sbjct: 418 RRDPAAQPFVFPHLCPECGSEALREEG------DAVRRCTGGLICPAQAVEKLKHFVSRA 471

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+IEGLG +Q++ F+K       IR PA+IFTLQ R      +++N  G+G+ S  NL+
Sbjct: 472 AFDIEGLGAKQVEAFYKD----GWIREPAEIFTLQARFGAGLQQLKNREGWGEKSAQNLF 527

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I ++R I L R IF+LGIRHVG   A   A +YL+++ F   +   +  +  +W  L+
Sbjct: 528 QAIEEKRKIPLARLIFALGIRHVGESSAALFATHYLTWERFEAAMRAAVPGS-AEWQELL 586

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +  VG+ +A ++   +       A++ L+  ++       +   S +    +VFTGTL+
Sbjct: 587 SIDGVGETLAASVTAAFHPGAERDAIDRLVTHLTVEPAV-PRASDSPVAGLTVVFTGTLE 645

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++ R +A+     LGA V+  +S KTDI++ G   GSK +KA  LGV++++EE ++ L+
Sbjct: 646 RMTRAEAKARAEALGAKVAGSVSAKTDILVAGPGAGSKAKKAADLGVRVIDEEAWIRLI 704


>gi|292488952|ref|YP_003531839.1| DNA ligase [Erwinia amylovora CFBP1430]
 gi|292900089|ref|YP_003539458.1| DNA ligase [Erwinia amylovora ATCC 49946]
 gi|291199937|emb|CBJ47061.1| DNA ligase [Erwinia amylovora ATCC 49946]
 gi|291554386|emb|CBA21816.1| DNA ligase [Erwinia amylovora CFBP1430]
          Length = 670

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 244/714 (34%), Positives = 398/714 (55%), Gaps = 51/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  + +++ L   + +++  Y+    P + D+EYD L      +   +P+L  S   + 
Sbjct: 1   MESLQDKITHLRTLLRHYEHQYHVLDAPTVPDAEYDRLMGELRELETQYPELLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSL+  ++ E    F  R+    +  DD  I F  E K
Sbjct: 58  PTQRVGAAPLSAFGQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDD--ITFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YEKG+ V AA RGDG +GED++A +R I  IP  LS + IPE +EVRGEV+
Sbjct: 116 LDGLAVSLLYEKGQLVRAATRGDGTTGEDITANVRTIRAIPLRLSGDSIPERLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           +    F  +N +  + G+K +ANPRNAA+G LR+L+P     R L FF +GLG       
Sbjct: 176 MPLAGFEQMNQQARSCGQKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGLGLLEGGEM 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     LQ+ +  G PV++ VR +++   ++ +Y+++++ R TL +DIDG+V KVD   
Sbjct: 236 PRSHMARLQQFKAWGLPVSDRVRLSHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDSLE 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW I+ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G +++N
Sbjct: 296 LQEQLGFVARAPRWAIAFKFPAQEQITTVRDVEFQVGRTGAMTPVARLEPVLVAGVMVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +++GDRV+++RAG+VIP+V+ ++      DA   +F
Sbjct: 356 ATLHNADEIERL-----------GLKIGDRVVIRRAGDVIPQVMSVVETG--DDALEIAF 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S + R             RCTGGL C AQ+   LKHFVSR A +I+G+G++ 
Sbjct: 403 PTHCPICGSDIERVEGE------VVARCTGGLICGAQRKGALKHFVSRRALDIDGMGEKI 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D     E     ++ PA++F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 457 IDQLVDKE----YVKNPAELFELTA------GKLTGLDRMGPKSAQNVVNALAKAKQTTF 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGI  VG   A +LA ++ + +               D  +L+ V  VG ++A 
Sbjct: 507 ARFLYALGISEVGEATAANLAAHFGTLEALMTA----------DLDALMAVQDVGKVVAS 556

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +  F     N   +  L+ +   +  +        + S    K +V TG+L  + R +A
Sbjct: 557 HVRNFLDEESNREIIRLLVDKAGVNWPQVVVVKAGEIDSPFAGKTVVLTGSLSILSRDEA 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E++ + LL +
Sbjct: 617 KDRLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEQEMIRLLGE 670


>gi|152979719|ref|YP_001345348.1| NAD-dependent DNA ligase LigA [Actinobacillus succinogenes 130Z]
 gi|190359224|sp|A6VR16|DNLJ_ACTSZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|150841442|gb|ABR75413.1| DNA ligase, NAD-dependent [Actinobacillus succinogenes 130Z]
          Length = 672

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 259/710 (36%), Positives = 397/710 (55%), Gaps = 45/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +++ L   + +H+  Y+    P I DSEYD L  R  A+    P+L      + 
Sbjct: 1   MTDIQNQINQLRNTLRHHEYQYHVLDNPEIPDSEYDRLFHRLKALEQQHPELI---SADS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++TH +P LSL+ +++ E+   F+ RI        DN + F  EPK
Sbjct: 58  PTQRVGAKPLAGFAQITHELPMLSLDNVFSDEEFYAFVKRIQERLITLPDN-LEFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I YE G+ V AA RGDG +GED++  IR I  IP  L + N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYENGRLVQAATRGDGTTGEDITLNIRTIRNIPLQLLTDNPPVRLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV-HGLGKTSEIF- 250
           + +  F  LN+  +A G K +ANPRNAA+G LR+L+P   ++    +  + +G       
Sbjct: 177 MPQEGFDRLNEAALARGEKTFANPRNAAAGSLRQLDPKITSQRPLVWNAYSIGIAEGADL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               YE LQ ++ +G PVN  +R       ++ +Y  ++  R  L YDIDG V KV+E +
Sbjct: 237 PPTHYERLQWLKSIGIPVNGEIRLCRGAENVLKFYRTIQEKRPELGYDIDGTVLKVNEIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+L+PV + G  ++N
Sbjct: 297 LQERLGFISKAPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L           DI +GD V+V+RAG+VIP+++ ++ + R P+A+P  F
Sbjct: 357 ATLHNGDEIARL-----------DIAIGDTVIVRRAGDVIPQIIGVVHDRRPPNAEPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S +VR          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTLCPVCHSAIVRIEGE------AVARCTGGLFCDAQRKESLKHFVSRRAMDIDGVGAKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     IR PAD+F L          +  +   G+ S     DS+ K +  +L
Sbjct: 460 IEQLVDRE----LIRTPADLFKL------DLITLMRLERMGEKSAQKALDSLEKAKKTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +                 D   L  V  VG+++A 
Sbjct: 510 ARFIFALGIREVGEATALNLANFFKNLTALQTA----------DLEQLQAVSDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   NI  V  L+ +        EK V+ +  + K +V TGTL ++ R++A+  
Sbjct: 560 RIYVFWREQHNIDVVNDLIAQGVHWDDVEEKQVNENPFKEKTVVLTGTLSQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + Q+GA V+  +S KT I+I GD+ GSKL KAQ LGV +M+E +FL ++ 
Sbjct: 620 LQQMGAKVAGSVSAKTHIVIAGDSAGSKLSKAQDLGVAVMSEAEFLEIVN 669


>gi|319776649|ref|YP_004139137.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3047]
 gi|329124164|ref|ZP_08252711.1| NAD-dependent DNA ligase LigA [Haemophilus aegyptius ATCC 11116]
 gi|317451240|emb|CBY87473.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3047]
 gi|327467589|gb|EGF13087.1| NAD-dependent DNA ligase LigA [Haemophilus aegyptius ATCC 11116]
          Length = 670

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 243/709 (34%), Positives = 393/709 (55%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MKNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RGDG +GED++A IR I  +P  L + N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   ++       +G+G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGTITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L        T +  +   G  S  N  +S+   ++ +L
Sbjct: 460 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGAKSAENALNSLENAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +                 +   L +VP VG+++A 
Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ +         ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668


>gi|260363295|ref|ZP_05776162.1| DNA ligase (NAD+) [Vibrio parahaemolyticus K5030]
 gi|308113593|gb|EFO51133.1| DNA ligase (NAD+) [Vibrio parahaemolyticus K5030]
          Length = 655

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 247/696 (35%), Positives = 383/696 (55%), Gaps = 47/696 (6%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
            YH   YY    P I D+EYD L R    I    PDL      + P  ++GG+      +
Sbjct: 2   HYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTV---DSPSQRVGGKPLSEFSQ 58

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           VTH +P LSL+  ++  +L  F  R       +      +  EPK+DG  +++ YE G  
Sbjct: 59  VTHEVPMLSLDNAFDDSELDSFHKRAQDRIGGESIKQ--YCCEPKLDGLAVSLLYENGIL 116

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GE+++  +R I  IP  L  +  P  +EVRGEV++ K  F  LN+    
Sbjct: 117 VQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGEVFMPKAGFEKLNELARQ 176

Query: 208 VGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLG 265
            G K + NPRNAA+G LR+L+     +R L+F+ + +G       A   YE   +++  G
Sbjct: 177 KGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGADLAASHYERFLQIKSWG 236

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
            P+    ++ ++   + +YY  +   R  LPY+IDG+V K+D+ ++Q++LG  AR+PRW 
Sbjct: 237 LPMCPETKRVDSLADVKTYYQHILQRRDALPYEIDGVVIKIDDIAVQERLGFVARAPRWA 296

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++NATLHN D I+ L   
Sbjct: 297 IAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIERLQ-- 354

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                    +++GD+V+++RAG+VIP+VV +I   R   A+   FP+ CP+C S V R  
Sbjct: 355 ---------VKIGDQVVIRRAGDVIPQVVSVIKERRPETARDIIFPTQCPVCGSHVERIE 405

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                   A  RCTGGL C AQ+ + LKHFVSR A +++GLG + ++     E     + 
Sbjct: 406 GE------AVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDRE----MVE 455

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
            PAD+F L      S   +  +   G  S  N+ +++ K +  +L RF++SLGIR VG  
Sbjct: 456 TPADLFKL------SAGVLTVLERMGPKSAQNIVNALEKSKLTTLPRFLYSLGIREVGEA 509

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A +LA+++ S +                   LI V  +G ++A+ I  F++  +N   V
Sbjct: 510 TAANLAQHFKSLEAIQAATE----------EQLIAVQDIGVVVAKHITTFFEEEQNQAVV 559

Query: 626 EALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           + LL +    P +   E+     +E K +V TGTL ++ R +A+E +  LGA V+  +S+
Sbjct: 560 QDLLVQGIHWPEVSAPEQGAELPLEGKTVVLTGTLSQLGRTEAKEALQSLGAKVTGSVSK 619

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           KTDI+  G+N GSKL KAQ+LG++I  E+  L L+ 
Sbjct: 620 KTDILFAGENAGSKLAKAQELGIEIKTEQDLLELIN 655


>gi|124302218|gb|ABN05294.1| DNA ligase [Geobacillus sp. g]
          Length = 670

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 258/717 (35%), Positives = 395/717 (55%), Gaps = 54/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +QA +  + L + +  +   YY   +P + D+EYD L +   AI   +P+L  S   
Sbjct: 1   MDRQQAERRAAELRELLHRYGYEYYVLGRPSVPDAEYDRLMQELMAIEEQYPELKTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IGG    +  KVTH +P +SL   ++  DLR F  R+      ++     +  E
Sbjct: 58  DSPTQRIGGPPLEAFRKVTHVVPMMSLANAFDEGDLRDFDRRVR-----QEVGEAAYVCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  +R I ++P  L   +   +E RGE 
Sbjct: 113 LKIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLRTIRSLPLRLKEPVS--LEARGEA 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           ++ K  FL LN+E  A G + +ANPRNAA+G LR+L+P    +R L+ FV+GL    E+ 
Sbjct: 171 FMPKASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELG 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   E L  ++ LGF VN   R+      ++++ NE    R  LPY+IDG+V KVD F+
Sbjct: 231 IESHSEALDYLQALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFA 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T L+ I++ +GRTG++TP A LEPV + G  +  
Sbjct: 291 QQRELGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED+I+            +DIR+GD V++K+AG++IP+VV ++V+ R  D  PF  
Sbjct: 351 ATLHNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVM 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  ERL HF SR A NIEGLG++ 
Sbjct: 400 PTHCPECESELVRLDGE------VALRCLNPK-CPAQLRERLIHFASRAAMNIEGLGEKV 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  +   AD++ L + Q         +   G+ S TNL  +I   +  SL
Sbjct: 453 VTQLFN----AGLVHDVADLYRLTKEQLIG------LERMGEKSATNLLAAIEASKQNSL 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR+VGA+ A+ LA+++ + +   +               L+ VP +G+ +A 
Sbjct: 503 ERLLFGLGIRYVGAKAAQLLAEHFETMERLEKATK----------EELMAVPEIGEKMAG 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+ F+  P     +  L         +      E    S    K +V TG L  + R++
Sbjct: 553 SIIAFFSQPEAAELLHELRLYGVNMAYKGPKRAAEAPADSAFAGKTVVLTGKLASMSRNE 612

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+E + +LG  V+  +SR TDI+I G++ GSKLEKAQQLG++I +E +FL  + +  
Sbjct: 613 AKEEIERLGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDESRFLQEINRGK 669


>gi|90416525|ref|ZP_01224456.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2207]
 gi|90331724|gb|EAS46952.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2207]
          Length = 677

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 263/713 (36%), Positives = 396/713 (55%), Gaps = 44/713 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQ R E   L+ E++ H+  YY   +P I DSEYD   RR   I    P+L      + 
Sbjct: 5   LEQVRAEYEQLKDELNQHNHRYYVLDEPTIPDSEYDRSMRRLQDIEQQHPELL---SDDS 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    S  +V+H++P LSL+  ++ E+L  F  RI      KDD  I +  EPK
Sbjct: 62  PSQRVGGAALPSFSQVSHAVPMLSLDNAFSEEELEAFDRRISDRLNYKDDQQIDYVCEPK 121

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ Y +G  V  A RGDG  GED++A +R I +IP  L+ + IPE++EVRGE+Y
Sbjct: 122 LDGVAVSLLYNQGLLVRGATRGDGKVGEDITANVRTINSIPLRLNGDGIPELLEVRGEIY 181

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIF 250
           + +  F  +N   IA G KP+ NPRNAA+G LR+L+     +R L    + +G+      
Sbjct: 182 LPRGGFDKINAAAIAKGDKPFVNPRNAAAGSLRQLDSKITASRPLEMCAYSVGQFQGGET 241

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                 ML+ +   GF +N  V          +YY  M+  R  LPYDIDG+VYKV++  
Sbjct: 242 PDSHLNMLKALGSWGFKINTYVEAVQGIAACEAYYERMQKRRDQLPYDIDGIVYKVNDLG 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  A++PRW I+ KF  ++  T+L+D++ Q+GRTG LTPVARL PV +GG  ++N
Sbjct: 302 LQQRLGFVAKAPRWAIARKFPAQEEMTQLVDVEFQVGRTGALTPVARLAPVFVGGVTVSN 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            + +GD V+++RAG+VIPKV  ++++ R  +AQP  F
Sbjct: 362 ATLHNGDEIARL-----------GLCIGDTVIIRRAGDVIPKVAAVVLDRRPENAQPIVF 410

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+CQS V R          A  RC+GGL C AQ  E +KHF SR A +I+GLG + 
Sbjct: 411 PENCPVCQSSVRRVEGE------AVARCSGGLFCGAQSKEAIKHFASRKAMDIDGLGDKL 464

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++           I  PAD++ L      S TKI ++   G+ S  NL DSI   R  +L
Sbjct: 465 VELLVDR----GLIYSPADLYEL------SATKIADLERMGEKSAQNLIDSIAVSRQTTL 514

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+F+LGIR VG    ++LA+ + S +   +           +  +L+ V  +G ++A 
Sbjct: 515 AKFLFALGIREVGEATGQTLARNFGSLEAIIEA----------EQDALLEVDDIGPVVAY 564

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEY 669
            I +F++NP N+  + AL +              S  ++ +  V TG ++ + R +A++ 
Sbjct: 565 YIRDFFRNPDNLSIINALRESGVSWDDIDITAQDSQPLKGQTWVLTGGMEIMSRAEAKDR 624

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + +LGA V+  +S KT  ++ G   GSKL KAQ L + + +EEQFL  L+ + 
Sbjct: 625 LQELGAKVAGSVSAKTSQVVAGPGAGSKLTKAQSLDIPVFDEEQFLAFLEGHK 677


>gi|83951899|ref|ZP_00960631.1| DNA ligase, NAD-dependent [Roseovarius nubinhibens ISM]
 gi|83836905|gb|EAP76202.1| DNA ligase, NAD-dependent [Roseovarius nubinhibens ISM]
          Length = 748

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 303/760 (39%), Positives = 438/760 (57%), Gaps = 59/760 (7%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +   +E L+ + AR EL+ L   +   +  Y+    P I D+EYDALK+R   I   FP+
Sbjct: 3   ETTAVERLTEDAARAELARLADLLQRANAAYHGADAPEISDAEYDALKQRNAEIEARFPE 62

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L R    + P  ++G   +    KV H I  LSL   +   D+  F  RI ++       
Sbjct: 63  LKRD---DSPSEQVGAAPSEGFGKVAHEIRMLSLGNAFADGDVADFDERIRKYLGLGSGA 119

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
           ++ +T EPKIDG  +++RYE+GK V AA RGDG  GE+V+A  R +  IP+ +S   PE+
Sbjct: 120 ALAYTAEPKIDGLSLSLRYEQGKLVQAATRGDGAVGENVTANARTVEDIPQEISGA-PEV 178

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243
           +EVRGEVY+S  DF ALN    A G KP+ANPRNAA+G LR+L+P     R L FF +  
Sbjct: 179 LEVRGEVYMSHADFEALNARQEAAGAKPFANPRNAAAGSLRQLDPGVTAARPLKFFAYAW 238

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G  S   A+ Q   + ++  LGFPVN   R+  +   ++++Y E++  R+TL YDIDG+V
Sbjct: 239 GALSAPLAETQMGAIARLGALGFPVNPLTRRCESVGEMIAHYREIEQGRATLGYDIDGVV 298

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD+ +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +
Sbjct: 299 YKVDDLALQARLGFRSTTPRWAIAHKFPAELAWTRLEGIDIQVGRTGALSPVARLAPVTV 358

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG +++NATLHNEDYI G DA G  +RGG+DIRVGD V V RAG+VIPK+ D+ + +R  
Sbjct: 359 GGVVVSNATLHNEDYIAGRDAKGGEIRGGKDIRVGDWVQVYRAGDVIPKIADVDLAKRPE 418

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            A+ F FP+ CP C S  +R+         A  RC+GGL C AQ +E+LKHFVSR AF+I
Sbjct: 419 GAERFDFPTRCPECGSEAIREEG------DAVRRCSGGLICPAQAVEKLKHFVSRAAFDI 472

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG +Q++ F++       I+ PADIFTLQ R      +++N  G+G+ S  NL+ +I 
Sbjct: 473 EGLGAKQVEQFYRD----GWIKAPADIFTLQERYGAGLQQLKNREGWGEKSANNLFAAIE 528

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN------------------ 585
           ++R I L + IF+LGIRH G   AR LA +Y  +Q  A+ I+                  
Sbjct: 529 EKRRIPLAKLIFALGIRHAGEVAARDLALHYRDWQAMAEAIDLARPAARAHRAADEAEEA 588

Query: 586 -------------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
                                    ++ A     W  LI V  +G ++  ++ + + N +
Sbjct: 589 ERQAAGAEGRRARVSETRAAAVADCDVPAEAAAAWADLIAVDGIGAVLGLSLSDAFANDQ 648

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
              A++ L+  +   +        S +  K +VFTG+L+K+ R +A+     LGA VS  
Sbjct: 649 ERAAIDTLVAGLDI-VAPDAPAADSPVAGKTVVFTGSLEKMTRAEAKARAESLGAKVSGS 707

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +S KTDI++ G   GSK  KA +LG++ ++E+ +L L+  
Sbjct: 708 VSAKTDILVAGPGAGSKATKAAELGIETLDEDGWLALIGD 747


>gi|261496584|ref|ZP_05992964.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261307787|gb|EEY09110.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 685

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 260/707 (36%), Positives = 402/707 (56%), Gaps = 46/707 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  +++ ++ Q +  ++  Y+    P + D+EYD L      +    P+L      + P 
Sbjct: 17  ELVEKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELI---SADSPT 73

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +      +VTH IP LSL+  ++ EDL  F+ R+  +        + F  EPK+D
Sbjct: 74  QRVGAKPLAGFAQVTHEIPMLSLDNAFSDEDLDGFLRRMESYITASPSQ-LEFCCEPKLD 132

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYIS 194
           G  ++I YE G    AA RGDG +GE+++A IR I  IP    + N P  +EVRGEV++ 
Sbjct: 133 GLAVSILYENGILTRAATRGDGTTGEEITANIRTIRNIPLKLNTTNPPARLEVRGEVFMP 192

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFA 251
           ++ F  LN++ +A G K +ANPRNAA+G LR+L+P    +     N +  G+ ++ +   
Sbjct: 193 QSGFNELNEKALAKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELP 252

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              +E LQ ++ LG PVNN +R       +++YY E+++ R TL YDIDG V KV++ +L
Sbjct: 253 ATHFERLQWLKSLGIPVNNEIRLVQGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIAL 312

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG  +RS RW I++KF  ++  T L ++D Q+GRTG +TPVA+LEPV + G  ++NA
Sbjct: 313 QEQLGFISRSSRWAIAYKFPAQEEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNA 372

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            I +GD V+++RAG+VIP++  +++  R  +A+   FP
Sbjct: 373 TLHNGDEIERL-----------GIVIGDTVIIRRAGDVIPQITGVVLERRPENAKKIEFP 421

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CPIC S V R          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ +
Sbjct: 422 TACPICHSAVTRVEGE------AVARCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLI 475

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     I  PAD+F L        T +  +   G+ S  N  +SI K +N +L 
Sbjct: 476 EQLMARE----LIETPADLFKL------DHTTLMRLERMGEKSAQNALNSIEKAKNTTLP 525

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF+FSLGIR VG   A +LA ++ S +   Q            +  L  V  VG+++A  
Sbjct: 526 RFLFSLGIREVGEATALNLANHFGSLEAIRQAT----------FEQLKEVQDVGEVVANR 575

Query: 612 IVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           IV F+Q P N+  VE L+ +          + V + +++K +V TGTL ++ R +A+  +
Sbjct: 576 IVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDKNVVLTGTLTQLTRDEAKALL 635

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             LG  VS  +S KTD +I G+  GSKL KAQ+LG++I++E+QF+ L
Sbjct: 636 QSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIEL 682


>gi|157961514|ref|YP_001501548.1| DNA ligase, NAD-dependent [Shewanella pealeana ATCC 700345]
 gi|190359287|sp|A8H376|DNLJ_SHEPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157846514|gb|ABV87013.1| DNA ligase, NAD-dependent [Shewanella pealeana ATCC 700345]
          Length = 668

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 380/711 (53%), Gaps = 50/711 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + E++ L  E++ H+  YY    P I D+EYD L  R  A+    P+  R   P+ 
Sbjct: 1   MPAIQNEIAQLTAELNQHNYRYYVDDSPSIPDAEYDRLLNRLKALETEHPEFCR---PDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE      ++ H  P LSL+ +++ ++   F  RI      K    + +  EPK
Sbjct: 58  PTQRVGGEALAKFEQIKHLKPMLSLDNVFDEQEFTAFNQRIVD----KTGKDLSYCCEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  ++I Y  G F  AA RGDG +GED++  +R I +IP  L   N P ++EVRGEV 
Sbjct: 114 LDGLAVSIVYRDGVFERAATRGDGQTGEDITENVRTIKSIPLTLRGDNFPPLVEVRGEVI 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT---SE 248
           +    F ALN+     G K + NPRNAA+G LR+L+     +R L F+ + LG     + 
Sbjct: 174 MPHKAFDALNERARVKGDKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPETW 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A   Y  L+++R  G PV+  VR   T   +++YY +++  RS+L ++IDG+V KV++
Sbjct: 234 ELADSHYGQLEQLRSWGVPVSQEVRGCETVAEVMAYYYDIQQRRSSLEFEIDGVVVKVNQ 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q  LG  A++PRW  + KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG  +
Sbjct: 294 IAHQLSLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            ++VGD ++++RAG+VIP++V ++  +R  DA+  
Sbjct: 354 SNATLHNADEIARL-----------GVKVGDTIIIRRAGDVIPQIVAVVAEKRPDDAKDI 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+C S V R          A  RCTGGL C AQ+ E +KHF SR A +I+G+G 
Sbjct: 403 VFPAHCPVCDSEVERVEGE------AVTRCTGGLFCEAQRKEAIKHFASRKALDIDGMGD 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L        + +  +   G  S T L  +I   +  
Sbjct: 457 KVVEQLIDKE----LVESPADLFRLTA------SAMTMLERMGMKSATKLVAAIEVAKQT 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF+++LGIR VG   A +LA Y+ + +                    I+V  VG I+
Sbjct: 507 TFARFLYALGIREVGEATAANLAAYFKTLEALKAA----------SAEEFIKVDDVGTIV 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           A  +  F   P N+  ++ L++                 ++ +  V TGTL ++ R+ A+
Sbjct: 557 AAHLAHFLAQPHNLEVIDKLVEAGIHWPAVEEVAEEDLSLKGQTWVLTGTLTQLNRNDAK 616

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+ TD ++ G   GSKL KAQ+LGVK+++EE  + +L
Sbjct: 617 AKLQALGAKVAGSVSKNTDCLVAGAAAGSKLTKAQELGVKVIDEEALIAIL 667


>gi|304317508|ref|YP_003852653.1| DNA ligase, NAD-dependent [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779010|gb|ADL69569.1| DNA ligase, NAD-dependent [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 659

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 231/710 (32%), Positives = 377/710 (53%), Gaps = 52/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++IE+    +  L+ ++++H+  YY   +P I D EYD + R    +    P+      P
Sbjct: 1   MTIEE---RIKELKDKLNHHNYMYYVLDRPEISDYEYDMMMRELIKLEEEHPEFK---TP 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE        TH +   SL   ++  +LR F  R+           + + +E
Sbjct: 55  DSPTQRVGGEPVKEFEPFTHVVVMQSLANAFSEGELRDFDRRVRSSVG-----DVEYVVE 109

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + + YE G F   + RGDG  GE+V+  ++ I +IP  L  N+   + VRGEV
Sbjct: 110 LKIDGLSVELIYENGIFTIGSTRGDGFVGENVTNNLKTIKSIPLRLKDNLN--LIVRGEV 167

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ +  F  LN+E    G   +ANPRNAA+G LR+LNP     R L+ FV  L +   + 
Sbjct: 168 FMPRASFEKLNEERELNGESLFANPRNAAAGSLRQLNPKITAKRDLDIFVFNLQRIEGVE 227

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   E L+ ++  GF V+  +++      ++   N +++IR +LPYD DG V KV++  
Sbjct: 228 LKTHVEALEFLKEQGFKVSPHLKKCKNIDEVIEDINYIRTIRDSLPYDTDGAVVKVNDLE 287

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG   + PRW I+ K+  ++  T++ DI +Q+GRTG LTP A LEPV I G++++ 
Sbjct: 288 KREILGSTVKDPRWAIAFKYPAERQKTKVKDIIVQVGRTGALTPTAILEPVKIAGSIVSR 347

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYIK            +DIR+GD V++++AGE+IP+VV ++V +R    + F  
Sbjct: 348 ATLHNEDYIK-----------EKDIRIGDTVIIQKAGEIIPEVVSVVVEDRKGHEKNFFM 396

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C +  VR          A  RCTG L C A+    + HF S+DA +I+GLG   
Sbjct: 397 PDTCPECGATTVRLPGE------AVTRCTG-LNCPAKLKRGIIHFASKDAMDIDGLGPAV 449

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +     +      I   AD++ L+            +   GD SV NL ++I + +   L
Sbjct: 450 IGQLLDN----HLIHNIADLYYLKYDDLIK------LDRMGDKSVKNLLNAIEESKGRDL 499

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +R IF LGI  +G++ A  LA ++ +  +  +            +  L  +  VG  +A 
Sbjct: 500 DRVIFGLGIDLIGSKAASILANHFKTMDSLEEA----------SFDELTNIEEVGPKMAD 549

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I+ F++  +N   ++ L +     + +  +N S+  +    V TGTL    R +A++ +
Sbjct: 550 SIIAFFKEKQNKEILDKLKEAGVNMVKKKSENTSNIFDGLTFVLTGTLSNYTRDEAKKLI 609

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + G  V+  +S+KT+ ++ G +PGSKL KAQQLGVK+++EE+F  +L+Q
Sbjct: 610 EERGGKVTGSVSKKTNYVVAGTDPGSKLSKAQQLGVKVIDEEEFENMLKQ 659


>gi|68057854|gb|AAX88107.1| DNA ligase [Haemophilus influenzae 86-028NP]
          Length = 679

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 244/709 (34%), Positives = 394/709 (55%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 10  MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 67  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RGDG +GED++A IR I  +P  L + N P  +EVRGEV+
Sbjct: 126 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 185

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   ++       +G+G    I  
Sbjct: 186 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGIDL 245

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y+ LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 246 PTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 305

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 306 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 365

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 366 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 414

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 415 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 468

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L        T +  +   G  S  N  +S+   ++ +L
Sbjct: 469 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGAKSAENALNSLENAKSTTL 518

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +RFIF+LGIR VG   A +LA ++ +                 +   L +VP VG+++A 
Sbjct: 519 DRFIFALGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVAN 568

Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ +         ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 569 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 628

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 629 LQQLGAKVSGSVSSKTDFVIAGDGAGSKLAKAQELNITVLTEEEFLAQI 677


>gi|161761269|ref|YP_248767.2| NAD-dependent DNA ligase LigA [Haemophilus influenzae 86-028NP]
 gi|166215835|sp|Q4QLJ0|DNLJ_HAEI8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|309973429|gb|ADO96630.1| NAD-dependent DNA ligase [Haemophilus influenzae R2846]
          Length = 670

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 244/709 (34%), Positives = 394/709 (55%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RGDG +GED++A IR I  +P  L + N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   ++       +G+G    I  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGIDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y+ LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L        T +  +   G  S  N  +S+   ++ +L
Sbjct: 460 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGAKSAENALNSLENAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +RFIF+LGIR VG   A +LA ++ +                 +   L +VP VG+++A 
Sbjct: 510 DRFIFALGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ +         ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDGAGSKLAKAQELNITVLTEEEFLAQI 668


>gi|291613759|ref|YP_003523916.1| DNA ligase, NAD-dependent [Sideroxydans lithotrophicus ES-1]
 gi|291583871|gb|ADE11529.1| DNA ligase, NAD-dependent [Sideroxydans lithotrophicus ES-1]
          Length = 701

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 251/738 (34%), Positives = 395/738 (53%), Gaps = 64/738 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +   +  + L ++I+ +D  YY    P I D+EYD L R   A+    P+L  S   
Sbjct: 1   MINQDVTRRAALLRKQIAEYDYWYYVKDMPRIPDAEYDKLFRELQALEAQHPELLAS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQK-KDDNSIFF 128
           + P  ++GG+       V H++P LS+    +I D     F  R+ R     ++D  I +
Sbjct: 58  DSPTQRVGGKPLDMFQPVRHAVPMLSIRTETDISDQGAIAFDARVRRELGLNENDPPIEY 117

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E K DG  + +RYE+G+ V AA RGDG +GEDV+  +R I  IP  L    P ++EVR
Sbjct: 118 VCELKFDGLALNLRYEQGRLVQAATRGDGETGEDVTQNVRTIHQIPLSLEGMCPGVLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-- 245
           GEVY+++ DF   N+     G     NPRN A+G +R+L+P     R L FF +GLG+  
Sbjct: 178 GEVYMARPDFERYNERQRQQGLPTLVNPRNGAAGSIRQLDPALAARRPLKFFAYGLGEKV 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
               + +    +L ++   GFPV++  R  +   G+V ++  ++++R +LP+DIDG+VYK
Sbjct: 238 EGWDWRETHKGVLDQLEAWGFPVSHECRVVHGAQGLVEFHRRIEAMRDSLPFDIDGVVYK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  +LQ++LG  +R PRW ++HKF  ++  TRL  I+IQ+GRTG LTPVA+LEPV +GG
Sbjct: 298 VNSIALQEKLGFVSREPRWAVAHKFPAEEQVTRLNGIEIQVGRTGKLTPVAKLEPVFVGG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++NATLHNE  I+            + I +GD V+V+RAG+VIP+VV ++   +    
Sbjct: 358 TTVSNATLHNEGEIRR-----------KGIHIGDMVIVRRAGDVIPEVVGVVPTMKVEPT 406

Query: 426 QP------------------FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
            P                  F  P+ CP+C S VVR+         A  RCTGGL C+AQ
Sbjct: 407 IPPSNTINLELTAPSPTLSAFMMPTSCPVCGSHVVREEGE------ADARCTGGLFCAAQ 460

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
           + + + HF  R A +IEGLG + +D             I   +  L   +  ++  +  +
Sbjct: 461 RKQAILHFAGRRAMDIEGLGDKLVDQLVDEN-------IIHSLSDLYDEKVLNSQTLAAL 513

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
               + S  N+ D++ K ++ +L RF+F+LGIRHVG   A+ LA+++   +   Q     
Sbjct: 514 DRMAEKSAQNIVDALEKSKSTALNRFLFALGIRHVGESTAKDLARHFGKLEAIMQA---- 569

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SS 645
                 +   L+ VP VG ++AQ+IV+F+    N   V+ L + +      HE +     
Sbjct: 570 ------NVEQLLAVPDVGPVVAQSIVDFFGEAHNREVVQQL-RILGVHWAEHEGSSVREL 622

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +  K  V TGTL  + R +A+  +  LGA V+  +S+KTD ++ G   GSKL+KA++L 
Sbjct: 623 PLSGKTFVLTGTLANLSRDEAKSRLEALGAKVAGSVSKKTDCVVAGVEAGSKLDKARELN 682

Query: 706 VKIMNEEQFLFLLQQYNT 723
           V + +E+Q    L++Y  
Sbjct: 683 VPVWDEQQLFDQLKEYEK 700


>gi|254360665|ref|ZP_04976814.1| DNA ligase (NAD(+)) [Mannheimia haemolytica PHL213]
 gi|153091205|gb|EDN73210.1| DNA ligase (NAD(+)) [Mannheimia haemolytica PHL213]
          Length = 685

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 401/707 (56%), Gaps = 46/707 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  +++ ++ Q +  ++  Y+    P + D+EYD L      +    P+L      + P 
Sbjct: 17  ELVEKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELI---SADSPT 73

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +      +VTH IP LSL+  ++ EDL  F+ R+  +        + F  EPK+D
Sbjct: 74  QRVGAKPLAGFAQVTHEIPMLSLDNAFSDEDLDGFLRRMESYITASPSQ-LEFCCEPKLD 132

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYIS 194
           G  ++I YE G    AA RGDG +GE+++A IR I  IP    + N P  +EVRGEV++ 
Sbjct: 133 GLAVSILYENGILTRAATRGDGTTGEEITANIRTIRNIPLKLNTTNPPARLEVRGEVFMP 192

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFA 251
           ++ F  LN++ +A G K +ANPRNAA+G LR+L+P    +     N +  G+ ++ +   
Sbjct: 193 QSGFNELNEKALAKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELP 252

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              +E LQ ++ LG PVNN +R       +++YY E+++ R TL YDIDG V KV++ +L
Sbjct: 253 ATHFERLQWLKSLGIPVNNEIRLVQGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIAL 312

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG  +RS RW I++KF  ++  T L ++  Q+GRTG +TPVA+LEPV + G  ++NA
Sbjct: 313 QEQLGFISRSSRWAIAYKFPAQEEMTILKEVGFQVGRTGAITPVAKLEPVFVAGVTVSNA 372

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            I +GD V+++RAG+VIP++  +++  R  +A+   FP
Sbjct: 373 TLHNGDEIERL-----------GIVIGDTVIIRRAGDVIPQITGVMLERRPENAKKIEFP 421

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CPIC S V R          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ +
Sbjct: 422 TACPICHSAVTRVEGE------AVARCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLI 475

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     I  PAD+F L        T +  +   G+ S  N  +SI K +N +L 
Sbjct: 476 EQLMARE----LIETPADLFKL------DHTTLMRLERMGEKSAQNALNSIEKAKNTTLP 525

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF+FSLGIR VG   A +LA ++ S +   Q            +  L  V  VG+++A  
Sbjct: 526 RFLFSLGIREVGEATALNLANHFGSLEAIRQAT----------FEQLKEVQDVGEVVANR 575

Query: 612 IVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           IV F+Q P N+  VE L+ +          + V + +++K +V TGTL ++ R +A+  +
Sbjct: 576 IVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDKNVVLTGTLTQLTRDEAKALL 635

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             LG  VS  +S KTD +I G+  GSKL KAQ+LG++I++E+QF+ L
Sbjct: 636 QSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIEL 682


>gi|144899097|emb|CAM75961.1| NAD-dependent DNA ligase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 693

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 289/716 (40%), Positives = 426/716 (59%), Gaps = 30/716 (4%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I I+AL+  +AR E S+L +++   D  Y+Q   P + D+ YDA K R  AI   FP+LA
Sbjct: 3   IEIDALTPFEARIEASALREKLIRWDLAYHQADAPEVDDATYDAAKLRLLAIEARFPELA 62

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
                  P  KIG        KV H +P LSL+  ++ +D+R+F  RI RF     D  I
Sbjct: 63  AG----SPTAKIGAPAAEGFGKVRHGVPMLSLDNAFSEDDVREFEGRIRRFLALPPDQII 118

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT--IPRVLSLNIPEI 184
            F  EPKIDG  I++RYE G+FV AA RGDG  GEDV+A IR +           + P++
Sbjct: 119 AFVAEPKIDGLSISLRYENGQFVRAATRGDGSEGEDVTANIRTLIRRGKIPERFDDAPDL 178

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           IEVRGE+Y++K DFLALN    A G KP+ANPRNAA+G LR+LNP    +R L+ F + L
Sbjct: 179 IEVRGEIYMTKADFLALNQRQEAAGDKPFANPRNAAAGSLRQLNPRVTASRELSTFFYAL 238

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVR-QANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           G+ + I     +E L ++   GFP         N    ++  Y  ++ +R++L +DIDG 
Sbjct: 239 GEHTTIKQNTHFEFLNQLTKWGFPCALQYISLYNNIDEMIQGYKNLQDLRASLDFDIDGY 298

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYKV+ F  Q++LG  +RSPRW I+HKF  +QA+T L  I+IQ+GRTG LTPVA L PVN
Sbjct: 299 VYKVNRFDWQQRLGFVSRSPRWAIAHKFPAEQATTLLERIEIQVGRTGALTPVAHLTPVN 358

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG +++ A+LHNED I             + +R GD V+++RAG+VIP+VV +++++  
Sbjct: 359 VGGVVVSRASLHNEDEIIR-----------KGVREGDTVIIQRAGDVIPQVVGVVMDKPR 407

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             A  F FP  CP+C S  VR  +          RC+GGLAC AQ  ERL+HFVSR+AF+
Sbjct: 408 G-AADFLFPDTCPVCGSHAVRTGDE------VIRRCSGGLACKAQVKERLRHFVSRNAFD 460

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGLG + +DF  + E     I  PADIF L+        +++N  G+G+  V  L+ +I
Sbjct: 461 IEGLGDENIDFLCEGE----WINKPADIFRLEAANAGRLQRLQNYKGWGEKKVAKLFAAI 516

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
             RR I+LER I++LGIR VG   A+ LA++Y S+  + + +   +   ND +  LI + 
Sbjct: 517 TARRTIALERLIYALGIRQVGEATAKRLARHYGSFAVWRESMLAAVPRENDSYHDLISIE 576

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G  +A  I+ F+    N+ A++ L  +++ +  +  +  +S +  K +VFTG L  + 
Sbjct: 577 DIGPAVANDILAFFAEDHNVAALDDLAAQLTINDAQKIEAGNSPVSGKSVVFTGELVAMT 636

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+     LGA V   +S+KTD ++ G   GSKL +A++LG+ +++E+Q+L L+
Sbjct: 637 RAEAKAKAEMLGAKVVGSVSKKTDYVVAGPGAGSKLAEAEKLGLTVLSEQQWLELI 692


>gi|261493319|ref|ZP_05989845.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261310963|gb|EEY12140.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 685

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 259/707 (36%), Positives = 402/707 (56%), Gaps = 46/707 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  +++ ++ Q +  ++  Y+    P + D+EYD L      +    P+L      + P 
Sbjct: 17  ELVEKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELI---SADSPT 73

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +      +VTH IP LSL+  ++ EDL  F+ R+  +        + F  EPK+D
Sbjct: 74  QRVGAKPLAGFAQVTHEIPMLSLDNAFSDEDLDGFLRRMESYITASPSQ-LEFCCEPKLD 132

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYIS 194
           G  ++I YE G    AA RGDG +GE+++A IR I  IP    + N P  +EVRGEV++ 
Sbjct: 133 GLAVSILYENGILTRAATRGDGTTGEEITANIRTIRNIPLKLNTTNPPARLEVRGEVFMP 192

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFA 251
           ++ F  LN++ +A G K ++NPRNAA+G LR+L+P    +     N +  G+ ++ +   
Sbjct: 193 QSGFNELNEKALAKGEKTFSNPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELP 252

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              +E LQ ++ LG PVNN +R       +++YY E+++ R TL YDIDG V KV++ +L
Sbjct: 253 ATHFERLQWLKSLGIPVNNEIRLVQGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIAL 312

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG  +RS RW I++KF  ++  T L ++D Q+GRTG +TPVA+LEPV + G  ++NA
Sbjct: 313 QEQLGFISRSSRWAIAYKFPAQEEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNA 372

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            I +GD V+++RAG+VIP++  +++  R  +A+   FP
Sbjct: 373 TLHNGDEIERL-----------GIVIGDTVIIRRAGDVIPQITGVVLERRPENAKKIEFP 421

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CPIC S V R          A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ +
Sbjct: 422 TACPICHSAVTRVEGE------AVARCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLI 475

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     I  PAD+F L        T +  +   G+ S  N  +SI K +N +L 
Sbjct: 476 EQLMARE----LIETPADLFKL------DHTTLMRLERMGEKSAQNALNSIEKAKNTTLP 525

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF+FSLGIR VG   A +LA ++ S +   Q            +  L  V  VG+++A  
Sbjct: 526 RFLFSLGIREVGEATALNLANHFGSLEAIRQAT----------FEQLKEVQDVGEVVANR 575

Query: 612 IVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           IV F+Q P N+  VE L+ +          + V + +++K +V TGTL ++ R +A+  +
Sbjct: 576 IVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDKNVVLTGTLTQLTRDEAKALL 635

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             LG  VS  +S KTD +I G+  GSKL KAQ+LG++I++E+QF+ L
Sbjct: 636 QSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIEL 682


>gi|56479083|ref|YP_160672.1| NAD-dependent DNA ligase [Aromatoleum aromaticum EbN1]
 gi|81356392|sp|Q5NYU3|DNLJ_AZOSE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56315126|emb|CAI09771.1| NAD-dependent DNA ligase [Aromatoleum aromaticum EbN1]
          Length = 681

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 259/714 (36%), Positives = 375/714 (52%), Gaps = 55/714 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +  + L +E+  HD  YY    P + D+EYD L R  DA+    P+L     P+ P  ++
Sbjct: 9   ERAAQLRRELEAHDHAYYVLDAPTVPDAEYDRLFRELDALERRHPELLV---PDSPTRRV 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIED-----LRKFITRIYRFWQKKDD-NSIFFTLEP 132
           GG     L  V H++P LS   I    D     +  F TR+    +       + +  E 
Sbjct: 66  GGAPVPGLVPVRHAVPMLS---IRTETDTTSGGVIAFDTRVRNALELGPHAPPVEYLGEL 122

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K DG  I++RYE G  V AA RGDG++GEDV+  +R I  IP  L    P +IEVRGE+Y
Sbjct: 123 KFDGLAISLRYENGMLVRAATRGDGYTGEDVTHSVRTIRQIPLRLPGRPPALIEVRGEIY 182

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS---- 247
           + ++ F  LN      G K + NPRNAA+G +R+L+     R   +FF +G G+      
Sbjct: 183 MRRDAFERLNARQSETGGKVFVNPRNAAAGAVRQLDARIAARRPLSFFAYGFGEIGESGG 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 Q EML  +  LG PV      A+   G++++++ + + R +LPYDIDG+VYKV+
Sbjct: 243 WNMPATQGEMLDALDALGIPVCEHRVVASGPDGLIAFHDRIAAARDSLPYDIDGVVYKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            F LQ++LG   R PRW ++HK+  ++  T L+DI+IQ+GRTG LTPVARL+PV +GG  
Sbjct: 303 RFDLQRRLGFVTREPRWAVAHKYPAQEEITELVDIEIQVGRTGALTPVARLKPVFVGGVT 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNATLHNE+ I+            + + +GD+V+V+RAG+VIP++V  +V  R+   +P
Sbjct: 363 VTNATLHNEEEIQR-----------KGLLIGDQVIVRRAGDVIPQIVAPVVERRNGSERP 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP+C S   +  +       A  RC+GGL C AQ+ + L HF  R A +IEGLG
Sbjct: 412 FVMPQTCPVCGSHAEKQPDE------AVTRCSGGLFCPAQRKQALLHFAGRRAMDIEGLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +D           +  PAD++ L         K+ N+    D S  NL  +I K R+
Sbjct: 466 DKLVDQLVD----GGIVSTPADLYRL------GLVKLANLPRMADKSAANLLAAIEKSRH 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RFIF+LGIR+VG   AR LA+++ S                 D   L +V  VG I
Sbjct: 516 ATLARFIFALGIRNVGEATARELARHFGSLDALMDA----------DIERLQQVADVGPI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           +A +I  F+    N   +E L         G            K  V TG L  + R  A
Sbjct: 566 VAHSIAGFFAEMHNREVIEQLRAAGVHWDEGVPAVAADGPASGKTFVLTGALPTMSRDDA 625

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +   G  VS  +S+KTD ++ G   GSKL KAQ+LGV I++E+    LL+Q
Sbjct: 626 KALIESHGGKVSGSVSKKTDYVVAGAEAGSKLAKAQELGVAILDEDGLRRLLEQ 679


>gi|170727191|ref|YP_001761217.1| DNA ligase, NAD-dependent [Shewanella woodyi ATCC 51908]
 gi|254781418|sp|B1KJT5|DNLJ_SHEWM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169812538|gb|ACA87122.1| DNA ligase, NAD-dependent [Shewanella woodyi ATCC 51908]
          Length = 670

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 262/710 (36%), Positives = 380/710 (53%), Gaps = 50/710 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A +E+  L + I+ H+  YY    P + D+EYD L  R   +    P L     P  P  
Sbjct: 3   AIEEIKQLTETINEHNHSYYVEDSPSVPDAEYDRLINRLKQLEGENPHLCL---PTSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG       ++TH  P LSL+ +++ E+   F  RI      K   +  F  EPK+DG
Sbjct: 60  RVGGMALAKFDQITHLKPMLSLDNVFSEEEFEAFYKRISD----KTSEAPTFCCEPKLDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195
             ++I Y  G +  AA RGDG +GED+S  +R I +IP  L   N P ++EVRGEV + K
Sbjct: 116 LAVSILYRDGVYERAATRGDGTTGEDISENVRTILSIPLKLRGDNFPPLLEVRGEVIMPK 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA--- 251
             F ALND   A G K + NPRNAA+G LR+L+     +R L F+ + LG          
Sbjct: 176 KAFDALNDRARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPETWALA 235

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              Y+ L ++R  GFPV+  V+Q      +V+YY ++ + R +L Y+IDG+V KVD    
Sbjct: 236 DTHYDQLMQLRAWGFPVSAEVKQCGDVSSVVAYYTDIMTRRDSLDYEIDGVVIKVDSIEH 295

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q QLG  A++PRW  + KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG  ++NA
Sbjct: 296 QGQLGFVAKAPRWATAFKFPAQEEVTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNA 355

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L            ++VGD V+V+RAG+VIP++V I+ ++R  DA+   FP
Sbjct: 356 TLHNADEIARL-----------GVKVGDTVIVRRAGDVIPQIVAIVADKRPDDAREIEFP 404

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S V R          A  RCTGGL C AQ+ E +KHF SR A +I+G+G + +
Sbjct: 405 DTCPVCNSMVERVEGE------AVARCTGGLFCEAQRKEAIKHFASRKALDIDGMGDKVV 458

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +     E     +  PAD+F L        + I  +   G  S TNL  +I   +  +  
Sbjct: 459 EQLIDKE----LVESPADLFKLTA------SAITMLDRMGMKSATNLVAAIEVAKTTTFS 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF++ LGIR VG   A +LA Y+ +                 D  S I+V  VG I+AQ 
Sbjct: 509 RFLYGLGIREVGEATAANLANYFKTLDKLKAA----------DAESFIKVDDVGTIVAQH 558

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYV 670
           +  F+  P N+  V+ L++         E    S  ++ +  V TGTL ++ R+ A+  +
Sbjct: 559 LTHFFAQPHNLEVVDKLIEAGVNWPEIEEVAEESLSLKGQTWVLTGTLTQLNRNDAKARL 618

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             LGA V+  +S+ TD ++ G+  GSKL KAQ LGVK+++EE  L LL  
Sbjct: 619 QALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQDLGVKVIDEEALLQLLSD 668


>gi|134094553|ref|YP_001099628.1| DNA ligase [Herminiimonas arsenicoxydans]
 gi|166215813|sp|A4G4R4|DNLJ_HERAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|133738456|emb|CAL61501.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Herminiimonas
           arsenicoxydans]
          Length = 696

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 252/716 (35%), Positives = 370/716 (51%), Gaps = 46/716 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P E           + L  E++ H+  YY    PI+ D+EYD L R   A+  + P+L  
Sbjct: 18  PKEIPDASDPSARAAWLRSELNRHNYAYYVLDNPIVPDAEYDQLFRELQALEASHPELLV 77

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
               + P  ++G     +   VTHS+P LSL   +  ED+  F  R+      ++   + 
Sbjct: 78  F---DSPTQRVGALALTAFPPVTHSVPMLSLGNGFEDEDVLAFDKRVSEGLNSRE--EVE 132

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIE 186
           +  E K DG  I +RYE G  V AA RGDG +GE+V+A IR +  IP    + N P++++
Sbjct: 133 YATELKFDGLAINLRYEDGVLVQAATRGDGATGENVTANIRTVRAIPLRLHTNNPPKVLD 192

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           VRGEV + K D   LN      G K +ANPRNAA+G LR+L+      R L FF +G+G 
Sbjct: 193 VRGEVMMYKADLAKLNARQRDAGAKEFANPRNAAAGSLRQLDSRITAQRSLRFFSYGIGL 252

Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                       +L     LG PV +         G++ +Y      R  LPY+IDG+VY
Sbjct: 253 LEGADMPASHSALLDWYAELGIPVCSERAVVRGVQGLLEFYKATSEKRPQLPYEIDGVVY 312

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+    Q QLG  +R+PR+ I+HKF  ++A T + DI++Q+GRTG +TPVARL PV +G
Sbjct: 313 KVNRVDQQLQLGFVSRAPRFAIAHKFPAEEALTTVQDIEVQVGRTGAITPVARLAPVLVG 372

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHNED ++            +DI++GD V+V+RAG+VIP+VV  +   R   
Sbjct: 373 GVTVTNATLHNEDEVRR-----------KDIQIGDTVIVRRAGDVIPEVVAFVPERRPAS 421

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNI 483
           A+PF  PS CP+C S +VR  +       A  RC+G  + C+AQ+   L HFVSR A ++
Sbjct: 422 ARPFIMPSSCPVCGSPIVRLEDE------AIARCSGGWVKCAAQRKGGLLHFVSRRAMDV 475

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG Q ++           I   AD++ L          +  +    D S  N+ D++ 
Sbjct: 476 EGLGDQLVEQLVDK----HIITTAADLYKL------GFRALAELDRMADKSAQNVLDALE 525

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +  +L RFI++LGIRHVG   A+ LA+++ +     Q               L+ V  
Sbjct: 526 KSKRTTLARFIYALGIRHVGEATAKELARHFGNLDALLQA----------SPEQLLEVAD 575

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +G ++A +I  F+ +  NI  +E L            +N    +  K  V TGTL  + R
Sbjct: 576 IGPVVAASITAFFTDAMNIELIEQLRAAGVTWPEHVVENRPRPLAGKTFVLTGTLPTLSR 635

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             A E +   G  V+  +S+KT  ++ G   GSKL KA++LGV I++E   L LL 
Sbjct: 636 DAAAEKIEAAGGKVAGSVSKKTSYVVAGAEAGSKLAKAEELGVTILDETGLLQLLD 691


>gi|90410985|ref|ZP_01218999.1| DNA ligase [Photobacterium profundum 3TCK]
 gi|90328198|gb|EAS44509.1| DNA ligase [Photobacterium profundum 3TCK]
          Length = 697

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 243/716 (33%), Positives = 396/716 (55%), Gaps = 48/716 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
             +S +  +++L +L ++++YH   YY    P I D+EYD + ++  A+    P+L    
Sbjct: 25  SEMSTD-IQQQLDTLREQLAYHGHRYYVEDNPEIPDAEYDRMMQQLLALEADHPELM--- 80

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG    S  +V H +P LSL+  +N E+L  F  R+           + + 
Sbjct: 81  SVDSPSQRVGGMPLDSFTQVKHELPMLSLDNAFNDEELHAFEKRLLDRL--ITAGQVSYC 138

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            EPK+DG  +++ YE G  V AA RGDG +GE+++  +R I +IP  L     P  +EVR
Sbjct: 139 CEPKLDGLAVSLMYENGVLVQAATRGDGATGENITTNVRTIRSIPLKLQGEGWPLRLEVR 198

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247
           GEV++ K  F  LN   +  G K +ANPRNAA+G LR+L+         +F+ + +G   
Sbjct: 199 GEVFMPKKGFDELNARALKKGDKAFANPRNAAAGSLRQLDSKIAATRPLSFYAYSVGVVE 258

Query: 248 -EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
               A  QY+ L +++  G P+   +RQ  T   +++YY ++   R +L Y+IDG+V KV
Sbjct: 259 GMDLADSQYDRLVQLKGWGIPMCPEIRQLKTIKDVIAYYQDIGERRQSLSYEIDGVVIKV 318

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEP+ +GG 
Sbjct: 319 DDVETQEQLGFVARAPRWAIAYKFPAQEEMTLLNNVEFQVGRTGAITPVAKLEPIFVGGV 378

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN D +  L            + +GD V+++RAG+VIP++V ++ + R  +A 
Sbjct: 379 TVSNATLHNADEVARL-----------GVMIGDTVIIRRAGDVIPQIVSVVESRRPANAL 427

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              FP  CP+C+S V R          A  RC+GGL C AQ+ E LKHFVSR A +++G 
Sbjct: 428 SIIFPETCPVCKSNVERVEGE------AVARCSGGLFCQAQRKEALKHFVSRKALDVDGC 481

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ ++     E     +  PA +F L      S   +  +   G  S   L DS+   +
Sbjct: 482 GEKVIEQLVDRE----MVTTPAGLFKL------SAGVVTVLDRMGPKSAQKLVDSLANSK 531

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI+SLGIR VG   A +LA ++ + +                   L+ VP VG+
Sbjct: 532 ETTLPRFIYSLGIREVGEATAANLANHFETLEAITAASK----------EQLLVVPDVGE 581

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           ++A  ++ F++   N+  VE L+      P+I + E+ V   ++ K +V TG+L ++ R 
Sbjct: 582 VVANNLLNFFREAHNMDVVEDLIAVGIHWPAIEKPEEGVELPLDGKVVVLTGSLSQLTRS 641

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            A+  +  LGA V+  +S+KTD+++ G+  GSKL KAQ+L ++I +E+  + L+ +
Sbjct: 642 DAKAALQALGAKVTGSVSKKTDLLVAGEAAGSKLTKAQELDIEIWDEQALVDLMNR 697


>gi|310823543|ref|YP_003955901.1| DNA ligase [Stigmatella aurantiaca DW4/3-1]
 gi|309396615|gb|ADO74074.1| DNA ligase [Stigmatella aurantiaca DW4/3-1]
          Length = 673

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 252/714 (35%), Positives = 400/714 (56%), Gaps = 52/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + ++ A      L +E+++H+  YY    P + D+EYD L R    +   FP LA    P
Sbjct: 1   MDLKTAETRARDLRRELAHHNHRYYVLDSPEVSDAEYDRLMRELQGLEAQFPALA---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE      KV H  P LSL  ++N E+  +F  RI +     D   + +  E
Sbjct: 58  DSPTQRVGGEAAEKFAKVVHRAPMLSLANVFNDEEFTEFDERIRKVVGPAD---VTYVCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP----RVLSLNIPEIIEV 187
           PK+DG  IT+RYE G+F+  A RGDG +GEDV+  +R +  +P        + +P ++EV
Sbjct: 115 PKLDGLAITLRYENGRFLQGATRGDGTTGEDVTGNLRTVRPLPLELLPEAGMAVPPVLEV 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEV+I K DF  LN++    G   +ANPRNAA+G LR+L+P    +R L+  ++ +  T
Sbjct: 175 RGEVFIRKEDFKKLNEKREEEGEALFANPRNAAAGSLRQLDPKITASRPLSVSLYEIVPT 234

Query: 247 S-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                       L+ ++ LG PVN+  R A    G+ + Y      R  L +++DG+V K
Sbjct: 235 EGVPAFDTHTAKLEYLQKLGLPVNHHER-AQGLEGVRAAYQAALKGRHALKFEVDGMVVK 293

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD    +++LG+ ++SPRW +++KF  ++ STR+  I++Q+GRTG LTPVA L+PV +GG
Sbjct: 294 VDSEDQRRRLGQVSKSPRWAVAYKFPPEEESTRVEAIEVQVGRTGALTPVAHLKPVKVGG 353

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ ATLHNED ++            +D+R GD V V+RAG+VIP++V ++ N+R  D+
Sbjct: 354 VTVSRATLHNEDELRR-----------KDVRQGDTVFVRRAGDVIPEIVSVVPNQRPADS 402

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +P+ FP  CP+C ++ V+D         A  RCTG  +C AQ +E+++HF SR A +I+G
Sbjct: 403 KPYEFPQHCPVCGAQAVKDEE------GAIIRCTGA-SCPAQLVEKVRHFASRPAMDIDG 455

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G +           +  ++  AD++ L R Q  S      +   G+ S  NL  +I + 
Sbjct: 456 VGDKLAAQLV----ASGRVKTFADLYALTREQLLS------LERMGEKSADNLLAAIERS 505

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  +  RF+++LGIRHVG   A++LA+ +                   D  +L RV  VG
Sbjct: 506 KQTTQRRFLYALGIRHVGEATAKALAEAFPEAPLLYTA----------DMEALTRVKDVG 555

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +AQ +  F+Q P+N  A++ALL     +    + N       K +V TG +  + R +
Sbjct: 556 PTMAQVLHAFFQEPQNRAAIDALLAAGV-TPAPPQVNTGGPFAGKTVVLTGGMTGMSRDQ 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E + + G  VS  +SRKTD ++ G++ GSKL+KAQ+LGV++++E+ FL LLQ
Sbjct: 615 AKEEIERRGGKVSGSVSRKTDFVVAGEDAGSKLKKAQELGVRVLDEQAFLKLLQ 668


>gi|149203841|ref|ZP_01880810.1| DNA ligase, NAD-dependent [Roseovarius sp. TM1035]
 gi|149142958|gb|EDM31000.1| DNA ligase, NAD-dependent [Roseovarius sp. TM1035]
          Length = 717

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 293/715 (40%), Positives = 433/715 (60%), Gaps = 15/715 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + +E L+  +A+ EL  L   ++  +  Y+    P I D+ YDALK R  AI   FP L 
Sbjct: 16  LAVEDLTESEAQAELGRLAALLAAANRAYHTEDAPEITDAAYDALKARNAAIEARFPTLK 75

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R    +   +++G        KV HSI  LSL   +  ED+ +F +RI R+    DD  +
Sbjct: 76  RD---DSASDQVGAAPLDGFAKVAHSIRMLSLGNAFEPEDVAEFDSRIRRYLGLPDDAPL 132

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +T EPKIDG  +++RY +G+ V AA RGDG  GE+V+A  R I  IP  L+   PEI+E
Sbjct: 133 AYTAEPKIDGLSLSLRYVQGRLVQAATRGDGEVGENVTANARTITDIPESLTGA-PEILE 191

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+S  DF ALN        K +ANPRNAA+G LR+L+      R L FF +  G+
Sbjct: 192 VRGEVYMSHADFAALNARQAEKSDKQFANPRNAAAGSLRQLDAKITAARPLRFFAYSWGE 251

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A+ Q   + +++ LGF  N      +    ++ +Y  ++  R+TL YDIDG+VYK
Sbjct: 252 VSAPLAETQMGAIARLKALGFQTNPLTVLCDGVEALLEHYARIEQARATLGYDIDGVVYK 311

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+  LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG
Sbjct: 312 VDDLGLQARLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGG 371

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYI G D+ G+V+RGG+DIRVGD V V RAG+VIPKV D+ +++R   A
Sbjct: 372 VVVSNATLHNEDYIAGRDSKGEVIRGGKDIRVGDWVQVYRAGDVIPKVADVDLSKRAEGA 431

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P+ FP+ CP C S  VR+         A  RC GGL C AQ +E+LKHFVSR AF+IEG
Sbjct: 432 TPYVFPATCPECGSDAVREEG------DAVRRCVGGLICPAQAVEKLKHFVSRAAFDIEG 485

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F++       I+ PADIF LQ R  +   +++N  G+G+ S  NL+++I ++
Sbjct: 486 LGAKQVEQFYRD----GWIKEPADIFLLQERYGSGLQQLKNREGWGEKSAKNLFEAIEEK 541

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R I   R +F+LGIRHVG + +  +A+ Y ++  F   ++    +   +W  L+ +  VG
Sbjct: 542 RKIPFGRLLFALGIRHVGEQASTLIARNYGTWDEFIAAMDGAKDYEGPEWERLLGIDGVG 601

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            ++A+A+V  +  P    +++ L + ++       +   S +  K +VFTG+L+K+ R +
Sbjct: 602 TVMARALVGAFAEPHERGSIDRLTEYLTVQEAARPRTDGSPVAGKTVVFTGSLEKMTRAE 661

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+     LGA V+  +S KTD+++ G   GSK +KAQ LG++ ++E+ +L L+  
Sbjct: 662 AKARAEGLGAKVAGSVSAKTDLLVAGPGAGSKAKKAQDLGIETIDEDGWLTLIGD 716


>gi|145636448|ref|ZP_01792116.1| DNA ligase [Haemophilus influenzae PittHH]
 gi|145270273|gb|EDK10208.1| DNA ligase [Haemophilus influenzae PittHH]
          Length = 670

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 245/709 (34%), Positives = 394/709 (55%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MKNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RGDG +GED++A IR I  +P  L + N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250
           +S   F  LN   +    K +ANPRNAA+G LR+L+P   ++       +G+G    +  
Sbjct: 177 MSHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L        T +  +   G  S  N  +S+   ++ +L
Sbjct: 460 IEQLVDRE----LIHTPADLFKL------DLTTLTRLDRMGTKSAENALNSLENAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIFSLGIR VG   A +LA ++ +                 +   L +VP VG+++A 
Sbjct: 510 ARFIFSLGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ +         ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668


>gi|260580185|ref|ZP_05848015.1| DNA ligase, NAD-dependent [Haemophilus influenzae RdAW]
 gi|1574651|gb|AAC22753.1| DNA ligase (lig) [Haemophilus influenzae Rd KW20]
 gi|260093469|gb|EEW77402.1| DNA ligase, NAD-dependent [Haemophilus influenzae RdAW]
          Length = 679

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 243/709 (34%), Positives = 392/709 (55%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 10  MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 67  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RGDG +GED++A IR I  +P  L + N P  +EVRGEV+
Sbjct: 126 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 185

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   ++       +G+G    +  
Sbjct: 186 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 245

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 246 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 305

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 306 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 365

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 366 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 414

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 415 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 468

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L        T +  +   G  S  N  +S+   ++ +L
Sbjct: 469 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGAKSAENALNSLENAKSTTL 518

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +                 +   L +VP VG+++A 
Sbjct: 519 ARFIFALGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVAN 568

Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ +         ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 569 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 628

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 629 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 677


>gi|30995424|ref|NP_439257.2| NAD-dependent DNA ligase LigA [Haemophilus influenzae Rd KW20]
 gi|145638086|ref|ZP_01793696.1| DNA ligase [Haemophilus influenzae PittII]
 gi|166214918|sp|P43813|DNLJ_HAEIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145272415|gb|EDK12322.1| DNA ligase [Haemophilus influenzae PittII]
 gi|309751252|gb|ADO81236.1| NAD-dependent DNA ligase [Haemophilus influenzae R2866]
          Length = 670

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 243/709 (34%), Positives = 392/709 (55%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RGDG +GED++A IR I  +P  L + N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   ++       +G+G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L        T +  +   G  S  N  +S+   ++ +L
Sbjct: 460 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGAKSAENALNSLENAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +                 +   L +VP VG+++A 
Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ +         ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668


>gi|323495433|ref|ZP_08100510.1| NAD-dependent DNA ligase LigA [Vibrio brasiliensis LMG 20546]
 gi|323310356|gb|EGA63543.1| NAD-dependent DNA ligase LigA [Vibrio brasiliensis LMG 20546]
          Length = 669

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 253/711 (35%), Positives = 387/711 (54%), Gaps = 48/711 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S +Q +++L+ L + + YH   YY    P I D+EYD L R    I    P+L      
Sbjct: 1   MS-QQIQEKLNQLRESLHYHGVKYYVEDSPEIPDAEYDRLMRELMEIEAQHPELV---SL 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG        V H IP LSL+  ++  +L  F  R+         +   F  E
Sbjct: 57  DSPSQRVGGAPLDGFDSVRHEIPMLSLDNAFDDSELDAFHKRMSDRLSGTKLDV--FCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  +++ Y  G FV AA RGDG +GE+++  +R I  IP  L     PE +EVRGE
Sbjct: 115 PKLDGLAVSLLYVNGVFVQAATRGDGATGENITENVRTIKAIPLKLQGEGWPERLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249
           V++ K  F  LN++ +  G K + NPRNAA+G LR+L+      R L+F+ + +G     
Sbjct: 175 VFMPKEGFDKLNEQALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLSFYAYSVGVVEGA 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             ++  YE   +++  G P+    R       + +YY ++ + R  LPY+IDG+V KVD 
Sbjct: 235 TLSESHYERFLQLKGWGLPMCPETRLVANLEEVKAYYQDILTRRDALPYEIDGVVIKVDS 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q+QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  +
Sbjct: 295 IAAQEQLGFVARAPRWAIAYKFPAQEEITTLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            + VGD V+++RAG+VIP++V I+ + R  +A+  
Sbjct: 355 SNATLHNADEIERL-----------GVMVGDCVVIRRAGDVIPQIVSIVSDRRPENAREI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+C S V R          A  RC+GGL C AQ+ E LKHFVSR A +++GLG+
Sbjct: 404 VFPTNCPVCNSAVERVEGE------AVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGE 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L      S   I  +   G  S  N+ D++ K +  
Sbjct: 458 KVIEQLVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVDALVKAKET 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LAK++ + +      +            LI V  +G I+
Sbjct: 508 TLPRFLYSLGIREVGEATAANLAKHFKTLEAVQAASH----------DDLIEVQDIGAIV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  I  F+   +N   ++ L  +    P I   +++    +  K +V TG+L ++ R  A
Sbjct: 558 ASHITAFFAQDKNQMVIDDLRVQGVHWPDIEEKDQDAPQPLAGKVVVLTGSLSQLTRSDA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +  LGA V+  +S+KTDI+  G+N GSKL KAQ LG++I  EE  + L
Sbjct: 618 KAALEGLGAKVTGSVSKKTDILFAGENAGSKLAKAQDLGIEIRTEEDLIAL 668


>gi|92112835|ref|YP_572763.1| DNA ligase, NAD-dependent [Chromohalobacter salexigens DSM 3043]
 gi|122990589|sp|Q1QZP4|DNLJ_CHRSD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91795925|gb|ABE58064.1| DNA ligase, NAD-dependent [Chromohalobacter salexigens DSM 3043]
          Length = 691

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 243/714 (34%), Positives = 384/714 (53%), Gaps = 44/714 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            +  R+   +L Q++   +  YY    P I D+EYDAL R   ++    P+L     P+ 
Sbjct: 5   PQAVRERADTLHQQLDDANYQYYVEDDPRITDAEYDALLRELQSLEAEHPELK---TPDS 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G        +VTH++P LSL+  ++  +L  F+ R+     + D +++ F  EPK
Sbjct: 62  PTQRVGAAPAERFEEVTHAVPMLSLDNAFDDAELAAFVKRVADKL-ECDGDTLAFCCEPK 120

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  + + YE G+ V  A RGDG +GEDV+  +R I +IP  L  + IP +IEVRGEVY
Sbjct: 121 LDGLAVALVYENGRLVQGATRGDGRTGEDVTLNLRTIRSIPLKLRGDSIPPLIEVRGEVY 180

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGK-TSEIF 250
           +  + F ALND     G K +ANPRNAA+G LR+L+ +        F  + + +   E  
Sbjct: 181 MRHSGFEALNDRARENGDKVFANPRNAAAGSLRQLDSSIAAARPLEFCAYQVARLEGEDD 240

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A    + L+++R LGF  +  +       G++ + + +   R+ L YDIDG V KVD   
Sbjct: 241 AHSHSDYLKRLRTLGFRTSPLLDVVKGERGVIDFCHRLGEQRNGLDYDIDGAVIKVDSLR 300

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  +R+PRW I++K+  ++ +T L D+  Q+GR G LTPVA+LEPV + G  + N
Sbjct: 301 DQRELGFVSRAPRWAIAYKYPAQEQTTTLNDVVFQVGRVGTLTPVAKLEPVQVAGVTVAN 360

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIP++V ++ ++R    +    
Sbjct: 361 ATLHNMDEIERL-----------GVRIGDTVIVRRAGDVIPQIVGVVESQRPATTRAIEM 409

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S+  R           A RC+GGL C AQ+ E LKHF SR A +I+GLG++ 
Sbjct: 410 PEHCPVCGSQTERLEGE------VAARCSGGLFCPAQRKEALKHFASRRALDIDGLGEKL 463

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     ++ PAD+F L+  +         +    + S  NL +++   +  +L
Sbjct: 464 IDLLVERE----WVKTPADLFRLEAERL------AELPRLAEKSANNLVNALEAAKRTTL 513

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI+++GIR VG   A SLA+++ S Q  ++              +L  V  VG ++A+
Sbjct: 514 ARFIYAIGIREVGEATAASLARHFGSLQALSEA----------SLEALEAVEDVGPVVAR 563

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I  F++ P N   +E L                  +  +  V TGTL+ + R   +  +
Sbjct: 564 HIHTFFRQPHNQETLEDLQGVGVTWEEVEIAGRPQPLAGQTWVLTGTLESMTRDDGKARL 623

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             LGA VS  +S+KT  ++ G+  GSKLEKAQ LGV++++E +FL  L  + + 
Sbjct: 624 QALGAKVSGSVSKKTAGVVAGEAAGSKLEKAQNLGVEVIDEREFLQRLAHWESA 677


>gi|256822391|ref|YP_003146354.1| NAD-dependent DNA ligase [Kangiella koreensis DSM 16069]
 gi|256795930|gb|ACV26586.1| DNA ligase, NAD-dependent [Kangiella koreensis DSM 16069]
          Length = 667

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 251/708 (35%), Positives = 398/708 (56%), Gaps = 48/708 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +  K ++ L   +  ++  YY    P + D+EYD L R    I    P+L      + 
Sbjct: 1   MSELEKRVAELRVTLDNYNHQYYVLDDPSVPDAEYDRLLRELQQIESEHPELI---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G + +    +VTH +P LSL+   + ++L  F  R+       ++  I +  EPK
Sbjct: 58  PTQRVGAKPDNGFQEVTHELPMLSLDNAMSDDELVSFNKRVQDRLNTTEN--IEYVCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ YE G+ V  A RGDG +GE+++  +R I  IP  L     PE IE+RGEV+
Sbjct: 116 LDGLAVSLLYENGQLVRGATRGDGTTGENITLNVRTIRAIPLKLRGTETPERIEIRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF- 250
           + K  F +LN+E    G K +ANPRNAA+G LR+L+P+    R L+F+ + +G  S+ F 
Sbjct: 176 MPKAVFESLNEEAREQGAKSFANPRNAAAGSLRQLDPSITAKRQLSFYAYSMGLVSDDFK 235

Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A   ++ L++++  G PV++ ++      G ++Y+  +   R +L Y+IDG+V KV+  
Sbjct: 236 LANTHFDRLEQIKTFGLPVSSEIKLVKGAEGCLAYHQSISEKRDSLGYEIDGVVNKVNSI 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ++LG  AR+PRW I+HKF  ++  T+L+ +D Q+GRTG LTPVARLEPV++GG  ++
Sbjct: 296 ELQEELGFVARAPRWAIAHKFPAQEEMTQLIGVDFQVGRTGALTPVARLEPVSVGGVTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D IK L           D R+GD V+++RAG+VIP+VV II+ +R  +A+   
Sbjct: 356 NATLHNMDEIKRL-----------DARIGDTVIIRRAGDVIPQVVSIILEKRPSNAEIIL 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C S V R          AA RCTGGL CSAQ+ E +KHF SR A +I+GLG +
Sbjct: 405 TPEQCPVCNSPVERTEGE------AAIRCTGGLICSAQRKEAIKHFASRKAMDIDGLGDK 458

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++ F +       ++  +D++ ++     +      +   G+ S  NL  ++   +N +
Sbjct: 459 LVEIFAEK----GMVQSISDLYRIKAGDIAA------LDRMGEKSAENLIGALEHSKNTT 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L +F++SLGIR VG   A+++A ++L+     +               L  VP VG I+A
Sbjct: 509 LPKFLYSLGIREVGEVTAKNIAHHFLTLDGIIKASQ----------EELESVPDVGPIVA 558

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQE 668
             I  F+ N  N+  +E L           +K+     ++ K  V TGTL+ I R +A+ 
Sbjct: 559 HHIRAFFDNVENLEQIEELKDLGVNWPDIKKKSDDELPLKGKTYVITGTLEGISRPEAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +  LGA VS  +S KT  +I G + GSKL+KAQ+LGV+++++  FL 
Sbjct: 619 KLEALGAKVSGSVSSKTTALIAGASAGSKLKKAQELGVEVLDQS-FLD 665


>gi|145630192|ref|ZP_01785974.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
 gi|144984473|gb|EDJ91896.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
          Length = 670

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 243/709 (34%), Positives = 394/709 (55%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RGDG +GED++A IR I  +P  L + N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   ++       +G+G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y+ LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L        T +  +   G  S  N  +S+   ++ +L
Sbjct: 460 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGAKSAENALNSLENAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +                 +   L +VP VG+++A 
Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDTLKDA----------NLEELQQVPDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+++         ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIEQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668


>gi|114327083|ref|YP_744240.1| NAD-dependent DNA ligase [Granulibacter bethesdensis CGDNIH1]
 gi|122327935|sp|Q0BV35|DNLJ_GRABC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|114315257|gb|ABI61317.1| NAD-dependent DNA ligase [Granulibacter bethesdensis CGDNIH1]
          Length = 700

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 277/716 (38%), Positives = 421/716 (58%), Gaps = 34/716 (4%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           L P EALS  +AR EL  L   I+  DD YY+   P++ D++YDAL++R   I   FPD 
Sbjct: 11  LTPPEALSPAEARAELERLASRIAELDDAYYRDDAPLVTDADYDALRQRNAEIERLFPDA 70

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
                 N P N++G   + +  K+ H +P LSL+ +++ E+  +F  R  RF        
Sbjct: 71  ILK---NSPANRVGTAPSSAFAKIRHRVPMLSLDNVFDTEEFAEFCARARRFLNLPASP- 126

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
             F  EPKIDG  I++ YE G    AA RGDG  GEDV+A +R +  +P+ L    P  I
Sbjct: 127 -RFVAEPKIDGLSISLTYENGILTRAATRGDGMEGEDVTANVRTLRDVPQTLHGEAPAFI 185

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           E+RGEV++SK  FL LN+    +G+K +ANPRNAA+G LR+L+ +    R L  F +  G
Sbjct: 186 EIRGEVFMSKAAFLELNETQARLGQKIFANPRNAAAGSLRQLDASVTANRPLALFAYAQG 245

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           ++S   A+  ++ L +++  GF VN   +     +   ++   + + RSTLPYDIDG+V+
Sbjct: 246 ESSAPVAETHWDYLTRLKDWGFVVNPLSQLIEDENAAAAFTTRIAAGRSTLPYDIDGVVF 305

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+D+ SLQ++LG   R+PRW  + KF  +QA+T L  IDIQ+GRTG LTPVA L+ VN+G
Sbjct: 306 KIDDLSLQRRLGFVGRAPRWATAWKFPAEQATTVLEKIDIQVGRTGALTPVAHLQAVNVG 365

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G L+T ATLHNED I             +D+R GD V+++RAG+VIP++V +++ +R   
Sbjct: 366 GVLVTRATLHNEDEIAR-----------KDVREGDTVILQRAGDVIPQIVSVVLEKRPDG 414

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+PF+    CP+C S  +R             RCTGGL C AQ +ERL H VSR AF+I+
Sbjct: 415 ARPFAPLEHCPVCGSLAIRPPGE------VVRRCTGGLTCEAQVVERLIHMVSRPAFDID 468

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++ +  F +       +  PADIF L  R+     +I    G+G +S  NL  +I  
Sbjct: 469 GLGEKSILEFHRD----GLVSGPADIFRLPARED----EIARRDGWGSLSARNLSQAIEA 520

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           RR+I  +RF+++LGIR +G   AR LA++Y S+  +  ++       +D+ L+L  +  +
Sbjct: 521 RRSIPFDRFLYALGIRRIGETNARLLARHYGSFTEWRTQMLAARQIGSDERLALGSITGI 580

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKI 661
           G  IA+ +V+F+  PRNI  ++ L   ++ +          + S +  K +VFTGTLQ +
Sbjct: 581 GPTIAEELVDFFAEPRNIDTLDELAGMLTITAPSGGLSSAALDSPLNGKIIVFTGTLQAM 640

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            R +A+     +GA V+  +S+KTD ++ G + GSK +KA +LG++ ++EE++L L
Sbjct: 641 TRPEAKARAESMGAKVTDSVSKKTDFVVTGADAGSKAKKAAELGIRTLSEEEWLAL 696


>gi|323705997|ref|ZP_08117567.1| DNA ligase, NAD-dependent [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534611|gb|EGB24392.1| DNA ligase, NAD-dependent [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 659

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 230/705 (32%), Positives = 365/705 (51%), Gaps = 49/705 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
               +  L  ++++H   YY   KP I D EYD + R    +   +P       P+ P  
Sbjct: 3   IEDRIKELRDKLNHHSYMYYVLDKPEISDYEYDMMMRELIELEEKYPQFK---TPDSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GGE        TH +P  SL   ++  +LR F  R+           + + +E KIDG
Sbjct: 60  RVGGEPLKEFEPFTHVVPMQSLANAFSEGELRDFDRRVR-----ASVGDVEYVVEFKIDG 114

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE G F   + RGDG  GE+V+  ++ I +IP  L  ++   + VRGEV++ K 
Sbjct: 115 LSVELIYENGFFTVGSTRGDGIIGENVTNNLKTIKSIPLRLKDDLN--LIVRGEVFMPKA 172

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN+E    G   +ANPRNAA+G LR+LNP     R L+ FV  L +   I  K   
Sbjct: 173 SFEKLNEERELNGESLFANPRNAAAGSLRQLNPKITAKRDLDIFVFNLQRIDGIELKTHA 232

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+ ++  GF V+  ++       ++   N ++ IR +L Y+ DG V KV++   ++ L
Sbjct: 233 EALEFLKYQGFKVSPHIKVCGNIDEVIEDINYIRDIRDSLSYETDGAVVKVNDLEKREIL 292

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+ PRW I+ K+  ++  T++ DI +Q+GRTG LTP A LEPV I G++++ ATLHN
Sbjct: 293 GSTAKDPRWAIAFKYPTERQKTKVKDIVVQVGRTGALTPTAILEPVKIAGSIVSRATLHN 352

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           EDYIK            +DIR+GD V++++AGE+IP+VV ++  ER    + F  P  CP
Sbjct: 353 EDYIK-----------EKDIRIGDTVIIQKAGEIIPEVVSVVAEERDGSEKFFIMPEVCP 401

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C +  VR       K         GL C A+    + HF S+DA +I+GLG   +    
Sbjct: 402 ECGAATVRLPGESVTK-------CTGLNCPAKLKRGIIHFASKDAMDIDGLGPAVIGQLL 454

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
            +      I   +D++ L+            +   GD S  NL ++I + +   L+R IF
Sbjct: 455 DN----HLIHNISDLYYLKYDDLVK------LDRMGDKSAKNLINAIEESKGRDLDRLIF 504

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGI  +G++ A  LA ++ + ++  +            +  L  +  +G  +A ++V F
Sbjct: 505 GLGIDLIGSKAAGILASHFKTMESLEKAT----------FEELTEIEEIGPKMADSVVAF 554

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           ++  +N+  ++ L         +   NV+   +    V TGTL+K  R +A+  + + G 
Sbjct: 555 FKEKQNLDIIDRLKAAGVNMRKKDAINVNDNFKGLTFVLTGTLEKYTRDEAKRLIEERGG 614

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            V+  +S+KTD ++VG +PGSKL KAQ+LGVKI+NEEQF  +L+Q
Sbjct: 615 KVTGSVSKKTDYVVVGADPGSKLSKAQELGVKILNEEQFENMLKQ 659


>gi|315498681|ref|YP_004087485.1| DNA ligase, nad-dependent [Asticcacaulis excentricus CB 48]
 gi|315416693|gb|ADU13334.1| DNA ligase, NAD-dependent [Asticcacaulis excentricus CB 48]
          Length = 697

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 282/708 (39%), Positives = 404/708 (57%), Gaps = 22/708 (3%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            + A+   + L  EI +H D YY    P + D+EYDAL++   A+   +PDL      + 
Sbjct: 6   PDTAQTRHAQLSTEIKHHRDLYYNQEAPELTDAEYDALEQELRALEAQYPDL---HTVDS 62

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E++     V H +P LSL+  +  ED+  F   I RF +   +  + F +EPK
Sbjct: 63  PTEQVGAEISSKFAPVQHGVPMLSLDNAFAPEDVADFEKSIRRFLRLPPEEELAFAVEPK 122

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           IDG   ++ Y  GK V AA RGDG +GED++  +R I  +P VLS    PE IE+RGEVY
Sbjct: 123 IDGLSCSLLYVNGKLVRAATRGDGRTGEDITENVRTIKDVPHVLSGRDHPERIEIRGEVY 182

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFA 251
               DF A+N +    G K +ANPRNAASG LR+L+     +R L FF +  G+ S+   
Sbjct: 183 YPLADFAAMNAKSAEEGGKVFANPRNAASGALRQLDATITASRPLRFFAYTWGEVSDPRF 242

Query: 252 -KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E L K    GF VN          G++  Y  ++  RS+L YDIDG+VYKVD   
Sbjct: 243 VTTQTEALAKFHEWGFQVNPRSATTENSDGLLKIYEAIQRDRSSLGYDIDGVVYKVDRLD 302

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  +RSPRW I+HKF  +QA T L  IDIQ+GR G LTPVARLEPVN+GG +++N
Sbjct: 303 YQRRLGFVSRSPRWAIAHKFPAEQALTHLKAIDIQVGRIGTLTPVARLEPVNVGGVVVSN 362

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            TLHN D I             +DIR+GD V V+RAG+VIP++V + ++ER    +P+ F
Sbjct: 363 VTLHNADEIAR-----------KDIRIGDLVRVQRAGDVIPQIVGVELSERQEGTEPYVF 411

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP      V       G+   A RC+G  AC  Q++E LK+ VSR   +IEGLG++Q
Sbjct: 412 PTVCPCPLKTAVARELNLKGEEGVARRCSGEHACPHQRVEYLKYVVSRKVLDIEGLGEKQ 471

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L  F +       IR PADIFTL+ R +TS T + N  G G+ S  NL+ +I  RR + L
Sbjct: 472 LQKFSEE----GLIREPADIFTLEARDKTSLTPLRNREGMGETSARNLFKAIEDRRQLPL 527

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +RFI +LG++ VG   AR LA+ Y S   F   +  + A + +   +L  +  VG  +  
Sbjct: 528 DRFIAALGVKGVGETTARLLARAYHSESTFRDAMIALAAGDEEVKAALDNMDQVGPSLVA 587

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           A++EF+ N  N+      + ++S           S +  K +VFTGTL+K+ R +A+   
Sbjct: 588 ALIEFFSNDHNVGIYMRFVAQLSVQDAE-AVAGDSAVSGKTVVFTGTLEKMTRDEAKAQA 646

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +LGA V+  +S KT I++ G   GSKL+KA +LGV++M E+++L  +
Sbjct: 647 ERLGAKVAGSVSAKTHIVVAGPGAGSKLKKAAELGVQVMTEDEWLAFI 694


>gi|5733399|gb|AAD49562.1|AF126866_1 NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis]
          Length = 672

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 246/714 (34%), Positives = 384/714 (53%), Gaps = 46/714 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S     ++++ L   +  H+  YY    P I DSEYD L R   A+    P+   +   
Sbjct: 1   MS-SSISEQVNHLRIILEQHNYNYYVLDTPSIPDSEYDRLLRELSALETEHPEFLTA--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG       +V H +P LSL+  ++ E+   F  RI       D   + F  E
Sbjct: 57  DSPTQKVGGAALSKFEQVAHQVPMLSLDNAFSEEEFTAFNRRIKERLMSTD--ELTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK+DG  ++I Y  G  V AA RGDG +GE+++  ++ I  +P  L  + P+ +EVRGEV
Sbjct: 115 PKLDGLAVSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKELEVRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEI 249
           ++    F  LN E    G K + NPRNAA+G LR+L+      R L F+ +  G      
Sbjct: 175 FMDSAGFDKLNTEAEKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGN 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +  Y+ L+K+   G P+    +        ++YY ++ + RS L Y+IDG+V K+++ 
Sbjct: 235 IPEDHYQQLEKLTDWGLPLCPETKLVEGPKAALAYYRDILTRRSELKYEIDGVVIKINQK 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  AR+PRW I++KF  ++  T+LLD+D Q+GRTG +TPVARL+PV +GG  ++
Sbjct: 295 TLQERLGFVARAPRWAIAYKFPAQEEITQLLDVDFQVGRTGAITPVARLKPVFVGGVTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D +  L            ++VGD V+++RAG+VIP++  +++  R  DA+   
Sbjct: 355 NATLHNSDEVARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIE 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CPIC S V +          A  RCTGGL C AQ+ + +KHF SR A +I+GLG +
Sbjct: 404 FPTTCPICDSHVEKVEGE------AVARCTGGLVCPAQRKQAIKHFASRKALDIDGLGDK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D     E     I+ PAD+F L++         E++   G  S  NL  ++ + +  +
Sbjct: 458 IVDQLVDRE----LIKTPADLFILKQ------GHFESLERMGPKSAKNLVTALEEAKGTT 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L +F++SLGIR  G   A++LA ++L+ +N                 SL +V  VG+I+A
Sbjct: 508 LAKFLYSLGIREAGEATAQNLANHFLTLENVINA----------SIDSLTQVSDVGEIVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
             +  F+    N+  V AL+ +                +     V TGTL  + R+ A+ 
Sbjct: 558 AHVRGFFDEEHNLAVVNALIDQGVNWPALSAPSEEEQPLAGLTYVLTGTLNTLNRNDAKA 617

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            + QLGA VS  +S KTD ++ G+  GSKL KAQ LG+ I+ E++ + LL ++N
Sbjct: 618 RLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDILTEDELIELLIKHN 671


>gi|146277206|ref|YP_001167365.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17025]
 gi|166216230|sp|A4WRP6|DNLJ_RHOS5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145555447|gb|ABP70060.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17025]
          Length = 704

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 297/687 (43%), Positives = 424/687 (61%), Gaps = 17/687 (2%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           Y+ +  P I D++YDALKRR  AI   FP L RS   + P  ++GG +     KV H + 
Sbjct: 33  YHTHDAPRISDADYDALKRRNRAIEERFPALRRS---DSPSERVGGALAEGFAKVRHEVR 89

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSLE  + + ++ ++I RI RF     D  + FT EPKIDG  +++RYEKG+ V AA R
Sbjct: 90  MLSLENAFELAEVEEWIERIRRFLGHVGD--LRFTAEPKIDGLSLSLRYEKGRLVQAATR 147

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG +GE+V+   R I  +P  L+   P+++EVRGEVY+   DF ALN+   A G++ +A
Sbjct: 148 GDGETGENVTENARTIGDLPTELTGA-PDLLEVRGEVYMRHADFAALNERQEATGQRLFA 206

Query: 215 NPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G LR+L+P    +R L+FF +  G  SE  A  Q   + ++  LGF  N   R
Sbjct: 207 NPRNAAAGSLRQLDPAVTASRPLHFFAYAWGAHSEPLADTQQGAIARLSALGFATNPLTR 266

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
                  ++++Y +++  R++L YDIDG+VYKVD+ +LQ++LG RA +PRW I+HKFA +
Sbjct: 267 LCTGPDELLAHYADIERQRASLGYDIDGVVYKVDDLALQRRLGFRASTPRWAIAHKFAAE 326

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
            A T+L  IDIQ+GRTG L+PVARL+PV +GG ++ NATLHNEDYI G D+ G+ +RGG+
Sbjct: 327 LAWTQLEGIDIQVGRTGALSPVARLKPVTVGGVVVANATLHNEDYIAGRDSKGQEIRGGK 386

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIRVGD V V RAG+VIPKV ++ ++ R   A+P+ FP  CP C S  +R+         
Sbjct: 387 DIRVGDWVQVYRAGDVIPKVAEVDLSRRPEGAEPYRFPDTCPDCGSAAIREPG------D 440

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
           +  RCTGGL C AQQ+ERLKHFVSR AF+IEGLG +Q++  ++       IR PADIF L
Sbjct: 441 SVRRCTGGLICPAQQVERLKHFVSRAAFDIEGLGARQVEALWRD----GWIRQPADIFEL 496

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
             R +    ++EN  G+G  S  NL  +I  RR I+L R IF+LGIRHVG   A  LA +
Sbjct: 497 PNRYRDGLQRLENREGWGRKSAENLLAAIEARRRIALHRLIFALGIRHVGETTATLLATH 556

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           Y S+  F   +         +W  L+ +  VG ++A ++V  +       A++AL   ++
Sbjct: 557 YGSWAAFEAAMTRAEVGTGSEWQDLLSIDGVGAVLATSLVTTFHQEAERAAIDALAAHLT 616

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                    V S I  K +VFTGTL+K+ R++A+     LGA VS  +S +TD+++ G  
Sbjct: 617 VEDAEMRAPVESPIAGKIVVFTGTLEKMSRNEAKARAEALGAKVSGSVSARTDLVVAGPG 676

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            GSK ++A  LGV+ + E+ +L L+  
Sbjct: 677 AGSKAKQAAALGVETIGEDAWLRLIGD 703


>gi|253996456|ref|YP_003048520.1| DNA ligase, NAD-dependent [Methylotenera mobilis JLW8]
 gi|253983135|gb|ACT47993.1| DNA ligase, NAD-dependent [Methylotenera mobilis JLW8]
          Length = 677

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 253/720 (35%), Positives = 386/720 (53%), Gaps = 47/720 (6%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L +  A   +  L   I+ +D  YY    P + DSEYD + R    +  A+P L  +
Sbjct: 1   MPDLKLSSAELRVLELRGLIARYDYEYYVLDAPSVPDSEYDKIYRELQTLEQAYPSLVVA 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P  ++ G    +   +TH    LSL   +   +L  F  RI           + +
Sbjct: 61  ---DSPTQRVSGTATNAFGSITHRQAMLSLNNAFEQSELEAFDKRIREALGVA---QVEY 114

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEV 187
            +EPK DG  IT+ YE G F+  A RGDG++GEDV+  +R +  IP      N P+++EV
Sbjct: 115 AVEPKFDGLAITLTYEHGVFIQGATRGDGYTGEDVTHNLRTLRAIPMRLNCENPPQLLEV 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEV + K DF  LN   +A G K +ANPRNAA+G LR+L+     TR L FF +GLG  
Sbjct: 175 RGEVLMLKRDFDKLNQAQLAKGEKLFANPRNAAAGSLRQLDAKVTATRPLTFFAYGLGVA 234

Query: 247 SEIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             + A       +  +  L FPV++         G+  YY ++   R  LP+DIDG+VYK
Sbjct: 235 EGVPALTSHGAAMDYLASLHFPVSSARAVVRGVQGLSDYYEKIGQQRQQLPFDIDGVVYK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++F+ Q +LG  +R+PRW ++HKF  ++A T + DI +Q+GRTG +TPVARL+PV +GG
Sbjct: 295 VNQFNQQNELGFVSRAPRWAVAHKFPAQEALTLVEDITVQVGRTGAITPVARLKPVFVGG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +TNATLHNED I+            +DI +GD V V+RAG+VIP+VV ++V +R   A
Sbjct: 355 VTVTNATLHNEDEIRR-----------KDILIGDTVSVRRAGDVIPEVVSVVVEKRPAHA 403

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F  P+ CP C S +++  +       A  RCTGGL C AQ+ + + H+ SR A +IEG
Sbjct: 404 RRFEMPTVCPECGSHILKQADE------AVARCTGGLFCPAQRKQAITHYASRRAMDIEG 457

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++ +D   +    A  +   AD+++L          + N+    + S  N+ D++N  
Sbjct: 458 LGEKLVDQLVE----ANLVHTLADVYSL------DIHTLSNLERMAEKSAQNILDALNAS 507

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++ +L RFI++LG+R+VG   A+ LAK++ +                     L+ V  VG
Sbjct: 508 KDTTLARFIYALGMRNVGEATAKDLAKHFGNLNALMAA----------SIEDLLEVNDVG 557

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRH 664
            I+A++I  F+    N   + ALL      +    ++  +  +  K  V TGTL  + R 
Sbjct: 558 PIVAESIKNFFSEEHNKSVIAALLNAGIHWVETEGKQQATGNLVGKTFVLTGTLPNLARD 617

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            A+  +   G  VS  +S+KTD ++ G + GSKLEKAQ LGV I++E   L +L +   +
Sbjct: 618 DAKALIEAAGGKVSGSVSKKTDFVVAGADAGSKLEKAQLLGVAIIDEANLLAVLAEGEAS 677


>gi|148828262|ref|YP_001293015.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittGG]
 gi|166215779|sp|A5UIM6|DNLJ_HAEIG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148719504|gb|ABR00632.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittGG]
          Length = 670

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 243/709 (34%), Positives = 392/709 (55%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDTEFNAFVKRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I Y  G    AA RGDG +GED++A IR I  +P  L + N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGVLTQAATRGDGSTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   ++       +G+G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y+ LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L        T +  +   G  S  N  +S+   ++ +L
Sbjct: 460 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGAKSAENALNSLENAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +                 +   L +VP VG+++A 
Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ +         ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668


>gi|309792382|ref|ZP_07686850.1| DNA ligase, NAD-dependent [Oscillochloris trichoides DG6]
 gi|308225603|gb|EFO79363.1| DNA ligase, NAD-dependent [Oscillochloris trichoides DG6]
          Length = 674

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 250/714 (35%), Positives = 370/714 (51%), Gaps = 49/714 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++  +  + +  L   +  H+  YY    P + D+EYDAL R    +    P+L     P
Sbjct: 1   MAESELVQRIERLRALLREHNYRYYVLDDPNVSDAEYDALMRELRHLEATHPELC---SP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G  +     KV H    LSL   ++  DL  +  R+ +      D  + + +E
Sbjct: 58  DSPTQRVGAPVTSQFGKVRHPQAMLSLGNAFDEADLHAWRERVLKLLG--ADTPLAYVVE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-----RVLSLNIPEIIE 186
           PKIDG  I++ Y  G+F   A RGDG  GEDVSA +R +  IP           IP  IE
Sbjct: 116 PKIDGLAISLTYRAGRFELGATRGDGEVGEDVSANLRTVRGIPLLLRTETPDTPIPTSIE 175

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+   DF ALN  + + G K +AN RN+A+G LR+ +P     R L FF + +G 
Sbjct: 176 VRGEVYMRSADFEALNKRLASSGEKIFANARNSAAGSLRQKDPAITANRPLRFFAYQVGP 235

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
              +    Q++ L  +R LGFPVN   R+ + F  ++ Y     + R +L ++ DG+V K
Sbjct: 236 VEGVELTSQWQTLAYLRDLGFPVNRDARRFDDFAAVLDYCRAWMARRDSLEFEADGIVIK 295

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +D+F+ Q++LG   R PRW I+ KF  ++A+TRL  I + +GRTG+LTP A LEPV IGG
Sbjct: 296 IDDFAQQRELGVVGRDPRWAIAFKFPAREATTRLQAITVNVGRTGVLTPGAELEPVVIGG 355

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             + NA+LHN DYI             RDIRVGD V VKRAG+VIP V+  I++ R    
Sbjct: 356 VTVRNASLHNADYI-----------AERDIRVGDYVTVKRAGDVIPYVIGPILSRRDGSE 404

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           QP+SFP+ CP C + + R          AA RC     C AQ + R++H+VSR A +I G
Sbjct: 405 QPWSFPTTCPACGTALERVEGE------AAWRCPNFGICPAQLVRRVEHYVSRGALDIVG 458

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G++Q + F      A  I   AD++ L               GFG   + NL  +I + 
Sbjct: 459 IGEKQAELFV----TAGLIADVADLYALHMHHFQGM------EGFGPKKIANLITAIEES 508

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   L+R +  LGIR VG+  A++LA  Y S                     L ++  +G
Sbjct: 509 KTRPLDRLLVGLGIRFVGSVAAQTLANQYGSLDAIMAATQA----------DLEQIEGIG 558

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++A ++V+F+Q+P N   VE L     + + G   +  S  +  K  V TGTL  + R 
Sbjct: 559 PVLAASVVDFFQHPENRALVEKLRAAGLTLTGGVPRQLQSQNLSGKTFVLTGTLPTLTRE 618

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A E +   G  +S  +S+KT  ++ G + GSKL KA QLGV +++E     L+
Sbjct: 619 QAAEMILAHGGKLSESVSKKTSYVVAGASAGSKLAKATQLGVPVLDEAGLRELV 672


>gi|117618613|ref|YP_855770.1| DNA ligase, NAD-dependent [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|166215386|sp|A0KHL9|DNLJ_AERHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|117560020|gb|ABK36968.1| DNA ligase, NAD-dependent [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 668

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 245/709 (34%), Positives = 386/709 (54%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +         L + +  +   YY    P + D+EYD L R    +    P+L     P  
Sbjct: 1   MSDILSRHRQLCELLIEYGHQYYVLDNPTVPDAEYDRLMRELIVLEAEHPELK---TPAS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG+   +  +V H IP LSL+ +++ E+L+ F  R+    +++   S  F  EPK
Sbjct: 58  PSVRVGGQPLTAFKQVRHEIPMLSLDNVFSGEELQAFEQRMRDRLKREV--SFTFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ Y  G+ V AA RGDG +GE+++  +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYVAGQLVQAATRGDGTTGEEITENVRTIKAIPLSLRGEGWPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFA 251
           + K  F A+N + +A G K + NPRNAA+G LR+L+     +R L F+ +G+G   E   
Sbjct: 176 MPKAGFEAMNAKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLAFYAYGVGVGGEQLG 235

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              +  L +++  G P++  V+      G  ++++++ + R  LPY+IDG+VYKVD   L
Sbjct: 236 GSHFGRLNQLKEWGLPLSPEVKLKEGAAGCQAFHDDILARRGELPYEIDGVVYKVDAIPL 295

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  AR+PRW  +HKF  ++  T L +++ Q+GRTG +TPVA+L+PV +GG  ++NA
Sbjct: 296 QEELGFVARAPRWATAHKFPAQEEMTELENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNA 355

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            + +GD V+V+RAG+VIP++V ++  +R  DA+   FP
Sbjct: 356 TLHNADEIERL-----------GVMIGDTVIVRRAGDVIPQIVAVVEAQRPADARAILFP 404

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S V R          A  RC+GGL C AQ+ E +KHF +R A +++GLG + +
Sbjct: 405 TECPVCGSAVERLEGE------AVTRCSGGLFCEAQRKEAIKHFAARRAMDVDGLGDKIV 458

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +           ++ PAD+F+L   Q         +   G  S  NL  +I+  R+ +L 
Sbjct: 459 EQLVDK----GLVKTPADLFSLNAIQLAG------LERMGQKSALNLVAAIDAARSTTLP 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF+F+LGIR VG   A +LA ++L+                     L+ V  VGDI+A+ 
Sbjct: 509 RFLFALGIREVGEATALNLANHFLTLDALRAA----------SVEQLLEVADVGDIVAKH 558

Query: 612 IVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +  F + P NI  +EALL           ++        K  V TGTL  + R+ A+  +
Sbjct: 559 VYYFLRQPHNIEVLEALLAAGIHWPAIEKKEASEQPFAGKTFVLTGTLTTLSRNDAKAAL 618

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             LGA V+  +S KTD+++ G+  GSKL KAQ+LG+ + +EE+    LQ
Sbjct: 619 QALGAKVAGSVSAKTDVLVAGEAAGSKLVKAQELGITVWSEEELQQALQ 667


>gi|229843861|ref|ZP_04464002.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 6P18H1]
 gi|229812855|gb|EEP48543.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 6P18H1]
          Length = 670

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 394/711 (55%), Gaps = 45/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + ++++L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTKINNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIHHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I Y  G    AA RGDG  GED++A IR I  IP  L + N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYINGVLTQAATRGDGTIGEDITANIRTIRNIPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   ++       +G+G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L        T +  +   G  S  N  +S+ K ++ +L
Sbjct: 460 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGVKSAENALNSLEKAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +     +           D   L +VP VG+++A 
Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDALKEA----------DLDQLQQVPDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ +         ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  + +
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLVKAQELNITVLTEEEFLAQITK 670


>gi|320540519|ref|ZP_08040169.1| DNA ligase, NAD(+)-dependent [Serratia symbiotica str. Tucson]
 gi|320029450|gb|EFW11479.1| DNA ligase, NAD(+)-dependent [Serratia symbiotica str. Tucson]
          Length = 685

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 243/714 (34%), Positives = 396/714 (55%), Gaps = 50/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   ++++ L   + +H+  Y+    P + D+EYD L      +  A P+L  +   + 
Sbjct: 1   MKSITEQINQLRASLRHHEYQYHVLDAPEVPDAEYDRLMCELRELESAHPELITA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G  +  +  +V H +  LSL+ +++ E    F  R+      K  + + F  E K
Sbjct: 58  PTQRVGAALLAAFDQVRHELLMLSLDNVFDEESFLAFYKRVQERL--KISDPLTFCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ YE G+ V AA RGDG +GE++++ +R I  IP  L+  NIP  +EVRGEV+
Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGANIPRRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N E      K +ANPRNAA+G +R+L+P     R L FF +G+G       
Sbjct: 176 MPQAGFEQMNTEARRKNGKIFANPRNAAAGSIRQLDPRITANRPLTFFCYGVGLLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +  +E L + R  G PVN+G R       ++++Y++++  R+ L +DIDG+V K+D+  
Sbjct: 236 PRSHFERLMQFRAWGLPVNDGARCCTGSDEVLAFYHQVEQDRAQLGFDIDGVVVKIDDID 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW  + KF  ++  T + +I+ Q+GRTG +TPVARLEPV + G  ++N
Sbjct: 296 LQEKLGFVARAPRWATAFKFPAQEQITLVREIEFQVGRTGAITPVARLEPVLVAGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD V+V+RAG+VIPKVV ++ + R  D +   F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPKVVGVLEDRRPQDTRAVVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S V R          A  RCTGGL C+AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PQHCPVCGSDVERLEGE------AVARCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   + E     ++ PAD+F L      S   +  +   G  S  NL +++ K R  + 
Sbjct: 459 IEQLVEKE----YVKNPADLFRL------SANMLSGLDRMGPKSAQNLVNALEKSRQTTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA ++ S +               D  +L  VP VG+++AQ
Sbjct: 509 ARFLYALGIREVGEATAANLAAHFGSLEKLYAA----------DIAALKEVPDVGEVVAQ 558

Query: 611 AIVEFYQNPRNICAVEALLK-EVSPSIGRH----EKNVSSEIENKKLVFTGTLQKIQRHK 665
               F     N   +  L+  E+  +         + + S    K +V TG+L ++ R  
Sbjct: 559 HTRHFLDEALNQKVIAELVSVEIGINWPVPVVVATEEIDSPFAGKTVVLTGSLSQLSRDD 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A++ +  LGA +S  +S+KTD++I G+  GSKL KAQ+LG+++++E + L L++
Sbjct: 619 AKDRLKVLGAKISGSVSKKTDLVIAGEAAGSKLVKAQELGIEVIDEAELLRLIE 672


>gi|108803178|ref|YP_643115.1| DNA ligase, NAD-dependent [Rubrobacter xylanophilus DSM 9941]
 gi|122976160|sp|Q1AZ75|DNLJ_RUBXD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|108764421|gb|ABG03303.1| DNA ligase, NAD-dependent [Rubrobacter xylanophilus DSM 9941]
          Length = 685

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 244/720 (33%), Positives = 374/720 (51%), Gaps = 45/720 (6%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
            ++IP  A  + +AR+ +  L ++I YH+  YY    P I D+EYDAL R  + +   FP
Sbjct: 7   PRIIPPVAEKLAEARQRVEELREQIRYHNRKYYVEDAPEISDAEYDALYRELEELESRFP 66

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           +L     P+ P  ++GGE      +V H++P LSL+    +E+LR++  R+ R    +++
Sbjct: 67  ELV---TPDSPTQRVGGEPLEEFEEVRHAVPMLSLQNARRVEELREWDARVRRLLGPEEE 123

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
             + +  E KIDG  +++RYE G+ V  A RG+G  GEDV+  +R I ++P  L  + P 
Sbjct: 124 GRLRYVTELKIDGLAVSLRYENGRLVRGATRGNGFVGEDVTRQLRTIRSVPDRLDDDPPG 183

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
           ++E RGEVYI   DF   N      G +P+ANPRN A+G +R+L+P     R L  +++G
Sbjct: 184 VLEPRGEVYIKLKDFEEFNRRRQERGERPFANPRNLAAGSVRQLDPRVTARRPLTIYLYG 243

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +G+      +   E L  +R  G  VN           ++         R  L + +DG+
Sbjct: 244 VGEG-YENFESHSEALAALRRYGLRVNPHT-VHGDIDSVIEECGRWAKKREALDFQVDGV 301

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVD    Q++LG   ++PRW I++KF      TRL DI + +GRTG LTP A LEPVN
Sbjct: 302 VVKVDSREQQERLGAVQKAPRWAIAYKFEPLAGRTRLRDIVVTVGRTGALTPQAVLEPVN 361

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG  I+ ATLHNEDYIK            + I +GD V+V+RAG+VIP+VV  +  ER 
Sbjct: 362 VGGVTISRATLHNEDYIK-----------EKGILIGDTVIVERAGDVIPQVVRPVPEERD 410

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D + F  P  CP+C  RV R          A  RC      +    E + H+ SR A +
Sbjct: 411 GDEEEFRMPERCPVCGERVSRPEGE------AITRCANVRCPAQAL-EHIIHWASRGAMD 463

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGLG++     F        IR  AD++ L+  Q      +  + G G+ S  NL  +I
Sbjct: 464 IEGLGEKLARKLFD----LGLIRDVADLYELRAEQ------LAPLEGLGEKSAQNLIRAI 513

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + +    +R +F LGIRHVG+  A  +A+ +   +                   L ++ 
Sbjct: 514 ERSKERPFDRVLFGLGIRHVGSATAELIAERFSGEELLR----------GVGVEELTQIE 563

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            VG+I+A+A+VE++    N   V  L++          K     +  ++LV TGTL +  
Sbjct: 564 GVGEIVARAVVEYFSLEENRKLVRRLMEHGLNFGPVRGKPEEGPLSGRRLVITGTLSR-P 622

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R +  + +   G  V++ +SR TD ++ G+NPGSKLE+A++LGV +++EE    LL    
Sbjct: 623 RSEISDLIEGAGGTVTSSVSRNTDYLVAGENPGSKLERARELGVPVLDEEGLRRLLSGEE 682


>gi|242238286|ref|YP_002986467.1| NAD-dependent DNA ligase LigA [Dickeya dadantii Ech703]
 gi|242130343|gb|ACS84645.1| DNA ligase, NAD-dependent [Dickeya dadantii Ech703]
          Length = 684

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 252/728 (34%), Positives = 400/728 (54%), Gaps = 52/728 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +++ +P+   S    +  + +L  ++ YH+  Y+    P I D+EYD L      +  
Sbjct: 1   MSEKKPMPMNDTSAAAVQ--IDALRAQLRYHEYKYHVEDAPEIPDAEYDKLMNALKLLEQ 58

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           A P+   S   + P  ++G         V H +P LSL+ +++ E  + F+ RI      
Sbjct: 59  AHPEWVTS---DSPTQRVGATPLAGFDNVQHEVPMLSLDNVFDAESFQAFVKRIGDRL-- 113

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
           K D ++ F  E K+DG  +++ YE G  V AA RGDG +GE++++ IR I  IP  L  +
Sbjct: 114 KSDEALRFCCELKLDGLAVSLLYEDGVLVRAATRGDGSTGENITSNIRTIGAIPLRLRGD 173

Query: 181 I-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
             P  +EVRGEV++    F ALN+E    G K +ANPRNAA+G LR+L+P     R L F
Sbjct: 174 NIPRRLEVRGEVFMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTF 233

Query: 239 FVHGLG-KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           F +G+G           ++ L + R  G PV++ +R       ++++Y  ++++R TL +
Sbjct: 234 FCYGVGLMEGGSLPDSHWQRLMQFREWGLPVSDRIRLCTGGDEVLAFYQHVEAVRDTLGF 293

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+V KVD+ +LQ++LG  AR+PRW ++ KF  ++  T L D++ Q+GRTG +TPVAR
Sbjct: 294 DIDGVVIKVDDLALQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVAR 353

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV + G +++NATLHN D I  L            I++GDRV V+RAG+VIP++V ++
Sbjct: 354 LEPVAVAGVIVSNATLHNADEIDRL-----------GIQIGDRVAVRRAGDVIPQIVSVV 402

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + +R  DA+P  FP+ CP+C S V R             RCTGGL C+AQ+ E LKHFVS
Sbjct: 403 LPDRPADARPVVFPTQCPVCGSDVERVDGE------VVTRCTGGLFCAAQRKEALKHFVS 456

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A ++EG+G + +D   + E     ++ PA++F L          +  +   G  S  N
Sbjct: 457 RRALDVEGMGDKIIDQLVEKE----YVKTPAELFRL------DIGILTRLERMGPKSAQN 506

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L ++++K ++ +  RF+++LGIR VG   A  LA ++ +                 D  +
Sbjct: 507 LVNALDKAKSTTFARFLYALGIRDVGEATAAGLAAHFGTLDALMTA----------DVDT 556

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALL--KEVSPSIGRHEKNV---SSEIENKKL 652
           L +VP VG ++A  +  F     N   +  L+  +           +     +    K +
Sbjct: 557 LQQVPDVGIVVATHVRHFLDEEHNQQIIRELIGPEVGLRWPDPVVVDAGALDNPFAGKTV 616

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TG+L  + R +A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ LG+ +++E 
Sbjct: 617 VLTGSLSLLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQALGIDVIDEV 676

Query: 713 QFLFLLQQ 720
           + + LL Q
Sbjct: 677 EMMRLLGQ 684


>gi|332766219|gb|EGJ96429.1| DNA ligase, NAD-dependent [Shigella flexneri 2930-71]
          Length = 647

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 238/687 (34%), Positives = 379/687 (55%), Gaps = 48/687 (6%)

Query: 38  YSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLS 97
              P I D+EYD L R    +    P+L     P+ P  ++G     +  ++ H +P LS
Sbjct: 1   MDAPEIPDAEYDRLMRELRELETKHPELI---TPDSPTQRVGAAPLAAFSQIRHEVPMLS 57

Query: 98  LEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157
           L+ +++ E    F  R+      K++  + +  E K+DG  ++I YE G  V AA RGDG
Sbjct: 58  LDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDG 115

Query: 158 HSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANP 216
            +GED+++ +R I  IP  L     P  +EVRGEV++ +  F  +N++    G K +ANP
Sbjct: 116 TTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANP 175

Query: 217 RNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQ 274
           RNAA+G LR+L+P     R L FF +G+G              L + +  G PV++ V  
Sbjct: 176 RNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQFKKWGVPVSDRVTL 235

Query: 275 ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQ 334
             +   ++++Y++++  R TL +DIDG+V KV+    Q+QLG  AR+PRW ++ KF  ++
Sbjct: 236 CESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARAPRWAVAFKFPAQE 295

Query: 335 ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRD 394
             T + D++ Q+GRTG +TPVARLEPV++ G L++NATLHN D I+ L            
Sbjct: 296 QMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERL-----------G 344

Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
           +R+GD+V+++RAG+VIP+VV+++++ER  D +   FP+ CP+C S V R          A
Sbjct: 345 LRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGE------A 398

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ 514
             RCTGGL C AQ+ E LKHFVSR A +++G+G + +D   + E     +  PAD+F L 
Sbjct: 399 VARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKE----YVHTPADLFKLT 454

Query: 515 RRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
                   K+  +   G     N+ +++ K +  +  RF+++LGIR VG   A  LA Y+
Sbjct: 455 A------GKLTGLERMGPKLAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYF 508

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS- 633
            + +                   L +VP VG ++A  +  F+    N   +  LL E   
Sbjct: 509 GTLEALEAA----------SIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVH 558

Query: 634 --PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
               I  + + + S    K +V TG+L ++ R  A+  + +LGA V+  +S+KTD++I G
Sbjct: 559 WPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAG 618

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  GSKL KAQ+LG+++++E + L LL
Sbjct: 619 EAAGSKLAKAQELGIEVIDEAEMLRLL 645


>gi|317401960|gb|EFV82562.1| DNA ligase [Achromobacter xylosoxidans C54]
          Length = 699

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 262/745 (35%), Positives = 388/745 (52%), Gaps = 76/745 (10%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K    P        A +  + L  EI  H+  YY Y  P I D+EYD L R    +  
Sbjct: 1   MSKAGGTP--------AAETAARLRAEIEQHNVRYYVYDDPSISDAEYDRLMRELQDLEA 52

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ- 119
           A P+L     P  P  ++G     +   V H++P LSL   ++ ED+  F  R+    + 
Sbjct: 53  AHPELV---TPESPTQRVGAAPVSAFGSVRHAVPMLSLGNAFDEEDVVAFDRRVTDTLRG 109

Query: 120 ---KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176
                      +  E K+DG  I++RYE G+ V AA RGDG +GEDV++ IR I  IP  
Sbjct: 110 AGLLGPAQQAEYFCELKLDGLAISLRYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQ 169

Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRY 235
           LS   P+++EVRGEV +++ DF  LN        K + NPRNAA+G LR+L+P     R 
Sbjct: 170 LSGPAPKVLEVRGEVLMNRADFEKLNAAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRP 229

Query: 236 LNFFVHGLGKTSEIFAKG---------------------QYEMLQKMRCLGFP-VNNGVR 273
           L FF +G G+   +                            ML  +  LG P       
Sbjct: 230 LRFFAYGWGEVRGLPGTQSGLFDEASAGAADASTLPEKSHGAMLDWLASLGLPVNVKHNH 289

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
           +A    G++++Y ++ ++R  LPYDIDG+VYKVD    QK LG  AR+PR+ ++HKF  +
Sbjct: 290 RATGAEGLMAFYAKVGALRPELPYDIDGVVYKVDSLPAQKLLGFVARAPRFALAHKFPAE 349

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
           +A+T LLDI++Q+GRTG +TPVARL+PV +GG  +TNATLHNED I+            +
Sbjct: 350 EATTTLLDIEVQVGRTGAITPVARLKPVFVGGVTVTNATLHNEDEIRR-----------K 398

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           D+R+GD V+V+RAG+VIP+VV  ++ +R  DA+ F  P  CP+C S + R  +       
Sbjct: 399 DVRIGDTVIVRRAGDVIPEVVGAVLEKRPADAREFVMPKACPVCGSAIERLEDET----- 453

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
              RCTGGL C+AQ+ + L H  SR A +IEGLG++ ++    S      ++  AD+F+L
Sbjct: 454 -IARCTGGLFCAAQRKQTLWHAASRKALDIEGLGEKLVEQLVDS----GRVKSLADLFSL 508

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
           +        ++  +   G  S  NL ++I+K R  +L R +F+LGIRHVG   AR +A++
Sbjct: 509 R------PLELVGLDRMGQKSADNLVEAIDKARAPALGRLLFALGIRHVGETTARDVARH 562

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +               D  +L  VP VG ++A +I  F+    N   +  L  +  
Sbjct: 563 FGSIEAIMDA----------DEDALSSVPDVGPVVAGSIRRFFAEQHNRDVIGQLKAQGV 612

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                      + +  K  V TGTL    R +A   +   G  VS  +S+KT  ++ G++
Sbjct: 613 -HAVAEAVPQDTTLAGKTFVLTGTLPNWTREEASMRIQAAGGKVSGSVSKKTAYLVAGED 671

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLL 718
            GSKL KAQ+LGV +++E+    LL
Sbjct: 672 AGSKLTKAQELGVTVLDEDGLKELL 696


>gi|23098215|ref|NP_691681.1| NAD-dependent DNA ligase LigA [Oceanobacillus iheyensis HTE831]
 gi|81741485|sp|Q8CXK6|DNLJ_OCEIH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|22776440|dbj|BAC12716.1| DNA ligase (polydeoxyribonucleotide synthase[NAD+]) [Oceanobacillus
           iheyensis HTE831]
          Length = 667

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 252/714 (35%), Positives = 397/714 (55%), Gaps = 52/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ EQ  K++ SL + ++ +   YY    P + D+EYD   R    +   FPDL      
Sbjct: 1   MNKEQVSKKIESLIELLNQYGYEYYVLDNPTVPDAEYDQKLRELQQLEQDFPDLVME--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG    S  KVTH++P LSL   +N +DLR F  R         D  I F  E
Sbjct: 58  NSPTQRVGGAPLASFQKVTHNVPMLSLGNAFNEQDLRDFARRASNG----TDQPISFVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE GKFV  A RGDG  GED+++ ++ I +IP  +       +EVRGE 
Sbjct: 114 LKIDGLAISLTYENGKFVRGATRGDGTIGEDITSNLKTIRSIPLSIKE--QGTLEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+    FLALN+       +P+ANPRNAA+G LR+L+P     R L+ F++G+G+     
Sbjct: 172 YMPHKSFLALNELREKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFLYGVGEWENSD 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L +++ LGF  N   ++ NT   ++ Y N     R+ L Y+IDG+V KVD   
Sbjct: 232 LTSHSEHLTRLKELGFKTNKEWKKCNTIDEVIEYVNYWTEHRNDLSYEIDGIVIKVDSLD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++A T L DI++ IGRTG++TP A L+PV + G  +  
Sbjct: 292 QQEELGFTAKSPRWAIAYKFPAEEAMTTLRDIELSIGRTGVVTPTAILDPVRVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD+V++K+AG++IPKVV  +V +R+ D Q F  
Sbjct: 352 ASLHNEDLIR-----------EQDIRIGDKVVIKKAGDIIPKVVRSVVEQRNGDEQEFHM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C + +VR           A RC     C AQ +E L HFVSR+A NI+GLG++ 
Sbjct: 401 PDECPACGNELVRLEEE------VALRCINP-NCPAQLMEGLIHFVSRNAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       ++  AD++ L +       ++  +   G+ SVTNL ++I K +  SL
Sbjct: 454 IIQLFQEN----LVQTMADLYRLDKE------ELLQLERMGEKSVTNLLEAIEKSKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA  + + +N  +            +  ++ +  +GD +A 
Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMEFETMENLQKAT----------YEDVLAIDEIGDKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           +IV+++   +    +  L +       +     E+   S +  K +V TG ++K  R +A
Sbjct: 554 SIVQYFAEEKVTELLSNLRELGVQMEYKGPRKSEQATDSVLSGKTVVLTGKMEKFSRKEA 613

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +E +  LG  V+  +S+KTDI+I G++ GSKL+KA++LG+ + +E+Q   ++ +
Sbjct: 614 KEIIESLGGTVTGSVSKKTDIVIAGEDAGSKLDKAEKLGIDVWSEQQLEDVVGK 667


>gi|284047985|ref|YP_003398324.1| DNA ligase, NAD-dependent [Acidaminococcus fermentans DSM 20731]
 gi|283952206|gb|ADB47009.1| DNA ligase, NAD-dependent [Acidaminococcus fermentans DSM 20731]
          Length = 675

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 248/719 (34%), Positives = 375/719 (52%), Gaps = 51/719 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  ++ E A   +  L   +  +   YY    P+I D+EYDA+ R   A+   +P+L   
Sbjct: 1   MSEMTKEAAAARIDQLRAVMKKNSYLYYVQDNPLITDAEYDAMMRELKALEAEYPELV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ P   +GG       +V H  P LSL   ++ E++ +F  R++       D  + +
Sbjct: 59  -TPDSPSQHVGGYAKPGFTEVRHMTPLLSLANAFSPEEMEEFDRRVHEGL--PQDVKVQY 115

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP----RVLSLNIPEI 184
            +EPKIDG   +I YE G+FV AA RGDG  GE+V+  +R I  IP     +  + IPE+
Sbjct: 116 VVEPKIDGLACSIIYENGRFVRAATRGDGVVGENVTENVRTIANIPKVLKPIPGIEIPEL 175

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           ++VRGEVY+ +  F+ LN+E    G + +AN RNAA+G LR+L+P     R L FF +G+
Sbjct: 176 LDVRGEVYMPRQAFVKLNEERQEAGEQEFANCRNAAAGSLRQLDPRVTARRSLAFFAYGV 235

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G  +          +  ++  GF    G    +T         +    R+ L YD DG+V
Sbjct: 236 GVGAGNLPT-HNASMDMLQQYGFTTTEGRTLVDTIQEANELIKKHGERRAVLGYDTDGVV 294

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV++   Q  LG   + PRW +++KF  +QA T L DI IQ+GRTG+LTP A L PV +
Sbjct: 295 VKVNDVWQQNILGATGKDPRWAMAYKFPPEQAETLLEDIVIQVGRTGVLTPTAVLRPVRL 354

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ I+ ATLHNED+I+            RDIR+GD V++ +A E+IP+V+ ++  +R  
Sbjct: 355 SGSTISRATLHNEDFIR-----------ERDIRIGDHVIINKAAEIIPEVLRVVPEKRTG 403

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           + + F  P  CP C  +V R          AA RCT    C A   E L HF SRDA NI
Sbjct: 404 EEKEFHMPETCPECGWKVERKAGE------AAWRCTNP-HCPALGREGLIHFTSRDAMNI 456

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G G   L         A  ++ P D++ L R Q       E +   G  S  NL  +I 
Sbjct: 457 DGCGPSVLAQLT----AAGLVKDPGDLYLLTREQV------ETLDRMGPKSADNLVSAIA 506

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +N SL++ +F+LGIRHVGA++A +LA+ Y +                 D   L + P 
Sbjct: 507 ASKNQSLDKLLFALGIRHVGAKVAHTLARKYGTMDKLMAA----------DQEDLAQTPD 556

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKI 661
           +G +IA+++V ++ +P N   VE L +            ++ +     K LVFTGTL  +
Sbjct: 557 IGPVIAESVVTWFADPMNQAYVERLKELGLNMEMTSGPAQDENHPFYGKTLVFTGTLPTL 616

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            R  A+    ++GA V+  +S+KTD ++ G +PGSK  KAQ LGV I++E +FL ++ +
Sbjct: 617 DRATAKTMAQEVGAKVTGSVSKKTDYVVAGADPGSKYTKAQSLGVTILDEAEFLRMMGR 675


>gi|148826285|ref|YP_001291038.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittEE]
 gi|166215778|sp|A5UD04|DNLJ_HAEIE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148716445|gb|ABQ98655.1| DNA ligase [Haemophilus influenzae PittEE]
          Length = 670

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 242/709 (34%), Positives = 389/709 (54%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KQLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I Y  G    AA RGDG  GED++A IR I  +P  L + N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGVLTQAATRGDGTIGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   ++       +G+G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYQDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW  ++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWATAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L        T +  +   G  S  N  +S+   ++ +L
Sbjct: 460 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGTKSAENALNSLENAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +                 +   L +VP VG+++A 
Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ +         ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668


>gi|261868202|ref|YP_003256124.1| NAD-dependent DNA ligase LigA [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413534|gb|ACX82905.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 670

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 251/708 (35%), Positives = 394/708 (55%), Gaps = 46/708 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L + + +H+  Y+    P I DSEYD L  +  A+    P+L  +   + P 
Sbjct: 4   SIQQQIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELVTA---DSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G        ++ H IP LSL+  ++ E+   F+ RI           + F  EPK+D
Sbjct: 61  QRVGARPLSEFAQIRHEIPMLSLDNAFSNEEFFSFVKRIQDRLALVP-EPLTFCCEPKLD 119

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           G  ++I Y  G    AA RGDG +GED++  IR I  IP  L + N P  +EVRGEV++ 
Sbjct: 120 GLAVSILYVNGVLSQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMP 179

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF-FVHGLGKTS-EIFAK 252
              F  LN+  +  G K +ANPRNAA+G LR+L+P   ++       + +G         
Sbjct: 180 HAGFERLNERALEHGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYSIGIAEGVELPP 239

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +E LQ ++ +G PVNN ++  +    ++++Y  + + RS+L YDIDG V K+++ +LQ
Sbjct: 240 THFERLQWLKSVGIPVNNEIQLCDGIENVLNFYRTIMAKRSSLGYDIDGAVLKINDIALQ 299

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  +++PRW I++KF  ++  TRLLD++ QIGRTG +TPVA+LEPV++GG  ++NAT
Sbjct: 300 QRLGFISKAPRWAIAYKFPAEEVRTRLLDVEFQIGRTGAVTPVAKLEPVSVGGVTVSNAT 359

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D IK L            I +GD VL++RAG+VIP+V+ ++   +  + +P  FP+
Sbjct: 360 LHNNDEIKRL-----------GISIGDIVLIRRAGDVIPQVIKLVHKAKKGN-KPIVFPT 407

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S ++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+ +G + ++
Sbjct: 408 HCPVCDSLIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDSVGGKLIE 461

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                E     I  PAD+F L        T +  +   G  S  N   S+ K +N +L R
Sbjct: 462 QLVDRE----LIHTPADLFKL------DLTTLTRLERMGPKSAENALASLEKAKNTTLAR 511

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A +LA ++ + +               D   L +VP VG+++A  I
Sbjct: 512 FIFALGIRDVGEATALNLANHFKTLEALQNA----------DLEQLQQVPDVGEVVANRI 561

Query: 613 VEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             F++   N+  VE L+ +         ++   +  + K +V TGTL ++ R+ A+  + 
Sbjct: 562 FVFWREAHNVAVVEDLIAQGVHWETVDVQEVKENPFKGKTVVLTGTLSQMGRNDAKALLQ 621

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           QLGA VS  +S KTD +I G+  GSKL KA +LGV++++EE+FL  + 
Sbjct: 622 QLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFLGWIN 669


>gi|260581847|ref|ZP_05849643.1| DNA ligase, NAD-dependent [Haemophilus influenzae NT127]
 gi|260095040|gb|EEW78932.1| DNA ligase, NAD-dependent [Haemophilus influenzae NT127]
          Length = 679

 Score =  562 bits (1447), Expect = e-158,   Method: Composition-based stats.
 Identities = 245/709 (34%), Positives = 393/709 (55%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 10  MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 67  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RGDG +GED++A IR I  +P  L + N P  +EVRGEV+
Sbjct: 126 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 185

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   ++       +G+G    +  
Sbjct: 186 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 245

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 246 PTTHYACLQWLKSIGIPVNPEIRLCNGADEVLDFYRDIQNKRSSLGYDIDGTVLKINDIA 305

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 306 LQNELGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 365

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 366 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 414

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 415 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 468

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L        T +  +   G  S  N  +S+ K ++ +L
Sbjct: 469 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGVKSAENALNSLEKAKSTTL 518

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +                 D   L +VP VG+++A 
Sbjct: 519 ARFIFALGIREVGEATALNLANHFKTLDALKAA----------DLDQLQQVPDVGEVVAN 568

Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ +         ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 569 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 628

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 629 LQQLGAKVSGSVSNKTDFVIAGDAAGSKLAKAQELNIAVLTEEEFLAQI 677


>gi|15613212|ref|NP_241515.1| NAD-dependent DNA ligase LigA [Bacillus halodurans C-125]
 gi|15213980|sp|Q9KF37|DNLJ_BACHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|10173263|dbj|BAB04368.1| DNA ligase (polydeoxyribonucleotide synthase (NAD+)) [Bacillus
           halodurans C-125]
          Length = 669

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 243/714 (34%), Positives = 383/714 (53%), Gaps = 54/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A +++  L  ++  +   YY   KP++ D+EYD L      +  AFP+L      
Sbjct: 1   MERNDAERKIEKLRNQLEEYGYHYYVLDKPLVSDAEYDGLMNELIELEEAFPELK---SD 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++GG       KV H  P LSL   ++ +DLR F  R+ +       + + ++ E
Sbjct: 58  TSPSVRVGGPPLPHFEKVEHRTPMLSLGNAFSDQDLRDFDRRVRQVVG----DEVTYSCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE G+FV  A RGDG +GED++  +R IP+IP  L   +   +EVRGE 
Sbjct: 114 LKIDGLAISLIYESGRFVRGATRGDGTTGEDITQNLRTIPSIPLRLKEAVS--LEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ K  F ALN+   A G + +ANPRNAA+G LR+L+P     R+L+ F++ +G      
Sbjct: 172 FMPKRSFEALNEAKEAAGEERFANPRNAAAGSLRQLDPKLAAKRHLDAFIYAIGSVEGKE 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +E L  ++ +GF +N       +   ++ Y N     R+ LPY+IDG+V KVD  +
Sbjct: 232 LHSHHEGLNYLKTIGFKINPESAYCESIDEVIDYVNSWLERRADLPYEIDGIVIKVDNVN 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  A+SPRW I++KF  ++  T LLDI + +GRTG++TP A L+PV + G  +  
Sbjct: 292 FQEQLGYTAKSPRWAIAYKFPAEEVITTLLDITLNVGRTGVVTPTAELKPVTVAGTTVKR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV+++   R  + +PFS 
Sbjct: 352 ASLHNEDLIR-----------EKDIRLGDSVVVKKAGDIIPEVVNVLTELRTGEERPFSM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR A NI+GLG++ 
Sbjct: 401 PTHCPECGSELVRLEGE------VALRCINPQ-CPAQIREGLIHFVSRQAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       I   AD++ L +       ++  +   G+ SV NL  SI   +  SL
Sbjct: 454 ITQLFEH----GLIHNVADLYKLNKD------ELLQLERMGEKSVNNLLASIETSKKSSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR VG++ A++LA ++ +     +            +  LI V  +G+ +A 
Sbjct: 504 ERLLFGLGIRFVGSKAAKTLAMHFPTMTELRRA----------SYDELIAVNEIGEKMAA 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR------HEKNVSSEIENKKLVFTGTLQKIQRH 664
           +IV +++ P     ++ L                 E+   S    K +V TG LQ + R 
Sbjct: 554 SIVSYFEKPEVNELIDELASLGVNMTYNGPKPIGEEEIADSPFAGKTVVLTGKLQALTRG 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A+E +  LG  V+  +S+ TD+++ G++ GSKL KA++L ++I +EE  +  +
Sbjct: 614 EAKEKIEALGGKVTGSVSKNTDLLVAGEDAGSKLTKAKELNIEIWDEEALVKAI 667


>gi|15603581|ref|NP_246655.1| NAD-dependent DNA ligase LigA [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|81636517|sp|Q9CKA9|DNLJ_PASMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|12722128|gb|AAK03800.1| Lig [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 673

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 253/709 (35%), Positives = 395/709 (55%), Gaps = 46/709 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +  + E+  L Q + YH+  Y+    P I D+EYD L  R   +   +P       P
Sbjct: 1   MT-DSIKLEIEQLRQTLRYHEYQYHVLDNPQIPDAEYDRLFHRLKTLEQQYPQWF---SP 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G +   +  +V H +P LSL+  ++ E+L  F+ RI           + F  E
Sbjct: 57  DSPTQRVGAKPLSAFAQVQHEMPMLSLDNAFSDEELHAFVKRIQDRLVFSPKL-LEFCCE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  ++I Y  GK   AA RGDG +GED++  IR +  IP  L   N P  +EVRGE
Sbjct: 116 PKLDGLAVSILYVDGKLTQAATRGDGSTGEDITLNIRTVRNIPLQLLMENPPTRLEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF-FVHGLGKTSEI 249
           V++S+  F  LN++ +A G K +ANPRNAA+G LR+L+P   ++       + +G    I
Sbjct: 176 VFMSQAGFEVLNEKALARGEKTFANPRNAAAGSLRQLDPRITSQRPLLLNAYSIGVAEGI 235

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 +E LQ ++ +G PVNN ++       ++++Y  +   RSTL YDIDG V KV++
Sbjct: 236 DLPDTHFERLQWLKSIGIPVNNEIQLCEGTENVLNFYRAIMQKRSTLGYDIDGTVIKVND 295

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG  +++PRW I++KF  ++  T L  ++ Q+GRTG +TPVA+L+PV + G  +
Sbjct: 296 IALQEELGFISKAPRWAIAYKFPAQEELTVLNAVEFQVGRTGAITPVAKLQPVFVAGVTV 355

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L           D+ +GD V+++RAG+VIP+++ ++  +R  +A+  
Sbjct: 356 SNATLHNGDEIARL-----------DVAIGDTVIIRRAGDVIPQIIGVLHEKRPANAEKI 404

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+C S +VR          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G 
Sbjct: 405 VFPTECPVCGSVIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGA 458

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     I  PAD+F L          +  +   G  S  N  DS+ K +  
Sbjct: 459 KLIEQLVDREQ----IHTPADLFKL------DLNTLARLERMGLKSAQNALDSLQKAKKT 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFIF+LGIR VG   A +LA ++ + +   +               L  V  VG+++
Sbjct: 509 TLARFIFALGIREVGEATALNLANHFKTLEALKEAT----------LEQLQEVQDVGEVV 558

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQ 667
           A  I  F++ P N+  VE L+ +         K+V  +  + K +V TGTL ++ R +A+
Sbjct: 559 ANRIFVFWREPHNVAVVEDLIAQGIHWETVEVKDVGDNPFKEKTVVLTGTLTQMGRTEAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
             + QLGA VS  +S KTD+++ GD+ GSKL KA +LGVK+++E  FL 
Sbjct: 619 ALLQQLGAKVSGSVSAKTDLVVAGDSAGSKLTKANELGVKVIDENTFLA 667


>gi|332306125|ref|YP_004433976.1| DNA ligase, NAD-dependent [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173454|gb|AEE22708.1| DNA ligase, NAD-dependent [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 677

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 259/709 (36%), Positives = 396/709 (55%), Gaps = 48/709 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + L+ L   I+ ++  YY    P + D+EYD L R    I  A PDL     P+ P  K
Sbjct: 8   AQRLTQLINTINEYNYQYYVQDNPSVPDAEYDRLMRELLDIEKAHPDL---RSPDSPSQK 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG    +  +V H +P LSL+  ++ +D+  F  RI      K  + I F+ EPK+DG 
Sbjct: 65  VGGAALSAFEQVEHEVPMLSLDNAFDEDDMFAFEKRIKDRL--KITSEISFSCEPKLDGL 122

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196
            ++I YE GK V AA RGDG  GE+++  +R I  +P  L   + P+ +EVRGEV +++ 
Sbjct: 123 AVSILYEDGKLVRAATRGDGRVGENITTNVRTIANVPLSLRGEDFPQRLEVRGEVIMTRA 182

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK--- 252
            F  LN+  I  G+KP+ NPRNAA+G LR+L+P     R L F+ + LG           
Sbjct: 183 GFDILNEAQIKKGKKPFVNPRNAAAGSLRQLDPKITAARPLLFYSYSLGLVENEQQPLGT 242

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
                L+++   G P++  +  A      ++Y++++  +RS L YDIDG+V+KVD+ ++Q
Sbjct: 243 THSARLKQLSDWGLPLSKELEVAQGAKECLTYFHKIGELRSQLSYDIDGVVFKVDDIAMQ 302

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  AR+PRW I+HKFA ++  + LLD++ Q+GRTG +TPVARL P  +GG  ++NAT
Sbjct: 303 QTLGFVARAPRWAIAHKFAAQEEMSTLLDVEFQVGRTGAITPVARLAPTFVGGVTVSNAT 362

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+D I  L            I++GD V+++RAG+VIP++V I+ ++R  DA+   FP 
Sbjct: 363 LHNQDEINRL-----------GIKIGDSVIIRRAGDVIPQIVAIVADKRPDDAKDILFPE 411

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S V +          A  RCTGGL C AQ+ E +KHF SR A +I+GLG + ++
Sbjct: 412 SCPVCSSAVEKLEGE------AVARCTGGLYCKAQRKEAMKHFASRKALDIDGLGDKLIE 465

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                   A  ++ PAD F L          + ++   G+ S  NL +S+ K +  +L +
Sbjct: 466 QLVD----ADMVKSPADFFAL------DIAPLSSMERMGEKSAVNLVNSLGKSKKTTLAK 515

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F++SLGIR VG   A++LA ++L+     Q           D  +L  V  VG I+AQ +
Sbjct: 516 FLYSLGIREVGEATAQNLALHFLTLDAIEQA----------DLDALQAVSDVGIIVAQHV 565

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671
           V F++   N+  + AL +         +  V    +  +  V TGTL  + R++A+  + 
Sbjct: 566 VNFFKEEHNLEVISALQEAGVHWPKIEKIAVDELPLAGQVYVLTGTLNVMDRNQAKAKLQ 625

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LGA VS  +S KTD ++ G+  GSKL KAQ LGVK+MNE++ L +  +
Sbjct: 626 SLGAKVSGSVSAKTDCLVAGEKAGSKLTKAQDLGVKVMNEDEMLAMFAE 674


>gi|146293460|ref|YP_001183884.1| DNA ligase, NAD-dependent [Shewanella putrefaciens CN-32]
 gi|166216243|sp|A4Y802|DNLJ_SHEPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145565150|gb|ABP76085.1| DNA ligase, NAD-dependent [Shewanella putrefaciens CN-32]
          Length = 685

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 248/713 (34%), Positives = 381/713 (53%), Gaps = 51/713 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            +S E A++ + +L Q ++ H+  YY    P I DSEYD L +    +   FP    +  
Sbjct: 13  DMSPENAQQVMQALSQSLNEHNIRYYVDDAPTITDSEYDRLMQCLIKLEAQFPQFIVA-- 70

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG       ++TH  P LSL+  +   D   F  R+           + F  
Sbjct: 71  -DSPTQRVGGLALAKFDQITHLKPMLSLDNAFGEADFSAFHKRVTDKVG-----EVSFCC 124

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189
           EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVRG
Sbjct: 125 EPKLDGLAVSILYRHGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGNDFPEVVEVRG 184

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           E ++ K  F ALN+   A   K + NPRNAA+G LR+L+     +R L F+ + LG    
Sbjct: 185 EAFMPKAAFEALNERARAKDEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEP 244

Query: 249 IFA---KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K  YE LQ+++  G PV+N ++  +    +  YY ++ + RS LP++IDG+V K
Sbjct: 245 DSYSLGKTHYEQLQQLKSWGLPVSNEIKVCDELDQVFDYYKDILTRRSDLPFEIDGVVMK 304

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++ + Q++LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG
Sbjct: 305 VNDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGG 364

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++NATLHN D I+ L            I++GD V+++RAG+VIP++V I+   R   A
Sbjct: 365 VTVSNATLHNADEIERL-----------GIKIGDTVIIRRAGDVIPQIVAIVPERRPETA 413

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
               FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+G
Sbjct: 414 TNIVFPHNCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDIDG 467

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G + ++     E     ++ PAD+F L        + +  +   G  S TNL  +I   
Sbjct: 468 MGDKVVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGMKSATNLAAAIEAA 517

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  +L RF+++LGIR VG   A +LA ++ S                     L  V  VG
Sbjct: 518 KTTTLARFLYALGIREVGEATAANLAAHFASLDALRVAT----------VEQLTAVEDVG 567

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRH 664
            ++AQ +  F+  P N+  ++AL+            +     ++ +  V TGTL ++ R+
Sbjct: 568 VVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSADAQPLKGQTWVLTGTLNQLNRN 627

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+++EE  L L
Sbjct: 628 DAKAQLQTLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIDEEALLAL 680


>gi|126726435|ref|ZP_01742276.1| DNA ligase [Rhodobacterales bacterium HTCC2150]
 gi|126704298|gb|EBA03390.1| DNA ligase [Rhodobacterales bacterium HTCC2150]
          Length = 705

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 298/723 (41%), Positives = 438/723 (60%), Gaps = 20/723 (2%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K  L     +++ +AR EL  L + I+  +  Y+    P I D+EYD L+R    I  
Sbjct: 1   MNKNPL----DMTMAEARSELKRLAKVIAAANSSYHTADAPEISDAEYDRLRRLNSEIEA 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           AFPDL R+   + P + +G E+  +  KV H +  LSL   +   ++  F+ R+  +   
Sbjct: 57  AFPDLKRA---DSPSDNVGAEVAEAFSKVKHDVRMLSLGNAFEDTEVDDFVGRVRSYLGH 113

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                + FT EPKIDG  +++RYE G+ V AA RGDG +GE+V+   R I  IP  L  N
Sbjct: 114 V--GPLAFTAEPKIDGLSLSLRYENGELVQAATRGDGETGENVTHSARTISNIPHHL-DN 170

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239
            P+++EVRGEVY+  +DF ALN+  I  G K +ANPRNAA+G LR+L+     +R L FF
Sbjct: 171 APDLLEVRGEVYMRHDDFAALNERQIEKGEKTFANPRNAAAGSLRQLDANITRSRPLAFF 230

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G  SE  A  Q   + ++R LGF  N+  +   +   ++++Y  ++  RSTL YDI
Sbjct: 231 AYAWGALSEPLATTQLAAVNRLRSLGFQTNDLTKLCASAQELITHYKSIEEQRSTLGYDI 290

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD+  LQ++LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL+
Sbjct: 291 DGVVYKVDDLELQRRLGFRSTTPRWAIAHKFPAELAWTRLRGIDIQVGRTGALSPVARLD 350

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG +++NATLHNEDYI+G    G+ +R G+D RVGD V V RAG+VIPK+ D+ + 
Sbjct: 351 PVTVGGVVVSNATLHNEDYIQGRGNKGEEIRDGKDFRVGDWVQVYRAGDVIPKLADVNLA 410

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           ER  DA P+ FP+ CP CQS  +RD         A  RC+GGL C AQ +E+LKHFVSR 
Sbjct: 411 ERPDDAAPYEFPTICPECQSPAIRDDG------DAVRRCSGGLICPAQAIEKLKHFVSRG 464

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ-QTSTTKIENILGFGDVSVTNL 538
            F+I+GLG +Q++ FF   DP   ++ PADIFTLQ R       +++N  G+GD S   L
Sbjct: 465 CFDIDGLGNKQVEAFF--GDPELPVKEPADIFTLQVRDADNGLKRLKNRDGWGDKSTQKL 522

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           + +I+++RNI L R IFSLGIRHVG   A  LA+++ SY  F   ++     +++ +  L
Sbjct: 523 FAAIDEKRNIPLNRLIFSLGIRHVGEAAANLLARHFSSYDKFIIAMDEATDRDSNAYQDL 582

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
           I +  VG++ A ++V  +       +++ L + ++          +S +  K +VFTGTL
Sbjct: 583 IAIDGVGEVFANSLVTAFSATSERASIDRLTQHLNIQDVVQADTGNSAVAGKIVVFTGTL 642

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +++ R +A+      GA VS  +S+KTDI++ G   GSK  KA  LG+ +++E  +L L+
Sbjct: 643 EQMSRAEAKAQAEAAGAKVSGSVSKKTDILVAGPGAGSKATKAAALGITVIDEAAWLALI 702

Query: 719 QQY 721
            + 
Sbjct: 703 AEE 705


>gi|120598462|ref|YP_963036.1| DNA ligase, NAD-dependent [Shewanella sp. W3-18-1]
 gi|166216244|sp|A1RII7|DNLJ_SHESW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120558555|gb|ABM24482.1| DNA ligase, NAD-dependent [Shewanella sp. W3-18-1]
          Length = 685

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 248/713 (34%), Positives = 380/713 (53%), Gaps = 51/713 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            +S E A++ + +L Q ++ H+  YY    P I DSEYD L +    +   FP    +  
Sbjct: 13  DMSPENAQQVMQALSQSLNEHNIRYYVDDAPTITDSEYDRLMQCLIKLEAQFPQFIVA-- 70

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG       ++TH  P LSL+  +   D   F  R+           + F  
Sbjct: 71  -DSPTQRVGGLALAKFDQITHLKPMLSLDNAFGEADFSAFHKRVTDKVG-----EVSFCC 124

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189
           EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVRG
Sbjct: 125 EPKLDGLAVSILYRHGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGNDFPEVVEVRG 184

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           E ++ K  F ALN+   A   K + NPRNAA+G LR+L+     +R L F+ + LG    
Sbjct: 185 EAFMPKAAFEALNERARAKDEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEP 244

Query: 249 IFA---KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K  YE LQ+++  G PV+N ++       +  YY ++ + RS LP++IDG+V K
Sbjct: 245 DSYSLGKTHYEQLQQLKSWGLPVSNEIKVCEELDQVFDYYKDILTRRSDLPFEIDGVVMK 304

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++ + Q++LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG
Sbjct: 305 VNDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGG 364

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++NATLHN D I+ L            I++GD V+++RAG+VIP++V I+   R   A
Sbjct: 365 VTVSNATLHNADEIERL-----------GIKIGDTVIIRRAGDVIPQIVAIVPERRPETA 413

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
               FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+G
Sbjct: 414 TDIVFPHNCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDIDG 467

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G + ++     E     ++ PAD+F L        + +  +   G  S TNL  +I   
Sbjct: 468 MGDKVVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGMKSATNLAAAIEAA 517

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  +L RF+++LGIR VG   A +LA ++ S                     L  V  VG
Sbjct: 518 KTTTLARFLYALGIREVGEATAANLAAHFASLDALRVAT----------VEQLTAVEDVG 567

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRH 664
            ++AQ +  F+  P N+  ++AL+            +     ++ +  V TGTL ++ R+
Sbjct: 568 VVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSADAQPLKGQTWVLTGTLNQLNRN 627

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+++EE  L L
Sbjct: 628 DAKAQLQTLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIDEEALLAL 680


>gi|91205008|ref|YP_537363.1| NAD-dependent DNA ligase LigA [Rickettsia bellii RML369-C]
 gi|122990942|sp|Q1RK40|DNLJ_RICBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91068552|gb|ABE04274.1| DNA ligase, NAD-dependent [Rickettsia bellii RML369-C]
          Length = 689

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 278/713 (38%), Positives = 430/713 (60%), Gaps = 29/713 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           IE ++ E+A+K L  L  +I+ ++  YY   KP++ D+EYD L      +   FP L   
Sbjct: 4   IEKINEEEAKKLLIELADKIAQYNHAYYIEDKPLVSDAEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  KIG ++     KVTH +P LSL  +++ ED++ F+ RI  F +    + I  
Sbjct: 64  ---NSPSKKIGAKVENKFAKVTHQVPMLSLSNVFDEEDVKDFLDRIKSFLRLDQFSPI-- 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG      Y+ G     A RGDG+ GED++A I+ I   P  ++   PE++EVR
Sbjct: 119 FCEPKIDGLSFAATYKNGILTTGATRGDGYIGEDITANIKTIKDFPHKINNA-PELLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI KNDF +LN E    G+  +ANPRNAA+G LR+L+P+    R L +FV+ +G   
Sbjct: 178 GEIYIEKNDFTSLNQEQEQQGKDKFANPRNAAAGSLRQLDPSVTAKRPLKYFVYAIGSAK 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E  A  Q ++L K + LGF VN   + AN+   I S+Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 EELANSQDQLLAKFKELGFNVNEIGKLANSEEEIFSFYEYLKTNRKNLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG +
Sbjct: 298 DFALQDRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVI 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+RVGD V ++RAG+VIP++  + + +R  DA  
Sbjct: 358 VSRATLHNYQEIAR-----------KDVRVGDYVFLQRAGDVIPQITGVDLAKRSADATT 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FCP C S++               RC  GL C AQ  ER++HFVS++A +IEGLG
Sbjct: 407 FDPPLFCPSCNSKLHY------VPEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F          I  P DIF L+ + + S TK+EN+ G+G  SV NL+++I K +N
Sbjct: 461 RKQVEFLIDK----GLISNPYDIFFLKEKNEASLTKLENMDGWGKKSVENLFNNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G + A+ L + + SY+NF  ++  +  ++ + +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLTREFGSYENFIAQMELLKENDPEIYQKLNNLDGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +   I++F+    NI  ++ L + ++    +  +  SS +  K +VFTG++  + R +A+
Sbjct: 577 MLVDIIDFFDVKENIELIKNLSEVLNIEDYKETREQSS-LTGKIVVFTGSMPTLSRAEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               +LGA V+A +S  TD++I G++ GSKL+KA++LG+KI++E ++L L++ 
Sbjct: 636 ATAEKLGAKVAASVSSNTDLVIAGEDAGSKLKKAKELGIKIIDEAEWLTLVRD 688


>gi|301169841|emb|CBW29445.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae 10810]
          Length = 670

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 243/707 (34%), Positives = 391/707 (55%), Gaps = 45/707 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTQLDNLRKTLRQYEYEYHVLDHPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVNRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RGDG +GED++A IR I  +P  L + N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   ++       +G+G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L        T +  +   G  S  N  +S+   ++ +L
Sbjct: 460 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGAKSAENALNSLENAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +                 +   L +VP VG+++A 
Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDTLKDA----------NLEELQQVPDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ +         ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL 
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLA 666


>gi|88800009|ref|ZP_01115580.1| DNA ligase, NAD-dependent [Reinekea sp. MED297]
 gi|88777287|gb|EAR08491.1| DNA ligase, NAD-dependent [Reinekea sp. MED297]
          Length = 674

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 259/712 (36%), Positives = 388/712 (54%), Gaps = 45/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +      +L Q+I  +D  YY  ++  I D EYD L      I    P       P  
Sbjct: 1   MTELHDRYQALIQQIRRYDHEYYVLNESAIPDVEYDRLMEELKRIESEHPQWV---TPQS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++ G        V H +P LSL+  +N +DL  F+ R+       D + I F  EPK
Sbjct: 58  PTQRVAGAPQAGFETVEHRMPMLSLDNAFNHDDLGAFVKRLKDRLN--DPSPIEFACEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ YE+G  V  A RGDG +GED++A +R I +IP  L  +  PE++EVRGE+Y
Sbjct: 116 LDGIAVSLLYEQGHLVRGATRGDGTTGEDITANVRTIRSIPLSLQGDGWPEVLEVRGEIY 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEIF 250
           + K  F  +NDE    G K + NPRNAASG LR+L+     TR L    + +G       
Sbjct: 176 MPKAGFERMNDEARERGDKVFVNPRNAASGSLRQLDSRLTATRPLEMCCYSVGVFEGGTL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              QY+++QK    G  +N  +       G++ YY++++  R+ LPY+IDG+VYKV+ F 
Sbjct: 236 PDTQYQLMQKFSEWGLKINPEMALVTDVQGLLDYYDQLEQKRNGLPYEIDGIVYKVNSFG 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  +R+PRW I+ KF  ++  T LLD++ Q+GRTG LTPVARLEPV +GG  ++N
Sbjct: 296 LQRRLGFVSRAPRWAIARKFPAQEEVTTLLDVEFQVGRTGALTPVARLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           D+ +GDRV+V+RAG+VIP+VV  +  +R P+A+P + 
Sbjct: 356 ATLHNMDEIERL-----------DVHIGDRVIVRRAGDVIPQVVKSLAEDRSPEARPITA 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S+V R          A  RCTGG+ CSAQ+ E LKHFVSR A +I+G G++ 
Sbjct: 405 PEECPECGSKVDRVAGE------AVMRCTGGMICSAQRREALKHFVSRKAMDIDGFGEKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D           I   +DIF L + + ++      +   GD S  NL  +I+  R  +L
Sbjct: 459 VDALL----AGNKIHAASDIFELTQEEVSA------LERMGDKSAANLIAAIDAARETTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   AR+LA ++ + +                   L+ V  VG  +A 
Sbjct: 509 ARFIFALGIREVGETTARNLAMHFGTIEKLMSATEA----------QLLDVEDVGPKVAA 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            +V ++   +N   ++ L+              +S +  +  V TG + ++ R +A++Y+
Sbjct: 559 HVVNYFSEEQNRIEIQRLIALGVTWDDPIPDQSASVLAGQTWVVTGKISQMSRDEAKDYL 618

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            QLGA V+  +S KT  ++ G   GSKL KA++LGV +M+E +F+  L Q  
Sbjct: 619 LQLGAKVAGSVSAKTTQVVAGPGAGSKLRKAEELGVPVMDEAEFVEWLTQQG 670


>gi|54308062|ref|YP_129082.1| NAD-dependent DNA ligase LigA [Photobacterium profundum SS9]
 gi|81615410|sp|Q6LTU5|DNLJ_PHOPR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|46912488|emb|CAG19280.1| putative NAD-dependent DNA ligase [Photobacterium profundum SS9]
          Length = 676

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 245/716 (34%), Positives = 398/716 (55%), Gaps = 48/716 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
             +S +  +++L +L ++++YH   YY    P I D+EYD + ++  A+    P+L    
Sbjct: 4   SEMSTD-IQQQLDTLREQLAYHGHRYYVEDNPEIPDAEYDRMMQQLLALEAEHPELM--- 59

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG    S  +V H +P LSL+  +N E+L  F  R+           + + 
Sbjct: 60  SVDSPSQRVGGTPLDSFTQVKHELPMLSLDNAFNDEELNAFEKRLLDRLITAGH--VSYC 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            EPK+DG  +++ YE G  V AA RGDG +GE+++  +R I +IP  L     P  +EVR
Sbjct: 118 CEPKLDGLAVSLMYENGVLVQAASRGDGATGENITTNVRTIRSIPLKLQGEGWPVRLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247
           GEV++ K  F  LN   +  G K +ANPRNAA+G LR+L+         +F+ + +G   
Sbjct: 178 GEVFMPKKGFDELNARALKKGDKAFANPRNAAAGSLRQLDSKIAATRPLSFYAYSVGVVE 237

Query: 248 -EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
               A+ QYE L +++  G P+   +RQ  T + +++YY ++   R +L Y+IDG+V KV
Sbjct: 238 GMDLAESQYERLVQLKGWGIPMCPEIRQLKTINDVIAYYQDIGERRQSLAYEIDGVVIKV 297

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEP+ +GG 
Sbjct: 298 DDVETQEQLGFVARAPRWAIAYKFPAQEEMTLLNNVEFQVGRTGAITPVAKLEPIFVGGV 357

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN D +  L            + +GD V+++RAG+VIP++V ++ + R  +AQ
Sbjct: 358 TVSNATLHNADEVARL-----------GVMIGDTVIIRRAGDVIPQIVSVVESRRPDNAQ 406

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
             +FP  CP+C+S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G 
Sbjct: 407 AITFPITCPVCESNVERVEGE------AVARCTGGLFCQAQRKEALKHFVSRKALDVDGC 460

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ ++     E     +  PA +F L      S   +  +   G  S   L DS+   +
Sbjct: 461 GEKVIEQLVDRE----MVTTPAGLFKL------SAGIVTVLDRMGPKSAQKLVDSLANSK 510

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI+SLGIR VG   A +LA ++ + +                   L+ VP VG+
Sbjct: 511 ETTLPRFIYSLGIREVGEATAANLANHFETLEAITAASK----------EQLLVVPDVGE 560

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           ++A  ++ F++   N+  VE L+      P+I + E+ V   ++ K +V TG+L ++ R 
Sbjct: 561 VVANNLLNFFREAHNMDVVEDLIAVGIHWPAIDKPEEGVELPLDGKVVVLTGSLSQLTRS 620

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            A+  +  LGA V+  +S KTD+++ G+  GSKL KAQ+L ++I +E+  +  + +
Sbjct: 621 DAKAALQALGAKVTGSVSSKTDLLVAGEAAGSKLTKAQELDIEIWDEQALVDFMNR 676


>gi|145633173|ref|ZP_01788905.1| DNA ligase [Haemophilus influenzae 3655]
 gi|144986399|gb|EDJ92978.1| DNA ligase [Haemophilus influenzae 3655]
          Length = 670

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 241/709 (33%), Positives = 389/709 (54%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTQLDNLRKTLRQYEYEYHVLDNPTVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I Y  G    AA RGDG +GED++A IR I  +P  L + N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGVLTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   ++       + +G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYSIGIAEGVNL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L        T +  +   G  S  N  +S+   ++ +L
Sbjct: 460 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGAKSAENALNSLENAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +                 +   L +V  VG+++A 
Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVSDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ +         ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668


>gi|157827661|ref|YP_001496725.1| NAD-dependent DNA ligase LigA [Rickettsia bellii OSU 85-389]
 gi|166216232|sp|A8GXT8|DNLJ_RICB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157802965|gb|ABV79688.1| NAD-dependent DNA ligase LigA [Rickettsia bellii OSU 85-389]
          Length = 689

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 278/713 (38%), Positives = 430/713 (60%), Gaps = 29/713 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           IE ++ E+A+K L  L  +I+ ++  YY   KP++ D+EYD L      +   FP L   
Sbjct: 4   IEKINEEEAKKLLIELADKIAQYNHAYYIEDKPLVSDAEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  KIG ++     KVTH +P LSL  +++ ED++ F+ RI  F +    + I  
Sbjct: 64  ---NSPSKKIGAKVENKFAKVTHQVPMLSLSNVFDEEDVKDFLDRIKSFLRLDQFSPI-- 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG      Y+ G     A RGDG+ GED++A I+ I   P  ++   PE++EVR
Sbjct: 119 FCEPKIDGLSFAATYKNGILTTGATRGDGYIGEDITANIKTIKDFPHKINNA-PELLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI KNDF +LN E    G+  +ANPRNAA+G LR+L+P+    R L +FV+ +G   
Sbjct: 178 GEIYIEKNDFTSLNQEQEQQGKDKFANPRNAAAGSLRQLDPSVTAKRPLKYFVYAIGSAK 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E  A  Q ++L K + LGF VN   + AN+   I S+Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 EELANSQDQLLAKFKELGFNVNEIGKLANSEEEIFSFYEYLKTNRKNLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG +
Sbjct: 298 DFALQDRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVI 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+RVGD V ++RAG+VIP++  + + +R  DA  
Sbjct: 358 VSRATLHNYQEIAR-----------KDVRVGDYVFLQRAGDVIPQITGVDLAKRSADATT 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FCP C S++               RC  GL C AQ  ER++HFVS++A +IEGLG
Sbjct: 407 FDPPLFCPSCNSKLHY------VPEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F          I  P DIF L+ + + S TK+EN+ G+G  SV NL+++I K +N
Sbjct: 461 RKQVEFLIDK----GLISNPYDIFFLKEKNEASLTKLENMDGWGKKSVENLFNNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G +  + LA+ + SY+NF  ++  +  ++ + +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNVKLLAREFGSYENFIAQMELLKENDPEIYQKLNNLDGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +   I++F+    NI  ++ L + ++    +  +  SS +  K +VFTG++  + R +A+
Sbjct: 577 MLVDIIDFFDVKENIELIKNLSEVLNIEDYKETREQSS-LTGKIVVFTGSMPTLSRAEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               +LGA V+A +S  TD++I G++ GSKL+KA++LG+KI++E ++L L++ 
Sbjct: 636 ATAEKLGAKVAASVSSNTDLVIAGEDAGSKLKKAKELGIKIIDEAEWLTLVRD 688


>gi|288941063|ref|YP_003443303.1| DNA ligase, NAD-dependent [Allochromatium vinosum DSM 180]
 gi|288896435|gb|ADC62271.1| DNA ligase, NAD-dependent [Allochromatium vinosum DSM 180]
          Length = 696

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 249/728 (34%), Positives = 381/728 (52%), Gaps = 54/728 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++     + + +L  EI YH+  YY    P I D+EYD L      +    P L     P
Sbjct: 1   MTSSAITQRIEALRAEIRYHNHRYYVLDDPEIPDAEYDRLFAELQQLEAEHPALI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G E    L +V H++P +SL+   + E L +F  R+       + + + +T E
Sbjct: 58  DSPTQRVGAEPRPELGEVRHAVPMISLDNAMSDERLVEFHRRLTVAL--PEFDPVLYTAE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PK DG  IT+RYE G  V AA RGDG  GEDV+   R IP +P  L   + PE++EVRGE
Sbjct: 116 PKFDGLAITLRYESGVLVLAATRGDGTRGEDVTHNARTIPNVPLRLLGEDWPEVLEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+ +  F  LN  +   G +P+ANPRNAA+G LR+L+P     R L F  +G G+ +  
Sbjct: 176 VYMPRAGFDRLNARLEERGERPFANPRNAAAGSLRQLDPRVTARRPLRFCAYGWGEIAGE 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             + Q+EMLQ++   G P++  +RQ     G   Y+  +   R+TL YDIDG+V+K+D  
Sbjct: 236 PGESQFEMLQRLAGWGLPISPELRQVAGLDGCRDYFEALGRRRATLDYDIDGVVFKLDRL 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           S Q  LG  A  PRW I+ KF  ++A T +  ++ Q+GRTG +TPVARL PV +GG  ++
Sbjct: 296 SAQTALGATAHHPRWAIARKFPAQEALTEVEAVEFQVGRTGAVTPVARLRPVQVGGVTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN D ++            +D+R+GD V ++RAG+VIP++V ++V  R   A+   
Sbjct: 356 KATLHNLDEVRR-----------KDVRIGDSVYIRRAGDVIPEIVRVLVERRPDGARLVE 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S V+R          A  RC+GGL C AQ+ E ++HF +R A +IEGLG++
Sbjct: 405 LPTQCPVCGSDVIRPEGE------AVARCSGGLWCPAQRKEAIRHFAARRALDIEGLGEK 458

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     E     +R PAD++ L         ++  +   G+ S  NL  ++   +  +
Sbjct: 459 LIEQLVDLE----WVREPADLYRLTAD------RLALLERMGEKSAANLIAALEHSKRTT 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RF+F+LGIR VG   A+ LA++    +                   L+ +  +G ++A
Sbjct: 509 LARFVFALGIREVGETTAQLLAEHVGGIEALMAA----------SVEDLVAIKGIGPVVA 558

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRH------EKNVSSEIENKKLVFTGTLQKIQR 663
             IV F     N  A+  LL                 +  ++ +  K  V TGTL +  R
Sbjct: 559 AHIVGFMAQAHNREAIAHLLAAGIHWPEVERSDSMPAEPSAAPLTGKTFVITGTLSR-PR 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            +    +  LGA V+  +S+KTD ++ G   GSKL KA+ LGV +++E     L+ +   
Sbjct: 618 EEFAARLQGLGAKVTGSVSKKTDYLLAGAEAGSKLAKAEALGVVVIDEAGLESLIARLQA 677

Query: 724 TLRIHDDD 731
              +H DD
Sbjct: 678 ---LHGDD 682


>gi|294140434|ref|YP_003556412.1| DNA ligase, NAD-dependent [Shewanella violacea DSS12]
 gi|293326903|dbj|BAJ01634.1| DNA ligase, NAD-dependent [Shewanella violacea DSS12]
          Length = 683

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 252/725 (34%), Positives = 393/725 (54%), Gaps = 50/725 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M+  ++    + +I+   +E++ L   ++ H+ CYY    P I D+EYD L ++   +  
Sbjct: 1   MQNDKIQDHASFNIQAVAQEIAELTDILNGHNYCYYVDDAPSIPDAEYDRLLKQLKVLET 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           A P+      P+ P  ++GG       +V H  P LSL+ +++ E+   F  RI      
Sbjct: 61  AHPEYCF---PDSPTQRVGGVALAKFDQVVHLKPMLSLDNVFSDEEFEAFYNRI----ND 113

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL- 179
           K D +  F  EPK+DG  ++I Y  G +  A  RGDG +GED++  +R I +IP  L   
Sbjct: 114 KTDTAPTFCCEPKLDGLAVSILYRDGIYERAGTRGDGKTGEDITENVRTILSIPMKLRGE 173

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           N P ++EVRGEV + K  F +LN+   A G K + NPRNAA+G LR+L+     +R L F
Sbjct: 174 NFPPLLEVRGEVIMPKQAFDSLNERARAKGEKEFVNPRNAAAGSLRQLDSKITASRALGF 233

Query: 239 FVHGLGKT---SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           + + LG     +   A   Y+ L +++  GFPV+  V+Q ++   +++YY ++ + RS+L
Sbjct: 234 YAYALGVVEPETWELADHHYDQLMQLKSWGFPVSAEVKQCDSVKDVIAYYTDIMTRRSSL 293

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            Y+IDG+V KVD    Q  LG  A++PRW  + KF  ++  T L  +D Q+GRTG +TPV
Sbjct: 294 AYEIDGVVIKVDNIDQQAMLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPV 353

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           ARL+P+ +GG  ++NATLHN D I  L            +++ D V+V+RAG+VIP++V 
Sbjct: 354 ARLKPIFVGGVTVSNATLHNADEIARL-----------GVKIKDTVIVRRAGDVIPQIVA 402

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           I+ ++R  DA    FP+ CP+C S V R          A  RCTGGL C AQ+ E +KHF
Sbjct: 403 IVADKRPDDASEIEFPTTCPVCDSLVERLEGE------AVARCTGGLFCEAQRKEAIKHF 456

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
            SR A +I+G+G + ++     E     +  PAD+F L      S + +  +   G  S 
Sbjct: 457 ASRKALDIDGMGDKVVEQLIDKE----LVESPADLFKL------SASAMTMLDRMGLKSA 506

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
           TNL  +I   +  +  RF+++LGIR VG   A +LA Y+ S                 + 
Sbjct: 507 TNLVKAIEVAKQTTFSRFLYALGIREVGEATAANLASYFKSLDKLKAA----------NA 556

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVF 654
              I+V  VG I+AQ +  F+    N+  V++L++         E    S  ++ +  V 
Sbjct: 557 EEFIKVDDVGIIVAQHLTHFFAQEHNLAVVDSLIQAGVNWPAIEEVAEESLSLKGQTWVL 616

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL ++ R+ A+  +  LGA V+  +S+ T  ++ G+  GSKL KAQ LG+KI++EE  
Sbjct: 617 TGTLTQLNRNDAKAQLQALGAKVAGSVSKNTSCLVAGEAAGSKLTKAQDLGIKILDEEGL 676

Query: 715 LFLLQ 719
           L +L 
Sbjct: 677 LAVLA 681


>gi|145634259|ref|ZP_01789970.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittAA]
 gi|145268703|gb|EDK08696.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittAA]
          Length = 670

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 242/709 (34%), Positives = 390/709 (55%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTQLDNLRKTLRQYEFEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I Y  G    AA RGDG +GED++A IR I  +P  L + N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGVLTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   ++       + +G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYSIGIAEGVNL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L        T +  +   G  S  N  +S+   ++ +L
Sbjct: 460 IEQLVNRE----LIHTPADLFKL------DLTTLTRLERMGAKSAENALNSLENAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +                 +   L +VP VG+++A 
Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ +         ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668


>gi|294340191|emb|CAZ88563.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Thiomonas sp.
           3As]
          Length = 686

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 249/718 (34%), Positives = 377/718 (52%), Gaps = 52/718 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            Q  +  + L  EI+  D  YY    P+  D++YDAL R    I    P+L     P+ P
Sbjct: 8   AQPAERATQLRAEIARLDHAYYVLDAPLAPDADYDALFRELQQIEADHPEL---RTPDSP 64

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQK-KDDNSIFFTLE 131
             ++GG        V H++P LS++   +   E    F  R+        DD  + +  E
Sbjct: 65  TQRVGGAPLPEFAPVRHAVPMLSIQTETDTTPEGAAAFDQRVRNRLGLSADDPPVNYCAE 124

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I++RYE G+ V AA RGDG +GEDV+  +R I ++P  L  N P ++EVRGEV
Sbjct: 125 LKFDGLAISLRYEHGQLVQAATRGDGETGEDVTQNVRTIRSVPLQLRGNAPAVLEVRGEV 184

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT--SE 248
            + + DF   N      G     NPRN A+G +R+L+P     R L F+ +G G+     
Sbjct: 185 LMKRADFERYNARQRDKGLPTLVNPRNGAAGSIRQLDPAIAAQRPLAFYAYGWGEIAGWA 244

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 + ML  +   G PV            ++ ++  + + R +LP+DIDG+VYKVD 
Sbjct: 245 QQPDTHHAMLDALETFGLPVAPQRVHGPGAQTLIDFHARIAAARDSLPFDIDGVVYKVDS 304

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG R R P W ++HK+  ++ ST+++ IDIQ+GRTG LTPVA+LEPV +GG  +
Sbjct: 305 LALQRELGFRNREPVWAVAHKYPAQERSTKVIGIDIQVGRTGKLTPVAKLEPVFVGGVTV 364

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQP 427
           TNATLHNED ++            +D+RVGD V+V+RAG+VIP+VV ++++ R  D  +P
Sbjct: 365 TNATLHNEDEVRR-----------KDVRVGDTVIVRRAGDVIPEVVSVVLSARPADVGEP 413

Query: 428 FSFPS----FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           F         CP+C S +VR+         A  RCTGGL C+AQ+ + + H+ SR A +I
Sbjct: 414 FDLYQRLGGQCPVCGSAIVREAGE------ADWRCTGGLFCAAQRKQAILHYASRRAMDI 467

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG++ +D        A  +R+  D++ L         K+  +    + S  NL  ++ 
Sbjct: 468 EGLGEKLVDQLVD----AGIVRVLPDLYRL------GLLKLAALDRMAEKSAANLLQALQ 517

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +  +L RF+++LGIRHVG   A+ LA+++                       L+ VP 
Sbjct: 518 ASKTTTLARFLYALGIRHVGEATAKDLARHFGGLDAILDAP----------LEQLLEVPD 567

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           VG ++AQ+I  F+  P N   VE L       S    +++    +  K LV TGTL  + 
Sbjct: 568 VGPVVAQSIRTFFDQPHNREVVEQLRACGVHWSEAAPDRDAPKPLAGKTLVLTGTLPTLS 627

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R +A+  +   G  V   +S+KTD ++ G   GSKL KAQ+LGV +++E + L LL  
Sbjct: 628 REEAKARIEAAGGKVVGSVSKKTDYVVAGAEAGSKLAKAQELGVTVLDEAELLKLLAD 685


>gi|117927902|ref|YP_872453.1| DNA ligase, NAD-dependent [Acidothermus cellulolyticus 11B]
 gi|166215382|sp|A0LSQ7|DNLJ_ACIC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|117648365|gb|ABK52467.1| DNA ligase, NAD-dependent [Acidothermus cellulolyticus 11B]
          Length = 695

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 242/717 (33%), Positives = 367/717 (51%), Gaps = 42/717 (5%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S   A +  + L +EI  H   YY    P I D+EYDAL R  + I +A+P+L     P+
Sbjct: 12  SAADAARRHAELVKEIEEHAYRYYVLDAPTISDAEYDALMRELEEIENAYPEL---RTPD 68

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  K+ G        V H    LSL+ ++   +LR +I R+ +           +  EP
Sbjct: 69  SPTQKVQGAPAAHFAPVEHLERMLSLDNVFTEGELRAWIARVEKEVGTDA----AYLCEP 124

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR--VLSLNIPEIIEVRGE 190
           K+DG  + + YE G  V  A RGDG  GEDV+A I+AI  +P       N+P ++EVRGE
Sbjct: 125 KVDGLAVDLVYEDGVLVRGATRGDGRVGEDVTANIKAIRNVPHRLHRDGNLPALLEVRGE 184

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY    DF  LN  ++A G+ P+ANPRNAA+G LR+ +P    +R L   VHG+G    +
Sbjct: 185 VYFPVADFAELNAGLVAAGKAPFANPRNAAAGSLRQKDPRVTASRPLRLVVHGIGAHQGL 244

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A  Q E    +   G PV+   + A T   I+ Y       R  L ++IDG+V KVD+F
Sbjct: 245 AAARQSEAYVALAAWGLPVSERAKVATTTKEILDYIAYYAEHRHDLEHEIDGVVVKVDQF 304

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  A++PRW +++K+  ++ +T+LLDI + +GRTG +TP A +EPV + G+ +T
Sbjct: 305 ALQRRLGATAKAPRWAVAYKYPPEEVTTKLLDIQVNVGRTGRVTPFAVMEPVRVAGSTVT 364

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D IK            + + +GD V+V++AG+VIP+VV  +V  R    + F 
Sbjct: 365 NATLHNADEIKR-----------KGVLIGDTVVVRKAGDVIPEVVGPVVALRDGSEREFV 413

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FPS CP C + +VR+            RC    +C AQ  ERL H  SR A +IE LG +
Sbjct: 414 FPSHCPACGTPLVRENG------GVDIRCPNARSCPAQLRERLFHIASRGALDIESLGYE 467

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
             +   +S+     +    D+F L   +  +        G    +   L +++   +   
Sbjct: 468 AANALLESK----LLADEGDLFLLTPEKLRTVPFFTKKDGELSANAVKLLENLESAKTRP 523

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L IRHVG   AR+LA+ + S                     L  V  VG +IA
Sbjct: 524 LWRVLVALSIRHVGPTAARALAREFGSIDAIRNA----------SVDELAAVEGVGRVIA 573

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++I +++    +   V              +++ +  +    +V TGTL +  R  A E 
Sbjct: 574 ESIRDWFAVDWHQEIVAKWSAAGVRM-AEEQRSAAKPLAGITVVVTGTLSRWSRDSAIEA 632

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           +   G   +  +S+KTD ++VG+NPGSK +KA+QLG+ I++EE F  LL +     R
Sbjct: 633 IQDAGGRAAGSVSKKTDFVVVGENPGSKYDKARQLGIPILDEEGFATLLTKGPDAAR 689


>gi|319426762|gb|ADV54836.1| DNA ligase, NAD-dependent [Shewanella putrefaciens 200]
          Length = 685

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 248/713 (34%), Positives = 381/713 (53%), Gaps = 51/713 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            +S E A++ + +L Q ++ H+  YY    P I DSEYD L +    +   FP    +  
Sbjct: 13  DMSPENAQQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQCLIKLEAQFPQFIVA-- 70

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG   +   ++TH  P LSL+  +   D   F  R+           + F  
Sbjct: 71  -DSPTQRVGGLALVKFDQITHLKPMLSLDNAFGEADFSAFHKRVTDKVG-----EVSFCC 124

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189
           EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVRG
Sbjct: 125 EPKLDGLAVSILYRHGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGNDFPEVVEVRG 184

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           E ++ K  F ALN+   A   K + NPRNAA+G LR+L+     +R L F+ + LG    
Sbjct: 185 EAFMPKAAFEALNERARAKDEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEP 244

Query: 249 IFA---KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K  YE LQ+++  G PV+N ++       +  YY ++ + RS LP++IDG+V K
Sbjct: 245 DSYSLGKTHYEQLQQLKSWGLPVSNEIKVCEELDQVFDYYKDILTRRSDLPFEIDGVVMK 304

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++ + Q++LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG
Sbjct: 305 VNDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGG 364

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++NATLHN D I+ L            I++GD V+++RAG+VIP++V I+   R   A
Sbjct: 365 VTVSNATLHNADEIERL-----------GIKIGDTVIIRRAGDVIPQIVAIVPERRPETA 413

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
               FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+G
Sbjct: 414 TDIVFPHNCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDIDG 467

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G + ++     E     ++ PAD+F L        + +  +   G  S TNL  +I   
Sbjct: 468 MGDKVVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGMKSATNLAAAIEAA 517

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  +L RF+++LGIR VG   A +LA ++ S                     L  V  VG
Sbjct: 518 KTTTLARFLYALGIREVGEATAANLAAHFASLDALRVAT----------VEQLTAVEDVG 567

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRH 664
            ++AQ +  F+  P N+  ++AL+            +     ++ +  V TGTL ++ R+
Sbjct: 568 VVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSADAQPLKGQTWVLTGTLNQLNRN 627

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+++EE  L L
Sbjct: 628 DAKAQLQTLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIDEEALLAL 680


>gi|229846132|ref|ZP_04466244.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 7P49H1]
 gi|229811136|gb|EEP46853.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 7P49H1]
          Length = 670

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 241/709 (33%), Positives = 389/709 (54%), Gaps = 45/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KQLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I Y  G    AA RGDG  GED++A IR I  +P  L + N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGVLTQAATRGDGTIGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   ++       +G+G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYQDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW  ++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 297 LQNELGFISKAPRWATAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 357 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L        T +  +   G  S  N  +S+   ++ +L
Sbjct: 460 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGTKSAENALNSLENAKSTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +                 +   L +VP VG+++A 
Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVAN 559

Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ +         ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + QLGA VS  +S KTD +I G+  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGNAAGSKLAKAQELNITVLTEEEFLAQI 668


>gi|302878427|ref|YP_003846991.1| DNA ligase, NAD-dependent [Gallionella capsiferriformans ES-2]
 gi|302581216|gb|ADL55227.1| DNA ligase, NAD-dependent [Gallionella capsiferriformans ES-2]
          Length = 674

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 253/715 (35%), Positives = 389/715 (54%), Gaps = 50/715 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +     ++ + +L  EI  H+  YY    P + D+ YD L R    +    P+   S   
Sbjct: 1   MVSAVVQQRIKALRSEIEAHNYQYYVLDAPTVPDAGYDTLFRELQRLEAQHPEFLTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G        +V H  P LSL   ++ +++  F  R+         + + + +E
Sbjct: 58  DSPTQRVGAAPLKYFAEVPHRTPMLSLNNAFSADEVIAFDARVRDALGI---DEVEYAVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI----IEV 187
            K DG  I + Y  G FV  A RGDG +GEDV+  +R + +IP  L     E+    +EV
Sbjct: 115 LKFDGLAINLSYRNGIFVQGATRGDGSTGEDVTENLRTVRSIPLRLKEANGEVLCADVEV 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-K 245
           RGEV +   DF  LN++    G K + NPRNAA+G LR+L+     TR+L+F+ +G+G  
Sbjct: 175 RGEVLMFTRDFDLLNEQQRLNGEKEFVNPRNAAAGSLRQLDSAVTATRHLSFYAYGVGLC 234

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                +      + ++   G PV           G++ YY EM ++R+ LP+ IDG+VYK
Sbjct: 235 DGVNLSGKHDLQMAQLADWGVPVATQRSTVQGVAGLLDYYKEMGALRAALPFAIDGVVYK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++ + Q+ LG  +R+PR+ I+HKF  ++A T LLDID+Q+GRTG LTPVARL PV +GG
Sbjct: 295 VNDIAQQQMLGFVSRAPRFAIAHKFPAEEAMTTLLDIDVQVGRTGALTPVARLTPVFVGG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +TNATLHNED I+            +D+R+GD V+V+RAG+VIP+V  +++  R  DA
Sbjct: 355 VTVTNATLHNEDEIRR-----------KDVRIGDTVIVRRAGDVIPEVARVVLERRPSDA 403

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + FS P  CP+C S VVR+ +       AA RCTGGL C AQ+ + L HF  R A NI+G
Sbjct: 404 RVFSMPQACPVCGSHVVREED------AAAWRCTGGLFCPAQRKQALLHFAGRRAMNIDG 457

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + ++    ++     +  PAD++ L        + + ++   G+ S  NL D+I   
Sbjct: 458 LGDKLVEQLVDAQQ----VSTPADLYKL------GMSGLVSLERMGEKSALNLLDAIEAS 507

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R  +L RF+F+LGIR+VG   AR LA+++ +     Q           D   L +V  VG
Sbjct: 508 RKTTLARFLFALGIRNVGETTARDLAQHFGALDAIMQA----------DAERLQQVRDVG 557

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRH 664
            ++AQ++V+F+    N+  +  L +                I   K  V TGTL  + R 
Sbjct: 558 PVVAQSMVDFFAEAHNLAVIAQLREAGVHWDEHSPAPQEDRIYTGKTFVLTGTLASLSRQ 617

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A+E +  LGA VS  +S+KTD ++ G + GSKLE+A +LGV +++E +FL L++
Sbjct: 618 QAKERLEALGAKVSGSVSKKTDFVVAGSDSGSKLERAMELGVAVLSESEFLLLIE 672


>gi|163856016|ref|YP_001630314.1| DNA ligase [Bordetella petrii DSM 12804]
 gi|254781264|sp|A9II69|DNLJ_BORPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|163259744|emb|CAP42045.1| DNA ligase [Bordetella petrii]
          Length = 697

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 254/730 (34%), Positives = 385/730 (52%), Gaps = 68/730 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           QA + +++L  EI  H+  YY +  P + D+EYDAL R    +    P+L     P  P 
Sbjct: 7   QAAQRVAALRNEIEQHNVRYYVHDDPSVSDAEYDALMRELIQLETDHPELV---TPESPT 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFFTLE 131
            ++G     +   V H++P LSL   ++ ++++ F  R+    +       D    +  E
Sbjct: 64  QRVGAAPLAAFGSVRHAVPMLSLGNAFDPDEVQAFDRRVGDTLRGAGLLRVDQQPEYFCE 123

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  I++RYE G  V AA RGDG +GEDV+A +R I  +P  L    P ++EVRGEV
Sbjct: 124 LKLDGLAISLRYEDGVLVQAATRGDGQTGEDVTANVRTIRAVPLRLKGAAPRVLEVRGEV 183

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS--- 247
            +++ +F  LN    A   K + NPRNAA+G LR+L+P     R L FF +  G+     
Sbjct: 184 LMNRAEFDRLNRSQAARDEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLP 243

Query: 248 ------------------EIFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEM 288
                              +       ML  +  LG P      R+A    G++++Y ++
Sbjct: 244 GRQTALFDEPAPGAREESTLPRDTHGAMLDWLAELGLPVNTRHNRRAVGAEGLLAFYEQV 303

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
              R  LPYDIDG+VYKV+    QK LG  AR+PR+ ++HKF  ++A+TRLLDI++Q+GR
Sbjct: 304 GRERPGLPYDIDGVVYKVNSLPAQKVLGFVARAPRFALAHKFPAEEATTRLLDIEVQVGR 363

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG +TPVARL+PV +GG  +TNATLHNED ++            +D+R+GD V V+RAG+
Sbjct: 364 TGAITPVARLQPVFVGGVTVTNATLHNEDEVRR-----------KDVRIGDTVTVRRAGD 412

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           VIP+VV  +  +R  DA+ F  P  CP+C S + R  +       A  RCTGGL C+AQ+
Sbjct: 413 VIPEVVGPVPGKRPADAREFVMPVSCPVCGSAIERPEDE------AIARCTGGLFCAAQR 466

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
            + L H   R A +I+GLG++ +D    S      ++  AD+++L         ++  + 
Sbjct: 467 KQTLLHAAGRKALDIDGLGEKLIDQLVDS----GRVKSLADLYSLNA------FELAALE 516

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
             G  S  NL  +I++ R  SL R +F+LGIRHVG   AR +A+++ S +          
Sbjct: 517 RMGKKSADNLVAAIDRARTPSLGRLLFALGIRHVGETTARDVARHFGSIETIMDA----- 571

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
                D  +L   P VG ++A +I  F+  P N   ++ LLK              + + 
Sbjct: 572 -----DEEALAGAPDVGPVVAGSIRRFFAEPHNREIID-LLKAQGVHPVPEAGPQGNTLA 625

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K  V TGT+    R +A  ++   G  VS  +S+KT  ++ G+  GSKL KAQ+LGV +
Sbjct: 626 GKTFVLTGTMPNWTRDEATRHILAAGGKVSGSVSKKTAYVVAGEEAGSKLAKAQELGVTV 685

Query: 709 MNEEQFLFLL 718
           ++E+    LL
Sbjct: 686 LDEDGLKALL 695


>gi|289522353|ref|ZP_06439207.1| DNA ligase, NAD-dependent [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504189|gb|EFD25353.1| DNA ligase, NAD-dependent [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 674

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 258/709 (36%), Positives = 393/709 (55%), Gaps = 46/709 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A+K    L +EI  H+  YY    P+I D EYDAL R    +   FP++     P+ P 
Sbjct: 7   EAKKRAEELRKEIEKHNYYYYVLDSPVITDEEYDALYRGLVELERRFPEII---TPDSPT 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG+      KV H IP LS++ ++  E+L+ F++R+YR  ++     + FT E K+D
Sbjct: 64  QRVGGKPKEEFRKVVHEIPMLSMDNVFTQEELQSFVSRVYRILER----EVDFTTELKVD 119

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++ YE G+FV  A RGDG  GEDV+  +R I ++P  L   +P  +EVRGEVY++K
Sbjct: 120 GIAVSLVYEDGRFVLGATRGDGRVGEDVTENLRTIKSLPLRLMEPLPGRLEVRGEVYMTK 179

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF +LN      G   +ANPRNAA+G LR+L+P     R L  FV+ +    E     Q
Sbjct: 180 EDFASLNRSREEDGEPLFANPRNAAAGSLRQLDPNVTAQRRLRIFVYQVVHPEEYGLFSQ 239

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +++L  +R  GFP     R    F  + +Y  E K  R +L Y  DG+V KVD+ +  +Q
Sbjct: 240 FQVLSWLRNKGFPTQGNERLCKNFEELWNYIEEWKEKRHSLAYATDGVVVKVDDLTAYEQ 299

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A++PRW I+ K+  ++  TRLL I++ +GRTG LTPVA LEPV + G ++  A+LH
Sbjct: 300 LGTTAKAPRWQIAFKYPAEEQRTRLLRIEVSVGRTGALTPVAILEPVRLAGTVVQRASLH 359

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED IK L           D+RVGD V V++AGE+IP+VV +  + R    +PF+ P  C
Sbjct: 360 NEDEIKRL-----------DVRVGDYVYVRKAGEIIPEVVRVDYSARTGQERPFAIPENC 408

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C + VVR +     +           +C AQ  E +KHF SRDA +I+GLG++ ++  
Sbjct: 409 PVCGATVVRLVGEVAYR-------CPNKSCPAQIKESIKHFASRDAMDIKGLGEKIIEQL 461

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              +         AD++ L++    S      +   G  S   L ++IN  +N  L R I
Sbjct: 462 VDKKMIGGF----ADLYKLKKEDLIS------LDRMGPKSAEKLINAINSSKNRPLSRLI 511

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR+VG+  A  LA+ + S  N A+           D   L  +P +G  IA +IV 
Sbjct: 512 YALGIRYVGSRTAEILAERFKSMDNLAKA----------DIQDLSDIPGIGPQIASSIVA 561

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+++ +N+  ++ L +          +      E  K+VFTG L+K  R++A+  V  LG
Sbjct: 562 FFRDEKNLATIKDLARCGIKMAEEESERQEGPWEGWKIVFTGELEKATRNEAENIVKYLG 621

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           A+ S+ +SR    +++G NPGSKL KAQ+LGVKI++E+ F  L+ +  +
Sbjct: 622 AIPSSSVSRNVAFVVIGRNPGSKLAKAQELGVKIVDEQTFWKLVDEAKS 670


>gi|85859410|ref|YP_461612.1| NAD-dependent DNA ligase [Syntrophus aciditrophicus SB]
 gi|123738818|sp|Q2LTN8|DNLJ_SYNAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|85722501|gb|ABC77444.1| NAD-dependent DNA ligase [Syntrophus aciditrophicus SB]
          Length = 672

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 260/711 (36%), Positives = 385/711 (54%), Gaps = 49/711 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E ARK +  L+  I YH+  YYQ   P I D+EYD+L +   A+   FP        
Sbjct: 2   MDAESARKNIEDLKARIEYHNRRYYQLDDPEISDAEYDSLLQELIALEKQFPQWL---TE 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IG           H  P LSL   ++ E++ +F  R+ RF    +   + F +E
Sbjct: 59  DSPSRRIGAAPLSKFAPAVHLSPMLSLANAFSEEEILEFDRRLKRFLDSSER--LSFVVE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI----IEV 187
           PKIDG  + + Y  G     A RGDG  GEDV+  IR + TIP  +     E     IE+
Sbjct: 117 PKIDGVAVNLIYSSGVLTTGATRGDGAKGEDVTQNIRTLHTIPLKIQNGSDERLPEQIEI 176

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE+Y+    F  LN+  +A G  P+ANPRNAA+G LR+L+ +    R L  F + +G  
Sbjct: 177 RGEIYMETAAFRKLNERRLAAGEPPFANPRNAAAGSLRQLDASITARRPLKMFCYAVGIV 236

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   +++L  ++  GF VN  +RQ       + +Y E++ +R+ LPY+IDG+V KV
Sbjct: 237 RGRAFTYHHDVLHALKKWGFSVNPFIRQVEGIEKCIEFYRELQDLRNELPYEIDGMVIKV 296

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ SLQ +LG  +RSPRW ++ KFA  QA+T + DI + +GRTG LTPVA + PV +GG 
Sbjct: 297 DDLSLQTRLGAVSRSPRWAVACKFAATQATTVIRDIIVNVGRTGTLTPVALMTPVKVGGV 356

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ ATLHN+D I             +DIR+GD VLV+RAG+VIP+VV +IV+ R     
Sbjct: 357 TVSRATLHNQDEIDK-----------KDIRIGDTVLVQRAGDVIPEVVKVIVSNRSGREI 405

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           PF  P  CP C S VVR          AAHRC G L+C AQ    ++HFVSR   +IEGL
Sbjct: 406 PFKIPDTCPECGSEVVRLAGE------AAHRCIG-LSCPAQLRRHIQHFVSRGGMDIEGL 458

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +      +     I  PAD++ L      S   + N+    + SV+NL  +I   +
Sbjct: 459 GDKLVSQLVNQK----LIHDPADLYYL------SHDALLNLERMAEKSVSNLLSAIELSK 508

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + SL++ IF+LGIRHVG  I++ LA+ + +         N           L+ +  +G 
Sbjct: 509 HPSLDKIIFALGIRHVGEHISKILARRFRTLDALINTTEN----------ELLAIRDIGP 558

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            ++ +I+EF++N  N   +E L K    S        S+ +  K  VFTG L ++ R +A
Sbjct: 559 EVSSSILEFFRNASNRRVIEKLKKAGV-SPLETISPRSAPLTGKTFVFTGALSRMTRDEA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           ++ V  LG   +  +++KTD ++ G+  GSKL+KAQ+ G+ I++EE+FL L
Sbjct: 618 KQIVESLGGQAAGTVTKKTDYVVAGEAAGSKLQKAQKAGIAILSEEEFLRL 668


>gi|332284990|ref|YP_004416901.1| DNA ligase [Pusillimonas sp. T7-7]
 gi|330428943|gb|AEC20277.1| DNA ligase [Pusillimonas sp. T7-7]
          Length = 698

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 255/725 (35%), Positives = 388/725 (53%), Gaps = 63/725 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A +   +L  EI+ H+  YY    P++ D+ YD L      +    P+L     P  P  
Sbjct: 11  AAQRAETLRAEINEHNHRYYVQDAPVVSDAAYDKLMTELIELEQTHPELI---TPESPTQ 67

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFFTLEP 132
           ++G E   S   V H++P  SL   ++ ED+  F  R++           +  + +  E 
Sbjct: 68  RVGAEPLPSFDSVRHAVPMRSLGNAFDAEDIHAFSKRVFDTLHGAGMAGAEEKVQYVAEL 127

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K DG  +++RYE+G+ V AA RGDG +GED+++ IR + ++P  L  + P+++EVRGEV 
Sbjct: 128 KFDGLAVSLRYEEGRLVRAATRGDGQTGEDITSNIRTLRSVPLKLKGDYPQVLEVRGEVL 187

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           +++ DF  LN    A G K + NPRNAA+G LR+L+P     R L F+ +G G+   +  
Sbjct: 188 MNRQDFEKLNQAQQARGEKVFVNPRNAAAGSLRQLDPRITAKRPLRFYAYGWGEIRIVHD 247

Query: 252 KG-----------------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
                                +ML  ++ LG PVN+  +      G++ +Y  + S R+ 
Sbjct: 248 GQTELFRQESGSAEMPRKTHAQMLDWLQALGLPVNDSRKLVCGAQGLLDFYEHIGSTRTA 307

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LP+DIDG+VYKVD    Q+ LG  AR+PR+ I+HKF  ++ +TRLL I++Q+GRTG +TP
Sbjct: 308 LPFDIDGVVYKVDSLEAQEVLGYVARAPRFAIAHKFPAQEETTRLLSIEVQVGRTGAITP 367

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARLEPV +GG  +TNATLHNED I+            +D+RVGD V+V+RAG+VIP+V+
Sbjct: 368 VARLEPVFVGGVTVTNATLHNEDEIRR-----------KDVRVGDTVVVRRAGDVIPEVL 416

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +++ R PD   F  P  CP+C S + R  +       A  RCTGGL C+AQ+ + L H
Sbjct: 417 APVLDLRPPDTSLFVMPRQCPVCGSAIERPEDE------AVSRCTGGLFCAAQRKQSLSH 470

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
              R A +IEGLG++ +D    S      ++  AD+FTL   +  +          G  S
Sbjct: 471 AAGRKALDIEGLGEKLVDQLVDS----GRVKSLADLFTLTSDELAAY------ERMGRKS 520

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             NL  ++ K R  SLER +++LGIRHVG   AR LA+++ S                 D
Sbjct: 521 ADNLVAALEKARTPSLERLLYALGIRHVGEATARDLARHFGSVDAVMAA----------D 570

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLV 653
             +L++V  VG ++A +I+ F+  P N   +  L      +    + + S   +  K LV
Sbjct: 571 ETALLQVHDVGQVVAASILNFFAEPHNRDVIAQLAAAGVHASAPEQASGSDLRLAGKTLV 630

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGT+    R +A   +   G  VS  +S+KT  ++ G+  GSKL KA +LGV +++E+ 
Sbjct: 631 LTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYVVAGEEAGSKLTKAAELGVPVLDEDG 690

Query: 714 FLFLL 718
              LL
Sbjct: 691 LKALL 695


>gi|222055066|ref|YP_002537428.1| DNA ligase, NAD-dependent [Geobacter sp. FRC-32]
 gi|254781339|sp|B9M861|DNLJ_GEOSF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221564355|gb|ACM20327.1| DNA ligase, NAD-dependent [Geobacter sp. FRC-32]
          Length = 669

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 245/710 (34%), Positives = 378/710 (53%), Gaps = 44/710 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A+  +  L +EI+ H+  YY   +P I D+EYD L R    +   FPDL  +   
Sbjct: 1   MDRTAAQLRIQELHREINRHNYLYYVEDRPEITDAEYDLLLRELQQLEKEFPDLVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G        +V+H +P LSLE  +N  ++R F  RI R+        I +  E
Sbjct: 58  DSPTQRVGAAPLDKFNQVSHRLPMLSLENAFNEGEMRDFDERIKRYLGLPMAKEIEYVCE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PK+DG  + + YE+G   + + RGDG+ GEDV+  ++ + +IP R+     P ++EVRGE
Sbjct: 118 PKMDGLAVELIYEEGSLTFGSTRGDGYVGEDVTQNLKTVKSIPLRLHCSPPPSLVEVRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+    F  LN +    G  P+ANPRNAA+G LR+L+P     R L+ F +  G     
Sbjct: 178 VYLGLAPFQKLNMDREEAGLPPFANPRNAAAGSLRQLDPRITARRPLSIFCYAPGLVEGY 237

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q +ML  +   G PVN  +++      +++YY E+   R +LPY+IDG+V KVD F
Sbjct: 238 EFTSQSQMLATLPQWGLPVNPLIKKVAGIDAVLAYYREIGETRESLPYEIDGVVIKVDSF 297

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ+ LGE+ RSPRW I+ KF  +QA T + DI  Q+GRTG++TPVA L+PV + G +++
Sbjct: 298 DLQRDLGEKTRSPRWAIAWKFPPRQAVTVVEDIVPQVGRTGVITPVAHLKPVEVSGVMVS 357

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN + ++            +DIR GD V+V+RAG+VIP VV ++  +R   A+  +
Sbjct: 358 RATLHNWEEMEK-----------KDIRKGDTVVVERAGDVIPAVVKVMTEKRLEGAELLA 406

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S +V+       +         GL C AQ  E + HF SR A +IEG+G +
Sbjct: 407 VPAACPECGSEIVKIPGEVAIR-------CLGLTCPAQIRETIIHFASRHAMDIEGMGDK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   + E     ++  AD++ L ++              GD    NL ++I   ++  
Sbjct: 460 YVEQLLRLE----LVKTVADLYYLTKKDFMRF------ERMGDKLAENLLNAIEASKHRE 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFIF+LGIRHVG   A+ LA  + S ++  +               L+ +  VG  +A
Sbjct: 510 LSRFIFALGIRHVGEHTAKLLASAFGSVEHLEKATE----------EELLSIREVGPQVA 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           Q++  F++NP N   +E +           EK +      K  VFTG L +  R  A+  
Sbjct: 560 QSVRTFFRNPANREVIERMFAAGVR-PAVEEKRLGGRFTGKTFVFTGALTRFTRDDAKNM 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V   G   +  +S+KTD ++ G   GSKL+KA+QLGV ++ E++FL +L+
Sbjct: 619 VENEGGHAAGSVSKKTDYVVAGAEAGSKLDKARQLGVNVLTEDEFLKMLE 668


>gi|300311482|ref|YP_003775574.1| NAD-dependent DNA ligase [Herbaspirillum seropedicae SmR1]
 gi|300074267|gb|ADJ63666.1| NAD-dependent DNA ligase (contains BRCT domain type II) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 688

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 245/706 (34%), Positives = 379/706 (53%), Gaps = 47/706 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
              +L  +++ H+  YY   +P I D+EYD L +   A+  A P+L     P+ P  ++G
Sbjct: 21  RAFALRADLNRHNYSYYVLDQPSIPDAEYDRLFQELQALETAHPELL---TPDSPTQRVG 77

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                    V H IP LSL   ++ +D+  F  R+    +      + +  E K DG  I
Sbjct: 78  AGPLPQFEPVRHDIPMLSLGNGFSDDDIEAFDKRVRDGLETL--QEVRYATELKFDGLAI 135

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDF 198
           ++RYE G  V AA RGDG +GE+V+A IR +  IP  L    IP++++VRGEV + K+DF
Sbjct: 136 SLRYENGVLVQAATRGDGTTGENVTANIRTVRAIPLRLHGEAIPQLLDVRGEVLMYKDDF 195

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IFAKGQYE 256
             LN      G+K +ANPRNAA+G LR+L+      R L FF +G+G             
Sbjct: 196 ARLNQRQRDAGQKEFANPRNAAAGSLRQLDSRITAQRTLRFFAYGIGVLEGADMPSSHSA 255

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L   + LG PV           G++ ++  + + R +LPY+IDG+VYKVD    QKQLG
Sbjct: 256 LLDWYQQLGLPVCKERAVVTGATGLLEFFRGIGAKRESLPYEIDGVVYKVDRLDQQKQLG 315

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PR+ ++HKF  ++A T + DI++Q+GRTG +TPVARL PV +GG  +TNATLHNE
Sbjct: 316 FVSRAPRFALAHKFPAQEALTVVQDIEVQVGRTGAITPVARLNPVFVGGVTVTNATLHNE 375

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D ++            +DI++GD V+V+RAG+VIP+VV  +  +R  DA+ F  P+ CP+
Sbjct: 376 DEVRR-----------KDIQIGDTVIVRRAGDVIPEVVAYVPEKRPADARAFVMPAACPV 424

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           C S +VR  +       A  RC+G  L CSAQ+   L+HF SR A +IEGLG+Q ++   
Sbjct: 425 CGSPIVRAEDE------AVARCSGGWLKCSAQRKGGLQHFASRRAMDIEGLGEQLVEQLV 478

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             +     +  PAD++ L        + +  +    + S  N+ D++ K ++ +L RFI+
Sbjct: 479 DRK----VVNTPADLYRL------GLSALAELDRMAEKSAQNVLDALQKSKSTTLARFIY 528

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIRHVG   A+ LA+++                       L+ V  VG ++A +I  F
Sbjct: 529 ALGIRHVGEATAKELARHFGGLDKILAASEA----------QLLEVADVGPVVATSIRSF 578

Query: 616 YQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           + +  N+  VE L             +  +  +  K  V TGTL  + R +A + +   G
Sbjct: 579 FDDALNVELVEQLRAVGVHWPESAGVEAAAKHLAGKTFVLTGTLPNLSRDEASQLIEAAG 638

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             V+  +S+KT  ++ G   GSKL KA++LG+ I++E+    L  +
Sbjct: 639 GKVTGSVSKKTTYVVAGAEAGSKLAKAEELGIAILDEDGLKALCAE 684


>gi|299535244|ref|ZP_07048568.1| DNA ligase [Lysinibacillus fusiformis ZC1]
 gi|298729365|gb|EFI69916.1| DNA ligase [Lysinibacillus fusiformis ZC1]
          Length = 667

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 238/712 (33%), Positives = 375/712 (52%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +  + ++ L + +  +   YY   KP++ DS YD L +   A+  A P L     P+ 
Sbjct: 1   MNEIEQRIAELNKLLHEYGYAYYVLDKPVVADSVYDQLLQELIALEEANPSLIY---PDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG +     KVTH  P LSL   +N  DLR+F  ++ +       +   +  E K
Sbjct: 58  PTQRVGGAVVEGFKKVTHDYPMLSLSNAFNEADLREFDRKVRQAIG----DQFSYVCELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+++YE G FV  A RGDG  GED++A ++ I  IP  L   I   IEVRGE Y+
Sbjct: 114 IDGLAISLKYENGMFVQGATRGDGVVGEDITANLKTIRAIPLRLKEPI--TIEVRGEAYM 171

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFA 251
            K  F  LN +    G + +ANPRNAA+G LR+L+P      +   F     G       
Sbjct: 172 PKKSFENLNAQRADNGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEVYGI 231

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            G  EML  +  LGFP N   ++ +T   ++++       R  L Y+IDG+V KVD ++ 
Sbjct: 232 DGHAEMLDYLEGLGFPSNKERQRCSTIEEVMAFIEHWTENRPKLAYEIDGIVIKVDRYAQ 291

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  A+SPRW I++KF  ++  T LLDID+ +GRTG++TP A L PV + G  +  A
Sbjct: 292 QDELGYTAKSPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILTPVQVAGTTVQRA 351

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHNED I+            +DIR+GD V++++AG++IP+VV +++ +R  D+ PF  P
Sbjct: 352 SLHNEDLIR-----------DKDIRLGDTVIIRKAGDIIPQVVGVLIEQRPEDSVPFVMP 400

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S ++R           A RC    AC AQ  E +K+FVSR+A NI+GLG + +
Sbjct: 401 KNCPVCDSELIRIEGE------VALRCVNP-ACFAQIAESIKYFVSRNAMNIDGLGDKVV 453

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   +    A  I   +D++ L   Q         +   G+ S TNL ++I   +  S+E
Sbjct: 454 EQLLR----ADLIHDVSDLYHLTVEQLV------ELERMGEKSATNLVNAIQASKENSME 503

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +  LGIRHVG + A+ +++ + S +                   L+ +  +GD +A +
Sbjct: 504 RLLIGLGIRHVGEKAAKIVSEEFGSMEAVMAATE----------EQLVAIYEIGDKMASS 553

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +VE++ N      +E L         +          S    K +V TG L+++ R++A+
Sbjct: 554 LVEYFSNEDARAVIERLADAGVNMTYKGKKVEVAIGDSPFAGKTIVLTGKLEQLTRNEAK 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             + +LG  V+  +S+KTD++I G + GSKL KA+QLG+++  E+  +  L 
Sbjct: 614 AKIEELGGTVTGSVSKKTDLVIAGADAGSKLTKAEQLGIEVWTEDNLIEQLN 665


>gi|222099565|ref|YP_002534133.1| DNA ligase [Thermotoga neapolitana DSM 4359]
 gi|254781438|sp|B9K734|DNLJ_THENN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221571955|gb|ACM22767.1| DNA ligase [Thermotoga neapolitana DSM 4359]
          Length = 693

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 254/707 (35%), Positives = 388/707 (54%), Gaps = 47/707 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            ++  +E+  L +EI YH+  YY  + P+I D EYD L RR   +   +P+L     P+ 
Sbjct: 12  PKEVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDRLMRRLIELERMYPELV---TPDS 68

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG++      V HS+P LSL+  +N E++ +F  R+ +  Q+   + + +  E K
Sbjct: 69  PTQRVGGKVLEGFKTVKHSVPMLSLDNTYNEEEIIEFDKRVKKTLQE---SEVEYVAELK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I +RYE G+FV  A RGDG  GEDVS  ++ I ++P  L L  P  IEVRGE+Y+
Sbjct: 126 IDGVSIALRYENGRFVLGATRGDGVEGEDVSENVKTIRSVP--LRLRKPLTIEVRGEIYM 183

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
             ++F  LN+E    G  P+ANPRNAA+G LR+LN     +R L+ F++ +        K
Sbjct: 184 PVDEFKRLNEEREEEGLPPFANPRNAAAGTLRQLNTALVASRRLDSFIYYVVHPENYGLK 243

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q+E LQ ++ +GF VN   R       ++ Y+ E K  +  L Y +DG+V KV+ F  Q
Sbjct: 244 TQWEALQFLKEIGFKVNPHSRLCKNIQEVIEYWREWKERKRELDYWVDGVVVKVNRFDFQ 303

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K LGE +++PRW I+ KF  +QA TR+LD+ IQ+GRTG+LTPVA LEPV + G ++  A+
Sbjct: 304 KVLGETSKAPRWAIAFKFPAEQARTRILDVTIQVGRTGVLTPVAELEPVQLAGTIVKRAS 363

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN +YI+            +DIR+GD V V++AG +IP++V  I   R    +    P 
Sbjct: 364 LHNFEYIR-----------EKDIRIGDYVFVEKAGGIIPQIVKSIPELRTGSEKEIKPPQ 412

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C  +V      K      A RC     C A+    L+ FVSR+A +IEGLG++ +D
Sbjct: 413 SCPVCGGKVG-----KLSPDEVAIRCLNP-HCPAKLKRALRTFVSREALDIEGLGEKIID 466

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
               S      ++  ADIF L           +   G G  ++  +   I + +   L +
Sbjct: 467 RLVDS----GLVKDIADIFYLTPFDL-----AQLGPGIGQRTIAKILQEIEEAKKRPLHK 517

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            I  LGI  VG + A+ LA+++ S +  A+            + +L  +P +G  IA++I
Sbjct: 518 LITGLGIPMVGQKTAKILAEHFKSLEAIAEA----------SYETLKDIPGIGPEIARSI 567

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           VE+++NP+    +E L K       +  K     ++      TGTL+   R +  E++ +
Sbjct: 568 VEYFRNPKTREIIEKLKKAGVKLEEKTVKY--DVLKGLTFAVTGTLKNFTREEIIEFLER 625

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           LGA V   +S+ TD +IVG+NPGSK EKA+ L VK M+EE+FL  ++
Sbjct: 626 LGARVVNSVSKNTDYLIVGENPGSKYEKAKALKVKTMSEEEFLRFVE 672


>gi|218289368|ref|ZP_03493602.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1]
 gi|218240474|gb|EED07655.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1]
          Length = 684

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 241/722 (33%), Positives = 369/722 (51%), Gaps = 56/722 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
            ALS+E+AR     L ++I YH+  YY    P I D+E+DAL R    +   +P+L    
Sbjct: 8   SALSLEEARARAKVLREQIEYHNRKYYLEDNPEISDAEWDALMRDLIELERKYPELV--- 64

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
           DP  P  ++G        KV H +P LSL   ++ EDL  +  R+ +       + + + 
Sbjct: 65  DPASPTQRVGAPALEGFAKVVHEVPMLSLSNAYSTEDLLDWDRRVRQAVG----DDVRYV 120

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E K+DG  + +RY+ G+ V  A RGDG  GED++A IR I  +P  LS  +   +EVRG
Sbjct: 121 CELKVDGLAVALRYQDGRLVLGATRGDGSVGEDITANIRTIRNVPLELSEPVS--LEVRG 178

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248
           E Y+ K +F+ LN+     G   +ANPRNAA+G LR+L+P    +R L   V+ L +   
Sbjct: 179 EAYMPKREFMRLNELREQQGEPLFANPRNAAAGSLRQLDPAVAASRRLGVIVYQLVRAEA 238

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              +   + L  +  LG P +           +++Y       R  LPY  DG+V KVD 
Sbjct: 239 HGCETHSQALDYVARLGLPAHRERHVCANIEDVIAYIEAWADKRHELPYATDGMVVKVDS 298

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ +LG  A+SPRW I++K+A +QA T L  I++ +GRTG++TP A  +PV + G  +
Sbjct: 299 LALQSRLGATAKSPRWAIAYKYAAEQAETTLRAIELNVGRTGVVTPTAVFDPVQLAGTTV 358

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHNED ++            +DIRVGD ++V++AG++IP+V+  +   R      F
Sbjct: 359 SRASLHNEDLVR-----------EKDIRVGDVIVVQKAGDIIPEVIRSLPERRTEPLPEF 407

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C SR+VR           A RC     C A   E L HF SRDA NIEGLG+
Sbjct: 408 RMPETCPQCGSRLVRLDGE------VAWRCINP-DCPALLREGLIHFCSRDAMNIEGLGE 460

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           Q +            +R  AD++ L++           +   GD     L  +I + +  
Sbjct: 461 QWITVLLDR----GLVRTHADLYRLRKSDLI------QLDRMGDKLADKLLHNIQESKRN 510

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SLER +F LGIRHVG + A++LA+++ +                     L+ VP +G  +
Sbjct: 511 SLERLLFGLGIRHVGEKAAKTLAEHFGTIDALMSASE----------EELMAVPDIGPKV 560

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           AQ+I +++  PR    ++ L            +K     +  K +V TG LQ   R +A 
Sbjct: 561 AQSIRQYFDTPRVRQLIQELKDLGVNMTYLGPQKVSDGPLAGKTVVLTGVLQAADRKQAT 620

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-------GVKIMNEEQFLFLLQQ 720
           E++ ++G  V++ +S KTD++I GD  GSKL KAQ++        ++I +E  FL L+ +
Sbjct: 621 EWIERMGGKVASSVSAKTDVLIAGDKAGSKLAKAQEILRNHPDAKLEIWDEAAFLRLVDE 680

Query: 721 YN 722
             
Sbjct: 681 AG 682


>gi|315127017|ref|YP_004069020.1| NAD-dependent DNA ligase [Pseudoalteromonas sp. SM9913]
 gi|315015531|gb|ADT68869.1| NAD-dependent DNA ligase [Pseudoalteromonas sp. SM9913]
          Length = 673

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 243/715 (33%), Positives = 384/715 (53%), Gaps = 47/715 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++     ++++ L   +  H+  YY    P I D+EYD L R    +    P+   +   
Sbjct: 1   MT-SSISEQINHLRTTLEQHNYSYYVLDTPSIPDAEYDRLLRTLSELETQHPEFLTA--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG       +V H +P LSL+  +  ++   F  RI       +   + F  E
Sbjct: 57  DSPTQKVGGAALAKFEQVAHQVPMLSLDNAFGEDEFSGFNRRIKERLMSTE--ELTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGE 190
           PK+DG  ++I Y  G  V AA RGDG +GE+++  ++ I  +P  L  +     +EVRGE
Sbjct: 115 PKLDGLAVSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDDYPRELEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V++    F  LN E    G K + NPRNAA+G LR+L+      R L F+ +  G  ++ 
Sbjct: 175 VFMDSAGFEKLNAEAEKRGDKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADG 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              +  Y+ L K+   G P+    +        ++YYN++ + RS L Y+IDG+V KV++
Sbjct: 235 TLPEDHYQQLAKLTDWGLPLCPETKLVEGPKAALAYYNDILTRRSELKYEIDGVVIKVNK 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG  AR+PRW I++KF  ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  +
Sbjct: 295 KALQERLGFVARAPRWAIAYKFPAQEEITQLLDVEFQVGRTGAITPVARLEPVFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            ++VGD V+++RAG+VIP++  +++ +R  DA+  
Sbjct: 355 SNATLHNADEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLEQRPSDAKEI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CPIC S + R          A  RCTGGL C AQ+ + +KHF SR A +I+GLG 
Sbjct: 404 VFPTMCPICDSHIERVEGE------AVARCTGGLVCQAQRKQAIKHFASRKALDIDGLGD 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +D     E     I+ PAD+F L++         E++   G  S  NL  +++  +  
Sbjct: 458 KIVDQLVDRE----LIKTPADLFILKQ------GHFESLERMGPKSAKNLVAALDDAKTT 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L +F++SLGIR VG   A++LA ++L+ +N                  LI V  VG+I+
Sbjct: 508 TLAKFLYSLGIREVGEATAQNLANHFLTLENVIDA----------SIEQLIEVSDVGEIV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           A+ +  F+    N+  V  L+ +                +     V TGTL  + R+ A+
Sbjct: 558 AKHVRGFFTEEHNLTVVNELIAQGINWPQLTAPSEQEQPLAGLTYVLTGTLNTLNRNDAK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             + QLGA VS  +S KTD ++ G+  GSKL KAQ+LG++I+ E+  + LL+ +N
Sbjct: 618 ARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQELGIEILTEDDLITLLETHN 672


>gi|125973550|ref|YP_001037460.1| DNA ligase, NAD-dependent [Clostridium thermocellum ATCC 27405]
 gi|256003369|ref|ZP_05428360.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 2360]
 gi|281417755|ref|ZP_06248775.1| DNA ligase, NAD-dependent [Clostridium thermocellum JW20]
 gi|166215580|sp|A3DE88|DNLJ_CLOTH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|125713775|gb|ABN52267.1| DNA ligase, NAD-dependent [Clostridium thermocellum ATCC 27405]
 gi|255992659|gb|EEU02750.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 2360]
 gi|281409157|gb|EFB39415.1| DNA ligase, NAD-dependent [Clostridium thermocellum JW20]
 gi|316940208|gb|ADU74242.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 1313]
          Length = 663

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 234/706 (33%), Positives = 382/706 (54%), Gaps = 46/706 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
              K +  L + ++YH   YY    P I D EYD L R  + +    PDL     P+ P 
Sbjct: 2   DIEKRILELREILNYHSHKYYVEDAPEISDFEYDELYRELEKLEQERPDLI---TPDSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            +IGG+      KV H++   SL  +++ E+L  F  R+         + + + +E KID
Sbjct: 59  QRIGGKPLEGFKKVVHAVQMQSLSDVFSREELLAFDRRVREAVG----DDVEYVVEKKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++ YE G F   A RGDG  GEDV+  ++ I TIP  L      ++EVRGEV+ISK
Sbjct: 115 GLSVSLVYENGVFTRGATRGDGLVGEDVTQNLKTIRTIPLRL-KRDLPLLEVRGEVFISK 173

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254
            DF+ +N+E  A G++ +ANPRNAA+G LR+L+P     R L+ FV  + +      K  
Sbjct: 174 KDFIKINEEQEAAGQQLFANPRNAAAGSLRQLDPKVTSQRKLDIFVFNIQRIEGQSFKTH 233

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L+ ++ LGF  + G +     + +    N +   R  + ++IDG V KV+    ++ 
Sbjct: 234 SETLEFLKELGFKTSPGYKVCKDINAVWEEINRIGEERGEIDFEIDGAVVKVNSLEQREI 293

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   ++PRW +++K+  +   T +  I + +GRTG+LTP+A  +PV + G+ ++ ATLH
Sbjct: 294 LGSTIKAPRWAVAYKYPAEVKETVVKKITVNVGRTGVLTPIAIFDPVRLAGSTVSRATLH 353

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N DYIK            +DIR+GD V +++AG++IP+VVD++  +R  +   F+ P  C
Sbjct: 354 NMDYIK-----------EKDIRIGDTVRIRKAGDIIPEVVDVVFEKRSGNEAEFNMPEQC 402

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C + VVR+         AA+RCTG + CSAQ   ++ HF SRDA NIEGLG   ++  
Sbjct: 403 PVCGADVVREEGE------AAYRCTG-IECSAQLYRKIVHFASRDAMNIEGLGPAIIEVL 455

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +       I+  AD++ L + ++     + NI   G  SV NL  SI K +  +++R I
Sbjct: 456 LEK----GLIKEIADLYYLHKEKE----TLVNIERMGKKSVENLLASIEKSKQNNIDRLI 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F  GIRH+G   A+ L++ + S                     ++ +P  G+ +A+++ +
Sbjct: 508 FGFGIRHIGLRAAQLLSENFESLDALMNA----------SAEDIMAIPEFGEKMAKSVEQ 557

Query: 615 FYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F++  +N   VE L      ++    +K   +  E K  V TGTL    R +A+E +   
Sbjct: 558 FFRQKQNRDTVEKLKAAGVNTVSFGKKKIKDNRFEGKTFVLTGTLPSFTRKEAEEIIKSF 617

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G   S  +S+KTD ++ G++ GSKL+KA++LG++I++E++F  +++
Sbjct: 618 GGKTSGSVSKKTDYVLAGEDAGSKLQKAKELGIEIIDEDKFRKMIE 663


>gi|296046583|gb|ADG86433.1| NAD-dependent DNA ligase [Francisella novicida]
          Length = 673

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 243/715 (33%), Positives = 381/715 (53%), Gaps = 47/715 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++     ++++ L   +  H   YY    P I D+EYD L ++  A+    P+L  +   
Sbjct: 1   MTP-SISEQINHLRSTLEQHSYNYYVLDTPSIPDAEYDRLLQQLSALETQHPELITA--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG       +V H +P LSL+  ++ ++   F  RI       +   + F  E
Sbjct: 57  DSPTQKVGGAALSKFEQVAHQVPMLSLDNAFSEDEFIAFNRRIKERLMSTE--ELTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PK+DG  ++I Y  G  V AA RGDG +GE+V+  ++ I  +P  L   + P  +EVRGE
Sbjct: 115 PKLDGLAVSIIYRDGVLVQAATRGDGLTGENVTQNVKTIRNVPLKLRGSDYPAELEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SE 248
           V++    F   N E    G K + NPRNAA+G LR+L+      R L F+ +  G     
Sbjct: 175 VFMDNAGFEKFNIEAEKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADG 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A+  Y+ L+K+   G P+    +        ++YY ++ + R  L Y+IDG+V K+++
Sbjct: 235 SIAEDHYQQLEKLTDWGLPLCPETKLVEGPQAALAYYTDILTRRGELKYEIDGVVIKINQ 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG  AR+PRW I++KF  ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  +
Sbjct: 295 KALQERLGFVARAPRWAIAYKFPAQEEITKLLDVEFQVGRTGAITPVARLEPVFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            ++VGD V+++RAG+VIP++  +++  R  DA+  
Sbjct: 355 SNATLHNGDEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CPIC S V +          A  RCTGGL C AQ+ + +KHF SR A +I+GLG 
Sbjct: 404 EFPVTCPICDSHVEKVEGE------AVARCTGGLVCPAQRKQAIKHFASRKALDIDGLGD 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +D     E     I+ PAD+F L++         E++   G  S  NL  ++   +  
Sbjct: 458 KIVDQLVDRE----LIKTPADLFILKQ------GHFESLERMGPKSAKNLVTALQDAKAT 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L +F++SLGIR  G    ++LA ++L+ +N                 SL +V  VG+I+
Sbjct: 508 TLAKFLYSLGIREAGEATTQNLANHFLTLENVINA----------SIDSLTQVSDVGEIV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           A  +  F+    N+  V AL+++                +     V TGTL  + R+ A+
Sbjct: 558 ATHVRSFFAEQHNLDVVNALVEQGINWPELTPPSAQEQPLAGLVYVLTGTLNTLNRNDAK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             + QLGA VS  +S KTD ++ G+  GSKL KAQ LG+ ++ EE  + LL+Q+N
Sbjct: 618 ARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDVLTEEDLINLLEQHN 672


>gi|312882689|ref|ZP_07742426.1| NAD-dependent DNA ligase LigA [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369650|gb|EFP97165.1| NAD-dependent DNA ligase LigA [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 670

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 247/712 (34%), Positives = 388/712 (54%), Gaps = 48/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E    +L+ L Q +  H   YY    P I DSEYD L R    +    P+L      
Sbjct: 1   MSKE-IETKLNHLRQLLHSHGIKYYVEDNPQIPDSEYDRLMRELLELESQHPELV---SL 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+       V H IP LSL+  ++ ++L  F  R+      ++     F  E
Sbjct: 57  DSPTQRVGGKPLDGFESVQHEIPMLSLDNAFDDQELDAFQKRMQDRLGDENIG--LFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PK+DG  +++ YE G  + AA RGDG +GE+++  +R I +IP  L   N P  IEVRGE
Sbjct: 115 PKLDGLAVSLLYENGVLIQAATRGDGATGENITENVRTIKSIPLQLQGSNWPARIEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE- 248
           V++ K  F  LN + +  G K + NPRNAA+G LR+L+     +R L+F+ + +G   E 
Sbjct: 175 VFMPKAGFDKLNQQALKKGEKVFVNPRNAAAGSLRQLDSKITASRPLSFYAYSVGVVEEG 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             +   YE   ++   G P+     Q +    +  +Y ++ + R  L Y+IDG+V KVD 
Sbjct: 235 ELSSSHYERFIQLTRWGLPMCPETLQVDGLSAVKDFYQDILNRRDDLAYEIDGVVIKVDN 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            ++Q++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+L+PV +GG  +
Sbjct: 295 VAVQERLGFVARAPRWAIAYKFPAQEEITVLNDVEFQVGRTGAITPVAKLKPVFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            + +GD V+++RAG+VIP++V +++  R    +P 
Sbjct: 355 SNATLHNADEIERL-----------GVMIGDEVVIRRAGDVIPQIVSVVLERRSDTTKPI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           +FP  CP+C S + R          A  RCTGG  C AQ+ E LKHFVSR A +++GLG+
Sbjct: 404 TFPICCPVCHSEIERLDGE------AVARCTGGFVCQAQRKEALKHFVSRKALDVDGLGE 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L   Q +       +   G  S  N+ D++   ++ 
Sbjct: 458 KVIEQLVDRE----LVSTPADLFKLSPHQLS------VLERMGPKSAKNVVDALEHSKST 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LAK++ +  N     +           +LI V  +GDI+
Sbjct: 508 TLSRFLYSLGIREVGEATATNLAKHFKTLANITAAPH----------DALIEVQDIGDIV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKA 666
           A+ I  F+   +N   ++ LL +        +   N    ++ K +V TG+L ++ R  A
Sbjct: 558 AKHITAFFSQQQNQTVIDDLLSQGIEWSDIEDNHANTPQVLQGKVVVLTGSLSQLNRSDA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +E +  LGA V+  +S+KTDI+  G+N GSKL KAQ LG++I  E+  + L+
Sbjct: 618 KEALESLGAKVTGSVSKKTDILFAGENAGSKLAKAQDLGIEIRTEQDLVALI 669


>gi|262402686|ref|ZP_06079247.1| DNA ligase [Vibrio sp. RC586]
 gi|262351468|gb|EEZ00601.1| DNA ligase [Vibrio sp. RC586]
          Length = 669

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 383/711 (53%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L+ L Q +  H   YY    P I D+EYD L R    I    P+L     P+ 
Sbjct: 1   MSNVEQRLTELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLEIEAQHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG        V H IP LSL+  ++  +L  F  R+             F  EPK
Sbjct: 58  PSLRVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRI--PAVQQSHFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L      + +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGVDFPVRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALQKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGQL 235

Query: 252 KG-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y+   +++  G P+    +   +   + S+Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 TTSHYQRFLQLKNWGLPICPETKVVTSLADVKSFYQDILQRRQSLVYEIDGVVIKVDDTQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+V+RAG+VIP++V +++  R  DA+P  F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVVRRAGDVIPQIVSVVLERRQADAKPIRF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS + R          A  RCTGGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTCCPVCQSEIERVEGE------AVARCTGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+        ++  +   G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA+++L+ +  AQ               LI VP VG ++A 
Sbjct: 509 PRFLYALGIREVGEATALNLAQHFLTLEAIAQA----------SIEQLIEVPDVGGVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   RN   +  L++     P +      V S +  K +V TG+  ++ R+ A+ 
Sbjct: 559 HLHAFFAQQRNQQVIAELVELGITWPVLAAVPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++++E+  +  ++
Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLTKAAELGIQVLDEQALIEFVK 669


>gi|307546309|ref|YP_003898788.1| DNA ligase, NAD-dependent [Halomonas elongata DSM 2581]
 gi|307218333|emb|CBV43603.1| DNA ligase, NAD-dependent [Halomonas elongata DSM 2581]
          Length = 700

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 238/717 (33%), Positives = 389/717 (54%), Gaps = 46/717 (6%)

Query: 8   PIEALSIEQ--ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             + ++      + E + L  E+   +  YY   +P + D++YD   RR   I   +P+L
Sbjct: 15  DTDDMTQPDPTIQDEAARLRAELDDANHRYYVLDEPRMTDADYDRKLRRLQEIETEYPEL 74

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            R   P+ P  ++G        ++ H++P LSL+  ++ ++L  F+ R+     + D  S
Sbjct: 75  VR---PDSPTQRVGAAPADGFPEIEHAVPMLSLDNAFDEDELAAFVKRVADRL-EIDGES 130

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEI 184
           I F  EPK+DG  +++ YE+G+      RGDG +GE +++ +R + +IP  L   + P++
Sbjct: 131 IAFCCEPKLDGAAVSLVYERGELTAGVTRGDGRTGEGITSNLRTLKSIPLKLRGRHWPDV 190

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGL 243
           +EVRGEV +   DF A+ND+    G K +ANPRNAA+G LR+L+P    +    F  +  
Sbjct: 191 LEVRGEVTMRHADFEAMNDKAREEGGKVFANPRNAAAGSLRQLDPRITDQRPLEFSAYQA 250

Query: 244 GKTSEIFAK-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            +            ++ ++   GF  +  +R      G++ Y   +   R  L YDIDG+
Sbjct: 251 ARIEPDAGDASHSALMARLSEFGFRTSAELRVVRGTEGVIEYCRALGEKRDALGYDIDGV 310

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVD+  LQ++LG  AR+PRW I+ KF  ++  TRL D++ Q+GRTG +TPVARLEPV+
Sbjct: 311 VIKVDDLRLQRELGFVARAPRWAIAFKFPAQEQVTRLNDVEFQVGRTGAITPVARLEPVS 370

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++NATLHN D I  L            + +GD V ++RAG+VIP+VV +   +R 
Sbjct: 371 VAGVTVSNATLHNADEIARL-----------GVMIGDTVAIRRAGDVIPQVVRVQEEDRP 419

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            DA+   FP  CP+C S++ R  +       A  RC+GGL C+AQ+ E LKHF SR A +
Sbjct: 420 DDAREIVFPERCPVCDSQIERLEDE------AVARCSGGLYCAAQRKEALKHFASRRALD 473

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGLG++ +D   +       ++ PAD+F L+  +  +      +   G+ S  NL  ++
Sbjct: 474 IEGLGEKLIDQLVE----LDWVQTPADLFALEAERLAT------LPRMGEKSSQNLVTAL 523

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K +  +L RFIF+LGIR VG   A +LA+++ + +               +  +L +V 
Sbjct: 524 EKAKATTLPRFIFALGIREVGEATAANLARHFGTLEALMDA----------ERDALEQVD 573

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            VG I+A  +  F++ P N   + AL +          +   + +E +  V TGT++ + 
Sbjct: 574 DVGPIVAAHVHTFFRQPHNRDTIAALRQAGVHWEEAEVEIGPTLLEGQSWVLTGTMESMT 633

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R + +  +  LGA V+  +S+KT  ++ G+  GSKL KA+QLGV++++E  FL  L+
Sbjct: 634 RDEGKARLQALGAKVAGSVSKKTACLVAGEAAGSKLTKAEQLGVEVIDEATFLERLE 690


>gi|82523924|emb|CAI78646.1| NAD-dependent DNA ligase [uncultured delta proteobacterium]
          Length = 670

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 262/714 (36%), Positives = 394/714 (55%), Gaps = 50/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A K +  L Q I YH+  YYQ   P I D+EYD L R    +   FPD    E  
Sbjct: 2   MDNNSAHKRIIELRQIIEYHNKRYYQQDAPEISDAEYDLLMRELHNLEAQFPD---DELA 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G          TH  P LSL   ++ E++  F  R+ R       ++I +  E
Sbjct: 59  SSPTQRVGAAPLAKFVSFTHPSPMLSLANAFSEEEIIDFDNRLKR---LASVDNISYVAE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEV 187
           PK+DG  + I YE G F+  A RGDG +GEDV+  ++ I T+P  +  +    IP  +EV
Sbjct: 116 PKLDGLAVNIIYENGFFIKGATRGDGTTGEDVTQNLKTINTLPLKIKKSGETLIPSFMEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+ K  F  LN   +  G +P+ANPRNAA+G LR+L+      R L+ F++G+G  
Sbjct: 176 RGEVYMEKEPFEKLNQRRVKDGEEPFANPRNAAAGSLRQLDSKITARRPLSIFLYGIGNI 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
             +     +E+LQ +   GFPVN  + QA   +  + Y+N + + R TLPYDIDG+V KV
Sbjct: 236 QGMNFPTHWELLQALSVWGFPVNKLIEQAKDINACIRYFNRIGNARDTLPYDIDGVVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D  +LQ  LG  +R+PRW ++ KF  +Q +T + DI IQ+GR G LTPVA +EPVN+GG 
Sbjct: 296 DGLALQNTLGNISRNPRWALACKFPAQQETTIIKDIIIQVGRMGTLTPVAIMEPVNVGGV 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++ ATLHNED I             +D+R+GD V+++RAG+VIP+VV +I   R    +
Sbjct: 356 MVSRATLHNEDEISK-----------KDVRIGDAVIIQRAGDVIPEVVKVIDKNRTDRGK 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  PS CP C S VVR           A RC   ++C AQ  E ++HF SR A +IEGL
Sbjct: 405 KFKMPSHCPECGSEVVRFEGE------VAQRCVN-ISCPAQLKEHIRHFASRGALDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++     F ++     I  PAD++ L +       K+  +    + S   L DSI + +
Sbjct: 458 GEKLSAQLFDAK----LIADPADLYFLTKD------KLLELDRQAEKSAQKLIDSIARSK 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           N  L++FI++LGIRHVG   A+ LA Y+ S +N                  L  +  +G 
Sbjct: 508 NPPLDKFIYALGIRHVGERTAKLLAGYFGSIENLIAA----------KSEDLTVINEIGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            I+ +IVEF+  P+N   ++   K       + E + ++ +  K  VFTGT++++ R+KA
Sbjct: 558 EISASIVEFFHEPKNKAVMKKFEKAGVI-PQKKEISHNAPLAGKAFVFTGTMERMGRNKA 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ V  +G  V + +++KT  ++ G  PGSKL+KA   G+KI++E++FL L+ +
Sbjct: 617 KDIVENMGGTVQSGVTKKTTYVVAGAEPGSKLDKANSSGIKIISEDEFLKLIGK 670


>gi|189425977|ref|YP_001953154.1| DNA ligase, NAD-dependent [Geobacter lovleyi SZ]
 gi|254781338|sp|B3E8F8|DNLJ_GEOLS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189422236|gb|ACD96634.1| DNA ligase, NAD-dependent [Geobacter lovleyi SZ]
          Length = 683

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 257/708 (36%), Positives = 385/708 (54%), Gaps = 44/708 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            + A+   + L + + +H+ CYY+   P I D+EYDAL R    I  A PDL     P+ 
Sbjct: 13  PDTAQLRAAELRRLLEHHNRCYYELDSPEISDAEYDALFRELQVIEAARPDLL---TPDS 69

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG+      +V H +P LSLE     +++R F  RI       D  ++ +  EPK
Sbjct: 70  PTLRVGGKPLARFSQVRHRMPMLSLENAMQEDEIRGFEQRIRSLLALPDTVALQYQCEPK 129

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + Y+ G  V A+ RGDG  GE+V+A IR +  +P  L+ +  P ++EVRGEVY
Sbjct: 130 MDGLAVELVYQDGLLVQASTRGDGEVGEEVTANIRTVRNVPLRLTGDNLPALLEVRGEVY 189

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251
           +    F  LN +    G  P+ANPRNAA+G +R+L+P     R L    +G+G   E  A
Sbjct: 190 LPLAAFQQLNQQREEAGEPPFANPRNAAAGSIRQLDPAVVARRPLAMVCYGVG-VMETEA 248

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           + Q E++ ++   G PV++  RQ +   G ++ + +++  R +L Y+IDG+V KVD+  L
Sbjct: 249 RTQTELMSQLAAWGLPVSDQARQVSGIEGAIACFQDLQERRDSLLYEIDGMVIKVDDLRL 308

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LGE++RSPRW I+ KF  +QA+TR+ +I + +GRTG++TPVA LEPV + G  ++ A
Sbjct: 309 QQELGEKSRSPRWAIACKFPPRQATTRINEIILSVGRTGVITPVASLEPVELSGVTVSRA 368

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+            +DIRVGDRV+V+RAG+VIP VV +++++R    Q    P
Sbjct: 369 TLHNWDEIRR-----------KDIRVGDRVIVERAGDVIPAVVKVLLDKRSGTEQELPEP 417

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C SR  R+          A RC GGLAC  Q  E + HF SRDA +I+GLG + +
Sbjct: 418 ETCPVCGSRAAREAGE------VAVRCQGGLACPPQLAESIIHFASRDAMDIDGLGSKYI 471

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +           ++  AD++ L R               GD    NL  +I   +   L 
Sbjct: 472 EQLIS----LGLVKDIADLYRLTRDDFMQF------ERMGDKLAENLLAAIASSKQQELS 521

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFIF+LGIRHVG   AR+LA+ + S  N                  L  +  VG  +A +
Sbjct: 522 RFIFALGIRHVGERTARTLAERFGSIDNLQTAT----------LEELTSIRDVGPAVAIS 571

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           I  F+  P N   ++ L      +    EK V   +     VFTGTL  + R +A++ V 
Sbjct: 572 IRSFFDAPANQTVLQRLKAAGV-APTVEEKRVGGRLAGLTFVFTGTLATLGRDEAKKLVE 630

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             G  V+  +S+KTD ++ G   GSKLEKA+ LG+ +++E+ F  LL 
Sbjct: 631 AEGGNVTGSVSKKTDYVVAGSEAGSKLEKARNLGITVLSEDAFSKLLA 678


>gi|187477571|ref|YP_785595.1| DNA ligase [Bordetella avium 197N]
 gi|123752160|sp|Q2KUU5|DNLJ_BORA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|115422157|emb|CAJ48681.1| DNA ligase [Bordetella avium 197N]
          Length = 695

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 264/732 (36%), Positives = 393/732 (53%), Gaps = 66/732 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            + AR++ + L  EI+ H+  YY Y +P I D++YDAL R   A+    P+L     P+ 
Sbjct: 5   EQAAREQAARLRAEIAQHNIRYYVYDEPSITDADYDALMRELMALEAQHPELV---TPDS 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK----DDNSIFFT 129
           P  ++G         V H++P LSL   +  ED+  F  R+    ++           + 
Sbjct: 62  PTQRVGAAPLAEFGSVRHAVPMLSLGNGFEDEDVLAFDKRVSDTLREAGLLGPAEQAHYF 121

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E K+DG  I++RYE G+ V AA RGDG  GEDV+A IR I  IP  L    P ++EVRG
Sbjct: 122 CELKLDGLAISLRYENGELVQAATRGDGQEGEDVTANIRTIRAIPLQLRAGAPAVLEVRG 181

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS- 247
           EV +++ DF  LN +  A G K + NPRNAA+G LR+L+P     R L FF +  G+   
Sbjct: 182 EVLMNRADFEKLNQKQAARGEKIFVNPRNAAAGSLRQLDPRVTAQRPLRFFAYSWGEVQG 241

Query: 248 ------------------EIFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEM 288
                              +       ML  +  LG P       +A    G++++Y  +
Sbjct: 242 LSRDDAPAFDEASPGLVSTLPRDTHGGMLDWLAGLGLPVNVRFNHKAQGAEGLLAFYRRI 301

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
            + R +LPYDIDGLVYKVD  + Q+ LG  AR+PRW ++HKF  ++A+T LLDI++Q+GR
Sbjct: 302 GAERGSLPYDIDGLVYKVDALAAQRVLGYVARAPRWALAHKFPAEEATTELLDIEVQVGR 361

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG +TPVARL+PV +GG  +TNATLHNED I+            +D+R+GDRV+V+RAG+
Sbjct: 362 TGAITPVARLKPVFVGGVTVTNATLHNEDEIRR-----------KDVRIGDRVIVRRAGD 410

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           VIP+VV  ++ +R  +   F  P+ CPIC S + R ++       A  RCTGGL C AQ+
Sbjct: 411 VIPEVVGPVLEKRSGELPQFVMPTHCPICGSAIERLVDE------AIARCTGGLFCPAQR 464

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
            + L H   R A +IEGLG++ ++    +     S++  AD+F L         ++  + 
Sbjct: 465 KQTLLHAAGRKALDIEGLGEKLVEQLVDN----GSLKTLADVFRLNA------FELAALD 514

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
             G  S  NL  +I++ R  SL R +F+LGIRHVG   AR +A+++ +            
Sbjct: 515 RMGKKSADNLVAAIDQARRPSLGRLLFALGIRHVGETTARDVARHFGNIDAIMDA----- 569

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
                D  +L+ VP VG ++A +I  F+Q   N   +  L K+         +  S ++ 
Sbjct: 570 -----DEAALLAVPDVGPVVAGSIHRFFQEAHNREVIRELEKQGV-HPQAEAQLQSGDLA 623

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K  V TGT+    R +A  ++   G  VS  +S+KT  ++ G+  GSKL KA++LGV I
Sbjct: 624 GKTFVLTGTMPTWSRDEATRHILAAGGKVSGSVSKKTAYVVAGEEAGSKLVKARELGVTI 683

Query: 709 MNEEQFLFLLQQ 720
           ++E+    LL Q
Sbjct: 684 LDEDGLKALLSQ 695


>gi|77360026|ref|YP_339601.1| NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis TAC125]
 gi|123730523|sp|Q3IKB8|DNLJ_PSEHT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76874937|emb|CAI86158.1| NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis TAC125]
          Length = 673

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 243/712 (34%), Positives = 379/712 (53%), Gaps = 46/712 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
               ++++ L   +  H   YY    P I D+EYD L ++  A+    P+L  +   + P
Sbjct: 3   SSISEQINHLRSTLEQHSYNYYVLDTPSIPDAEYDRLLQQLSALETQHPELITA---DSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K+GG       +V H +P LSL+  ++ ++   F  RI       +   + F  EPK+
Sbjct: 60  TQKVGGAALSKFEQVAHQVPMLSLDNAFSEDEFIAFNRRIKERLMSTE--ELTFCCEPKL 117

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193
           DG  ++I Y  G  V AA RGDG +GE+V+  ++ I  +P  L   + P  +EVRGEV++
Sbjct: 118 DGLAVSIIYRDGVLVQAATRGDGLTGENVTQNVKTIRNVPLKLRGSDYPAELEVRGEVFM 177

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFA 251
               F   N E    G K + NPRNAA+G LR+L+      R L F+ +  G       A
Sbjct: 178 DNAGFEKFNIEAEKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIA 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           +  Y+ L+K+   G P+    +        ++YY ++ + R  L Y+IDG+V K+++ +L
Sbjct: 238 EDHYQQLEKLTDWGLPLCPETKLVEGPQAALAYYTDILTRRGELKYEIDGVVIKINQKAL 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  AR+PRW I++KF  ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  ++NA
Sbjct: 298 QERLGFVARAPRWAIAYKFPAQEEITKLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L            ++VGD V+++RAG+VIP++  +++  R  DA+   FP
Sbjct: 358 TLHNGDEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CPIC S V +          A  RCTGGL C AQ+ + +KHF SR A +I+GLG + +
Sbjct: 407 VTCPICDSHVEKVEGE------AVARCTGGLVCPAQRKQAIKHFASRKALDIDGLGDKIV 460

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D     E     I+ PAD+F L++         E++   G  S  NL  ++   +  +L 
Sbjct: 461 DQLVDRE----LIKTPADLFILKQ------GHFESLERMGPKSAKNLVTALQDAKATTLA 510

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           +F++SLGIR  G    ++LA ++L+ +N                 SL +V  VG+I+A  
Sbjct: 511 KFLYSLGIREAGEATTQNLANHFLTLENVINA----------SIDSLTQVSDVGEIVATH 560

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +  F+    N+  V AL+++                +     V TGTL  + R+ A+  +
Sbjct: 561 VRSFFAEQHNLDVVNALVEQGINWPELTPPSAQEQPLAGLVYVLTGTLNTLNRNDAKARL 620

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            QLGA VS  +S KTD ++ G+  GSKL KAQ LG+ ++ EE  + LL+Q+N
Sbjct: 621 QQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDVLTEEDLINLLEQHN 672


>gi|239815926|ref|YP_002944836.1| DNA ligase, NAD-dependent [Variovorax paradoxus S110]
 gi|239802503|gb|ACS19570.1| DNA ligase, NAD-dependent [Variovorax paradoxus S110]
          Length = 694

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 242/719 (33%), Positives = 377/719 (52%), Gaps = 66/719 (9%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +++  H   YY    P + D+EYD L +R  A+   +P+L     P+ P  ++GG++ 
Sbjct: 14  LSEQLHKHAHLYYVLDAPELPDAEYDRLFQRLQALEAEYPEL---RTPDSPTQRVGGKVL 70

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLR-----KFITRIYRFWQKKDDNS-IFFTLEPKIDGT 137
               KV H +P LS   I    D+       F  R+ +     +D   + +  E K DG 
Sbjct: 71  EGFVKVRHKVPMLS---IRTETDISPGGASAFDARVRKELGLAEDGPQVEYVCELKFDGL 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + +RYE G  V AA RGDG  GE+V+  IR +  IP  L+   P ++EVRGE+Y+ + D
Sbjct: 128 AMNLRYENGVLVQAATRGDGEVGEEVTQNIRTVREIPLRLNGKAPPVVEVRGEIYMKRAD 187

Query: 198 FLALNDEMI------AVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSE-- 248
           F ALN+             K + NPRNAA+G +R+L+P        +FF +GLG+ +   
Sbjct: 188 FEALNERQREKIAAGQKNEKVFVNPRNAAAGAVRQLDPAIAAARPLSFFAYGLGEVTPAS 247

Query: 249 ---IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                   Q++ LQ+    GFPV     +A     +++++  +   R  LPYDIDG+VYK
Sbjct: 248 EGGPEFPTQFDWLQQFHAWGFPVATQTARATGAIELIAFHENIGRQRDALPYDIDGVVYK 307

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD   LQ++LG  +R PRW ++HK+  ++  T +L I++Q+GRTG LTPVA+L PV +GG
Sbjct: 308 VDSIELQRRLGFVSREPRWAVAHKYPAQEQITEVLGIEVQVGRTGKLTPVAKLAPVFVGG 367

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE--RHP 423
             +TNATLHNED  +            +D+RVGD+V+V+RAG+VIP+VV ++     R  
Sbjct: 368 VTVTNATLHNEDEARR-----------KDVRVGDKVIVRRAGDVIPEVVGVVPESLARPE 416

Query: 424 DAQP--FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             +   F+ P  CP+C S  +R+           +RCTGGL C+AQ+ E + HF +R A 
Sbjct: 417 GERGLLFTMPHQCPVCGSEALREEGE------VDYRCTGGLFCAAQRKEAILHFAARRAV 470

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I+GLG + ++        A  IR   D++ L          +  +    D S  NL D+
Sbjct: 471 DIDGLGDKLVEQLVD----ANLIRTLPDLYKL------GFATLAGLDRMADKSAKNLVDA 520

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +   +  +L RF+F LGIRHVG   A+ L+K++                       L+ V
Sbjct: 521 LEASKKTTLPRFLFGLGIRHVGESTAKDLSKHFGKLDAIMDASE----------EQLLEV 570

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
             VG ++AQ++  F+  P N   VE L    ++   G         +     V TGTL  
Sbjct: 571 NDVGPVVAQSLRTFFDQPHNREVVEQLRACGLTWEEGEPAARAPKPLAGLTFVITGTLPT 630

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + R +A++ +   GA V+  +S+KT  ++ G+  GSKL+KA+++GV++++E + L LL 
Sbjct: 631 LSRDEAKDKLEAAGAKVAGSVSKKTSYLVAGEEAGSKLDKAREIGVEVIDEARMLELLA 689


>gi|30249713|ref|NP_841783.1| NAD-dependent DNA ligase [Nitrosomonas europaea ATCC 19718]
 gi|75540341|sp|Q82TW6|DNLJ_NITEU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|30180750|emb|CAD85664.1| NAD-dependent DNA ligase [Nitrosomonas europaea ATCC 19718]
          Length = 681

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 253/722 (35%), Positives = 382/722 (52%), Gaps = 52/722 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S     + L +L   I+ HD  YY    P+I D+EYDAL R    +   +P L     P
Sbjct: 2   ISENTIEERLQALRAAIALHDFHYYVQDAPVIPDAEYDALFRTLQQLEQQYPHLV---TP 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G        ++TH  P LSL   ++ E++  F  RI         + + + +E
Sbjct: 59  DSPTQRVGAPPLKVFAQLTHQTPMLSLANAFSEEEVTAFDRRIREALNI---DRVDYAVE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEVRGE 190
           PK DG  I++ Y  G     A RGDG++GED++  +R IP+IP  L +  P    EVRGE
Sbjct: 116 PKFDGLAISLIYANGILTKGATRGDGYTGEDITLNLRTIPSIPLRLQVPFPTGQFEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLG--KTS 247
           V + K DF  LN++    G K + NPRNAA+G LR+L+      R L FF +G+G     
Sbjct: 176 VVMLKTDFERLNEQQRKNGEKTFVNPRNAAAGSLRQLDSRITAMRRLTFFAYGIGAYHED 235

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +       E+L  +    F V          +G+++YY EM ++R +LPY+IDG+VYKV+
Sbjct: 236 QPIFSTHSEILAYLATQQFLVARQSSTVMGANGLLAYYREMNAVRLSLPYEIDGVVYKVN 295

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q++LG  +R+PR+ I+HKF  ++ ST LL I+IQ+GRTG LTPVARL PV +GG  
Sbjct: 296 DLAQQEKLGYVSRAPRFAIAHKFPAQEVSTELLAIEIQVGRTGALTPVARLAPVFVGGVT 355

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNATLHNED ++            + I +GD V+V+RAG+VIP+VV +IV  R   AQ 
Sbjct: 356 VTNATLHNEDEVQR-----------KQIMIGDTVIVRRAGDVIPEVVAVIVERRPTHAQA 404

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP+C S+ VR  +       A  RCTGGL C AQ+ + + HF SR A +I+GLG
Sbjct: 405 FVMPDHCPVCGSKAVRLPDE------AVTRCTGGLYCPAQRKQAILHFASRRAIDIDGLG 458

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ +D     E     +  PAD++ L          +  +      S  NL  +I   + 
Sbjct: 459 EKLVDQLIDRE----LVHTPADLYRL------DIDTLAGLERMAGKSARNLVTAIEDSKK 508

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RFI++LGIRHVG   A++LA +                    +   L ++P +G I
Sbjct: 509 TTLPRFIYALGIRHVGEATAKALASHTGDLDRLMD----------MNAEQLQQIPDIGPI 558

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IE--NKKLVFTGTLQKIQ 662
           +AQ+I +F+    N   +E LL               S    +    K  V TGTL  + 
Sbjct: 559 VAQSIADFFSEAHNREVIEQLLSCGLQWEKPSHIAQPSSRTNLAVPGKTFVLTGTLPTMT 618

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R +A+  + Q G  V+  +S  T  ++ G +PGSK  +A +LG+ +++E+Q L LL+  +
Sbjct: 619 RDQAKNRIEQQGGKVTGSVSSATSYVVAGSDPGSKYARAIELGIPVLDEDQLLSLLRDTS 678

Query: 723 TT 724
           ++
Sbjct: 679 SS 680


>gi|260912664|ref|ZP_05919150.1| DNA ligase [Pasteurella dagmatis ATCC 43325]
 gi|260633042|gb|EEX51207.1| DNA ligase [Pasteurella dagmatis ATCC 43325]
          Length = 673

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 248/709 (34%), Positives = 391/709 (55%), Gaps = 46/709 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  + E+  L + +  ++  Y+    P + D+EYD L  +   +   +P        
Sbjct: 1   MS-EPIQFEMEQLRKTLRRYEYQYHVLDNPTVPDAEYDRLFHQLKKLEREYPQFI---TE 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G +      +VTH IP LSL+ +++ ++ + F+ RI           + F  E
Sbjct: 57  DSPTQRVGAKPLSGFAQVTHEIPMLSLDNVFSDDEFKAFVKRIQDRL-LVLPKQLTFCCE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PK+DG  ++I Y  GK V AA RGDG +GED+++ IR I  IP  L   N P  +EVRGE
Sbjct: 116 PKLDGLAVSILYVDGKLVQAATRGDGTTGEDITSNIRTIRNIPLQLLMDNPPGRLEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS-E 248
           V++ +  F ALN++ +  G K +ANPRNAA+G LR+L+P   ++       + +G     
Sbjct: 176 VFMPQAGFEALNEQALIKGEKTFANPRNAAAGSLRQLDPKITSQRPLVLNAYSIGIAEGV 235

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 +E LQ ++ +G PVNN ++  +    ++ +Y  +   RS L YDIDG V K++E
Sbjct: 236 ELPVTHFERLQWLKSIGIPVNNEIQLCDGIENVLDFYRTIMKKRSDLGYDIDGTVLKINE 295

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+L PV + G  +
Sbjct: 296 IALQQELGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLAPVFVAGVTV 355

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L           D+ +GD V+++RAG+VIP+++ ++  +R  DA+  
Sbjct: 356 SNATLHNGDEIARL-----------DVAIGDTVIIRRAGDVIPQIIGVVHEKRPADAKKI 404

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FPS CP+C S +VR          A  RCTGGL C+AQ+ E LKHFVSR A +I+G+G 
Sbjct: 405 EFPSNCPVCDSIIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGA 458

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     I  PAD+F L        T +  +   G  S  N  DS+ K +  
Sbjct: 459 KLIEQLVDREQ----IHTPADLFKL------DLTTLMRLERMGPKSAQNALDSLEKAKKT 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFIF+LGIR VG   A +LA Y+ +     +               L +V  VG+++
Sbjct: 509 TLARFIFALGIREVGEATALNLANYFKTLTALKEAT----------LEQLQQVQDVGEVV 558

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQ 667
           A  I  F++ P N+  V+ LL +              +  + K +V TGTL ++ R +A+
Sbjct: 559 ANRIFVFWREPHNVEVVDDLLAQGIHWDAVEITEANDNPFKEKTIVLTGTLTQMGRTEAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
             + +LGA VS  +S KTD++I G++ GSKL KA +L V++++E+ FL 
Sbjct: 619 ALLQRLGAKVSGSVSAKTDLVIAGESAGSKLTKANELNVQVIDEQTFLD 667


>gi|304321380|ref|YP_003855023.1| NAD-dependent DNA ligase [Parvularcula bermudensis HTCC2503]
 gi|303300282|gb|ADM09881.1| NAD-dependent DNA ligase [Parvularcula bermudensis HTCC2503]
          Length = 727

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 286/742 (38%), Positives = 420/742 (56%), Gaps = 43/742 (5%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
            E LS  +A  EL+ L  E++  D  Y     P++ D+ YDAL+RR +AI   FP L R+
Sbjct: 7   PEELSEAEAADELARLAHEMAAADIAYENAD-PVMTDAAYDALRRRNEAIEARFPHLRRA 65

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P  ++G   +    KV H++P LSL+  +  ED+ +F+TR+ RF +  ++  +  
Sbjct: 66  ---DSPSLRVGTAPSGRFAKVRHALPMLSLDNAFADEDVDEFVTRVRRFLRLGEEEPLRL 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T EPKIDG    +RYE+GKFV    RGDG  GED++  +  I  IP  L      I+EVR
Sbjct: 123 TAEPKIDGLSANLRYEEGKFVLGTTRGDGTVGEDITRNLATIENIPARLEGAPS-ILEVR 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+ K  F A+ND   A G K +ANPRNAA+G LR+ +P+    R L FF +  G+ S
Sbjct: 182 GEVYLGKEAFAAMNDAFAARGEKVFANPRNAAAGSLRQKDPSITADRPLRFFAYAWGEVS 241

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               + Q E ++++  LGF  N  +    T    +++Y  ++++R+ L YD+DG+VYKVD
Sbjct: 242 SPLGETQTEAVKRLSDLGFCTNELMGTFATAKEAIAHYRHIETLRAALDYDVDGVVYKVD 301

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               Q++LG  +RSPRW I+HKF+ ++A T L  IDIQ+GRTG LTP ARL PV +GG +
Sbjct: 302 RLDWQERLGAVSRSPRWAIAHKFSAEKAETVLERIDIQVGRTGALTPTARLRPVTVGGVV 361

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHNED I  L           D+R GD V V+RAG+VIP+++ ++  +R  +AQP
Sbjct: 362 VSNATLHNEDEIARL-----------DVREGDSVCVQRAGDVIPQILSVLTEKRPKEAQP 410

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           + FP+ CP+C S  VR+LN KTG+     RCTGGL C AQ +ERLKHFVSR A +I+GLG
Sbjct: 411 YRFPTHCPVCGSEAVRELNEKTGERDVVRRCTGGLICPAQGIERLKHFVSRKAMDIDGLG 470

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK---------------------IEN 526
            +Q++ F+        I  PADIFTL  R    T                          
Sbjct: 471 ARQIEDFYGR----HMIAEPADIFTLPARYHQGTFDVIGTSDLNSYKRLAPTATKPARWT 526

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
                  S+ NL+ +I   R+  L R IF+LGIRH+G    R +A+   +   F +  + 
Sbjct: 527 KEITNRKSLDNLFAAIEAARSRPLGRVIFALGIRHIGEMNGRLIAQGVETLSGFCRLGDR 586

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
           +   +      ++ +  +GD +  A+  F+  PRN  A++ L  E+SP+         S 
Sbjct: 587 LAKGDEAARQEMLAIDGIGDTVTDALAAFFHEPRNREALDRLAAEISPAAPPKPA-QDSR 645

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
              K +VFTG L+++ R +A+   T LGA VS  +S KTD ++ G   GSKL KA+ LGV
Sbjct: 646 FSGKTVVFTGKLERMSRDEAKARATSLGAKVSGSISAKTDYLVAGPGAGSKLTKAKDLGV 705

Query: 707 KIMNEEQFLFLLQQYNTTLRIH 728
            I+ E+++L  +     ++++ 
Sbjct: 706 DILTEDEWLEFISDEAVSVQLE 727


>gi|33602779|ref|NP_890339.1| DNA ligase [Bordetella bronchiseptica RB50]
 gi|81429836|sp|Q7WCJ7|DNLJ_BORBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33577221|emb|CAE35778.1| DNA ligase [Bordetella bronchiseptica RB50]
          Length = 696

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 257/728 (35%), Positives = 389/728 (53%), Gaps = 69/728 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ ++ L  EI  H+  YY +  P + D+EYDAL R   A+    P+L     P+ P  +
Sbjct: 9   QQAIARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELV---TPDSPTQR 65

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFFTLEPK 133
           +G         V H++P LSL   ++ ED+R F  R+    +       D  + +  E K
Sbjct: 66  VGAAPLAEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEYFCELK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I++RYE+G+   AA RGDG +GEDV+A IR I  +P  L      ++EVRGEV +
Sbjct: 126 LDGLAISLRYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLHGAPR-VLEVRGEVLM 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
           ++ +F  LN    A G K + NPRNAA+G LR+L+P     R L FF +  G+   +   
Sbjct: 185 NRAEFERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLPEG 244

Query: 253 G---------------------QYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKS 290
                                    ML  +  LG PVN     +     G++++Y  +  
Sbjct: 245 MPTRFDEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYERIGK 304

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
           +R+ LPYDIDG+VYKVD    Q+ LG  AR+PR+ ++HKF  ++A T+LL I++Q+GRTG
Sbjct: 305 LRADLPYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQVGRTG 364

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TPVARL PV +GG  +TNATLHNED I+            +D+R+GD V+V+RAG+VI
Sbjct: 365 AITPVARLAPVFVGGVTVTNATLHNEDEIRR-----------KDVRIGDTVIVRRAGDVI 413

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P+VV  ++ +R  DA+ F   + CPIC S + R          A  RCTGGL C+AQ+ +
Sbjct: 414 PEVVGPVLEKRPADAREFVMLTACPICGSAIERPEGE------AIARCTGGLFCAAQRKQ 467

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
            L H   R A +IEGLG++ +D    ++     ++  ADI++L         ++  +   
Sbjct: 468 TLLHAAGRKALDIEGLGEKLIDQLVDADR----VKSLADIYSLTA------FELAALERM 517

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
           G  S  NL  +I++ R  +L R +F+LGIRHVG   AR +A+++ S +            
Sbjct: 518 GKKSAENLVAAIDQARRPALGRLLFALGIRHVGETTARDVARHFGSMERIMDASE----- 572

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
                 +L+ VP VG ++A +I  F+  P N   VE L ++        E   +S +  K
Sbjct: 573 -----EALLAVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQGVHPQAEAEPEGTS-LAGK 626

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             V TGT+    R +A   +   G  VS  +S+KT  ++ G++ GSKL KAQ+LGV +++
Sbjct: 627 TFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYLVTGEDAGSKLTKAQELGVPVLD 686

Query: 711 EEQFLFLL 718
           E+    LL
Sbjct: 687 EDGLKALL 694


>gi|51893963|ref|YP_076654.1| NAD-dependent DNA ligase [Symbiobacterium thermophilum IAM 14863]
 gi|81388077|sp|Q67KI8|DNLJ_SYMTH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|51857652|dbj|BAD41810.1| NAD-dependent DNA ligase [Symbiobacterium thermophilum IAM 14863]
          Length = 673

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 246/710 (34%), Positives = 377/710 (53%), Gaps = 47/710 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A + +  L + I +H+  YY  ++P I D+ +D L +    +  AFPDL R   P
Sbjct: 1   MDRSWAERRIPELIETIRHHEYLYYVKNEPEISDAAFDELMQELKQLEEAFPDLRR---P 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       KV H  P  SL+  ++  DLR F  R+           + +  E
Sbjct: 58  DSPTQRVGGATAPDFAKVPHQPPMYSLDNAFSEADLRDFDRRVREGLG---GEPVSYVCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVR 188
            KIDG  I++RYE G FV  A RGDG +GEDV+  +R I +IP  L      +P  + VR
Sbjct: 115 LKIDGLSISLRYEDGLFVQGATRGDGETGEDVTENLRTIGSIPLRLDGTEAPVPPRLIVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247
           GEVY++K     LN  + A G+    NPRNAA+G LR+ +P     R L+ F++ +    
Sbjct: 175 GEVYMTKQVLEELNAALAAEGKPLLQNPRNAAAGGLRQKDPRKTRERRLDAFLYQVVDAE 234

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            +     +  LQ+++   F VN     A+T   ++ +    ++ R  LPY+IDGLV KV+
Sbjct: 235 ALGIADHWSALQRLQAWRFKVNPHRHLAHTIDEVLDWVAGWQARRHELPYEIDGLVIKVN 294

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q++LG  ++ PRW I++KF  ++  T ++ I +++GRTG++TP A L PV I G  
Sbjct: 295 DLAQQRRLGFTSKFPRWAIAYKFPAEERETTVVGISLEVGRTGVVTPSADLAPVRIAGTT 354

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHNEDYI+            +DIRVGD V+V++AGE+IP+VV ++  +R PDAQP
Sbjct: 355 VKRATLHNEDYIR-----------EKDIRVGDTVIVRKAGEIIPEVVRVVPEKRPPDAQP 403

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           ++FP  CP C + +VR          AA RCT  L C AQQ   + HF SRDA NIEGLG
Sbjct: 404 WTFPKTCPACGAELVRIEGE------AATRCTNNL-CPAQQYRAILHFASRDAMNIEGLG 456

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +  +            I   AD++ L  ++      +  +   G+ SV NL  +I+  R 
Sbjct: 457 EALVQSLLDH----GLIEDAADLYRLHEKRD----ALIRLERMGEKSVDNLLAAIDATRQ 508

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R IF+LGIRHVG   AR LA ++ S +   Q               L  +P +G  
Sbjct: 509 NPLHRLIFALGIRHVGERAARLLADHFGSMEAIEQA----------GLDELTAIPGLGPK 558

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKA 666
           IA+++  ++ +PR+   +  L       +G  +       +    +V TGTL +  R + 
Sbjct: 559 IAESVKNYFASPRSHQLLAKLRAAGVNMVGEKKAGPAEGPLAGMTVVVTGTLVRWSRKEI 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +E + QLG   +  +SRKT  ++ G+  GSKL+KAQ+LG+ ++ E++F  
Sbjct: 619 EELIQQLGGKAAGSVSRKTSFVVAGEAAGSKLQKAQELGIPVLTEDEFCE 668


>gi|295697355|ref|YP_003590593.1| DNA ligase, NAD-dependent [Bacillus tusciae DSM 2912]
 gi|295412957|gb|ADG07449.1| DNA ligase, NAD-dependent [Bacillus tusciae DSM 2912]
          Length = 677

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 256/722 (35%), Positives = 384/722 (53%), Gaps = 57/722 (7%)

Query: 12  LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           +S +  A + +  L   I  +D  YY    P++ D+EYD   R    +    P+L     
Sbjct: 1   MSDQGDAARRIEELRALIRRYDYHYYVLDDPLVDDAEYDRCMRELVELEARHPELV---T 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+ P  ++ G  + +  KV H  P LSL   ++  D+R+F  R+           + +  
Sbjct: 58  PDSPTQRVSGAPSEAFAKVIHREPMLSLANAFSEGDVREFDRRVRAAL---PGEDVEYVC 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  I++RYE G+FV  A RGDG  GED++  +R I  +P  L   +   +EVRGE
Sbjct: 115 ELKIDGLAISLRYENGEFVQGATRGDGELGEDITRNLRTIRVLPLRLPERVS--VEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH-------G 242
            Y+ K  FL +N E    G + +ANPRNAA+G LR+L+P     R L+ +++       G
Sbjct: 173 AYMPKKVFLRVNRERDEAGEQAFANPRNAAAGSLRQLDPRVTARRGLSLWMYAAVLGPDG 232

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
                    +   E+L+ +  LGFPVN   R       +  + NE   +R+TLPYDIDG+
Sbjct: 233 TVPGGPGPFRTHEEILKWLDTLGFPVNPHRRVCRNLEEVFQFLNEGDRLRNTLPYDIDGM 292

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV+    Q +LG  A+SPRW +++KFA +QA TRLL I++ +GRTG++TP A  EPV 
Sbjct: 293 VIKVNNLDQQNRLGATAKSPRWAMAYKFAPEQAETRLLTIEVSVGRTGVVTPTAVFEPVF 352

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++ A+LHNED I+            RDIR+GD V+V++AGE+IP+VV +  + R 
Sbjct: 353 LAGTTVSRASLHNEDLIR-----------ERDIRIGDIVVVEKAGEIIPEVVRVRADLRT 401

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            +   FS P  CP C S +VR           A RC     C AQ  E + HF SRDA N
Sbjct: 402 GEEHIFSMPKDCPACGSPLVRLEEE------VALRCVNP-DCPAQIQEGIIHFASRDAMN 454

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGLG+  +   ++       I   AD++ L+R Q         +   G  S  NL  +I
Sbjct: 455 IEGLGEALVAQLYRE----GLIHSVADLYELKREQLV------PLERMGAKSADNLLQAI 504

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + +  SLER +F LGIR++G + +R LA ++       +  +            L++VP
Sbjct: 505 ERSKQNSLERLLFGLGIRYIGEKASRVLAAHFKEMDALMEASS----------EELLKVP 554

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQK 660
            +G  +AQ+I  ++        +E L       +  G     V S +  K +V TGTL  
Sbjct: 555 DIGAKMAQSIRVYFGQESARRLIERLRAHGVNMVYRGAEAAPVPSRLAGKTVVLTGTLHA 614

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R +AQ++V +LG   +  +SRKTDI+I G++PGSKL KA+QLGV+++NE+QFL +L++
Sbjct: 615 MGRREAQDWVRRLGGKPTESVSRKTDIVIAGEDPGSKLVKARQLGVEVINEDQFLSILRE 674

Query: 721 YN 722
             
Sbjct: 675 AG 676


>gi|71907364|ref|YP_284951.1| NAD-dependent DNA ligase [Dechloromonas aromatica RCB]
 gi|123746888|sp|Q47FA0|DNLJ_DECAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71846985|gb|AAZ46481.1| NAD-dependent DNA ligase [Dechloromonas aromatica RCB]
          Length = 683

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 258/719 (35%), Positives = 380/719 (52%), Gaps = 54/719 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E   K  +    E+  H   YY    P I D+EYD L R    +   +P+L  +   + 
Sbjct: 4   PEDVAKRAAWYRSELERHSYAYYVLDAPTIPDTEYDKLFRELQELEQQYPELLTA---DS 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P +++GG          H +P LSL   +  E++  F  RI    +     ++ + +EPK
Sbjct: 61  PTHRVGGVPLKEFPPRQHGVPMLSLNNAFAPEEVEAFDKRIRDGLETIA--AVDYAVEPK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
            DG  I++ YE G F   A RGDG +GE+V+  +R +  IP  L     P +IE+RGEV 
Sbjct: 119 FDGLAISLTYENGVFTCGATRGDGVTGEEVTPNLRTLRCIPLRLRGEGWPALIEIRGEVL 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + K DF  LN      G K +ANPRNAA+G LR+L+      R L+FF +G+G  ++ + 
Sbjct: 179 MFKADFAELNARQRERGDKEFANPRNAAAGSLRQLDSKITAGRPLSFFAYGVGAGADALA 238

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   EM+  +   GFPV    R      G++ Y+ E+   R  LPYDIDG+VYKV+   
Sbjct: 239 VKTHGEMMGLLAAWGFPVAEERRVVQGVRGLLGYFVEIGVKRPGLPYDIDGVVYKVNRLD 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q QLG  +R+PR+ I+HKF  ++A T +L ID+Q+GRTG +TPVARL+PV +GG  +TN
Sbjct: 299 WQAQLGFVSRAPRFAIAHKFPAEEALTEVLGIDVQVGRTGAITPVARLKPVFVGGVTVTN 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD------ 424
           ATLHNED ++            +D+R+GD V+V+RAG+VIP+VV I+  +R         
Sbjct: 359 ATLHNEDEVRR-----------KDVRLGDTVIVRRAGDVIPEVVAIVPEKRPMRDLFGSE 407

Query: 425 --AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
               PF  P+ CP C S VV+  +       A  RCTGGL C AQ+ + L HF +R A +
Sbjct: 408 PLNPPFELPATCPECGSAVVKGDDE------AIARCTGGLYCPAQRKQALWHFAARRAMD 461

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGLG + +D        A  +  PAD++ L             +   G+ S  NL  +I
Sbjct: 462 IEGLGDKLVDQLVD----AGLVHSPADLYGLTVETLAG------LERMGEKSAQNLVAAI 511

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           +K R  +L RFIF LGIR+VG   AR LAK++          +  +            VP
Sbjct: 512 DKSRQTTLARFIFGLGIRNVGEATARDLAKHFGGLDALLAADSAALQM----------VP 561

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKI 661
            VG ++A+++  F+    N   ++ L +       G   +     +  K LV TGTL  +
Sbjct: 562 DVGPVVAESLAAFFAEAHNREVIDGLRRAGVSWPEGEPAQAGPQLLAGKTLVLTGTLPTL 621

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +R +A+  V   G  V+  +S+KTD ++ G+  GSKLEKAQ+LGV +++E + + LL +
Sbjct: 622 KRDEAKALVEAAGGKVAGSVSKKTDYVVAGEEAGSKLEKAQELGVPVIDEAELMKLLAK 680


>gi|156740882|ref|YP_001431011.1| DNA ligase [Roseiflexus castenholzii DSM 13941]
 gi|190359279|sp|A7NHP6|DNLJ_ROSCS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|156232210|gb|ABU56993.1| DNA ligase, NAD-dependent [Roseiflexus castenholzii DSM 13941]
          Length = 718

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 246/729 (33%), Positives = 380/729 (52%), Gaps = 58/729 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++     +   +L ++I YH+  YY   +P+I D+EYDAL R    +  A P+L     P
Sbjct: 1   MTSNDPVRRAETLREQIRYHNYRYYVLDEPVISDAEYDALMRELRELEAAHPELV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G   +    KV H +P LSL   ++   +R +  R  R      D  + F +E
Sbjct: 58  DSPTQRVGAPPSEQFAKVQHVVPMLSLANAFDEAGMRAWYDRTLRLLGS--DAQVAFVVE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP------------RVLSL 179
           PKIDG  +T+ Y  G  V  A RGDG  GEDV+A +R I +IP                 
Sbjct: 116 PKIDGLAVTLIYRNGVLVRGATRGDGEIGEDVTANLRTISSIPLRLGSFANDDSAPTNPT 175

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NF 238
            +P ++EVRGEVY+   DF+ LN+++   G K  ANPRNAA+G LR+ +P   +R    F
Sbjct: 176 AVPPLLEVRGEVYMRIADFMRLNEQLAVAGEKVAANPRNAAAGSLRQKDPAVTSRRPLRF 235

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F +G+G+   +  + Q+E L  +R LGFPVN   R+   F   ++Y  E  + R  L Y+
Sbjct: 236 FAYGVGQVEGVALQTQWETLHFLRALGFPVNRDARRFERFEEALAYCREWMTRRDELEYE 295

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           +DG+V K+D F+ Q +LG   R PRW I+ KF  ++A +RLLDI + +GRTG++TP A +
Sbjct: 296 VDGVVVKIDSFAQQAELGVVGRDPRWAIAFKFPAREAVSRLLDIVVNVGRTGVITPNAVI 355

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPVNIGG  + NA+LHN DYI             RDIR+GD V+VKRAG+VIP +V  +V
Sbjct: 356 EPVNIGGVTVRNASLHNADYI-----------AERDIRIGDYVIVKRAGDVIPHIVGPVV 404

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             R    + +  P+ CP C + + R           A+RC     C AQ   R++HFVSR
Sbjct: 405 ARRDGSERVWQMPATCPACGTPLERAEGE------VAYRCPNFGICPAQITRRIEHFVSR 458

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I G+G++Q+  F +       ++  AD++TL             I G+G   + NL
Sbjct: 459 SAMDIAGIGEKQVQLFVER----GWVQDVADLYTLTPEHFHG------IEGYGPKRIANL 508

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            ++I + ++  L R I  LGIR+VG  +A+ LA ++           ++ A        +
Sbjct: 509 LNAIAESKDRPLHRLIVGLGIRYVGEVVAQILADHFG----------SLDALAAASADEI 558

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTG 656
             +  +G  IA ++ E++  P +   +  L +    +  +          +  K  V TG
Sbjct: 559 DDLEGIGPAIAASVAEYFARPESKALIAKLKRVGVRTEAKGPAVAPKGDALAGKTFVITG 618

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GSKLEKAQQLGVKIMNEEQFL 715
           TL  + R +A   +   G  VS  +S+KTD ++VG  P G+K+ KAQ+LG+  ++E   L
Sbjct: 619 TLPSMSREEAGALIVAHGGRVSGSVSKKTDYLVVGSEPGGTKVAKAQELGIPTLDEAGLL 678

Query: 716 FLLQQYNTT 724
            L+   + +
Sbjct: 679 ALIGANDRS 687


>gi|260219439|emb|CBA26284.1| DNA ligase [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 696

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 260/717 (36%), Positives = 389/717 (54%), Gaps = 56/717 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K L +L +E+      YY    P++ D EYD L R    +    P+      P+ P  ++
Sbjct: 20  KRLQALREELHRLGHAYYVLDAPLVPDVEYDRLFRELQDLEAQHPEWV---TPDSPTQRV 76

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYRFWQK-KDDNSIFFTLEPKID 135
           GG++  +   V H++P LS+    + E      F TR+ +  +  + D  + +  E K D
Sbjct: 77  GGQVLDAFTSVRHAVPMLSIRTETDTESTGALAFDTRVRKELELNEGDAPVEYVAELKFD 136

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + +RYE+G  V AA RGDG  GEDV+  IR I  IP  L   +P ++EVRGEVY+ +
Sbjct: 137 GLAMNLRYEQGVLVQAATRGDGEYGEDVTQNIRTIGQIPLRLPDGVPPVLEVRGEVYMRR 196

Query: 196 NDFLALNDEMI------AVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248
           +DF ALN+           G K + NPRNAA+G +R+L+P     R L+FF +GLG+ + 
Sbjct: 197 DDFEALNERQRARIAAGEKGEKTFVNPRNAAAGAVRQLDPGIAAQRPLSFFAYGLGEVTP 256

Query: 249 -----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                      Y MLQ ++  GFPV   V  A     +++Y+  + + R +LP+DIDG+V
Sbjct: 257 AAEGGPDFGSHYAMLQTLKSWGFPVAAQVDTARGAPELIAYHQRIGAGRDSLPFDIDGVV 316

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKV+  +LQ++LG   R PRW ++HK+  ++  T +L ID+Q+GRTG LTPVA+L PV +
Sbjct: 317 YKVNSLALQQRLGFVTREPRWAVAHKYPAQEQLTTVLAIDVQVGRTGKLTPVAKLAPVFV 376

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHNED  +            +D+RVGD V+V+RAG+VIP+VV ++  +R  
Sbjct: 377 GGVTVTNATLHNEDEARR-----------KDVRVGDTVIVRRAGDVIPEVVSVLPEKREG 425

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DA  F+ P  CP+CQS  VR+         A +RCTGGL CSAQ+ + + HF  R A  +
Sbjct: 426 DAPQFTMPRICPVCQSAAVREEGE------ADYRCTGGLFCSAQRKQAILHFAQRRAVEV 479

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG + ++        A  IR   D++ L        + + ++    D S  N+ D++ 
Sbjct: 480 EGLGDKLVEQLVD----ANVIRNLPDLYRL------GLSALASLDRMADKSAQNIVDALE 529

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +  +L RF+F LGIRHVG   A+ LA+++ +     +           D  +L+ V  
Sbjct: 530 KSKQTTLPRFLFGLGIRHVGEATAKELARHFGTLDAIMEA----------DEEALLAVSD 579

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           VG I+AQ+I  F+    N   VE L    V+   G         +  K LV TGTL  + 
Sbjct: 580 VGPIVAQSIRTFFDQAHNREVVEQLRACGVTWPEGAPADAGPKPLAGKTLVLTGTLPTLG 639

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R  A++ +   G  VS  +S+KT  ++ G   GSKL+KA +LGV +++E   L LL+
Sbjct: 640 RDAAKDLIEAAGGKVSGSVSKKTHFVVAGAEAGSKLDKANELGVPVLDEAGLLELLK 696


>gi|166215832|sp|Q5ZWX6|DNLJ_LEGPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 673

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 249/713 (34%), Positives = 384/713 (53%), Gaps = 46/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +  ++ + +L+++I  +D  YY   +P++ D+EYD   +        +P       P
Sbjct: 1   MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G  + +   V H  P LSL  ++  ++L+ FI R      +  +  + F  E
Sbjct: 58  DSPTQRVSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAIEKLDE-PNQQLVFACE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  + + YE G   +AA RGDG  GE+++A I+ I ++P      N P++IEVRGE
Sbjct: 117 PKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG-KTSE 248
           VYI K DF A N     +G K +ANPRNAA+G LR+LNP    +R L  + +G+G     
Sbjct: 177 VYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDY 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L  ++  GF V+   R+A    G + YY  M + R+ LP++IDG+VYK+D 
Sbjct: 237 KLPNSHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDS 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ+QLG  +R+PR+  +HKF   +  TRL+ +D Q+GRTG +TPVARLEPV++GG  +
Sbjct: 297 ISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I             +DIR+GD V+++RAG+VIP+VV +I+ +R  +A+  
Sbjct: 357 SNATLHNFDEITR-----------KDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMI 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VVR+ +       A  RC GGL C AQ    + HF SR A  IEGLG 
Sbjct: 406 ELPKNCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGS 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +D           +   AD++ L          + N+   G+ S  NL  ++ K +  
Sbjct: 460 VLIDQLVDE----GIVHHLADLYEL------DLQTLANLPRMGEKSAKNLLSALEKSKKT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF+++LGIR +G   AR LA++Y   ++                  L+ +  +G + 
Sbjct: 510 TFNRFLYALGIREIGEAGARVLAEHYCDVESLKAAT----------IEELMTLNDIGPVA 559

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  IV F+    N+  ++ LL+     P   + + N  +    K +V TGTL  + R +A
Sbjct: 560 ASHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +  LGA VS  +S KTD ++ G   GSKL KA +LGV I+ E++FL  + 
Sbjct: 620 KAKLLALGAKVSGSVSSKTDYVVAGSEAGSKLIKATELGVAIIEEDEFLKWVN 672


>gi|52841193|ref|YP_094992.1| DNA ligase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52628304|gb|AAU27045.1| DNA ligase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 683

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 249/713 (34%), Positives = 384/713 (53%), Gaps = 46/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +  ++ + +L+++I  +D  YY   +P++ D+EYD   +        +P       P
Sbjct: 11  MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SP 67

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G  + +   V H  P LSL  ++  ++L+ FI R      +  +  + F  E
Sbjct: 68  DSPTQRVSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAIEKLDE-PNQQLVFACE 126

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  + + YE G   +AA RGDG  GE+++A I+ I ++P      N P++IEVRGE
Sbjct: 127 PKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGE 186

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG-KTSE 248
           VYI K DF A N     +G K +ANPRNAA+G LR+LNP    +R L  + +G+G     
Sbjct: 187 VYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDY 246

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L  ++  GF V+   R+A    G + YY  M + R+ LP++IDG+VYK+D 
Sbjct: 247 KLPNSHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDS 306

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ+QLG  +R+PR+  +HKF   +  TRL+ +D Q+GRTG +TPVARLEPV++GG  +
Sbjct: 307 ISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTV 366

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I             +DIR+GD V+++RAG+VIP+VV +I+ +R  +A+  
Sbjct: 367 SNATLHNFDEITR-----------KDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMI 415

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VVR+ +       A  RC GGL C AQ    + HF SR A  IEGLG 
Sbjct: 416 ELPKNCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGS 469

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +D           +   AD++ L          + N+   G+ S  NL  ++ K +  
Sbjct: 470 VLIDQLVDE----GIVHHLADLYEL------DLQTLANLPRMGEKSAKNLLSALEKSKKT 519

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF+++LGIR +G   AR LA++Y   ++                  L+ +  +G + 
Sbjct: 520 TFNRFLYALGIREIGEAGARVLAEHYCDVESLKAAT----------IEELMTLNDIGPVA 569

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  IV F+    N+  ++ LL+     P   + + N  +    K +V TGTL  + R +A
Sbjct: 570 ASHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEA 629

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +  LGA VS  +S KTD ++ G   GSKL KA +LGV I+ E++FL  + 
Sbjct: 630 KAKLLALGAKVSGSVSSKTDYVVAGSEAGSKLIKATELGVAIIEEDEFLKWVN 682


>gi|288554984|ref|YP_003426919.1| NAD-dependent DNA ligase LigA [Bacillus pseudofirmus OF4]
 gi|288546144|gb|ADC50027.1| NAD-dependent DNA ligase LigA [Bacillus pseudofirmus OF4]
          Length = 668

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 248/712 (34%), Positives = 387/712 (54%), Gaps = 54/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  ++A K + +L +++  +   YY   +P++ D+EYD L +   A+    P+L      
Sbjct: 1   MDRQEAEKRVQTLREKLEEYGYHYYVLDQPLVTDAEYDQLMQELIALEGEHPELV---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE      KV H IP LSL   +N +DLR F  R+         +++ ++ E
Sbjct: 58  DSPSVRVGGEPLPFFEKVEHQIPMLSLGNAFNDQDLRDFDRRVRERVG----DNVTYSCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE GKFV  A RGDG  GED++  ++ IP IP  L L     +EVRGE 
Sbjct: 114 LKIDGLAVSLTYENGKFVRGATRGDGTIGEDITNNLKTIPAIP--LKLKQEASLEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F ALN+     G + +ANPRNAA+G LR+L+P     R L+ F++ +G      
Sbjct: 172 YMPKKSFEALNEAKSEAGEEKFANPRNAAAGSLRQLDPKIAAKRNLSIFIYAIGNAEGQD 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +E L  ++ LGF VNN  +   T   ++ Y NE    R+ LPY+IDG+V KVD   
Sbjct: 232 LASHHEGLAYLKELGFKVNNESKHCATIEEVIEYTNEWLDKRADLPYEIDGIVIKVDSIE 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            QK+LG  A+SPRW  + KF  ++  T L DI++ +GRTG++TP A L+PV + G  +  
Sbjct: 292 QQKELGFTAKSPRWATAFKFPAEEVVTVLRDIELSVGRTGVVTPTAILDPVVVAGTTVKR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +D+++GD V+VK+AG++IP+VV+++ + R    + FS 
Sbjct: 352 ASLHNEDLIR-----------EKDVKLGDTVIVKKAGDIIPEVVNVLTDRRDGRERDFSM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR A NI+GLG++ 
Sbjct: 401 PTHCPECESELVRLEGE------VALRCINP-ECPAQIREGLIHFVSRQAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+ +     I   AD++ L R      +++  +   G+ SV NL  +I   +  SL
Sbjct: 454 IAQLFEHK----LIHTVADLYQLDR------SELLKLERMGEKSVDNLMKAIEASKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIR VG++ A++LA  + S     +           D  +L+ V  +G+ +A 
Sbjct: 504 EKLLFGLGIRFVGSKAAKTLAMEFESIDAIIEA----------DEAALVAVNEIGEKMAA 553

Query: 611 AIVEFYQNPRNICAVEALLKEVS------PSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           +IV F++       ++ L           P      +   S   NK +V TG L ++ R 
Sbjct: 554 SIVRFFETDEVKELIKRLQSYGVNTTYKGPKPVNGTEAAESPFANKTVVLTGKLYEMTRD 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +A+E +  LG  V+  +S+KTDI+I G++ GSK +KA++LG++I +E   L 
Sbjct: 614 EAKEKIETLGGKVTGSVSKKTDIVIAGEDAGSKKKKAEELGIEIWDEAALLK 665


>gi|145589636|ref|YP_001156233.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|190359270|sp|A4SYV5|DNLJ_POLSQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145048042|gb|ABP34669.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 671

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 273/715 (38%), Positives = 396/715 (55%), Gaps = 48/715 (6%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + + S        + L+ E++  +  YY    P++ D EYD L R    I  A P    S
Sbjct: 1   MSSNSPTNLADRYAFLQAELARLEHAYYVLDNPLLPDIEYDRLYRELLDIEAAHPQWVTS 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           E       ++GG        VTH++P LSL   +   +L  F  R       +    + +
Sbjct: 61  E---SLSQRVGGTALKEFDSVTHAVPMLSLNNAFEDSELIAFDRRCREALHVEH---VAY 114

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187
             E K DG  I++RYE G  V AA RGDG SGEDV+A I+ I  IP  L+    PEI+EV
Sbjct: 115 AGELKFDGLAISLRYENGTLVTAATRGDGASGEDVTANIKTIRAIPLKLTGKNIPEILEV 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-- 244
           RGEV++   DF  +N +   +G K +ANPRNAA+G LR+L+      R L+FF +GLG  
Sbjct: 175 RGEVFMYLKDFEKMNRQAAELGEKEFANPRNAAAGSLRQLDSKITAKRPLSFFAYGLGAL 234

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +      K   E+L     LG PV +  R  ++   I+++YNE+ + R +LPYDIDG+VY
Sbjct: 235 EPQSWLPKTHEELLNAYVELGLPVCSERRVLHSVEEILAFYNEIGAKRDSLPYDIDGVVY 294

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+ F+ Q +LG  +R+PR+ ++HK+  ++A T +L ID+Q+GRTG +TPVARL PV +G
Sbjct: 295 KVNSFAEQAKLGFVSRAPRFALAHKYPAQEALTTVLGIDVQVGRTGAITPVARLAPVEVG 354

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHNED +K            +D+R+GD V V+RAG+VIP+VV +I   R  D
Sbjct: 355 GVTVTNATLHNEDEVKR-----------KDVRIGDTVSVRRAGDVIPEVVSVIKERRPSD 403

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+ F  PS CP+C S + R  +       A  RC+GGL C AQ+ + L HF  R A +IE
Sbjct: 404 AKEFVMPSRCPVCDSHIERLADE------AVARCSGGLFCGAQRKQALIHFAHRRALDIE 457

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++ +D           +R PAD++ L        T + N+   G+ S  NL  +IN+
Sbjct: 458 GLGEKIVDQLVDQN----LVRTPADLYRL------GFTALANLERMGEKSADNLIQAINQ 507

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            RN +L RFIF+LGIRHVG   A+ LA +Y S                     L+ V  V
Sbjct: 508 SRNTTLARFIFALGIRHVGETTAKDLANHYQSMHALMDA----------SVEELLTVKDV 557

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G ++A +I  F Q   N   +E LL      +   EK +S+ +  K  V TGT   + R 
Sbjct: 558 GPVVADSITSFMQEAHNREVIEQLLASG-MQLSVEEKIISAAVFGKTFVLTGTFPTMTRD 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A++ + + GA V+  +S+KTD ++ G + GSKL KA++LGV +++EE+ L LL+
Sbjct: 617 EAKDLLEKAGAKVAGSVSKKTDYVVAGTDAGSKLAKAEELGVPVIDEEEMLNLLK 671


>gi|148658591|ref|YP_001278796.1| DNA ligase [Roseiflexus sp. RS-1]
 gi|166216236|sp|A5V1U3|DNLJ_ROSS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148570701|gb|ABQ92846.1| DNA ligase, NAD-dependent [Roseiflexus sp. RS-1]
          Length = 726

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 255/727 (35%), Positives = 386/727 (53%), Gaps = 62/727 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +   + + +L ++I YH+  YY   +P+I D+EYDAL R   A+  A P+L     P
Sbjct: 1   MNNDHLTRRVEALREQIRYHNYRYYVLDEPVISDAEYDALMRELRALEAAHPELV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G        KV H +P LSL    +  ++R +  R+ R     +D  + F +E
Sbjct: 58  DSPTQRVGAPPGEQFAKVQHVVPMLSLANASDEAEVRAWYDRVVRLLG--NDARVAFVVE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP----------------R 175
           PKIDG  +T+ Y  G  V  A RGDG +GEDV+A +R IP IP                 
Sbjct: 116 PKIDGLAVTLIYRNGILVRGATRGDGETGEDVTANLRTIPGIPLRLGAFASNPEGQTNGA 175

Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITR 234
            +   IP +IEVRGEVY+   DFL LN+++ A G K  ANPRNAA+G LR+ +P     R
Sbjct: 176 PVQAVIPPLIEVRGEVYMRIADFLRLNEQLAASGEKVAANPRNAAAGSLRQKDPAITARR 235

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            L FF +G+G+   +  + Q+E L  +R LGFPVN   R+       ++Y  E  + R  
Sbjct: 236 PLRFFAYGIGQIEGVQVQTQWETLNLLRTLGFPVNRDARRFERLDDALAYCREWMTRRDE 295

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L Y++DG+V K+D  + Q QLG   R PRW I+ KF  ++A +RL+DI + +GRTG++TP
Sbjct: 296 LEYEVDGVVIKIDSLAQQAQLGVVGRDPRWAIAFKFPAREAVSRLIDIVVNVGRTGVITP 355

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A +EPVNIGG  + NA+LHN DYI             RDIR+GD V+VKRAG+VIP +V
Sbjct: 356 NAVIEPVNIGGVTVRNASLHNADYI-----------AERDIRIGDYVIVKRAGDVIPYIV 404

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             IV  R    +P+  P+ CP C + + R           A+RC     C AQ   R++H
Sbjct: 405 GPIVARRDGSERPWQMPATCPACGTPLERAEGE------VAYRCPNFGICPAQITRRIEH 458

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           FVSR A +I G+G++Q+  F +       ++  AD++TL      +     N+ G+G   
Sbjct: 459 FVSRGAMDIAGIGEKQVQLFVER----GWVQDVADLYTL------TPDHFANVEGYGPKR 508

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
           V NL  +I   +N  L R I  LGIR+VG  +A+ LA ++           ++ A     
Sbjct: 509 VANLLSAIAGSKNRPLHRLIVGLGIRYVGEVVAQILADHFG----------SLDALAAAS 558

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKL 652
              +  +  +G  IA ++  ++  P +   +  L +    +  +     S  + +  K  
Sbjct: 559 ADEIDALEGIGPAIAASVAAYFARPESKALIAKLKRAGVRTEAQETARASRGNALAGKTF 618

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GSKLEKAQQLGVKIMNE 711
           V TGTL  + R +A   +T  G  VS  +S+KTD +++G  P G+K  KAQ+LG+ +++E
Sbjct: 619 VITGTLPSMSREEASALITAHGGKVSGSVSKKTDYLVIGAEPGGTKFAKAQELGIPMIDE 678

Query: 712 EQFLFLL 718
              L L+
Sbjct: 679 AGLLALI 685


>gi|160875869|ref|YP_001555185.1| DNA ligase, NAD-dependent [Shewanella baltica OS195]
 gi|190359285|sp|A9L5Z1|DNLJ_SHEB9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160861391|gb|ABX49925.1| DNA ligase, NAD-dependent [Shewanella baltica OS195]
 gi|315268060|gb|ADT94913.1| DNA ligase, NAD-dependent [Shewanella baltica OS678]
          Length = 685

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 246/710 (34%), Positives = 380/710 (53%), Gaps = 51/710 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ E A + + +L Q ++ H+  YY    P I DSEYD L +R   +   +P L  + 
Sbjct: 12  EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVA- 70

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F 
Sbjct: 71  --DSPTQRVGGLALAKFDQITHLKPMLSLDNAFDEADFSAFHKRVTDKVG-----EVSFC 123

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVR
Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVR 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE ++ K  F ALND   A   K + NPRNAA+G LR+L+      R L F+ + LG   
Sbjct: 184 GEAFMPKAAFEALNDRARAKDEKLFVNPRNAAAGSLRQLDSKITAARSLAFYAYALGVVE 243

Query: 248 ---EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                 AK  +E LQ+++  G P+++ ++       +  YY ++ + RS L ++IDG+V 
Sbjct: 244 PDSHPLAKTHFEQLQQLKSWGLPISSEIKVCAELSQVYDYYKDILTRRSDLAFEIDGVVM 303

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++ + Q++LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +G
Sbjct: 304 KVNDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 363

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D I  L            I+VGD V+++RAG+VIP++V I+   R   
Sbjct: 364 GVTVSNATLHNADEIARL-----------GIKVGDTVIIRRAGDVIPQIVAIVPERRPET 412

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A    FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+
Sbjct: 413 ATDIVFPHNCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDID 466

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + ++     E     ++ PAD+F L        + +  +   G  S TNL  +I  
Sbjct: 467 GMGDKVVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGMKSATNLAAAIEA 516

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+++LGIR VG   A +LA ++ S                     L  V  V
Sbjct: 517 AKTTTLARFLYALGIREVGEATAANLAAHFASLDALRVAT----------VEQLTEVEDV 566

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQR 663
           G ++AQ +  F+  P N+  ++AL+            +     ++ +  V TGTL ++ R
Sbjct: 567 GAVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSADAQPLKGQTWVLTGTLNQLNR 626

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           + A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+M+E++
Sbjct: 627 NDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDEDE 676


>gi|304411949|ref|ZP_07393560.1| DNA ligase, NAD-dependent [Shewanella baltica OS183]
 gi|307303283|ref|ZP_07583038.1| DNA ligase, NAD-dependent [Shewanella baltica BA175]
 gi|304349809|gb|EFM14216.1| DNA ligase, NAD-dependent [Shewanella baltica OS183]
 gi|306913643|gb|EFN44065.1| DNA ligase, NAD-dependent [Shewanella baltica BA175]
          Length = 685

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/710 (34%), Positives = 377/710 (53%), Gaps = 51/710 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ E A + + +L Q ++ H+  YY    P I DSEYD L +R   +   +P L  + 
Sbjct: 12  EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVA- 70

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F 
Sbjct: 71  --DSPTQRVGGLALAKFDQITHPKPMLSLDNAFDEADFSAFHKRVTDKVG-----EVSFC 123

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVR
Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVR 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE ++ K  F ALND   A   K + NPRNAA+G LR+L+      R L F+ + LG   
Sbjct: 184 GEAFMPKAAFEALNDRARAKDEKLFVNPRNAAAGSLRQLDSKITAARSLAFYAYALGVVE 243

Query: 248 ---EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                 AK  +E LQ+++  G PV++ ++       +  YY ++ + R  L ++IDG+V 
Sbjct: 244 PDSHPLAKTHFEQLQQLKSWGLPVSSEIKVCAELSQVYDYYKDILTRRGDLAFEIDGVVM 303

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++   Q++LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +G
Sbjct: 304 KVNDIDQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 363

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D I  L            I+VGD V+++RAG+VIP++V I+   R   
Sbjct: 364 GVTVSNATLHNADEIARL-----------GIKVGDTVIIRRAGDVIPQIVAIVPERRPET 412

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A    FP  CP+C S V R             RC+GGL C AQ+ E +KHF SR A +I+
Sbjct: 413 ATDIVFPHNCPVCGSLVERLEGE------VVARCSGGLFCEAQRKEAIKHFASRKALDID 466

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + ++     E     ++ PAD+F L        + +  +   G  S TNL  +I  
Sbjct: 467 GMGDKVVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGMKSATNLAAAIEA 516

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+++LGIR VG   A +LA ++ S                     L  V  V
Sbjct: 517 AKTTTLARFLYALGIREVGEATAANLAAHFASLDALRVAT----------VEQLTEVEDV 566

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQR 663
           G ++AQ +  F+  P N+  ++AL+            +     ++ +  V TGTL ++ R
Sbjct: 567 GTVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSAEAQPLKGQTWVLTGTLNQLNR 626

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           + A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+M+E++
Sbjct: 627 NDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDEDE 676


>gi|33594429|ref|NP_882073.1| DNA ligase [Bordetella pertussis Tohama I]
 gi|81424006|sp|Q7VRX7|DNLJ_BORPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33564504|emb|CAE43819.1| DNA ligase [Bordetella pertussis Tohama I]
 gi|332383840|gb|AEE68687.1| DNA ligase [Bordetella pertussis CS]
          Length = 696

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 257/728 (35%), Positives = 390/728 (53%), Gaps = 69/728 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ ++ L  EI  H+  YY +  P + D+EYDAL R   A+    P+L     P+ P  +
Sbjct: 9   QQAIARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELV---TPDSPTQR 65

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFFTLEPK 133
           +G         V H++P LSL   ++ ED+R F  R+    +       D  + +  E K
Sbjct: 66  VGAAPLAEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEYFCELK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I++RYE+G+   AA RGDG +GEDV+A IR I  +P  L      ++EVRGEV +
Sbjct: 126 LDGLAISLRYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLHGAPR-VLEVRGEVLM 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
           ++ +F  LN    A G K + NPRNAA+G LR+L+P     R L FF +  G+   +   
Sbjct: 185 NRAEFERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLPEG 244

Query: 253 G---------------------QYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKS 290
                                    ML  +  LG PVN     +     G++++Y  +  
Sbjct: 245 MPTRFDEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYERIGK 304

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
           +R+ LPYDIDG+VYKVD    Q+ LG  AR+PR+ ++HKF  ++A T+LL I++Q+GRTG
Sbjct: 305 LRADLPYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQVGRTG 364

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TPVARL PV +GG  +TNATLHNED I+            +D+R+GD V+V+RAG+VI
Sbjct: 365 AITPVARLAPVFVGGVTVTNATLHNEDEIRR-----------KDVRIGDTVIVRRAGDVI 413

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P+VV  ++ +R  DA+ F   + CPIC S + R  +       A  RCTGGL C+AQ+ +
Sbjct: 414 PEVVGPVLEKRPADAREFVMLTACPICGSAIERPESE------AIARCTGGLFCAAQRKQ 467

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
            L H   R A +IEGLG++ +D    ++     ++  ADI++L         ++  +   
Sbjct: 468 TLLHAAGRKALDIEGLGEKLIDQLVDADR----VKSLADIYSLTA------FELAALERM 517

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
           G  S  NL  +I++ R  +L R +F+LGIRHVG   AR +A+++ S +            
Sbjct: 518 GKKSAENLVAAIDQARRPALGRLLFALGIRHVGETTARDVARHFGSMERIMDASE----- 572

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
                 +L+ VP VG ++A +I  F+  P N   VE L ++        E   +S +  K
Sbjct: 573 -----EALLAVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQGVHPQAEAEPEGTS-LAGK 626

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             V TGT+    R +A   +   G  VS  +S+KT  ++ G++ GSKL KAQ+LGV +++
Sbjct: 627 TFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYLVTGEDAGSKLTKAQELGVPVLD 686

Query: 711 EEQFLFLL 718
           E+    LL
Sbjct: 687 EDGLKALL 694


>gi|258510685|ref|YP_003184119.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477411|gb|ACV57730.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 684

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 241/722 (33%), Positives = 369/722 (51%), Gaps = 56/722 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
            ALS+E+AR     L ++I YH+  YY    P I D+E+DAL R    +   +P+L    
Sbjct: 8   SALSLEEARARAKVLREQIEYHNRKYYLEDNPEISDAEWDALMRDLIELERKYPELV--- 64

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
           DP  P  ++G        KV H +P LSL   ++ EDL  +  R+ +       + + + 
Sbjct: 65  DPASPTQRVGAPALEGFAKVVHEVPMLSLANAYSTEDLLDWDRRVRQAVG----DDVRYV 120

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E K+DG  + +RY+ G+ V  A RGDG  GED++A IR I  +P  LS  +   +EVRG
Sbjct: 121 CELKVDGLAVALRYQDGRLVLGATRGDGSVGEDITANIRTIRNVPLELSEPVS--LEVRG 178

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248
           E Y+ K +F+ LN+     G   +ANPRNAA+G LR+L+P    +R L   V+ L +   
Sbjct: 179 EAYMPKREFMRLNELREQQGEPLFANPRNAAAGSLRQLDPAVAASRRLGVIVYQLVRAEA 238

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              +   + L  +  LG P +           +++Y       R  LPY  DG+V KVD 
Sbjct: 239 HGCETHSQALDYVARLGLPAHRERHVCANIEDVIAYIEAWADKRHELPYATDGMVVKVDS 298

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ +LG  A+SPRW I++K+A +QA T L  I++ +GRTG++TP A  +PV + G  +
Sbjct: 299 LALQARLGATAKSPRWAIAYKYAAEQAETTLRAIELNVGRTGVVTPTAVFDPVQLAGTTV 358

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHNED ++            +DIRVGD ++V++AG++IP+V+  +   R      F
Sbjct: 359 SRASLHNEDLVR-----------EKDIRVGDVIVVQKAGDIIPEVIRSLPERRTEPLPEF 407

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C SR+VR           A RC     C A   E L HF SRDA NIEGLG+
Sbjct: 408 RMPETCPQCGSRLVRLDGE------VAWRCINP-DCPALLREGLIHFCSRDAMNIEGLGE 460

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           Q +            +R  AD++ L++           +   GD     L  +I + +  
Sbjct: 461 QWITVLLDR----GLVRTHADLYRLRKADLV------QLDRMGDKLADKLLHNIQESKRN 510

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SLER +F LGIRHVG + A++LA+++++                     L+ VP +G  +
Sbjct: 511 SLERLLFGLGIRHVGEKAAKTLAEHFVTIDALMSASE----------EDLMAVPDIGPKV 560

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           AQ+I +++  PR    ++ L            +K     +  K +V TG LQ   R +A 
Sbjct: 561 AQSIRQYFDTPRVRQLIQELKDLGVNMTYLGPQKVSDGPLAGKTVVLTGVLQAADRKQAT 620

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-------GVKIMNEEQFLFLLQQ 720
            ++ Q+G  V++ +S KTD++I GD  GSKL KAQ++        ++I +E  FL L+ +
Sbjct: 621 AWIEQMGGKVASSVSAKTDVLIAGDKAGSKLAKAQEILRNHPDAKLEIWDEAAFLRLVDE 680

Query: 721 YN 722
             
Sbjct: 681 AG 682


>gi|192361192|ref|YP_001982383.1| DNA ligase, NAD-dependent [Cellvibrio japonicus Ueda107]
 gi|254781281|sp|B3PGQ8|DNLJ_CELJU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190687357|gb|ACE85035.1| DNA ligase, NAD-dependent [Cellvibrio japonicus Ueda107]
          Length = 680

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 243/719 (33%), Positives = 386/719 (53%), Gaps = 47/719 (6%)

Query: 9   IEALSI-EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           +  LS+ +    E++ L ++I YH+  YY   +P I D+EYD L +R   +   +P    
Sbjct: 1   MSNLSLFDDVSAEIAQLREQIRYHNYRYYALDEPQIPDAEYDRLMQRLRELEAQYP---A 57

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           S  P+ P  ++G     +   V H IP LSL+  +   D+  F  RI    +  ++  I 
Sbjct: 58  SVTPDSPTQRVGAAPLSAFQTVEHQIPMLSLDNAFEEADVIAFNQRILDRLKSTEN--IE 115

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           +  E K+DG  +++ Y  G  V  A RGDG  GED++  +R I ++P  L     P ++E
Sbjct: 116 YACELKLDGLAVSLLYRDGVLVRGATRGDGSKGEDITQNLRTIASVPLKLLGEGYPAVLE 175

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           VRGEVY+ K  F ALN++  + G K + NPRNAA+G LR+L+     +R L    + +G 
Sbjct: 176 VRGEVYMPKAGFNALNEKARSTGEKLFVNPRNAAAGALRQLDSRITASRPLEMCAYSVGL 235

Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                       +L  ++  GF  N     A+T    +++Y  +++ R +L YDIDG+V+
Sbjct: 236 VEGGELPGTHTGILAALKSWGFLTNKETATASTIADCIAFYQSIQARRDSLAYDIDGIVF 295

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+   LQ+ LG  +R+PRW I++KF  ++  T L D++ Q+GRTG +TPVARL+PV +G
Sbjct: 296 KVNARELQESLGFISRAPRWAIAYKFPAQEEMTVLQDVEFQVGRTGAVTPVARLQPVFVG 355

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D I+ L            I +GD V+V+RAG+VIP++V ++ + R  D
Sbjct: 356 GVTVSNATLHNRDEIQRL-----------GIMIGDTVIVRRAGDVIPQIVQVVESRRPTD 404

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+P  FP  CP+C S V    +       A  RC+GGL C+AQ+ E +KHF SR A ++E
Sbjct: 405 ARPVLFPDHCPVCGSPVETLEDE------AIARCSGGLVCAAQRKEAIKHFASRKALDVE 458

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG + ++    +      +   ADI+ L   Q  +          G+ S  NL  ++  
Sbjct: 459 GLGDKLVEQLVDT----GLVSKLADIYQLTGEQLAAM------ERMGEKSADNLLQALEA 508

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            ++ +L +FI++LGIR +G   AR+LA ++ S +  A+           D  +L++V  V
Sbjct: 509 SKHTTLAKFIYALGIREIGEATARNLANHFGSLEKLAEA----------DEETLVQVNDV 558

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQR 663
           G + A  + EF+    N  AV  L              +    ++    V TGTL+ + R
Sbjct: 559 GPVGAHFVAEFFAQESNRQAVADLRAAGIHWQDLDVSTIEDLPLKGLTYVLTGTLEVMSR 618

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             A+ ++  LGA V+  +S KTD ++ G   GSKL+KA++L + +M+EE  L LL+++ 
Sbjct: 619 DDAKAHLLALGAKVAGSVSAKTDYVVAGPGAGSKLQKARELNLNVMDEEALLDLLRKHG 677


>gi|297717812|gb|ADI50049.1| DNA ligase [Candidatus Odyssella thessalonicensis L13]
          Length = 676

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 273/698 (39%), Positives = 410/698 (58%), Gaps = 26/698 (3%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L + I+YHD+ Y+Q   P I D+ YDAL  R   I + FPDL R    + P  ++G  ++
Sbjct: 1   LAKTIAYHDELYFQKDMPQISDAAYDALVVRNRQIENLFPDLRRE---DSPSKRVGAPVS 57

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               KV H IP LSLE  +  +D+  F  R+ RF     D       EPKIDG    + Y
Sbjct: 58  KGFKKVKHRIPMLSLENAFTSDDVINFFERVRRFLSLPSDQEFPIVAEPKIDGLSAALHY 117

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALN 202
           ++GK   AA RGDG  GED++  +R I  +P+ L     PE +EVRGE+Y++++DF ALN
Sbjct: 118 QRGKLRLAATRGDGSEGEDITENVRCIIDVPQTLIGKNVPESLEVRGEIYMNRSDFFALN 177

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
            +        +ANPRNAA+G +R+L+PT    R L FF +     S       +E L+ +
Sbjct: 178 QQRQQESEPEFANPRNAAAGSVRQLDPTVTARRPLRFFAYYYDAISGDTTMTHHEALENL 237

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           R  GF VN  ++   +   +  YYN + + R+ LPYDIDG+VYK+D    Q++LG   R+
Sbjct: 238 RRWGFTVNPEIQLCLSIAQLQDYYNSINARRADLPYDIDGVVYKIDALQWQRRLGSVGRT 297

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PR+ ++HKF  ++A T L DI IQ+GRTG+LTPVA L+PV +GG +++ ATLHN D I  
Sbjct: 298 PRYALAHKFEAEKAETILEDIAIQVGRTGVLTPVAHLKPVTVGGVVVSRATLHNADEIAR 357

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +D+RVGD V+++RAG+VIP++V ++  +R P++Q F FP+ CP C   +
Sbjct: 358 -----------KDVRVGDHVIIQRAGDVIPQIVSVVKEKRLPESQSFDFPATCPACGGEI 406

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           V            A RC   L C AQ +ERLKHFVSRDAF+IEGLG + ++ F++     
Sbjct: 407 VYVPGE------VARRCMNRLLCPAQAVERLKHFVSRDAFDIEGLGNRNIEAFYEE---- 456

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             I  P DIFTL  R + S T +    G+G  S  NL+++I  RR I+L+RFI++LGI  
Sbjct: 457 GLIHSPVDIFTLAARDRESLTPLRAKEGWGSQSAANLFEAIENRRTITLDRFIYALGIPQ 516

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG+  A+ LA++Y +  N    +        D ++ L+ +  +G  +A+ I+ F+    N
Sbjct: 517 VGSVTAKLLARHYHTLPNLLNTLQQAQDPTTDAYVDLLSLDGIGKNMAEDILSFFHEAHN 576

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           +  ++AL  E+S      E + +S +  K +VFTGTL ++ R +A+    +LGA V+  +
Sbjct: 577 LKVIDALSHELSIPAYALEMSTTSAVSGKTVVFTGTLTRMSRAEAKATAERLGAKVAGSV 636

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           S+KTD++IVG + GSK   A +LGV++++E Q++ L+ 
Sbjct: 637 SKKTDLVIVGADAGSKARAAAELGVQVLDENQWMALIA 674


>gi|89097084|ref|ZP_01169975.1| DNA ligase [Bacillus sp. NRRL B-14911]
 gi|89088464|gb|EAR67574.1| DNA ligase [Bacillus sp. NRRL B-14911]
          Length = 668

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 249/714 (34%), Positives = 378/714 (52%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + ++ A   +  L   ++ +   YY   KP + DSEYD L +    + +  P L  +   
Sbjct: 1   MDLQNAEARVKELHNLLNQYGYEYYVLDKPSVPDSEYDRLLKELMELENEHPQLKTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE+     KV H  P LSL   +N EDLR F  R+     +    ++ +  E
Sbjct: 58  DSPTQRVGGEILDMFEKVEHQTPMLSLGNAFNEEDLRSFDRRVR----QTAGENLSYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + ++YE G F+  A RGDG  GED++  +R I +IP  LS  +   IEVRGE 
Sbjct: 114 LKIDGLAVALKYEDGLFIQGATRGDGTIGEDITVNLRTIRSIPLRLSEPVS--IEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           ++    F ALN      G +P+ANPRNAA+G LR+L+P    +R L+ F++G+  T +  
Sbjct: 172 FMPGRSFEALNKGKEERGEEPFANPRNAAAGSLRQLDPRIAASRNLDIFLYGISNTGDTG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +     L  +  LGF  N   R+  +   ++ Y +     R  L YDIDG+V KVD  +
Sbjct: 232 VESHSAGLDYLETLGFKTNKERRKCASIEEVIEYVSSWTEKRPNLDYDIDGIVIKVDSLA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  A+SPRW I++KF  ++  T L DI++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 LQEELGATAKSPRWAIAYKFPAEEVVTTLRDIELSVGRTGVVTPTALLEPVRVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DI++GD+V+VK+AG++IP+VV+++  +R  + + F  
Sbjct: 352 ASLHNEDLIR-----------EKDIKIGDKVVVKKAGDIIPEVVNVLAEQRTGEEREFIM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTHCPECGSELVRLEGE------VALRCINPK-CPAQIREGLIHFVSRNAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F  E     I+  AD++ L                 G+ SV NL  +I   +  SL
Sbjct: 454 VSQLFAKE----LIKDVADLYKLTHEALIGM------ERMGEKSVNNLVQAIEASKQNSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIRHVGA+ A++LA+++ S  N                  L  +  +G  +A 
Sbjct: 504 EKLLFGLGIRHVGAKAAKTLAQHFSSMDNLMAASE----------DDLTAINEIGGKMAG 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           AIV F++       +  L +       +       ++  S    K +V TG L  + R++
Sbjct: 554 AIVAFFEQEEAKELIRELKESGVNMEYKGPKPVAAEDSDSFFAGKTIVLTGKLSILSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +  LG  VS  +S+KTD++I G++ GSKL KAQ LG+ I NEEQ +  L 
Sbjct: 614 AKEKIEALGGNVSGSVSKKTDLLIAGEDAGSKLAKAQDLGIDIWNEEQLVEELN 667


>gi|153001196|ref|YP_001366877.1| DNA ligase, NAD-dependent [Shewanella baltica OS185]
 gi|166216241|sp|A6WPS5|DNLJ_SHEB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|151365814|gb|ABS08814.1| DNA ligase, NAD-dependent [Shewanella baltica OS185]
          Length = 685

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 246/710 (34%), Positives = 379/710 (53%), Gaps = 51/710 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ E A + + +L Q ++ H+  YY    P I DSEYD L +R   +   +P L  + 
Sbjct: 12  EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVA- 70

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F 
Sbjct: 71  --DSPTQRVGGLALAKFDQITHLKPMLSLDNAFDEADFSAFHKRVTDKVG-----EVSFC 123

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVR
Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVR 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE ++ K  F ALND   A   K + NPRNAA+G LR+L+      R L F+ + LG   
Sbjct: 184 GEAFMPKAAFEALNDRARAKDEKLFVNPRNAAAGSLRQLDSKITAARSLAFYAYALGVVE 243

Query: 248 ---EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                 AK  +E LQ+++  G P+++ ++       +  YY  + + RS L ++IDG+V 
Sbjct: 244 PDSHPLAKTHFEQLQQLKSWGLPISSEIKVCAELSQVYDYYKNILTRRSDLAFEIDGVVM 303

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++ + Q++LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +G
Sbjct: 304 KVNDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 363

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D I  L            I+VGD V+++RAG+VIP++V I+   R   
Sbjct: 364 GVTVSNATLHNADEIARL-----------GIKVGDTVIIRRAGDVIPQIVAIVPERRPET 412

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A    FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+
Sbjct: 413 ATDIVFPHNCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDID 466

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + ++     E     ++ PAD+F L        + +  +   G  S TNL  +I  
Sbjct: 467 GMGDKVVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGMKSATNLAAAIEA 516

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+++LGIR VG   A +LA ++ S                     L  V  V
Sbjct: 517 AKTTTLARFLYALGIREVGEATAANLAAHFASLDALRVAT----------VEQLTEVEDV 566

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQR 663
           G ++AQ +  F+  P N+  ++AL+            +     ++ +  V TGTL ++ R
Sbjct: 567 GAVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSADAQPLKGQTWVLTGTLNQLNR 626

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           + A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+M+E++
Sbjct: 627 NDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDEDE 676


>gi|169831769|ref|YP_001717751.1| NAD-dependent DNA ligase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|254781311|sp|B1I551|DNLJ_DESAP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169638613|gb|ACA60119.1| DNA ligase, NAD-dependent [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 672

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 250/710 (35%), Positives = 361/710 (50%), Gaps = 47/710 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E+AR     L +EI YHD  YY    P+I D+EYD L R   A+  A+P+L     P
Sbjct: 1   MKPEEARARAEELRREIEYHDHRYYVLDDPVIEDAEYDRLVRELVALETAYPELV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG        V H  P LSL   +N  DL  F  R+        D  + + +E
Sbjct: 58  DSPTQRVGGRPREGFVTVQHRAPMLSLANAFNAADLADFDRRVRTGL---ADEDVDYVVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190
            K DG  +++ YE G+ V  A RGDG +GE+++  +R I +IP  L     P +IEVRGE
Sbjct: 115 LKFDGVAVSLTYEHGRLVRGATRGDGVTGEEITPNLRTIRSIPLRLRQPGAPNVIEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249
           VY+ K  F  LN+     G   +ANPRNAA+G LR+L+P     R L+ +++G+G T  I
Sbjct: 175 VYMPKEAFARLNERREDAGLPLFANPRNAAAGSLRQLDPGITAERKLDIWLYGIGYTDGI 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +   GF VN   R  +T   +  +    +  R  LPY IDGLV KVD  
Sbjct: 235 VFGRHSEALAWLGEQGFRVNPHTRIFSTLEEVERHLEHWREARFELPYVIDGLVLKVDRL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q++LG   +SPRW +++K+  +QA T + DI I++GRTG+LTP A L PV + G  ++
Sbjct: 295 DQQERLGTTLKSPRWAVAYKYPPEQAETTVEDIIIRVGRTGVLTPTAVLSPVRLAGTTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +DIR+GD VL+ +AG++IP+++     +R     PF+
Sbjct: 355 RASLHNEDLIR-----------EKDIRIGDVVLIHKAGDIIPEILGSRPEKRTGRETPFA 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C S +VR                  +AC A+    L HFVSR+AF I GLG  
Sbjct: 404 MPVQCPECASLLVRPEGEVG-------VYCSNVACPARLERSLLHFVSRNAFAINGLGPA 456

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +    +       +  PAD+FTL R +         +   G  S  NL  +I   +  S
Sbjct: 457 VIQQLLERR----LVADPADLFTLTREELVG------LERIGPKSADNLLKAIQNSKRNS 506

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R IFSLGIRHVG   AR LA+ + S                     L  VP +G  IA
Sbjct: 507 LARLIFSLGIRHVGERAARLLAERFGSLAGLMAAGR----------EELEAVPEIGPKIA 556

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQE 668
            +++ F+   +N   V  L++    ++           +  K  V TGTL++  R +A  
Sbjct: 557 DSVLNFFAREQNRRVVAKLVRAGVNTVADRPAAAGTGPLAGKTFVLTGTLEEFSRAEAAA 616

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + +LG  V + +SR+TD +++G NPG K +KA +LGV I+ E +F  LL
Sbjct: 617 RIEELGGRVVSNVSRRTDYVVLGKNPGGKYDKAVKLGVNIIEEPEFKRLL 666


>gi|311104688|ref|YP_003977541.1| DNA ligase, NAD-dependent [Achromobacter xylosoxidans A8]
 gi|310759377|gb|ADP14826.1| DNA ligase, NAD-dependent [Achromobacter xylosoxidans A8]
          Length = 702

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 258/723 (35%), Positives = 385/723 (53%), Gaps = 68/723 (9%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           EI  H+  YY Y +P I D+EYD L R   A+    P+L     P  P  ++G     + 
Sbjct: 20  EIEQHNVRYYVYDEPSISDAEYDGLMRELQALEAEHPELV---TPESPTQRVGAAPVSAF 76

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ----KKDDNSIFFTLEPKIDGTMITIR 142
             V H +P LSL   ++ ED+  F  R+    +            +  E K+DG  I++R
Sbjct: 77  GSVRHVVPMLSLGNAFDEEDVAAFDRRVTDTLRGAGLLGPAQQADYFCELKLDGLAISLR 136

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           YE G+ V AA RGDG +GEDV++ IR I  IP  L    P+++EVRGEV +++ DF  LN
Sbjct: 137 YEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLKGTFPKVLEVRGEVLMNRADFEKLN 196

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-------------- 247
                   K + NPRNAA+G LR+L+P     R L FF +G G+                
Sbjct: 197 QAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEVQGLAGTQGGLFAEAS 256

Query: 248 -------EIFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
                  ++  K    ML  +  LG P       +A+   G++++Y ++  +R  LPYDI
Sbjct: 257 AGAAEASQLPEKSHGAMLDWLASLGLPVNVKHNHRASGAEGLMAFYAKVGKLRPELPYDI 316

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD    QK LG  AR+PR+ ++HKFA ++A+T LLDI++Q+GRTG +TPVARL+
Sbjct: 317 DGVVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEATTTLLDIEVQVGRTGAITPVARLK 376

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG  +TNATLHNED I+            +D+R+GD V+V+RAG+VIP+V+  ++ 
Sbjct: 377 PVFVGGVTVTNATLHNEDEIRR-----------KDVRIGDTVIVRRAGDVIPEVLGPVLE 425

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  DA+ F  P+ CPIC S + R  +          RCTGGL C AQ+ + L H  SR 
Sbjct: 426 KRPDDAREFVMPTACPICGSAIERLEDET------IARCTGGLFCGAQRKQTLWHAASRK 479

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG++ +D    S      ++  AD+++L+        ++  +   G  S  NL 
Sbjct: 480 ALDIEGLGEKLVDQLVDS----GRVKTLADLYSLR------PLELVGLDRMGQKSADNLV 529

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I+K R  +L R +++LGIRHVG   AR +A+++ S                 D  +L 
Sbjct: 530 AAIDKARAPALNRLLYALGIRHVGETTARDVARHFGSIDAIMDA----------DEDALS 579

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            VP VG ++A +I  F+    N   +E L  +    +       ++ +  K  V TGTL 
Sbjct: 580 SVPDVGPVVAASIRRFFAEQHNRDVIEQLKAQGVNPVAE-AAPQATTLAGKTFVLTGTLP 638

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R +A   +   G  VS  +S+KT  ++ G++ GSKL KAQ+LGV +++E+    LL 
Sbjct: 639 NWTREEASMRIQAAGGKVSGSVSKKTAYLVAGEDSGSKLAKAQELGVTVLDEDGLKTLLG 698

Query: 720 QYN 722
           +  
Sbjct: 699 EQG 701


>gi|86138407|ref|ZP_01056981.1| DNA ligase, NAD-dependent [Roseobacter sp. MED193]
 gi|85824932|gb|EAQ45133.1| DNA ligase, NAD-dependent [Roseobacter sp. MED193]
          Length = 752

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 299/764 (39%), Positives = 440/764 (57%), Gaps = 59/764 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           MK+ + +    LS EQA+ E   L+ +++  D  Y+Q   P + D+ YDA KRR   +A 
Sbjct: 1   MKQIEPLDPSGLSQEQAQAEFLELQTQLAAADQAYHQNDAPFLSDAAYDAAKRRYKVLAE 60

Query: 61  AFPDLARSEDP-NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
           AFP+L       +     +G  +     K+ H +P LSL   +   D+  F   I  +  
Sbjct: 61  AFPELKDIATQLDS----VGAPVTSGFGKIQHVVPMLSLGNAFEDSDVADFDRSIRNYLG 116

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
                 + FT EPKIDG  +++RYEKG  + AA RGDG +GE+V+A  R I  IP+ LS 
Sbjct: 117 FGASQPLRFTAEPKIDGLSLSLRYEKGVLIQAATRGDGATGENVTANARTIADIPQQLSG 176

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
             PE++EVRGEVY+S  DF ALN      G K +ANPRNAA+G LR+L+      R L F
Sbjct: 177 A-PEVLEVRGEVYMSHEDFAALNARHTERGGKTFANPRNAAAGSLRQLDAEITRLRPLRF 235

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F +  G  S   A+ Q   ++++  LGF  N   +   +   ++++Y ++++ R+TL YD
Sbjct: 236 FAYSWGDLSAPLAQTQTGAIERLHELGFQTNPLTQTCASVAEMIAHYRQIEAQRATLGYD 295

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD+ +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL
Sbjct: 296 IDGVVYKVDDLALQGRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARL 355

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV +GG +++NATLHNEDYI+G D  G+ +RGG++IR+GD V V RAG+VIPKV D+ +
Sbjct: 356 TPVTVGGVVVSNATLHNEDYIRGRDNKGEEIRGGKEIRIGDWVQVYRAGDVIPKVADVDL 415

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            +R+ D Q F FP  CP C S  VR+         A  RCTGG+ C AQ +E+LKHFVSR
Sbjct: 416 TKRNGDEQTFDFPETCPECGSPAVREEG------DAVRRCTGGIICPAQAIEKLKHFVSR 469

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            AF+IEGLG +QL+ F+   DP   IR P DI+TL++R     TK++N  G+GD S  NL
Sbjct: 470 KAFDIEGLGAKQLEMFYN--DPDLPIRTPVDIYTLEQRDLGQFTKLKNRPGWGDQSAANL 527

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH-------- 590
           + +I ++RNISL R IF+LGIRHVG   A+ LA ++ S+++ A  ++   +         
Sbjct: 528 FAAITEKRNISLGRMIFALGIRHVGEVAAKDLALHFGSWEDLASAVDAARSAALAHRAAD 587

Query: 591 -----------------------------------NNDDWLSLIRVPLVGDIIAQAIVEF 615
                                                + W  LI +  +G  +  ++ + 
Sbjct: 588 LAEDQERERASSEGRRAKIKETREAALSVLELHRTAREAWEDLIGIDGIGATVGLSLSDA 647

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
             N +    ++ L+ +++ S      +  S +    +VFTG L+K+ R +A+     LGA
Sbjct: 648 LANMQERAVIDDLVAQLNIS-APAAPSQESPVAGLTVVFTGKLEKMTRDEAKARAESLGA 706

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            VS  +S+KTDI++ G   GSK +KA +LG++I++E+ +L  + 
Sbjct: 707 KVSGSVSKKTDILVAGPGAGSKEKKALELGIRILDEDGWLAEIA 750


>gi|149192011|ref|ZP_01870239.1| NAD-dependent DNA ligase LigA [Vibrio shilonii AK1]
 gi|148834147|gb|EDL51156.1| NAD-dependent DNA ligase LigA [Vibrio shilonii AK1]
          Length = 667

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 253/706 (35%), Positives = 392/706 (55%), Gaps = 47/706 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ L+ L++++ YH   YY    P I D EYD L +   AI    PD       + P  +
Sbjct: 3   QQRLNELKEQLHYHGVKYYVEDSPEIPDVEYDRLMQELLAIEAEHPDWVTV---DSPSQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG    S  +V H IP LSL+  ++ EDL  F  RI     + D  +  +  E K+DG 
Sbjct: 60  VGGLPLDSFTQVKHEIPMLSLDNAFSDEDLDSFNKRICDRVNRTDIGA--YCCEVKLDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKN 196
            +++ YE G  V AA RGDG +GE+++  +R I  IP  L  +  P  IEVRGEV++ K 
Sbjct: 118 AVSLLYESGVLVQAATRGDGTTGENITENVRTISAIPLKLQGDDIPARIEVRGEVFMPKA 177

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS-EIFAKGQ 254
            F  LN+     G K + NPRNAA+G LR+L+     TR L+F+ + LG           
Sbjct: 178 GFAKLNELAERKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSLGIVEGTELPASH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           ++   K++ LGFP+    ++ N+   + +Y+  ++  R  L Y+IDG+V KVD+ +LQ+Q
Sbjct: 238 FDRFLKLKSLGFPMGPETKRVNSIEEVKAYHKAIQEKRDELEYEIDGVVIKVDDIALQEQ 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  AR+PRW I++KF  ++  T L  ++ Q+GRTG +TPVA+LEPV +GG  ++NATLH
Sbjct: 298 LGFVARAPRWAIAYKFPAQEEITVLNSVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            ++VGD V+++RAG+VIP++V  +   R  DA+   FPS C
Sbjct: 358 NADEIERL-----------GVKVGDSVIIRRAGDVIPQIVSYVPERRPADAKEIVFPSEC 406

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S + R          A  RCTGGL C AQ+ E LKHFVSR A +++GLG++ ++  
Sbjct: 407 PVCASLIERIEGE------AVARCTGGLVCQAQRKEALKHFVSRKALDVDGLGEKVIEQL 460

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     +  PAD+F L      S  ++  +   G  S  N+ +++N  +  +L RF+
Sbjct: 461 VDKE----MVETPADLFKL------SVGQLTILERMGPKSAQNVVNALNVSKETTLARFL 510

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           +SLGIR VG   A +L+ ++ + +N     +            LI VP VG+I+A+ I  
Sbjct: 511 YSLGIREVGEATAANLSTHFETLENVMNATH----------DQLIEVPDVGEIVAKHIRF 560

Query: 615 FYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           F+    N   +EAL+       ++    ++    +  K +V TG+L ++ R+ A+  +  
Sbjct: 561 FFAAESNQKVIEALIAAGIHWAAVEAPAEDTPQPLAGKTVVLTGSLSQLNRNDAKAALQA 620

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           LGA V+  +S+KTDI+  G+N GSKL KAQ+L ++I  E+  + L+
Sbjct: 621 LGAKVTGSVSKKTDILFAGENAGSKLAKAQELNIEIRTEDDLIELI 666


>gi|77919807|ref|YP_357622.1| DNA ligase, NAD-dependent [Pelobacter carbinolicus DSM 2380]
 gi|123756590|sp|Q3A2F5|DNLJ_PELCD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|77545890|gb|ABA89452.1| DNA ligase, NAD-dependent [Pelobacter carbinolicus DSM 2380]
          Length = 671

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 243/710 (34%), Positives = 369/710 (51%), Gaps = 46/710 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   Q  +    L  E+  H   YY Y +P I D+EYD L R    +  A+P+L  +   
Sbjct: 1   MDKAQRIRRYQQLCDELHRHSRLYYTYDRPEITDAEYDRLFRELLELEKAYPELVTAA-- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++G         V HS P LSLE     ++L  F  RI +      D  + +  E
Sbjct: 59  -SPSLRVGASPLSQFTPVPHSRPMLSLENALTEDELYDFDARIRKLL--ASDAPVRYVCE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  + + Y  G     + RGDG +GE ++  +R IP+IP VLS   P ++EVRGEV
Sbjct: 116 LKMDGVAVELVYRDGILSVGSTRGDGTTGEGITENLRTIPSIPLVLSGEAPALLEVRGEV 175

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           YI  +DF  LN E    G + +ANPRNAA+G LR+L+      R L  F +G+G+ S   
Sbjct: 176 YIDLDDFQKLNHEREEEGLQVFANPRNAAAGSLRQLDSAVTAKRPLKIFCYGIGQLSGEH 235

Query: 251 AKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               + +L+ M   G  VN    R       +  Y+ +++  R  LPY+IDG+V KVD+ 
Sbjct: 236 PASHHSLLKCMHRWGLRVNLEHSRTLEGIEQVTDYFRQLQQRRDELPYEIDGMVVKVDDL 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LGE+ R+PRW I+ KF  +QA T + DI +Q+GRTG +TPVA+L+PV + G  ++
Sbjct: 296 ALQRELGEKTRTPRWAIACKFPPRQAVTVVEDIVLQVGRTGAITPVAQLKPVEVSGVTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN D I  L           D+ +GD V+V+RAG+VIP VV ++   R+   +   
Sbjct: 356 RASLHNWDEIARL-----------DVLIGDTVVVERAGDVIPDVVKVLTEHRNGQERSVP 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C   VV+             RC   ++C A+  E +KHFV+R A +I+GLG++
Sbjct: 405 LPQSCPACGGPVVKLEGE------VVPRC-QEMSCPARLRESIKHFVARRAMDIDGLGER 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   K E     I+  AD++ L +                D S   L  +I   +   
Sbjct: 458 TIEQLLKRE----LIKSVADLYHLTKEDLLLC------ERLADKSAEKLLTAIAASKTRP 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RF+F+LGIRHVG  +A  LA+ + S    +                L+ +  +G  +A
Sbjct: 508 LGRFLFALGIRHVGEHLASLLARQFGSLDALSHATR----------EELLAIHEIGPQVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            ++ +F+   RN   + AL +    +    EK     +  K  VFTG+L +  R +AQE 
Sbjct: 558 DSVTDFFAKSRNREILAALQRAGV-APQAEEKRSGGPLTGKSFVFTGSLTRFSRKQAQEM 616

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V +LG   S  +S+KTD ++ G+  GSKLEKA+QL ++I++EE+FL ++ 
Sbjct: 617 VERLGGRASGSVSKKTDCVVAGEAAGSKLEKARQLNIQILSEEEFLQMID 666


>gi|119898292|ref|YP_933505.1| DNA ligase (NAD+) [Azoarcus sp. BH72]
 gi|166215393|sp|A1K713|DNLJ_AZOSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119670705|emb|CAL94618.1| DNA ligase (NAD+) [Azoarcus sp. BH72]
          Length = 693

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 266/713 (37%), Positives = 386/713 (54%), Gaps = 49/713 (6%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           EI+ H+  YY    P I D+EYD L R    I  A P+L     P+ P  ++GG     L
Sbjct: 17  EIARHNHAYYVLDTPTIPDAEYDRLFRELQDIEAAHPELL---TPDSPTQRVGGAPLPEL 73

Query: 87  FKVTHSIPTLSLEKIWNI--EDLRKFITRIYRFWQKKDDNS-IFFTLEPKIDGTMITIRY 143
             V H++P LS+    +   + +R F TR+       D +  + +  E K DG  I++RY
Sbjct: 74  VPVRHAVPMLSIRTETDTTAQGVRNFDTRVRNALGLGDGDPAVEYLSELKFDGLAISLRY 133

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
           E G  V AA RGDG +GEDV+  +R I  IP  L    P +IEVRGE+Y+ ++DF ALN+
Sbjct: 134 EHGVLVRAATRGDGETGEDVTHNVRTIQQIPLRLHGAAPAVIEVRGEIYMRRDDFEALNN 193

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLG-KTSEIFAKGQYEMLQKM 261
                G K + NPRNAA+G +R+L+P    R   +FF +GLG          Q E+L ++
Sbjct: 194 RQREAGDKVFVNPRNAAAGAVRQLDPRIAARRPLSFFAYGLGEHAGFDLPATQAELLTRL 253

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
              G PV      ++   G++++++ + ++R+ LPYDIDG+VYKV+   LQ++LG   R 
Sbjct: 254 AAFGVPVCEHREVSSGPEGLIAFHDRIAALRNELPYDIDGVVYKVNRVDLQRELGFVTRE 313

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW ++HK+  ++  TRL  ID+Q+GRTG LTPVARLEPV +GG  +TNATLHN+D I  
Sbjct: 314 PRWAVAHKYPAQEEITRLAGIDVQVGRTGALTPVARLEPVFVGGVTVTNATLHNQDEIDR 373

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS---FPSFCPICQ 438
                      +D+RVGD V+V+RAG+VIP+VV  ++  R  +   F+       CP+C 
Sbjct: 374 -----------KDVRVGDWVIVRRAGDVIPEVVGPVLERRVGEPPRFNLLASYPTCPVCG 422

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S VVR  +       A  RC+GGL C AQ+ + L HF  R A +IEGLG + ++      
Sbjct: 423 SHVVRGEDE------AVARCSGGLFCPAQRKQALLHFAGRRAMDIEGLGDKLVEQLVD-- 474

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++ PAD++ L          + N+   G+ S  NL  +I K RN +L RFIF+LG
Sbjct: 475 --ASIVKTPADLYKL------GILALANLERMGEKSAQNLLAAIEKSRNTTLARFIFALG 526

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IR+VG   A+ LA+++ S                 D  +L +VP VG ++A+ I EF+  
Sbjct: 527 IRNVGEATAKDLARHFGSLDALLAA----------DEGALQQVPDVGPVVAKCIAEFFAE 576

Query: 619 PRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             N+  VE L         G      S  +     V TGTL  + R +A+  +   G  V
Sbjct: 577 AHNVEVVEQLRAAGLRWEEGAPAAPASGSVAGLTFVITGTLPTLSRDEAKALIEAHGGKV 636

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730
           S  +S+KTD ++ G   GSKL KAQ LGV I++E+    LL+    +   + D
Sbjct: 637 SGSVSKKTDYLVAGAEAGSKLAKAQDLGVDIVDEDGLRRLLESGEQSPINNKD 689


>gi|237747723|ref|ZP_04578203.1| DNA ligase [Oxalobacter formigenes OXCC13]
 gi|229379085|gb|EEO29176.1| DNA ligase [Oxalobacter formigenes OXCC13]
          Length = 685

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 266/713 (37%), Positives = 396/713 (55%), Gaps = 49/713 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            ++ + L  EI  ++  YY    PI+ DSEYD L R+   +  A P+L     P+ P  +
Sbjct: 16  AEQAARLRSEIERYNIAYYVLDAPIVPDSEYDRLFRQLQELEKAHPELVV---PDSPTQR 72

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG       KV H IP LSL+   + E++  F  RI       D  ++ +  E K DG 
Sbjct: 73  VGGLPLAQFEKVEHKIPMLSLQNGLSEEEVAAFDKRISDEL---DGENVEYEAELKFDGL 129

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196
            + +RYE G  V AA RGDG SGE+++  I+ + TIP  LS    PE++EVRGEV + K 
Sbjct: 130 AVNLRYENGLLVQAATRGDGTSGENITNNIKTVRTIPLRLSDLAPPEVLEVRGEVLMFKK 189

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS-EIFAKGQ 254
           DF  LN       +K + NPRNAA+G LR+L+     TR L FF +GLG+       + Q
Sbjct: 190 DFHDLNRRQRENEQKEFVNPRNAAAGSLRQLDSQITATRQLRFFAYGLGELKGSPLPRSQ 249

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L     LG PV +  +    F G++ ++N ++  R +LPY+IDG+VYKV+  + Q++
Sbjct: 250 SALLDWFVQLGIPVCDERKVVKGFKGLMGFFNRIEEKRESLPYEIDGVVYKVNSIAEQQK 309

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PR+ I+HKF  ++  T +LDID+Q+GRTG +TPVARL+PV +GG  +TNATLH
Sbjct: 310 LGFISRAPRFAIAHKFPAQEVLTEVLDIDVQVGRTGAITPVARLKPVFVGGVTVTNATLH 369

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED ++            +D+R+GD V+V+RAG+VIP+V+ ++   R  DA+ F  P+ C
Sbjct: 370 NEDEVRR-----------KDVRIGDTVIVRRAGDVIPEVLAVVPERRQADAREFVMPTVC 418

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           P+C S ++R  +       A  RC+G  + C AQ+   L  FVSR A  IEGLG+Q +D 
Sbjct: 419 PVCGSPIIRPEDE------AIARCSGGWIKCPAQKKGGLLLFVSRKALGIEGLGEQLIDQ 472

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                     I   AD++TL          +  +    + S +NL   + K +  +  RF
Sbjct: 473 LVDKN----VINDAADLYTLDLE------TLSQLDRMAEKSASNLLGELEKSKKTTFARF 522

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIRHVG   AR+LA Y+ +  N  Q               L+ V  +G I+A +I 
Sbjct: 523 LYALGIRHVGEATARALAGYFGNLANLRQASE----------EQLLEVADIGPIVAASIK 572

Query: 614 EFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +F+ + RN+  V+ LL      P     EK      +NKK V TGTL  + R  A E + 
Sbjct: 573 QFFSDERNLALVDKLLGVGLHWPEHEMKEKPEELPFQNKKFVLTGTLPSLTRDAAAEIIR 632

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            LG  VS+ +SR TD ++ G  PGSKL KA++LGV++++E +FL L++   + 
Sbjct: 633 NLGGKVSSSVSRNTDYVLAGSEPGSKLAKAEELGVRVIDENEFLQLVKNDKSN 685


>gi|169825829|ref|YP_001695987.1| DNA ligase [Lysinibacillus sphaericus C3-41]
 gi|254781361|sp|B1HTW6|DNLJ_LYSSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|168990317|gb|ACA37857.1| DNA ligase [Lysinibacillus sphaericus C3-41]
          Length = 667

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 235/712 (33%), Positives = 376/712 (52%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +  + ++ L + +  +   YY   KP++ DS YD L     A+  A P L     P+ 
Sbjct: 1   MNEIEQRIAELNKLLHEYGYAYYVLDKPVVADSVYDQLLHELIALEEANPSLIF---PDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG +     KVTH  P LSL   +N  DL++F  ++ +       +   +  E K
Sbjct: 58  PTQRVGGTVVEGFKKVTHDYPMLSLSNAFNEADLQEFDRKVRQAIG----DHFSYVCELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+++YE G FV  A RGDG  GE+++A ++ I  IP  L   I   IEVRGE Y+
Sbjct: 114 IDGLAISLKYENGVFVQGATRGDGVVGEEITANLKTIHAIPLRLKEPI--TIEVRGEAYM 171

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFA 251
            K  F  LN +    G + +ANPRNAA+G LR+L+P      +   F     G       
Sbjct: 172 PKKSFEKLNAQRADNGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEIYGI 231

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            G  EML  +  LGFP N   ++ +T   ++++       R  L Y+IDG+V KVD ++ 
Sbjct: 232 DGHAEMLDYLEDLGFPSNKERQRCSTIEEVMAFIEHWTENRPHLAYEIDGIVIKVDRYAQ 291

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  A+SPRW I++KF  ++  T LLDID+ +GRTG++TP A L PV + G  +  A
Sbjct: 292 QDELGYTAKSPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILTPVQVAGTTVQRA 351

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHNED I+            +DIR+GD V++++AG++IP+VV +++ +R  ++ PF  P
Sbjct: 352 SLHNEDLIR-----------DKDIRLGDTVIIRKAGDIIPQVVGVLIEQRPENSVPFEMP 400

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S ++R           A RC    AC AQ  E +K+FVSR+A NI+GLG + +
Sbjct: 401 KNCPVCDSELIRIEGE------VALRCVNP-ACFAQIAESIKYFVSRNAMNIDGLGDKVV 453

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   +    A  I   +D++ L   Q         +   G+ S TNL ++I   +  S+E
Sbjct: 454 EQLLR----ADLIHDVSDLYHLTIEQLV------ELERMGEKSATNLVNAIQASKENSME 503

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +  LGIRHVG + A+ +++ + S +                   L+ +  +GD +A +
Sbjct: 504 RLLIGLGIRHVGEKAAKIVSEQFGSMEAVMAATE----------EQLVAIYEIGDKMASS 553

Query: 612 IVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +VE++ N      +E L +                  +    K +V TG L+++ R++A+
Sbjct: 554 LVEYFSNDDARAVIERLAEVGVNMTFKGKKVEVVVGDNPFAGKTIVLTGKLEQLTRNEAK 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             + +LG  V+  +S+KTD++I G++ GSKL KA+QLG+++ NE+  +  L 
Sbjct: 614 AKIEELGGTVTGSVSKKTDLVIAGEDAGSKLAKAEQLGIEVWNEDNLIEQLN 665


>gi|167624496|ref|YP_001674790.1| DNA ligase, NAD-dependent [Shewanella halifaxensis HAW-EB4]
 gi|190359286|sp|B0TKB2|DNLJ_SHEHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|167354518|gb|ABZ77131.1| DNA ligase, NAD-dependent [Shewanella halifaxensis HAW-EB4]
          Length = 667

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 383/711 (53%), Gaps = 51/711 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  + E++ L  E++ H+  YY    P I DSEYD L  R  A+    P    +   + 
Sbjct: 1   MQAIQTEIAQLTAELNQHNYRYYVDDSPSIPDSEYDRLLNRLKALETEHPQFCLA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE      ++ H  P LSL+ +++ ++   F  RI          SI +  EPK
Sbjct: 58  PTQRVGGEALAKFEQIQHLKPMLSLDNVFDEQEFTAFNQRIT-----DKTGSISYCCEPK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           +DG  ++I Y  G F  AA RGDG +GE+++  +R I +IP  L  +   + +EVRGEV 
Sbjct: 113 LDGLAVSITYRDGVFERAATRGDGQTGENITENVRTIKSIPLRLRGDNFPLLVEVRGEVI 172

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS---E 248
           +    F ALN+   A G K + NPRNAA+G LR+L+     +R L F+ + LG       
Sbjct: 173 MPHKAFDALNERARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPESW 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             A   Y  L+++R  G PV+  V+  ++   ++ YYN+++  RS+L ++IDG+V KV++
Sbjct: 233 ELADSHYGQLEQLRSWGVPVSQEVKVCDSVAQVIEYYNDIQQRRSSLEFEIDGVVIKVNQ 292

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q  LG  A++PRW  + KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG  +
Sbjct: 293 IAHQLSLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTV 352

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            ++VGD ++++RAG+VIP++V ++  +R  DA+  
Sbjct: 353 SNATLHNADEIARL-----------GVKVGDTIIIRRAGDVIPQIVAVVAEKRPDDAKEI 401

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           SFP+ CP+C S V R          A  RCTGGL C AQ+ E +KHF SR A +I+G+G 
Sbjct: 402 SFPARCPVCDSEVERVEGE------AVARCTGGLFCEAQRKEAIKHFASRKALDIDGMGD 455

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     ++ PAD+F L        + +  +   G  S T L  +I+  +  
Sbjct: 456 KVVEQLIDKE----LVQSPADLFKLTA------SAMTMLERMGMKSATKLVAAIDVAKQT 505

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF+++LGIR VG   A +LA Y+ +                    + I+V  VG I+
Sbjct: 506 TFARFLYALGIREVGEATAANLAAYFKTLDALKAANE----------ETFIKVDDVGTIV 555

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQ 667
           A  +  F   P N+  ++ L++         E       ++ +  V TGTL ++ R+ A+
Sbjct: 556 AAHLAHFLAQPHNLEVIDKLIEAGVHWPAIEEVAEEDLSLKGQTWVLTGTLTQLNRNDAK 615

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+ TD ++ G   GSKL KAQ+LGVK+++EE  + +L
Sbjct: 616 AKLQLLGAKVAGSVSKNTDCLVAGAAAGSKLAKAQELGVKVIDEEALIAIL 666


>gi|331005395|ref|ZP_08328777.1| DNA ligase [gamma proteobacterium IMCC1989]
 gi|330420789|gb|EGG95073.1| DNA ligase [gamma proteobacterium IMCC1989]
          Length = 707

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 250/718 (34%), Positives = 390/718 (54%), Gaps = 45/718 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           SI Q  ++L+ L ++I ++   YY    P I D+EYD L      +    P    S   +
Sbjct: 30  SITQLDQQLNELREKIHHYSYQYYALDNPTIPDAEYDRLFLELQTLEKENPSYVTS---D 86

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD--DNSIFFTL 130
            P  ++G +      +VTH +P LSL+  ++ EDLR+F  R+       D   N I +  
Sbjct: 87  SPTQRVGAQPLSVFSQVTHRLPMLSLDNAFSAEDLREFHRRVTERLASLDITVNEIEYAC 146

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRG 189
           EPK+DG  +++ Y+KG  V  A RGDG +GED++  +R I +IP  L   N P+ +EVRG
Sbjct: 147 EPKLDGIAVSLVYQKGILVQGATRGDGKTGEDITQNVRTIASIPLRLQGDNYPDDLEVRG 206

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248
           E+Y+ K  F  LN    A   K +ANPRNAA+G LR+L+      R L    + +G    
Sbjct: 207 EIYLPKAGFEKLNKIADAREEKRFANPRNAAAGSLRQLDSRITAQRPLEMCAYSVGVVDG 266

Query: 249 IF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   ++L  +   GF +N  +           Y++++   R+ LPYDIDG+V+KVD
Sbjct: 267 GQVPTKHSDILYALSAWGFRINQEMASVKGIEACCDYFDQLSKKRNALPYDIDGIVFKVD 326

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQKQLG  +R+PRW I+ KF  ++  T LLD++ Q+GRTG +TPVARL+PV +GG  
Sbjct: 327 SIELQKQLGFVSRAPRWAIAQKFPAQEELTELLDVEFQVGRTGAITPVARLKPVFVGGVT 386

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN D ++ L            +++GDRV+++RAG+VIP++V  ++++R   A+ 
Sbjct: 387 VSNATLHNSDEVERL-----------GVKIGDRVIIRRAGDVIPQIVSAVIDQRPDHARD 435

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             FPS CP+C S  VR          A  RC+GGL C AQ  + +KH+VSR A +++GLG
Sbjct: 436 IIFPSSCPVCTSPTVRVEGE------ATIRCSGGLVCPAQIKQAIKHYVSRKAMDVDGLG 489

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++   +       I   AD++ LQ  Q  +          G+ S +N+  ++ + +N
Sbjct: 490 DKLVEQLVE----LGHITSVADLYDLQVEQLANM------ERMGEKSASNVIHALEQSKN 539

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +  RFI++LG+R VG   AR+LA+Y+                       L RV  VG +
Sbjct: 540 TTFARFIYALGVREVGEATARNLAQYFGDISRLLTATE----------EDLQRVNDVGPV 589

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +AQ IV F    +N   +  L ++        +++    + +   V TGTL+++ R +A+
Sbjct: 590 VAQFIVAFLSQQKNKEVIAKLQEKGVHWEVIEQQDNPQPLLDTVYVLTGTLEQLTRDEAK 649

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            ++ QLGA V+  +S+KT  ++ G+N GSKL KA+ LGV I+ E+  + LL +Y  TL
Sbjct: 650 AHLQQLGATVTGSVSKKTHFLVAGENAGSKLTKAESLGVNILGEQDLINLLNEYGITL 707


>gi|91775756|ref|YP_545512.1| DNA ligase, NAD-dependent [Methylobacillus flagellatus KT]
 gi|123254532|sp|Q1H1G6|DNLJ_METFK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91709743|gb|ABE49671.1| DNA ligase, NAD-dependent [Methylobacillus flagellatus KT]
          Length = 693

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 256/713 (35%), Positives = 382/713 (53%), Gaps = 47/713 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            +++ +L   I  +D  YY  + P + DSEYD + R   A+  A P+L     P+ P  +
Sbjct: 18  AEKVEALRATIRRYDYEYYVLNAPSVPDSEYDRVFRELKALEDAHPELV---TPDSPTQR 74

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQK-KDDNSIFFTLEPKI 134
           +GG     L  V H +P LS+E   +   +    F  R+ +      +D  I +  E K 
Sbjct: 75  VGGAAMAELMPVRHHVPMLSIETETDTTPQGAYNFDARVRKKLGLLPEDGPIEYAAELKF 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++RYE G  V AA RGDG  GEDV+  IR +  IP  L    PE++EVRGEVY+S
Sbjct: 135 DGLAMSLRYEHGLLVQAATRGDGEVGEDVTHNIRTMRQIPLQLHGEAPEVLEVRGEVYMS 194

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFAK 252
           + DF   N      G+    NPRN A+G +R+L+P     R L+FF +GLG+T       
Sbjct: 195 RPDFERYNARQREHGKPTLVNPRNGAAGSIRQLDPRLAAQRPLSFFAYGLGETKGWQVPL 254

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              ++L  ++ LG PV N          + +++  + + R  LPYDIDG+VYKV+   LQ
Sbjct: 255 THAQVLDALKALGLPVCNERAVGMGAEALAAFHQAISAKRDQLPYDIDGVVYKVNRLDLQ 314

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG R+R P W ++HKF  ++  T L  ID+Q+GRTG +TPVARL+PV +GG  +TNAT
Sbjct: 315 RELGFRSREPNWAVAHKFPAQEEMTVLEHIDVQVGRTGAITPVARLKPVFVGGVTVTNAT 374

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+D I             +D+R+GD V+V+RAG+VIP+VV +I   R   +QP+    
Sbjct: 375 LHNQDEIDR-----------KDVRIGDTVVVRRAGDVIPEVVSVIKERRPAGSQPYILLD 423

Query: 433 F----CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
                CP+C S  VR          AA RCTGGL C+AQ+ + + HF SR A +IEGLG+
Sbjct: 424 AIGGLCPVCGSHAVRLPEE------AAVRCTGGLFCAAQRKQAILHFASRRAMDIEGLGE 477

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +D           +   AD++   +    +   +  +      S  NL D++ K +  
Sbjct: 478 KLVDQLVDQN----MVETLADLYDPGK---INLETLSGLDRMAMKSAQNLLDALQKSKQA 530

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGIR+VG   A+ LA+++                   D  +L +VP VG ++
Sbjct: 531 TLNRFIYALGIRNVGEATAKDLARHFGRLDALQAA----------DVDTLQQVPDVGPVV 580

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           A++I EF+    N   +  L       S    +   SS++E K  V TGTL  + R +A+
Sbjct: 581 ARSIAEFFAEEHNREVIRKLRDAGIHWSETDGQPASSSKLEGKTFVLTGTLPTMSRDEAK 640

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           E +   G  VS  +S+KT  ++ G + GSKL KAQ+LG+ I++EE  L LL +
Sbjct: 641 EKIEAAGGKVSGSVSKKTSYVVAGSDAGSKLAKAQELGLAILDEEGLLSLLAE 693


>gi|254226208|ref|ZP_04919802.1| DNA ligase [Vibrio cholerae V51]
 gi|125621244|gb|EAZ49584.1| DNA ligase [Vibrio cholerae V51]
          Length = 669

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 386/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L+ L + +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+         ++  F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+        ++  +   G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+++LGIR VG   A +LA+++LS +   Q                I VP VG ++A 
Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+ 
Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|33597876|ref|NP_885519.1| DNA ligase [Bordetella parapertussis 12822]
 gi|81425567|sp|Q7W0T4|DNLJ_BORPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33574305|emb|CAE38638.1| DNA ligase [Bordetella parapertussis]
          Length = 696

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 256/728 (35%), Positives = 388/728 (53%), Gaps = 69/728 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ ++ L  EI  H+  YY +  P + D+EYDAL R   A+    P+L     P+ P  +
Sbjct: 9   QQAIARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELV---TPDSPTQR 65

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFFTLEPK 133
           +G         V H++P LSL   ++ ED+R F  R+    +       D  + +  E K
Sbjct: 66  VGAAPLAEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEYFCELK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I++ YE+G+   AA RGDG +GEDV+A IR I  +P  L      ++EVRGEV +
Sbjct: 126 LDGLAISLCYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLHGAPR-VLEVRGEVLM 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
           ++ +F  LN    A G K + NPRNAA+G LR+L+P     R L FF +  G+   +   
Sbjct: 185 NRAEFERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLPEG 244

Query: 253 G---------------------QYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKS 290
                                    ML  +  LG PVN     +     G++++Y  +  
Sbjct: 245 MPTRFDEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYERIGK 304

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
           +R+ LPYDIDG+VYKVD    Q+ LG  AR+PR+ ++HKF  ++A T+LL I++Q+GRTG
Sbjct: 305 LRADLPYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQVGRTG 364

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TPVARL PV +GG  +TNATLHNED I+            +D+R+GD V+V+RAG+VI
Sbjct: 365 AITPVARLAPVFVGGVTVTNATLHNEDEIRR-----------KDVRIGDTVIVRRAGDVI 413

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P+VV  ++ +R  DA+ F   + CPIC S + R          A  RCTGGL C+AQ+ +
Sbjct: 414 PEVVGPVLEKRPADAREFVMLTACPICGSAIERPEGE------AIARCTGGLFCAAQRKQ 467

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
            L H   R A +IEGLG++ +D    ++     ++  ADI++L         ++  +   
Sbjct: 468 TLLHAAGRKALDIEGLGEKLIDQLVDADR----VKSLADIYSLTA------FELAALERM 517

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
           G  S  NL  +I++ R  +L R +F+LGIRHVG   AR +A+++ S +            
Sbjct: 518 GKKSAENLVAAIDQARRPALGRLLFALGIRHVGETTARDVARHFGSMERIMDASE----- 572

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
                 +L+ VP VG ++A +I  F+  P N   VE L ++        E   +S +  K
Sbjct: 573 -----EALLAVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQGVHPQAEAEPEGTS-LAGK 626

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             V TGT+    R +A   +   G  VS  +S+KT  ++ G++ GSKL KAQ+LGV +++
Sbjct: 627 TFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYLVTGEDAGSKLTKAQELGVPVLD 686

Query: 711 EEQFLFLL 718
           E+    LL
Sbjct: 687 EDGLKALL 694


>gi|163736311|ref|ZP_02143730.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis BS107]
 gi|161390181|gb|EDQ14531.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis BS107]
          Length = 752

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 302/763 (39%), Positives = 441/763 (57%), Gaps = 57/763 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +     +++L+ ++AR     L+ E+   D  Y+Q   P I D++YDA KR   A+A 
Sbjct: 1   MTQSGNNNLKSLTSDEARARFLLLQDELRAADLAYHQADDPEISDADYDAKKREYRALAE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP+LA        L  +G  +     K+TH+   +SL   ++ ED+R F   + ++   
Sbjct: 61  HFPELADGATA---LETVGAPVASGFGKITHAQRMMSLGNAFDDEDVRDFDKGLRKYLGL 117

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
              + + +T EPKIDG  +++RYE GK ++AA RGDG  GE+V+   R I  IP      
Sbjct: 118 GASDPLAYTAEPKIDGLSLSLRYENGKLIHAATRGDGAVGENVTENARTIADIP-QEIAA 176

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P ++EVRGEVY+S  DF ALND   A G K +ANPRNAA+G LR+LN     +R L FF
Sbjct: 177 APAVLEVRGEVYMSHEDFAALNDRHAAQGGKTFANPRNAAAGSLRQLNAEITRSRPLRFF 236

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ SE  A+ Q+E L ++R +GF  N   +  +T   +++ Y  +++ R+TL YDI
Sbjct: 237 AYSWGELSEPLAETQFEALTRLREMGFQTNPLTKYCSTTDALIAQYRLIEAQRATLGYDI 296

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD  +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL+
Sbjct: 297 DGVVYKVDALALQARLGFRSTTPRWAIAHKFPAELAWTRLEGIDIQVGRTGALSPVARLQ 356

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG +++NATLHNEDYI GLD+ G+ +R G+DIR+GD V V RAG+VIPK+ D+ + 
Sbjct: 357 PVTVGGVVVSNATLHNEDYIAGLDSKGEEIRDGKDIRIGDWVQVYRAGDVIPKIADVDLP 416

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  DA PF+FP+ CP C S  VR+         A  RCTGGL C AQ +E+LKHFVSR 
Sbjct: 417 KRPEDAVPFAFPAACPECGSDAVREEG------DAVRRCTGGLICPAQAVEKLKHFVSRK 470

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+I+GLG +Q++ F+   D   +I+ PADIFTLQ R   +  K++N  G+G+ S  NL+
Sbjct: 471 AFDIDGLGAKQIEAFY--GDAVLTIKTPADIFTLQARDAKTLAKLKNRDGWGETSAANLF 528

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN-------------- 585
            +I ++R I L R IF LGIRHVG   AR LA +Y  +   A  ++              
Sbjct: 529 AAIEEKRRIELARLIFGLGIRHVGEVGARDLALHYADWDAMAAAVDTARPAALAQRAADE 588

Query: 586 -----------------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
                                        N+ +     W  L  +  +G  +  ++ + +
Sbjct: 589 AEDRERVAAAQENRRARIKEARDRAVATLNVPSEARAAWDDLTGIDGIGATLGVSLSDAF 648

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            N     A +AL   +        +N  S +    +VFTGTL+K+ R +A+     LGA 
Sbjct: 649 ANTEERAAFDALRGHLDIIPPEAPQN-DSPVTGLTVVFTGTLEKMTRAEAKARAEGLGAK 707

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+KTDI++ G   GSK +KA+ LGV+I++E+ +L L+ 
Sbjct: 708 VAGSVSKKTDILVAGPGAGSKEQKARDLGVRILDEDGWLELIA 750


>gi|329115587|ref|ZP_08244309.1| DNA ligase [Acetobacter pomorum DM001]
 gi|326695015|gb|EGE46734.1| DNA ligase [Acetobacter pomorum DM001]
          Length = 710

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 284/726 (39%), Positives = 415/726 (57%), Gaps = 35/726 (4%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +   +P   ++++QAR+EL  L  EI++H+  YY+   P I D+EYDAL+RR DAI  
Sbjct: 16  MPEPAFLP-ATMTLQQAREELEHLAAEIAHHNAAYYRNDAPEISDAEYDALRRRYDAIVA 74

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P    +E  N     +G   + +  K  H +P LSL+ +++ ED   FI+R  RF   
Sbjct: 75  QHPQ---AEPENSAAQAVGAAPDTAFGKHIHLVPMLSLDNVFDREDFEGFISRATRFLGL 131

Query: 121 --KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
             +    + F  EPKIDG  I++ YEKG+FV    RGDG  GEDV+A +R +  +P  LS
Sbjct: 132 DQEATEQLIFVGEPKIDGLSISLTYEKGRFVRGTTRGDGTEGEDVTANLRTLKDLPLRLS 191

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237
            + P++IE+RGEV++SK  FL LN    A  ++ +ANPRNAA+G LR+L+      R L+
Sbjct: 192 GSYPDLIEIRGEVFLSKKHFLELNAAQEAANKRLFANPRNAAAGSLRQLDSKITAQRPLS 251

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            F + LG  SE  ++  +  L++++  GFPVN   RQ         ++ E+   R+ L Y
Sbjct: 252 LFAYALGFCSEKISRSHWAYLEQLKAWGFPVNPLSRQIKGVEDAEVFFAEVSQNRAELAY 311

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+VYK+D+ +LQ++LG   R+PRW I+ KF  +QA TRL +I+IQ+GRTG LTPVA 
Sbjct: 312 DIDGVVYKIDDLALQERLGFAGRAPRWAIAWKFPAEQAVTRLKEIEIQVGRTGALTPVAH 371

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI- 416
           LEPVN+GG L+  ATLHNED I             +D+R GD V ++RAG+VIP+V+ + 
Sbjct: 372 LEPVNVGGVLVMRATLHNEDEIAR-----------KDVRPGDMVFIQRAGDVIPQVLGVA 420

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
              +  P   P+ FP  CP C +  VR          A  RCTGGL C AQ +ERL HFV
Sbjct: 421 PSTDSTPRQAPYHFPDHCPACGAAAVRPEGE------AVRRCTGGLTCPAQVVERLIHFV 474

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR AF+IEGLG + +  F         I  P DIF L          IE   G+G+ SV 
Sbjct: 475 SRQAFDIEGLGDRSIREFHD----IGLILTPGDIFRLHEH----AADIEKRDGWGEQSVQ 526

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
            L  +I  RR ISL RFI++LGIR +GA  AR LA++Y +Y+N+  ++       +D  L
Sbjct: 527 KLLQAIESRRTISLSRFIYALGIRRIGASNARLLARHYGTYENWFNQMQAAAIIGSDARL 586

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            L  +  +G   A+ +V F     N+  +  L   ++ +           +  K +VFTG
Sbjct: 587 ELGSITGIGTTTAEDLVAFVAEEHNLQTLADLRANLTIT--EETAASEGALAGKTIVFTG 644

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  + R +A+    ++GA VS  +S+KTD++++G+  GSK +KA +LG++ M+E ++  
Sbjct: 645 TLHTMTRPEAKATAERMGAKVSDSVSKKTDLVVLGEKAGSKAKKAVELGLQTMDEAEWNA 704

Query: 717 LLQQYN 722
              +  
Sbjct: 705 FCSEQE 710


>gi|157374877|ref|YP_001473477.1| DNA ligase (NAD(+)) [Shewanella sediminis HAW-EB3]
 gi|190359288|sp|A8FU26|DNLJ_SHESH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157317251|gb|ABV36349.1| DNA ligase (NAD(+)) [Shewanella sediminis HAW-EB3]
          Length = 670

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 249/712 (34%), Positives = 374/712 (52%), Gaps = 50/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   ++E+  L   ++ H+  YY    P + D+EYD L  R   +    P+L     P+ 
Sbjct: 1   MHAIQEEIKQLTSVLNEHNYRYYVDDAPSVPDAEYDRLINRLKQLEAENPELCL---PDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG       ++TH  P LSL+ +++ ++   F  RI      K   +  F  EPK
Sbjct: 58  PTQRVGGVALAKFNQITHLKPMLSLDNVFSEDEFDAFYKRISD----KTSETPTFCCEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  ++I Y  G +  AA RGDG  GED++  +R I +IP  L   + P ++EVRGEV 
Sbjct: 114 LDGLAVSILYRDGVYERAATRGDGSVGEDITENVRTIRSIPLKLRGSDFPPLLEVRGEVI 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + K  F +LND   A G K + NPRNAA+G LR+L+     +R L F+ + LG       
Sbjct: 174 MPKKAFDSLNDRARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPESW 233

Query: 252 K---GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
               G +E L +++  GFPV++ V+       ++ YY ++   R  L Y+IDG+V KVD 
Sbjct: 234 PLGKGHHEQLMQLKSWGFPVSSEVKLCGDVKTVLDYYADILERREALDYEIDGVVIKVDS 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q QLG  A++PRW  + KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG  +
Sbjct: 294 IEHQLQLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            ++VGD V+V+RAG+VIP+VV I+  +R   A   
Sbjct: 354 SNATLHNADEIARL-----------GVKVGDTVIVRRAGDVIPQVVAIVAEKRPVSANDI 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP+C S V R          A  RCTGGL C AQ+ E +KHF SR A N++G+G 
Sbjct: 403 LFPQTCPVCDSMVERTEGE------AVARCTGGLFCEAQRKEAIKHFASRKALNVDGMGD 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     +  PAD+F L        + +  +   G  S T L  +I   +  
Sbjct: 457 KVVEQLIDKE----LVASPADLFRLTA------SAMTMLDRMGMKSATKLVAAIEDAKQT 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF++ LGIR VG   A +LA Y+ +                 D    I+V  VG I+
Sbjct: 507 TFARFLYGLGIREVGEATAANLANYFKNLDKLKSA----------DADEFIKVDDVGAIV 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQ 667
           AQ +  F+  P N+  V+ L++         E    +  ++ +  V TGTL K+ R+ A+
Sbjct: 557 AQHLTYFFAQPHNLEVVDNLVQAGVHWPEIEEVAEEALSLKGQTWVLTGTLTKLNRNDAK 616

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  LGA V+  +S+ TD ++ G+  GSKL KAQ LGVK+++E+  L +L 
Sbjct: 617 AQLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQDLGVKVLDEDGLLAVLA 668


>gi|54293931|ref|YP_126346.1| DNA ligase [Legionella pneumophila str. Lens]
 gi|81368949|sp|Q5WXV3|DNLJ_LEGPL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|53753763|emb|CAH15221.1| DNA ligase [Legionella pneumophila str. Lens]
          Length = 673

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 247/713 (34%), Positives = 383/713 (53%), Gaps = 46/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +  ++ + +L+++I  +D  YY   +P++ D+EYD   +        +P       P
Sbjct: 1   MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G  + +   V H  P LSL  ++  ++L+ FI R      +  +  + F  E
Sbjct: 58  DSPTQRVSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAIEKLDE-PNQQLVFACE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  + + YE G   +AA RGDG  GE+++A I+ I ++P      N P++IEVRGE
Sbjct: 117 PKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG-KTSE 248
           VYI K DF A N     +G K +ANPRNAA+G LR+LNP    +R L  + +G+G     
Sbjct: 177 VYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDY 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L  ++  GF V+   R+A    G + YY  M + R+ LP++IDG+VYK+D 
Sbjct: 237 KLPNSHLEQLNLLKEFGFRVSPETRRAVGIEGCLDYYQYMLAKRNQLPFEIDGVVYKIDS 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ+QLG  +R+PR+  +HKF   +  TRL+ +D Q+GRTG +TPVARLEPV++GG  +
Sbjct: 297 ISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I             +DIR+GD V+++RAG+VIP+VV +I+ +R  +A+  
Sbjct: 357 SNATLHNFDEITR-----------KDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMI 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VVR+ +       A  RC GGL C AQ    + HF SR A  IEGLG 
Sbjct: 406 ELPKNCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGS 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +D           +   AD++ L          + ++   G+ S  NL  ++ K +  
Sbjct: 460 VLIDQLVDE----GIVHHLADLYEL------DLQTLASLPRMGEKSAKNLLSALEKSKKT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF+++LGIR +G   AR LA++Y   +                   L+ +  +G + 
Sbjct: 510 TFNRFLYALGIREIGEAGARVLAEHYCDVEGLKAAT----------IEELMTLNDIGPVA 559

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  +V F+    N+  ++ LL+     P   + + N  +    K +V TGTL  + R +A
Sbjct: 560 ASHVVHFFAQAHNLEVIDRLLELGIHWPKSEKIQVNQQNPFFGKTVVLTGTLSTMGREEA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +  LGA VS  +S KTD ++ G   GSKL KA +LGV I+ E++FL  + 
Sbjct: 620 KAKLLALGAKVSGSVSSKTDYVVAGSEAGSKLIKATELGVAIIEEDEFLKWVN 672


>gi|217972882|ref|YP_002357633.1| DNA ligase, NAD-dependent [Shewanella baltica OS223]
 gi|254781416|sp|B8EEK5|DNLJ_SHEB2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|217498017|gb|ACK46210.1| DNA ligase, NAD-dependent [Shewanella baltica OS223]
          Length = 685

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 246/710 (34%), Positives = 379/710 (53%), Gaps = 51/710 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ E A + + +L Q ++ H+  YY    P I DSEYD L +R   +   +P L  + 
Sbjct: 12  EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVA- 70

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F 
Sbjct: 71  --DSPTQRVGGLALAKFDQITHLKPMLSLDNAFDEADFSAFHKRVTDKVG-----EVSFC 123

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            EPK+DG  ++I Y  G    AA RGDG  GED++  ++ I +IP  L  N  PE++EVR
Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVR 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE ++ K  F ALND   A   K + NPRNAA+G LR+L+      R L F+ + LG   
Sbjct: 184 GEAFMPKAAFEALNDRARAKDEKLFVNPRNAAAGSLRQLDSKITAARSLAFYAYALGVVE 243

Query: 248 ---EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                 AK  +E LQ+++  G PV++ ++       +  YY ++ + RS L ++IDG+V 
Sbjct: 244 PDSHPLAKTHFEQLQQLKSWGLPVSSEIKVCAELSQVYDYYKDILTRRSDLAFEIDGVVM 303

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++   Q++LG  A+SPRW I++KF  ++  T L  +D Q+GRTG +TPVARL+PV +G
Sbjct: 304 KVNDIDQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 363

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN + I  L            I+VGD V+++RAG+VIP++V I+   R   
Sbjct: 364 GVTVSNATLHNANEIARL-----------GIKVGDTVIIRRAGDVIPQIVAIVPERRPET 412

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A    FP  CP+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+
Sbjct: 413 ATDIVFPHNCPVCGSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDID 466

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G + ++     E     ++ PAD+F L        + +  +   G  S TNL  +I  
Sbjct: 467 GMGDKVVEQLIDKE----LVQSPADLFKLTA------SMMTMLDRMGMKSATNLAAAIEA 516

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+++LGIR VG   A +LA ++ S                     L  V  V
Sbjct: 517 AKTTTLARFLYALGIREVGEATAANLAAHFASLDALRVAT----------VEQLTEVEDV 566

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQR 663
           G ++AQ +  F+  P N+  ++AL+            +     ++ +  V TGTL ++ R
Sbjct: 567 GAVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSAEAQPLKGQTWVLTGTLNQLNR 626

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           + A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+M+E++
Sbjct: 627 NDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDEDE 676


>gi|229917963|ref|YP_002886609.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b]
 gi|229469392|gb|ACQ71164.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b]
          Length = 664

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 237/710 (33%), Positives = 377/710 (53%), Gaps = 52/710 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  + +  L Q ++ +   YY   +P + DSEYD L      I   +P+L     P+ P 
Sbjct: 2   EMAERVEELRQTLNQYGYEYYVLDRPSVPDSEYDRLMNELIQIETDYPEL---RTPDSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG    +  KVTH  P LSL  +++ E+L +++ RI +        +  F  E K D
Sbjct: 59  QRVGGAPLDAFVKVTHDTPMLSLGNVFSKEELVEWVERIEKDLG----YTPTFVAELKFD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  ++++YE G+ V  A RGDG +GED++  ++ I +IP  L+ ++    EVRGE Y+ K
Sbjct: 115 GLAVSLKYENGRLVRGATRGDGTTGEDITQNLKTIRSIPLRLNEDV--TFEVRGEAYMPK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254
             F  LNDE   +G   +ANPRNAA+G LR+L+     +R L FF +GL    ++ A   
Sbjct: 173 RSFEQLNDERERIGEPLFANPRNAAAGSLRQLDSKIAASRNLAFFAYGLVSQDDLVAS-H 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  ++ LG  V+       T   +  Y     + RS LPY+IDG+V KV  +  Q+Q
Sbjct: 232 DESLDYLKRLGVAVSGDYTTCQTADELWDYIETYVTKRSDLPYEIDGIVIKVAGYEEQEQ 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW +++KF  ++  T + D+D  +GRTG +TP AR  PV++ G+ +T ATLH
Sbjct: 292 LGFTAKSPRWAVAYKFPAEEVVTTIEDVDFSVGRTGKVTPRARFAPVSVAGSTVTYATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED+IK            +D+ +GDRV++K+AG+VIP VV  + +ER  + +   FP+ C
Sbjct: 352 NEDFIK-----------EKDLHIGDRVVIKKAGDVIPAVVSALASERSGEERVIEFPTHC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S ++R          A HRC     C AQ LE L HFVSR A NI+GLG++ +   
Sbjct: 401 PACGSELIRLEGE------ADHRCVNP-ECPAQLLEGLIHFVSRQAMNIDGLGEKVITQL 453

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +    A  +   AD++ L R           +   G+ SVTNL  +I + +  SLER +
Sbjct: 454 HE----AGLVHNVADLYRLDRDDLLG------LERMGETSVTNLLSAIEQSKQNSLERVL 503

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG + A  +A+ + +                     L  +  +G  +A++IV 
Sbjct: 504 FALGIRLVGQKAASLIAERFETMDAIIAAT----------VEELTSIDGIGTKMAESIVL 553

Query: 615 FYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +++ P     V+ L +          +      + +  K +V TG L ++ R +A + + 
Sbjct: 554 YFEKPEARELVKELAESGVNLSFKGMKRPTTEGAPLSGKTVVLTGKLHEMTRGEAGKQLE 613

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            LGA V+  +S+ TD+++ G+  GSKL KA+ LG+++ +E + L  L+++
Sbjct: 614 LLGASVTGSVSKNTDLLVAGEKAGSKLAKAESLGIEVWDEAKLLDFLKEH 663


>gi|251788438|ref|YP_003003159.1| NAD-dependent DNA ligase LigA [Dickeya zeae Ech1591]
 gi|247537059|gb|ACT05680.1| DNA ligase, NAD-dependent [Dickeya zeae Ech1591]
          Length = 682

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 252/717 (35%), Positives = 400/717 (55%), Gaps = 50/717 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
              +++ AR+ +  L   I +HD  Y+    P ILDSEYD LKR    +    P L  S 
Sbjct: 7   NQQNVDTARRRIKELRILIRHHDIKYHSEDDPEILDSEYDLLKRELSELEIQHPFLVTS- 65

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++G E  ++   + H +P LSL+ ++N +  + F  R+      K+D  + F 
Sbjct: 66  --DSPTQRVGAEPLVAFGTIKHEVPMLSLDNVFNEDGFKAFSKRVSERL--KNDKELIFC 121

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVR 188
            E K+DG  +++ YE G    A+ RGDG +GE++++ +R I  IP  L  +  P+ +EVR
Sbjct: 122 CELKLDGLAVSLLYENGILERASTRGDGTTGENITSNVRTIRAIPLRLEGDNIPQRLEVR 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV++    F ALN+E    G K +ANPRNAA+G LR+L+P    TR L F  +G+G   
Sbjct: 182 GEVFMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRVTATRPLTFLCYGVGLVE 241

Query: 248 E-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ L + R  G PV++ +R       ++ +Y +++  R  L +DIDG+V KV
Sbjct: 242 GGALPDTHWQRLMQFRDWGLPVSDRIRLCTGSDAVLDFYRQVEQERGALGFDIDGVVIKV 301

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +E +LQ++LG  AR+PRW ++ KF  ++  T L D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 302 NELTLQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVARLEPVAVAGV 361

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHN D I+ L            +++GDRV V+RAG+VIP++V ++++ER  DA+
Sbjct: 362 VVSNATLHNADEIERL-----------GVQIGDRVAVRRAGDVIPQIVSVVLSERPADAR 410

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R          A  RCTGGL C+AQ+ E LKHFVSR A ++EG+
Sbjct: 411 PVVFPTHCPVCGSDVERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVEGM 464

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D     E     ++ PAD+  L          +  +   G  S  NL +++NK +
Sbjct: 465 GDKIIDQLVDKE----YVKTPADLLRL------DIGILTRLDRMGPKSAQNLVNALNKAK 514

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           + +  RF+++LGIR VG   A +LA ++ + +               D  +L +V  VG 
Sbjct: 515 STTFARFLYALGIRDVGEATAANLAAHFGTLEALQAA----------DLDALQQVQDVGI 564

Query: 607 IIAQAIVEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           ++A  +  F     N   ++ L+           +    +  +S    K +V TG+L  +
Sbjct: 565 VVATHVRNFLDEAHNQQVIQELIGDDVGLHWPDPVVVDVEASTSPFAGKTVVLTGSLSLL 624

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R +A++ +T LGA VS  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 625 SRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLTKAQELGIDVIDEAEMMRLL 681


>gi|121587330|ref|ZP_01677101.1| DNA ligase [Vibrio cholerae 2740-80]
 gi|121730035|ref|ZP_01682446.1| DNA ligase [Vibrio cholerae V52]
 gi|147675693|ref|YP_001216443.1| NAD-dependent DNA ligase LigA [Vibrio cholerae O395]
 gi|153818602|ref|ZP_01971269.1| DNA ligase [Vibrio cholerae NCTC 8457]
 gi|227081145|ref|YP_002809696.1| DNA ligase [Vibrio cholerae M66-2]
 gi|229505430|ref|ZP_04394940.1| DNA ligase [Vibrio cholerae BX 330286]
 gi|262167192|ref|ZP_06034905.1| DNA ligase [Vibrio cholerae RC27]
 gi|298498912|ref|ZP_07008719.1| DNA ligase, NAD-dependent [Vibrio cholerae MAK 757]
 gi|190359299|sp|A5F2W3|DNLJ_VIBC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781449|sp|C3LTL9|DNLJ_VIBCM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|121548413|gb|EAX58473.1| DNA ligase [Vibrio cholerae 2740-80]
 gi|121628224|gb|EAX60744.1| DNA ligase [Vibrio cholerae V52]
 gi|126510828|gb|EAZ73422.1| DNA ligase [Vibrio cholerae NCTC 8457]
 gi|146317576|gb|ABQ22115.1| DNA ligase [Vibrio cholerae O395]
 gi|227009033|gb|ACP05245.1| DNA ligase [Vibrio cholerae M66-2]
 gi|227012788|gb|ACP08998.1| DNA ligase [Vibrio cholerae O395]
 gi|229357653|gb|EEO22570.1| DNA ligase [Vibrio cholerae BX 330286]
 gi|262024413|gb|EEY43101.1| DNA ligase [Vibrio cholerae RC27]
 gi|297543245|gb|EFH79295.1| DNA ligase, NAD-dependent [Vibrio cholerae MAK 757]
          Length = 669

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 386/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L+ L + +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSDVAQRLTELRKTLHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+    Q    ++  F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIQAVQHSA--FCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I  IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGMTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R  L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQFLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+        ++  +   G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+++LGIR VG   A +LA+++LS +   Q                I VP VG ++A 
Sbjct: 509 PKFLYALGIREVGDATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+ 
Sbjct: 559 HLLAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|183179445|ref|ZP_02957656.1| DNA ligase [Vibrio cholerae MZO-3]
 gi|183012856|gb|EDT88156.1| DNA ligase [Vibrio cholerae MZO-3]
          Length = 669

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 386/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L+ L + +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+         ++  F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+        ++  +   G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+++LGIR VG   A +LA+++LS +   Q                I VP VG ++A 
Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+ 
Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|152997408|ref|YP_001342243.1| DNA ligase, NAD-dependent [Marinomonas sp. MWYL1]
 gi|190359264|sp|A6W0S9|DNLJ_MARMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|150838332|gb|ABR72308.1| DNA ligase, NAD-dependent [Marinomonas sp. MWYL1]
          Length = 672

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 247/709 (34%), Positives = 383/709 (54%), Gaps = 45/709 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L Q+++ +   Y+   +PI+ D+ YD   R+  +I    P+  ++   + P  ++
Sbjct: 4   QQMLDLIQQLNDYSYAYHVKDEPIVPDAVYDRDYRQLQSIEAEHPEWIQA---DSPTQRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G + +     V H++P LSL+  ++ E L  F  RI +    +    + +  EPK+DG  
Sbjct: 61  GEKPDSGFTNVAHTVPMLSLDNAFDNESLADFDQRIRKLLNAE---QVTYCCEPKLDGLA 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKND 197
           I++RYE+G+ V    RGDG SGED+++ I+ I ++P    +   P ++EVRGE+Y+ K  
Sbjct: 118 ISLRYEEGRLVRGVTRGDGLSGEDITSNIKTIYSVPLKLRTKTPPAVLEVRGEIYMPKEG 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFAKGQY 255
           F  LN   +  G K + NPRNAA+G LR+L+P     R L    + +G        +  Y
Sbjct: 178 FEKLNALAVEQGEKTFVNPRNAAAGSLRQLDPKVTAKRPLVMCAYSIGYVEGWEQPESHY 237

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
             L ++   GF  N+ +  A    G + YY ++   R++L YDIDG+VYKVD+ +LQ QL
Sbjct: 238 AGLLQLSEWGFRTNDLMITAEGAQGCIDYYEKLNEKRASLSYDIDGIVYKVDQIALQNQL 297

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  AR+PRW I+ KF  ++  TR+L +D Q+GRTG +TPVARLEPV +GG  ++NATLHN
Sbjct: 298 GFIARAPRWAIARKFPAQEEMTRILGVDFQVGRTGAITPVARLEPVFVGGVTVSNATLHN 357

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           +D I  L            ++V D V+V RAG+VIPKVV +++++R  +A    FP  CP
Sbjct: 358 KDEIARL-----------GVKVNDFVIVHRAGDVIPKVVQVVIDKRPENATEVVFPEACP 406

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C S + +          A  RCTGGL C AQ  E LKHFVSR A +I+GLG + ++   
Sbjct: 407 VCGSDLEQVEGE------AVIRCTGGLVCGAQLKESLKHFVSRKAMDIDGLGDKLIEQLV 460

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             +     ++ P DIFTL  ++      + ++   G  SV  L  SI   ++    RFI+
Sbjct: 461 DQQ----LVKTPVDIFTLSEKKD----TLLSMERMGQKSVEKLLASIEIAKSTQFNRFIY 512

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           SLGIR VG   AR+L  Y+    +              D  +L+ V  VG I+AQ +  F
Sbjct: 513 SLGIREVGEATARALTSYFTELDDLMAA----------DQETLVEVEDVGPIVAQHVRLF 562

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +    N   ++ LL        + + +     +  K  V TG+L +  R + ++ +  LG
Sbjct: 563 FDQELNRDTIKGLLAAGVVWEKKQQVSADELPLSGKTYVVTGSLSQFSRDQVKDKLQALG 622

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           A VS  +S KTD ++ G+  GSKL KAQ L V I++E   + LL ++  
Sbjct: 623 AKVSGSVSAKTDCLVAGEKAGSKLTKAQSLNVPIIDEAGVIALLTEHGA 671


>gi|87199755|ref|YP_497012.1| DNA ligase, NAD-dependent [Novosphingobium aromaticivorans DSM
           12444]
 gi|123763512|sp|Q2G7J5|DNLJ_NOVAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|87135436|gb|ABD26178.1| DNA ligase, NAD-dependent [Novosphingobium aromaticivorans DSM
           12444]
          Length = 721

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 288/749 (38%), Positives = 418/749 (55%), Gaps = 67/749 (8%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
            AL+  +A  EL  L ++I+ H+  Y+    P I D+EYDAL RR   +  AFP L R  
Sbjct: 4   SALTEAEAANELMRLARQIAKHNRLYHAEDSPEITDAEYDALVRRNAELEAAFPHLIR-- 61

Query: 70  DPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            P+ P  +IG E+  S L KV H +  +SL+  +  E++ +F+ R+ RF    +D  +  
Sbjct: 62  -PDSPSAQIGHEIAASPLGKVQHEVRMMSLDNAFTDEEVEEFVARVRRFLALPEDAEVVM 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEI 184
           T E KIDG   ++RYE G+ V AA RGDG  GEDV+A +  IP IP+ L      +IP +
Sbjct: 121 TAEDKIDGLSCSLRYENGRLVRAATRGDGQVGEDVTANVAHIPDIPQELKAAGLFDIPAV 180

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
            E+RGEVY++K+DFLALN      G K +ANPRN A+G LR+ + +   +R L F  HG 
Sbjct: 181 FEIRGEVYMAKDDFLALNARQAEAGEKIFANPRNGAAGSLRQKDASVTASRPLRFLAHGW 240

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G  SE+ A  Q+EM++K+   G PV+  + + ++   +V++Y ++   R++LPYDIDG+V
Sbjct: 241 GAASEVPAATQFEMMRKIADWGVPVSPLLVRCSSAAEMVAHYRDIGEKRASLPYDIDGVV 300

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD    Q +LG  A++PRW I+HKF  ++A T L  IDIQ+GRTG LTPV RL+PV +
Sbjct: 301 YKVDRLDWQDRLGFVAKAPRWGIAHKFPAERAETTLDAIDIQVGRTGKLTPVGRLKPVLV 360

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TN TLHN D I  L            +RVGDR++++RAG+VIP+V  +    R  
Sbjct: 361 GGVTVTNVTLHNRDEIGRL-----------GLRVGDRIVLQRAGDVIPQV--VENLTREE 407

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
              P+ FP  CP C S  V +            RCTGGL C AQ++ERLKHFVSR A +I
Sbjct: 408 PRDPYHFPDHCPECGSEAVAEEGE------VDVRCTGGLICPAQRVERLKHFVSRAALDI 461

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG++ +  FF+       +  PADIF L++R+     +I    G+ D SV NL  +I 
Sbjct: 462 EGLGEKTIIEFFQ----LGWLESPADIFRLRKRRS----EIVGREGWKDKSVDNLLAAIE 513

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--------------------- 582
            +R     R +F LGIRHVGA  AR L K +++     +                     
Sbjct: 514 AKRQPDAARLLFGLGIRHVGAVTARDLMKRFVTLPALREAARQASSAAREGEPANADGAY 573

Query: 583 ---------EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
                    +     A  +D    L+ +  VG ++ +A+ +F+  P NI   E LL EVS
Sbjct: 574 DPATVTPDSDTAGAEAGRSDALADLLSIDGVGPVVVEALGDFFHEPHNIAVWEDLLSEVS 633

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
           P     E    S +  K +VFTG L+ + R +A+     LGA  +  +S KTD+++ G  
Sbjct: 634 PPPYVVE-TKDSAVAGKTIVFTGKLETMSRDEAKAQAEALGARTAGSVSAKTDLVVAGPG 692

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            GSKL++A  LG+ +++E  +  +++Q  
Sbjct: 693 AGSKLKQAAALGIDVIDEAAWAEIVRQAG 721


>gi|153826197|ref|ZP_01978864.1| DNA ligase [Vibrio cholerae MZO-2]
 gi|149740057|gb|EDM54226.1| DNA ligase [Vibrio cholerae MZO-2]
          Length = 669

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 387/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L+ L + +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+         ++  F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPSQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+        ++  +   G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+++LGIR VG   A +LA+++LS +   Q                I VP VG ++A 
Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+ 
Sbjct: 559 HLLAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|237807406|ref|YP_002891846.1| DNA ligase, NAD-dependent [Tolumonas auensis DSM 9187]
 gi|237499667|gb|ACQ92260.1| DNA ligase, NAD-dependent [Tolumonas auensis DSM 9187]
          Length = 686

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 253/718 (35%), Positives = 398/718 (55%), Gaps = 53/718 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + + +  + +L+Q +  ++  YY + +P + D+EYD L      +  A P      D N 
Sbjct: 1   MNEIQSRMHALQQLLERYNTEYYLHDEPSVPDAEYDRLMNELRELEAANPQWL---DVNS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    S   V H  P LSL+ ++N EDL  F  R+        +++I F  EPK
Sbjct: 58  PTQRVGGVALTSFGSVQHEQPMLSLDNVFNAEDLAAFGRRVQERL--LSNDAITFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE+G+ V AA RGDG +GED++  +R I  IP  LS +  P  IEVRGEV+
Sbjct: 116 LDGLAVSILYEQGELVRAATRGDGVTGEDITRNVRTIRVIPLRLSGDNIPARIEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS--EI 249
           + K  F   N++ +  G K +ANPRNAA+G LR+L+P     R L F+ + +G       
Sbjct: 176 MPKAGFERWNEQALVRGDKVFANPRNAAAGSLRQLDPAITAQRPLAFYAYAIGVVDEATE 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                Y  +Q ++  G PV + +RQ     G   Y++++ + R  LP++IDG+V+KVD  
Sbjct: 236 LPDSHYARMQYLKQFGLPVCDEIRQVVGVEGCQIYHDDILAKRDALPFEIDGVVFKVDTI 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+ LG  +R+PRW ++HKF  ++  TRL D++ Q+GRTG +TPVARLEPV +GG  ++
Sbjct: 296 AQQQMLGFVSRAPRWAVAHKFPAQEELTRLNDVEFQVGRTGAITPVARLEPVQVGGVTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D I  L            +++GD V+V+RAG+VIP++V+++++ R    +   
Sbjct: 356 NATLHNADEITRL-----------GVKIGDWVVVRRAGDVIPQIVNVVLDRRDASCRDID 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP+C S+V R          A  RC+GGL C+AQ+ E LKHFVSR A +I+G+G +
Sbjct: 405 FPERCPVCDSQVERLPGE------AVARCSGGLYCAAQRKEALKHFVSRRAMDIDGIGDK 458

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     E     +  PAD+F L + Q         +   G+ S   L +++   R  +
Sbjct: 459 LIEQLVDHE----LVHTPADLFALTKAQLLG------LERMGEKSADKLLNALQSARETT 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+F+LGIR +G   A++LA+++                      +L++V  VG+++A
Sbjct: 509 FARFLFALGIREIGETTAQTLAQHFSDLPALQDA----------SVETLLKVSDVGEVMA 558

Query: 610 QAIVEFYQNPRNICAVEALLK-------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           + I  F++   N+  ++ LL         +S          +  +  K LV TGTL ++ 
Sbjct: 559 KHIYYFFRQEHNLEVIQRLLAPISEGGAGISWQPVARVAVDALPLNGKTLVLTGTLSQLN 618

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R  A++ +  LGA V+  +S KTD++I G+  GSKLEKAQQLGV +  E++ + LLQ 
Sbjct: 619 RDAAKQALQALGAKVAGSVSAKTDLVIAGEAAGSKLEKAQQLGVPVWGEDELVALLQD 676


>gi|262165212|ref|ZP_06032949.1| DNA ligase [Vibrio mimicus VM223]
 gi|262024928|gb|EEY43596.1| DNA ligase [Vibrio mimicus VM223]
          Length = 682

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 244/716 (34%), Positives = 384/716 (53%), Gaps = 48/716 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E  ++    + L  L Q +  H   YY    P I D+EYD L R    +  A P+L    
Sbjct: 9   ERFTMSNVEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELI--- 65

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG        V H IP LSL+  ++  +L  F  R+             F 
Sbjct: 66  TPDSPSLRVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRI--PAVQQSHFC 123

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVR 188
            EPK+DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L  +   + +EVR
Sbjct: 124 CEPKLDGLAVSLLYENGVLTRAATRGDGATGENITENVRTINSIPLRLQGSDFPVRLEVR 183

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247
           GEV++ K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G   
Sbjct: 184 GEVFMPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIID 243

Query: 248 E-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
               A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KV
Sbjct: 244 GGELATSHYQRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKV 303

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+  LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG 
Sbjct: 304 DDIQLQERLGFVARAPRWAIAYKFPAQEELTILNDVEFQVGRTGAITPVAKLEPVFVGGV 363

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  DA+
Sbjct: 364 TVSNATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAK 412

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+CQS + R          A  RCTGGL C AQ+ E LKHFVSR A +++GL
Sbjct: 413 PIVFPACCPVCQSEIERIEGE------AVARCTGGLICQAQRKEALKHFVSRKAMDVDGL 466

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     +  PAD+F L+        ++  +   G  S  N+ D++NK +
Sbjct: 467 GDKVIEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAK 516

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RF+++LGIR VG   A +LA+++L+    AQ               LI VP VG 
Sbjct: 517 QTTLPRFLYALGIREVGEATALNLAQHFLTLDAIAQA----------SMDQLIEVPDVGG 566

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQR 663
           ++A  +  F+   RN   +  L++           +     S +  K +V TG+  ++ R
Sbjct: 567 VVASHLHAFFAQSRNQQVIAELIELGITWPAMAVASSIAADSALAGKVVVLTGSFTQLSR 626

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + A+  +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++++E+  +  L+
Sbjct: 627 NDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQVLDEQALIDFLK 682


>gi|319897423|ref|YP_004135620.1| DNA ligase, nad(+)-dependent [Haemophilus influenzae F3031]
 gi|317432929|emb|CBY81295.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3031]
          Length = 679

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 240/707 (33%), Positives = 389/707 (55%), Gaps = 45/707 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 10  MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 67  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVNRIEDRLILLP-KPLTFCCEPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RG+G +GED++A IR I  +P  L + N P  +EVRGEV+
Sbjct: 126 LDGLAVSILYVNGELTQAATRGNGTAGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 185

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   ++       +G+G    +  
Sbjct: 186 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 245

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++  
Sbjct: 246 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIG 305

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +++PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++N
Sbjct: 306 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 365

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           +I +GD V+++RAG+VIP+++ ++   R  +A+P  F
Sbjct: 366 ATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 414

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S+++R             RCTGGL C+AQ+ E LKHFVSR A +I+G+G + 
Sbjct: 415 PTNCPVCDSQIIRIEGET------VARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 468

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     I  PAD+F L        T +  +   G  S  N  +S+   ++ +L
Sbjct: 469 IEQLVDRE----LIHTPADLFKL------DLTTLTRLERMGAKSAENALNSLENAKSTTL 518

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGIR VG   A +LA ++ +                 +   L +VP VG+++A 
Sbjct: 519 ARFIFALGIREVGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVAN 568

Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I  F++   N+  VE L+ +         ++   +  ++K +V TGTL ++ R++A+  
Sbjct: 569 RIFIFWREAHNVAVVEDLITQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 628

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           + QLGA VS  +S KTD +I GD  G+KL KAQ+L + ++ EE+FL 
Sbjct: 629 LQQLGAKVSGSVSSKTDFVIAGDAAGAKLAKAQELNITVLTEEEFLA 675


>gi|229529935|ref|ZP_04419325.1| DNA ligase [Vibrio cholerae 12129(1)]
 gi|229333709|gb|EEN99195.1| DNA ligase [Vibrio cholerae 12129(1)]
 gi|327483693|gb|AEA78100.1| DNA ligase [Vibrio cholerae LMA3894-4]
          Length = 669

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 385/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L+ L + +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+    Q    ++  F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIQAVQHSA--FCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I  IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGMTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R  L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQFLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+        ++  +   G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+++LGIR VG   A +LA+++LS +   Q                I VP VG ++A 
Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+ 
Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|85059656|ref|YP_455358.1| NAD-dependent DNA ligase LigA [Sodalis glossinidius str.
           'morsitans']
 gi|123766419|sp|Q2NSC2|DNLJ_SODGM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|84780176|dbj|BAE74953.1| DNA ligase [Sodalis glossinidius str. 'morsitans']
          Length = 678

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 251/720 (34%), Positives = 404/720 (56%), Gaps = 51/720 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQ  + +  L +++ + +  YY  + P + DSEYD        +    PDL  +   + 
Sbjct: 1   MEQIEQHILRLRKQLRHWEYLYYVEAAPEVPDSEYDRFMAELRTLEAERPDLLTA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG+   S  +V H +P LSL+ ++       F  R+    ++ DD  + +  E K
Sbjct: 58  PSQRVGGQAQSSFGQVRHEVPMLSLDNVFEEPGFLAFDKRVRDRLKRDDD--MTYCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI--PEIIEVRGEV 191
           +DG  +++ YE G+ V AA RGDG +GED++A +R I TIP  L  +   P ++E+RGEV
Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGATGEDITANVRTIRTIPLRLQDHDNLPRLLEIRGEV 175

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEI 249
           ++S+  FL LN+     G K +ANPRNAA+G LR+L+P+    R L F+ +G+G      
Sbjct: 176 FMSEAGFLRLNETAKREGSKVFANPRNAAAGSLRQLDPSITARRPLTFYCYGVGLLEDGE 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +  +E LQ+ +  G PV++ VR+      ++ +Y ++   R +L +DIDG+V KVD  
Sbjct: 236 LPESHWERLQQFKAWGVPVSDRVRRCTGSAAVLDFYRQVHEARLSLGFDIDGVVIKVDSL 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  AR+PRW I++KF  ++  TR+ D++ Q+GRTG +TPVARLEPV + GA+++
Sbjct: 296 ALQQRLGFVARAPRWAIAYKFPAQEQLTRVRDVEFQVGRTGAITPVARLEPVLVSGAMVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D ++ L            + +GD V+V+RAG+VIP++V ++ +ER  + +P +
Sbjct: 356 NATLHNADEVERL-----------GLMIGDTVIVRRAGDVIPQIVGVVTSERPAEVRPVA 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C S V R          A  RCT GL C+AQ+ E LKHFVSR A +I+G+G +
Sbjct: 405 FPTQCPVCSSDVERVEGE------AVLRCTAGLVCAAQRKEALKHFVSRRAMDIDGMGDK 458

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D   + E     ++ PAD+F L +        +  +   G  S  NL +++ K R  +
Sbjct: 459 IIDQLVERE----LVKTPADLFRLNKE------ILTRLDRMGSKSAQNLLEALEKARQTT 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+++LGIR VG   A +LA  Y +                 D  SL  V  +G+I+A
Sbjct: 509 FARFLYALGIREVGEATAVNLAAAYGTLDALIAA----------DIDSLTGVQDIGNIVA 558

Query: 610 QAIVEFYQNPRNICAVEALLK-EVSP----SIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
             +  F++   NI  ++ LL   +       +        +    K +V TG+L  + R 
Sbjct: 559 THVRHFFEETHNIEVIQDLLSPAIGIRWPEPVAAPVAASDNPFAGKTIVLTGSLSSLSRD 618

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A++++  LGA VS  +S KTD++I G+  GSKL KAQQL + +M+E + + LL + +  
Sbjct: 619 EAKDHLVALGARVSGSVSAKTDLLIAGEAAGSKLSKAQQLNIPVMDEAEMMRLLGESSDA 678


>gi|307152955|ref|YP_003888339.1| NAD-dependent DNA ligase [Cyanothece sp. PCC 7822]
 gi|306983183|gb|ADN15064.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7822]
          Length = 682

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 225/717 (31%), Positives = 377/717 (52%), Gaps = 53/717 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++ +  L  E+      YY    PI+ D+ YD L R  + +   +P+L     P+ P 
Sbjct: 7   EIQQRVEQLRSELQKASYAYYVLDNPIMEDAVYDQLYRELENLETQYPELI---TPDSPT 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +++     V H IP  SLE  +N+E+  ++  R  R     +     +  E KID
Sbjct: 64  QRVGDKLSEQFTSVKHHIPLYSLENAFNLEEFTRWQERWQRI--APETKQFEYVCELKID 121

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYIS 194
           G+ I + YE G  V    RGDG  GE+++  I+ I +IP    S + P  +EVRGE ++ 
Sbjct: 122 GSAIALTYENGLLVRGVTRGDGVVGEEITQNIKTIRSIPLRLQSDHPPARVEVRGEAFLP 181

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT----RYLNFFVHGLGKTSEIF 250
             +F  +N E  A G   +ANPRNAA+G LR+L+P  +     ++  + ++ +   ++ +
Sbjct: 182 VEEFERINQEKAATGESLFANPRNAAAGTLRQLDPKIVDRRRLQFFAYTLYIVDTENQSY 241

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q+E L+ ++ +GF VN   +   +   +  YY    + R  LPY  DG+V K++++ 
Sbjct: 242 PQTQWESLEFLQKIGFLVNPNRKLCQSLEDVEQYYQHWDTRRRNLPYMTDGVVVKINDYD 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQKQLG   + PRW I+ K+A ++A TR+ +I + +GRTG +TP+A +EPV + G  +  
Sbjct: 302 LQKQLGFTQKFPRWAIALKYAAEEAPTRVKNITVNVGRTGAVTPMAIMEPVQLAGTTVQK 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D +  L           DIRVGD V++++AGE+IP+VV +I   R  + QP+  
Sbjct: 362 ATLHNSDRVAQL-----------DIRVGDTVIIRKAGEIIPEVVRVISELRPANTQPYQM 410

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR          A  RC    +C A     L H+ SRDA +I GLG++ 
Sbjct: 411 PTHCPECNSTLVRPKGE------AVTRCVNS-SCPAILRGSLVHWCSRDALDIRGLGEKV 463

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +    ++E     ++   D++ L+  Q  S      +   G  S  NL ++INK +    
Sbjct: 464 VILLIENE----LVKSIVDLYGLKAEQIAS------LERMGTKSANNLVNAINKSKQQPW 513

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R ++ LGIR+VG   A+ L   + + +  ++            + SL  V  +G  IAQ
Sbjct: 514 SRVLYGLGIRYVGNVTAKILTDNFPTVEQLSRA----------SFASLESVYGIGSEIAQ 563

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI-----GRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++ ++++   N+  V+ L +               ++  + ++ K  V TGTL  ++R++
Sbjct: 564 SVSDWFKIEANLTLVKQLQQAGLQFETATVTKNTSESTPTPLKGKTFVITGTLPSLKRNE 623

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           AQ+ + + G  V+  +S KTD ++VG++ GSKL KAQQLG+  ++EE  L ++Q  N
Sbjct: 624 AQQLIEEAGGKVTGSVSAKTDYLVVGEDAGSKLAKAQQLGIIQLSEEALLAMIQGKN 680


>gi|126659779|ref|ZP_01730906.1| NAD-dependent DNA ligase LigA [Cyanothece sp. CCY0110]
 gi|126618931|gb|EAZ89673.1| NAD-dependent DNA ligase LigA [Cyanothece sp. CCY0110]
          Length = 677

 Score =  554 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 235/709 (33%), Positives = 374/709 (52%), Gaps = 47/709 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
             + ++ L Q++   +  YY    PI+ D+ YD L R  D +    P L     P+ P  
Sbjct: 8   VEQRVTQLRQQLQKANYAYYVLDDPIMEDAVYDQLYRELDNLEKEHPQLI---TPDSPTQ 64

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G +       VTH+IP  SLE  +N+++L+ +  R  R+ +K+D ++I +  E KIDG
Sbjct: 65  RVGDKPASQFVSVTHNIPLYSLENAFNLDELKAWKNRWQRYSEKEDLDTIEYVCELKIDG 124

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISK 195
           + + + YE G  +    RGDG +GED++  IR I +IP  L+  N P +IEVRGE ++  
Sbjct: 125 SALALTYENGLLIRGVTRGDGTTGEDITQNIRTIRSIPLKLNLDNPPPMIEVRGEAFLPL 184

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
           ++F  +N E    G   +ANPRNAA+G LR+L+P  + +    F        E     Q+
Sbjct: 185 DEFDRINQEREEKGEALFANPRNAAAGTLRQLDPKIVDQRRLQFFAYTLHLEETEISSQW 244

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + L  ++  GF VN   +   +   +  Y+ + ++ R  LPY  DG+V K++++SLQK L
Sbjct: 245 QSLNYLQNSGFLVNPHRKLCQSLDEVADYFKQWETARKDLPYMTDGVVVKINDYSLQKAL 304

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   + PRW I+ K+  ++A T + DI + +GRTG +TP+A ++PV++ G  +  ATLHN
Sbjct: 305 GFTQKFPRWAIALKYPAEEAPTIVKDIIVNVGRTGAVTPMAVMKPVHLAGTTVQKATLHN 364

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I  L           DIRVGD V++++AGE+IP+VV ++   R PD QP+  P  CP
Sbjct: 365 SDRISQL-----------DIRVGDTVIIRKAGEIIPEVVRVLKELRPPDTQPYEMPDRCP 413

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S ++R          A  RC   L+C+A     L H+ SRDA +I GLG++ +    
Sbjct: 414 ECNSLLIRPPEE------AVLRCMN-LSCNAILKGSLVHWSSRDALDIRGLGERIVVLLI 466

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
            +E     +   AD++ L         KI N+   G  S  NL  +I   +     R ++
Sbjct: 467 DNE----LVNSIADLYYLTPE------KIANLERMGSKSADNLIKAIEGSKQQPFSRVLY 516

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIR+VG+  A  L + +LS    +Q            + SL  V  VG  IAQ+I+++
Sbjct: 517 GLGIRYVGSVTANLLTENFLSIDQLSQA----------SFTSLCSVYGVGGEIAQSIIDW 566

Query: 616 YQNPRNICAVEALLK---EVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYV 670
           +   +N   ++ L K   ++  +        SS   +  K  V TGTL  + R +A+  +
Sbjct: 567 FSIQKNYDLIQQLKKVGLQLEITSSEKNTVESSLTPLSGKTFVITGTLPTLNRTEAKTLI 626

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G  V+  +S+KTD +++G+N GSKL KAQ+LG+  ++E   L  LQ
Sbjct: 627 EKAGGKVTGSISKKTDYLLLGENAGSKLIKAQELGITQLSEADLLAFLQ 675


>gi|83590843|ref|YP_430852.1| DNA ligase, NAD-dependent [Moorella thermoacetica ATCC 39073]
 gi|123739230|sp|Q2RGY0|DNLJ_MOOTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83573757|gb|ABC20309.1| DNA ligase, NAD-dependent [Moorella thermoacetica ATCC 39073]
          Length = 666

 Score =  554 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 254/711 (35%), Positives = 371/711 (52%), Gaps = 47/711 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + +  AR+ +  L + I  H+  YY   +P I D EYDAL +   A+  A+P+L     P
Sbjct: 1   MDLAAARQRVEELRRLIEEHNYRYYVLDQPSISDREYDALMQELIALEEAYPEL---RTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       +V H    LSL   +N  DL +F  R+     +     + + +E
Sbjct: 58  DSPSQRVGGAPREEFNQVRHPQVLLSLNDAFNEGDLLEFDRRVRDLAGR----PVEYVIE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + + Y  G F   A RGDG  GE+V+A ++ IP    +        + VRGEV
Sbjct: 114 AKIDGLAVALTYRDGLFTLGATRGDGQVGEEVTANLKTIP-ALPLRLRRPLPFLVVRGEV 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K  F ALN      G   +ANPRNAA+G LR+L+P    +R L+ FV+ +   +   
Sbjct: 173 YMPKVAFTALNAAREEAGEPLFANPRNAAAGSLRQLDPKITASRSLSLFVYQVISLTGAE 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVYKVDEF 309
              Q   L  +  LGFPVN     A     ++         R    PY+IDGLV KV++ 
Sbjct: 233 VATQAGALDFLAELGFPVNPYRVVAPDIQAVLEEVKAWTPERRASLPYEIDGLVIKVNDL 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +L   LG  A++PRW +++KF  +QA+ R+  I +++GRTG+LTP A L PV + G  ++
Sbjct: 293 ALHSVLGATAKAPRWAMAYKFPAEQATARVEGIILRVGRTGVLTPTAVLTPVRLAGTTVS 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNEDYI+            +DIR+GD V+V++AG++IP+VV +I   R    + F+
Sbjct: 353 RATLHNEDYIR-----------EKDIRIGDTVIVQKAGDIIPEVVAVIPERRTGSEEVFT 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C + VVR          AAHRCTGGLAC AQ LE + HF SR A +I+GLG  
Sbjct: 402 MPERCPACGAAVVRPPGE------AAHRCTGGLACPAQVLEGIIHFASRGAMDIQGLGPA 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +    +    A  I   AD++ L+            +  FG  S +NL  +I   +   
Sbjct: 456 IVAQLLE----AGLIHDAADLYYLKEEDL------LKLERFGQQSASNLLAAIAASKKQP 505

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LER IF+LGIR+VG   AR LA ++ S    A                L  +P +G  IA
Sbjct: 506 LERLIFALGIRNVGQRAARVLADHFGSLDKLAAAT----------VEELTALPDIGPRIA 555

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           + I EF+  PRN   +E L K        +    +  +  K  V TGTL  + R +A+E 
Sbjct: 556 ENIREFFGEPRNRAVLEKLKKAGVRLEALNAAAPAGPLTGKVFVLTGTLPGMTRQEAEEL 615

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +T+ G  VS+ +SRKTD ++ G+ PGSKL++A++LGV ++N +    LL+Q
Sbjct: 616 ITRAGGKVSSSVSRKTDYVVAGEKPGSKLDRARELGVPVINADGLRQLLRQ 666


>gi|90579891|ref|ZP_01235699.1| DNA ligase [Vibrio angustum S14]
 gi|90438776|gb|EAS63959.1| DNA ligase [Vibrio angustum S14]
          Length = 670

 Score =  554 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 252/696 (36%), Positives = 396/696 (56%), Gaps = 47/696 (6%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
            YH   YY    P I D+EYD + ++   I    P+       + P  ++GG       +
Sbjct: 17  DYHGHRYYVEDNPEIPDAEYDRMMQQLIKIEADHPEWITV---DSPSQRVGGAALEGFTQ 73

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H I  LSL+  +N +DLR F  R+    +     ++ +  EPK+DG  +++ YE G  
Sbjct: 74  VKHEIAMLSLDNAFNDDDLRAFQKRLQDRLRS--GATLSYCCEPKLDGLAVSLMYENGVL 131

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GE+++  +R I  IP  L  +  PE +EVRGEV++ K  F ALN + + 
Sbjct: 132 VQAATRGDGATGENITHNVRTIRAIPLKLQGDDWPERLEVRGEVFMPKKGFEALNAKALK 191

Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFAKGQYEMLQKMRCLG 265
            G K +ANPRNAA+G LR+L+P    TR L+F+ + +G       A  QYE L +++  G
Sbjct: 192 KGDKAFANPRNAAAGSLRQLDPKITATRPLSFYAYAVGVVDGRELANTQYERLCQLKAWG 251

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
            P+   +R+ ++   ++SY+  +   R +L Y+IDG+V KVD+   Q+QLG  AR+PRW 
Sbjct: 252 LPMCPEIRKVDSIEDVISYHQSIGEKRQSLGYEIDGVVIKVDDVDTQQQLGFVARAPRWA 311

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++NATLHN D +  L   
Sbjct: 312 IAYKFPAQEEMTILNNVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEVARL--- 368

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                    + +GD V+++RAG+VIP++  ++ + R  +AQ   FP+ CP+CQS+V R  
Sbjct: 369 --------GVMIGDTVIIRRAGDVIPQIASVVESRRPENAQAIVFPTECPVCQSKVERIE 420

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                   A  RCTGGL C AQ+ E LKHFVSR A +++G G++ ++     E     + 
Sbjct: 421 GE------AVARCTGGLFCQAQRKEALKHFVSRKALDVDGCGEKVIEQLVDRE----MVT 470

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
            PAD+F      + S  ++  +   G  S   L D++N  +  +L RFI SLGIR VG  
Sbjct: 471 TPADLF------KFSAGEVTVLERMGPKSAQKLVDALNASKLTTLPRFIHSLGIREVGEA 524

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A +LA Y+ + ++ +Q               LI VP VGDI+A  I  F++   N+  V
Sbjct: 525 TAANLANYFETLESISQATK----------EQLIEVPDVGDIVAAHIFNFFREEHNMVVV 574

Query: 626 EALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
             L +     P I + +++V   ++ K +V TG+L ++ R  A+  + +LGA V+  +S+
Sbjct: 575 NELQEVGIHWPEIEKRDEDVELPLDGKVVVLTGSLSQLTRSDAKAALQKLGAKVTGSVSK 634

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           KTD+++ G+  GSKL KAQ+LG++I +E++ + L+ 
Sbjct: 635 KTDLLVAGEAAGSKLTKAQELGIEIWDEQKLVDLMA 670


>gi|15640987|ref|NP_230618.1| NAD-dependent DNA ligase LigA [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|153822692|ref|ZP_01975359.1| DNA ligase [Vibrio cholerae B33]
 gi|229510900|ref|ZP_04400379.1| DNA ligase [Vibrio cholerae B33]
 gi|229518021|ref|ZP_04407465.1| DNA ligase [Vibrio cholerae RC9]
 gi|229608449|ref|YP_002879097.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MJ-1236]
 gi|254291846|ref|ZP_04962629.1| DNA ligase [Vibrio cholerae AM-19226]
 gi|254848101|ref|ZP_05237451.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MO10]
 gi|255744753|ref|ZP_05418704.1| DNA ligase [Vibrio cholera CIRS 101]
 gi|262151242|ref|ZP_06028378.1| DNA ligase [Vibrio cholerae INDRE 91/1]
 gi|81545212|sp|Q9KTD1|DNLJ_VIBCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|9655431|gb|AAF94133.1| DNA ligase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126519773|gb|EAZ76996.1| DNA ligase [Vibrio cholerae B33]
 gi|150422206|gb|EDN14170.1| DNA ligase [Vibrio cholerae AM-19226]
 gi|229344736|gb|EEO09710.1| DNA ligase [Vibrio cholerae RC9]
 gi|229350865|gb|EEO15806.1| DNA ligase [Vibrio cholerae B33]
 gi|229371104|gb|ACQ61527.1| DNA ligase [Vibrio cholerae MJ-1236]
 gi|254843806|gb|EET22220.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MO10]
 gi|255737784|gb|EET93178.1| DNA ligase [Vibrio cholera CIRS 101]
 gi|262030933|gb|EEY49561.1| DNA ligase [Vibrio cholerae INDRE 91/1]
          Length = 669

 Score =  554 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 241/711 (33%), Positives = 386/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L+ L + +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+         ++  F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+        ++  +   G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+++LGIR VG   A +LA+++LS +   Q                I VP VG ++A 
Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+ 
Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TD++  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 619 ALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|301063517|ref|ZP_07204049.1| DNA ligase (NAD(+)) [delta proteobacterium NaphS2]
 gi|300442456|gb|EFK06689.1| DNA ligase (NAD(+)) [delta proteobacterium NaphS2]
          Length = 671

 Score =  554 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 245/712 (34%), Positives = 389/712 (54%), Gaps = 50/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E++R+E+  L+Q+I YH+  YY    P I D++YD L +R   +    P+L     P+ 
Sbjct: 1   MEKSRQEIDELKQKIEYHNHRYYVLDDPEIPDADYDRLFQRLLELETKHPEL---RSPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+GGE      +V H  P LSLE  ++ + +  F  R+ +F    DD  + +T+EPK
Sbjct: 58  PTRKVGGETKSGFSRVIHRSPMLSLENCFDPQQILDFDKRVRKFLG--DDAPVQYTVEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-----RVLSLNIPEIIEVR 188
           IDG  + + Y++G+   A+ RGDG  GEDV+  I+ I  +P     R  SL IP+++EVR
Sbjct: 116 IDGLAVELVYKEGRLSVASTRGDGRVGEDVTRNIKTILNVPLKLVTRKQSLPIPDLLEVR 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247
           GEVY+    FL LN+   A     +ANPRNAA+G LR+L+      R L+ F +G+G   
Sbjct: 176 GEVYMDVAAFLKLNEHRAARNESLFANPRNAAAGSLRQLDSRITARRRLDIFCYGVGNAE 235

Query: 248 EIFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +  K   E++  ++  G       +   +T   +VS    ++  R   PY+IDG V KV
Sbjct: 236 GLSFKTHLEVMMALQHWGLRVNRPHITICDTPDAVVSGCRHIEETRGLFPYEIDGAVIKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +   LQ +LG ++RSPRW +++KFA  Q  T +L I +Q+GRTG LTPVA+L PV +GG 
Sbjct: 296 NRLDLQFRLGMKSRSPRWAMAYKFAPTQEMTTVLGIHVQVGRTGALTPVAQLAPVELGGV 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++ ATLHN++ I             +DIR GD+V+V+RAG+VIP+VV  + ++R  + +
Sbjct: 356 LVSRATLHNQEEIDR-----------KDIREGDQVIVQRAGDVIPEVVKTVFSKRTGNEK 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  P  CP C + +++       +          + C AQ    ++HFVS+   +I+GL
Sbjct: 405 KFLMPEACPACGTAIIKKSGEVVAR-------CPNVNCPAQVRGSIRHFVSKGGMDIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ ++           ++  AD++ L R           +    + S  NL  +I K +
Sbjct: 458 GEKLVNKLLDK----GLVKDEADLYELTRADLLG------LDNIKEKSAANLLGAIEKSK 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             SL RFI++LGIRHVG   A  L++ + + ++           +N    +L  +  VG 
Sbjct: 508 APSLGRFIYALGIRHVGEFTAALLSERFGNIESL----------SNAGLEALSAIDGVGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            IA+++  ++ +P+N   +E L K     +    K   + +  K  V TGTL  ++R +A
Sbjct: 558 QIAESVFNYFADPQNRALLERLFKAGVTPVSTRLKPADTPVAGKTFVLTGTLASVKRSEA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +E +TQ G    + +SR TD ++ GD PGSKL+KA++L V I+NE++FL LL
Sbjct: 618 KEMITQKGGKAGSSVSRNTDYLVAGDEPGSKLQKARELDVAILNEKEFLDLL 669


>gi|145298235|ref|YP_001141076.1| NAD-dependent DNA ligase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|166215387|sp|A4SKA6|DNLJ_AERS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|142851007|gb|ABO89328.1| NAD-dependent DNA ligase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 664

 Score =  554 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 244/708 (34%), Positives = 384/708 (54%), Gaps = 47/708 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +       L   ++ +   YY    P + D+EYD L R   AI    P+L  S     
Sbjct: 1   MSETLSRHRQLCDLLTEYGHQYYVLDNPTVPDAEYDRLMRELIAIESEHPELKTSA---S 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG+   +  +V H IP LSL+ +++ E+L+ F  R+    +++   S  F  EPK
Sbjct: 58  PSVRVGGQPLTAFRQVRHEIPMLSLDNVFSSEELQAFEQRMKDRLKREI--SFTFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ Y  G+ V AA RGDG +GE+++  +R I  IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYVDGQLVQAATRGDGATGEEITENVRTIKAIPLSLRGSDWPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFA 251
           + K  F A+N + +A G K + NPRNAA+G LR+L+     +R LNF+ +G+G   +   
Sbjct: 176 MPKAGFEAMNAKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLNFYAYGVGVGGDQLG 235

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              +  L +++  G P++  V+      G  ++++++ + R  L Y+IDG+VYKVD   L
Sbjct: 236 DSHFGRLCQLKAWGLPMSPEVKLKEGAAGCQAFHDDILARRGELAYEIDGVVYKVDAIPL 295

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  AR+PRW  +HKF  ++  T L +++ Q+GRTG +TPVA+L+PV +GG  I+NA
Sbjct: 296 QEELGFVARAPRWATAHKFPAQEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTISNA 355

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I+ L            + +GD V+V+RAG+VIP++V ++  +R  DA+   FP
Sbjct: 356 TLHNADEIERL-----------GVMIGDTVIVRRAGDVIPQIVAVVEAQRPVDAREILFP 404

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C S + R             RC+GGL C AQ+ E +KHF +R A +++GLG + +
Sbjct: 405 TQCPVCGSALERLEGE------VVTRCSGGLFCEAQRKEAIKHFAARRAMDVDGLGDKIV 458

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +           ++ PAD+F+L   Q         +   G  S  NL  +I+  R+ +L 
Sbjct: 459 EQLVDK----GLVKTPADLFSLNAIQLAG------LERMGQKSALNLVAAIDAARSTTLP 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF+F+LGIR VG   A +LA ++L+                     L+ V  VGDI+A+ 
Sbjct: 509 RFLFALGIREVGEATALNLANHFLTLDALRAA----------SVEQLLEVADVGDIVAKH 558

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +  F + P NI     L   +       ++        K  V TGTL  + R+ A+  + 
Sbjct: 559 VYYFLRQPHNIEV---LAAGIHWPAIEKKEASEQPFAGKTFVLTGTLNLLSRNDAKAALQ 615

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            LGA V+  +S KTD+++ G+  GSKL KAQ+LG+ I  EEQ    LQ
Sbjct: 616 ALGAKVAGSVSAKTDVLVAGEAAGSKLAKAQELGITIWTEEQLQAALQ 663


>gi|229523238|ref|ZP_04412645.1| DNA ligase [Vibrio cholerae TM 11079-80]
 gi|229339601|gb|EEO04616.1| DNA ligase [Vibrio cholerae TM 11079-80]
          Length = 669

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 241/711 (33%), Positives = 386/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L+ L + +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+         ++  F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ Y+ G    AA RGDG +GE+++  +R I +IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYQNGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLVYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+        ++  +   G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+++LGIR VG   A +LA+++LS +   Q                I VP VG ++A 
Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+ 
Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|294497111|ref|YP_003560811.1| DNA ligase, NAD-dependent [Bacillus megaterium QM B1551]
 gi|294347048|gb|ADE67377.1| DNA ligase, NAD-dependent [Bacillus megaterium QM B1551]
          Length = 668

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 241/715 (33%), Positives = 388/715 (54%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A+  +  L   ++ +   YY   +P + D+EYD L      I  +FP+L  +   
Sbjct: 1   MEFETAKSRVQELRDLLNQYGYEYYVLDQPSVPDAEYDKLMNELIEIEESFPELKTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IGG++  +  KV H    LSL   +N EDLR F  R+ +       +   +  E
Sbjct: 58  DSPTQRIGGQVLDAFEKVQHQTSMLSLGNAFNEEDLRDFDRRVRQAVG----DEFSYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G  V  A RGDG +GE+++  ++ I +IP  +   +   +EVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGYLVLGATRGDGTTGENITENLKTIRSIPLRIKEPLS--MEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           ++ +  F ALN+  +     P+ANPRNAA+G LR+L+P     R L+ FV+ +  T E+ 
Sbjct: 172 FMPRKSFEALNEAKMERDEVPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYAMTDTGELE 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   +   T   +++Y    ++ R  L YDIDG+V KVD F 
Sbjct: 232 IDSHSESLNLLDELGFKTNRERQTCETIDDVIAYIESWQTQRPELSYDIDGIVVKVDSFD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  A+SPRW I++KF  ++  T+L++I++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 QQAELGTTAKSPRWAIAYKFPAEEVVTKLVNIELTVGRTGVITPTAILEPVQVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I  +R  + Q F+ 
Sbjct: 352 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIEEKRTGEEQEFTM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC    +C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTHCPECESELVRLEGE------VALRCINP-SCPAQIREGLIHFVSRNAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+ +     I+  ADI+TL ++Q         +   G+ S  NL  +I   +  SL
Sbjct: 454 ISQLFREQ----LIKDVADIYTLTKQQLI------ELERMGEKSADNLIAAIGASKKNSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ A++LA+++ +     +            +  L+ +  +G  +A 
Sbjct: 504 ERLLFGLGIRHVGAKAAKTLAQHFETIDKLTKAT----------YDELVAINEIGAKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           AIV ++        +  L +       +       +NV S    K +V TG L+++ R++
Sbjct: 554 AIVAYFTQEEVQELIHELKEYGVNLTYKGPKLVSVENVDSVFAGKTVVLTGKLEQLSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  V+  +S+KTD+++ G+  GSKL KA +L +++ +E + L  L +
Sbjct: 614 AKAQIEALGGKVTGSVSKKTDLVVAGEEAGSKLTKANELEIEVWDEARLLTELNK 668


>gi|296046585|gb|ADG86434.1| NAD-dependent DNA ligase [Francisella novicida]
          Length = 670

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 248/717 (34%), Positives = 388/717 (54%), Gaps = 53/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++    + E+  L   I+ H+  YY    P I D+EYD L +R   +   +P        
Sbjct: 1   MTP--IQTEMDQLTHTINQHNIRYYVDDAPSIPDAEYDRLIKRLTELERDYPQFK---SV 55

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       ++TH  P LSL+  +   D   F  RI         +S+ +  E
Sbjct: 56  DSPTQRVGGIALQKFAQITHLKPMLSLDNAFEQADFAAFNKRITDKV-----DSVDYVCE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  ++I Y  G    AA RGDG  GED++A +R I +IP  L     P+++EVRGE
Sbjct: 111 PKLDGLAVSITYRFGVLERAATRGDGSVGEDITANVRTIRSIPLKLRGEGFPDLVEVRGE 170

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V++ K  F ALN   I+ G K + NPRNAA+G LR+L+     +R L F+ + LG     
Sbjct: 171 VFMPKAAFEALNQRQISKGDKVFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEGE 230

Query: 250 FAKGQYEML---QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
               Q        +++  G PV++ V+  +    + +YY ++ + RS L Y+IDG+V KV
Sbjct: 231 SQPMQTSHYGQLTQLQQWGIPVSSEVKVTDLLEKVYAYYADIMARRSALEYEIDGVVIKV 290

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ + Q+ LG  A++PRW I++KF  ++  T L  +D Q+GRTG +TPVARL+P+ +GG 
Sbjct: 291 NDIAKQQTLGFVAKAPRWAIAYKFPAQEEMTLLESVDFQVGRTGAVTPVARLKPIFVGGV 350

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN D I  L            +++GD V+++RAG+VIP++V I+  +R  DAQ
Sbjct: 351 TVSNATLHNADEIARL-----------GVKIGDTVIIRRAGDVIPQIVAIVPEKRPDDAQ 399

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              FP  CP+CQS V R          A  RC+GGL C AQ+ E +KHF SR A NI+G+
Sbjct: 400 DIIFPLHCPVCQSIVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALNIDGM 453

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++     E     ++ PAD+F+L        + I  +      S TN+  +I   +
Sbjct: 454 GDKIVEQLIDKE----LVKTPADLFSLTA------SSITMLDRMAMKSATNIVAAIKHAK 503

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RF++SLGIR VG   A +LA+++  ++                   L+ V  VGD
Sbjct: 504 ATTLARFLYSLGIREVGEATAANLAQHFAEFERIRTA----------SVEQLLEVADVGD 553

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHK 665
           I+A+ I +F+  P NI  +E LL+         + + S   ++ +  V TGTL ++ R+ 
Sbjct: 554 IVAKHIRQFFAQPHNIEVIEQLLEAGITWPVIEQADESQLSLKGQTWVLTGTLTQLNRND 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A+  +  LGA V+  +S+ TD ++ G+  GSKL KA++LGVK+++E+  + LL   N
Sbjct: 614 AKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAEELGVKVIDEQALMDLLNAAN 670


>gi|27262356|gb|AAN87459.1| NAD-dependent DNA ligase [Heliobacillus mobilis]
          Length = 677

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 236/708 (33%), Positives = 373/708 (52%), Gaps = 48/708 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A   +  L + I +H+  YY    P I D++YDAL R   AI   +P+L  +   + P 
Sbjct: 16  EAEVRVKELREIIRHHEYRYYVLDAPEITDADYDALMRELQAIEDTYPELVEA---DSPT 72

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG+   +   V H +P LSL   ++  DLR+F  R      +     + + +EPKID
Sbjct: 73  RRVGGQPLAAFNSVRHRVPLLSLANAFDEHDLREFDRRARERAGR----DLTYVVEPKID 128

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + YE+G+FV  A RGDG +GED++  ++ I TIP  L      +++VRGE Y+ K
Sbjct: 129 GLTVVLTYEQGRFVRGATRGDGETGEDITENLKTIRTIPLRL-KTDLPVLDVRGEAYLPK 187

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN+E    G   +ANPRNAA+G LR+L+P    +R L  F + +       A+ Q
Sbjct: 188 GAFATLNEEREERGEPVFANPRNAAAGSLRQLDPKVTASRPLRAFFYNILLLEGAEAQEQ 247

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            + L+ +   G PVN   +   +   +++Y       R  LP++IDG+V KV+E    ++
Sbjct: 248 RQALELIEQWGLPVNKERKFCLSIEEVIAYCRYWTEHRHDLPFEIDGMVVKVNELDEYER 307

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++SPR+ I+ KF  +QA T++  I +++GRTG++TP A LEPV + G  ++ ATLH
Sbjct: 308 LGVTSKSPRYAIAFKFPAEQAVTQVRSITVKVGRTGVITPTAELEPVRVAGTTVSRATLH 367

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED I+            +DI VGD V++++AG++IP+VV ++   R  + QPFS P  C
Sbjct: 368 NEDIIR-----------EKDIHVGDYVIIQKAGDIIPEVVSVLKERRTGEEQPFSMPQAC 416

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S   R           A RCT    C AQ  E L H+ SRDA NIEGLG   ++  
Sbjct: 417 PECGSPASRLEGE------VALRCTSS-TCPAQAKEGLIHYASRDAMNIEGLGPAIVNLL 469

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           + +      +  PAD++ L   Q         +   G  S  NL  +I + ++  L  F 
Sbjct: 470 WDT----GLVHNPADLYDLTVDQV------APLERMGKKSAANLIAAIEQSKSRGLAAFT 519

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LG+R VG   A++LA ++ S +                   L  +P +G  +A ++  
Sbjct: 520 FALGLRLVGQTAAKTLASHFGSMEKLMAATQ----------EELQAIPEIGPKMADSLKN 569

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           ++  P N+  +  L+++      +    +    +  K +V TGTLQ + R +AQ  +   
Sbjct: 570 YFSIPANVEMILRLVEKGVQMNAQQSTVDSPQTLAGKMIVLTGTLQSMDRREAQRLLEAR 629

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           GA +S+ +S+KT ++I G+  GSKLEKA +L V ++ EE FL L+  +
Sbjct: 630 GAKISSSVSKKTSMVIAGEEAGSKLEKALELKVPVLREEDFLKLIDHH 677


>gi|293603951|ref|ZP_06686365.1| NAD-dependent DNA ligase LigA [Achromobacter piechaudii ATCC 43553]
 gi|292817644|gb|EFF76711.1| NAD-dependent DNA ligase LigA [Achromobacter piechaudii ATCC 43553]
          Length = 700

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 259/724 (35%), Positives = 392/724 (54%), Gaps = 68/724 (9%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
           + L  E+  H+  YY Y +P I D+EYD L R+ +A+    P+L     P  P  ++G  
Sbjct: 15  AHLRAELEQHNVRYYVYDEPSISDAEYDGLMRQLEALEAEHPELI---TPESPTQRVGAA 71

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ----KKDDNSIFFTLEPKIDGT 137
              +   V+H++P LSL   +  E++  F  R+    +            +  E K+DG 
Sbjct: 72  PVSAFGSVSHAVPMLSLNNAFAEEEVVAFDRRVTDTLRGAGLLGPAQQADYFCELKLDGL 131

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++RYE G+ V AA RGDG +GEDV++ IR I  IP  L    P+++EVRGEV +++ D
Sbjct: 132 AISLRYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLKGAAPKVLEVRGEVLMNRAD 191

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS--------- 247
           F  LN+       K + NPRNAA+G LR+L+P     R L FF +G G+           
Sbjct: 192 FEKLNEAQARRDEKIFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEVQGLPGKQSGL 251

Query: 248 ------------EIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRST 294
                       ++  K    ML  +  LG PVN     +A    G++++Y ++  +R++
Sbjct: 252 FDEATAGAGQASQLPEKSHGAMLAWLHELGLPVNLKHNDRATGAEGLMAFYAKVGELRAS 311

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LPYDIDG+VYKVD    QK LG  AR+PR+ ++HKFA ++A+T LLDI++Q+GRTG +TP
Sbjct: 312 LPYDIDGVVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEATTTLLDIEVQVGRTGAITP 371

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG  +TNATLHNED I+            +D+R GD V+V+RAG+VIP+V+
Sbjct: 372 VARLKPVFVGGVTVTNATLHNEDEIRR-----------KDVRKGDTVIVRRAGDVIPEVL 420

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             ++ +R  DAQ F  P+ CP+C S + R  +          RCTGGL C+AQ+ + L H
Sbjct: 421 GPVLEKRPDDAQQFVMPTACPVCGSAIERLEDET------IARCTGGLFCAAQRKQTLWH 474

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
             SR A +IEGLG++ +D    S      ++  AD+++L+        ++  +   G  S
Sbjct: 475 AASRKALDIEGLGEKLVDQLVDS----GRVKTLADLYSLR------PLELVGLDRMGQKS 524

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             NL  +I+K R  +L R +F+LGIRHVG   AR +A+++ S                 D
Sbjct: 525 ADNLVAAIDKARAPALNRLLFALGIRHVGETTARDVARHFGSIDAIMDA----------D 574

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
             +L  VP VG ++A +I  F+    N   +E L  +    +        + +  K  V 
Sbjct: 575 EEALSSVPDVGPVVAASIRRFFAEQHNRDVIEQLKAQGVNPVAE-AAPQGTTLAGKTFVL 633

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL    R +A  ++   G  V+  +S+KT  ++ G+  GSKL KAQ+LGV +++E+  
Sbjct: 634 TGTLPNWTREEASMHIQAAGGKVTGSVSKKTAYLVAGEEAGSKLTKAQELGVTVLDEDAL 693

Query: 715 LFLL 718
             LL
Sbjct: 694 KALL 697


>gi|126649600|ref|ZP_01721841.1| NAD-dependent DNA ligase LigA [Bacillus sp. B14905]
 gi|126593925|gb|EAZ87848.1| NAD-dependent DNA ligase LigA [Bacillus sp. B14905]
          Length = 667

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 236/712 (33%), Positives = 377/712 (52%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +  + ++ L + +  +   YY   KP++ DS YD L     A+  A P L     P+ 
Sbjct: 1   MNEIEQRIAELNKLLHEYGYAYYVLDKPVVADSVYDQLLHELIALEEANPSLIF---PDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG +     KVTH  P LSL   +N  DL++F  ++ +       +   +  E K
Sbjct: 58  PTQRVGGTVVEGFKKVTHDYPMLSLSNAFNEADLQEFDRKVRQAIG----DHFSYVCELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+++YE G FV  A RGDG  GE+++A ++ I  IP  L   I   IEVRGE Y+
Sbjct: 114 IDGLAISLKYENGVFVQGATRGDGVVGEEITANLKTIHAIPLRLKEPI--TIEVRGEAYM 171

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFA 251
            K  F  LN +    G + +ANPRNAA+G LR+L+P      +   F     G       
Sbjct: 172 PKKSFEKLNAQRADNGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEVYGI 231

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            G  EML  +  LGFP N   ++ +T   ++++       R  L Y+IDG+V KVD ++ 
Sbjct: 232 DGHAEMLDYLEDLGFPSNKERQRCSTIEEVMAFIEHWTEHRPHLAYEIDGIVIKVDRYAQ 291

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  A+SPRW I++KF  ++  T LLDID+ +GRTG++TP A L PV + G  +  A
Sbjct: 292 QDELGYTAKSPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILTPVQVAGTTVQRA 351

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHNED I+            +DIR+GD V++++AG++IP+VV +++ +R  ++ PF  P
Sbjct: 352 SLHNEDLIR-----------EKDIRLGDTVIIRKAGDIIPQVVGVLIEQRPENSVPFEMP 400

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S ++R           A RC    AC AQ  E +K+FVSR+A NI+GLG + +
Sbjct: 401 QNCPVCDSELIRIEGE------VALRCVNP-ACFAQIAESIKYFVSRNAMNIDGLGDKVV 453

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   +    A  I   +D++ L   Q         +   G+ S TNL ++I   +  S+E
Sbjct: 454 EQLLR----ADLIHDVSDLYHLTIEQLV------ELERMGEKSATNLVNAIQASKENSME 503

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +  LGIRHVG + A+ +++ + S +      +            L+ +  +GD +A +
Sbjct: 504 RLLIGLGIRHVGEKAAKIVSEQFGSMEAVMAATD----------EQLVAIYEIGDKMASS 553

Query: 612 IVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +VE++ N      +E L +                  +    K +V TG L+++ R++A+
Sbjct: 554 LVEYFSNDDAGAVIERLAEVGVNMTFKGKKVEVVVGDNPFAGKTIVLTGKLEQLTRNEAK 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             + +LG  V+  +S+KTD++I G++ GSKL KA+QLG+++ NEE  +  L 
Sbjct: 614 AKIEELGGTVTGSVSKKTDLVIAGEDAGSKLAKAEQLGIEVWNEENLIEQLN 665


>gi|77165170|ref|YP_343695.1| DNA ligase (NAD+) [Nitrosococcus oceani ATCC 19707]
 gi|254433594|ref|ZP_05047102.1| DNA ligase, NAD-dependent [Nitrosococcus oceani AFC27]
 gi|123730661|sp|Q3JAI1|DNLJ_NITOC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76883484|gb|ABA58165.1| DNA ligase (NAD+) [Nitrosococcus oceani ATCC 19707]
 gi|207089927|gb|EDZ67198.1| DNA ligase, NAD-dependent [Nitrosococcus oceani AFC27]
          Length = 675

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 251/708 (35%), Positives = 388/708 (54%), Gaps = 47/708 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A++ + +L++ I+ +D  YY  + P++ DSEYD L R   A+   +P+L      + P  
Sbjct: 7   AKERIQALKELINNYDYAYYVVNNPLVPDSEYDRLIRELQALEENYPELITL---DSPTQ 63

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G +   SL ++ H IP LSL   ++  +L  F  R+      +    + +  EPK+DG
Sbjct: 64  RVGAKPVKSLGEIKHEIPMLSLNNAFHEGELADFHRRVKTRLGIE---RVDYAAEPKLDG 120

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             +++ Y+ G  V  A RGDG +GED++  IR IPT+   L    IP ++EVRGEVY+ +
Sbjct: 121 LAVSLLYQDGVLVQGATRGDGITGEDITHNIRTIPTVSLRLRGEKIPSLLEVRGEVYMPR 180

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKG 253
             F   N E IA G KP+ NPRNAA+G LR+L+P     R L  F +G+G+         
Sbjct: 181 QGFEQFNREQIAKGEKPFVNPRNAAAGSLRQLDPRITANRPLALFCYGVGQVEGGILPDR 240

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E+L +++  G  +           G   YY  +  +R  LPY+IDG+V+KVD    Q+
Sbjct: 241 HSEILFQLKQWGLRILPYSEVVEELAGCEKYYQHLLDLRDKLPYEIDGVVFKVDYLDQQQ 300

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  AR+PRW +++KF  ++  T++LDI++Q+GRTG LTPVARL+PV +GG  ++ ATL
Sbjct: 301 ILGSLARAPRWALAYKFPAQEELTQILDIEVQVGRTGALTPVARLQPVFVGGVTVSKATL 360

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNE  I+            +DIR+GD V V+RAG+VIP++V +I+  R PD++PF  P  
Sbjct: 361 HNEGEIQR-----------KDIRIGDTVYVRRAGDVIPEIVKVIMERRLPDSRPFQMPRQ 409

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S +V++         A  RC+GGL C AQ+ E +KHF  R A +I GLG + ++ 
Sbjct: 410 CPVCGSEIVKEEG------GAVARCSGGLYCPAQRKEAIKHFAGRRAMDINGLGDKLVEQ 463

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             K       ++  AD++ L + Q         +   G  S TNL ++I + ++ +L RF
Sbjct: 464 LTKQ----GLLKDVADLYGLTKEQLAG------LERMGQKSATNLINAIQQSKHTTLPRF 513

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIR VG   A+ LAK + S +  A                L +V  +G I+A  I 
Sbjct: 514 LYALGIREVGEATAQVLAKEFGSLEALASVSE----------ERLQQVTDIGPIVAAHIA 563

Query: 614 EFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            F++ P N   ++ L K          +  +   +  +  V TGTL+ + R +A+E +  
Sbjct: 564 AFFRQPHNRQIIQGLQKAGVCWPEVEDKVQIVQPLLGRTFVLTGTLESMTREQAKERLQA 623

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           LG  V+  +S  TD +I+G NPGSKL KA+ LG+ I++E  F   L  
Sbjct: 624 LGGKVNGSVSPHTDYLIIGANPGSKLVKARNLGITILDETYFRNFLDD 671


>gi|114563631|ref|YP_751144.1| DNA ligase, NAD-dependent [Shewanella frigidimarina NCIMB 400]
 gi|122299383|sp|Q080K9|DNLJ_SHEFN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|114334924|gb|ABI72306.1| DNA ligase, NAD-dependent [Shewanella frigidimarina NCIMB 400]
          Length = 670

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 244/715 (34%), Positives = 388/715 (54%), Gaps = 51/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + E+  L   I+ H+  YY    P I D+EYD L +R   +   +P        + 
Sbjct: 1   MHAIQTEMDQLTHTINQHNIRYYVDDAPSIPDAEYDRLIKRLTELEGDYPQFK---SVDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG       ++TH  P LSL+  +   D   F  RI         +++ +  EPK
Sbjct: 58  PTQRVGGIALQKFAQITHLKPMLSLDNAFEQADFAAFNKRITDKV-----DNVDYVCEPK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  ++I Y  G    AA RGDG  GED++A +R I +IP  L     P+++EVRGEV+
Sbjct: 113 LDGLAVSITYRFGVLERAATRGDGSVGEDITANVRTIRSIPLKLRGEGFPDLVEVRGEVF 172

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + K  F  LN   I+ G K + NPRNAA+G LR+L+     +R L F+ + LG       
Sbjct: 173 MPKAAFEVLNQRQISKGDKVFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEGESQ 232

Query: 252 KGQYEML---QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             Q        +++  G PV++ V+  ++   + +YY ++ + RS L Y+IDG+V KV++
Sbjct: 233 PMQTSHYGQLTQLQQWGVPVSSEVKVTDSLEKVYAYYADIMARRSALEYEIDGVVIKVND 292

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q+ LG  A++PRW I++KF  ++  T L  +D Q+GRTG +TPVARL+P+ +GG  +
Sbjct: 293 IAKQQTLGFVAKAPRWAIAYKFPAQEEMTLLESVDFQVGRTGAVTPVARLKPIFVGGVTV 352

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            +++GD V+++RAG+VIP++V I+  +R  DAQ  
Sbjct: 353 SNATLHNADEIARL-----------GVKIGDTVIIRRAGDVIPQIVAIVPEKRPDDAQDI 401

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP+CQS V R          A  RC+GGL C AQ+ E +KHF SR A NI+G+G 
Sbjct: 402 IFPQHCPVCQSIVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALNIDGMGD 455

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     ++ PAD+F+L        + +  +      S TN+  +I + +  
Sbjct: 456 KIVEQLIDKE----LVKTPADLFSLTA------SSVTMLDRMAMKSATNIVAAIKQAKTT 505

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA+++  ++                   L+ V  VGDI+
Sbjct: 506 TLARFLYSLGIREVGEATAANLAQHFTEFERIRTA----------SVEQLLEVADVGDIV 555

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQ 667
           A+ I +F+  P NI  ++ LL+         + + S   ++ +  V TGTL ++ R+ A+
Sbjct: 556 AKHIRQFFSQPHNIEVIDQLLEAGITWPVIEQADESQLSLKGQTWVLTGTLTQLNRNDAK 615

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             +  LGA V+  +S+ TD ++ G+  GSKL KA++LGVK+++E+  + LL   N
Sbjct: 616 AQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAEELGVKVIDEQALMDLLNAAN 670


>gi|148360390|ref|YP_001251597.1| DNA ligase [Legionella pneumophila str. Corby]
 gi|166215817|sp|A5IFV1|DNLJ_LEGPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148282163|gb|ABQ56251.1| DNA ligase [Legionella pneumophila str. Corby]
          Length = 673

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 247/713 (34%), Positives = 382/713 (53%), Gaps = 46/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +  ++ + +L+++I  +D  YY   +P++ D+EYD   +        +P       P
Sbjct: 1   MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G  + +   V H    LSL  ++  ++L+ FI R      +  +  + F  E
Sbjct: 58  DSPTQRVSGTPSDAFMPVAHKQAMLSLSNVFTTDELKAFIKRAIEKLDE-PNQQLVFACE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  + + YE G   +AA RGDG  GE+++A I+ I ++P      N P++IEVRGE
Sbjct: 117 PKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG-KTSE 248
           VYI K DF A N     +G K +ANPRNAA+G LR+LNP    +R L  + +G+G     
Sbjct: 177 VYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDY 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L  ++  GF V+   R+A    G + YY  M + R+ LP++IDG+VYK+D 
Sbjct: 237 KLPNSHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDS 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ+QLG  +R+PR+  +HKF   +  TRL+ +D Q+GRTG +TPVARLEPV++GG  +
Sbjct: 297 ISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I             +DI +GD V+++RAG+VIP+VV +I+ +R  +A+  
Sbjct: 357 SNATLHNFDEITR-----------KDIHIGDTVIIRRAGDVIPEVVSVILEKRPANARKI 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VVR+ +       A  RC GGL C AQ    + HF SR A  IEGLG 
Sbjct: 406 ELPKNCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGS 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +D           +   AD++ L          + N+   G+ S  NL  ++ K +  
Sbjct: 460 VLIDQLVDE----GIVHHLADLYEL------DLQTLANLPRMGEKSAKNLLSALEKSKKT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF+++LGIR +G   AR LA++Y   ++                  L+ +  +G + 
Sbjct: 510 TFNRFLYALGIREIGEAGARVLAEHYCDVESLKAAT----------IEELMTLNDIGPVA 559

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  IV F+    N+  ++ LL+     P   + + N  +    K +V TGTL  + R +A
Sbjct: 560 ASHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +  LGA VS  +S KTD ++ G   GSKL KA +LGV I+ E++FL  + 
Sbjct: 620 KAKLLALGAKVSGSVSSKTDYLVAGSEAGSKLVKATELGVAIIEEDEFLKWVN 672


>gi|296106543|ref|YP_003618243.1| DNA ligase (NAD ) [Legionella pneumophila 2300/99 Alcoy]
 gi|295648444|gb|ADG24291.1| DNA ligase (NAD ) [Legionella pneumophila 2300/99 Alcoy]
          Length = 673

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 247/713 (34%), Positives = 382/713 (53%), Gaps = 46/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +  ++ + +L+++I  +D  YY   +P++ D+EYD   +        +P       P
Sbjct: 1   MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G  + +   V H    LSL  ++  ++L+ FI R      +  +  + F  E
Sbjct: 58  DSPTQRVSGTPSDAFMPVAHKQAMLSLSNVFTTDELKAFIKRAIEKLDE-PNQQLVFACE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  + + YE G   +AA RGDG  GE+++A I+ I ++P      N P++IEVRGE
Sbjct: 117 PKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG-KTSE 248
           VYI K DF A N     +G K +ANPRNAA+G LR+LNP    +R L  + +G+G     
Sbjct: 177 VYIPKADFEAYNARARELGEKIFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDY 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L  ++  GF V+   R+A    G + YY  M + R+ LP++IDG+VYK+D 
Sbjct: 237 KLPNSHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDS 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ+QLG  +R+PR+  +HKF   +  TRL+ +D Q+GRTG +TPVARLEPV++GG  +
Sbjct: 297 ISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I             +DI +GD V+++RAG+VIP+VV +I+ +R  +A+  
Sbjct: 357 SNATLHNFDEITR-----------KDIHIGDTVIIRRAGDVIPEVVSVILEKRPANARKI 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VVR+ +       A  RC GGL C AQ    + HF SR A  IEGLG 
Sbjct: 406 ELPKNCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGS 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +D           +   AD++ L          + N+   G+ S  NL  ++ K +  
Sbjct: 460 VLIDQLVDE----GIVHHLADLYEL------DLQTLANLPRMGEKSAKNLLSALEKSKKT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF+++LGIR +G   AR LA++Y   ++                  L+ +  +G + 
Sbjct: 510 TFNRFLYALGIREIGEAGARVLAEHYCDVESLKAAT----------IEELMTLNDIGPVA 559

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  IV F+    N+  ++ LL+     P   + + N  +    K +V TGTL  + R +A
Sbjct: 560 ASHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +  LGA VS  +S KTD ++ G   GSKL KA +LGV I+ E++FL  + 
Sbjct: 620 KAKLLALGAKVSGSVSSKTDYLVAGSEAGSKLVKATELGVAIIEEDEFLKWVN 672


>gi|15642875|ref|NP_227916.1| DNA ligase [Thermotoga maritima MSB8]
 gi|7674016|sp|Q9WXV5|DNLJ_THEMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|4980590|gb|AAD35194.1|AE001696_8 DNA ligase [Thermotoga maritima MSB8]
          Length = 688

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 254/721 (35%), Positives = 390/721 (54%), Gaps = 54/721 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +R++        ++  +E+  L +EI YH+  YY  + P+I D EYD L RR   +  
Sbjct: 1   MSERKIP-------KEVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDRLMRRLIELER 53

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            +P+L     P+ P  ++GG++      V HS+P LSL+  +N E++ +F  R+ +  Q+
Sbjct: 54  MYPELV---TPDSPTQRVGGKVLEGFKTVKHSVPMLSLDNTYNEEEILEFDRRVKKALQE 110

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                + +  E KIDG  I +RYE G+FV  A RGDG  GEDVS  ++ + +IP  L   
Sbjct: 111 A---EVEYVAELKIDGVSIALRYENGRFVLGATRGDGIEGEDVSENVKTVRSIPLRLRKP 167

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +   IEVRGE+Y+  ++F  LNDE    G  P+ANPRNAA+G LR+LN      R L+ F
Sbjct: 168 V--TIEVRGEIYMPVDEFKRLNDEREEEGLPPFANPRNAAAGTLRQLNTALVAARRLDSF 225

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ +        K Q+E LQ ++ LGF VN   R       ++ Y+ E K  +  L Y +
Sbjct: 226 IYYVVHPENYGLKTQWEALQFLKELGFKVNPHSRLCKNIQEVIDYWKEWKERKRELDYWV 285

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV+ F  Q+ LGE +++PRW I+ KF  +QA TR+LD+ IQ+GRTG+LTPVA LE
Sbjct: 286 DGVVVKVNRFDFQRILGETSKAPRWAIAFKFPAEQARTRVLDVTIQVGRTGVLTPVAELE 345

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G ++  A+LHN +YI+            +DIR+GD V V++AG +IP++V  I  
Sbjct: 346 PVQLAGTIVKRASLHNFEYIR-----------EKDIRIGDYVFVEKAGGIIPQIVKSIPE 394

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R  + +    P  CP+C  +V      K      A RC     C A+    L+  VSR+
Sbjct: 395 LRTGNEKEIKPPDKCPVCGGKVG-----KLNPDEVAIRCLNP-HCPAKLKRALRTLVSRE 448

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG++ +D        A  I+  ADIF L           +   G G  ++  + 
Sbjct: 449 ALDIEGLGEKLIDRLVD----AGLIKDIADIFYLTPFDL-----AQLGPGIGQRTIAKIL 499

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
             I + +   L + I  LGI  VG + A+ LA+++ S +  A             + +L 
Sbjct: 500 QEIEEAKKRPLHKLITGLGIPMVGQKTAKILAEHFKSLEAIADA----------SYETLK 549

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +P +G  IA++IVE+++NP+    +E L K     +      +   +       TGTL+
Sbjct: 550 DIPGIGPEIAKSIVEYFRNPKTREIIEKLKKAGV-KLEEKVVKLD-ILRGLTFAVTGTLK 607

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R +  E++ +LGA V   +SR TD +IVG+NPGSK E+A+ L VK+M+EE+FL  ++
Sbjct: 608 NFTREEIIEFLEKLGAKVVNSVSRNTDYLIVGENPGSKYERAKMLKVKMMSEEEFLEFVR 667

Query: 720 Q 720
           +
Sbjct: 668 K 668


>gi|297578580|ref|ZP_06940508.1| DNA ligase [Vibrio cholerae RC385]
 gi|297536174|gb|EFH75007.1| DNA ligase [Vibrio cholerae RC385]
          Length = 669

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 386/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    ++L+ L Q +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSNVEQKLTELRQILHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+         ++  F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDSELDSFYRRMTDRIPAVQHSA--FCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I  IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+        ++  +   G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+++LGIR VG   A +LA+++LS +   Q                I VP VG ++A 
Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+ 
Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|228472685|ref|ZP_04057445.1| DNA ligase, NAD-dependent [Capnocytophaga gingivalis ATCC 33624]
 gi|228276098|gb|EEK14854.1| DNA ligase, NAD-dependent [Capnocytophaga gingivalis ATCC 33624]
          Length = 666

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 221/709 (31%), Positives = 370/709 (52%), Gaps = 46/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++ +L +E++ H+  YY    P I D E+D   +    +   +P      DPN 
Sbjct: 1   MDSILQQIEALRKELNEHNYNYYVLDTPSISDYEFDQKLKALQDLEAQYPQYK---DPNS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE+  +   VTH     SL+  ++ E++ ++  R+ +       + + F  E K
Sbjct: 58  PTVRVGGEITKNFPTVTHEFRMYSLDNSYSKEEVEEWEKRVLKGLG---TDKVSFVCELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  I + Y+ G+ V A  RGDG  G++++A +R I ++P  L  + P+   +RGE+ I
Sbjct: 115 YDGASIDLTYDHGQLVQATTRGDGVQGDEITANVRTIRSVPLTLKGDYPDHFHIRGEIII 174

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            K  F  +N++ IA G  PY NPRN ASG L+  +  ++ +     +        +    
Sbjct: 175 LKEGFKKMNEQRIAEGEDPYMNPRNTASGSLKLQDTAEVAKRPLDCLLYYVVGDNLPVDN 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q++ LQK R  GF V +  +  ++   ++ + N   + R  LPY+ DG+V KV+++  Q+
Sbjct: 235 QFDSLQKARDWGFKVPSQSKLCHSTDEVMEFINYWDTRRHDLPYETDGVVIKVNDYQAQQ 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  ++SPRW I++KF  ++ +T L  I  Q+GRTG +TPVA L PV + G ++  A+L
Sbjct: 295 ELGYTSKSPRWAIAYKFKAEEVTTSLESISYQVGRTGAITPVANLSPVLLAGTIVKRASL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I  L            + +GD+V V++ GE+IPK+  + +  RH  A P +F + 
Sbjct: 355 HNADQIAKL-----------GLHIGDQVFVEKGGEIIPKITGVRLEARHEQATPVTFITH 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S +VR+         A H C     C  Q   R++HF+SR A NIEGLG + ++ 
Sbjct: 404 CPECGSELVRNEGE------AQHYCPNAYGCPPQITGRIQHFISRKAMNIEGLGSETVEL 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F+    A  I   AD++ L+  Q  +      +   G  S  N+   I K + +  ER 
Sbjct: 458 MFR----AGLIHNYADLYELKAEQIQN------LERMGTRSAQNIITGIEKSKEVPFERV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGIR VG  +A+  A+ Y +   F              +  LI+V  +GD IAQ+++
Sbjct: 508 LFALGIRMVGESVAKKFARIYKTLDAFRTAP----------YEQLIQVDEIGDRIAQSVI 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           EF+ + RN   +E L         +   + ++S  ++ K LV +G   +  R + +  + 
Sbjct: 558 EFFADDRNKEILERLQGYGLQFALKETAQTSLSEALKGKTLVVSGVFARHSRDEIKALIE 617

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
             G  V + +S KT+ ++ G+N G SKLEKA QLG+ I++EE+F  ++Q
Sbjct: 618 SHGGKVGSSISSKTNYVVAGENMGPSKLEKATQLGIPILSEEEFEKMIQ 666


>gi|229525582|ref|ZP_04414987.1| DNA ligase [Vibrio cholerae bv. albensis VL426]
 gi|229339163|gb|EEO04180.1| DNA ligase [Vibrio cholerae bv. albensis VL426]
          Length = 669

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 387/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    ++L+ L Q +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSNVEQKLTELRQILHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+         ++  F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDSELDSFYRRMTDRIPAVQHSA--FCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+        ++  +   G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+++LGIR VG   A +LA+++LS +   Q                I VP VG I+A 
Sbjct: 509 PKFLYALGIREVGEATAFNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVIVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+ 
Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 619 ALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|163741160|ref|ZP_02148552.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis 2.10]
 gi|161385513|gb|EDQ09890.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis 2.10]
          Length = 741

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 300/752 (39%), Positives = 437/752 (58%), Gaps = 57/752 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ ++AR     L+ E+   D  Y+Q   P I D++YDA KR   A+A  FP+LA     
Sbjct: 1   MTSDEARARFLLLQDELRVADLAYHQADDPEISDADYDAKKREYRALAEHFPELADGATA 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
              L  +G  +     K+TH+   +SL   ++ ED+R F   + ++      + + +T E
Sbjct: 61  ---LETVGAPVASGFGKITHAQRMMSLGNAFDDEDVRDFDKGLRKYLGLGASDPLAYTAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++RYE GK ++AA RGDG  GE+V+   R I  IP       P ++EVRGEV
Sbjct: 118 PKIDGLSLSLRYENGKLIHAATRGDGAVGENVTENARTIADIP-QEIAAAPAVLEVRGEV 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+S  DF ALND   A G K +ANPRNAA+G LR+LN     +R L FF +  G+ SE  
Sbjct: 177 YMSHEDFAALNDRHAAQGGKTFANPRNAAAGSLRQLNAEITRSRPLRFFAYSWGELSEPL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A+ Q+E L ++R +GF  N   +  +T   +++ Y  +++ R+TL YDIDG+VYKVD  +
Sbjct: 237 AETQFEALARLREMGFQTNPLTKHCSTTDALIAQYRLIEAQRATLGYDIDGVVYKVDALA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL+PV +GG +++N
Sbjct: 297 LQARLGFRSTTPRWAIAHKFPAELAWTRLEGIDIQVGRTGALSPVARLQPVTVGGVVVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYI GLD+ G+ +R G+DIR+GD V V RAG+VIPK+ D+ +++R  DA PF+F
Sbjct: 357 ATLHNEDYIAGLDSKGEEIRDGKDIRIGDWVQVYRAGDVIPKIADVDLSKRPEDAVPFAF 416

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S  VR+         A  RCTGGL C AQ +E+LKHFVSR AF+I+GLG +Q
Sbjct: 417 PAACPECGSDAVREEG------DAVRRCTGGLICPAQAVEKLKHFVSRKAFDIDGLGAKQ 470

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F+   D   +I+ PADIFTLQ R   +  K++N  G+G+ S  NL+ +I ++R I L
Sbjct: 471 IEAFY--GDAVLAIKTPADIFTLQARDAKTLAKLKNRDGWGETSAANLFAAIEEKRRIEL 528

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN------------------------- 585
            R IF LGIRHVG   AR LA +Y  +   A  ++                         
Sbjct: 529 ARLIFGLGIRHVGEVGARDLALHYADWDAMAAAVDTARPAALAQRAADEAEDRERVAAAQ 588

Query: 586 ------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
                             N+ +     W  L  +  +G  +  ++ + + N     A +A
Sbjct: 589 ENRRARIKEARDRAVATLNVPSEARAAWDDLTGIDGIGATLGVSLSDAFANTEERAAFDA 648

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           L   +        +N  S +    +VFTGTL+K+ R +A+     LGA V+  +S+KTDI
Sbjct: 649 LRGHLDIIPPEAPQN-DSPVTGLTVVFTGTLEKMTRAEAKARAEGLGAKVAGSVSKKTDI 707

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ G   GSK +KA+ LGV+I++E+ +L L+ 
Sbjct: 708 LVAGPGAGSKEQKARDLGVRILDEDGWLELIA 739


>gi|319655032|ref|ZP_08009103.1| DNA ligase [Bacillus sp. 2_A_57_CT2]
 gi|317393299|gb|EFV74066.1| DNA ligase [Bacillus sp. 2_A_57_CT2]
          Length = 668

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 242/715 (33%), Positives = 380/715 (53%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + ++ A K +  L   ++ ++  Y+   +P + D+EYD L R    +   FP+L      
Sbjct: 1   MDLQLAEKRVKDLHNLLNQYNYEYHVLDQPSVPDAEYDRLMRDLIELEGQFPELK---TE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE+     KV H    LSL   ++ +DLR F  R+ +   +    ++ +  E
Sbjct: 58  DSPTQRVGGEILDMFEKVEHQSQMLSLGNAFSEQDLRDFDRRVRQGAGE----NVSYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G F   A RGDG  GE+++A ++ I +IP  L  ++   +EVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGLFTLGATRGDGSIGENITANLKTIRSIPLRLKESV--TMEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ +  F  LN      G +P+ANPRNAA+G LR+L+P     R L+ FV+G+    +  
Sbjct: 172 FMPRRSFEKLNKAKEENGEEPFANPRNAAAGSLRQLDPRLAAKRNLDIFVYGIANVGDTG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   ++  +   ++ Y       R  L YDIDG+V KVD   
Sbjct: 232 VVSHSEGLDYLDSLGFKTNKERKRCESIEKVIEYVQGWTDKRPNLSYDIDGIVIKVDSLE 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  A+SPRW I++KF  ++  T L DI++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 SQEQLGTTAKSPRWAIAYKFPAEEVVTTLRDIELSVGRTGVVTPTALLEPVRVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DI++GD+V+VK+AG++IP+VV+++ + R  + Q F+ 
Sbjct: 352 ASLHNEDLIR-----------EKDIKIGDQVVVKKAGDIIPEVVNVLADRRTGEEQDFNM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTHCPECESELVRLDGE------VALRCINPK-CPAQIREGLIHFVSRNAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F        I+  ADI+ L   Q         +   G+ SV NL  +I   +  SL
Sbjct: 454 ISQLFAEN----LIKDVADIYKLTYEQLI------QLERMGEKSVNNLIQAIENSKGNSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIRHVGA+ A++LA+ +   +   +              +L  +  +G+ +A 
Sbjct: 504 EKLLFGLGIRHVGAKAAKTLAQEFGHMEALEKA----------SRDNLTAINEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +IV F+        +  L                 +N  S    K +V TG L+ + R++
Sbjct: 554 SIVSFFDQEEAHELIAELKAAGVNMAYNGPKPVSAENSDSFFAGKTVVLTGKLEIMSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+E +  LG  VS  +S+KTD++I G+  GSKL KAQ+LGV++ NEE+ +  L +
Sbjct: 614 AKEKIEALGGKVSGSVSKKTDVVIAGEEAGSKLTKAQELGVEVWNEERLVEELNK 668


>gi|171463268|ref|YP_001797381.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|254781389|sp|B1XTU0|DNLJ_POLNS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171192806|gb|ACB43767.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 671

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 269/715 (37%), Positives = 395/715 (55%), Gaps = 48/715 (6%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + + S     +  + L+ E++  +  YY    P++ D EYD L R    I    P+   S
Sbjct: 1   MSSNSPTNLAERYAFLQAELARLEHAYYVLDNPLLPDIEYDRLYRELLDIEAVHPEWVTS 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           E       ++GG        VTH++P LSL   +   +L  F  R       +    + +
Sbjct: 61  E---SLSQRVGGAALKEFDSVTHAVPMLSLNNAFEDAELIAFDRRCREVLHAEH---MAY 114

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEV 187
             E K DG  I++RYE G  V AA RGDG SGEDV+A I+ I  IP      NIP+++EV
Sbjct: 115 AGELKFDGLAISLRYENGLLVTAATRGDGASGEDVTANIKTIRAIPLKLTRKNIPQVLEV 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-- 244
           RGEV++   DF  +N +   +G K +ANPRNAA+G LR+L+      R L+FF +GLG  
Sbjct: 175 RGEVFMYLKDFEKMNRQAAELGEKEFANPRNAAAGSLRQLDSKITAKRPLSFFAYGLGAL 234

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +      K   E+L     LG PV +  +  ++   I+++Y+E+   R +LPYDIDG+VY
Sbjct: 235 EPQSWLPKTHEELLNAYIELGLPVCSERKVLHSVQEILAFYSEIDDKRDSLPYDIDGVVY 294

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+ F+ Q +LG  +R+PR+ ++HK+  ++A T +L ID+Q+GRTG +TPVARL PV +G
Sbjct: 295 KVNSFAEQAKLGFASRAPRFALAHKYPAQEALTTVLGIDVQVGRTGAITPVARLAPVEVG 354

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHNED IK            +D+R+GD V V+RAG+VIP+VV +I + R  D
Sbjct: 355 GVTVTNATLHNEDEIKR-----------KDVRIGDTVSVRRAGDVIPEVVSVIKDRRPAD 403

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+ F  PS CP+C S + R  +       A  RC+GGL C AQ+ + L HF  R A +IE
Sbjct: 404 AKEFQMPSRCPVCDSHIERLADE------AVARCSGGLFCGAQRKQALIHFAHRRAMDIE 457

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++ +D           +R PAD++ L        T + N+   G+ S  NL  +IN+
Sbjct: 458 GLGEKIVDQLVDQN----LVRTPADLYRL------GFTALANLERMGEKSADNLIKAINQ 507

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            RN +L RFIF+LGIRHVG   A+ LA +Y S                     L+ V  V
Sbjct: 508 SRNTTLARFIFALGIRHVGETTAKDLANHYQSMHALMDA----------GVEDLLTVKDV 557

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G ++A +I  F Q   N   +E LL      +   EK +S+ +  K  V TGT   + R 
Sbjct: 558 GPVVADSITSFMQEAHNREVIEQLLASG-MRLAVEEKVISAAVAGKTFVLTGTFPTMTRD 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A++ + + GA V+  +S+KTD ++ G + GSKL KA++LGV +++E   L LL+
Sbjct: 617 EAKDLLEKAGAKVAGSVSKKTDYVVAGTDAGSKLTKAEELGVPVIDEAAMLDLLK 671


>gi|258542980|ref|YP_003188413.1| DNA ligase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634058|dbj|BAI00034.1| DNA ligase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637118|dbj|BAI03087.1| DNA ligase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640170|dbj|BAI06132.1| DNA ligase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643227|dbj|BAI09182.1| DNA ligase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646282|dbj|BAI12230.1| DNA ligase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649335|dbj|BAI15276.1| DNA ligase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652321|dbj|BAI18255.1| DNA ligase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655379|dbj|BAI21306.1| DNA ligase [Acetobacter pasteurianus IFO 3283-12]
          Length = 685

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 284/715 (39%), Positives = 414/715 (57%), Gaps = 34/715 (4%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +QAR+EL  L  EI++H+  YY+   P I D+EYDAL+RR DAI    P+   +E  
Sbjct: 1   MTQQQAREELERLAAEIAHHNAAYYRNDAPEISDAEYDALRRRYDAIVAQHPE---AEPE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFT 129
           N     +G   + +  K  H +P LSL+ +++ ED   FI+R  RF     D    + F 
Sbjct: 58  NSAAQAVGAAPDTAFGKHIHLVPMLSLDNVFDREDFEGFISRATRFLGLDQDATEQLIFV 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            EPKIDG  I++ YEKG+FV    RGDG  GEDV+A +R +  +P  LS + P++IE+RG
Sbjct: 118 GEPKIDGLSISLTYEKGRFVRGTTRGDGTEGEDVTANLRTLKDLPLRLSGSYPDLIEIRG 177

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EV++SK  FL LN    A  ++ +ANPRNAA+G LR+L+P     R L+ F + LG  SE
Sbjct: 178 EVFLSKKHFLELNAAQEAANKRLFANPRNAAAGSLRQLDPKITAQRPLSLFAYALGFCSE 237

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
             ++  +  L++++  GFPVN   RQ        +++ E+   R+ L YDIDG+VYK+D+
Sbjct: 238 KISRSHWAYLEQLKAWGFPVNPLSRQIKGVEDAEAFFAEVSQSRAELAYDIDGVVYKIDD 297

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG   R+PRW I+ KF  +QA TRL +I+IQ+GRTG LTPVA LEPVN+GG L+
Sbjct: 298 LALQERLGFAGRAPRWAIAWKFPAEQAITRLKEIEIQVGRTGALTPVAHLEPVNVGGVLV 357

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI-IVNERHPDAQP 427
             ATLHNED I             +D+R GD V ++RAG+VIP+V+ +    +  P   P
Sbjct: 358 MRATLHNEDEIAR-----------KDVRPGDMVFIQRAGDVIPQVLGVAPSPDGTPRQAP 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           + FP  CP+C +  VR          A  RCTGGL C AQ +ERL HFVSR AF+IEGLG
Sbjct: 407 YHFPDHCPVCGAAAVRPEGE------AVRRCTGGLTCPAQVVERLIHFVSRQAFDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +  F         I  P DIF L          IE   G+G+ SV  L  +I  RR 
Sbjct: 461 DRSIREFHD----IGLILTPGDIFRLHEH----AADIEKRDGWGEQSVQKLLQAIESRRT 512

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           ISL RFI++LGIR +GA  AR LA++Y +Y+N+  ++       +D  L L  +  +G  
Sbjct: 513 ISLSRFIYALGIRRIGASNARLLARHYGTYENWFSQMQAAAIIGSDARLELGSITGIGTT 572

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            A+ +V F     N+  +  L   ++ +           +  K +VFTGTL  + R +A+
Sbjct: 573 TAEDLVAFVAEEHNLQTLADLHANLTIT--EETAASEGALAGKTIVFTGTLHTMTRPEAK 630

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
               ++GA VS  +S+KTD++++G+  GSK +KA +LG++ M+E ++     +  
Sbjct: 631 ATAERMGAKVSDSVSKKTDLVVLGEKAGSKAKKAVELGLQTMDEAEWNAFCSEQE 685


>gi|209695779|ref|YP_002263709.1| NAD-dependent DNA ligase LigA [Aliivibrio salmonicida LFI1238]
 gi|254781250|sp|B6EJQ6|DNLJ_ALISL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|208009732|emb|CAQ80037.1| NAD-dependent DNA ligase [Aliivibrio salmonicida LFI1238]
          Length = 669

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 249/709 (35%), Positives = 388/709 (54%), Gaps = 47/709 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
              K L  L+++++YH   YY    P + D+EYD + ++   I    P+       + P 
Sbjct: 2   SIEKTLDELKKQLNYHAYRYYVEDSPELPDAEYDRMMQQLLLIEKEHPEFMTV---DSPS 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GGE      +V H IP LSL+  +N  +L  F  RI        D+   F  EPK+D
Sbjct: 59  QRVGGEALGGFTQVQHEIPMLSLDNAFNDNELDSFEKRINDRL--ISDSVSLFCCEPKLD 116

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194
           G  +++ Y  G  V A  RGDG +GE+++  +R I  IP  L     P  +EVRGEV++ 
Sbjct: 117 GLAVSLLYVDGLLVQAGTRGDGATGENITENVRTIRCIPLTLQGEGWPTRLEVRGEVFMP 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK- 252
           K  F ALN+  +    KP+ANPRNAA+G LR+L+     TR L+F+ + +G       + 
Sbjct: 177 KAGFDALNERALKRAEKPFANPRNAAAGSLRQLDSKITATRPLSFYAYSVGIIEGGELEG 236

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             Y+   +++  G P+    +Q ++   + +YY ++   R  L Y+IDG+V KVD  SLQ
Sbjct: 237 SHYQRFVQLKNWGLPMCEETKQCHSLTDVKAYYKDILERRDALKYEIDGVVIKVDSISLQ 296

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEP+ +GG  ++NAT
Sbjct: 297 EQLGFVARAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNAT 356

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I  L            + +GD V+++RAG+VIP++V ++   R  D++   +P+
Sbjct: 357 LHNADEIARL-----------GVHIGDTVIIRRAGDVIPQIVSVVEARRPEDSKAIIYPT 405

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S++ R             RC  GL C AQ+ E LKHFVSR A +++GLG + ++
Sbjct: 406 TCPACDSQLERIEGE------VVTRCVAGLVCPAQRKEALKHFVSRKALDVDGLGDKVVE 459

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                E     +  PAD+F L      S   +  +   G  S  N+ +++NK +  +L R
Sbjct: 460 QLVDKE----MVETPADLFKL------SAGVLTVLDRMGPKSAQNVVNALNKAKETTLSR 509

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F++SLGIR VG   A +LA ++ +    +             +  LI V  VGDI+A+ I
Sbjct: 510 FLYSLGIREVGEATAANLALHFQTLNAISSAT----------FEQLIEVSDVGDIVAKHI 559

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           + F+  P N   +E L              ++V   + +K +V TGTL K++R++A+  +
Sbjct: 560 LGFFSEPHNQAVIENLQLMGVNWPDIKALDESVPQPLADKVVVLTGTLYKLKRNEAKAAL 619

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +LGA V+  +S+ TDI+  G+  GSKL KA++LGV+IMNEEQ + +L 
Sbjct: 620 QELGAKVAGSVSKNTDILFAGEAAGSKLAKAEELGVEIMNEEQLIEILN 668


>gi|85374270|ref|YP_458332.1| DNA ligase [Erythrobacter litoralis HTCC2594]
 gi|123409617|sp|Q2N9V6|DNLJ_ERYLH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|84787353|gb|ABC63535.1| DNA ligase [Erythrobacter litoralis HTCC2594]
          Length = 736

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 282/762 (37%), Positives = 408/762 (53%), Gaps = 80/762 (10%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
             +E LS  +A  EL  L ++I+ HD  Y+    P I D EYDAL RR   +  AFP L 
Sbjct: 3   TELENLSEAEAANELMRLARQIAKHDRLYHAEDAPEITDQEYDALVRRNAELEAAFPHLV 62

Query: 67  RSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  K+G  +  S L KVTH +  +SL+  +  E++ +F+ R+ R+    +D +
Sbjct: 63  RE---DSPSRKVGHAVAASPLSKVTHEVRMMSLDNAFADEEVAEFVARVRRYLNIGEDEA 119

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV--------- 176
           I FT E KIDG   ++RYE GK V AA RGDG  GEDV+  +  I  IP+          
Sbjct: 120 IAFTAEDKIDGLSCSLRYENGKLVRAATRGDGQVGEDVTPNVAHIGDIPQELTPLPLAGG 179

Query: 177 ----------------------LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR---- 210
                                    N P + E+RGEVY++  DF ALN  ++   R    
Sbjct: 180 AGGGPLDDSGSAPTPDPSRRREGKWNGPAVFEIRGEVYMATADFHALNARLMDEARAEAD 239

Query: 211 -----------KPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA-KGQYEM 257
                      + +ANPRNAA+G LR+ + +   TR L F+ HG G        + Q E+
Sbjct: 240 EKDNAFDTAKVRQFANPRNAAAGSLRQKDASVTATRPLRFWAHGWGAVEGDVPGETQVEV 299

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           ++++   G PV+   R+  T   ++++Y  + + R+ LPY+IDG+VYKVD    Q++LG 
Sbjct: 300 VEQIAAWGVPVSPLFRRCETLEEMLAHYEAIGAQRADLPYEIDGVVYKVDRLDYQQRLGF 359

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A++PRW I+ KF  +QA T L +IDIQ+GRTG LTPV RL PV +GG  +TN TLHN D
Sbjct: 360 VAKAPRWAIARKFPAEQAETTLENIDIQVGRTGKLTPVGRLAPVLVGGVTVTNVTLHNRD 419

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+ L            +R GDRV+V+RAG+VIP+VV  +  +   D+  F FP  CP C
Sbjct: 420 EIERL-----------GVRPGDRVVVQRAGDVIPQVVRNLTPDEKRDS--FEFPDTCPEC 466

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S  V +            RCTGGL C AQ+ ERLKHFVSR A +I+GLG++ +D FF  
Sbjct: 467 GSEAVSEEG------GVDVRCTGGLICPAQRTERLKHFVSRAALDIDGLGEKTIDQFF-- 518

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +  PADIF L+ R+     +I  + G+ D SV NL  S+  RR     R +  L
Sbjct: 519 --ALGWLESPADIFRLKDRRD----EILALEGWMDKSVDNLLASVEARREPDTARLLLGL 572

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA  AR L KY+       +      A + +  ++L  +  +G  + +A+ +F+ 
Sbjct: 573 GIRHVGAVTARDLMKYFHELPALRETAEKARAGDEEAVVALTSIDGIGSAVVEALGDFFH 632

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
              N    + LL EVSP     E  + S +  K +VFTG L+ + R +A+    +LGA  
Sbjct: 633 EEHNRAVWDDLLSEVSPPRYEVE-TLDSPVAGKTVVFTGKLETMSRDEAKAQAERLGAKA 691

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           S  +S KTD+++ G   GSKL+KAQ LG+++++E  +  ++ 
Sbjct: 692 SGSVSAKTDLLVAGPGAGSKLKKAQDLGIEVIDEAGWAEIVA 733


>gi|158521726|ref|YP_001529596.1| DNA ligase, NAD-dependent [Desulfococcus oleovorans Hxd3]
 gi|254781314|sp|A9A0L9|DNLJ_DESOH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|158510552|gb|ABW67519.1| DNA ligase, NAD-dependent [Desulfococcus oleovorans Hxd3]
          Length = 682

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 263/718 (36%), Positives = 394/718 (54%), Gaps = 50/718 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
             L   +A++ ++ L  E+  H+  YY    P I D+EYD L R    +    PDLA   
Sbjct: 3   NTLDKSEAKERVTFLRNELHRHNHLYYIKDAPEISDAEYDRLFRELAELEALHPDLA--- 59

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
           DP  P  ++G      L  VT +IP LS+   +  E+L KF  R+ R  Q    + + + 
Sbjct: 60  DPASPTARVGAPPTGDLATVTRTIPMLSISNAFADEELFKFDERVRRSLQ--TGDPVTYL 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIE 186
            EPK+DGT + + YEKG+ V AA RGDG +GE ++   R I ++P  L+     +P ++E
Sbjct: 118 AEPKLDGTAVELVYEKGRLVMAATRGDGVTGEVITPNARTIGSVPLHLTGDAVPMPNLLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG- 244
           VRGEV ++K  F  LN   +      +AN RNAA+G LR+L+     +R L    +G+G 
Sbjct: 178 VRGEVVMTKEGFEKLNALRLERDEPLFANARNAAAGSLRQLDSRVTASRPLTLIAYGIGR 237

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
            +       Q+E++ ++   GF  N+ VR      G++ +Y  ++ IR +LPYDIDG+V 
Sbjct: 238 FSEIDAISTQHEIVTRLADFGFKTNSHVRWDLDIKGVIDFYRFLEGIRPSLPYDIDGMVV 297

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD    Q+ LG  +RSPRW+I++KFA  Q +TRL+ ID+Q+GRTG LTPVA LEPV IG
Sbjct: 298 KVDRLDFQRTLGATSRSPRWVIAYKFAASQETTRLVAIDVQVGRTGALTPVALLEPVTIG 357

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ ATLHNED I             +DIRVGD VLV+RAG+VIP+VV +I   R  +
Sbjct: 358 GVTVSRATLHNEDEIAR-----------KDIRVGDAVLVQRAGDVIPEVVQVITGRRTGN 406

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
             PF  P+ CP+C + VVR+ +       A  RC    AC AQ  ER+KHF ++ AF+I+
Sbjct: 407 ETPFQMPATCPVCGTPVVREPSE------AVTRCVNA-ACPAQVKERIKHFAAKGAFDID 459

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG + +D           I   AD+FTL+          E++   G  S  NL  +I K
Sbjct: 460 GLGDKLVDQLVDR----GMIASYADLFTLRVEDL------ESLDRMGFKSAQNLVAAIEK 509

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R+I+ + F++ LG+RHVGA +A  LA+ +      A+               L  +  +
Sbjct: 510 SRHITFDAFLYGLGMRHVGAHVATLLARAFPGIDQLAEAALAG---------QLNSIDGI 560

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKI 661
           G +IA+++  F+ NP N   V++L+          ++  +     +  K  V TGTL+K+
Sbjct: 561 GGVIAESVKNFFSNPENRQTVDSLINHGVALQFPEKEAATGHEMPLAGKTFVLTGTLEKM 620

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R +A++ +   G  V+  +S +TD ++ G+ PGSK +KA+ LGV I++E   L LL+
Sbjct: 621 TRDQARQRIEAAGGKVTGSVSSRTDYVVAGEAPGSKRDKAEALGVAILDEAGLLSLLE 678


>gi|54296979|ref|YP_123348.1| DNA ligase [Legionella pneumophila str. Paris]
 gi|81370862|sp|Q5X6E6|DNLJ_LEGPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|53750764|emb|CAH12171.1| DNA ligase [Legionella pneumophila str. Paris]
          Length = 673

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 249/713 (34%), Positives = 384/713 (53%), Gaps = 46/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +  ++ + +L+++I  +D  YY   +P++ D+EYD   +        +P       P
Sbjct: 1   MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G  + +   V H  P LSL  ++ I++L+ FI R      +  +  + F  E
Sbjct: 58  DSPTQRVSGTPSDAFMPVAHKQPMLSLSNVFTIDELKAFIKRAIEKLDE-PNQQLVFACE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  + + YE G   +AA RGDG  GE+++A I+ I ++P      N P++IEVRGE
Sbjct: 117 PKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG-KTSE 248
           VYI K DF A N     +G K +ANPRNAA+G LR+LNP    +R L  + + +G     
Sbjct: 177 VYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYSIGACEDY 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L  ++  GF V+   R+A    G + YY  M + R+ LP++IDG+VYK+D 
Sbjct: 237 KLPNSHLEQLNLLKEFGFRVSPETRRAIGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDS 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ+QLG  +R+PR+  +HKF   +  TRL+ +D Q+GRTG +TPVARLEPV++GG  +
Sbjct: 297 ISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I             +DIR+GD V+++RAG+VIP+VV +I+ +R  +A+  
Sbjct: 357 SNATLHNFDEITR-----------KDIRIGDTVIIRRAGDVIPEVVSVILEKRPINARKI 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VVR+ +       A  RC GGL C AQ    + HF SR A  IEGLG 
Sbjct: 406 ELPKNCPVCGSEVVREADE------AIARCIGGLYCKAQLKRMMWHFASRKAMYIEGLGS 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +D           +   AD++ L          + N+   G+ S  NL  ++ K +  
Sbjct: 460 VLIDQLVDE----GIVHHLADLYEL------DLQTLANLPRMGEKSAKNLLSALEKSKKT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF+++LGIR +G   AR LA++Y   ++                  L+ +  +G + 
Sbjct: 510 TFNRFLYALGIREIGEAGARVLAEHYCDVESLKSAT----------IEELMTLNDIGPVA 559

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  +V F+    N+  ++ LL+     P   + + N  +    K +V TGTL  + R +A
Sbjct: 560 ASHVVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSAMGREEA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  +  LGA VS  +S KTD +I G   GSKL KA +LGV I+ E++FL  + 
Sbjct: 620 KAKLLALGAKVSGSVSSKTDYVIAGSEAGSKLIKATELGVAIIEEDEFLKWVN 672


>gi|109898096|ref|YP_661351.1| DNA ligase, NAD-dependent [Pseudoalteromonas atlantica T6c]
 gi|122972028|sp|Q15UZ1|DNLJ_PSEA6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|109700377|gb|ABG40297.1| DNA ligase, NAD-dependent [Pseudoalteromonas atlantica T6c]
          Length = 677

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 252/709 (35%), Positives = 395/709 (55%), Gaps = 48/709 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + L+ +   I+ ++  YY    P + D+EYD L R    I +  PDL     P+ P  K
Sbjct: 8   AQRLTQIINTINEYNYQYYVQDNPSVPDAEYDRLMRELLDIENNHPDL---RSPDSPSQK 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG    +  +V H +P LSL+  ++ +D++ F  RI      K  + I F+ EPK+DG 
Sbjct: 65  VGGAALSAFEQVEHEVPMLSLDNAFDEDDMQAFEKRIKDRL--KISSEISFSCEPKLDGL 122

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196
            ++I YE G+ V AA RGDG  GE+++  +R I  +P  L   N P  +EVRGEV +++ 
Sbjct: 123 AVSILYENGQLVRAATRGDGRVGENITTNVRTIANVPLRLRGENFPSRLEVRGEVIMTRA 182

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK--- 252
            F+ LN+  I  G+KP+ NPRNAA+G LR+L+P     R L F+ + LG           
Sbjct: 183 GFVTLNEAQIKKGKKPFVNPRNAAAGSLRQLDPKITAARPLLFYSYSLGLVENEQQPLGE 242

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
                L ++   G P++  +         ++Y++++  +RS L YDIDG+V+KVD  ++Q
Sbjct: 243 THSSRLAQLSEWGLPLSKELEVTQGATQCLTYFHKIGELRSQLSYDIDGVVFKVDNIAMQ 302

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  AR+PRW I+HKF  ++  + LLD++ Q+GRTG +TPVARLEP  +GG  ++NAT
Sbjct: 303 QELGFVARAPRWAIAHKFPAQEEMSTLLDVEFQVGRTGAITPVARLEPTFVGGVTVSNAT 362

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+D I  L            I++GD V+++RAG+VIP++V I+ ++R  DA+   FP 
Sbjct: 363 LHNQDEINRL-----------GIKIGDSVIIRRAGDVIPQIVAIVADKRPDDAKDIVFPE 411

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S + +          A  RCTGGL C AQ+ E +KHF SR A +++GLG + ++
Sbjct: 412 SCPVCDSAIEKLEGE------AVARCTGGLYCKAQRKEAMKHFASRKALDVDGLGDKLIE 465

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
               +E     ++ PAD F L          + ++   G+ S  NL +++ K +  +L +
Sbjct: 466 QLVDAE----MVKSPADFFAL------DIAPLSSMERMGEKSAVNLVNALEKSKKTTLAK 515

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F++SLGIR VG   A++LA+++L+ +   Q           D  +L  V  VG I+AQ +
Sbjct: 516 FLYSLGIREVGEATAQNLAQHFLTLEAIEQA----------DLDALQAVSDVGVIVAQHV 565

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671
             F++   N+  + ALL+         +  +    +  +  V TGTL  + R+ A+  + 
Sbjct: 566 FNFFKEEHNLEVISALLEAGVHWPKIEKLALDELPLAGQVYVLTGTLNVMDRNSAKAKLQ 625

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LGA VS  +S KTD ++ G+  GSKL KAQ LGVK+MNE+  L +   
Sbjct: 626 SLGAKVSGSVSAKTDCLVAGEKAGSKLTKAQDLGVKVMNEDDMLAMFAD 674


>gi|255971181|ref|ZP_05421767.1| NAD-dependent DNA ligase [Enterococcus faecalis T1]
 gi|255962199|gb|EET94675.1| NAD-dependent DNA ligase [Enterococcus faecalis T1]
          Length = 676

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 240/714 (33%), Positives = 383/714 (53%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL     P
Sbjct: 6   LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + +  E
Sbjct: 63  DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+  I   +EVRGE 
Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+      R LN F++ +     + 
Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+EF+
Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  ++ 
Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+  
Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG + 
Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L   +        ++  AD++ L   Q  +      +    + S  N+Y +I   +  S+
Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ IA 
Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V +++N      +  L K                 V S  ++K +V TG L +  R +
Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTRAE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672


>gi|300114089|ref|YP_003760664.1| DNA ligase, NAD-dependent [Nitrosococcus watsonii C-113]
 gi|299540026|gb|ADJ28343.1| DNA ligase, NAD-dependent [Nitrosococcus watsonii C-113]
          Length = 675

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 241/708 (34%), Positives = 381/708 (53%), Gaps = 47/708 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A+  + +L++ I+ +D  YY    P+I DSEYD L R    +   +P+L      + P  
Sbjct: 7   AKDRIQALKELINNYDYAYYVMDNPLIPDSEYDRLIRELRVLEENYPELITL---DSPTQ 63

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G +    L +V H +P LSL   ++  +L  F  R+      +    + +  EPK+DG
Sbjct: 64  RVGAKPIKFLGEVKHEVPMLSLNNAFHEGELVDFHRRVKARLGIE---RVDYAAEPKLDG 120

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI-PRVLSLNIPEIIEVRGEVYISK 195
             +++ Y+ G  V  A RGDG +GEDV+  IR IPT+   +     P ++EVRGEVY+ +
Sbjct: 121 LAVSLLYQDGVLVQGATRGDGVTGEDVTHNIRTIPTVSLCLRDEKAPSLLEVRGEVYMPR 180

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF-AKG 253
             F  LN E I  G KP+ NPRNAA+G LR+L+           F +G+G+  +      
Sbjct: 181 KGFERLNREQIVKGEKPFVNPRNAAAGSLRQLDSRIAASRPLAIFCYGIGQVEQGILPDR 240

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E+L +++  G  +   ++      G   YY  M  +R  LPY+IDG+V+KVD  + Q+
Sbjct: 241 HSEVLCQLKQWGLRILPHLQVVEGLAGCKKYYQHMLDMRDKLPYEIDGVVFKVDYLNQQQ 300

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  AR+PRW +++KF  ++  T++LDI++Q+GRTG LTPVA L+P+ +GG  ++ ATL
Sbjct: 301 TLGSLARAPRWALAYKFPAQEELTQILDIEVQVGRTGALTPVAWLQPIFVGGVTVSKATL 360

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNE  I+            +DIR+GD V V+RAG+VIP++V +++ ER P ++ F  P  
Sbjct: 361 HNEGEIRR-----------KDIRIGDTVYVRRAGDVIPEIVKVVLEERLPGSRLFQMPRQ 409

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S +V++         A  RC+GGL C AQ+ E +KHF +R A +I GLG + ++ 
Sbjct: 410 CPVCDSEIVKEEG------RAIARCSGGLYCPAQRKEAVKHFAARRAMDINGLGDKLVEQ 463

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             K       I+  AD++ L + Q         +   G  S  NL ++I + ++ +L RF
Sbjct: 464 LVKR----GLIKDVADLYDLTKEQLVG------LERMGQKSAANLINAIQQSKHTTLPRF 513

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIR VG   A+ L K + S    A                L +V  +G ++A  I 
Sbjct: 514 LYALGIREVGEATAQVLTKEFGSLAALASASE----------ERLQQVVDIGPVVAAHIA 563

Query: 614 EFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            F++   N   +++L +         H+  +   +  +  V TGTL+ + R +A+E +  
Sbjct: 564 AFFRQLHNCQVIQSLQEAGVCWPELEHKAPIVRPLSGRTFVLTGTLESMTREQAKERLQA 623

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           LG  VS  +S  TD +I+G  PGSKL KA+ L + I++E  FL LL  
Sbjct: 624 LGGKVSGSVSPHTDYLIIGAKPGSKLIKARNLEITILDETNFLNLLDD 671


>gi|206890248|ref|YP_002249789.1| DNA ligase, NAD-dependent [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|254781443|sp|B5YIF8|DNLJ_THEYD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206742186|gb|ACI21243.1| DNA ligase, NAD-dependent [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 670

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 239/711 (33%), Positives = 386/711 (54%), Gaps = 50/711 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E  +KE+  L +E++YH+  YY    P+I D EYD + RR   +   +  +     P+ 
Sbjct: 5   PEDIKKEIEKLVKELNYHNYRYYVLDSPVISDEEYDMMLRRLKELEEKWGYIL----PDS 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G   +    K  H  P LSL+  ++IE+LR F  R+ R     +   + +T+EPK
Sbjct: 61  PTQRVGAAPSEKFEKAEHREPMLSLDNAFSIEELRDFDARVKRLLGSSE--EVEYTVEPK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEV 191
            DG  + + Y+ G    A+ RGDG+ GED++  I+ I  IP  +     IPE I++RGEV
Sbjct: 119 YDGLAVELSYKDGLLYKASTRGDGYVGEDITQNIKTIKAIPLRIEGVDKIPEEIDIRGEV 178

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y++ ++F  +N E I  G   +ANPRNAASG +R+L+P+   +R L    +G+G    I 
Sbjct: 179 YLNIDEFERINKERIEKGEPVFANPRNAASGSVRQLDPSITASRRLYMSCYGIGYVKGIE 238

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q E ++ ++   FPV   V+ A     ++    E++ +R   P++ DG V KV+ F 
Sbjct: 239 FKSQIEFIEWLKKGRFPVPAYVKLAKGIEEVIEAIKEIEKLRQGYPFETDGAVVKVNSFE 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG + R PRW I++K+   Q  T+L DI   +GRTG++TPVA LEPV IGG  ++ 
Sbjct: 299 LQRKLGTKTREPRWAIAYKYPAHQGITKLKDILASVGRTGVITPVAVLEPVKIGGVTVSR 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           +TLHN D ++            +DIRVGD V+V+RAGEVIP ++ ++ + R  + +    
Sbjct: 359 STLHNWDEVER-----------KDIRVGDYVIVERAGEVIPHIIGVVKDRRTGEEKEVKI 407

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S+ VR+      K            C AQ  ER+KHF SR A NIEGLG + 
Sbjct: 408 PEHCPVCGSKTVREPGEVAVK-------CINFNCPAQVEERIKHFASRRAMNIEGLGDKT 460

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++           I+   D++ L++           + GF ++S   L ++I K +  +L
Sbjct: 461 VELLHNK----GIIKHFVDLYKLRQEDIKG------LPGFAELSSKKLIEAIAKSKKTTL 510

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R +++LGI  VG   ++ LA+++   ++            +     L+++P +G+  A+
Sbjct: 511 SRLLYALGISQVGEYASKLLAQHFRKLEDLY----------HIKAEKLVQIPQIGEKTAK 560

Query: 611 AIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            I +F+ N  N+ A+E L +      +    E+   S ++    V TGTL K  R + +E
Sbjct: 561 TIEQFFNNEENLKAIEELKRMGLKVENPEFEEEKKPSPLKGLTFVITGTLPK-PREEVKE 619

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + + G  VS+ +S+ TD ++VG++PGSKL KAQ L VK ++ E+FL +L+
Sbjct: 620 MIEKAGGKVSSSVSKNTDYLLVGEDPGSKLAKAQALRVKTLSYEEFLKMLE 670


>gi|91793866|ref|YP_563517.1| DNA ligase, NAD-dependent [Shewanella denitrificans OS217]
 gi|123165936|sp|Q12L82|DNLJ_SHEDO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91715868|gb|ABE55794.1| DNA ligase, NAD-dependent [Shewanella denitrificans OS217]
          Length = 670

 Score =  552 bits (1421), Expect = e-155,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 383/711 (53%), Gaps = 51/711 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + ++++L  E++ H+  YY    P + D+ YD L ++  A+    P+L +S   + 
Sbjct: 1   MSAIQLQIANLVNELNQHNIKYYVDDAPSVTDAYYDKLMQQLLALEAEHPELIQS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG       +VTH  P LSL+  +   D   F  RI          ++ +  EPK
Sbjct: 58  PSRRVGGHALDKFSQVTHLKPMLSLDNAFEQADFEAFNKRITDKVG-----TVDYVCEPK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  ++I Y  G+F  AA RGDG  GED++  +R I +IP  L  +  PE++EVRGEV+
Sbjct: 113 LDGLAVSITYRNGQFERAATRGDGTVGEDITENVRTIKSIPMGLRGDGYPELVEVRGEVF 172

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS---E 248
           + K  F ALN    A G K + NPRNAA+G LR+L+     +R L F+ + LG      +
Sbjct: 173 MPKAAFDALNARQQAKGDKTFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEGEVQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 +  L +++  G PV+  V+  ++   + +YY+++ + R  L Y+IDG+V KV+ 
Sbjct: 233 PMEPSHFGQLAQLKRWGLPVSQEVKLCDSLEKVYAYYDDILNRRGQLSYEIDGVVIKVNA 292

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q  LG  A++PRW I++KF  ++  T L  +D Q+GRTG +TPVARL+ V +GG  +
Sbjct: 293 IPKQLSLGFVAKAPRWAIAYKFPAQEEMTLLESVDFQVGRTGAVTPVARLQAVFVGGVTV 352

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            +++GD V+++RAG+VIP++V I+  +R  DAQ  
Sbjct: 353 SNATLHNADEIARL-----------GVKIGDTVIIRRAGDVIPQIVAIVPEKRPQDAQNI 401

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP+CQS V R          A  RC+GGL C AQ+ E +KHF SR A NI+G+G 
Sbjct: 402 VFPTHCPVCQSLVERLEGE------AVARCSGGLFCEAQRKEAIKHFASRKALNIDGMGD 455

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     ++ PAD+F L        + +  +      S T L  +I+  +  
Sbjct: 456 KIVEQLIDKE----LVQSPADLFGLTA------SMMTMLERMAMKSATKLVAAIDAAKTT 505

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI+SLGIR VG   A +LA ++ S     +               L+ V  VG+I+
Sbjct: 506 TLARFIYSLGIREVGEATAANLANHFKSLAAVREA----------GVEQLLEVADVGEIV 555

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQ 667
           A+ I  F+    N+  V+ LL                  ++ +  V TGTL ++ R++A+
Sbjct: 556 AKHIRHFFDQAHNLEVVDKLLAAGINWPEITAVAEDELRLKGQTWVLTGTLTQLNRNEAK 615

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +  LGA V+  +S+ TD ++ G+  GSKL KAQ+LGVK+++E + L  L
Sbjct: 616 AQLQALGAKVAGSISKNTDCLVAGEAAGSKLAKAQELGVKVIDETELLVFL 666


>gi|300861866|ref|ZP_07107946.1| DNA ligase (NAD(+)) [Enterococcus faecalis TUSoD Ef11]
 gi|300848391|gb|EFK76148.1| DNA ligase (NAD(+)) [Enterococcus faecalis TUSoD Ef11]
          Length = 676

 Score =  552 bits (1421), Expect = e-155,   Method: Composition-based stats.
 Identities = 241/714 (33%), Positives = 383/714 (53%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL     P
Sbjct: 6   LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + +  E
Sbjct: 63  DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+  I   +EVRGE 
Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+      R LN F++ +     + 
Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q+E L+++  +GF  N   +   +   + SY  E    RSTLPY+IDG+V KV+EF+
Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWSYIEEYHEKRSTLPYEIDGIVIKVNEFA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  ++ 
Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+  
Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG + 
Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L   +        ++  AD++ L   Q  +      +    + S  N+Y +I   +  S+
Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ IA 
Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V +++N      +  L K                 V S  ++K +V TG L +  R +
Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672


>gi|315145225|gb|EFT89241.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2141]
          Length = 676

 Score =  552 bits (1421), Expect = e-155,   Method: Composition-based stats.
 Identities = 241/714 (33%), Positives = 382/714 (53%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL     P
Sbjct: 6   LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + +  E
Sbjct: 63  DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+  I   +EVRGE 
Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+      R LN F++ +     + 
Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q+E L+++  +GF  N   +   +   + SY  E    RSTLPY+IDG+V KV+EF+
Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWSYIEEYHEKRSTLPYEIDGIVIKVNEFA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G   + 
Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTGSR 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+  
Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG + 
Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L   +        ++  AD++ L   Q  +      +    + S  N+Y +I   +  S+
Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ IA 
Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V +++N      +  L K                 V S  ++K +V TG L +  R +
Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672


>gi|88810628|ref|ZP_01125885.1| DNA ligase, NAD-dependent [Nitrococcus mobilis Nb-231]
 gi|88792258|gb|EAR23368.1| DNA ligase, NAD-dependent [Nitrococcus mobilis Nb-231]
          Length = 672

 Score =  552 bits (1421), Expect = e-155,   Method: Composition-based stats.
 Identities = 251/706 (35%), Positives = 398/706 (56%), Gaps = 45/706 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
               + +++L  +I  H+  Y+    P + D++YD L R   A+    PDL     P+ P
Sbjct: 7   AAVERRVAALRDQIEQHNYRYFVLDDPQVSDADYDVLMRELQALEADHPDLV---SPDSP 63

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G +   +  +  H +P LSL+  ++  +L +F  RI         N I +  EPK+
Sbjct: 64  TQRVGAKPVEAFGEARHGVPMLSLDNAFDAGELGEFDRRIRERLGI---NRIAYMAEPKL 120

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  + +RYE+G+ V    RGDG  GED++A IR + TIP  L     PE+IEVRGE+ I
Sbjct: 121 DGLSVNLRYEQGRLVQGGTRGDGQVGEDITANIRTLRTIPLRLRGKGWPELIEVRGEIVI 180

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            K DF  LN   +  G + +ANPRNAA+G LR+L+P     R L FF  G+G++ E+ A 
Sbjct: 181 RKADFKHLNTLRLEAGERLFANPRNAAAGSLRQLDPRVTARRPLTFFAFGIGESREVIAG 240

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q ++L+++   GFPV   V+  +     ++YY  + + R TLP++IDG VYKVD+ S Q
Sbjct: 241 RQSQILERLHGWGFPVYERVQVVSGVEECLAYYRRLMAQRETLPFEIDGTVYKVDDLSSQ 300

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  AR+PRW +++K   ++  + +LDI+  +GRTG++TPVARLEPV +GG ++ +AT
Sbjct: 301 QRLGFTARAPRWAVAYKLPAREGLSVVLDIEPSVGRTGVITPVARLEPVPLGGVIVRHAT 360

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED ++            +D+R+GD V+++RAG+VIP+++ +   +R   AQP+  P 
Sbjct: 361 LHNEDEVRR-----------KDVRIGDTVMLRRAGDVIPEIIGVQPEKRPQGAQPWRMPL 409

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C + V+R       +  AAHRC GGL C+AQ+   + HF SR A +I+GLG++ ++
Sbjct: 410 KCPVCSAEVMR------LEHQAAHRCLGGLYCAAQRTGAILHFASRRAMDIDGLGEKLVE 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      +   AD+++L+R Q         +   G+ S  NL  +I+  R  +L R
Sbjct: 464 QLVGR----GLVATVADLYSLERAQLV------ELERMGERSAGNLLRAIDASRATTLAR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+++LGI  VG   A+ LA++Y       +              +L R+P +G ++AQ I
Sbjct: 514 FLYALGIPEVGEVTAKRLAEHYGDLDPLERATE----------EALTRLPDIGPVLAQRI 563

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
             F+  P N   ++AL +           N S+ +  +  V TGTL+   R +AQE +  
Sbjct: 564 THFFAQPHNREVIDALRRSGLHWSVPDGANQSTPLAGRVFVLTGTLKGYTREEAQERIEA 623

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           LG  V+  +S+ TD +IVG+ PGSK +KA QLG+ +++E  F  L+
Sbjct: 624 LGGRVTGHVSKNTDYMIVGEAPGSKRDKAVQLGITLLDESGFRQLI 669


>gi|255973805|ref|ZP_05424391.1| NAD-dependent DNA ligase [Enterococcus faecalis T2]
 gi|256964440|ref|ZP_05568611.1| NAD-dependent DNA ligase [Enterococcus faecalis HIP11704]
 gi|257080988|ref|ZP_05575349.1| NAD-dependent DNA ligase [Enterococcus faecalis E1Sol]
 gi|307272536|ref|ZP_07553789.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0855]
 gi|307284516|ref|ZP_07564678.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0860]
 gi|255966677|gb|EET97299.1| NAD-dependent DNA ligase [Enterococcus faecalis T2]
 gi|256954936|gb|EEU71568.1| NAD-dependent DNA ligase [Enterococcus faecalis HIP11704]
 gi|256989018|gb|EEU76320.1| NAD-dependent DNA ligase [Enterococcus faecalis E1Sol]
 gi|306503193|gb|EFM72447.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0860]
 gi|306510821|gb|EFM79838.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0855]
 gi|315151576|gb|EFT95592.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0012]
 gi|315170712|gb|EFU14729.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1342]
 gi|327534312|gb|AEA93146.1| NAD-dependent DNA ligase LigA [Enterococcus faecalis OG1RF]
          Length = 676

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 240/714 (33%), Positives = 383/714 (53%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL     P
Sbjct: 6   LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + +  E
Sbjct: 63  DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+  I   +EVRGE 
Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+      R LN F++ +     + 
Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+EF+
Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  ++ 
Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+  
Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG + 
Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L   +        ++  AD++ L   Q  +      +    + S  N+Y +I   +  S+
Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ IA 
Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V +++N      +  L K                 V S  ++K +V TG L +  R +
Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672


>gi|315161924|gb|EFU05941.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0645]
          Length = 676

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 241/714 (33%), Positives = 383/714 (53%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL     P
Sbjct: 6   LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + +  E
Sbjct: 63  DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+  I   +EVRGE 
Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+      R LN F++ +     + 
Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q+E L+++  +GF  N   +   +   + SY  E    RSTLPY+IDG+V KV+EF+
Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWSYIEEYHEKRSTLPYEIDGIVIKVNEFA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  ++ 
Sbjct: 297 LQDELGFTLKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+  
Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG + 
Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L   +        ++  AD++ L   Q  +      +    + S  N+Y +I   +  S+
Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ IA 
Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V +++N      +  L K                 V S  ++K +V TG L +  R +
Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672


>gi|159897339|ref|YP_001543586.1| DNA ligase, NAD-dependent [Herpetosiphon aurantiacus ATCC 23779]
 gi|254781348|sp|A9AXP4|DNLJ_HERA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|159890378|gb|ABX03458.1| DNA ligase, NAD-dependent [Herpetosiphon aurantiacus ATCC 23779]
          Length = 673

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 245/710 (34%), Positives = 365/710 (51%), Gaps = 50/710 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           EQ     +SL  E++ ++  YY    P++ D++YD+L     AI   +P+L     P+ P
Sbjct: 5   EQTVARAASLRDELNLYNHHYYTLDAPLVSDAQYDSLLNELRAIEAEYPEL---RTPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G        KV H +P LSL   +N +DL  +  R  +         + +T+EPKI
Sbjct: 62  TQRVGSAPLSKFPKVQHPVPMLSLGNAFNADDLAAWRRRAEQIIG---TQPMSYTVEPKI 118

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGE 190
           DG  + + Y  G F   A RG+G  GED++A +R I  +P  L        PE IEVRGE
Sbjct: 119 DGLAVALTYINGVFSVGATRGNGEIGEDITANLRTIRDVPLRLQPIDGQALPERIEVRGE 178

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+    F  LN+     G K +ANPRNAA+G LR+L+ T   +R L FF + +G  S +
Sbjct: 179 VYLPIESFNQLNERQAHAGEKVFANPRNAAAGSLRQLDSTITASRPLRFFAYAVGPFSGV 238

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             K Q + L  +R  GF VN   R    F  ++ Y +E  S R +L Y++DG+V K+++F
Sbjct: 239 ELKSQAQTLDTLRTYGFSVNPDTRLFADFEAVIEYCHEWMSRRESLSYEVDGVVVKINDF 298

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           ++Q++LG   R PRW I++KF  ++ +T LL+I I +GRTG L P A LEPV++GG  + 
Sbjct: 299 AMQRELGVVGRDPRWAIAYKFPAREETTTLLNIVINVGRTGKLIPNAVLEPVSLGGTTVQ 358

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           +A+LHN DYI             RDIR+GDRV+VKRAG+VIP V+  IV  R  D + + 
Sbjct: 359 HASLHNADYI-----------ISRDIRIGDRVVVKRAGDVIPYVIGPIVEARTGDERVWP 407

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C   V +  +                 C A+ +  ++H+VSR A +I G+G++
Sbjct: 408 APTHCPTCGQPVEQIGDE-------VDIYCVNNTCPARLIRSIEHWVSRGAMDIVGMGER 460

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
           Q   F +       I+   DI+ L      +        G+G+  V NL ++I + +   
Sbjct: 461 QASQFVE----MGLIKSIPDIYRL------TVDSFGGREGYGERRVANLLNAIEESKRRP 510

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L+R I +LGI  VG   A  LA+Y+ S    AQ               L  +  +G   A
Sbjct: 511 LDRVITALGINGVGTVAAADLARYFRSLPALAQAT----------IEQLTAIEGIGGSTA 560

Query: 610 QAIVEFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           Q++V+F+  P N   +  LL            +  S  +  K  V TGTL  I R  AQ 
Sbjct: 561 QSVVDFFNTPANQQLIAELLALGLKAEPSEVAELQSDRLAGKSFVITGTLPGISREAAQA 620

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +   G  V   +S+KTD ++ G+  GSKL KAQ LGVK+++ ++   LL
Sbjct: 621 LIEAHGGKVGGSVSKKTDYLLAGEAAGSKLTKAQSLGVKVLSMDELHALL 670


>gi|229512467|ref|ZP_04401940.1| DNA ligase [Vibrio cholerae TMA 21]
 gi|229350548|gb|EEO15495.1| DNA ligase [Vibrio cholerae TMA 21]
          Length = 669

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 242/711 (34%), Positives = 386/711 (54%), Gaps = 47/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    ++L+ L Q +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSNVEQKLTELRQILHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+         ++  F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250
           + K  F  LN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEVLNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  +A+   F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+        ++  +   G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+++LGIR VG   A +LA+++LS +   Q                I VP VG I+A 
Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVIVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+ 
Sbjct: 559 HLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKA 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LGA V+  +S+ TD++  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 619 ALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669


>gi|327438552|dbj|BAK14917.1| NAD-dependent DNA ligase [Solibacillus silvestris StLB046]
          Length = 665

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 240/713 (33%), Positives = 379/713 (53%), Gaps = 56/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +  + ++ L + +  +   YY   KP++ DS YD L     A+  A P+      P+ 
Sbjct: 1   MNEIEQRIAELNKLLHEYGYAYYVLDKPVVEDSVYDQLLHELIALEEANPEFIY---PDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG +     KVTH    LSL   +N EDLR F  +I +   K       +  E K
Sbjct: 58  PTQRVGGMVLEGFKKVTHETAMLSLSNAFNEEDLRDFDRKIEQAIGKNY----SYVCELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I++RYE G FV  A RGDG  GED++A ++ I  IP  L+  +   +EVRGE Y+
Sbjct: 114 IDGLAISLRYENGVFVQGATRGDGTVGEDITANLKTIRAIPLRLNEPV--TLEVRGEAYM 171

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFA 251
            K  F  LN+     G + +ANPRNAA+G LR+L+P          F     G       
Sbjct: 172 PKKSFEKLNERRAENGEELFANPRNAAAGSLRQLDPKIAASRNLSTFIYAVGGDGESYGI 231

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            G +EML+ +  LGFP N       T   ++++  +    R  L Y+IDG+V KV+ ++ 
Sbjct: 232 DGHWEMLKYLEELGFPSNKEREYCETIEDVLAFIEKWTEARPNLSYEIDGIVIKVNRYAH 291

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A L PV + G  ++ A
Sbjct: 292 QDELGFTAKSPRWAIAYKFPAEEVITKLLDIELTVGRTGVITPTAILTPVLVAGTTVSRA 351

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHNED I+            +DIR+ D V+V++AG++IP++V +++ +R  DA P+  P
Sbjct: 352 SLHNEDLIR-----------EKDIRIDDTVIVRKAGDIIPQIVGVVLEQRPDDAVPYKMP 400

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C   V             A RC     C AQ  E +KHFVSR+A NI+GLG++ +
Sbjct: 401 THCPACDEEV------VRIDTDVALRCVNPQ-CPAQIAEGVKHFVSRNAMNIDGLGEKVV 453

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   +       I+  A ++ L   Q  +      +   G  S TNL +++ + ++ SLE
Sbjct: 454 EQLLRE----GYIQDVAGLYELTVEQLIN------LERMGQKSATNLVEALIQSKDNSLE 503

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +F LGIRHVG + A+ LA ++ +                     L  +  +GD +A++
Sbjct: 504 RLLFGLGIRHVGEKAAKILAAHFETIDALMVATE----------EDLKDIHEIGDKMAES 553

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IV ++ N +    +E L         +      +  ++    K +V TG LQ++ R++A+
Sbjct: 554 IVAYFANEQVQQLIERLKGFGLNMSYKGKKIVVEAGANPFAGKTIVLTGKLQQLTRNEAK 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             + QLG  V+  +S+KTD++IVG++ GSKLEKAQ LG++I +E   + L++Q
Sbjct: 614 AKIEQLGGTVAGSVSKKTDLVIVGEDAGSKLEKAQSLGIEIWDE---VRLIEQ 663


>gi|257086082|ref|ZP_05580443.1| NAD-dependent DNA ligase [Enterococcus faecalis D6]
 gi|256994112|gb|EEU81414.1| NAD-dependent DNA ligase [Enterococcus faecalis D6]
 gi|315025779|gb|EFT37711.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2137]
          Length = 676

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 239/714 (33%), Positives = 383/714 (53%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL     P
Sbjct: 6   LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + +  E
Sbjct: 63  DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+  I   +EVRGE 
Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+      R LN F++ +     + 
Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+EF+
Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  ++ 
Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D+I+            +DIR+ D +++ +AG++IP+V  ++V +R  D+QP+  
Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHIIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG + 
Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L   +        ++  AD++ L   Q  +      +    + S  N+Y +I   +  S+
Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ IA 
Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V +++N      +  L K                 V S  ++K +V TG L +  R +
Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672


>gi|239501241|ref|ZP_04660551.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB900]
          Length = 678

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 253/720 (35%), Positives = 380/720 (52%), Gaps = 47/720 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L ++   
Sbjct: 1   MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E
Sbjct: 58  DSPTTKVGGQALSKFESVTHVVPMLSLGNVFNKEDLFAFARRVEERL---PNQKVQYEVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL     EI   +EVR
Sbjct: 115 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P         F+ +G+ +  
Sbjct: 175 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 234

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 235 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+
Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 403

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 404 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   +       ++  ADI+ L   ++     +  I   G+ SV NL D+I   +
Sbjct: 458 GDRWVESLLR----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +               +  +L + P VGD
Sbjct: 510 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------NVEALKKTPDVGD 559

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L+                 +  +  V TGTL+++ R +A
Sbjct: 560 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL 
Sbjct: 619 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTLS 678


>gi|89075460|ref|ZP_01161871.1| DNA ligase [Photobacterium sp. SKA34]
 gi|89048732|gb|EAR54303.1| DNA ligase [Photobacterium sp. SKA34]
          Length = 670

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 250/696 (35%), Positives = 395/696 (56%), Gaps = 47/696 (6%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
            YH   YY    P I D+EYD + ++   I    P+       + P  ++GG       +
Sbjct: 17  DYHGHRYYVEDNPEIPDAEYDRMMQQLLKIEAEHPEWVTV---DSPSQRVGGAALEGFTQ 73

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H I  LSL+  +N +DLR F  R+    +     +  +  EPK+DG  +++ YEKG  
Sbjct: 74  VKHEIAMLSLDNAFNDDDLRAFQKRLQDRLRS--GATFSYCCEPKLDGLAVSLMYEKGVL 131

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GE+++  +R I  IP  L  +  PE +EVRGEV++ K  F  LN + + 
Sbjct: 132 VQAATRGDGATGENITHNVRTIRAIPLKLQGDDWPERLEVRGEVFMPKKGFEELNAKALK 191

Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFAKGQYEMLQKMRCLG 265
            G K +ANPRNAA+G LR+L+P    TR L+F+ + +G       A  QYE L +++  G
Sbjct: 192 KGDKAFANPRNAAAGSLRQLDPKITATRPLSFYAYAVGVVDGRELANTQYERLCQLKAWG 251

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
            P+   +R+ ++   +++Y+  +   R +L Y+IDG+V KVD+   Q+QLG  AR+PRW 
Sbjct: 252 LPMCPEIRKVDSIEEVIAYHQNIGEKRQSLGYEIDGVVIKVDDVDTQQQLGFVARAPRWA 311

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++NATLHN D +  L   
Sbjct: 312 IAYKFPAQEEMTTLNNVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEVARL--- 368

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                    + +GD V+++RAG+VIP++  ++ + R  +AQ   FP+ CP+CQS+V R  
Sbjct: 369 --------GVMIGDTVIIRRAGDVIPQIASVVESRRPANAQAIVFPTECPVCQSKVERIE 420

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                   A  RCTGGL C AQ+ E LKHFVSR A +++G G++ ++     E     + 
Sbjct: 421 GE------AVARCTGGLFCQAQRKEALKHFVSRKALDVDGCGEKVIEQLVDRE----MVT 470

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
            PAD+F      + S  ++  +   G  S   L D++N  +  +L RFI+SLGIR VG  
Sbjct: 471 TPADLF------KFSAGEVTVLERMGPKSAQKLVDALNASKLTTLPRFIYSLGIREVGEA 524

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A +LA Y+ + ++ +Q               LI VP VG I+A  I  F++   N+  V
Sbjct: 525 TAANLANYFETLESISQATK----------DQLIEVPDVGGIVAAHIFNFFREEHNMVVV 574

Query: 626 EALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
             L +     P I + +++V   ++ K +V TG+L ++ R  A+  + +LGA V+  +S+
Sbjct: 575 NELQEVGIHWPEIEKIDEDVELPLDGKVVVLTGSLSQLTRSDAKAALQKLGAKVTGSVSK 634

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           KTD+++ G+  GSKL KAQ+LG++I +E++ + L+ 
Sbjct: 635 KTDLLVAGEAAGSKLTKAQELGIEIWDEQKLVDLMA 670


>gi|258544861|ref|ZP_05705095.1| DNA ligase, NAD-dependent [Cardiobacterium hominis ATCC 15826]
 gi|258519884|gb|EEV88743.1| DNA ligase, NAD-dependent [Cardiobacterium hominis ATCC 15826]
          Length = 668

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 251/705 (35%), Positives = 382/705 (54%), Gaps = 48/705 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            L++L +EI  HD  YY    P+I D+EYDAL R   A+  A  +   +   + P  ++G
Sbjct: 6   RLAALREEIRAHDHAYYVLDNPLIADAEYDALLRELRALEAASGEPVPA---DSPSQRVG 62

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G+ + +   V H++P LSL+ +++ E+   F+ R+       D + +  + EPK DG  I
Sbjct: 63  GKADGAFAPVAHAVPMLSLDNVFSEEEFAAFVKRLQERL---DHDELLLSAEPKFDGLAI 119

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198
           ++RYE G    AA RGDG +GEDV+A +R I  IP  L     P +IE+RGE+Y+ K  F
Sbjct: 120 SLRYENGVLTRAATRGDGATGEDVTANVRTIRAIPLRLLDATPPAVIEIRGEIYMPKAAF 179

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEIFAKGQYE 256
            ALN      G K +ANPRNAA+G LR+L+P    +R+L+F+ +GLG             
Sbjct: 180 AALNAAAERDGGKTFANPRNAAAGSLRQLDPAITASRHLSFYAYGLGAHDGYALPATYSA 239

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L + R  G PV       ++    V+Y + +   R  LPY+IDG+VYK D ++ Q+  G
Sbjct: 240 LLAQYRDWGVPVCPLQESLSSAAAAVAYMDALGKKRHDLPYEIDGVVYKADRYADQQAAG 299

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW I+ KF   + +T +  ID+Q+GRTG +TPVARL PV +GG  +TNATLHN 
Sbjct: 300 FVSRAPRWAIAWKFPAVEKTTVVEAIDVQVGRTGAVTPVARLRPVEVGGVTVTNATLHNA 359

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D +             +D+RVGD V V+RAG+VIP++V  ++  R  D+QPF+ P+ CP+
Sbjct: 360 DEVAR-----------KDVRVGDTVFVRRAGDVIPEIVKTVLEARPADSQPFAMPTHCPV 408

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S ++R          A  RC+GGL C AQ+++ L HF SR A +I+GLG + ++   +
Sbjct: 409 CESEIIRPEGE------AVARCSGGLHCRAQRVQALIHFASRKALDIQGLGDKLIEQLVQ 462

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +  PAD+F L      +      +    + S  N+  ++   +  +L RFI++
Sbjct: 463 D----GRVHSPADLFAL------TLADWAALPRMAEKSAQNILAALEAAKATTLPRFIYA 512

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A  LA++Y                       L  +  +G ++AQ I  F+
Sbjct: 513 LGIREVGNVSAELLARHYRELPALLAASE----------DDLQAIDGIGPVMAQYIRHFF 562

Query: 617 QNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            +  N   + AL       P +        S +  K +V TGTL  + R +A  ++ +LG
Sbjct: 563 LDDANRAVIAALQAAGIHWPVVEAPVIAADSPLAGKTVVITGTLPTMTRDEAAAHIARLG 622

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              ++ +S+KTD ++ GD  GSKLEKAQ LGV I++E Q L  L+
Sbjct: 623 GKTASAVSKKTDYLLAGDKAGSKLEKAQSLGVAIIDEAQLLAWLE 667


>gi|227517688|ref|ZP_03947737.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0104]
 gi|257083650|ref|ZP_05578011.1| NAD-dependent DNA ligase [Enterococcus faecalis Fly1]
 gi|227074843|gb|EEI12806.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0104]
 gi|256991680|gb|EEU78982.1| NAD-dependent DNA ligase [Enterococcus faecalis Fly1]
 gi|315146961|gb|EFT90977.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4244]
          Length = 676

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 240/714 (33%), Positives = 383/714 (53%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL     P
Sbjct: 6   LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + +  E
Sbjct: 63  DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+  I   +EVRGE 
Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+      R LN F++ +     + 
Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+EF+
Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  ++ 
Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+  
Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG + 
Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L   +        ++  AD++ L   Q  +      +    + S  N+Y +I   +  S+
Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ IA 
Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLSTLSRAT----------AEEIVALDSIGETIAD 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V +++N      +  L K                 V S  ++K +V TG L +  R +
Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672


>gi|221632243|ref|YP_002521464.1| DNA ligase, NAD-dependent [Thermomicrobium roseum DSM 5159]
 gi|254781441|sp|B9KXM2|DNLJ_THERP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221155911|gb|ACM05038.1| DNA ligase, NAD-dependent [Thermomicrobium roseum DSM 5159]
          Length = 695

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 233/720 (32%), Positives = 360/720 (50%), Gaps = 53/720 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R  +  L + I  ++  YY  + P + D+EYDAL          +P+L     P+ P 
Sbjct: 15  EVRARVEELRRLIQRYNYEYYVLNAPTVSDAEYDALMLELRRWEEQYPELV---TPDSPT 71

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G         V H IP LSL  +++  ++R +  R+YR   ++D   + F  EPK+D
Sbjct: 72  QRVGAPPAEGFATVQHEIPMLSLGNVFSDGEIRAWAERVYRLSGRQD---VEFVTEPKVD 128

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEV 191
           G  +++ Y  G  V  A RGDG++GEDV+  +R I  IP  L        P ++EVRGEV
Sbjct: 129 GLAVSLLYRDGVLVRGATRGDGYTGEDVTNNVRTIRMIPLRLYPPEGVIVPPVLEVRGEV 188

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEI 249
           Y++  DF  LN E    G   +ANPRNAA+G LR+L+P+   +R L F    +G      
Sbjct: 189 YMNVRDFERLNRERGEQGLPLFANPRNAAAGSLRQLDPSVTASRPLRFAAWDIGLWEGTE 248

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                   L+ +R L  PV    R   +   +++  +  +  R  L ++ DG+V KV++ 
Sbjct: 249 PPATHLATLEFLRQLQIPVVPDYRLCRSVDEVIAECHRWQERRDALEFEADGVVIKVNDR 308

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +L + LG   R PR   ++KF   + +T + D+   +GRTG LTPVA LEPV IGG ++ 
Sbjct: 309 ALYQALGVVGREPRGATAYKFPAHEKTTIVRDVIWSVGRTGKLTPVAVLEPVEIGGVIVE 368

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNE+ I+ L            + +GD V+V+R G+VIPKVV  I   R  D +P  
Sbjct: 369 RATLHNEEEIRRL-----------GLLIGDAVVVQRRGDVIPKVVATIPQRRDGDERPVD 417

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C +  +R             R      C A+    ++HF SR+A +IEGLG++
Sbjct: 418 IPRQCPVCGAHTIRLEGE-------VDRYCPNPNCPARLKASVRHFASRNAMDIEGLGEK 470

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
             D F         IR   D++ +         ++  + GFG   V NL  +I   +N  
Sbjct: 471 ISDLFVD----LGIIRSLPDLYEI------DWARVLQLEGFGPKKVENLRKAIEASKNRP 520

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF+F+LGIRHVG   A+ LA ++ S     +               L+++P  G  +A
Sbjct: 521 FARFLFALGIRHVGERNAQLLADHFRSIDRLMEAT----------IDELLQIPGFGPAVA 570

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKA 666
           Q++ EF++ P+N   +E   +               V   +  K +V TG L+ + R +A
Sbjct: 571 QSVFEFFREPKNREMIERFRRLGVRMAEEEAAAVATVQGPLAGKTVVLTGRLETLTRSQA 630

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           +E + + GA V+  +SRKTD +  G +PGSK  +AQQLGV I+ EE  L +L++    + 
Sbjct: 631 EELLRRAGAHVTDSVSRKTDYVFAGADPGSKYVRAQQLGVPILGEEDLLRMLRESGIEVE 690


>gi|256959858|ref|ZP_05564029.1| NAD-dependent DNA ligase [Enterococcus faecalis Merz96]
 gi|293385046|ref|ZP_06630880.1| DNA ligase, NAD-dependent [Enterococcus faecalis R712]
 gi|293389317|ref|ZP_06633778.1| DNA ligase, NAD-dependent [Enterococcus faecalis S613]
 gi|312906035|ref|ZP_07765048.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 512]
 gi|312909381|ref|ZP_07768237.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 516]
 gi|256950354|gb|EEU66986.1| NAD-dependent DNA ligase [Enterococcus faecalis Merz96]
 gi|291077724|gb|EFE15088.1| DNA ligase, NAD-dependent [Enterococcus faecalis R712]
 gi|291081339|gb|EFE18302.1| DNA ligase, NAD-dependent [Enterococcus faecalis S613]
 gi|310628030|gb|EFQ11313.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 512]
 gi|311290405|gb|EFQ68961.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 516]
          Length = 676

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 241/714 (33%), Positives = 384/714 (53%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL     P
Sbjct: 6   LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + +  E
Sbjct: 63  DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+  I   +EVRGE 
Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+      R LN F++ +     + 
Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+EF+
Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  ++ 
Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+  
Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG + 
Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L   +        ++  AD++ L   Q  +      +    + S  N+Y +I   +  S+
Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+IIA 
Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLSTLSRAT----------AEEIVALDSIGEIIAD 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V +++N      +  L K                 V S  ++K +V TG L +  R +
Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672


>gi|312900318|ref|ZP_07759629.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0470]
 gi|311292506|gb|EFQ71062.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0470]
          Length = 676

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 239/714 (33%), Positives = 382/714 (53%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL     P
Sbjct: 6   LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + +  E
Sbjct: 63  DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+  I   +EVRGE 
Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+      R LN F++ +     + 
Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTL Y+IDG+V KV+EF+
Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLTYEIDGIVIKVNEFA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  ++ 
Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+  
Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG + 
Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L   +        ++  AD++ L   Q  +      +    + S  N+Y +I   +  S+
Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ IA 
Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V +++N      +  L K                 V S  ++K +V TG L +  R +
Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672


>gi|332852097|ref|ZP_08433924.1| DNA ligase [Acinetobacter baumannii 6013150]
 gi|332867495|ref|ZP_08437648.1| DNA ligase [Acinetobacter baumannii 6013113]
 gi|332872654|ref|ZP_08440622.1| DNA ligase [Acinetobacter baumannii 6014059]
 gi|332729469|gb|EGJ60808.1| DNA ligase [Acinetobacter baumannii 6013150]
 gi|332733912|gb|EGJ65057.1| DNA ligase [Acinetobacter baumannii 6013113]
 gi|332739183|gb|EGJ70042.1| DNA ligase [Acinetobacter baumannii 6014059]
          Length = 683

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 253/720 (35%), Positives = 380/720 (52%), Gaps = 47/720 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L ++   
Sbjct: 6   MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQA--- 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E
Sbjct: 63  DSPTTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVE 119

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL     EI   +EVR
Sbjct: 120 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P         F+ +G+ +  
Sbjct: 180 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 239

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 240 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 299

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 300 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 359

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+
Sbjct: 360 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 408

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 409 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 462

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   +       ++  ADI+ L   ++     +  I   G+ SV NL D+I   +
Sbjct: 463 GDRWVESLLR----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 514

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +               +  +L + P VGD
Sbjct: 515 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------NVEALKKTPDVGD 564

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L+                 +  +  V TGTL+++ R +A
Sbjct: 565 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 623

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL 
Sbjct: 624 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTLS 683


>gi|294085891|ref|YP_003552651.1| DNA ligase (NAD+) [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292665466|gb|ADE40567.1| DNA ligase (NAD+) [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 696

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 298/719 (41%), Positives = 434/719 (60%), Gaps = 32/719 (4%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
            R       +S + A +EL+ L + I+YHD  Y+    P I D++YD L  R +A+  +F
Sbjct: 2   TRDHPDPSKMSADDAAQELAYLAERIAYHDRKYHGEDAPDISDADYDMLVARNNALEASF 61

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P+L R   P+ P  ++G  ++ S  K+ H+ P LSL   ++ ED+  F+TRI +F    +
Sbjct: 62  PELIR---PDSPSQRVGTMVSGSFGKIRHAQPMLSLSNGFSAEDIADFVTRIRKFLSLAE 118

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
            + I FT EPKIDG  +++RYEKG  V AA RGDG  GEDV+A IR +  IP+ L   +P
Sbjct: 119 TDDIAFTAEPKIDGLSLSLRYEKGHLVQAATRGDGSEGEDVTANIRTVDAIPKTLPDTVP 178

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVH 241
           +I EVRGEVY+ + DFLALN +    G K +ANPRNAA+G LR+ + +   +R L FF +
Sbjct: 179 DIFEVRGEVYMDRKDFLALNADQERKGGKIFANPRNAAAGSLRQKDVSITGSRNLAFFAY 238

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
            +G+ S   A    + L  +R  GF VN+  R   +   +++ Y+ + S R++L YDIDG
Sbjct: 239 SMGEASAPVAATHTDFLAALRDFGFSVNDLSRHCLSLDDMLATYDAIGSQRASLDYDIDG 298

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKVD    Q++LG+ AR+PRW ++HKF  +QA T ++ IDIQ+GRTG LTPVARL PV
Sbjct: 299 VVYKVDRHDYQERLGQVARAPRWALAHKFPAEQAETTIIKIDIQVGRTGALTPVARLTPV 358

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG +++NATLHNED I             +DIR+GD V+++RAG+VIP+VV ++  +R
Sbjct: 359 TVGGVVVSNATLHNEDEIAR-----------KDIRIGDHVIIQRAGDVIPQVVRVLDEKR 407

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             D Q F+FP  CP+C S  +R          A  RCTGGLAC AQ +E+LKHFVSRDAF
Sbjct: 408 PDDVQIFTFPDRCPVCDSDAIRPEGE------AVRRCTGGLACEAQLVEQLKHFVSRDAF 461

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IEGLG +Q++ F +       ++ PADIF L+ R+     K+  + G+G  S+ NL+ S
Sbjct: 462 DIEGLGARQIEQFLE----LGWVKTPADIFRLETRRD----KLATLDGYGAKSLDNLFAS 513

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI--NNIIAHNNDDWLSLI 599
           IN RR I LERFI++LGIR VG   +R LA +Y         +   N  + +     +L+
Sbjct: 514 INARRTIGLERFIYALGIRQVGQATSRLLALHYGDLDMMMSALDPENTESEHEIAIAALV 573

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +  +GD +A  I  F+ +  +   V  L  E+S        +  S +  K +VFTGTL 
Sbjct: 574 DIDQIGDAMAADICRFFGDTAHRNIVNDLASELSILPPERP-SEDSAVSGKTVVFTGTLA 632

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++ R +A+     LGA VS  +S KTD +I G + GSK  KA +LGV +++E+++  L+
Sbjct: 633 RMSRAEAKAKAEALGAKVSGSVSAKTDYLIAGADAGSKARKAAELGVTVLSEDEWRALI 691


>gi|258621988|ref|ZP_05717017.1| DNA ligase [Vibrio mimicus VM573]
 gi|258585741|gb|EEW10461.1| DNA ligase [Vibrio mimicus VM573]
          Length = 670

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 243/712 (34%), Positives = 382/712 (53%), Gaps = 48/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L  L Q +  H   YY    P I D+EYD L R    +  A P+L     P+ 
Sbjct: 1   MSNVEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG        V H IP LSL+  ++  +L  F  R+             F  EPK
Sbjct: 58  PSLRVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRI--PAVQQSHFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L  +   + +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPVRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIIDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKVDDIR 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  DA+P  F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAKPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS + R          A  RCTGGL C AQ+ E LKHFVSR A +++GLG + 
Sbjct: 405 PACCPVCQSEIERIEGE------AVARCTGGLICQAQRKEALKHFVSRKAMDVDGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+        ++  +   G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA+++L+    AQ               LI VP VG ++A 
Sbjct: 509 PRFLYALGIREVGEATALNLAQHFLTLDAIAQA----------SMDQLIEVPDVGGVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+   RN   +  L++           +     S +  K +V TG+  ++ R+ A+
Sbjct: 559 HLHAFFAQSRNQQVIAELIELGITWPAMAVASSIAADSALAGKVVVLTGSFTQLSRNDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++++E+  +  L+
Sbjct: 619 AALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQVLDEQALIDFLK 670


>gi|213156587|ref|YP_002318248.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB0057]
 gi|215484469|ref|YP_002326704.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB307-0294]
 gi|301347734|ref|ZP_07228475.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB056]
 gi|301512482|ref|ZP_07237719.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB058]
 gi|301594386|ref|ZP_07239394.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB059]
 gi|221222446|sp|A3M2U3|DNLJ_ACIBT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254778154|sp|B7GZ71|DNLJ_ACIB3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254778155|sp|B7I790|DNLJ_ACIB5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781253|sp|B0V8E4|DNLJ_ACIBY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193076578|gb|ABO11237.2| DNA ligase [Acinetobacter baumannii ATCC 17978]
 gi|213055747|gb|ACJ40649.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB0057]
 gi|213986610|gb|ACJ56909.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB307-0294]
          Length = 678

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 253/720 (35%), Positives = 380/720 (52%), Gaps = 47/720 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L ++   
Sbjct: 1   MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E
Sbjct: 58  DSPTTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL     EI   +EVR
Sbjct: 115 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P         F+ +G+ +  
Sbjct: 175 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 234

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 235 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+
Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 403

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 404 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   +       ++  ADI+ L   ++     +  I   G+ SV NL D+I   +
Sbjct: 458 GDRWVESLLR----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +               +  +L + P VGD
Sbjct: 510 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------NVEALKKTPDVGD 559

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L+                 +  +  V TGTL+++ R +A
Sbjct: 560 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL 
Sbjct: 619 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTLS 678


>gi|169797009|ref|YP_001714802.1| DNA ligase [Acinetobacter baumannii AYE]
 gi|169149936|emb|CAM87830.1| DNA ligase [Acinetobacter baumannii AYE]
          Length = 691

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 253/720 (35%), Positives = 380/720 (52%), Gaps = 47/720 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L ++   
Sbjct: 14  MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQA--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E
Sbjct: 71  DSPTTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVE 127

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL     EI   +EVR
Sbjct: 128 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 187

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P         F+ +G+ +  
Sbjct: 188 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 247

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 248 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 307

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 367

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+
Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 416

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 417 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 470

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   +       ++  ADI+ L   ++     +  I   G+ SV NL D+I   +
Sbjct: 471 GDRWVESLLR----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 522

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +               +  +L + P VGD
Sbjct: 523 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------NVEALKKTPDVGD 572

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L+                 +  +  V TGTL+++ R +A
Sbjct: 573 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 631

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL 
Sbjct: 632 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTLS 691


>gi|29375318|ref|NP_814472.1| DNA ligase, NAD-dependent [Enterococcus faecalis V583]
 gi|227554838|ref|ZP_03984885.1| DNA ligase, NAD-dependent [Enterococcus faecalis HH22]
 gi|256761492|ref|ZP_05502072.1| NAD-dependent DNA ligase [Enterococcus faecalis T3]
 gi|257415292|ref|ZP_05592286.1| NAD-dependent DNA ligase [Enterococcus faecalis AR01/DG]
 gi|257418334|ref|ZP_05595328.1| NAD-dependent DNA ligase [Enterococcus faecalis T11]
 gi|81437298|sp|Q837V6|DNLJ_ENTFA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|29342778|gb|AAO80542.1| DNA ligase, NAD-dependent [Enterococcus faecalis V583]
 gi|227176007|gb|EEI56979.1| DNA ligase, NAD-dependent [Enterococcus faecalis HH22]
 gi|256682743|gb|EEU22438.1| NAD-dependent DNA ligase [Enterococcus faecalis T3]
 gi|257157120|gb|EEU87080.1| NAD-dependent DNA ligase [Enterococcus faecalis ARO1/DG]
 gi|257160162|gb|EEU90122.1| NAD-dependent DNA ligase [Enterococcus faecalis T11]
 gi|315031451|gb|EFT43383.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0017]
 gi|315166929|gb|EFU10946.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1341]
 gi|315575350|gb|EFU87541.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0309B]
 gi|315581380|gb|EFU93571.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0309A]
          Length = 676

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 240/714 (33%), Positives = 383/714 (53%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL     P
Sbjct: 6   LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + +  E
Sbjct: 63  DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+  I   +EVRGE 
Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+      R LN F++ +     + 
Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+EF+
Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  ++ 
Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+  
Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG + 
Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L   +        ++  AD++ L   Q  +      +    + S  N+Y +I   +  S+
Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ IA 
Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V +++N      +  L K                 V S  ++K +V TG L +  R +
Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLAQYTREE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672


>gi|261211985|ref|ZP_05926271.1| DNA ligase [Vibrio sp. RC341]
 gi|260838593|gb|EEX65244.1| DNA ligase [Vibrio sp. RC341]
          Length = 670

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 243/712 (34%), Positives = 379/712 (53%), Gaps = 48/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L+ L Q +  H   YY    P I D+EYD L R    I    P+      P+ 
Sbjct: 1   MSNVEQRLTELRQTLHEHGIRYYVEDAPTIPDAEYDRLMRELLDIEAQHPEWI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG        V H IP LSL+  ++  +L  F  R+             F  EPK
Sbjct: 58  PSLRVGGRPLDGFDSVIHEIPMLSLDNAFDDAELESFYRRMTDRI--PAVQQSHFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPRRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF- 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFDALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIIEGGML 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   +  +Y ++   R  L Y+IDG+V KVD+ +
Sbjct: 236 ASSHYQRFLQLKSWGLPICPETKLVASLSEVKDFYQDILQRRGALAYEIDGVVIKVDDIT 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  DA+   F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPVDAKTILF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS + R          A  RCTGGL C AQ+ E LKHFVSR A ++EGLG + 
Sbjct: 405 PTHCPVCQSDIERIEGE------AVARCTGGLVCQAQRKEALKHFVSRKALDVEGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+        ++  +   G  S  N+ D+++K +  +L
Sbjct: 459 IEQLVDRE----MVATPADLFRLRA------GELTILERMGPKSAQNVIDALHKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+++LGIR VG   A +LA+++L+ +  AQ               LI V  VG+++A 
Sbjct: 509 PKFLYALGIREVGEATALNLAQHFLTLEAIAQAT----------MEQLIEVSDVGNVVAG 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+   RN   +  L++                 S +  K +V TG+  ++ R+ A+
Sbjct: 559 HLHAFFAQSRNQKVIAELIELGVTWPAMAAISSTEADSVLAGKVVVLTGSFNQLSRNDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  LGA V+  +S+ TDI+  G+  GSKL KA +LGV +M+E+  + LL+
Sbjct: 619 AALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGVAVMDEQALIELLK 670


>gi|258514074|ref|YP_003190296.1| DNA ligase, NAD-dependent [Desulfotomaculum acetoxidans DSM 771]
 gi|257777779|gb|ACV61673.1| DNA ligase, NAD-dependent [Desulfotomaculum acetoxidans DSM 771]
          Length = 677

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 252/708 (35%), Positives = 395/708 (55%), Gaps = 47/708 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + +++A K +  L +EI  H+  YY    P+I D+EYD L     A+   FPDL      
Sbjct: 1   MELKEAGKRVLELRREIEEHNYNYYVMDNPVIGDAEYDRLMLELTALEQQFPDLL---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+       VTH +P LSL   ++ ++L+ F  R+           + + +E
Sbjct: 58  HSPTQRVGGKPKEGFTTVTHRVPMLSLANSFSEQELKDFDRRVRGAL---AGEEVNYVVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE G F   A RGDG +GED++  ++ I ++   L   +P ++EVRGEV
Sbjct: 115 LKIDGLAVSLFYENGLFQRGATRGDGETGEDITENLKTIRSLSLQLKEAVP-VLEVRGEV 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250
           Y+S   F  LN    A  +  +ANPRNAA+G LR+L+P   + R L+ F++ +G    + 
Sbjct: 174 YMSGEAFRRLNKSREAEDQPLFANPRNAAAGSLRQLDPRITSSRQLSAFIYAVGYYEGVS 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             G  E L+ ++ LGFPV+   R+      +++Y  + ++ R  LP+ IDGLV KVD   
Sbjct: 234 LSGHEEALRYLQDLGFPVSRYYRKFADIEEVLAYCRDWEARRFELPFAIDGLVIKVDSLE 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  A+SPRW I++KF  +QA T++ DI I +GRTG+LTP A L+PV + G+ ++ 
Sbjct: 294 QQLKLGATAKSPRWSIAYKFPPEQAVTKVKDIIINVGRTGVLTPTALLDPVRLAGSTVSR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED IK            +D+++GD V+V++AGE+IP+VV ++  +R     PF  
Sbjct: 354 ATLHNEDIIK-----------EKDVQIGDTVVVQKAGEIIPEVVRVLSEKRSGGEIPFKM 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P +CP C ++VVR          AA RCTG  AC +Q  E L HFVSR A +I GLG   
Sbjct: 403 PQYCPDCGAKVVRLEGE------AASRCTGM-ACPSQLREGLIHFVSRGAMDIAGLGPAV 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +     +      I   AD++ L+     +      +  FG  SV NL  ++ + +  SL
Sbjct: 456 ITQLLDT----GLIHDAADLYNLRYEDLVN------LERFGQKSVQNLLQALEQSKKASL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R IF+LGIRHVG   A++LA+++ S QN                  L+ +P +G  IA 
Sbjct: 506 GRLIFALGIRHVGERAAKTLARHFGSLQNLMAA----------GLEELVGIPEIGTKIAG 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +I+ F++  +N+  V+ L++     + +  E + +  +E K  V TGTL+   R  A+++
Sbjct: 556 SIITFFEQEQNLSVVDKLVRAGVNIVEKDTEASTAGSLEGKTFVLTGTLRSFTRETAKQF 615

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  LG  V+A +S+ TD ++ G+NPGSK +KA +LG+K+++E  F  L
Sbjct: 616 IEGLGGKVTASVSKSTDYVLAGENPGSKYDKAVKLGIKVIDEAYFKEL 663


>gi|262172020|ref|ZP_06039698.1| DNA ligase [Vibrio mimicus MB-451]
 gi|261893096|gb|EEY39082.1| DNA ligase [Vibrio mimicus MB-451]
          Length = 670

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 243/712 (34%), Positives = 382/712 (53%), Gaps = 48/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L  L Q +  H   YY    P I D+EYD L R    +  A P+L     P+ 
Sbjct: 1   MSNVEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG        V H IP LSL+  ++  +L  F  R+             F  EPK
Sbjct: 58  PSLRVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRI--PAVQQSHFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L  +   + +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPVRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIIDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  DA+P  F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAKPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS + R          A  RCTGGL C AQ+ E LKHFVSR A +++GLG + 
Sbjct: 405 PACCPVCQSEIERIEGE------AVARCTGGLICQAQRKEALKHFVSRKAMDVDGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+        ++  +   G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA+++L+    AQ               LI VP VG ++A 
Sbjct: 509 PRFLYALGIREVGEATALNLAQHFLTLDAIAQA----------SMDQLIEVPDVGGVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+   RN   +  L++           +     S +  K +V TG+  ++ R+ A+
Sbjct: 559 HLHAFFAQSRNQQVIAELIELGITWPAMAVASSIAADSALAGKVVVLTGSFTQLSRNDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++++E+  +  L+
Sbjct: 619 AALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQVLDEQALIDFLK 670


>gi|304312656|ref|YP_003812254.1| DNA ligase, NAD-dependent [gamma proteobacterium HdN1]
 gi|301798389|emb|CBL46613.1| DNA ligase, NAD-dependent [gamma proteobacterium HdN1]
          Length = 677

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 253/717 (35%), Positives = 392/717 (54%), Gaps = 48/717 (6%)

Query: 12  LSIEQA--RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           ++   A  R+E  +L  ++  H+  YY    P + DSEYD L +R  A+  A PDL    
Sbjct: 1   MNHSSASDREEAQALRAQLQEHNYRYYVLDDPSVPDSEYDRLFQRLLALEQAHPDLITQ- 59

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++G     +  +V H +P LSL+ ++N  +L  F  RI+     K +  + F 
Sbjct: 60  --DSPTQRVGAAPLAAFKQVQHRVPMLSLDNVFNAAELLAFEKRIHDRL--KSEVPVDFV 115

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188
            EPK+DG  +++ Y  G FV  A RGDG +GED++  +R + T+P  L     P  +EVR
Sbjct: 116 CEPKLDGLAVSLLYRDGLFVQGATRGDGETGEDITQNLRTLSTVPLRLMGEGFPSELEVR 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+ K     LN    + G K +ANPRNAA+G LR+L+P     R L  + +G+G  +
Sbjct: 176 GEVYMPKAGLAELNQRQTSAGDKTFANPRNAAAGSLRQLDPRITAKRPLELYCYGIGHVA 235

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                     +L  +   GF VN  +R A        YY+ + + R  L YDIDG+VYKV
Sbjct: 236 GGTLPARHSAILAALGKWGFRVNPEIRSAANAAECQRYYDALLARRDALAYDIDGVVYKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           DE +LQ++LG  +R+PRW I+HKF  ++  TRLLD++ Q+GRTG +TPVARLEPV +GG 
Sbjct: 296 DELALQQRLGFVSRAPRWAIAHKFPAQEEITRLLDVEFQVGRTGAVTPVARLEPVYVGGV 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN D +  L           DI VGD V+V RAG+VIP++V ++   R P A 
Sbjct: 356 TVSNATLHNMDEVARL-----------DIHVGDTVVVLRAGDVIPRIVRVLPERRPPYAP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P+ CP+C S + R+         A  RC+GGL C AQ  E +KHF +R A +I+GL
Sbjct: 405 VVMLPAACPVCGSAITREEGE------AVARCSGGLFCPAQTKEAIKHFSARRAMDIDGL 458

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D    +      +   AD+++       ++  +  +   G+ S   L  +I K R
Sbjct: 459 GDKIVDQLVDT----GLVASVADLYS------LASASLAALERMGEKSADKLVAAIAKSR 508

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           N + +RF+F+LGIR VG   A++LA++Y +     +           D  SL+ VP +G 
Sbjct: 509 NTTFQRFLFALGIREVGEATAQTLARHYETLDALLRA----------DEASLLEVPDIGP 558

Query: 607 IIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           + A+ IV+F+  P N   ++ LL  E+           +  + ++ LV TG+L ++ R +
Sbjct: 559 VSARNIVQFFAQPHNREVLDRLLAAEIHWPAPVKADVSALPLSDQTLVLTGSLSQLSRDE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A +++  LGA VS  +S+ T  +  G+  GSKL +A+ LG+ +  E++ + LL+++ 
Sbjct: 619 AGDHLRALGAKVSGSVSKNTTAVYAGEKAGSKLARAESLGIPVYTEDELMSLLREHG 675


>gi|50084060|ref|YP_045570.1| DNA ligase [Acinetobacter sp. ADP1]
 gi|81393600|sp|Q6FDW0|DNLJ_ACIAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|49530036|emb|CAG67748.1| DNA ligase [Acinetobacter sp. ADP1]
          Length = 676

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 252/717 (35%), Positives = 378/717 (52%), Gaps = 47/717 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +       ++  L Q I+ H+  YY   +P I D+EYD L  +  A+   +P+L +++  
Sbjct: 2   MQPADIVAQMRQLIQLIAKHNHAYYVMDQPSITDNEYDQLFHQLKALEAEYPELTQADT- 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P N++GG+       VTH++P LSL  ++N EDL  F  RI        +  I + +E
Sbjct: 61  --PTNRVGGQALSKFETVTHAVPMLSLGNVFNQEDLFAFARRIEERL---PNQQIQYDVE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE---IIEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+ L  +  E    +EVR
Sbjct: 116 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKHLQHHSVETPRFLEVR 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLG-KT 246
           GEV + K  F  LN    A G K +ANPRNAA+G LR+L+P         F+ +G+    
Sbjct: 176 GEVLMPKQGFERLNAANEAKGEKTFANPRNAAAGSLRQLDPAIAASRPLAFYAYGIAQCE 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   +E LQ +  LGF +       ++   +   Y +++  R  L  +IDG+V KV
Sbjct: 236 PHHGLGSMHESLQWLTQLGFEIAERQFLCSSIQEVQQCYEQIQQERPDLAVEIDGMVIKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T + +ID Q+GRTG LTPVARL+PV +GG 
Sbjct: 296 DDLKQQQQLGFLSREPRWATAYKFPAEVAMTTVENIDWQVGRTGTLTPVARLQPVFVGGV 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+RVGDRV V R+G+VIPKV  +    R   A+
Sbjct: 356 TVSNVTLHNIGEIHRL-----------DVRVGDRVSVYRSGDVIPKVEKVWPEFRPELAE 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 405 IVQLPEQCPVCSSPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGL 458

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++           ++  ADI+ L   ++    ++  I   G+ SV NL D+I   +
Sbjct: 459 GDRWVESLLH----LDLLKDVADIYHLHEHRE----QLLTIEKMGEKSVQNLMDAIEASK 510

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + +     Q           D  +L + P VGD
Sbjct: 511 KTTLARFIYALGIRGVGETTARMLANTFQTLDALKQA----------DIEALKKTPDVGD 560

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+    NI  ++ LL                 +  +  V TGTL+ + R +A
Sbjct: 561 ITAEWIYDFFLAEHNIEVLDRLLAAG-IHWDAPLAPTRQPLNGESWVVTGTLETMGRDEA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            + +  LGA VS  +S KT  ++ G+  GSKL+KA++L +++MNE++FL  L QY+ 
Sbjct: 620 TQRLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAEKLQIRVMNEQEFLAFLAQYSA 676


>gi|256957407|ref|ZP_05561578.1| NAD-dependent DNA ligase [Enterococcus faecalis DS5]
 gi|257077597|ref|ZP_05571958.1| NAD-dependent DNA ligase [Enterococcus faecalis JH1]
 gi|294779927|ref|ZP_06745308.1| DNA ligase (NAD(+)) [Enterococcus faecalis PC1.1]
 gi|256947903|gb|EEU64535.1| NAD-dependent DNA ligase [Enterococcus faecalis DS5]
 gi|256985627|gb|EEU72929.1| NAD-dependent DNA ligase [Enterococcus faecalis JH1]
 gi|294452976|gb|EFG21397.1| DNA ligase (NAD(+)) [Enterococcus faecalis PC1.1]
 gi|295114065|emb|CBL32702.1| DNA ligase, NAD-dependent [Enterococcus sp. 7L76]
 gi|315036101|gb|EFT48033.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0027]
 gi|315172192|gb|EFU16209.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1346]
          Length = 676

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 240/714 (33%), Positives = 383/714 (53%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL     P
Sbjct: 6   LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + +  E
Sbjct: 63  DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+  I   +EVRGE 
Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+      R LN F++ +     + 
Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+EF+
Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  ++ 
Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+  
Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG + 
Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L   +        ++  AD++ L   Q  +      +    + S  N+Y +I   +  S+
Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ IA 
Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V +++N      +  L K                 V S  ++K +V TG L +  R +
Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMVDALD 672


>gi|307269776|ref|ZP_07551106.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4248]
 gi|306513886|gb|EFM82488.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4248]
          Length = 676

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 240/714 (33%), Positives = 382/714 (53%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL     P
Sbjct: 6   LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + +  E
Sbjct: 63  DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+  I   +EVRGE 
Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+      R LN F++ +     + 
Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+EF+
Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G   + 
Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTGSR 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+  
Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG + 
Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L   +        ++  AD++ L   Q  +      +    + S  N+Y +I   +  S+
Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ IA 
Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V +++N      +  L K                 V S  ++K +V TG L +  R +
Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMVDALD 672


>gi|114767408|ref|ZP_01446210.1| DNA ligase, NAD-dependent [Pelagibaca bermudensis HTCC2601]
 gi|114540493|gb|EAU43572.1| DNA ligase, NAD-dependent [Roseovarius sp. HTCC2601]
          Length = 757

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 302/759 (39%), Positives = 445/759 (58%), Gaps = 59/759 (7%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
             I +EALS +QAR EL  L   ++  +  Y+    P I D++YDALKRR  AI   FP+
Sbjct: 11  GEIDVEALSEDQARAELERLAGLLAQANLAYHTEDAPEISDADYDALKRRNVAIEERFPE 70

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L R    + P  ++G  +     K+ H+   +SL   ++ +++R F   I R+    +D 
Sbjct: 71  LKRE---DSPSEQVGAALAEGFGKIRHAQRMMSLSNAFDDDEVRDFDRGIRRYLGLAEDA 127

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + FT EPKIDG  +++RYE G  + AA RGDG +GE+V+A  R I  IP+ L    PE+
Sbjct: 128 PLPFTAEPKIDGLSLSLRYENGALIQAATRGDGATGENVTANARTIDDIPQQLEGA-PEL 186

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +EVRGEVY+S  DF ALN+   A G KP+ANPRNAA+G LR+L+P     R L FF +  
Sbjct: 187 LEVRGEVYMSHADFEALNERQEARGGKPFANPRNAAAGSLRQLDPEITRARPLKFFAYAW 246

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G+ S   A+ Q + ++++  LGF  N   R  +    ++ +Y +++  R+TL YDIDG+V
Sbjct: 247 GELSAPLAETQMDAIERLAQLGFQTNPLTRLCDGPQEMLDHYAQIEEQRATLGYDIDGVV 306

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKV++ +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +
Sbjct: 307 YKVNDLALQARLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTV 366

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG +++NATLHNEDYI G DASG  +R G+DIRVGD V V RAG+VIPK+ D+ +++R  
Sbjct: 367 GGVVVSNATLHNEDYIAGRDASGNPIRDGKDIRVGDWVQVYRAGDVIPKIADVDLSKRPD 426

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            A+P++FP  CP C S  +R+         A  RC+GGL C AQ +E++KHFVSR AF+I
Sbjct: 427 GAEPYAFPETCPECGSEAIREEG------DAVRRCSGGLICPAQAVEKMKHFVSRSAFDI 480

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG +Q++ F++       I  PA+IFTL+ R  +   +++N  G+G+ S  NL+D+I+
Sbjct: 481 EGLGAKQVEQFYRD----GWISEPAEIFTLRERYGSGLQQLKNREGWGEKSANNLFDAID 536

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN----------- 592
           ++R I L R +FSLGIRHVG  +A  LA++YLS+      I+                  
Sbjct: 537 EKRKIELGRVLFSLGIRHVGEVVANDLARHYLSWSAMIAAIDAARPAAERYRRAEQAVEA 596

Query: 593 ---------------------------------DDWLSLIRVPLVGDIIAQAIVEFYQNP 619
                                              W  L+ V  +G  +A ++V     P
Sbjct: 597 ERVAAKSEGRRARLKEIRDAAWAEDPAVSTEARAAWDDLVGVDGIGQTVAVSLVTSMGQP 656

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
               +++ L+ ++            S +  K +VFTG+L+K+ R +A+     LGA VS 
Sbjct: 657 TERASIDRLVAQLDIQDAERPATDGSPVAGKTVVFTGSLEKMTRAEAKARAEALGAKVSG 716

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +S+KTDI++ G   GSK  KA++LGV++M+E+ +L L+
Sbjct: 717 SVSKKTDIVVAGPGAGSKEAKARELGVELMDEDAWLALI 755


>gi|218710253|ref|YP_002417874.1| NAD-dependent DNA ligase LigA [Vibrio splendidus LGP32]
 gi|254782307|sp|B7VIK3|DNLJ_VIBSL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218323272|emb|CAV19449.1| DNA ligase [Vibrio splendidus LGP32]
          Length = 670

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 248/710 (34%), Positives = 382/710 (53%), Gaps = 47/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E  +  L  L + + YH   YY    P I D EYD L ++   I    P+L      + 
Sbjct: 2   KESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEDENPELVTV---DS 58

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG+      +VTH IP LSL+  ++ +DL  F  R+       +     F  EPK
Sbjct: 59  PSQRVGGQPLDGFTQVTHEIPMLSLDNAFSDDDLDAFNKRMSDRAPTANLE--TFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ Y  G  V AA RGDG +GE+++  +R I +IP  L     PE IEVRGEV+
Sbjct: 117 LDGLAVSLLYVNGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IF 250
           + K  F  LN+  +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 177 MPKAGFDKLNEMALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVQGAEL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           +   Y+   +++  G P+    +Q ++   + +YY ++ + R TL Y+IDG+V KVD+ +
Sbjct: 237 SNSHYQRFLQLKAWGLPMCPETKQLSSLEDVKAYYQDIMTRRDTLAYEIDGVVIKVDDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEP+ +GG  ++N
Sbjct: 297 AQETLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            ++VGD V+++RAG+VIP++V ++ + R   A+   F
Sbjct: 357 ATLHNADEIARL-----------GVKVGDSVIIRRAGDVIPQIVAVVQDRRPETAKDIVF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++GLG + 
Sbjct: 406 PDACPVCNSAVERVEGE------AVARCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKV 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L      S   I  +   G  S  N+  ++NK ++ +L
Sbjct: 460 IEQLVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVSALNKAKDTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF++SLGIR VG   A +LA+++ + +      +            L+ V  +GDI+A 
Sbjct: 510 ARFLYSLGIREVGEATAMNLAQHFKTLELVQAATH----------EQLVEVSDIGDIVAS 559

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   +N   V+ L++                  +E K +V TG+L K+ R +A+ 
Sbjct: 560 HLTSFFSQEKNRAVVDQLIELGVNWPAIEAVADDQELPLEGKVVVLTGSLSKLGRSEAKA 619

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +  LGA V+  +S+KTDI+  G+  GSKL KAQ LG++I  EE  + L+
Sbjct: 620 ALQALGAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIRTEEDLIALI 669


>gi|84393803|ref|ZP_00992550.1| DNA ligase [Vibrio splendidus 12B01]
 gi|84375600|gb|EAP92500.1| DNA ligase [Vibrio splendidus 12B01]
          Length = 670

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 252/710 (35%), Positives = 385/710 (54%), Gaps = 47/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E  +  L  L + + YH   YY    P I D EYD L ++   I    P+L      + 
Sbjct: 2   KESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEEENPELVTV---DS 58

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG+      +VTH IP LSL+  ++ EDL  F  R+       +     F  EPK
Sbjct: 59  PSQRVGGQPLDGFTQVTHEIPMLSLDNAFSDEDLDAFNKRMSDRAPMANLK--TFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ Y  G  V AA RGDG +GE+++  +R I +IP  L     PE IEVRGEV+
Sbjct: 117 LDGLAVSLLYVNGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IF 250
           + K  F  LN+  +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 177 MPKAGFDKLNEMALKKGDKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVQGAEL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           +   Y+   +++  G P+    +Q ++   + +YY ++ + R  L Y+IDG+V KVD+ +
Sbjct: 237 SNSHYQRFLQLKGWGLPMCPETKQLSSLEDVKAYYQDIMTRRDALAYEIDGVVIKVDDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q  LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEP+ +GG  ++N
Sbjct: 297 AQVTLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            ++VGD V+++RAG+VIP++V ++++ R   A+   F
Sbjct: 357 ATLHNADEIARL-----------GVKVGDSVIIRRAGDVIPQIVAVVLDRRPETARDIVF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++GLG + 
Sbjct: 406 PDACPVCNSAVERVEGE------AVARCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKV 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L      S   I  +   G  S  N+  ++NK ++ +L
Sbjct: 460 IEQLVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVSALNKAKDTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF++SLGIR VG   A +LA+++ + +      +            L+ V  +GDI+A 
Sbjct: 510 ARFLYSLGIREVGEATAMNLAQHFKTLELVQAATH----------EQLVEVSDIGDIVAS 559

Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   +N   VE LL+     P+I     +    +E K +V TG+L K+ R +A+ 
Sbjct: 560 HLTSFFSQEKNRAVVEQLLELGVNWPTIEAVADDQELPLEGKVVVLTGSLSKLGRSEAKA 619

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +  LGA V+  +S+KTDI+  G+  GSKL KAQ LG++I  EE  + L+
Sbjct: 620 ALQALGAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIRTEEDLIALI 669


>gi|148269959|ref|YP_001244419.1| DNA ligase, NAD-dependent [Thermotoga petrophila RKU-1]
 gi|170288644|ref|YP_001738882.1| DNA ligase, NAD-dependent [Thermotoga sp. RQ2]
 gi|190359298|sp|A5IKX0|DNLJ_THEP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781442|sp|B1LA51|DNLJ_THESQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147735503|gb|ABQ46843.1| DNA ligase, NAD-dependent [Thermotoga petrophila RKU-1]
 gi|170176147|gb|ACB09199.1| DNA ligase, NAD-dependent [Thermotoga sp. RQ2]
          Length = 688

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 247/721 (34%), Positives = 385/721 (53%), Gaps = 54/721 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +R++        ++  +E+  L +EI YH+  YY  + P+I D EYD L RR   +  
Sbjct: 1   MSERKIP-------KEVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDKLMRRLIELER 53

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            +P+L     P+ P  ++GG++      V HS+P LSL+  +N E++ +F  R+ +  Q+
Sbjct: 54  MYPELV---TPDSPTQRVGGKVLEGFKTVKHSVPMLSLDNTYNEEEILEFDRRVKKTLQE 110

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                + +  E KIDG  I +RYE GKFV  A RGDG  GEDVS  ++ + +IP  L   
Sbjct: 111 A---EVEYVAELKIDGVSIALRYENGKFVLGATRGDGIEGEDVSENVKTVRSIPLRLRKP 167

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +   +EVRGE+Y+  ++F  LNDE    G  P+ANPRNAA+G LR+LN      R L+ F
Sbjct: 168 V--TVEVRGEIYMPVDEFKRLNDEREEEGLPPFANPRNAAAGTLRQLNTALVAARRLDSF 225

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ +        K Q+E LQ ++ LGF VN   +       ++ Y+ E +  +  L Y +
Sbjct: 226 IYYVVHPENYGLKTQWEALQFLKELGFKVNPHSKLCKNIQEVIDYWREWEERKKELDYWV 285

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV+ F  Q+ LGE +++PRW I+ KF  +QA TR+LD+ IQ+GRTG+LTPVA LE
Sbjct: 286 DGVVVKVNRFDFQRILGETSKAPRWAIAFKFPAEQARTRVLDVTIQVGRTGVLTPVAELE 345

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G ++  A+LHN +YI+            +DIR+GD V V++AG +IP++V  I  
Sbjct: 346 PVQLAGTIVKRASLHNFEYIR-----------EKDIRIGDYVFVEKAGGIIPQIVKSIPE 394

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R    +    P  CP+C  +V +    +         C        +    L+  VSR+
Sbjct: 395 LRTGSEKEIKPPDKCPVCGGKVGKLDPEEVALRCLNPHCPA------KLKRALRTLVSRE 448

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG++ +D        A  ++  ADIF L           +   G G  ++  + 
Sbjct: 449 ALDIEGLGEKLIDRLVD----AGLVKDIADIFYLTPFDL-----AQLGPGIGQRTIAKIL 499

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
             I + +   L + I  LGI  VG + A+ LA+++ S +  A             + +L 
Sbjct: 500 QEIEEAKKRPLHKLITGLGIPMVGQKTAKILAEHFKSLEAIADA----------SYETLK 549

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +P +G  IA++IVE+++NP+    +E L K     +      +   ++      TGTL+
Sbjct: 550 DIPGIGPEIAKSIVEYFRNPKTREIIEKLKKAGV-KLEERVMKLD-ILKGLTFAVTGTLK 607

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R +  E+  +LGA V   +SR TD +IVG+NPGSK EKA+ L VK M+EE+FL  ++
Sbjct: 608 NFTREEIVEFFEKLGAKVVNSVSRNTDYLIVGENPGSKYEKAKMLKVKTMSEEEFLEFVR 667

Query: 720 Q 720
           +
Sbjct: 668 K 668


>gi|254480787|ref|ZP_05094034.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2148]
 gi|214039370|gb|EEB80030.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2148]
          Length = 677

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 239/715 (33%), Positives = 374/715 (52%), Gaps = 45/715 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++    + E+  L  ++   +  YY    P + D+EYD   R+       FP+L      
Sbjct: 1   MTDSATQAEVLQLRTQLREWNYRYYVLDDPSVPDAEYDRYLRQLQGFEEQFPELV---TE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G +      +VTH +P LSL+  ++  +L  F  R+     + D  +I ++ E
Sbjct: 58  DSPTQRVGSKPLSQFSQVTHEVPMLSLDNAFDATELVDFERRLRDRLGEPDL-AIEYSCE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  +++ Y  G     A RGDG +GED++  +R IP+IP  L  +  P+I+EVRGE
Sbjct: 117 PKLDGIAVSLLYRDGILERGATRGDGTTGEDITQNVRTIPSIPLQLRGDGYPQILEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249
           +Y+    F  LN   +  G K + NPRNAA+G LR+L+      R L    + +G     
Sbjct: 177 IYMPLAGFDQLNRRALEKGEKVFVNPRNAAAGSLRQLDSRITAQRPLEMCCYSVGLVQGG 236

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                   +L  +   G  +N   +          YY  +   R +LPYDIDG+VYKV+ 
Sbjct: 237 QLPPEHAAVLDCLHRWGLRINAESQVVTGVQACEQYYESLAKRRDSLPYDIDGIVYKVNR 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q +LG  +R+PRW I+ KF  ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  +
Sbjct: 297 LDQQSRLGFVSRAPRWAIARKFPAQEEMTQLLDVEFQVGRTGAITPVARLEPVFVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            +RVGD V+V+RAG+VIPKVV +++++R  D++  
Sbjct: 357 SNATLHNADEIERL-----------GLRVGDFVVVRRAGDVIPKVVSVVLDKRPGDSRAV 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FPS CP+C S   R+ +       A  RC GGL C+AQQ   +KHF SR A +I+GLG 
Sbjct: 406 EFPSHCPVCNSATEREPDE------AVIRCMGGLVCAAQQKAAIKHFASRRAMDIDGLG- 458

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
              D   +       +   A +++L + Q  +      +   G+ S  NL  ++   ++ 
Sbjct: 459 ---DKLVEQMVDEGLLENVASLYSLHKDQLMA------LERMGEKSADNLLAALAASKDT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL RFIF+LGIR VG   A +LA+++ S+                   SL+ V  VG ++
Sbjct: 510 SLPRFIFALGIREVGEATALNLARHFGSWPELVAASE----------ESLLDVDDVGPVV 559

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQ 667
           A  + +F+ +   +   EAL +             S   +  +  V TG L+ + R++A+
Sbjct: 560 ADHLRQFFDSTSGMAVAEALREAGVRWPDIEIAAESVLPLAGQTWVVTGKLELMGRNEAK 619

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             +  LGA V+  +S KT  ++ G   GSKL KAQ LGV++++E  F+ LL+Q+ 
Sbjct: 620 AALQTLGAKVAGSVSAKTHCVVAGPGAGSKLAKAQDLGVEVIDEITFVALLEQHG 674


>gi|256617609|ref|ZP_05474455.1| NAD-dependent DNA ligase [Enterococcus faecalis ATCC 4200]
 gi|257089149|ref|ZP_05583510.1| NAD-dependent DNA ligase [Enterococcus faecalis CH188]
 gi|312904259|ref|ZP_07763421.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0635]
 gi|256597136|gb|EEU16312.1| NAD-dependent DNA ligase [Enterococcus faecalis ATCC 4200]
 gi|256997961|gb|EEU84481.1| NAD-dependent DNA ligase [Enterococcus faecalis CH188]
 gi|310632355|gb|EFQ15638.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0635]
 gi|315578805|gb|EFU90996.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0630]
          Length = 676

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 240/714 (33%), Positives = 383/714 (53%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL     P
Sbjct: 6   LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + +  E
Sbjct: 63  DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+  I   +EVRGE 
Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+      R LN F++ +     + 
Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+EF+
Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  ++ 
Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+  
Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG + 
Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L   +        ++  AD++ L   Q  +      +    + S  N+Y +I   +  S+
Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ IA 
Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLSTLSRAT----------AEEIVALDSIGETIAD 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V +++N      +  L K                 V S  ++K +V TG L +  R +
Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMVDALD 672


>gi|238063192|ref|ZP_04607901.1| DNA ligase, NAD-dependent [Micromonospora sp. ATCC 39149]
 gi|237885003|gb|EEP73831.1| DNA ligase, NAD-dependent [Micromonospora sp. ATCC 39149]
          Length = 702

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 231/717 (32%), Positives = 357/717 (49%), Gaps = 43/717 (5%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR+  ++L QE++ H   YY    P + D+E+D   R  +A+   FP L     P+ P 
Sbjct: 16  EARERHATLSQELTEHQYRYYVLDAPTVSDAEFDRQLRELEALEAEFPAL---RTPDSPT 72

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            +IGG  +     VTH+   LSL+  +  E+L  +  R+ R         + +  E K+D
Sbjct: 73  QRIGGTFSTDFTPVTHAERMLSLDNAFADEELAAWAERVER----DAGGPVPYLCELKVD 128

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT-----IPRVLSLNIPEIIEVRGE 190
           G  I + YEKG+ V AA RGDG +GEDV+A +R+I        P     ++PE +EVRGE
Sbjct: 129 GLAINLTYEKGRLVRAATRGDGRTGEDVTANVRSIRDVPARLTPSDEFPDVPEFVEVRGE 188

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           +Y     F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L   VHG+G     
Sbjct: 189 IYFPIAGFADLNASLVEQGKAPFANPRNAAAGSLRQKDPRITASRPLRLVVHGIGARRGY 248

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q E    +R  G P ++  R      G+  +       R  + ++IDG+V KVD  
Sbjct: 249 TPTAQSESYAALRAWGLPTSDRWRVVPDLAGVAEFIAYYAEHRHDVEHEIDGVVVKVDPV 308

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           S+Q +LG  +R+PRW I+ K+  ++ +T+LLDID+ +GRTG +TP A LEPV + G+ + 
Sbjct: 309 SIQGRLGSTSRAPRWAIAFKYPPEEVNTKLLDIDVNVGRTGRVTPFAILEPVLVAGSTVA 368

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   ++            + + +GD V++++AG+VIP+V+  +V+ R  DA+PF 
Sbjct: 369 LATLHNAHEVER-----------KGVLIGDTVVIRKAGDVIPEVLGPVVDLRPADARPFV 417

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +  +      +     RC    +C AQ  ER+ H   R AF+IE LG +
Sbjct: 418 MPTTCPACGTPLRPE-----KEADVDIRCPNSRSCPAQLRERVFHLAGRGAFDIEVLGYK 472

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                  ++     I    D+F+L   +   +    N  G    +   L D++   R   
Sbjct: 473 GAAALLDAQ----VITDEGDLFSLDAERLAQSPFFVNKDGSLGSNAAKLLDNLAVARERD 528

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R +  L IRHVG   A++LA+++ S     +               L  V  VG  IA
Sbjct: 529 LWRVLVGLSIRHVGPTAAQALARHFRSMAAIQEASE----------EELSSVDGVGPTIA 578

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            +IV+++    +   V    +                +E   +V TGTL    R +A E 
Sbjct: 579 ASIVDWFTVDWHREVVRKWAEAGVRMAEEAGDEGPRPLEGLTVVVTGTLSGFSRDQAAEA 638

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           +   G  V+  +S+KT  ++VGDNPGSK +KA  L V +++EE F  LL Q     R
Sbjct: 639 IQTRGGKVTGSVSKKTGFVVVGDNPGSKADKAATLKVPVLDEEGFRVLLDQGPDAAR 695


>gi|229548668|ref|ZP_04437393.1| DNA ligase, NAD-dependent [Enterococcus faecalis ATCC 29200]
 gi|257420983|ref|ZP_05597973.1| DNA ligase [Enterococcus faecalis X98]
 gi|312953107|ref|ZP_07771956.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0102]
 gi|229306184|gb|EEN72180.1| DNA ligase, NAD-dependent [Enterococcus faecalis ATCC 29200]
 gi|257162807|gb|EEU92767.1| DNA ligase [Enterococcus faecalis X98]
 gi|310628941|gb|EFQ12224.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0102]
 gi|315153982|gb|EFT97998.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0031]
 gi|315156746|gb|EFU00763.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0043]
          Length = 676

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 240/714 (33%), Positives = 382/714 (53%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL     P
Sbjct: 6   LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + +  E
Sbjct: 63  DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+  I   +EVRGE 
Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+      R LN F++ +     + 
Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+EF+
Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  ++ 
Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+  
Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG + 
Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L   +        ++  AD++ L   Q  +      +    + S  N+Y +I   +  S+
Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ IA 
Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAN 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V +++N      +  L K                 V S  ++K +V TG L +  R +
Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE+  +  L 
Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQAMVDALD 672


>gi|254460861|ref|ZP_05074277.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium HTCC2083]
 gi|206677450|gb|EDZ41937.1| DNA ligase, NAD-dependent [Rhodobacteraceae bacterium HTCC2083]
          Length = 706

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 298/715 (41%), Positives = 443/715 (61%), Gaps = 14/715 (1%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
             I  LS+E+AR EL++L + ++  +  Y+    P + D+ YDALK+R  AI   FP L 
Sbjct: 4   TDITELSVEEARAELAALSKALNTANVAYHGKDNPDLSDANYDALKQRNAAIEDHFPTLV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R    + P   +G  +     K+TH+   +SL   +  ED+  F   I ++    +D  +
Sbjct: 64  RE---DSPSKLVGAPVQDGFGKITHAQRMMSLGNAFTDEDVADFTQGIRKYLGLSNDRPL 120

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  +++RYE G  + AA RGDG +GEDV A    I  +P+ L  N PE+IE
Sbjct: 121 AFTAEPKIDGLSLSLRYENGTLIQAATRGDGTTGEDVLANALTIADVPKNL-ENAPEVIE 179

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY++  DF ALN   +  G K +ANPRNAA+G LR+L+     +R L FF +  G 
Sbjct: 180 VRGEVYMTHADFDALNARQVERGSKTFANPRNAAAGSLRQLDSEITKSRPLRFFAYAWGV 239

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S+  A  Q+  + +++ LGF  N   ++      ++ +Y +++  R+ L YDIDG+VYK
Sbjct: 240 LSDPLANTQHGAIARLKMLGFQTNPLTQRFENVVDLIKHYQQIEQQRAALGYDIDGVVYK 299

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ + Q +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG
Sbjct: 300 VDDLAYQSRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLSPVTVGG 359

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYI+G D SG+++RGGRDIRVGD V + RAG+VIPK+ D+ +++R  D+
Sbjct: 360 VVVSNATLHNEDYIEGRDNSGELIRGGRDIRVGDWVQIYRAGDVIPKIKDVDLSKRPSDS 419

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            PF FP  CP CQS  +RD+        A  RC+GGL C AQ +E++KHFVSR AF+IEG
Sbjct: 420 SPFEFPKICPECQSAALRDVG------DAVRRCSGGLICPAQAVEKMKHFVSRGAFDIEG 473

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F+   DP   IR PADIFTL+ R     +K++N  G+G  S   L+ +I++R
Sbjct: 474 LGAKQVEMFYH--DPTLPIREPADIFTLKTRDAQQLSKLKNRDGWGAKSADKLFAAIDER 531

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           RNIS  R +++LG+RHVGA+ A  +A++Y S+  F   ++       D W  L+ +  VG
Sbjct: 532 RNISFARVLYALGLRHVGAQSASLIARHYGSWAVFVDAMDAASDQVGDAWDRLMSIDGVG 591

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+A ++V  +  P    ++  +  E++        +  S +  K +VF+GTL+K+ R +
Sbjct: 592 EIMASSLVTAFIQPGERASITRVTDELTIIDAEKP-DTDSPVTGKVVVFSGTLEKMTRAE 650

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+     LGA VS  +S KTDI+I G   GSK +KA +L ++ ++E+ +L L++ 
Sbjct: 651 AKARAEALGAKVSGSVSAKTDILIAGPGAGSKAKKAAELDIETLDEDSWLALIED 705


>gi|260555699|ref|ZP_05827919.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ATCC 19606]
 gi|260410610|gb|EEX03908.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ATCC 19606]
          Length = 691

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 254/720 (35%), Positives = 380/720 (52%), Gaps = 47/720 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L ++   
Sbjct: 14  MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQA--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E
Sbjct: 71  DSPTMKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVE 127

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188
            K+DG  I+I YE G  V    RGDG +GED++  ++ I  +P+VL     EI   +EVR
Sbjct: 128 LKLDGLAISIWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 187

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P         F+ +G+ +  
Sbjct: 188 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 247

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 248 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 307

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 367

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+
Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 416

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 417 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 470

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   +       ++  ADI+ L   ++     +  I   G+ SV NL D+I   +
Sbjct: 471 GDRWVESLLR----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 522

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +               +  +L + P VGD
Sbjct: 523 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------NVEALKKTPDVGD 572

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L+                 +  +  V TGTL+++ R +A
Sbjct: 573 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 631

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL 
Sbjct: 632 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTLS 691


>gi|307289585|ref|ZP_07569529.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0109]
 gi|306499399|gb|EFM68772.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0109]
 gi|315164584|gb|EFU08601.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1302]
          Length = 676

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 240/714 (33%), Positives = 384/714 (53%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL     P
Sbjct: 6   LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     K  H IP  SL   ++ ED+  F  R+++   K     + +  E
Sbjct: 63  DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVHKAIGK----PVAYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+  I   +EVRGE 
Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+      R LN F++ +     + 
Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+EF+
Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  ++ 
Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+  
Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG + 
Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L   +        ++  AD++ L   Q  +      +    + S  N+Y +I   +  S+
Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ IA 
Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLSTLSRAT----------AEEIVALDSIGETIAD 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V +++N      +  L K                 V S  ++K +V TG L +  R +
Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMVDALD 672


>gi|254781232|sp|B0VU02|DNLJ_ACIBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 678

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 252/720 (35%), Positives = 379/720 (52%), Gaps = 47/720 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+  ++   
Sbjct: 1   MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEFVQA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E
Sbjct: 58  DSPTTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL     EI   +EVR
Sbjct: 115 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P         F+ +G+ +  
Sbjct: 175 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 234

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 235 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+
Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 403

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 404 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   +       ++  ADI+ L   ++     +  I   G+ SV NL D+I   +
Sbjct: 458 GDRWVESLLR----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +               +  +L + P VGD
Sbjct: 510 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------NVEALKKTPDVGD 559

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L+                 +  +  V TGTL+++ R +A
Sbjct: 560 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL 
Sbjct: 619 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTLS 678


>gi|169634132|ref|YP_001707868.1| DNA ligase [Acinetobacter baumannii SDF]
 gi|169152924|emb|CAP01965.1| DNA ligase [Acinetobacter baumannii]
          Length = 691

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 252/720 (35%), Positives = 379/720 (52%), Gaps = 47/720 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+  ++   
Sbjct: 14  MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEFVQA--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E
Sbjct: 71  DSPTTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVE 127

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL     EI   +EVR
Sbjct: 128 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 187

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P         F+ +G+ +  
Sbjct: 188 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 247

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 248 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 307

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 367

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+
Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 416

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 417 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 470

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   +       ++  ADI+ L   ++     +  I   G+ SV NL D+I   +
Sbjct: 471 GDRWVESLLR----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 522

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +               +  +L + P VGD
Sbjct: 523 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------NVEALKKTPDVGD 572

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L+                 +  +  V TGTL+++ R +A
Sbjct: 573 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 631

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL 
Sbjct: 632 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTLS 691


>gi|86148411|ref|ZP_01066703.1| DNA ligase [Vibrio sp. MED222]
 gi|85833825|gb|EAQ51991.1| DNA ligase [Vibrio sp. MED222]
          Length = 670

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 248/710 (34%), Positives = 383/710 (53%), Gaps = 47/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E  +  L  L + + YH   YY    P I D EYD L ++   +    P+L      + 
Sbjct: 2   KESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKLEEENPELVTV---DS 58

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG+      +VTH IP LSL+  ++ +DL  F  R+       +     F  EPK
Sbjct: 59  PSQRVGGQPLDGFTQVTHEIPMLSLDNAFSDDDLDAFNKRMSDRAPTANLK--TFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ Y KG  V AA RGDG +GE+++  +R I +IP  L     PE IEVRGEV+
Sbjct: 117 LDGLAVSLLYVKGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IF 250
           + K  F  LN+  +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 177 MPKAGFDKLNEMALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVQGAEL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           +   Y+   +++  G P+    +Q ++   + +YY ++ + R TL Y+IDG+V KVD+ +
Sbjct: 237 SNSHYQRFLQLKAWGLPMCPETKQLSSLEDVKAYYQDIMTRRDTLAYEIDGVVIKVDDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEP+ +GG  ++N
Sbjct: 297 AQETLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            ++VGD V+++RAG+VIP++V ++ + R   A+   F
Sbjct: 357 ATLHNADEIARL-----------GVKVGDSVIIRRAGDVIPQIVAVVQDRRPETAKDIVF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++GLG + 
Sbjct: 406 PDACPVCNSAVERVEGE------AVARCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKV 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L      S   I  +   G  S  N+  ++NK ++ +L
Sbjct: 460 IEQLVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVSALNKAKDTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF++SLGIR VG   A +LA+++ + +      +            L+ V  +GDI+A 
Sbjct: 510 ARFLYSLGIREVGEATAMNLAQHFKTLELVQAATH----------EQLVEVSDIGDIVAS 559

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQE 668
            +  F+   +N   V+ L++                  +E K +V TG+L K+ R +A+ 
Sbjct: 560 HLTSFFSQEKNRAVVDQLIELGVNWPAIEAVADDQELPLEGKVVVLTGSLSKLGRSEAKA 619

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +  LGA V+  +S+KTDI+  G+  GSKL KAQ LG++I  EE  + L+
Sbjct: 620 ALQALGAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIRTEEDLIALI 669


>gi|217970592|ref|YP_002355826.1| DNA ligase, NAD-dependent [Thauera sp. MZ1T]
 gi|217507919|gb|ACK54930.1| DNA ligase, NAD-dependent [Thauera sp. MZ1T]
          Length = 693

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 263/703 (37%), Positives = 380/703 (54%), Gaps = 49/703 (6%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90
           HD  YY    P I D+EYD L R   AI  A+P L      + P  ++GG+       V 
Sbjct: 30  HDHAYYVLDAPTIPDAEYDRLFRELQAIERAYPAL---RSADSPTQRVGGKALAQFATVR 86

Query: 91  HSIPTLSLEKIWNIED--LRKFITRIYRFWQK-KDDNSIFFTLEPKIDGTMITIRYEKGK 147
           H +P LS+    + E      F  R+ R     +DD ++ +  E K DG  I++RYE G 
Sbjct: 87  HRVPMLSISTETDTEASGAFAFDARVRRALGLDEDDAAVAYAAELKFDGLAISLRYEDGV 146

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V AA RGDG +GEDV++ +R +  IP  L    P ++EVRGE+Y+ ++DF  LN     
Sbjct: 147 LVQAATRGDGETGEDVTSNVRTVKAIPLRLLGEAPPVLEVRGEIYLRRDDFERLNARQAE 206

Query: 208 VGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKT-SEIFAKGQYEMLQKMRCLG 265
            G K + NPRNAA+G +R+L+P    R   +F+ +GLG+         Q E+L  +   G
Sbjct: 207 AGEKIFVNPRNAAAGSIRQLDPGIAARRPLSFYAYGLGEVAGWTLPATQTEVLDALAAFG 266

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
            PV     Q     G+ +++  + ++R TLP+DIDG+VYKVD  +LQ+QLG   R PRW 
Sbjct: 267 LPVCGHRAQVRGAEGLAAFHARIGALRDTLPFDIDGVVYKVDALALQQQLGFVTREPRWA 326

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           ++HK+  ++A T L DI++Q+GRTG LTPVARLEPV +GG  +TNATLHN+D I      
Sbjct: 327 VAHKYPAQEAVTLLRDIEVQVGRTGALTPVARLEPVFVGGVTVTNATLHNQDEIDR---- 382

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS---FPSFCPICQSRVV 442
                  +D+R+GD V+V+RAG+VIP+VV  I+  R  +   F        CP+C S VV
Sbjct: 383 -------KDVRIGDWVIVRRAGDVIPEVVAPILERRGGELPRFVLLDRFPTCPVCGSHVV 435

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
           R  +       A  RCTGGL C AQ+ + L HF  R A +IEGLG + +D        A 
Sbjct: 436 RGEDE------AVARCTGGLFCPAQRKQALLHFAGRRAMDIEGLGDKLVDQLVD----AA 485

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            ++ P D++ L          + N+   G+ S  NL  +I K R  +L RFIF+LGIR+V
Sbjct: 486 IVKTPVDLYRL------GVLALANLERMGEKSAQNLLMAIEKSRGTTLARFIFALGIRNV 539

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G   AR LA+++                   D  +L +VP VG I+A+ I EF+  P N 
Sbjct: 540 GEATARDLARHFGKLDALIAA----------DVDALQQVPDVGPIVAKCIAEFFAEPHNR 589

Query: 623 CAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
             +E L       + G  + +V+  +  K  V TGTL  + R +A+  +   G  V+  +
Sbjct: 590 EVIEQLRAAGVHWAEGEPQGSVAGALAGKTFVLTGTLPTLSRDEAKARIEARGGKVAGSV 649

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           S+KT  ++ G   GSKL+KAQ LG+ I++E+    LL + +T 
Sbjct: 650 SKKTHYVVAGAEAGSKLDKAQALGLAILDEDGLRVLLNETDTN 692


>gi|281412160|ref|YP_003346239.1| DNA ligase, NAD-dependent [Thermotoga naphthophila RKU-10]
 gi|281373263|gb|ADA66825.1| DNA ligase, NAD-dependent [Thermotoga naphthophila RKU-10]
          Length = 688

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 248/721 (34%), Positives = 385/721 (53%), Gaps = 54/721 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +R++        ++  +E+  L +EI YH+  YY  + P+I D EYD L RR   +  
Sbjct: 1   MSERKIP-------KEVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDKLMRRLIELER 53

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            +P+L     P+ P  ++GG++      V HS+P LSL+  +N E++ +F  R+ +  Q+
Sbjct: 54  MYPELV---TPDSPTQRVGGKVLEGFKTVKHSVPMLSLDNTYNEEEILEFDRRVKKTLQE 110

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                + +  E KIDG  I +RYE GKFV  A RGDG  GEDVS  ++ + +IP  L   
Sbjct: 111 A---EVEYVAELKIDGVSIALRYENGKFVLGATRGDGIEGEDVSENVKTVRSIPLRLRKL 167

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +   +EVRGE+Y+  ++F  LNDE    G  P+ANPRNAA+G LR+LN      R L+ F
Sbjct: 168 V--TVEVRGEIYMPVDEFKRLNDEREEEGLPPFANPRNAAAGTLRQLNTALVAARRLDSF 225

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ +        K Q+E LQ ++ LGF VN   +       ++ Y+ E K  +  L Y +
Sbjct: 226 IYYVVHPENYGLKTQWEALQFLKELGFKVNPHSKLCKNIQEVIDYWREWKERKKELDYWV 285

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV+ F  Q+ LGE +++PRW I+ KF  +QA TR+LD+ IQ+GRTG+LTPVA LE
Sbjct: 286 DGVVVKVNRFDFQRILGETSKAPRWAIAFKFPAEQARTRVLDVTIQVGRTGVLTPVAELE 345

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G ++  A+LHN +YI+            +DIR+GD V V++AG +IP++V  I  
Sbjct: 346 PVQLAGTIVKRASLHNFEYIR-----------EKDIRIGDYVFVEKAGGIIPQIVKSIPE 394

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R    +    P  CP+C  +V +    +         C        +    L+  VSR+
Sbjct: 395 LRTGSEKEIKPPDKCPVCGGKVGKLDPEEVALRCLNPHCPA------KLKRALRTLVSRE 448

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG++ +D        A  ++  ADIF L           +   G G  ++  + 
Sbjct: 449 ALDIEGLGEKLIDRLVD----AGLVKDIADIFYLTPFDL-----AQLGPGIGQRTIAKIL 499

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
             I + +   L + I  LGI  VG + A+ LA+++ S +  A             + +L 
Sbjct: 500 QEIEEAKKRPLHKLITGLGIPMVGQKTAKILAEHFKSLEAIADA----------SYETLK 549

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +P +G  IA++IVE+++NP+    +E L K     +      +   ++      TGTL+
Sbjct: 550 DIPGIGPEIAKSIVEYFRNPKTREIIEKLKKAGV-KLEERVMKLD-ILKGLTFAVTGTLK 607

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R +  E+  +LGA V   +SR TD +IVG+NPGSK EKA+ L VK M+EE+FL  ++
Sbjct: 608 NFTREEIVEFFEKLGAKVVNSVSRNTDYLIVGENPGSKYEKAKMLKVKTMSEEEFLEFVR 667

Query: 720 Q 720
           +
Sbjct: 668 K 668


>gi|254514186|ref|ZP_05126247.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3]
 gi|219676429|gb|EED32794.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3]
          Length = 675

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 242/712 (33%), Positives = 376/712 (52%), Gaps = 46/712 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +  + +L +++   +  YY   +P + D +YDA  R    +    P+L   +DP+ P 
Sbjct: 6   DIKARVVALREQLERWNHQYYVLDEPTVPDQDYDAALRELQKLETEHPEL---QDPSSPT 62

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G     +   V H +P LSL+  ++ E+L  F+ R+      +    +    EPK+D
Sbjct: 63  QRVGAAPLSAFESVAHPMPMLSLDNAFSDEELGAFLQRVMDRLDVESLPEL--VAEPKLD 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194
           G  +++ Y  G    AA RGDG  GED++  +R I ++P  L  +  P+++E+RGE+++ 
Sbjct: 121 GIAVSLIYRDGVLARAATRGDGTHGEDITLNVRTIGSVPLRLGGDACPDVVEIRGEIFMP 180

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLG-KTSEIFAK 252
           +  F A N+     G KP+ NPRNAA+G LR+L+      R L F  +  G      + K
Sbjct: 181 RAGFEAFNEYARRNGEKPFVNPRNAAAGSLRQLDSQITARRPLEFCAYASGQHPESQWPK 240

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +E+LQ     G P++    + ++    V YY  +   R +L +DIDG+VYKV++F  Q
Sbjct: 241 SHWEVLQLFASWGVPISRYAERLSSLEECVDYYQRLGDQRDSLSFDIDGIVYKVNDFEAQ 300

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  AR+PRW I+ KF  ++A T++  ++ Q+GRTG +TPVARLEPV +GG  ++NAT
Sbjct: 301 SKLGFVARAPRWSIARKFPAQEAVTKVTGVEFQVGRTGAITPVARLEPVFVGGVTVSNAT 360

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D +  L+           +  GD V+V+RAG+VIP+VV +I   R PDA   + PS
Sbjct: 361 LHNMDEVGRLE-----------LHDGDTVVVRRAGDVIPQVVSVIEERRLPDAALIAAPS 409

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S V R          A  RC+GGL C AQ    ++HF SR A +I+GLG++   
Sbjct: 410 ACPVCASAVQRVAGE------ATLRCSGGLVCPAQLKAAVRHFASRRAMDIDGLGEK--- 460

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +       +R  AD+F L++R       +  +   G+ S T L  +I   R  +L R
Sbjct: 461 -LVEQMVDTGLVRDVADLFRLEQR------SLLTLERMGEKSATKLLAAIESSRRTTLAR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A +LA Y+ S +               D  SL+ VP VG ++AQ +
Sbjct: 514 FIFALGIREVGEATALALATYFGSIEAIRAA----------DLDSLLEVPDVGPVVAQHL 563

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             F+    N   +E LL            +N    +E +  V +G L+   R +A+E + 
Sbjct: 564 RAFFSAQANQQVLERLLAAGVVWPAVSPAQNAQGPLEGQTWVVSGKLESQSRDEAEEALR 623

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            LGA  S  +S KT +++ G   GSKL KA+ LGV+I++E++FL  L +   
Sbjct: 624 ALGARTSKSVSGKTSVLLAGPGAGSKLAKAESLGVEIVDEQEFLARLAKAGA 675


>gi|229546559|ref|ZP_04435284.1| NAD-dependent DNA ligase [Enterococcus faecalis TX1322]
 gi|256854411|ref|ZP_05559775.1| DNA ligase [Enterococcus faecalis T8]
 gi|307274689|ref|ZP_07555861.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2134]
 gi|307296388|ref|ZP_07576212.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0411]
 gi|229308304|gb|EEN74291.1| NAD-dependent DNA ligase [Enterococcus faecalis TX1322]
 gi|256709971|gb|EEU25015.1| DNA ligase [Enterococcus faecalis T8]
 gi|306496043|gb|EFM65628.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0411]
 gi|306508618|gb|EFM77716.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2134]
 gi|315029103|gb|EFT41035.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4000]
 gi|315157732|gb|EFU01749.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0312]
 gi|323479918|gb|ADX79357.1| DNA ligase, NAD-dependent [Enterococcus faecalis 62]
          Length = 676

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 240/714 (33%), Positives = 382/714 (53%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL     P
Sbjct: 6   LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + +  E
Sbjct: 63  DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+  I   +EVRGE 
Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+      R LN F++ +     + 
Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+EF 
Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFV 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG   ++PRW I++KF  ++A T + DI+  IGRTG++TP A + PV + G  ++ 
Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSR 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+  
Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG + 
Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L   +        ++  AD++ L   Q  +      +    + S  N+Y +I   +  S+
Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ IA 
Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V +++N      +  L K                 V S  ++K +V TG L +  R +
Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMVDALD 672


>gi|260576789|ref|ZP_05844774.1| DNA ligase, NAD-dependent [Rhodobacter sp. SW2]
 gi|259021041|gb|EEW24352.1| DNA ligase, NAD-dependent [Rhodobacter sp. SW2]
          Length = 705

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 302/713 (42%), Positives = 431/713 (60%), Gaps = 18/713 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            IE L+  +A  E   L + ++  +  Y+Q   P + D+ YDA+KRR  AI   FP LA 
Sbjct: 6   AIEQLTEAEAAVEWQELARAVAQANIDYHQNDAPKLTDATYDAMKRRLAAIEVLFPQLAT 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
               + P +K+G        KV H++  LSLE  ++  D+  F  R+ +F        + 
Sbjct: 66  ----DSPTSKVGAAPADGFAKVPHAVRMLSLENAFDDTDVTDFDDRVRKFLGHAA--PLT 119

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           +T EPKIDG  +++RYE G  V AA RGDG  GE+V+   R I  IP+ L+   P ++EV
Sbjct: 120 YTAEPKIDGLSLSLRYEAGVLVQAATRGDGEVGENVTDNARTISDIPQSLTGA-PAVLEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+S  DF ALN    A G K +ANPRNAA+G LR+L+ +    R L FF +  G  
Sbjct: 179 RGEVYMSHADFAALNSRQAARGEKTFANPRNAAAGSLRQLDASITAARPLRFFAYAWGAL 238

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE  A  Q E + ++  LGF  N   R   +   +++ Y E+++ R++L YDIDG+VYKV
Sbjct: 239 SEPLAATQLEAIARLAALGFATNPLTRACTSPDDLLAVYREIEAQRASLGYDIDGVVYKV 298

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ +LG RA +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG 
Sbjct: 299 NDLALQARLGFRAATPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGV 358

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++ NATLHNEDYI G D+ G  +R G+DIR+GD V V RAG+VIPK+ +I + +R    +
Sbjct: 359 VVANATLHNEDYIAGRDSKGNPIRDGKDIRIGDWVQVYRAGDVIPKINNIDLEKRPKTVE 418

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F+FP+ CP C S  +R+         +  RCTGGL C AQ +ERLKHFVSR AF+IEGL
Sbjct: 419 TFTFPTICPQCGSDAIREDG------DSVRRCTGGLICPAQAVERLKHFVSRAAFDIEGL 472

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSINKR 545
           G +Q++ FF   DP   ++ PADIFTL  R   S   K++N  G+G+ S TNL+ +I+++
Sbjct: 473 GAKQIEAFFN--DPDLPLKTPADIFTLASRDAASPLKKLKNRDGWGEKSATNLFAAIDEK 530

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R+I L R IF+LGIRHVG   A  LA +Y S+ NF   + +       DW  L  +  VG
Sbjct: 531 RSIPLHRLIFALGIRHVGESSAALLANHYGSWSNFEAAMTHAEIGQGADWADLTAIDGVG 590

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            ++A +++  +  P    A++AL+  ++           S +  K LVFTGTL+K+ R +
Sbjct: 591 AVLATSLITTFHQPAERAAIDALVAHLTVQDAA-PVATDSPVAGKTLVFTGTLEKMSRAE 649

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+     LGA V+  +S KTD++I G   GSK + A+ LGV++++E  +L L+
Sbjct: 650 AKARAESLGAKVAGSVSAKTDLVIAGPGAGSKAKAAEALGVQVIDEAAWLALI 702


>gi|257784913|ref|YP_003180130.1| DNA ligase, NAD-dependent [Atopobium parvulum DSM 20469]
 gi|257473420|gb|ACV51539.1| DNA ligase, NAD-dependent [Atopobium parvulum DSM 20469]
          Length = 705

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 229/735 (31%), Positives = 364/735 (49%), Gaps = 60/735 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + ALS ++     + L + +++    YY    P + D+E+D L      +  A+P+L   
Sbjct: 1   MAALSPKE-TARAAELNRILNHAAYAYYALDNPELTDAEFDRLLIELQQLEAAYPELI-- 57

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +    ++GG ++     V H+    S++   N+E+L  +++R          N + +
Sbjct: 58  -TEDSYTQRVGGYVSEQFEPVQHAARMYSMDDAMNLEELDAWLSRTDEALGASPTNPVAY 116

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---- 184
           T E KIDG  + + Y  G+FV AA RGDG +GE+V+A +  I  +PR L+L   E     
Sbjct: 117 TCELKIDGLGVALTYRDGQFVRAATRGDGSTGENVTANVLTISDVPRELALAGLERVENR 176

Query: 185 -----IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
                IEVRGEVY+ K+ F+ LN++  A G++P+ANPRNAA+G LR+ +P     R L  
Sbjct: 177 GLNQSIEVRGEVYMPKHSFIRLNEDADAAGKQPFANPRNAAAGSLRQKDPKITAHRDLET 236

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F++ +     +    Q+E L  +R  GF VN   R+      +  +  +    R  L YD
Sbjct: 237 FIYAVADEGPLDVHSQWEFLNWLRSCGFNVNPHARRCLNAQEVHDFCAQALEQRGDLNYD 296

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KVD F+ Q+ LG  +R+PRW I+ KF  ++  T L +I IQ+GRTG+LTPVA  
Sbjct: 297 IDGVVVKVDSFASQEALGFTSRAPRWAIAFKFPPEEKQTVLREIRIQVGRTGVLTPVAEF 356

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV + G+ I  ATLHN D I+            +++R GD ++V +AG+VIP+VV  ++
Sbjct: 357 DPVTVAGSTIARATLHNLDEIRR-----------KNVREGDTIIVHKAGDVIPEVVGPVL 405

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           N R  DA  F  P+ CP C S V+++          A RC   + C AQ +ERL H+ SR
Sbjct: 406 NLRPADAVEFQMPATCPSCGSPVIQEEGE------VAFRCVS-IDCPAQAVERLIHWGSR 458

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV--- 535
            A +I+GLG    D           +   AD +     +  +      +           
Sbjct: 459 KAMDIDGLG----DELINRMVEEGVLSDVADFYDKLTEEMLACMPTGRVYDTDTADHLSG 514

Query: 536 ----------TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
                       +   + + +   L R +F +G+RHVGA +A  LA+ + S Q  A    
Sbjct: 515 DSIPVGHTIAKKVMAKVEESKTRGLGRVLFGIGMRHVGANVAELLAQEFGSIQALATAP- 573

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-S 644
                       +  +P +G  IA+++ EF+  P N+  +E L +          +N   
Sbjct: 574 ---------VEKIAEIPGIGPKIAESVHEFFSIPENVAVIERLRQAGVVLEEEKTENELP 624

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +     V TGTL+   R +A   +  +GA VS  +S+KT  ++ G+  GSKL KA+ L
Sbjct: 625 QTLAGLTFVLTGTLEHFTRDEAGAQLKAMGAKVSGSVSKKTSFVVAGEAAGSKLTKAESL 684

Query: 705 GVKIMNEEQFLFLLQ 719
           GV +++E     +L+
Sbjct: 685 GVPVLDETALQQILE 699


>gi|330466191|ref|YP_004403934.1| DNA ligase [Verrucosispora maris AB-18-032]
 gi|328809162|gb|AEB43334.1| DNA ligase, NAD-dependent [Verrucosispora maris AB-18-032]
          Length = 717

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 228/710 (32%), Positives = 354/710 (49%), Gaps = 43/710 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           QAR+  ++L QE++ H   YY    P + D+E+D   R   A+   FP L     P+ P 
Sbjct: 31  QARERHATLSQELTEHQYRYYVLDAPTVSDAEFDRQLRELTALEEEFPAL---RTPDSPT 87

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG  +     V H+   +SL+  +  E+L  +  R+ R         + +  E K+D
Sbjct: 88  QRVGGTFSTDFTPVAHAERMMSLDNAFADEELAAWAERVER----DAGGPVPYLCELKVD 143

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-----LSLNIPEIIEVRGE 190
           G  I + Y+ G+ + AA RGDG +GEDV+A +R+I  +P           +PE IEVRGE
Sbjct: 144 GLAINLTYQGGRLIRAATRGDGRTGEDVTANVRSIRDVPSRLTDSAEYGPVPEFIEVRGE 203

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           +Y     F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L   VHG+G     
Sbjct: 204 IYFPVEAFADLNAGLVEQGKAPFANPRNAAAGSLRQKDPRITASRPLRLVVHGIGARKGF 263

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q E    ++  G P ++  R      G+  Y     + R  + ++IDG+V KVD  
Sbjct: 264 QPSTQSESYSALKAWGLPTSDRWRVLPDLTGVRDYIAHYAAHRHDVEHEIDGVVVKVDPV 323

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            +Q +LG  +R+PRW I+ K+  ++ +T+LLDI++++GRTG +TP A LEPV + G+ + 
Sbjct: 324 PIQGRLGSTSRAPRWAIAFKYPPEEVNTKLLDIEVEVGRTGRVTPRALLEPVKVAGSTVA 383

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   ++            + + +GD V++++AG+VIP+V+  +V+ R PDA+PF 
Sbjct: 384 YATLHNAREVER-----------KGVLIGDTVVIRKAGDVIPEVLGPVVDLRPPDARPFV 432

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +         +     RC    +C AQ  ER+ H   R AF+IE LG +
Sbjct: 433 MPTTCPACGTPLA-----PAKEGDVDIRCPNSRSCPAQLRERVFHLAGRGAFDIEALGYK 487

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                  ++     I    D+F+L   Q   +    N  G    + T L D++   R   
Sbjct: 488 SGAALLDAQ----IITDEGDLFSLDAEQLARSPFFVNKDGSLGSNATKLLDNLAVARERD 543

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L IRHVG   A++LA+++ S +                   L  V  VG  IA
Sbjct: 544 LWRVLVALSIRHVGPTAAQALARHFRSIEAIDNASE----------EELSSVDGVGPTIA 593

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            +I E++    +   V    +                +E   +V TGTL    R +A E 
Sbjct: 594 ASIREWFAVDWHREVVRKWAEAGVRMAEEAVAEGPRPLEGLTVVVTGTLSGYSRDQAAEA 653

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +   G  VS  +S+KT  ++VGDNPGSK +KA  L V I++EE F  LL 
Sbjct: 654 IQSRGGKVSGSVSKKTGFVVVGDNPGSKADKAATLKVPILDEEGFQVLLD 703


>gi|159028322|emb|CAO87220.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 669

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 220/706 (31%), Positives = 361/706 (51%), Gaps = 45/706 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++    L+ E+      YY    P I DS YD L R  + I   +P L     P+ P 
Sbjct: 6   EIQQRCQQLKTELQRASYAYYVLDDPFISDSVYDQLYRELEDIEKRYPQLI---TPDSPT 62

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +++     V H+IP  SLE  +N+E+L K+ +R  R+  +  D    +  E KID
Sbjct: 63  QRVGDKISSQFVSVRHNIPLYSLENAFNLEELNKWGSRWQRYVNETQD--TEYVCELKID 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYIS 194
           G+ + + YE G  V    RGDG +GED++  +R I +IP      N P I+EVRGE ++ 
Sbjct: 121 GSALALTYENGFLVRGVTRGDGVTGEDITPNVRTIRSIPLRLNIDNPPAIVEVRGEAFLP 180

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
            + F  +N E    G   +ANPRNAA+G LR+L+P  + +    F        +     Q
Sbjct: 181 LDTFDKINQEREEKGESLFANPRNAAAGTLRQLDPKIVDKRRLQFFAYTLHLDDNHITTQ 240

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           ++ L ++  +GF VN   +   +   +  YY + +  R  L Y  DG+V K+++   Q +
Sbjct: 241 WQSLDRLETMGFLVNPHRQLCPSLQEVAQYYQDWQEKRHQLAYMTDGVVVKINDLQRQNR 300

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   + PRW I+ K+  ++  T + DI + +GRTG +TP+A +EPV + G  +  ATLH
Sbjct: 301 LGFTQKFPRWAIALKYPAEEVPTVVKDIIVNVGRTGAVTPMAVMEPVQVAGTTVQRATLH 360

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D +  L           DIRVGD V++++AGE+IP+VV I+   R     PF  P+ C
Sbjct: 361 NSDRVAEL-----------DIRVGDTVIIRKAGEIIPEVVRILPELRPSQTLPFQMPTNC 409

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P CQS +VR +        A  RC    +C A     + H+ SRDA +I GLG++ +   
Sbjct: 410 PECQSPLVRPVGE------AVTRCVNS-SCPAILRGSVVHWASRDALDIRGLGEKVVILL 462

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +       +   +D+++L++      T+I  +   G+ S  NL  ++ + +N S  R +
Sbjct: 463 IEQ----GLVTAISDLYSLEK------TEIAKLDRMGEKSALNLITAMAQSKNQSWSRVL 512

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           + LGIR+VG+  A+ LA+ + + +  A                L  V  +G+ IAQ++ +
Sbjct: 513 YGLGIRYVGSVNAKILAESFRTVEELANA----------SVTDLASVYGIGEEIAQSVYD 562

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +++   N   V  L           +   +   +  K  V TGTL  ++R +A+E + + 
Sbjct: 563 WFRIAANRDLVAKLQAAGLQFAAAAKTTTTKATLAGKTFVITGTLPTLKREEAKELIEKA 622

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G  V+  +S+KTD +++G+  GSKLEKA +LG+  + E Q L L++
Sbjct: 623 GGKVTGSVSKKTDYLVLGEAAGSKLEKALELGITQLTEAQLLELIK 668


>gi|91204173|emb|CAJ71826.1| strongly similar to DNA ligase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 674

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 242/706 (34%), Positives = 374/706 (52%), Gaps = 49/706 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L   I YHD  YY  + P I D EYD L R    +  A P+L     P+ P  
Sbjct: 5   VKEKIEQLRCIIRYHDYKYYVENNPEISDYEYDQLLRELQNLESAHPELI---TPDSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++  +       V H  P LS++  ++ E+L++F  RI R      + +I + +E KIDG
Sbjct: 62  RVADQPISQFPTVEHKKPMLSIDNTYSNEELKEFDQRIKRMAGIDANTNIEYVVELKIDG 121

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-----LSLNIPEIIEVRGEV 191
             IT+ YE G FV  A RGDG  G+DV+A ++ I  IP           IP ++E+RGE+
Sbjct: 122 IAITLWYENGLFVRGATRGDGFRGDDVTANLKTIRQIPLKLSVSGAHYKIPPVVEIRGEI 181

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+   +F  +N+E    G   +ANPRNAA+G L+ L+P     R L  F + +G    + 
Sbjct: 182 YLPNKEFQRINEEREEKGEIQFANPRNAAAGSLKLLDPRITAKRRLKMFAYVIGYVEGME 241

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L  ++ +G PVN+  +       +V Y NE    R  L Y +DG+V KV+  +
Sbjct: 242 LESHVQCLDFIKAIGLPVNSYAQLCKNIDEVVRYCNEWDKRRGILDYMVDGMVIKVNSLA 301

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  +++PRWMIS KF  +QA TR+ +I +Q+G+TG LTPVA L PV + G  ++ 
Sbjct: 302 LQEQLGATSKAPRWMISFKFQPEQAITRIEEIVVQVGKTGTLTPVANLAPVLLAGTTVSR 361

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D +K            +D+RVGD V+V++AGE+IP+VV ++  +R    + F  
Sbjct: 362 ASLHNFDEVKR-----------KDVRVGDYVVVQKAGEIIPQVVKVLEEKRSGREKVFVE 410

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C+  V RD +          RC   L C AQ   R+++F  RDA +IEGLG   
Sbjct: 411 PACCPVCKGPVHRDNSE------VYLRCHNPL-CKAQTKRRIQYFAGRDAMDIEGLGPAI 463

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++           +   +DIF+LQ     +      +   G  S +NL  +I   R   L
Sbjct: 464 IEQLVDK----GLVDDYSDIFSLQYDDLVN------LERMGKKSSSNLISAIENSRGRDL 513

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +R I +LGI +VG   A  L++++ S                     L ++  +G ++AQ
Sbjct: 514 DRLICALGIHNVGLHTAEVLSEHFDSLGKLLNAT----------ADELKKIHEIGPVVAQ 563

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG--RHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +IVEF+QN      ++ L+ +   +          SS++  K  V TG LQK  R  A++
Sbjct: 564 SIVEFFQNKHTREIIKKLVAKGVNTEKLTSDIPRKSSKVAGKSFVITGKLQKYSRSDAEK 623

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            + +LG  VS+ +S KT+ +I G++PGSKL KA++LGV I++EE F
Sbjct: 624 LIKRLGGRVSSAVSGKTNYLIAGEDPGSKLGKAKELGVVILDEEAF 669


>gi|166364069|ref|YP_001656342.1| DNA ligase [Microcystis aeruginosa NIES-843]
 gi|254781371|sp|B0JTW2|DNLJ_MICAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166086442|dbj|BAG01150.1| DNA ligase [Microcystis aeruginosa NIES-843]
          Length = 669

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 219/706 (31%), Positives = 359/706 (50%), Gaps = 45/706 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++    L+ E+      YY    P I DS YD L R  + I   +P L     P+ P 
Sbjct: 6   EIQQRCQQLKTELQRASYAYYVLDDPFIPDSVYDQLYRELEDIEKRYPQLI---TPDSPT 62

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +++     V H+IP  SLE  +N+E+L K+  R  R+  +  D    +  E KID
Sbjct: 63  QRVGDKISSQFVSVRHNIPLYSLENAFNLEELNKWGNRWQRYVNETQD--TEYVCELKID 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYIS 194
           G+ + + YE G  V    RGDG +GED++  +R I +IP      N P I+EVRGE ++ 
Sbjct: 121 GSALALTYENGFLVRGVTRGDGVTGEDITPNVRTIRSIPLRLNIDNPPAIVEVRGEAFLP 180

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
            + F  +N E        +ANPRNAA+G LR+L+P  + +    F        +     Q
Sbjct: 181 LDTFDKINQEREEKRESLFANPRNAAAGTLRQLDPKIVDKRRLQFFAYTLHLDDNNITNQ 240

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           ++ L ++  +GF VN   +   +   +  YY + +  R  L Y  DG+V K+++   Q +
Sbjct: 241 WQSLDRLESMGFLVNPHRQLCPSLQQVAQYYQDWQEKRHQLAYMTDGVVVKINDLQRQNR 300

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   + PRW I+ K+  ++  T + DI I +GRTG +TP+A +EPV + G  +  ATLH
Sbjct: 301 LGFTQKFPRWAIALKYPAEEVPTVVKDIIINVGRTGAVTPMAVMEPVQVAGTTVQRATLH 360

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D +  L           DIRVGD V++++AGE+IP+VV I+   R     PF  P+ C
Sbjct: 361 NSDRVAEL-----------DIRVGDTVIIRKAGEIIPEVVRILPELRPNHTSPFQMPTNC 409

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P CQS +VR +        A  RC    +C A     + H+ SRDA +I GLG++ +   
Sbjct: 410 PECQSPLVRPVGE------AVTRCVNS-SCPAILRGSVVHWASRDALDIRGLGEKVVILL 462

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +       +   +D+++L++      T+I  +   G+ S  NL  ++ + +N S  R +
Sbjct: 463 IEQ----GLVTAISDLYSLEK------TEIAKLDRMGEKSALNLITAMAQSKNQSWSRVL 512

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           + LGIR+VG+  A+ LA+ + + +  A                L  +  +G+ IAQ++ +
Sbjct: 513 YGLGIRYVGSVNAKILAESFRTVEELANA----------SVTDLASIYGIGEEIAQSVYD 562

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +++   N   V  L           +   +   +  K  V TGTL  ++R +A+E + + 
Sbjct: 563 WFRIEANRDLVAKLQAAGLQFAAAAKTTTTKATLAGKTFVITGTLPTLKREEAKELIEKA 622

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G  V+  +S+KTD +++G+  GSKLEKA +LG+  + E Q L L++
Sbjct: 623 GGKVTGSVSKKTDYLVLGEAAGSKLEKALELGITQLTEAQLLELIK 668


>gi|184157078|ref|YP_001845417.1| NAD-dependent DNA ligase [Acinetobacter baumannii ACICU]
 gi|254778156|sp|B2HUJ5|DNLJ_ACIBC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|183208672|gb|ACC56070.1| NAD-dependent DNA ligase [Acinetobacter baumannii ACICU]
          Length = 673

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 252/713 (35%), Positives = 377/713 (52%), Gaps = 47/713 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L ++   + P  K+
Sbjct: 3   EQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQA---DSPTTKV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E K+DG  
Sbjct: 60  GGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVELKLDGLA 116

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVRGEVYISK 195
           I++ YE G  V    RGDG +GED++  ++ I  +P+VL     EI   +EVRGEV + K
Sbjct: 117 ISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPK 176

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF-AKG 253
           + F  LN +  A G K +ANPRNAA+G LR+L+P         F+ +G+ +         
Sbjct: 177 SGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTT 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KVD+   Q+
Sbjct: 237 MHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQ 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG  ++N TL
Sbjct: 297 QLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN   I  L           D+R+GD V V R G+VIPKV  +    R  +A+    P  
Sbjct: 357 HNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPES 405

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGLG + ++ 
Sbjct: 406 CPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGDRWVES 459

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       ++  ADI+ L   ++     +  I   G+ SV NL D+I   +  +L RF
Sbjct: 460 LLR----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASKKTTLARF 511

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGIR VG   AR LA  + + +               +  +L + P VGDI A+ I 
Sbjct: 512 IYALGIRGVGETTARMLANTFQTLEALKAA----------NVEALKKTPDVGDITAEWIA 561

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +F+  P NI  ++ L+                 +  +  V TGTL+++ R +A + +  L
Sbjct: 562 DFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQAL 620

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           GA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL 
Sbjct: 621 GARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTLS 673


>gi|297538570|ref|YP_003674339.1| DNA ligase, NAD-dependent [Methylotenera sp. 301]
 gi|297257917|gb|ADI29762.1| DNA ligase, NAD-dependent [Methylotenera sp. 301]
          Length = 682

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 253/704 (35%), Positives = 385/704 (54%), Gaps = 47/704 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
               L Q I+ +D  YY    P + DSEYD + R    I    P+L     P+ P  ++ 
Sbjct: 22  RCQQLRQLIAQYDHEYYVLDAPSVPDSEYDLVYRDLQDIERQHPNLI---TPDSPTQRVS 78

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G    +   +TH    LSL   +   +L  F  R+     ++    + + +EPK DG  I
Sbjct: 79  GSAANAFNSITHRQAMLSLNNAFEDSELEAFDKRVREALGQE---QVEYAVEPKFDGLAI 135

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKNDF 198
           T+ YE G F   A RGDG++GEDV+  +R + +IP      N P+++EVRGEV + K DF
Sbjct: 136 TLTYENGIFTQGATRGDGYTGEDVTHNLRTVRSIPMRLNCENAPKLLEVRGEVLMFKRDF 195

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA-KGQYE 256
             LN   +A G K +ANPRNAA+G LR+L+     TR L+FF +GLG      A      
Sbjct: 196 EKLNQAQLAKGEKLFANPRNAAAGSLRQLDAKITATRPLSFFAYGLGVADGAPALGSHSM 255

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            +  +  L FPV+   +      G+  YY ++  +R+ LP+DIDG+VYKV++F+ Q +LG
Sbjct: 256 AMDYLANLYFPVSEVRQLVMGVTGLRDYYQKIGQLRNELPFDIDGVVYKVNQFNQQNELG 315

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW I+HKF  ++A T + DI++Q+GRTG +TPVARL PV +GG  +TNATLHNE
Sbjct: 316 FVSRAPRWAIAHKFPAQEALTVVEDINVQVGRTGAITPVARLAPVFVGGVTVTNATLHNE 375

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D ++            +D+ +GD V V+RAG+VIP+VV +++  R  DA+ F  P+ CP 
Sbjct: 376 DEVRR-----------KDVHIGDTVSVRRAGDVIPEVVSVVLERRLADARRFEMPTACPE 424

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +++  +       A  RCTGGL C AQ+ + + HF SR A +IEGLG++ +D   +
Sbjct: 425 CGSHILKQADE------AVARCTGGLFCPAQRKQAITHFASRRAMDIEGLGEKLVDQLVE 478

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L     ++      +      S  N+ D+++  +  +L RFI++
Sbjct: 479 ----ANLVHTLADIYQLNLETLSN------LDRMATKSAQNILDALDHSKITTLARFIYA 528

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG+R+VG   A+ LAK++ +     Q           D  SL+ V  VG ++A++I  F 
Sbjct: 529 LGMRNVGEATAKDLAKHFGNLSALMQA----------DAASLLTVNDVGPVVAESISNFL 578

Query: 617 QNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
               N   + AL    +S      ++  +  +  K  V TGTL  + R  A+E +  +G 
Sbjct: 579 GEQHNQDVIRALQHAGISWPETEGKQLATGHLLGKSFVLTGTLPTLSRDAAKEMIEAVGG 638

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            VS  +S+KTD ++ G + GSKL+KAQ+LG+ I++E   L LL 
Sbjct: 639 KVSGSVSKKTDFVVAGSDAGSKLDKAQELGLVILDEAGLLALLA 682


>gi|319793880|ref|YP_004155520.1| DNA ligase, NAD-dependent [Variovorax paradoxus EPS]
 gi|315596343|gb|ADU37409.1| DNA ligase, NAD-dependent [Variovorax paradoxus EPS]
          Length = 694

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 246/719 (34%), Positives = 374/719 (52%), Gaps = 66/719 (9%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +++  H   YY    P + D+EYD L +R  A+   FP+L     P+ P  ++GG++ 
Sbjct: 14  LSEQLHKHAHLYYVLDAPELPDAEYDKLFQRLQALETEFPEL---RTPDSPTQRVGGKVL 70

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLR-----KFITRIYRFWQKKDDNS-IFFTLEPKIDGT 137
               KV H +P LS   I    D+       F  R+ +     +D   + +  E K DG 
Sbjct: 71  DGFTKVRHKVPMLS---IRTETDITPGGASAFDARVRKELGLAEDGPQVSYVCELKFDGL 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + +RYE G  V AA RGDG  GEDV+  IR +  IP  LS   P ++EVRGEVY+ + D
Sbjct: 128 AMNLRYEDGVLVQAATRGDGEVGEDVTQNIRTVREIPLRLSGKAPPVVEVRGEVYMKRAD 187

Query: 198 FLALNDEMI------AVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSE-- 248
           F ALN+             K + NPRNAA+G +R+L+P        +FF +GLG+ +   
Sbjct: 188 FDALNERQREKIAAGQKNEKIFVNPRNAAAGAVRQLDPAIAAARPLSFFAYGLGEVTPAA 247

Query: 249 ---IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                   Q++ LQ+    GFPV     +A     +++++  +   R  LPYDIDG+VYK
Sbjct: 248 EGGPDCPTQFDWLQQFHAWGFPVATQTARATGAIELIAFHENIGRQRDALPYDIDGVVYK 307

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD   LQ+QLG  +R PRW ++HK+  ++  T +L I+IQ+GRTG LTPVA+L PV +GG
Sbjct: 308 VDSIELQRQLGFVSREPRWAVAHKYPAQEQLTDVLGIEIQVGRTGKLTPVAKLAPVFVGG 367

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV----VDIIVNER 421
             +TNATLHNED  +            +D+RVGD V+V+RAG+VIP+V     + +    
Sbjct: 368 VTVTNATLHNEDEARR-----------KDVRVGDTVIVRRAGDVIPEVVGVVPESLAKPE 416

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
                 F+ P  CP+C S  VR+           +RCTGGL C+AQ+ E + HF +R A 
Sbjct: 417 GERGPVFTMPHKCPVCGSEAVREEEE------VDYRCTGGLFCAAQRKEAILHFAARRAV 470

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +++GLG + ++        A  IR   D++ L        T +  +    + S  NL D+
Sbjct: 471 DVDGLGDRLVEQLVD----ANLIRTLPDLYKL------GFTTLAGLDRMAEKSAKNLVDA 520

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +   +  +L RF+F LGIRHVG   A+ LAK++                       L+ V
Sbjct: 521 LEASKKTTLPRFLFGLGIRHVGESTAKDLAKHFGKLDAIMDATE----------QQLLEV 570

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
             VG ++AQ++  F+  P N   VE L    ++   G         +     V TGTL  
Sbjct: 571 NDVGPVVAQSLRTFFDQPHNREVVEQLRACGLTWEEGEPAARAPKPLAGLTFVITGTLPT 630

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + R +A++ +   GA V+  +S+KT  ++ G+  GSKL+KA+++GV +++E + L +L+
Sbjct: 631 LGRDEAKDKLEAAGAKVAGSVSKKTHYLVAGEEAGSKLDKAREIGVAVIDEARMLEILE 689


>gi|212634787|ref|YP_002311312.1| NAD-dependent DNA ligase [Shewanella piezotolerans WP3]
 gi|254781417|sp|B8CN91|DNLJ_SHEPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|212556271|gb|ACJ28725.1| NAD-dependent DNA ligase [Shewanella piezotolerans WP3]
          Length = 668

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 243/705 (34%), Positives = 380/705 (53%), Gaps = 50/705 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+  L Q+++ H+  YY    P I D EYD L +R   +    P+ A++   + P  ++G
Sbjct: 7   EILELTQQLNLHNYHYYVDDNPTIPDVEYDRLLKRLIELETQSPEFAKA---DSPTQRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           GE      ++TH  P LSL+ +++  +   F +RI      K   ++ +  EPK+DG  +
Sbjct: 64  GEALAKFEQITHLKPMLSLDNVFDETEFNGFHSRITD----KVGTALSYCCEPKLDGLAV 119

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198
           +I Y  G F  AA RGDG +GE+++  +R I +IP  L   N P ++EVRGEV +    F
Sbjct: 120 SIVYRDGVFERAATRGDGQTGENITENVRTIKSIPLKLRGDNFPPLVEVRGEVIMPHKAF 179

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS---EIFAKGQ 254
            ALN+   A G K + NPRNAA+G LR+L+     +R L F+ + LG         A   
Sbjct: 180 NALNERARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPESWELADSH 239

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           Y  L+++R  G PV+  V+  ++   ++ YYN+++  RS+L ++IDG+V KV++ + Q  
Sbjct: 240 YGQLEQLRSWGVPVSQEVKVCDSVTEVMDYYNDIQQRRSSLDFEIDGVVLKVNQIAHQLS 299

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A++PRW  + KF  ++  T L  +D Q+GRTG +TPVARL+PV +GG  ++NATLH
Sbjct: 300 LGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLH 359

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            ++VGD ++++RAG+VIP++V I+ ++R  DAQ   FP  C
Sbjct: 360 NADEIARL-----------GVKVGDTIIIRRAGDVIPQIVAIVADKRPDDAQDIVFPERC 408

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S V R          A  RC+GGL C AQ+ E +KHF SR A +I+G+G + ++  
Sbjct: 409 PVCDSEVERIEGE------AVARCSGGLFCEAQRKEAIKHFASRKALDIDGMGDKVVEQL 462

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     +  PAD+F L        + +  +   G  S T L  +I   +  +  RF+
Sbjct: 463 IDKE----LVESPADLFKLTA------SAMTMLERMGMKSATKLVAAIEVAKETTFARFL 512

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR VG   A +LA Y+ +                      I+V  VG I+A  +  
Sbjct: 513 YALGIREVGEATAANLAAYFKTLDAL----------KGASAEEFIKVDDVGAIVAAHLAH 562

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F   P N+  ++ L+          E       ++ +  V TGTL ++ R+ A+  +  L
Sbjct: 563 FLAQPHNLEVIDKLIAVGVSWPAIEEVAEEDLSLKGQTWVLTGTLTQLNRNDAKAQLQAL 622

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           GA V+  +S+ TD ++ G   GSKL KAQ+LGVK+++EE  + +L
Sbjct: 623 GAKVAGSVSKNTDCLVAGAAAGSKLTKAQELGVKVIDEEALIAIL 667


>gi|126729669|ref|ZP_01745482.1| DNA ligase, NAD-dependent [Sagittula stellata E-37]
 gi|126709788|gb|EBA08841.1| DNA ligase, NAD-dependent [Sagittula stellata E-37]
          Length = 714

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 293/713 (41%), Positives = 435/713 (61%), Gaps = 15/713 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
             +  ++ +QAR+EL +L   +   +  Y+    P + D+EYD LKRR   I   FP L 
Sbjct: 14  TEVGQMTEDQAREELRALSDILGQANRAYHAEDAPELTDAEYDRLKRRNAEIEARFPQLK 73

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
            +   + P  ++G        KV H +  LSL   ++ +D+R F   I R+     D  +
Sbjct: 74  LA---DSPSEQVGAAPVDGFSKVRHEVRMLSLANAFDDDDIRDFDDSIRRYLGLGTDAPL 130

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  + +RYE GK V AA RGDG  GEDV+A  R I  IP  L+   PE++E
Sbjct: 131 AFTAEPKIDGLSLALRYENGKLVRAATRGDGSEGEDVTANARTIDDIPTDLTGA-PEVLE 189

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+S  DF ALN+   A G K +ANPRNAA+G LR+L+      R L FF +  G 
Sbjct: 190 VRGEVYMSHADFEALNERQTARGGKTFANPRNAAAGSLRQLDAKITAERPLKFFAYAWGV 249

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S+  A+ Q   + ++  LGF  N      +    ++++Y ++++ R+TL YDIDG+VYK
Sbjct: 250 LSDPLAETQKGAIDRLNALGFQTNPLTALCDGPEEMLNHYRKVEAQRATLGYDIDGVVYK 309

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++ +LQ++LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG
Sbjct: 310 VNDLALQERLGFRSTTPRWAIAHKFPAELAWTRLESIDIQVGRTGALSPVARLTPVTVGG 369

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYI G D+SG  +RGG+DIR+GD V V RAG+VIPKV D+ +++R  DA
Sbjct: 370 VVVSNATLHNEDYIAGRDSSGNEIRGGKDIRIGDWVQVYRAGDVIPKVADVDLSQRPEDA 429

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           QP+ FP+ CP C S  +R+         A  RC+GGL C AQ +E+LKHFV R AF+IEG
Sbjct: 430 QPYVFPTKCPECGSDAIREEG------DAVRRCSGGLICPAQAVEKLKHFVGRSAFDIEG 483

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F+        IR P DIFTL+ R  +   +++N  G+G+ S  NL+ +I++R
Sbjct: 484 LGAKQVEQFYAD----GWIREPVDIFTLRDRYGSGIQQLKNREGWGEKSALNLFSAIDER 539

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R+I L R IF LGIRHVG   +  LA++Y ++  F   + +      + W  L+ +  VG
Sbjct: 540 RHIPLGRLIFGLGIRHVGESASNLLARHYGTWAIFEAAMKDAATMEGEAWDDLLSINGVG 599

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            ++AQ++V          +++ L+  +            S +  K +VFTG+L+++ R +
Sbjct: 600 TVLAQSLVSAMNQEAERASMDRLVAHLDVEEAVRPDTDGSPVAGKIVVFTGSLERMTRAE 659

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+     +GA VS  +S+KTDI+++G   GSK +KA++LG+ +++E+ +L L+
Sbjct: 660 AKARAEAMGAKVSGSVSKKTDIVVIGPGAGSKEKKARELGLTVLDEDAWLELI 712


>gi|116626792|ref|YP_828948.1| DNA ligase, NAD-dependent [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122251346|sp|Q01NV7|DNLJ_SOLUE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116229954|gb|ABJ88663.1| DNA ligase, NAD-dependent [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 662

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 233/706 (33%), Positives = 365/706 (51%), Gaps = 48/706 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++    E+  L +++ +H+  YY   KP I D+EYDAL  R   +    PDL     P+ 
Sbjct: 1   MKDPAVEIEKLREQLHHHEHLYYVLDKPEITDAEYDALMHRLQELETKHPDLL---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG+      KV HS P LSL+   N  +LR F  R+          +  +  E K
Sbjct: 58  PTQRVGGKPREGFIKVRHSSPMLSLDNALNEAELRDFDRRVRDLLG---GAAFRYVTELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +   Y  GKF  A  RGDG +GEDV+   R I ++P  +   +P   EVRGE  +
Sbjct: 115 MDGLSMAAHYNNGKFTEAVTRGDGTTGEDVTENARTIRSLPLRVKTKLPA-FEVRGETVM 173

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
           S+  F  LN +    G   +ANPRNAA+G LR+L P    +R L ++ + L        +
Sbjct: 174 SRRAFERLNTDRDEKGLSRFANPRNAAAGSLRQLEPQVTASRRLEYYTYFLLTEGRPAYE 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +E L  ++ +GF VN+  R  ++   ++++    +  R  LPY+IDG+V KVD    Q
Sbjct: 234 SHWEALTALKQMGFKVNDKSRPCDSIDEVLAFCAHWEGERENLPYEIDGVVVKVDSVEQQ 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  A++PRW I++K+  +QA+T +  ID+Q+GRTG LTPVA L+PV +GG  ++ AT
Sbjct: 294 RRLGFTAKAPRWAIAYKYPARQATTMIEGIDVQVGRTGALTPVANLKPVVVGGVTVSRAT 353

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I+ L            +++GD V+V+R+G+VIPKVV +     +   +PF  PS
Sbjct: 354 LHNEDEIERL-----------GLQIGDEVVVERSGDVIPKVVRVSSQGSY--RKPFKMPS 400

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C +++VR+         AA RC     C A+  E + HF SR   NI+G+G   +D
Sbjct: 401 HCPVCNTKIVREEGE------AASRCINA-NCPARLKESILHFASRGVMNIDGMGDALVD 453

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                E     +   AD++ L+            +   G  S  N+  +I+K R  SL R
Sbjct: 454 QLVDRE----IVHNIADLYDLKIEDLMD------LDRMGVKSAGNVIRNIDKSRRNSLPR 503

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            + +LGIR VG   A  LA+ + S     +               L +   VG  +A+A+
Sbjct: 504 VLTALGIRFVGERTAVFLAQAFGSMDAIERAT----------VDELQQAEEVGPKVAEAV 553

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           V+F+  P N   V+ L K        + +     +     V TGTL  + R +A++ + Q
Sbjct: 554 VQFFSIPDNRELVDRLRKADLQFTYAYSRPKGGPLTGSTFVLTGTLPNLSREEAKQLIEQ 613

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            G  V++ +S+KT  ++ G++ GSKL+KA QL ++++ E +   +L
Sbjct: 614 AGGKVASAVSKKTSYVVAGEDAGSKLDKAHQLNIRVITEAELHAML 659


>gi|220915846|ref|YP_002491150.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254781252|sp|B8JD56|DNLJ_ANAD2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219953700|gb|ACL64084.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 687

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 234/719 (32%), Positives = 362/719 (50%), Gaps = 42/719 (5%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A      L   I   D  YY   +P++ D+EYD L     A+    P+L  +   
Sbjct: 1   MKKADASARARELRDRIRAADHAYYVLDQPLLADAEYDRLMHELQALEAEHPELVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G  +    +V H  P LSL  + + ++L +F  R+ R     D   + + +E
Sbjct: 58  DSPTQRVSGAPSERFERVVHREPMLSLGNVQSDDELHEFDARVRRLLGLPDGEPVGYVVE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRA------IPTIPRVLSLNIPEII 185
           PK+DG  + + Y  G F   + RGDG +GEDV+A +R          +P  L    P  +
Sbjct: 118 PKLDGLAVELVYRDGAFTSGSTRGDGVNGEDVTANLRVVGGLGANRGVPHALEGRPPPRV 177

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEV + K  F A+N +++  G +P+ANPRNAA+G LR+L+      R L+F  +   
Sbjct: 178 EVRGEVLLFKEHFEAMNRQLVRAGEEPFANPRNAAAGTLRQLDWRVTARRPLSFIAYEAL 237

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                  +  +E L+++   GF  N   R+      +++Y + M   R  LPYD DG+V 
Sbjct: 238 LPGGDPWRTHWEKLEELAAWGFETNAENRRCRGLAEVLAYRDRMAERRFELPYDTDGIVV 297

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD+   +++LG  ++ PRW ++ K+  ++ +TR+  I   +GRTG+LTPV   +PV + 
Sbjct: 298 KVDDLDWRRRLGAASKFPRWAVAFKYPPQEEATRIRRIWASVGRTGVLTPVVDFDPVRLS 357

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           GA++  ATLHNED ++            +DI  GD VLV+RAGEVIP+VV  +   R   
Sbjct: 358 GAMVARATLHNEDEMRR-----------KDILEGDWVLVRRAGEVIPEVVKPLPERRTGA 406

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            QPF FP+ CP+C +RVVR+   K       +RCTG  AC AQ + RL HF  R A +IE
Sbjct: 407 EQPFRFPAECPVCGARVVREEGEK------VYRCTGA-ACPAQLVGRLCHFAQRRALDIE 459

Query: 485 GLGKQQLDFFFKS---EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           GLG++      +    +D A    +P +++     +              + S  N+  +
Sbjct: 460 GLGEKLAAGLVERGQVKDFADLYAVPFEVWQQLFSRPRKEQDAGAARELPEKSAQNMVAA 519

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           + + R  +L RF+F+LGI  VG   A +LA+++                   D  +L  V
Sbjct: 520 LERSRKTTLRRFLFALGIPQVGEATAATLARHFGDLARVMDA----------DEEALKGV 569

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             VG   A  I  + Q P+N   VE LL           +        K +V TG L  +
Sbjct: 570 RDVGPETAAEIRAWTQEPQNRRVVERLLAAGVTPEAEVVEAR-GPFAGKTVVLTGGLSTM 628

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            R  A+  + + G  VS  +SRKT +++ G++ GSKLEKA+ LGV+I  EE+F+ LL++
Sbjct: 629 SRDDAKAEIERRGGKVSGSVSRKTYLVVAGEDAGSKLEKARSLGVRIAGEEEFVRLLKE 687


>gi|77463176|ref|YP_352680.1| DNA ligase [Rhodobacter sphaeroides 2.4.1]
 gi|123730578|sp|Q3J355|DNLJ_RHOS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|77387594|gb|ABA78779.1| DNA ligase [Rhodobacter sphaeroides 2.4.1]
          Length = 704

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 303/714 (42%), Positives = 438/714 (61%), Gaps = 17/714 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P++ L+  +A  EL+ L + I   +  Y+ +  P I D++YDALK R  AI   FP+L R
Sbjct: 6   PVDQLTEAEAAAELARLAEAIEAANTAYHTHDAPQISDADYDALKVRNRAIEEQFPELRR 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           S   + P +++GG +     KV H +  LSLE  +++ ++  +I RI R+     D  + 
Sbjct: 66  S---DSPSDRVGGALAEGFAKVRHDVRMLSLENAFDLAEVEDWIERIRRYLGHVGD--LL 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT EPKIDG  +++RYEKG+ V AA RGDG +GE+V+   R I  +P  L    P+++EV
Sbjct: 121 FTAEPKIDGLSLSLRYEKGRLVQAATRGDGETGENVTENARTIADLPTELDGA-PDLLEV 179

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+S  DF ALN    A G++ +ANPRNAA+G LR+L+P    +R L FF +  G  
Sbjct: 180 RGEVYMSHEDFAALNGRQEAAGQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAH 239

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE  A  Q+E + ++  LGF  N   R       +++ + +++  R+ L YDIDG+VYKV
Sbjct: 240 SEPLAATQHEAIARLAALGFATNPLTRLCTGPEELLAQHAQIERQRAALGYDIDGVVYKV 299

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +LQ++LG RA +PRW I+HKFA + A T+L  IDIQ+GRTG L+PVARL+PV +GG 
Sbjct: 300 DDLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDIQVGRTGALSPVARLKPVTVGGV 359

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++ NATLHNEDYI G D+ G+ +RGG+DIRVGD V V RAG+VIPKV D+ ++ R   A 
Sbjct: 360 VVANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLDRRPEGAA 419

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP C S  +R+         +  RCTGGL C AQQ+ERLKHFVSR AF+IEGL
Sbjct: 420 PYRFPETCPECGSEAIREPG------DSVRRCTGGLICPAQQVERLKHFVSRAAFDIEGL 473

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++  ++       IR PADIF L  R +    ++EN  G+G  S  NL+ +I  RR
Sbjct: 474 GAKQVEALWRD----GWIRQPADIFELPNRYRDGMQRLENREGWGRKSAENLFAAIEARR 529

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I+L R IF+LGIRHVG   A  LA +Y S+  F   +         +W  L+ +  VG 
Sbjct: 530 RIALHRLIFALGIRHVGETTATLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGA 589

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A ++V  +       AV+AL   ++         V+S +  K +VFTGTL+K+ R +A
Sbjct: 590 VLATSLVTAFHQEAERAAVDALAAHLTVEDAEVRAPVASPVAGKIVVFTGTLEKMSRAEA 649

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +     LGA VS  +S +TD+++ G   GSK ++A  LG++ ++E+ +L L+  
Sbjct: 650 KARAEALGAKVSGSVSARTDLVVAGPGAGSKAKQAAALGIETIDEDGWLRLIGD 703


>gi|260584784|ref|ZP_05852529.1| DNA ligase, NAD-dependent [Granulicatella elegans ATCC 700633]
 gi|260157441|gb|EEW92512.1| DNA ligase, NAD-dependent [Granulicatella elegans ATCC 700633]
          Length = 668

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 220/709 (31%), Positives = 368/709 (51%), Gaps = 52/709 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
              +++  L ++++     YY   +P + D EYD        +   +P L  S   + P 
Sbjct: 4   SIEQKVQQLREQLNRWSHEYYVQDRPTVTDHEYDETYHELVRLETEYPQLVTS---DSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +     KVTH  P LSL   ++ EDL+ F  RI +   +    +I +  E KID
Sbjct: 61  QRVGGVVLEGFEKVTHQNPMLSLSNAFSKEDLQAFDDRIKKLTNR----TIDYVCELKID 116

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ G+ V  A RGDG  GED++  IR + ++P  L       IEVRGE Y+ K
Sbjct: 117 GLSVALTYQDGQLVLGATRGDGVIGEDITHNIRTVKSVPLSLEHPWS--IEVRGECYMPK 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G + +ANPRNAA+G LR+L+     +R L  F++       +    Q
Sbjct: 175 KSFQQLNQLREEEGLEVFANPRNAAAGSLRQLDSKVAASRNLAVFLYQSPSVETLEVASQ 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E+L+KM+ LGF  N      ++   + ++  +M   R+ LPY+IDG+V KV++F  Q++
Sbjct: 235 MELLEKMQALGFVTNQESVLCHSIDEVWAFIEKMTVERNNLPYEIDGIVIKVNDFKAQEE 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           +G   ++P+W I++KF  ++A T + DI+  +GRTG++TP A ++ V + G  +  A+LH
Sbjct: 295 IGFTVKAPKWAIAYKFPAEEAQTIVRDIEWTVGRTGVVTPTAVMDAVFLAGTTVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+            RDIR+GD V++ +AG++IP+V  +I+++R    +P+ FP  C
Sbjct: 355 NVDLIR-----------ERDIRIGDTVVIHKAGDIIPEVTRVILDKRPEGLEPYEFPKEC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +V            A RC     C A   E L HFVSRDA N+ G+G + +   
Sbjct: 404 PSCSNPLVHLEEE------VALRCMNPK-CPALLKEGLTHFVSRDAMNMSGVGTRIIHQL 456

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+S      ++  AD++ L   Q  +      +    + S   +  +I   +  SLER +
Sbjct: 457 FES----GLVQDVADLYHLTMEQLLT------LDKIKEKSAQKILQAIETSKQNSLERLL 506

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             LGIR+VG++ A+ LA ++ + +N  +               L+ +  +G +IA +++ 
Sbjct: 507 TGLGIRNVGSKAAKDLAMHFETMENLQKAT----------VEELVAIEGLGLVIAHSVLA 556

Query: 615 FYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++        +E L +           +   +  S +  K +V TGTL+++ R +A+E +
Sbjct: 557 YFNQETVQDMLEELKEAGVNMRYLGKAKVAISEDSLLAGKTVVLTGTLEQMTRQEAKEAI 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             LG  V+  +S+KTDI+I G   GSKL KA+ LG+ + +EEQF  +++
Sbjct: 617 ESLGGKVTGSVSKKTDIVIAGAQAGSKLTKAESLGILVWDEEQFRTMIE 665


>gi|157964864|ref|YP_001499688.1| NAD-dependent DNA ligase LigA [Rickettsia massiliae MTU5]
 gi|166216234|sp|A8F2K5|DNLJ_RICM5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157844640|gb|ABV85141.1| DNA ligase, NAD-dependent [Rickettsia massiliae MTU5]
          Length = 689

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 272/712 (38%), Positives = 419/712 (58%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S ++A+K L  L  +I+ ++  YY    P++ DSEYD L      +   FP L   
Sbjct: 4   IDLISEKEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  K+G ++     KVTH +P LSL   ++ +D+R F+ RI  F +  +   I  
Sbjct: 64  ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKNFLRLNEFAPI-- 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G     A RGDG+ GED++A I+ I   P     N+PE +EVR
Sbjct: 119 FCEPKIDGLSFSAVYKNGVLTTGATRGDGYVGEDITANIKTIKNFPH-KIDNVPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN E    G+  +ANPRNAA+G LR+L+ +    R L +FV+  G T 
Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDASITAKRPLKYFVYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++  GF +N   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNREDLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  
Sbjct: 298 DFALQNRMGFIARSPRFATAHKFPAIIGQTQLLSITVQVGRTGTLTPVAELEPIEIGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIPK++ +  ++R  D   
Sbjct: 358 VSRATLHNFQEIAR-----------KDVRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTAT 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FC  C S++               RC  GL C AQ  ER++HFVS++A +IEGLG
Sbjct: 407 FDTPLFCLSCNSKLHYMPE------DIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F          I  P DIF L+ +  +S  K+EN+ G+G  SV NL+ +I K +N
Sbjct: 461 RKQVEFLIDK----GLISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G + A+ LA+   SY NF  ++  +  +  D +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREVGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I   I++F+    NI  ++ L + ++    +  +  SS + +K +VFTG+L  I R +A+
Sbjct: 577 ILVDIIDFFDVKENIELIKKLGEILNIEDYKETREQSS-LTDKIVVFTGSLPTISRAEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               +LGA V+A +S  TD+++ G + GSKL+KA++L +KI++EE++L L++
Sbjct: 636 ATAEKLGAKVTAGVSSNTDLVVAGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687


>gi|262373317|ref|ZP_06066596.1| DNA ligase, NAD-dependent [Acinetobacter junii SH205]
 gi|262313342|gb|EEY94427.1| DNA ligase, NAD-dependent [Acinetobacter junii SH205]
          Length = 677

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 250/716 (34%), Positives = 381/716 (53%), Gaps = 47/716 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +      +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+  +++  
Sbjct: 1   MEQNSVIEQMRQLIQLIAKHNHAYYVMDQPTITDSEYDHLFHQLKALEQQYPEFMQADT- 59

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P NK+GG+       VTH++P LSL  ++N +DL  F  RI        +  + + +E
Sbjct: 60  --PTNKVGGQALSKFESVTHAVPMLSLGNVFNQDDLFAFARRIDERL---PNQKVQYEVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPEIIEVR 188
            K+DG  I++ YE G  +    RGDG +GED++  ++ I  +P++       IP+++EVR
Sbjct: 115 LKLDGLAISLWYENGVLIRGVTRGDGETGEDITQNVKTIRNLPKILSSQHQAIPQLLEVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLG-KT 246
           GEV + K+ F  LN +  A G K  ANPRNAA+G LR+L+P         F+ +G+    
Sbjct: 175 GEVLMPKSGFEKLNADQEAKGEKTLANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCE 234

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ L  +   GF +        +   +   Y +++  R  L  +IDG+V KV
Sbjct: 235 PHHGLTTMHDSLHWLTKFGFEIAERQYLCESIEEVQQRYEQIQLERPNLKVEIDGMVVKV 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T++ +ID Q+GRTG LTPVARL PV +GG 
Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLAPVFVGGV 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+RVGD V V R G+VIPKV  +    R  DA+
Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVERVWAEFRPADAE 403

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P+ CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 404 LVYLPTNCPVCDSPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++           +R  ADI+ L   ++    K+ +I   G+ SV NL D+I+  +
Sbjct: 458 GDRWVESLLH----LDLLRDVADIYHLHEHRE----KLLSIEKMGEKSVQNLIDAIDASK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + ++                +  +L + P VGD
Sbjct: 510 KTTLARFIYALGIRGVGETTARMLANTFQTFDALKAA----------NIDALKKTPDVGD 559

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ IV+F+Q   N+  +E LL                 +  +  V TGTL+ + R +A
Sbjct: 560 ITAEWIVDFFQAEHNLEVLERLLAAG-IHWDAPTAPTRQPLNGESWVVTGTLESMGRDEA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            + +  LGA VS  +S KT  ++ G+  GSKL+KAQ+L +++MNE++FL  L QY 
Sbjct: 619 TQRLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAQKLDIRVMNEQEFLDFLAQYG 674


>gi|258627076|ref|ZP_05721872.1| DNA ligase [Vibrio mimicus VM603]
 gi|258580594|gb|EEW05547.1| DNA ligase [Vibrio mimicus VM603]
          Length = 670

 Score =  549 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 244/712 (34%), Positives = 382/712 (53%), Gaps = 48/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L  L Q +  H   YY    P I D+EYD L R    +  A P+L     P+ 
Sbjct: 1   MSNVEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG        V H IP LSL+  ++  +L  F  R+             F  EPK
Sbjct: 58  PSLRVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRI--PAVQQSHFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L  +   + +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPVRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIIDGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            + VGD V+++RAG+VIP++V +++  R  DA+P  F
Sbjct: 356 ATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAKPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS + R          A  RCTGGL C AQ+ E LKHFVSR A +++GLG + 
Sbjct: 405 PACCPVCQSEIERIEGE------AVARCTGGLICQAQRKEALKHFVSRKAMDVDGLGDKV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L+      T ++  +   G  S  N+ D++NK +  +L
Sbjct: 459 IEQLVDRE----MVSTPADLFRLR------TGELTILERMGPKSAQNVIDALNKAKQTTL 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A +LA+++L+    AQ               LI VP VG ++A 
Sbjct: 509 PRFLYALGIREVGEATALNLAQHFLTLDAIAQA----------SMDQLIEVPDVGGVVAS 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+   RN   +  L++           +     S +  K +V TG+  ++ R+ A+
Sbjct: 559 HLHAFFAQSRNQQVIAELIELGITWPAMAVASSIAADSALAGKVVVLTGSFTQLSRNDAK 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++++E   +  L+
Sbjct: 619 AALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQVLDEHALIDFLK 670


>gi|82701780|ref|YP_411346.1| DNA ligase, NAD-dependent [Nitrosospira multiformis ATCC 25196]
 gi|123754406|sp|Q2YBB7|DNLJ_NITMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|82409845|gb|ABB73954.1| DNA ligase, NAD-dependent [Nitrosospira multiformis ATCC 25196]
          Length = 707

 Score =  549 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 254/733 (34%), Positives = 381/733 (51%), Gaps = 68/733 (9%)

Query: 12  LSI--EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +S    +  + +  L   I  H+  YY+   P I D+++D L R  + +    P+L    
Sbjct: 1   MSERLSEISRHMRELRDAIELHNIRYYELDTPTIPDADFDKLFRELEELEQRHPELI--- 57

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++G     +  +V H  P LSL   +   ++  F  R+ +         + + 
Sbjct: 58  TPDSPTQRVGIPPLKAFPQVVHRTPMLSLSNAFTEGEVEAFDRRVRQSLGIA---QVEYA 114

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-----RVLSLNIPEI 184
           +EPK DG  I++ YE G  V  A RGDG+ GEDV+  ++ I +IP        S  +P  
Sbjct: 115 VEPKFDGLAISLCYENGMLVSGATRGDGYIGEDVTLNLKTIRSIPLGLRAGDGSAEVPAF 174

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGL 243
           +EVRGEV + K DF  LN +      K + NPRNAA+G LR+L+      R L FF +G+
Sbjct: 175 LEVRGEVLMLKADFERLNRQQREKNEKTFINPRNAAAGSLRQLDPCITANRNLRFFAYGI 234

Query: 244 GKTS--EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           G      +       +L  +  L FPV    R      G++ Y++E+  +R  L YDIDG
Sbjct: 235 GVCEGGNVPHDTHSHLLDYLSSLRFPVMRERRTVTGVAGLLEYHHEINGLREQLSYDIDG 294

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
            VYKV+E   Q++LG  +R+PR+ ++HKF  ++A+T LL ID+Q+GRTG LTPVARL+PV
Sbjct: 295 TVYKVNELEYQEKLGFVSRAPRFALAHKFPAQEATTELLGIDVQVGRTGALTPVARLKPV 354

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GGA +TNATLHNED I+            +D+ +GDRV V+RAG+VIP+VV +    R
Sbjct: 355 FVGGATVTNATLHNEDEIRR-----------KDVMIGDRVTVRRAGDVIPEVVAVQKESR 403

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             +A+PF  P  CP+C SR +R             RCTGGL C AQ+ + + HF SR A 
Sbjct: 404 PSNAKPFVMPEHCPVCGSRTIRLPGET------LTRCTGGLFCPAQRKQAILHFASRRAM 457

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI GLG + +D    +      IR PAD++      +     +  +   G+ S  N+ + 
Sbjct: 458 NIHGLGDKLVDHLVDNA----IIRTPADLY------KLGLAALAALDRMGEKSAGNIINE 507

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I K ++ +L RFI+SLGIR+VG   AR LA+Y+                   D  +L +V
Sbjct: 508 IEKSKDTTLARFIYSLGIRNVGEATARDLARYFGGLDRLMDA----------DVETLQQV 557

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---------------RHEKNVSSE 646
             VG ++AQ+I +F+    N   VE L                              SS+
Sbjct: 558 SDVGPVVAQSIADFFGERHNREVVEQLRAAGIRWKEGAGTQTTDHAAGSAHPGAAAASSK 617

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           I  +  V TGTL  + R +A+E +  +G  V+  +S+KTD ++ G + GSK +KA +LGV
Sbjct: 618 IAGRSFVLTGTLPTMSREEAREKIEAMGGKVAGSVSKKTDYVVAGADAGSKYDKALELGV 677

Query: 707 KIMNEEQFLFLLQ 719
            +++E + + LLQ
Sbjct: 678 ALLDEAELIRLLQ 690


>gi|323490410|ref|ZP_08095622.1| DNA ligase [Planococcus donghaensis MPA1U2]
 gi|323395909|gb|EGA88743.1| DNA ligase [Planococcus donghaensis MPA1U2]
          Length = 668

 Score =  549 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 239/715 (33%), Positives = 387/715 (54%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   +A + +  L + +  +   YY   KP + D+ YD L      +   +PDL     P
Sbjct: 1   MDRLKAEQRVDELNEMLRNYGHAYYVLDKPAVPDAIYDQLLNELIDLETLYPDLVF---P 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG    ++ KVTH  P LSL  ++  EDLR+F  R+      K    + +  E
Sbjct: 58  DSPTQRVGGAPLSTVDKVTHERPMLSLSNVFGEEDLREFDKRVRSGAGDK----VDYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE GKFV  A RGDG  GED++  +R I  IP  L   +   +EVRGEV
Sbjct: 114 LKIDGLAVSLLYEDGKFVKGATRGDGRVGEDITVNLRTIRAIPLKLKDAV--TLEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG-KTSEI 249
           ++ K  F ALN++    G + +ANPRNAA+G LR+L+P    +R L+ F++G+G      
Sbjct: 172 FMPKKSFHALNEQRSEQGEELFANPRNAAAGSLRQLDPKIAASRNLDVFIYGIGGDGETY 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF  N   +   +   +++Y  +    R+ LPY+IDG+V KV++F
Sbjct: 232 RLAEHDESLDYLAKLGFKTNQERQVCTSVEEVLAYIEKWTEKRNDLPYEIDGIVIKVNQF 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q++LG  A+SP+W  ++KF  ++  T + DI++ +GRTG++TP A L+PV++ G  + 
Sbjct: 292 LYQQELGFTAKSPKWATAYKFPAEEVMTTVRDIELSVGRTGVVTPTAILDPVSVAGTTVQ 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED IK            +DIR+GD+V++++AG++IP+VV +I+++R  +  PF 
Sbjct: 352 RASLHNEDLIK-----------EKDIRIGDKVIIRKAGDIIPEVVSVILDQRTGEELPFE 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++
Sbjct: 401 MPTHCPACDSELVRIEGE------VALRCVNPQ-CPAQITEGLIHFVSRNAMNIDGLGEK 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++  ++       +   +DI+ L + Q         +    D S +NL  +I+  R+ S
Sbjct: 454 VIEQLYRE----GLVHDISDIYKLTKEQLV------ELDRMADKSASNLVAAIDASRSNS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +E+ +F LGIRHVG   AR L++++ + +                   LI V  +GD +A
Sbjct: 504 MEKLLFGLGIRHVGERGARILSEHFGTLEQLIAATK----------EELIEVHEIGDKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIG----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            +IV ++ N      VE L +              +  ++    KK+V TG L+++ R +
Sbjct: 554 DSIVMYFDNEEVRALVERLREANVNLSYTGTRVRVEEGANAFAGKKIVLTGKLEQMTRQE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A   +  LG  ++  +S+KTD++I G+  GSKL+KA++L V+I +EE+ +  L +
Sbjct: 614 ASAQIEALGGKLTGSVSKKTDLLIAGEEAGSKLDKARELKVEIWDEERLVEELNK 668


>gi|257095174|ref|YP_003168815.1| NAD-dependent DNA ligase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047698|gb|ACV36886.1| DNA ligase, NAD-dependent [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 675

 Score =  549 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 262/706 (37%), Positives = 383/706 (54%), Gaps = 46/706 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L SL  EI  +D  YY    P I D++YD L R   A+    P+L      + P  ++
Sbjct: 5   ERLHSLRAEIERYDHEYYVLDAPSIADADYDRLFRELQALEAEHPELV---SRDSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG        VTH+   LSL   +  +++  F  R+        D  + ++ EPK DG  
Sbjct: 62  GGAPLAEFAAVTHATAMLSLNNAFADDEVAAFDRRVREGL--ATDGEVDYSAEPKFDGLA 119

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197
           + + Y KG  V  A RGDG +GE+V+A +R + ++P  L   + P  +EVRGEV + ++D
Sbjct: 120 VGLSYAKGILVCGATRGDGSTGENVTANLRTLRSVPLRLRASDWPAALEVRGEVLMWRSD 179

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKGQY 255
           F  LN      G K + NPRNAA+G LR+L+P     R L FF +G+             
Sbjct: 180 FERLNARQREKGEKEFVNPRNAAAGGLRQLDPRITAQRPLRFFAYGIASGERAGLPATHS 239

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
             L ++   GFPV    R+     G+++YY +M S R++LPYDIDG+VYK+D+ + Q++L
Sbjct: 240 AQLDQLERWGFPVARERRRVTGLAGLLAYYADMGSRRASLPYDIDGVVYKLDDLAAQERL 299

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PR+ ++HKF  ++A T LLDI IQ+GRTG LTPVARL PV +GG  + NATLHN
Sbjct: 300 GFLSRAPRFAVAHKFPAEEAVTELLDISIQVGRTGALTPVARLAPVFVGGVTVNNATLHN 359

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED I+            +++R+GD V+V+RAG+VIP+VV ++ + R   A+ F  P+ CP
Sbjct: 360 EDEIRR-----------KNVRIGDVVVVRRAGDVIPEVVRVVPDRRPAGAREFVMPTSCP 408

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C SRVVR  +       A  RC+GGL C AQ+ + L HF SR A +IEGLG + ++   
Sbjct: 409 VCGSRVVRSADE------AVARCSGGLYCPAQRKQALLHFASRRALDIEGLGDKLVEQLV 462

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
            S      +R P D++ L          + ++    D S  NL  +I + +  +L RFIF
Sbjct: 463 DSA----IVRTPGDLYRL------GLLALASLERMADKSAGNLLAAIERSKRTTLARFIF 512

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR+VG   AR LA+++ S                 D  SL +VP VG  +AQ+I +F
Sbjct: 513 ALGIRNVGEATARELARHFGSLDRLLAA----------DEDSLRQVPDVGPTVAQSIRQF 562

Query: 616 YQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
              P N+  +E L       S G            +  V TGTL  + R  A+  +   G
Sbjct: 563 CSEPHNLEVIEQLRAAGLVWSEGEPAVPAGGVFAGQVFVLTGTLPSLTREAAKAMIEAAG 622

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             VS  +S+KT  ++ G   GSKLE+A QLGV++++E Q L LL+Q
Sbjct: 623 GKVSGSVSKKTSFVVAGAEAGSKLERALQLGVQVIDEGQLLGLLEQ 668


>gi|295702476|ref|YP_003595551.1| DNA ligase, NAD-dependent [Bacillus megaterium DSM 319]
 gi|294800135|gb|ADF37201.1| DNA ligase, NAD-dependent [Bacillus megaterium DSM 319]
          Length = 668

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 241/715 (33%), Positives = 389/715 (54%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A+  +  L   ++ +   YY   +P + D+EYD L      I  +FP+L  +   
Sbjct: 1   MEFETAKSRVQELRDLLNQYGYEYYVLDQPSVPDAEYDKLMNELIEIEDSFPELKTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IGG++  +  KV H    LSL   +N EDLR F  R+     +  ++   +  E
Sbjct: 58  DSPTQRIGGQVLDAFEKVQHQTSMLSLGNAFNEEDLRDFDRRVR----QAVEDEFSYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G  V  A RGDG +GE+++  ++ I +IP  +   +   +EVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGYLVLGATRGDGTTGENITENLKTIRSIPLRIKEPLS--MEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           ++ +  F ALN+  +     P+ANPRNAA+G LR+L+P     R L+ FV+ +  T E+ 
Sbjct: 172 FMPRKSFKALNEAKMERDEVPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYAMTDTGELE 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   +   T   +++Y    ++ R  L YDIDG+V KVD F 
Sbjct: 232 IDSHSESLNLLDELGFKTNKERQTCETIDDVIAYIESWQTQRPELSYDIDGIVVKVDSFD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  A+SPRW I++KF  ++  T+L++I++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 QQAELGTTAKSPRWAIAYKFPAEEVVTKLVNIELTVGRTGVITPTAILEPVQVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I  +R  + Q F+ 
Sbjct: 352 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIEEKRTGEEQEFTM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC    +C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTHCPECESELVRLEEE------VALRCINP-SCPAQIREGLIHFVSRNAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+ +     I+  ADI+TL ++Q         +   G+ S  NL  +I   +  SL
Sbjct: 454 ISQLFREQ----LIKDVADIYTLTKQQLI------ELERMGEKSADNLIAAIEASKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ A++LA+++ +     +            +  L+ +  +G  +A 
Sbjct: 504 ERLLFGLGIRHVGAKAAKTLAQHFETIDKLTKAT----------YDELVAINEIGAKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           AIV ++        +  L +       +       +NV S    K +V TG L+++ R++
Sbjct: 554 AIVAYFTQEEVQELIHELKEYGVNLTYKGPKLVSVENVDSVFAGKTVVLTGKLEQLSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  V+  +S+KTD+++ G+  GSKL KA +L +++ +E + L  L +
Sbjct: 614 AKAQIEALGGKVTGSVSKKTDLVVAGEEAGSKLTKANELEIEVWDEARLLTELNK 668


>gi|94971682|ref|YP_593730.1| DNA ligase, NAD-dependent [Candidatus Koribacter versatilis
           Ellin345]
 gi|122986011|sp|Q1IHJ4|DNLJ_ACIBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94553732|gb|ABF43656.1| DNA ligase, NAD-dependent [Candidatus Koribacter versatilis
           Ellin345]
          Length = 673

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 231/714 (32%), Positives = 358/714 (50%), Gaps = 53/714 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +   K+   L +++ YH+  YY    P I D++YD +     A+    P+L     P+ P
Sbjct: 5   KDPAKQAEDLREKLRYHEHRYYVLDDPEISDADYDVMMNELKALEAKHPELL---TPDSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG+      KV HS P LSL+  +N E+LR +  R+     K     I +  E K+
Sbjct: 62  TQRVGGKPREGFVKVAHSAPMLSLDNAYNEEELRDWARRVEELSGKA---EIEYECELKL 118

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP------RVLSLNIPEIIEVR 188
           DG  + +RY+  +FV A  RGDG  GEDV+  +R + ++P       +   ++    EVR
Sbjct: 119 DGLSMALRYQDARFVLAVTRGDGSIGEDVTLNLRTVKSVPLGVSSATLKKTHMLGDFEVR 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV      F  +N++    G   +ANPRNAA+G +R L P     R L+F+ + L    
Sbjct: 179 GEVIFPTKSFEKMNEDREKQGLAKFANPRNAAAGAVRVLEPNITAQRRLDFYAYFLLVDG 238

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            +    Q E L  +  LGF VN+      +   ++ + ++ +  R  LPY+IDG+V KV+
Sbjct: 239 RVHIDRQSEALDTLEKLGFKVNSNRAVFKSIDDVLKFIHKKEEDREKLPYEIDGVVIKVN 298

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             +L ++LG   ++PRW I++K+A + A T++ DI +Q+GRTG LTPVA L+PV IGG  
Sbjct: 299 STALWQRLGFTGKAPRWAIAYKYAARAAVTQVEDILVQVGRTGKLTPVAALKPVPIGGTT 358

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN D I  L            + +GD V V+R G+VIPKVV +I ++ HP  + 
Sbjct: 359 VSRATLHNMDEIDRL-----------GLLIGDWVQVERGGDVIPKVVKVIDDKDHPRGKK 407

Query: 428 -FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  P  CP C   VVR          A HRC     C A+  E + HF SR   NIEG+
Sbjct: 408 KFKMPERCPECGGHVVRTEGE------ADHRCVNA-NCPAKLRESILHFASRGVMNIEGM 460

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G   ++           ++  ADI+ L   +  S      +   G  S  N+ D I   +
Sbjct: 461 GDSLVNQLVDR----GLVKNVADIYELDEEKLLS------LERMGKKSAQNILDEIKGTK 510

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            + LER I+ LGIR VG   A+ LA+++ S     +     +    +           G 
Sbjct: 511 KLPLERVIYGLGIRMVGERTAQFLAEHFGSLDGVMKATEEELLEVEEV----------GP 560

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            IAQ+I EF+  P N   V+ L        G  ++   + +  +  V TG+L    R +A
Sbjct: 561 RIAQSIHEFFAEPSNRELVKRLEAAGLQFKGVKKER-GTALAGQTFVLTGSLPTYSRDEA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ +   G  VS  +S+KT+ ++ G+  GSKL+KA+ LGV +++E+    LL +
Sbjct: 620 KKLIEDAGGKVSGSVSKKTNYVVAGEEAGSKLDKARDLGVAVIDEDALKKLLGK 673


>gi|88861394|ref|ZP_01136024.1| NAD-dependent DNA ligase [Pseudoalteromonas tunicata D2]
 gi|88816660|gb|EAR26485.1| NAD-dependent DNA ligase [Pseudoalteromonas tunicata D2]
          Length = 673

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 255/715 (35%), Positives = 398/715 (55%), Gaps = 47/715 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E    ++++L+ ++  ++  YY    P + DSEYD + R   A+   +P        
Sbjct: 1   MT-ESVLSQIAALKVQLEEYNYQYYVLDNPSVPDSEYDRVMRELIALETQYPQFL---SA 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GGE   S  +V H +P LSL+  ++  + R F  R+      KD  ++ F  E
Sbjct: 57  DSPSQKVGGEALGSFSQVQHLVPMLSLDNAFDETEFRSFNKRLQDRL--KDTTTLTFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  ++I Y+ G  V AA RGDG +GE+++  ++ I  +P  L    IP  +EVRGE
Sbjct: 115 PKLDGLAVSILYQDGVLVQAATRGDGQTGENITENVKTIRNVPLKLRGESIPHRLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE- 248
           V++    F  +N+  I    K +ANPRNAA+G LR+L+      R L F+ +G+G     
Sbjct: 175 VFMDSAGFAKMNELAIKNDGKVFANPRNAAAGSLRQLDSKITAKRPLMFYAYGMGIIEGG 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +     +  LQ +   G P++   +        ++YY ++ + RS L Y+IDG+V KV++
Sbjct: 235 VVPDDHFAQLQALGDWGLPMSPETKLVTGVDDALAYYQDIMNRRSQLKYEIDGVVIKVND 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+ LG  AR+PRW I+ KF  ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  +
Sbjct: 295 KALQQTLGFVARAPRWAIAFKFPAQEEMTQLLDVEFQVGRTGAITPVARLEPVFVGGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN+D I+ L            +++GD V+++RAG+VIP++  +++ ER  DA+  
Sbjct: 355 SNATLHNQDEIERL-----------GVKIGDTVIIRRAGDVIPQITQVVLAERKTDAKDI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FPS CP+CQS+V R +        A  RC+GGL C AQ+ E +KHFVSR AF+I+G+G 
Sbjct: 404 VFPSNCPVCQSKVERTVGE------AVARCSGGLVCGAQRKEAIKHFVSRKAFDIDGMGD 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   + E     I  PA+IFTL++        +E++   G  S   L  +I   +  
Sbjct: 458 KIVEQLVERE----LIHTPAEIFTLRQ------GHLESLERMGPKSAEKLVAAIGNAKQT 507

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RF++SLGIR VG   A +LA +YL+                    SL  V  VG+I+
Sbjct: 508 TLARFLYSLGIREVGEATALNLANHYLTLDAIMAA----------SVDSLQEVADVGEIV 557

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQ 667
           A+ +  F++   N   V+AL+           K+     +     V TGTL ++ R  A+
Sbjct: 558 AKHVNFFFREAHNRAVVDALIAAGITWAALEPKSEAEQPLAGLTYVLTGTLLQMGRSDAK 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             +  LGA VS  +S KTD ++ GD  GSKL KAQ+LG+K++ E+  + LL QYN
Sbjct: 618 NRLQALGAKVSGSVSAKTDALVAGDKAGSKLTKAQELGIKVLFEDDLIALLAQYN 672


>gi|163751929|ref|ZP_02159142.1| DNA ligase, NAD-dependent [Shewanella benthica KT99]
 gi|161328212|gb|EDP99377.1| DNA ligase, NAD-dependent [Shewanella benthica KT99]
          Length = 690

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 254/722 (35%), Positives = 383/722 (53%), Gaps = 60/722 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP----- 71
             +E+  L  EI+ HD  Y+    PII DSEYD LK +   + + FP L    D      
Sbjct: 8   ISQEIEHLISEINEHDHRYHVLDDPIITDSEYDRLKIKLKKLENRFPALNLILDLNAVSE 67

Query: 72  --------NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
                   + P  ++GG+      ++TH  P LSL+ ++N E+   F  R+         
Sbjct: 68  GVHTSIRFDSPSRRVGGKALSKFDQITHLKPMLSLDNVFNDEEFEAFHARLTNRLG---- 123

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIP 182
            ++ F  EPK+DG  ++I Y  G    AA RGDG  GED++  +R I +IP  L   N P
Sbjct: 124 TTLRFCCEPKLDGLAVSILYRDGVLERAATRGDGEIGEDITENVRTIRSIPLKLRGDNFP 183

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
            ++EVRGEV + K  F +LN+   A G K + NPRNAA+G LR+L+     +R L F+ +
Sbjct: 184 PLLEVRGEVIMPKQAFDSLNERARAKGEKEFVNPRNAAAGSLRQLDSKITASRSLGFYAY 243

Query: 242 GLGKTSEIFA---KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            LG             Y  L +++  GFPV+  V+Q ++   +++YY ++ + RS L Y+
Sbjct: 244 ALGVVEPETWGLADHHYGQLLQLKSWGFPVSAEVKQCDSVSEVIAYYTDIMTRRSALAYE 303

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KVD  + Q +LG  A++PRW  + KF  ++  T L  +D Q+GRTG +TPVARL
Sbjct: 304 IDGVVIKVDNIAQQLKLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARL 363

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +P+ +GG  ++NATLHN D I  L            +++ D V+V+RAG+VIP++V I+ 
Sbjct: 364 KPIFVGGVTVSNATLHNADEIARL-----------GVKIKDTVIVRRAGDVIPQIVAIVA 412

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            +R  DA    FP  CP+C S V R             RCTGGL C AQ+ E +KHF SR
Sbjct: 413 EKRPDDACEIEFPQTCPVCDSLVERIEGE------VVARCTGGLFCEAQRKEAIKHFASR 466

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+G+G + ++     E     +  PAD+F L      S + I  +   G  S TNL
Sbjct: 467 KALDIDGMGDKVVEQLIDKE----LVESPADLFKL------SASAITMLDRMGLKSATNL 516

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   +  +  RF+++LGIR VG   A +LA Y+ S                 +    
Sbjct: 517 VAAIEVAKKTTFPRFLYALGIREVGEATAANLANYFKSLDKLKAA----------NAEEF 566

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGT 657
           I+V  VG I+AQ +  F+    N+  V++L++         E    S  ++ +  V TGT
Sbjct: 567 IKVDDVGTIVAQHLTHFFAQSHNVEVVDSLIEAGVNWPVIEEVAEESLSLKGQTWVLTGT 626

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L ++ R+ A+  +  LGA V+A +S+ TD ++ G+  GSKL KAQ LG+KI++E+  L +
Sbjct: 627 LTQLNRNDAKAQLQALGAKVAASVSKNTDCLVAGEAAGSKLTKAQDLGIKILDEDGLLAV 686

Query: 718 LQ 719
           L 
Sbjct: 687 LA 688


>gi|15610151|ref|NP_217530.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Rv]
 gi|31794191|ref|NP_856684.1| NAD-dependent DNA ligase LigA [Mycobacterium bovis AF2122/97]
 gi|121638896|ref|YP_979120.1| NAD-dependent DNA ligase LigA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148662865|ref|YP_001284388.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Ra]
 gi|148824204|ref|YP_001288958.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis F11]
 gi|161350059|ref|NP_337609.2| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis CDC1551]
 gi|167967816|ref|ZP_02550093.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Ra]
 gi|215431968|ref|ZP_03429887.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054]
 gi|219559049|ref|ZP_03538125.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T17]
 gi|224991388|ref|YP_002646077.1| NAD-dependent DNA ligase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254365649|ref|ZP_04981694.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis str.
           Haarlem]
 gi|260188040|ref|ZP_05765514.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis CPHL_A]
 gi|260206343|ref|ZP_05773834.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis K85]
 gi|289448688|ref|ZP_06438432.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CPHL_A]
 gi|289553196|ref|ZP_06442406.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 605]
 gi|289571216|ref|ZP_06451443.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis T17]
 gi|289575722|ref|ZP_06455949.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis K85]
 gi|289755132|ref|ZP_06514510.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054]
 gi|294993895|ref|ZP_06799586.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 210]
 gi|297635642|ref|ZP_06953422.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN 4207]
 gi|297732640|ref|ZP_06961758.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN R506]
 gi|306777310|ref|ZP_07415647.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu001]
 gi|306785860|ref|ZP_07424182.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu003]
 gi|306789901|ref|ZP_07428223.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu004]
 gi|306794711|ref|ZP_07433013.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu005]
 gi|306798954|ref|ZP_07437256.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu006]
 gi|306969091|ref|ZP_07481752.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu009]
 gi|306973427|ref|ZP_07486088.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu010]
 gi|307081136|ref|ZP_07490306.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu011]
 gi|307085740|ref|ZP_07494853.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu012]
 gi|313659972|ref|ZP_07816852.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN
           V2475]
 gi|54036987|sp|P63973|DNLJ_MYCTU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|54036988|sp|P63974|DNLJ_MYCBO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215822|sp|A1KN09|DNLJ_MYCBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216214|sp|A5U726|DNLJ_MYCTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781375|sp|C1AGD0|DNLJ_MYCBT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|2791611|emb|CAA16099.1| PROBABLE DNA LIGASE [NAD DEPENDENT] LIGA (POLYDEOXYRIBONUCLEOTIDE
           SYNTHASE [NAD+]) [Mycobacterium tuberculosis H37Rv]
 gi|31619786|emb|CAD96726.1| PROBABLE DNA LIGASE [NAD DEPENDENT] LIGA (POLYDEOXYRIBONUCLEOTIDE
           SYNTHASE [NAD+]) [Mycobacterium bovis AF2122/97]
 gi|121494544|emb|CAL73025.1| Probable dna ligase [nad dependent] ligA [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|134151162|gb|EBA43207.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148507017|gb|ABQ74826.1| DNA ligase (NAD dependent) LigA [Mycobacterium tuberculosis H37Ra]
 gi|148722731|gb|ABR07356.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis F11]
 gi|224774503|dbj|BAH27309.1| NAD-dependent DNA ligase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289421646|gb|EFD18847.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CPHL_A]
 gi|289437828|gb|EFD20321.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 605]
 gi|289540153|gb|EFD44731.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis K85]
 gi|289544970|gb|EFD48618.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis T17]
 gi|289695719|gb|EFD63148.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054]
 gi|308214358|gb|EFO73757.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu001]
 gi|308329532|gb|EFP18383.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu003]
 gi|308333670|gb|EFP22521.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu004]
 gi|308337029|gb|EFP25880.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu005]
 gi|308340842|gb|EFP29693.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu006]
 gi|308353381|gb|EFP42232.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu009]
 gi|308357226|gb|EFP46077.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu010]
 gi|308361179|gb|EFP50030.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu011]
 gi|308364771|gb|EFP53622.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu012]
 gi|323718395|gb|EGB27569.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CDC1551A]
 gi|326904628|gb|EGE51561.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis W-148]
 gi|328457668|gb|AEB03091.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 4207]
          Length = 691

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 219/723 (30%), Positives = 351/723 (48%), Gaps = 43/723 (5%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    +  +  ++  +L +E+  H   YY    PII D+E+D L RR +A+    P+L  
Sbjct: 4   PDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL-- 61

Query: 68  SEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              P+ P   +GG         V H    LSL+  +  ++L  +  RI+           
Sbjct: 62  -RTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH--- 117

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIP 182
            +  E KIDG  +++ Y +G+   A+ RGDG +GEDV+   R I  +P  L       +P
Sbjct: 118 -YLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVP 176

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
           E++EVRGEV+   +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    H
Sbjct: 177 EVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICH 236

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           GLG          ++    +R  G PV+     A    G+    +     R  + ++IDG
Sbjct: 237 GLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVDE +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV
Sbjct: 297 VVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPV 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ +  ATLHN   IK            + + +GD V++++AG+VIP+V+  +V  R
Sbjct: 357 KVAGSTVGQATLHNASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELR 405

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + F  P+ CP C S +  +      +  A  RC     C  Q  ER+ H  SR+  
Sbjct: 406 DGSEREFIMPTTCPECGSPLAPE-----KEGDADIRCPNARGCPGQLRERVFHVASRNGL 460

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IE LG +      +++     I    ++F L  R    T       G    +   L  +
Sbjct: 461 DIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVN 516

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           ++K +   L R + +L IRHVG   AR+LA  + S    A                L  V
Sbjct: 517 LDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAA----------STDQLAAV 566

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             VG  IA A+ E++    +   V+         +   +++V   +    +V TG+L   
Sbjct: 567 EGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGF 626

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R  A+E +   G   +  +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL   
Sbjct: 627 SRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLADG 686

Query: 722 NTT 724
             +
Sbjct: 687 PAS 689


>gi|148982028|ref|ZP_01816589.1| NAD-dependent DNA ligase LigA [Vibrionales bacterium SWAT-3]
 gi|145960667|gb|EDK26012.1| NAD-dependent DNA ligase LigA [Vibrionales bacterium SWAT-3]
          Length = 670

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 252/710 (35%), Positives = 384/710 (54%), Gaps = 47/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E  +  L  L + + YH   YY    P I D EYD L ++   I    P+L      + 
Sbjct: 2   KESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEEENPELVTV---DS 58

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG+      +VTH IP LSL+  ++ EDL  F  R+       +     F  EPK
Sbjct: 59  PSQRVGGQPLDGFTQVTHEIPMLSLDNAFSDEDLDAFNKRMSDRAPTANLK--TFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  +++ Y  G  V AA RGDG +GE+++  +R I +IP  L     PE IEVRGEV+
Sbjct: 117 LDGLAVSLLYVNGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IF 250
           + K  F  LN+  +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 177 MPKAGFDKLNEMALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVEGAEL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           +   Y+   +++  G P+    +Q ++   + +YY ++ + R  L Y+IDG+V KVD+ +
Sbjct: 237 STSHYQRFLQLKGWGLPMCPETKQLSSLEDVKAYYQDIMTRRDALAYEIDGVVIKVDDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEP+ +GG  ++N
Sbjct: 297 AQEVLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            ++VGD V+++RAG+VIP++V ++ + R   A+   F
Sbjct: 357 ATLHNADEIARL-----------GVKVGDSVIIRRAGDVIPQIVAVVQDRRPETAKDIVF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++GLG + 
Sbjct: 406 PDACPVCNSSVERVEGE------AVARCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKV 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L      S   I  +   G  S  N+  ++NK ++ +L
Sbjct: 460 IEQLVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVSALNKAKDTTL 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF++SLGIR VG   A +LA+++ + +      +            L+ V  +GDI+A 
Sbjct: 510 ARFLYSLGIREVGEATAMNLAQHFKTLELVQAATH----------EQLVEVSDIGDIVAS 559

Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            I  F+   +N   VE L++     P I     +    +E K +V TG+L ++ R +A+ 
Sbjct: 560 HITAFFSQEKNRAVVEQLIELGVNWPVIEDVPDDQELPLEGKVVVLTGSLSQLGRSEAKA 619

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +  LGA V+  +S+KTDI+  G+  GSKL KAQ LG++I  EE  + LL
Sbjct: 620 ALQALGAKVTGSVSKKTDILFAGEAAGSKLIKAQDLGIEIRTEEDLIALL 669


>gi|260550982|ref|ZP_05825187.1| DNA ligase [Acinetobacter sp. RUH2624]
 gi|260405930|gb|EEW99417.1| DNA ligase [Acinetobacter sp. RUH2624]
          Length = 691

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 254/720 (35%), Positives = 380/720 (52%), Gaps = 47/720 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I    +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L ++   
Sbjct: 14  MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQT--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E
Sbjct: 71  DSPTTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVE 127

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL     EI   +EVR
Sbjct: 128 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 187

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P         F+ +G+ +  
Sbjct: 188 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAGRPLAFYAYGIAQCE 247

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R +L  +IDG+V KV
Sbjct: 248 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPSLQVEIDGMVVKV 307

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 367

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+RVGD V V R G+VIPKV  +    R  +A+
Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 416

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 417 VVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 470

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++   +       ++  ADI+ L   ++     +  I   G+ SV NL D+I   +
Sbjct: 471 GDRWVESLLR----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 522

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +               +   L + P VGD
Sbjct: 523 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------NVEVLKKTPDVGD 572

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L+                 +  +  V TGTL+++ R +A
Sbjct: 573 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 631

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL 
Sbjct: 632 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKATKLGIPVMNETDFLSLMASYGQTLS 691


>gi|332653279|ref|ZP_08419024.1| DNA ligase, NAD-dependent [Ruminococcaceae bacterium D16]
 gi|332518425|gb|EGJ48028.1| DNA ligase, NAD-dependent [Ruminococcaceae bacterium D16]
          Length = 657

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 238/703 (33%), Positives = 368/703 (52%), Gaps = 50/703 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            +E+  L +E++  +  YY    P + D +YD   RR + +  A P+L     P+ P  +
Sbjct: 4   AQEILELRKELNQANFEYYVKDDPTMSDYDYDHKLRRLEELEGAHPELI---TPDSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG+   S  +VTH +P  SL+ +++ ++LR F  R+        +  + +++EPK+DG 
Sbjct: 61  VGGKALESFQQVTHRVPLESLQDVFDFDELRAFDQRVRGV-----EPKVSYSVEPKVDGL 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + Y+ G+FV  A RGDG  GEDV+  ++ + +IP  +    P  + VRGEVY+ K  
Sbjct: 116 SVALEYQDGQFVRGATRGDGLVGEDVTENLKTVKSIPLSIPDV-PGTLIVRGEVYMPKKV 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F ALN+E    G   +ANPRNAA+G LR+L+P     R L+  V  +            E
Sbjct: 175 FHALNEEREKRGEALFANPRNAAAGSLRQLDPKIAAQRRLDIAVFNIQWAENEDFHSHTE 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            +  +   GF V   V   +T    V     +   R   P+DIDG V KVD+ + ++ LG
Sbjct: 235 GINYLADKGFKVIPHV-ICSTIEEAVEQVKAIGEGRENYPFDIDGAVIKVDDLAQRQTLG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ PRW  ++K+  +   +RL DI IQ+GRTG+LTP A LEPV + G  +TNATLHN+
Sbjct: 294 STAKFPRWAAAYKYPPEVKPSRLTDIVIQVGRTGVLTPKAVLEPVRLAGTTVTNATLHNQ 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD VLV++AGE+IP+V+ +++ +R  DA P+ FP  CP 
Sbjct: 354 DFI-----------TEKDIRIGDTVLVRKAGEIIPEVLSVVMEKRPVDAVPYRFPDVCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + V RD +       A  RCTG   C AQ L  L HF SRDA +IEGLG   ++   K
Sbjct: 403 CGAPVARDED------GAHIRCTGA-ECPAQLLRNLAHFASRDAMDIEGLGIAVVENLVK 455

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  ++ P D++ L             +   G  S  NL  +I K ++  L R +F+
Sbjct: 456 ----AGLVKTPGDLYFLHEEDV------AELERMGKKSAQNLLSAIEKSKSQDLSRLLFA 505

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
            GIR VG +  + LA+ + S  N                  L +V  +G I AQ+IV+++
Sbjct: 506 FGIRQVGQKAGKILAQRFGSLDNLQAAT----------VEELTQVDDIGAITAQSIVDWF 555

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            +P++   +  L +         +K        K  V TGTL +  R +A + +   G  
Sbjct: 556 ASPQSQHLIARLKEAGVNMQAE-QKGEDQRFAGKTFVLTGTLDRFTRAEATKMIEDRGGK 614

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  +S+KT  ++ G+  GSKL KAQ+LGV ++ +E+FL L++
Sbjct: 615 AAGSVSKKTTYVVAGEAAGSKLRKAQELGVPVLTQEEFLALME 657


>gi|225873424|ref|YP_002754883.1| DNA ligase, NAD-dependent [Acidobacterium capsulatum ATCC 51196]
 gi|254781243|sp|C1F7S7|DNLJ_ACIC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225792636|gb|ACO32726.1| DNA ligase, NAD-dependent [Acidobacterium capsulatum ATCC 51196]
          Length = 677

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 250/717 (34%), Positives = 365/717 (50%), Gaps = 53/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S   A +++ SL + I +H+  YY   +P I D  +D L R+   +    P+L     P
Sbjct: 1   MSHASAAQQIESLRESIRHHEYLYYVQDQPEIDDLAFDELMRKLQRLEAEHPELI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+      KV HS P LSL+ + + E+LR +  R+     +  +  I +  E
Sbjct: 58  DSPTQRVGGKPKEGFAKVAHSRPMLSLDNVNSEEELRDWERRVREQAGQ--NAEIEYVCE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP------RVLSLNIPEII 185
            K+DG  + + Y  G+      RGDG  GEDV+  +R I ++P      ++    +P   
Sbjct: 116 YKLDGLSMALHYRDGQLARGLTRGDGEIGEDVTTNVRTIRSVPLSIADGKLQQAKMPANF 175

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVH-GL 243
           EVRGEV +    F  LN+E  A G  P ANPRNAA+G +R L P     R L+F+ +  L
Sbjct: 176 EVRGEVVMPFTAFEKLNEEREAQGLAPAANPRNAAAGTIRTLEPNIVAQRRLDFYAYFAL 235

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
            +  E     Q E L  +  LGF VN     A +   +V + N  +  RS L Y+IDG+V
Sbjct: 236 TEKGEDAFGEQEEALDALATLGFRVNQHRHAAKSIETVVEFVNRAEEHRSRLGYEIDGVV 295

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+   LQ++LG   R+PRW +++KFA +   T++ DI +Q+GRTG LTPVA L PV +
Sbjct: 296 VKVNSAVLQRRLGYTGRAPRWAVAYKFAARSGVTQVEDIQVQVGRTGKLTPVAWLAPVQV 355

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +T ATLHN D I+ L            +R+GD V ++R G+VIPKVV+++ +  HP
Sbjct: 356 GGTTVTRATLHNADEIERL-----------GLRIGDFVRIERGGDVIPKVVEVVDDAEHP 404

Query: 424 -DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              + F FP  CP C S VVR          A +RC     C A+  E L HF SR   N
Sbjct: 405 RGTKHFHFPHACPACGSEVVRTPGE------ADYRCVNT-DCPARLRESLLHFASRGVMN 457

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEG+G+  +            ++  +DI++L   Q  S      +   G  S T L   I
Sbjct: 458 IEGMGEAIVMQLLGR----GLVKTVSDIYSLTEEQLVS------LERMGKKSATALLGEI 507

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           +K R   L+R +F LGIR VG   A++LA+ Y S     Q               L RV 
Sbjct: 508 DKSRQAPLDRVLFGLGIRFVGERTAQALAEEYGSMDALMQA----------SREELERVN 557

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            VG  +++AI EF+  PRN   VE L +      G   K  S  +     V TGTL  + 
Sbjct: 558 DVGPRVSEAIREFFDEPRNRDLVERLREAGLRFTGEKRKKTSQ-LAGLTFVLTGTLPGLS 616

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R +A+  +   G  VS  +S+KT+ ++ G + GSKLEKA  LGV +++E   + +L+
Sbjct: 617 RDEAKGKIENAGGHVSGSVSKKTNYVVAGADAGSKLEKANSLGVPVIDEAALIKMLE 673


>gi|294649516|ref|ZP_06726937.1| NAD-dependent DNA ligase LigA [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824577|gb|EFF83359.1| NAD-dependent DNA ligase LigA [Acinetobacter haemolyticus ATCC
           19194]
          Length = 675

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 255/717 (35%), Positives = 377/717 (52%), Gaps = 47/717 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +      +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+  +++  
Sbjct: 1   MEHNSVIEQMRQLIQLIAKHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPECIQADT- 59

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P NK+GG+       VTH +P LSL  ++N E+L  F  RI        +  + + +E
Sbjct: 60  --PTNKVGGQALSKFESVTHVVPMLSLGNVFNQEELFAFARRIDERL---PNQKVQYEVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VLS     I   +EVR
Sbjct: 115 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSGQSQAIPQLLEVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247
           GEV + K  F  LN +  A G K +ANPRNAA+G LR+L+P         F+ +G+ +  
Sbjct: 175 GEVLMPKQGFEKLNADQAAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCQ 234

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ L  +   GF +        +   +   Y +++  R  L  +IDG+V KV
Sbjct: 235 PHHGLATMHDSLHWLTKFGFEIAERQYLCESIEEVQQRYEQIQQERPDLNVEIDGMVVKV 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T++ +ID Q+GRTG LTPVARL PV +GG 
Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLTPVFVGGV 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+RVGD V V R G+VIPKV  +    R  DA+
Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWAEFRPTDAE 403

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P+ CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 404 IVHLPTNCPVCDSPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++           ++  ADI+ L   ++    K+  I   G+ SV NL D+I   +
Sbjct: 458 GDRWVESLLH----LDLLKDVADIYHLHTHRE----KLLTIEKMGEKSVQNLIDAIEASK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI+ LGIR VG   AR LA  + +                 D  SL + P VGD
Sbjct: 510 KTTLARFIYGLGIRGVGETTARMLANTFQTLDALKAA----------DVESLKKTPDVGD 559

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+Q P NI  ++ L+                 +  +  V TGTL+ + R +A
Sbjct: 560 ITAEWIADFFQAPHNIEVLDRLMAAG-IHWDAPTAPTRQPLNGESWVVTGTLESMGRDEA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            + +  LGA VS  +S KT  ++ G+  GSKLEKAQ+L +++MNE++FL  L QY T
Sbjct: 619 TQRLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAQKLEIRVMNEQEFLDFLAQYQT 675


>gi|157363572|ref|YP_001470339.1| DNA ligase, NAD-dependent [Thermotoga lettingae TMO]
 gi|190359296|sp|A8F541|DNLJ_THELT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157314176|gb|ABV33275.1| DNA ligase, NAD-dependent [Thermotoga lettingae TMO]
          Length = 678

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 232/707 (32%), Positives = 374/707 (52%), Gaps = 45/707 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E  +K +  L +EI YH+  YY  + PII D EYD L +    +   +P+L     P+ 
Sbjct: 4   PEDIKKRIEKLREEIEYHNYRYYVLADPIISDEEYDRLMQELIELEKKYPELV---TPDS 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G ++      V HS P LSL+  ++   +R+F  R+ +  +K   ++I +  E K
Sbjct: 61  PSQRVGEKVLDEFRSVEHSEPMLSLDNTYDEAQIREFDKRVRKLLEK---DTIEYVTELK 117

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  + +RYE G+FV    RGDG  G+D++  ++ + +IP +L   +   +EVRGE+Y+
Sbjct: 118 IDGVSVALRYENGRFVLGLSRGDGTRGDDITENLKKVRSIPLILREPV--TVEVRGEIYM 175

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
              +F  LN+E   V    +ANPRNA +G LR+L+ +    R L+ F++ +        +
Sbjct: 176 PTEEFERLNEERKKVDGPLFANPRNATAGTLRQLDTSVIRNRRLDSFIYYVLSPERYGLQ 235

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q++ L+ ++ +GF VN   +       ++ Y+ +    +S L Y +DG+V KV+ F+ Q
Sbjct: 236 TQWDALKWLKKIGFKVNPYSQLCQNIDQVIDYWKQWIEKKSELSYWVDGVVVKVNHFNFQ 295

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG  +RSPRW I+ KF  ++A TR+L+I +Q+GRTGILTPVA LEP+ + G ++   +
Sbjct: 296 SILGSTSRSPRWAIAFKFPAQRAKTRVLNIIVQVGRTGILTPVAELEPIQLAGTVVKRVS 355

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DYI+            +DIR+GD+V V+++G +IP+VV +I +ER+   +    PS
Sbjct: 356 LHNFDYIE-----------EKDIRIGDQVYVEKSGGIIPQVVSVIADERNGSEKKIEIPS 404

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C  +V +  +        A RC     C A+    L+ FVSR A NI+GLG++ +D
Sbjct: 405 KCPVCSGKVGKIDSE-----DVALRCLNP-HCPAKLKRALETFVSRGALNIKGLGEKLID 458

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
               S      ++  ADIF L   + +         G G   + NL   I + +   L +
Sbjct: 459 RLVDS----GLVKDIADIFYLTPFELSQLGS-----GIGQKMIANLLAQIEQAKKTPLHK 509

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +  LGI  VG + AR L + + S +                   L ++  +G  IA+ I
Sbjct: 510 ILTGLGIPLVGEKTARILTQKFRSIKRLLSS----------SVDELTQIEGIGIEIAKNI 559

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            E++ N +    +  L K       +     S  + N     TGTL+   R + ++ V  
Sbjct: 560 REYFDNEKTRQIIGKLEKAGLNLEEKEAVVQSKILSNLTFAVTGTLKNFTRDQIKQLVQS 619

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           LG  V+  +S+ TD +IVGDNPGSKL KA+ LGVK++ E++FL  ++
Sbjct: 620 LGGQVTDSVSKSTDYVIVGDNPGSKLTKARNLGVKLLTEDEFLQFVK 666


>gi|226953496|ref|ZP_03823960.1| DNA ligase [Acinetobacter sp. ATCC 27244]
 gi|226835781|gb|EEH68164.1| DNA ligase [Acinetobacter sp. ATCC 27244]
          Length = 675

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 254/717 (35%), Positives = 377/717 (52%), Gaps = 47/717 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +      +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+  +++  
Sbjct: 1   MEHNSVIEQMRQLIQLIAKHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPECIQADT- 59

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P NK+GG+       VTH +P LSL  ++N E+L  F  RI        +  + + +E
Sbjct: 60  --PTNKVGGQALSKFESVTHVVPMLSLGNVFNQEELFAFARRIDERL---PNQKVQYEVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VLS     I   +EVR
Sbjct: 115 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSGQSQAIPQLLEVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247
           GEV + K  F  LN +  A G K +ANPRNAA+G LR+L+P         F+ +G+ +  
Sbjct: 175 GEVLMPKQGFEKLNADQAAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCQ 234

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ L  +   GF +        +   +   Y +++  R  L  +IDG+V KV
Sbjct: 235 PHHGLATMHDSLHWLTKFGFEIAERQYLCESIEEVQQRYEQIQQERPDLNVEIDGMVVKV 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T++ +ID Q+GRTG LTPVARL PV +GG 
Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLTPVFVGGV 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+RVGD V V R G+VIPKV  +    R  DA+
Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWAEFRPTDAE 403

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P+ CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 404 IVHLPTNCPVCDSPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++           ++  ADI+ L   ++    K+  I   G+ SV NL D+I+  +
Sbjct: 458 GDRWVESLLH----LDLLKDVADIYHLHTHRE----KLLTIEKMGEKSVQNLIDAIDASK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI+ LGIR VG   AR LA  + +                 D  SL + P VGD
Sbjct: 510 KTTLARFIYGLGIRGVGETTARMLANTFQTLDALKAA----------DVESLKKTPDVGD 559

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+Q P NI  ++ L+                 +  +  V TGTL+ + R +A
Sbjct: 560 ITAEWIADFFQAPHNIEVLDRLMAAG-IHWDAPTAPTRQPLNGESWVVTGTLESMGRDEA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            + +  LGA VS  +S KT  ++ G+  GSKLEKAQ+L +++MNE++FL  L QY  
Sbjct: 619 TQRLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAQKLEIRVMNEQEFLDFLAQYQA 675


>gi|126640855|ref|YP_001083839.1| DNA ligase [Acinetobacter baumannii ATCC 17978]
 gi|322506977|gb|ADX02431.1| DNA ligase [Acinetobacter baumannii 1656-2]
 gi|323516844|gb|ADX91225.1| DNA ligase, NAD-dependent [Acinetobacter baumannii TCDC-AB0715]
          Length = 669

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 252/711 (35%), Positives = 375/711 (52%), Gaps = 47/711 (6%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+L ++   + P  K+GG
Sbjct: 1   MRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQA---DSPTTKVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +       VTH +P LSL  ++N EDL  F  R+        +  + + +E K+DG  I+
Sbjct: 58  QALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVELKLDGLAIS 114

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVRGEVYISKND 197
           + YE G  V    RGDG +GED++  ++ I  +P+VL     EI   +EVRGEV + K+ 
Sbjct: 115 LWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSG 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF-AKGQY 255
           F  LN +  A G K +ANPRNAA+G LR+L+P         F+ +G+ +          +
Sbjct: 175 FEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMH 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KVD+   Q+QL
Sbjct: 235 DSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQQL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG  ++N TLHN
Sbjct: 295 GFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
              I  L           D+R+GD V V R G+VIPKV  +    R  +A+    P  CP
Sbjct: 355 IGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCP 403

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGLG + ++   
Sbjct: 404 VCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLL 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       ++  ADI+ L   ++     +  I   G+ SV NL D+I   +  +L RFI+
Sbjct: 458 R----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASKKTTLARFIY 509

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   AR LA  + + +               +  +L + P VGDI A+ I +F
Sbjct: 510 ALGIRGVGETTARMLANTFQTLEALKAA----------NVEALKKTPDVGDITAEWIADF 559

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +  P NI  ++ L+                 +  +  V TGTL+++ R +A + +  LGA
Sbjct: 560 FLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGA 618

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL 
Sbjct: 619 RVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTLS 669


>gi|147678862|ref|YP_001213077.1| NAD-dependent DNA ligase [Pelotomaculum thermopropionicum SI]
 gi|190359268|sp|A5CZ68|DNLJ_PELTS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146274959|dbj|BAF60708.1| NAD-dependent DNA ligase [Pelotomaculum thermopropionicum SI]
          Length = 679

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 247/702 (35%), Positives = 368/702 (52%), Gaps = 57/702 (8%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           I +H+  YY   +P I D++YD L R  + +   FP L     P  P  ++GG       
Sbjct: 19  IEHHNYLYYVLDRPAITDAQYDRLMRELERLEKQFPALV---TPYSPTQRVGGRPREGFA 75

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
            V H  P LSL   ++  +LR F  R+ +         + + +E KIDG  +++ YE G 
Sbjct: 76  AVRHLSPMLSLANAFDERELRDFDRRVRQAL---PGEQVRYVVELKIDGLAVSLYYENGI 132

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V  A RGDG +GED++  ++ + ++P  L   +P + EVRGE ++ K  F  LN+    
Sbjct: 133 LVRGATRGDGDTGEDITENLKTVRSVPLRLRRPVPAL-EVRGEAFMPKEAFSRLNEGREE 191

Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF----------AKGQYE 256
            G   +ANPRNAA+G LR+L+P    +R L+ FV+G G                 +   E
Sbjct: 192 AGETLFANPRNAAAGSLRQLDPKITASRQLDLFVYGTGYGEWGRAVFPDGERTAPQEHAE 251

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+ ++ LGF VN   R  +    +V Y    ++ R  LPY +DGLV KV+  + Q++LG
Sbjct: 252 VLELLKELGFKVNPEYRLFDRLDELVEYCLGWQARRFELPYAVDGLVIKVNSLAQQERLG 311

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW +++KF  +QA T++ DI +++GRTG+LTP A LEPV + G  ++ ATLHNE
Sbjct: 312 ATMKSPRWAVAYKFPPEQAVTKVKDIFVRVGRTGVLTPTAELEPVRLAGTTVSRATLHNE 371

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+GD+VLV++AG++IP+VV ++  ER    + ++ P  CP 
Sbjct: 372 DIIR-----------EKDIRIGDKVLVQKAGDIIPEVVAVLKEERTGAEKAWAMPGRCPS 420

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + VVR          AA RCT   AC A+  E L HF SRDA +I GLG   +     
Sbjct: 421 CGAGVVRAEGE------AAVRCTNM-ACPARLQEGLIHFASRDAMDIAGLGPAVIAQLVS 473

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +  PAD++ L+            +   G  S  NL ++I   +  SL R IF+
Sbjct: 474 ----AGLVGDPADLYALRYEDLV------PLERLGPKSARNLLEAIEASKGRSLARLIFA 523

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG   A+ LA +Y S                     L+ +P +G  IA +IVEF+
Sbjct: 524 LGIRHVGERAAKILANHYQSLSGLMSATQ----------EELVNIPEIGPKIAASIVEFF 573

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            N +N   ++ L+K    ++           +  K  V TG L+   R +AQE +  LG 
Sbjct: 574 SNEQNRKVIDKLVKAGVNTLTEKVIREGGGPLNGKVFVLTGVLKDFSRQQAQELIESLGG 633

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +S+ +SR TD ++ G+NPGSK EKA  LGVKI++E +F  L
Sbjct: 634 RISSSVSRNTDFVVAGENPGSKYEKALTLGVKILDENEFREL 675


>gi|16077730|ref|NP_388544.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221308499|ref|ZP_03590346.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221312822|ref|ZP_03594627.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221317746|ref|ZP_03599040.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221322025|ref|ZP_03603319.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|7673987|sp|O31498|DNLJ_BACSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|2632976|emb|CAB12482.1| DNA ligase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 668

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 248/715 (34%), Positives = 404/715 (56%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A++    L + I+ +   YY   +P + D+EYD L +   AI    PDL     P
Sbjct: 1   MDKETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDL---RTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  +  KVTH  P LSL   +N +DLR F  R+ +       + + + +E
Sbjct: 58  DSPTQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRVRQSVG----DDVAYNVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +  N    IEVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKM--NRELSIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F ALN+E I    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+ 
Sbjct: 172 YMPKRSFEALNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q + L  +  LGF  N   ++  +   +++  +E+++ R+ LPY+IDG+V KVD   
Sbjct: 232 VETQSQGLDFLDELGFKTNQERKKCGSIEEVITLIDELQAKRADLPYEIDGIVIKVDSLD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ 
Sbjct: 292 QQEELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED IK            +DIR+ D+V+VK+AG++IP+VV+++V++R  + + FS 
Sbjct: 352 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLVDQRTGEEKEFSM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTECPECGSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       +R  AD++ L + +         +   G+ S  NL  SI K +  SL
Sbjct: 454 ITQLFEEN----LVRNVADLYKLTKERVI------QLERMGEKSTENLISSIQKSKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA ++ S +N  +               L+ V  +G+ +A 
Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASK----------EELLAVDEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A++ ++     +  +  L +    ++ +       ++  S    K +V TG L+++ R++
Sbjct: 554 AVITYFHKEEMLELLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+ TD++I G+  GSKL KAQ+L +++ NEEQ +  L++
Sbjct: 614 AKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEEQLMGELKK 668


>gi|291483102|dbj|BAI84177.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. natto
           BEST195]
          Length = 668

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 248/715 (34%), Positives = 402/715 (56%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A++    L + I+ +   YY   +P + D+EYD L +   AI    PDL     P
Sbjct: 1   MDKETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDL---RTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  +  KVTH  P LSL   +N +DLR F  R+ +       + + + +E
Sbjct: 58  DSPTQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRVRQAVG----DDVAYNVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +  N    IEVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKM--NRELSIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F ALN+E I    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+ 
Sbjct: 172 YMPKRSFEALNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q + L  +  LGF  N   ++      +++  +E+++ R+ LPY+IDG+V KVD   
Sbjct: 232 VETQSQGLDFLDELGFKTNQERKKCGDIEEVITLIDELQAKRADLPYEIDGIVIKVDSLD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ 
Sbjct: 292 QQEELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED IK            +DIR+ D+V+VK+AG++IP+VV+++V +R  + + FS 
Sbjct: 352 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLVEQRTGEEKEFSM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTECPECGSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       +R  AD++ L + +         +   G+ S  NL  SI K +  SL
Sbjct: 454 ITQLFEEN----LVRNVADLYKLTKERVI------QLERMGEKSTENLISSIQKSKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA ++ S +N  +               L+ V  +G+ +A 
Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASK----------EELLAVDEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A++ ++     +  +  L +    ++ +       ++  S    K +V TG L+++ R++
Sbjct: 554 AVITYFHKEEMLELLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+ TD++I G+  GSKL KAQ+L +++ NEEQ +  L++
Sbjct: 614 AKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEEQLMGELKK 668


>gi|87119444|ref|ZP_01075341.1| NAD-dependent DNA ligase [Marinomonas sp. MED121]
 gi|86164920|gb|EAQ66188.1| NAD-dependent DNA ligase [Marinomonas sp. MED121]
          Length = 676

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 255/718 (35%), Positives = 395/718 (55%), Gaps = 47/718 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S +    ++S L   ++ +   Y+   +P + D+EYD   R   A+    PDL ++   
Sbjct: 1   MS-DSITAQISELVNRLNDYSYAYHVKDEPKVSDAEYDLDYRTLIALEKQAPDLIQA--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G + +     V H++P LSL+  ++ E L +F  R+++        ++ +  E
Sbjct: 57  DSPTQRVGEKPDSGFQTVAHTVPMLSLDNAFSDEQLEEFEQRLFKLIGA---QALSYCCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  I++RYE G  V    RGDG +GED+++ I+ I +IP    +   P ++EVRGE
Sbjct: 114 PKLDGLAISLRYEDGILVRGLTRGDGVAGEDITSNIKTIGSIPLKLRTQTPPPVLEVRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-E 248
           +Y+ K  F ALN +    G K + NPRNAA+G LR+L+P+   +R L    + +G T   
Sbjct: 174 IYMPKAGFEALNKQAEEKGEKAFVNPRNAAAGSLRQLDPSITASRPLVLCAYSIGHTEGW 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           I     Y+ L  M   GF  N  + + ++  G V YY  +  +R  L YDIDG+VYKVD 
Sbjct: 234 IQPDSHYDSLTLMSQWGFKTNPLMEKVSSIKGCVDYYQRLTELRPDLTYDIDGIVYKVDS 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG  AR+PRW I+ KF  ++A T++LD+D Q+GRTG +TPVARL+PV +GG  +
Sbjct: 294 LALQQELGFIARAPRWAIARKFPAEEAITQILDVDFQVGRTGAITPVARLDPVFVGGVTV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN+D I  L            +RV D V ++RAG+VIP+VV +I ++R  D+   
Sbjct: 354 SNATLHNKDEINRL-----------GVRVKDFVSIRRAGDVIPQVVKVIHDKRGEDSAEV 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CPICQS + +          A  RC+GGL C AQ+ E LKHFVSR A +I+GLG 
Sbjct: 403 IFPEVCPICQSELEQVTGE------AVIRCSGGLVCGAQRKEALKHFVSRKAMDIDGLGD 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++     E     I+ P DI+ L +++Q     +  +   G+ SV  L  SI   +  
Sbjct: 457 KLVEQLVDLE----FIKTPVDIYHLFKKKQ----ALLELERMGEKSVEKLLTSIEASKQT 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              RFI++LGIR VG   AR+L +++ +     +           +  SL++V  VG I+
Sbjct: 509 EFHRFIYALGIREVGEATARTLTRHFKTLDKIIEA----------NTESLVKVDDVGPIV 558

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKA 666
           AQ +  F+    N   V ALL        +   +   +  +     V TGTL  ++R + 
Sbjct: 559 AQHLRRFFFKDSNKEMVMALLDAGLYWQEKEAASGETAQPLLGLTYVVTGTLTALKRDEV 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           ++ +  LGA VS  +S KT  +I G+  GSKL KAQ LG++I++E   L LL+++   
Sbjct: 619 KDKLISLGAKVSGSVSAKTHCLIAGEKAGSKLTKAQDLGIQILDEAGMLALLEEHGVA 676


>gi|56751245|ref|YP_171946.1| NAD-dependent DNA ligase LigA [Synechococcus elongatus PCC 6301]
 gi|81299088|ref|YP_399296.1| NAD-dependent DNA ligase LigA [Synechococcus elongatus PCC 7942]
 gi|81596046|sp|Q5N2P4|DNLJ_SYNP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123728245|sp|Q31RL0|DNLJ_SYNE7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56686204|dbj|BAD79426.1| DNA ligase [Synechococcus elongatus PCC 6301]
 gi|81167969|gb|ABB56309.1| DNA ligase, NAD-dependent [Synechococcus elongatus PCC 7942]
          Length = 679

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 229/712 (32%), Positives = 343/712 (48%), Gaps = 44/712 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +     +  S L Q +      YY   +P++ D+ YD L R    +    P L     P+
Sbjct: 9   TTTAIAQRASELRQLLQQASYAYYVLDQPVMEDAVYDRLYRELQDLEQQHPSLI---TPD 65

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G +       V H IP  SLE  ++ E+LR +  R  +           +  E 
Sbjct: 66  SPTQRVGEQPATGFESVQHRIPLYSLENAFDAEELRSWDQRWRK-LAPDVPADAGYVCEL 124

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEV 191
           KIDG  I + YE G  V  A RGDG  GE+++A +R I +IP    +   PE +EVRGE 
Sbjct: 125 KIDGAAIALSYENGLLVRGATRGDGTRGEEITANLRTIKSIPLRLQTDQPPEWLEVRGEA 184

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           ++S   F  LN E    G   +ANPRNAA+G LR+L+P     R L+FF + +   ++  
Sbjct: 185 FLSLTRFKQLNTEREKHGEALFANPRNAAAGTLRQLDPRIVAERQLDFFAYSIQGPNDWA 244

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q   L  ++ LGF V    +   T   +  Y+++  + R  LPY  DG+V K+    
Sbjct: 245 NLDQAASLDCLQSLGFRVEPHRQTCPTLAEVEQYFSDWDARRRDLPYLTDGVVVKLQSRR 304

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG   + PRW I+ K+   +A T+L  + +Q+GRTG LTPVA   PV + G  ++ 
Sbjct: 305 LQDELGFTQKFPRWAIALKYPADEAPTQLQHVTVQVGRTGALTPVAEFSPVALAGTTVSR 364

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D ++ L           D+ +GD ++V++AGE+IP+VV ++ + R  DA+P   
Sbjct: 365 ATLHNADRLREL-----------DLHIGDTIVVRKAGEIIPEVVRVLTDLRPADAKPVVL 413

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C   V R          A  RC     C A     L H+ SRDA +IEGLG++ 
Sbjct: 414 PEKCPECGQPVQRPEEE------AVTRCVNS-TCPAIVRGALTHWASRDALDIEGLGEKL 466

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D           +   AD++ L          + ++  FG+ S  NL  +I K R    
Sbjct: 467 VDQLVSK----GLVNAIADLYRLDA------PLLASLERFGEKSAQNLVQAIAKSRQQPW 516

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R ++ LGIRHVG+  A++LA  + S +  AQ               L  V  +G  IA 
Sbjct: 517 SRVLYGLGIRHVGSVNAKNLAATFTSAEALAQATP----------DELAAVYGIGSEIAD 566

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           A+ +++    N   + AL +      G      S  +  +  V TGTL  + R++A+  +
Sbjct: 567 AVHQWFTVATNQNLIAALEQAGLQLHGEAASPRSQALAGQTFVLTGTLPTLSRNEAKALI 626

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
              G  VS  +S+KT  ++ G+  GSKLEKA  L +  +NE Q L LL Q  
Sbjct: 627 EAAGGKVSGSVSKKTSYVVAGEEAGSKLEKAIALNIPQLNETQLLDLLAQAE 678


>gi|197121145|ref|YP_002133096.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. K]
 gi|254781542|sp|B4UDH6|DNLJ_ANASK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|196170994|gb|ACG71967.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. K]
          Length = 687

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 235/719 (32%), Positives = 364/719 (50%), Gaps = 42/719 (5%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A      L   I   D  YY   +P++ D+EYD L     A+    P+L  +   
Sbjct: 1   MKKADAPARARELRDRIRAADHAYYVLDQPLLADAEYDRLMHELQALEADHPELVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G  +    +V H  P LSL  + + ++L++F  R+ R     D   + + +E
Sbjct: 58  DSPTQRVSGAPSERFERVVHREPMLSLGNVQSDDELQEFDARVRRLLGLPDGEPVGYVVE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRA------IPTIPRVLSLNIPEII 185
           PK+DG  + + Y  G F   + RGDG +GEDV+A +R          +P  L    P  +
Sbjct: 118 PKLDGLAVELVYRDGAFTSGSTRGDGVNGEDVTANLRVVGGLGANRGVPHALEGRPPPRV 177

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEV + K  F A+N +++  G  P+ANPRNAA+G LR+L+      R L+F  +   
Sbjct: 178 EVRGEVLLFKEHFEAMNRQLVRAGEAPFANPRNAAAGTLRQLDWRVTARRPLSFIAYEAL 237

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              +   +  +E L+++   GF  N   R+      +++Y + M   R  LPYD DG+V 
Sbjct: 238 LPGDDPWRTHWEKLEELAAWGFETNAENRRCRGLAEVLAYRDRMAERRFELPYDTDGIVV 297

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD+   +++LG  ++ PRW ++ K+  ++ +TR+  I   +GRTG+LTPV   +PV + 
Sbjct: 298 KVDDLDWRRRLGAASKFPRWAVAFKYPPQEEATRIRRIWASVGRTGVLTPVVDFDPVRLS 357

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           GA++  ATLHNED ++            +DI  GD VLV+RAGEVIP+VV  +   R   
Sbjct: 358 GAMVARATLHNEDEMRR-----------KDILEGDWVLVRRAGEVIPEVVKPLPERRTGA 406

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            QPF FP+ CP+C +RVVR+   K       +RCTG  AC AQ + RL HF  R A +IE
Sbjct: 407 EQPFRFPAECPVCGARVVREEGEK------VYRCTGA-ACPAQLVGRLCHFAQRRALDIE 459

Query: 485 GLGKQQLDFFFKS---EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           GLG++      +    +D A    +P +++     +              + S  N+  +
Sbjct: 460 GLGEKLAAGLVERGQVKDFADLYAVPFEVWQQLFSRPRKEQDAGAARELPEKSAQNMVAA 519

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           + + R  +L RF+F+LGI  VG   A +LA+++                   D  +L  V
Sbjct: 520 LERSRKTTLRRFLFALGIPQVGEATAATLARHFGGLARVMDA----------DEEALKGV 569

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             VG   A  I  + Q P+N   VE LL           +        K +V TG L  +
Sbjct: 570 RDVGPETAAEIRAWTQEPQNRRVVERLLAAGVTPEAEVVEAR-GPFAGKTVVLTGGLSTM 628

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            R  A+  + + G  VS  +SRKTD+++ G++ GSKLEKA+ LGV+I  EE+F+ LL++
Sbjct: 629 SRDDAKAEIERRGGRVSGSVSRKTDLVVAGEDAGSKLEKARSLGVRIAGEEEFVRLLKE 687


>gi|108759370|ref|YP_633776.1| NAD-dependent DNA ligase [Myxococcus xanthus DK 1622]
 gi|123074067|sp|Q1D0P7|DNLJ_MYXXD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|108463250|gb|ABF88435.1| DNA ligase, NAD-dependent [Myxococcus xanthus DK 1622]
          Length = 672

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 250/713 (35%), Positives = 389/713 (54%), Gaps = 52/713 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
             ++A      L +E+++H+  YY    P + D++YD L R    +    P L   + P+
Sbjct: 3   DFQKAAARARELHRELAHHNYRYYVLDSPEVSDAQYDKLMRELQDLEAKHPSL---QTPD 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG       +V H  P +SL  I+  + L +F  RI +         I +  EP
Sbjct: 60  SPTQRVGGAAAEEFGEVVHRAPMISLANIFEDQGLTEFDERIRKLVGLPG---IAYVCEP 116

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVR 188
           K+DG  I +RYEKG FV  A RGDG +GEDV++ +R I ++P  L        P+++EVR
Sbjct: 117 KLDGLAIALRYEKGAFVQGATRGDGTTGEDVTSNLRTIRSLPMSLFPQDDVKVPDVLEVR 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN--PTDITRYLNFFVHGLGKT 246
           GEV+I K DF  LN++    G   +ANPRNAA+G LR+L+   T       F    +   
Sbjct: 177 GEVFIRKKDFQKLNEKREEEGEPLFANPRNAAAGSLRQLDPRMTAARPLSVFLYECVPGE 236

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K   E L+ ++ LG P+N   R+A    G+   Y+     R  LP+++DG+V KV
Sbjct: 237 GVPVFKTHIEKLEYLKTLGLPINQ-YRRAEGLEGVRQAYDASLKGRHELPFEVDGMVVKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   +K+LG+ ++SPRW +++KF  ++ ST ++DI IQ+GRTG LTPVA L+PV +GG 
Sbjct: 296 DDEDQRKRLGQVSKSPRWAVAYKFPPEEESTEVMDIGIQVGRTGALTPVAHLKPVKVGGV 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHNED ++            +D+R GD V V+RAG+VIP++V +++++R  D+ 
Sbjct: 356 TVARATLHNEDELRR-----------KDVRKGDTVFVRRAGDVIPEIVSVVLSKRPADSA 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           PF FP  CP+C +   +D +       A  RCTG  +C AQ +E+++HF SR A +IEGL
Sbjct: 405 PFEFPKHCPVCDAVATKDED------GAIIRCTGA-SCPAQLVEKIRHFASRLAMDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +       +      ++  AD++ L +    +      +   GD S  NL  S+ + +
Sbjct: 458 GDKLAAQLVST----GRVKAFADLYALTKEDLLT------LERMGDKSADNLIASLERSK 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF++SLGIRHVG   A++LA+ +   +   +               + RV  VG 
Sbjct: 508 QTTQRRFLYSLGIRHVGDATAKALAEAFPRSEMLFEA----------SLEDISRVKDVGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I+AQ I  F+Q P+N  A+ ALL          +         K +V TG +  + R +A
Sbjct: 558 IMAQVIHTFFQEPQNQEAIRALLAAGV-QPAAPQVATGGPFVGKSVVLTGAMTGMTREQA 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E V + G  V+  +SRKTD ++ G++ GSKL+KAQ+LGV+I++E+ FL +LQ
Sbjct: 617 KEEVERRGGKVAGSVSRKTDFVVAGEDAGSKLKKAQELGVRILDEQAFLQMLQ 669


>gi|321314391|ref|YP_004206678.1| NAD-dependent DNA ligase LigA [Bacillus subtilis BSn5]
 gi|320020665|gb|ADV95651.1| NAD-dependent DNA ligase LigA [Bacillus subtilis BSn5]
          Length = 668

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 248/715 (34%), Positives = 403/715 (56%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A++    L + I+ +   YY   +P + D+EYD L +   AI    PDL     P
Sbjct: 1   MDKETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDL---RTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  +  KVTH  P LSL   +N +DLR F  R+ +       + + + +E
Sbjct: 58  DSPTQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRVRQSVG----DDVAYNVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +  N    IEVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKM--NRELSIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F ALN+E I    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+ 
Sbjct: 172 YMPKRSFEALNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q + L  +  LGF  N   ++  +   +++  +E+++ R+ LPY+IDG+V KVD   
Sbjct: 232 VETQSQGLDFLDELGFKTNQERKKCGSIEEVITLIDELQAKRADLPYEIDGIVIKVDSLD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ 
Sbjct: 292 QQEELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED IK            +DIR+ D+V+VK+AG++IP+VV+++V +R  + + FS 
Sbjct: 352 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLVEQRTGEEKEFSM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTECPECGSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       +R  AD++ L + +         +   G+ S  NL  SI K +  SL
Sbjct: 454 ITQLFEEN----LVRNVADLYKLTKERVI------QLERMGEKSTENLISSIQKSKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA ++ S +N  +               L+ V  +G+ +A 
Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASK----------EELLAVDEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A++ ++     +  +  L +    ++ +       ++  S    K +V TG L+++ R++
Sbjct: 554 AVITYFHKEEMLELLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+ TD++I G+  GSKL KAQ+L +++ NEEQ +  L++
Sbjct: 614 AKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEEQLMGELKK 668


>gi|326334401|ref|ZP_08200613.1| NAD-dependent DNA ligase LigA [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325693368|gb|EGD35295.1| NAD-dependent DNA ligase LigA [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 670

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 221/711 (31%), Positives = 373/711 (52%), Gaps = 46/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +   +++ +L  E++ H+  YY    P I D E+D   +    + H +P      DPN P
Sbjct: 3   DSVLQQIETLRTELNEHNYNYYVLDSPTISDYEFDQKLKHLQELEHQYPQYK---DPNSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE+  +   + H     SL+  ++ E+L+++  R+ +   K   + I F  E K 
Sbjct: 60  TVRVGGEITKNFPTIVHEFRMYSLDNSYSKEELKEWEKRVLKLLGK---DKISFVCELKY 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I + Y+ GK V A  RGDG  G++++A +R I ++P  L  + PE   +RGE+ I 
Sbjct: 117 DGASIDLTYDAGKLVQAVTRGDGIQGDEITANVRTIRSVPLTLKGDYPEYFHIRGEIIIL 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
           K  F  +N++ IA G  PY NPRN ASG L+  + T++ +     +      + +  + Q
Sbjct: 177 KEGFKRMNEQRIAEGEDPYMNPRNTASGSLKLQDTTEVAKRPLDCLLYYVVGNNLPIQTQ 236

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E L+K R  GF V    +  ++   ++ + N   + R  LPY+ DG+V KV++F  Q++
Sbjct: 237 FEGLRKAREWGFKVPTQSKLCHSTQEVMDFINYWDTHRHDLPYETDGVVIKVNDFQAQQE 296

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++SPRW I++KF  ++ +T L  I  Q+GRTG +TPVA L PV + G ++  A+LH
Sbjct: 297 LGYTSKSPRWAIAYKFKAEEVTTTLESISYQVGRTGAITPVANLTPVLLAGTIVKRASLH 356

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L           D+ +GD+V V++ GE+IPK+  +  +ER  +A   +F + C
Sbjct: 357 NADQIAKL-----------DLHLGDQVFVEKGGEIIPKITGVKTDERKANATTVTFITHC 405

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +VR+         A H C     C  Q   R++H++SR A +IEGLG + ++  
Sbjct: 406 PECGTALVRNEGE------AQHYCPNAYGCPPQITGRIQHYISRKAMDIEGLGSETVELM 459

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+    A  I   AD++ L+  Q  +      +   G+ S  N+ + I K + I  +R +
Sbjct: 460 FR----AGLIHNYADLYELKVEQIQN------LERMGERSAKNIIEGIEKSKEIPFDRVL 509

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+  A+ Y + + F              +  L ++  +GD IAQ+++E
Sbjct: 510 FALGIRMVGETVAKKFARIYKTLEAFRSAT----------YEQLTQIDEIGDRIAQSVIE 559

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           F+ + RN   +E L         +   N  +S  ++ K LV +G   +  R + +  +  
Sbjct: 560 FFADDRNKVILERLQSYGVQFALKETANFPLSDILKGKTLVVSGVFARYSRDELKALIEN 619

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            G  V + +S KT  ++ G+N G SKLEKA QLG+ I++E++F  ++ +  
Sbjct: 620 HGGKVGSSISSKTSYVVAGENMGPSKLEKATQLGIPILSEKEFEQMIGEKK 670


>gi|260911472|ref|ZP_05918061.1| DNA ligase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634401|gb|EEX52502.1| DNA ligase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 666

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 225/711 (31%), Positives = 359/711 (50%), Gaps = 49/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  +  +  L  ++ +H+  YY  + P + D E+D L R    +    P+     DPN 
Sbjct: 1   MEDIK-RIEELRNQLHHHNYLYYVQNSPTLSDQEFDHLMRELQDLEAKHPE---VYDPNS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +++    +V H  P LSL   +N +++  +   + +     D        E K
Sbjct: 57  PTQRVGSDLSTGFTQVRHRYPMLSLANTYNEQEVASWYENVRKDL---DGQPFEVCCELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
            DG  I++ YE+G+ V A  RGDG  G+DV+A +R I  IP VL     P+  E+RGE+ 
Sbjct: 114 YDGLSISLTYEQGRLVRAVTRGDGEQGDDVTANVRTIRAIPLVLPGTGYPDEFEIRGEIL 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +    F  LN E        +ANPRNAASG L+ L+P  + +              + + 
Sbjct: 174 MPWKVFEQLNAEREKAEEPLFANPRNAASGTLKSLDPKLVAKRKLDAYLYYLLGDNVPSD 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
           G YE L+     GF V+ G+R+AN+   I  + N   + R  LP   DG+V KV+    Q
Sbjct: 234 GHYENLKTAEAWGFKVSEGIRKANSLEQIYEFINHWDTARHNLPVATDGIVLKVNSLRQQ 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  A+SPRW I++KF  ++  TRL ++  Q+GRTG +TPVA +EPV + G  +  AT
Sbjct: 294 QQLGFTAKSPRWAIAYKFKAERVCTRLNEVTFQVGRTGAVTPVANMEPVLLAGTTVKRAT 353

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L+NED+I+ L           D+ +GD V V++ GE+IPK+V + V+ R PD QP  F S
Sbjct: 354 LNNEDFIRSL-----------DLHIGDNVFVEKGGEIIPKIVGVDVSHRSPDLQPVHFIS 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S +VR          AA+ C     C  Q   R++HF++R A NI+ +G + +D
Sbjct: 403 NCPECGSPLVRYAGE------AAYYCPNDTGCPPQIKGRIEHFIARKAMNIDSIGPETID 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            +F+       +R  AD++ ++  Q           G    S   +   I    +   ER
Sbjct: 457 DYFRK----GIVRNVADLYEIRTEQING-------DGTRQKSAQKIVKGIQDSVSTPFER 505

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F+LGIR VG   A+ LAK++ S                     L+ V  VG +IA+++
Sbjct: 506 VLFALGIRFVGETTAKLLAKHFKSIDALMTATP----------EQLVEVEGVGTVIAESV 555

Query: 613 VEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           V F+ +  N+  +E L +           ++  S ++  K +V +G  ++  R + +  +
Sbjct: 556 VRFFHDEVNLNIIERLRQHGLQMALSADQQQIASDKLAGKNIVISGVFERHSRDEYKAMI 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
              G    + +S KT  I+ G N G SK++KAQQLG+++++E+ FL +L+Q
Sbjct: 616 ESNGGKNVSSISNKTSFILAGANMGPSKMQKAQQLGIEMIDEDTFLNMLEQ 666


>gi|215405001|ref|ZP_03417182.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987]
 gi|289746820|ref|ZP_06506198.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987]
 gi|289687348|gb|EFD54836.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987]
          Length = 691

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 219/723 (30%), Positives = 352/723 (48%), Gaps = 43/723 (5%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    +  +  ++  +L +E+  H   YY    PII D+E+D L RR +A+    P+L  
Sbjct: 4   PDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL-- 61

Query: 68  SEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              P+ P   +GG         V H    LSL+  +  ++L  +  RI+           
Sbjct: 62  -RTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH--- 117

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIP 182
            +  E KIDG  +++ Y +G+   A+ RGDG +GEDV+   R I  +P  L       +P
Sbjct: 118 -YLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVP 176

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
           E++EVRGEV+   +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    H
Sbjct: 177 EVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICH 236

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           GLG          ++    +R  G PV+     A    G+    +     R  + ++IDG
Sbjct: 237 GLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVDE +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV
Sbjct: 297 VVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPV 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ +  ATLHN   IK            + + +GD V++++AG+VIP+V+  +V  R
Sbjct: 357 KVAGSTVGQATLHNASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELR 405

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + F  P+ CP C+S +  +      +  A  RC     C  Q  ER+ H  SR+  
Sbjct: 406 DGSEREFIMPTTCPECRSPLAPE-----KEGDADIRCPNARGCPGQLRERVFHVASRNGL 460

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IE LG +      +++     I    ++F L  R    T       G    +   L  +
Sbjct: 461 DIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVN 516

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           ++K +   L R + +L IRHVG   AR+LA  + S    A                L  V
Sbjct: 517 LDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAA----------STDQLAAV 566

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             VG  IA A+ E++    +   V+         +   +++V   +    +V TG+L   
Sbjct: 567 EGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGF 626

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R  A+E +   G   +  +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL   
Sbjct: 627 SRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLADG 686

Query: 722 NTT 724
             +
Sbjct: 687 PAS 689


>gi|329576880|gb|EGG58365.1| DNA ligase [Enterococcus faecalis TX1467]
          Length = 676

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 238/714 (33%), Positives = 381/714 (53%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL     P
Sbjct: 6   LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + +  E
Sbjct: 63  DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+  I   +EVRGE 
Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+      R LN F++ +     + 
Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+EF+
Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG   ++PRW I++KF  ++A T + DI+  I  TG++TP A + PV + G  ++ 
Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIDCTGVVTPTAVMAPVRVAGTTVSR 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D+I+            +DIR+ D V++ +AG++IP+V  ++V +R  D+QP+  
Sbjct: 357 ASLHNADFIQM-----------KDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEM 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S +V            A RC     C AQ  E L HFVSR+A NI+GLG + 
Sbjct: 406 PTHCPICHSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIDGLGPRV 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L   +        ++  AD++ L   Q  +      +    + S  N+Y +I   +  S+
Sbjct: 459 LAQMYDK----GLVKDVADLYFLTEEQLMT------LDKIKEKSANNIYTAIQGSKENSV 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA+ A+ LA+++      ++               ++ +  +G+ IA 
Sbjct: 509 ERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRAT----------AEEIVALDSIGETIAD 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V +++N      +  L K                 V S  ++K +V TG L +  R +
Sbjct: 559 SVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYTREE 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + NE++ +  L 
Sbjct: 619 AKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMVDALD 672


>gi|78043193|ref|YP_359946.1| DNA ligase, NAD-dependent [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|123743192|sp|Q3AD38|DNLJ_CARHZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|77995308|gb|ABB14207.1| DNA ligase, NAD-dependent [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 664

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 243/719 (33%), Positives = 370/719 (51%), Gaps = 69/719 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E  +K +  L   + YH+  YY   +P I D+EYD + R   ++   +P+      P
Sbjct: 1   MDKEAVKKRIEELRALLHYHNYRYYVLDQPEISDAEYDRMLRELISLEQQYPEFI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE+     +V H  P  SL+  +  EDL++F  R+           + + +E
Sbjct: 58  DSPSQRVGGEVAKEFREVAHLKPMYSLDNAFGPEDLKEFDRRVRSLL---PGQEVEYEVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE G  V  A RG+G +GED++A ++ I  IP  L   IP ++EVRGE 
Sbjct: 115 LKIDGLAISLVYENGVLVRGATRGNGTTGEDITANVKTIKAIPLKLRNPIP-LLEVRGEA 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K  F  LN++    G   +ANPRNAA+G LR+L+P     R L+ F++ +G+     
Sbjct: 174 YMPKESFARLNEQREERGEPLFANPRNAAAGSLRQLDPKVTAERDLSAFMYAIGEVQGYE 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q E+++ +  LGF VN      N    +++Y       R +LPY IDGLV KV+  +
Sbjct: 234 PKTQAELMEWLSELGFKVNPYREVFNNIDDVINYCQSWHEKRFSLPYVIDGLVIKVNSLA 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  A+SPRW I++KF  + A TRL DI +++GRTG+LTP A  EPV++ G  +T 
Sbjct: 294 QQEALGFTAKSPRWAIAYKFPAEIAETRLKDIIVRVGRTGVLTPTAIFEPVSLAGTTVTR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNEDYI+            +DIR+GD + V++AGE+IP+VV+++  +R    + F  
Sbjct: 354 ASLHNEDYIR-----------EKDIRIGDIIRVQKAGEIIPEVVEVVKEKRTGAEKEFVM 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+CQ + VR          AA RCT   +C AQ  E + HF SR A NIEGLG   
Sbjct: 403 PDTCPVCQGKAVRLPGE------AAWRCTNA-SCPAQLKEGIVHFASRGAMNIEGLGPAV 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
            +   +    A  I   AD++ L         ++  +   G  S  NL ++I K +  SL
Sbjct: 456 AELLLE----AGLIHNYADLYYLSAE------EVARLPRMGKKSAENLINAIEKSKQNSL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER I+ LGIR VG + AR LA ++                       ++ +P VG  +A 
Sbjct: 506 ERLIYGLGIRLVGEKAARDLAVHFKELDKLIAAGE----------EEIMAIPSVGPKMAA 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I  F+    N+  +E L      +    E    + +E    V TGTL    R +A++ +
Sbjct: 556 SIKAFFAQKENLELIEKLKAAGVNTKYLAEVR-DNRLEGLTFVLTGTLSSFTRKEAEQLI 614

Query: 671 TQLGA-----------VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             LG                        ++VG++PGSKL KA++LG+ I+ EE+F  ++
Sbjct: 615 LSLGGKVSSSVSKKTS-----------YVVVGEDPGSKLTKAKELGIPILTEEEFRQMV 662


>gi|34581289|ref|ZP_00142769.1| DNA ligase [Rickettsia sibirica 246]
 gi|28262674|gb|EAA26178.1| DNA ligase [Rickettsia sibirica 246]
          Length = 689

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 272/712 (38%), Positives = 421/712 (59%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S E+A+K L  L  +I+ ++  YY    P++ DSEYD L      +   FP L   
Sbjct: 4   IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  K+G ++     KVTH +P LSL   ++ +D+R F+ RI  F +  +   I  
Sbjct: 64  ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPI-- 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G     A RGDG+ GED++A I+ I   P     N+PE +EVR
Sbjct: 119 FCEPKIDGLSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPH-KIDNVPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN E    G+  +ANPRNAA+G LR+L+ +    R L +FV+  G T 
Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++  GF +N   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  
Sbjct: 298 DFALQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIPK++ +  ++R  D + 
Sbjct: 358 VSRATLHNFQEIAR-----------KDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FC  C S++               RC  GL C AQ  ER++HFVS++A +IEGLG
Sbjct: 407 FDTPLFCLSCNSKLHY------TPEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F          I  P DIF L+ +  +S  K+EN+ G+G  SV NL+ +I K +N
Sbjct: 461 RKQVEFLIDK----GLISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G + A+ LA+ + SY NF  ++  +  +  D +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I   I++F+    NI  ++ L + ++    +  +  SS + +K +VFTG+L  + R +A+
Sbjct: 577 ILVDIIDFFDVKENIELIKKLGEILNIEDYKETREQSS-LMDKIVVFTGSLPTMSRAEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               +LGA V+  +S  TD+++VG + GSKL+KA++L +KI++EE++L L++
Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVVGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687


>gi|157828943|ref|YP_001495185.1| NAD-dependent DNA ligase LigA [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933668|ref|YP_001650457.1| NAD-dependent DNA ligase LigA [Rickettsia rickettsii str. Iowa]
 gi|166216235|sp|A8GTF2|DNLJ_RICRS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359278|sp|B0BUZ1|DNLJ_RICRO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157801424|gb|ABV76677.1| NAD-dependent DNA ligase LigA [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908755|gb|ABY73051.1| NAD-dependent DNA ligase [Rickettsia rickettsii str. Iowa]
          Length = 689

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 271/712 (38%), Positives = 420/712 (58%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S E+A+K L  L  +I+ ++  YY    P++ DSEYD L      +   FP L   
Sbjct: 4   IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  K+G ++     KVTH +P LSL   ++ +D+R F+ RI  F +  +   I  
Sbjct: 64  ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPI-- 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G     A RGDG+ GED++A I+ I   P     N+PE +EVR
Sbjct: 119 FCEPKIDGVSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPH-KIDNVPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN E    G+  +ANPRNAA+G LR+L+ +    R L +FV+  G T 
Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++  GF +N   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+LQ ++G  AR+PR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  
Sbjct: 298 DFALQNRMGFIARNPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIPK++ +  ++R  D + 
Sbjct: 358 VSRATLHNFQEIAR-----------KDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FC  C S++               RC  GL C AQ  ER++HFVS++A +IEGLG
Sbjct: 407 FDTPLFCLSCNSKLHY------TPEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F          I  P DIF L+ +  +S  K+EN+ G+G  SV NL+ +I K +N
Sbjct: 461 RKQVEFLIDK----GLISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G + A+ LA+ + SY NF  ++  +  +  D +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I   I++F+    NI  ++ L + ++    +  +  SS + +K +VFTG+L  I R +A+
Sbjct: 577 ILVDIIDFFDVKENIELIKKLGEILNIEDYKETREQSS-LTDKIVVFTGSLPTISRAEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               +LGA V+  +S  TD+++ G + GSKL+KA++L +KI++EE++L L++
Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVAGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687


>gi|257454409|ref|ZP_05619671.1| DNA ligase, NAD-dependent [Enhydrobacter aerosaccus SK60]
 gi|257448175|gb|EEV23156.1| DNA ligase, NAD-dependent [Enhydrobacter aerosaccus SK60]
          Length = 675

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 254/714 (35%), Positives = 387/714 (54%), Gaps = 43/714 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++      ++  L  ++  H+  YY    P++ DSEYD L++   A+  A+P L +S   
Sbjct: 3   MNTAAITAQMRKLIAQLKQHNHAYYVLDNPLLEDSEYDQLRQELVALETAYPQLVQS--- 59

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P N++G +      +VTH IP LSL  ++  +DL+ F+ R+       +  +  + +E
Sbjct: 60  DSPTNQVGDKPLPFFTQVTHQIPMLSLGNLFTFDDLQNFMRRVNDRLA-DNQQNPEYEVE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  +++ Y+ G+F  A  RGDG +GED++  +R I  +P  L+++IP  +EVRGEV
Sbjct: 119 LKLDGLAVSLLYQNGQFTQAVTRGDGQTGEDITQNVRTIRNLPLQLAIDIP-RLEVRGEV 177

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF 250
            + K  F  LN +  A G K +ANPRNAA+G LR+L+P         F+ + + +     
Sbjct: 178 LMPKAGFAKLNRDAQAKGEKTFANPRNAAAGSLRQLDPNIAKSRPLAFYAYSVNQGLPAE 237

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q + L  ++ LGF   + ++   T   + +YY  +   RS LP++IDG V KV+  +
Sbjct: 238 ITTQSDALFWLKALGF-SISDIKIVQTAAQLQAYYQAVIEKRSHLPFEIDGTVIKVNSLA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  +R PRW  ++KF  +   TRL  I+ Q+GRTG LTPV +LEPVN+GG  ++N
Sbjct: 297 LQEQLGFLSREPRWATAYKFPAETVMTRLNAIEWQVGRTGQLTPVGKLEPVNVGGVTVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            TLHN   I+ L           DIR GD V V RAG+VIPKV  +  +ER  +AQ  S 
Sbjct: 357 VTLHNIGEIQRL-----------DIRAGDMVSVHRAGDVIPKVTRVWTDERPANAQVVSL 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V+           A  RCTGGL C AQQ E L HFVSR A +I+GLG++ 
Sbjct: 406 PTHCPVCDSPVIMPEGE------ALARCTGGLFCPAQQQEALIHFVSRKAMDIDGLGERW 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L  FF+       ++  ADI+ L + +      + N+   G+ SV N+  +I K ++ +L
Sbjct: 460 LINFFEQ----GIVKNVADIYALSKHRD----ALINLEKLGEKSVENMLAAIEKSKDTTL 511

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFIF+LGI  VG   A +LA  +   Q                  +L + P VG+  A 
Sbjct: 512 PRFIFALGIGGVGESTAMNLAMQFGDLQPLMAA----------SIEALQKTPDVGEKTAD 561

Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +I EF++   NI  +  LL+              +  ++ +  V TGTL+ + R +A+  
Sbjct: 562 SIFEFFRAEHNIEVINRLLQAGIHWQPVSQVPEGNQPLKGQSWVITGTLESMGRDEAKAK 621

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +  LGA VS  +S KT  ++ G+  GSKL  A++LGVK++ E QF  LL  Y+ 
Sbjct: 622 LQALGAKVSGSVSAKTTALLAGEKAGSKLANAEKLGVKVVTEAQFTDLLNTYHA 675


>gi|327475237|gb|AEA77213.1| DNA ligase [Bacillus aquimaris]
          Length = 668

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 248/715 (34%), Positives = 385/715 (53%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A K +  L   ++ ++  Y+   KP + DSEYD L R    +   FPDL  S   
Sbjct: 1   MDKQSAEKRVKELHDVLNQYNYEYHVLDKPSVPDSEYDQLLRELIELEDQFPDLKTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  S  KV H  P LSL   +N EDLR F  R+ +       +   +  E
Sbjct: 58  DSPSERVGGSILESFEKVEHRTPMLSLGNAFNEEDLRDFDRRVRQSVG----DDFSYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG  GED+++ ++ I +IP  +S  I    EVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGVFVQGATRGDGTIGEDITSNLKTIRSIPLKISEPIS--FEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           ++ K  F ALN        +P+ANPRNAA+G LR+L+P    +R L+ F++ L    +  
Sbjct: 172 FMPKGSFEALNKVKEEKEEEPFANPRNAAAGSLRQLDPKIAASRNLDIFLYALADVGDTG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   E L ++  LGF  N   R+  T   ++ +       R  LPYDIDG+V KVD   
Sbjct: 232 IESHSEGLDRLERLGFKTNQERRRCATIEEVIEFVEGWTDKRPNLPYDIDGIVIKVDALQ 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  A+SPRW I+ KF  ++  T L DI++ IGRTG+LTP A L+PV + G  +  
Sbjct: 292 QQQQLGTTAKSPRWAIAFKFPAEEVVTVLKDIELSIGRTGVLTPTAILDPVRVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DI++GD V++K+AG++IP+VV+++ ++R  + Q F  
Sbjct: 352 ASLHNEDLIR-----------EKDIKIGDHVVIKKAGDIIPEVVNVLEDKRTGEEQEFKM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTHCPECDSELVRLEGE------VALRCINPK-CPAQIREGLIHFVSRNAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+ +     I   AD++ L+R Q         +   G+ SV NL ++I   +  SL
Sbjct: 454 ISQLFREK----LIEDVADLYRLEREQL------LQLERMGEKSVDNLLEAIEASKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LG+RHVGA+ A++LA+ + S +                   L  +  +G+ +A 
Sbjct: 504 EKLLFGLGVRHVGAKAAKTLAQQFHSMEKLMTVSK----------DELTDINEIGEKMAA 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           AIV ++ N      +E L +       +  K      V S    K +V TG ++ + R++
Sbjct: 554 AIVAYFDNEEVKELIEELKEAGVNLEYKGPKPVKVSEVDSYFAGKTVVLTGKIEVLSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+KTD++I G++ GSKL KA +L +++ +E++ +  L +
Sbjct: 614 AKDKIEMLGGKVTGSVSKKTDLVIAGEDAGSKLAKANELNIEVWDEDKLMEELNR 668


>gi|228989472|ref|ZP_04149457.1| DNA ligase [Bacillus pseudomycoides DSM 12442]
 gi|228770197|gb|EEM18776.1| DNA ligase [Bacillus pseudomycoides DSM 12442]
          Length = 669

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 391/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E+A++ +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEEAKQRIEELRDMLNAFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLIE--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD+++ +  E
Sbjct: 58  DSPTVRVGGAVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDSNVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+FV  A RGDG +GED++  ++ I  IP  L   +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFVQGATRGDGVTGEDITQNLKTIKAIPLRLKEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G LR+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEAVFANPRNAAAGSLRQLDPKIAAKRNLSMFVYGLADVKEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IASHSESLNFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPNLNYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ  LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQDSLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVIVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC    AC AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACDSELVRLEEE------VALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+    A  IR  AD++ L + Q         +  FG+ S + L  +I   +  SL
Sbjct: 455 ITQLFE----ADYIRTFADLYPLTQEQL------LQLERFGEKSASKLVQAIETSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+LA+++ +  +  +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTLAEHFETMDHLVKATE----------EELKEINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           +IV ++ N   +  ++   +       +  K     N++S    K +V TG L+ + R +
Sbjct: 555 SIVTYFDNEDVLELLQQFKEYGVNMTYKGIKRADLQNIASYFAGKTIVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ + +LG  V+  +S+ TD+++ G+  GSKL +A++  +++ NEE+FL  L +
Sbjct: 615 AKKKIEELGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNIEVWNEERFLQELNK 669


>gi|223986795|ref|ZP_03636777.1| hypothetical protein HOLDEFILI_04100 [Holdemania filiformis DSM
           12042]
 gi|223961228|gb|EEF65758.1| hypothetical protein HOLDEFILI_04100 [Holdemania filiformis DSM
           12042]
          Length = 663

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 229/705 (32%), Positives = 372/705 (52%), Gaps = 47/705 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
              + +L ++++ ++  Y+    P + D+EYD L R    +    P+L    DPN P  +
Sbjct: 3   EDRILALRRQLNQYNYEYHVLDHPTVSDAEYDQLMRELITLEQQHPELF---DPNSPTQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K+TH  P LSL  ++N E+L +F  +      + +   + +  E KIDG 
Sbjct: 60  VGGQVLEEFNKITHKRPMLSLGDVFNKEELFEFARK-----AEAEVGPVDYCCECKIDGL 114

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++ Y+ G+F YA  RGDG  GEDV+  +R I +IP    +     +EVRGEVY+ K  
Sbjct: 115 AMSLNYQGGRFQYAVTRGDGVVGEDVTHNVRTIKSIPME--IEYEGELEVRGEVYMPKAS 172

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYE 256
           F  LN +    G + +ANPRNAA+G +R+L+        L+   + + +  ++      E
Sbjct: 173 FERLNQKRRENGEEEFANPRNAAAGSIRQLDSKVAASRGLDALWYHVPQGPQLGHHQHSE 232

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LGF +N   R       +  +  ++  +RS LPY+IDG+V KV+++  Q+QLG
Sbjct: 233 SLDFIHSLGFRINPLNRLCRNIEEVWQFVEDLTLMRSDLPYEIDGIVIKVNDYEKQQQLG 292

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A++P+W I++KF  ++A TRL +I + +GRTG +TP A+L PV + G  +  A LH+E
Sbjct: 293 FTAKTPKWAIAYKFPAEEAVTRLENIFVTVGRTGKITPNAQLTPVRLAGTSVGFAQLHDE 352

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+GD V+V +AG++IP++V  +  +R     P+ FP  CP+
Sbjct: 353 DMIR-----------DKDIRIGDYVIVHKAGDIIPEIVASVPEKRDGLQVPYVFPKVCPV 401

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C   +VR  +        AH       C A+ +E + HF SRDA NI+GLG ++++ F  
Sbjct: 402 CGMPLVRYPDE-------AHHFCINNDCPARVVESIAHFCSRDAMNIDGLGVKRVELFHS 454

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +    DI+ L+        +I      G  S  NL ++I   +  SLE+ ++ 
Sbjct: 455 Q----GWLNTVEDIYNLKDH----YDEILETPKMGKKSADNLLEAIENSKQNSLEKLLYG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G + A+ LA  + + Q   Q            +  L  +  +G I AQ +++F+
Sbjct: 507 LGIRQIGEKAAKILAYRFETMQALMQAT----------YEELEEIKDIGAITAQTVLDFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            +  N   +EAL+      I   E+ V +    K +V TGTL  + R +AQ  +  LGA 
Sbjct: 557 HDEANQHLIEALIGHGLNMICLKEEQVETIFTGKTVVLTGTLATMTRPEAQALLEHLGAT 616

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           VS  +S++TD +I G+N GSKL KAQ LGV  M E +F+  + ++
Sbjct: 617 VSGSVSKRTDFVIYGENAGSKLTKAQSLGVATMTESEFMEEVNRH 661


>gi|254411541|ref|ZP_05025318.1| DNA ligase, NAD-dependent [Microcoleus chthonoplastes PCC 7420]
 gi|196182042|gb|EDX77029.1| DNA ligase, NAD-dependent [Microcoleus chthonoplastes PCC 7420]
          Length = 676

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 230/719 (31%), Positives = 366/719 (50%), Gaps = 55/719 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   ++ +  L   +      YY    P++ D+ YD L R    +   +P+L     P+ 
Sbjct: 1   MTNVKQRVQELRNLLQQASYAYYVRDNPMMEDAVYDQLYRELQDLESQYPELV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +       V H+IP  SLE  +N+E+L K+  R  R+    D  ++ +  E K
Sbjct: 58  PTQRVGEKPASEFSSVRHNIPLYSLENAFNLEELAKWQERWQRY--APDVKNVEYVCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVY 192
           IDG+ I + Y+ G  V    RGDG +GED++  IR I +IP    +   P I+EVRGE +
Sbjct: 116 IDGSAIALTYKDGVLVRGVTRGDGVTGEDITQNIRTIRSIPLRLSTETPPPIVEVRGEAF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT----- 246
           +  + F  +N E  A G   +ANPRNAA+G LR+L+P  +  R L+FF + L        
Sbjct: 176 LPLDVFEGINREREAAGEALFANPRNAAAGTLRQLDPKIVDRRQLDFFAYTLHLPGSEEQ 235

Query: 247 -SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            +    K Q+E L+ +R LGF VN   ++  +   +  YY    S R  LPY  DG+V K
Sbjct: 236 ETVPTLKSQWEALEFLRDLGFRVNPNRKRCASLAEVEEYYQYWDSQRRDLPYMTDGVVVK 295

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           ++ FSLQ+QLG   + PRW I+ K+  +++ T + ++ +Q+GRTG LTPVA L+PV + G
Sbjct: 296 LNSFSLQEQLGFTQKFPRWAIALKYPAEESPTLVQNVTVQVGRTGALTPVAELKPVQLAG 355

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ ATLHN D I+ L           ++ +GD V+V++AGE+IP+VV ++   R P+A
Sbjct: 356 TTVSRATLHNRDRIEEL-----------NLHLGDTVIVRKAGEIIPEVVRVLPELRPPEA 404

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +P   P+ CP+C   VVR          A  RC    +C A     L H+ SR A +I G
Sbjct: 405 KPVQMPTDCPVCHQPVVRPPGE------AVTRCINA-SCPAIVKGSLNHWASRGALDING 457

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++ ++    S      +   AD++ L   Q        N+   G+ S   L + I + 
Sbjct: 458 LGEKLVNQLVDS----GLVHSVADLYQLTLDQL------TNLERMGEKSAQKLINQIEQS 507

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
                 R ++ LGIR+VG   A+ LA+ + S    A                +  V  +G
Sbjct: 508 NTQPWSRVLYGLGIRYVGTVNAQILAQQFPSVDQLAAAR----------VTDIESVYGIG 557

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             IAQ++ ++++ P N   +  L +              +  S  ++ K  V TGTL  +
Sbjct: 558 SEIAQSVNDWFRVPSNQTLINRLREANLQLAGEPKVASAEAKSQPLQGKTFVITGTLPTL 617

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +R  A++ +   G  V++ +S KTD ++VG++ GSKLEKAQ+LG+  ++E   L  L +
Sbjct: 618 KRDDAKKLIQNAGGKVTSSVSSKTDYVLVGEDAGSKLEKAQELGINQISESDLLQWLNE 676


>gi|83312957|ref|YP_423221.1| NAD-dependent DNA ligase [Magnetospirillum magneticum AMB-1]
 gi|123726860|sp|Q2W0G3|DNLJ_MAGMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|82947798|dbj|BAE52662.1| NAD-dependent DNA ligase [Magnetospirillum magneticum AMB-1]
          Length = 698

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 290/722 (40%), Positives = 433/722 (59%), Gaps = 39/722 (5%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +IP+EAL+  +AR E + L + I+  D+ Y+    P + D  YD  KRR   I   FP+L
Sbjct: 1   MIPVEALTPFEARIEHAELVETIARWDEAYHAKDAPEVPDDVYDGAKRRLARIEGRFPEL 60

Query: 66  ARSEDPNGPLN-KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           A       P+  K+G   +    K+ H++P LSL+  +  ED+ +F  ++ RF    D+ 
Sbjct: 61  AAK----SPIRDKVGAAPSEGFGKLVHAVPMLSLDNAFAPEDVAEFDAKVRRFLGLGDEA 116

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP--TIPRVLSLNIP 182
            + +  EPKIDG  I +RYE G+FV AA RGDG  GEDV+  +   P   +PR L  + P
Sbjct: 117 PLAYVAEPKIDGLSINLRYEGGRFVSAATRGDGAEGEDVTRNLETFPATQLPRTLGPDAP 176

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
            +IE+RGEVY++K DFLALN    A G K +ANPRNAA+G LR+L+P    +R L+ F +
Sbjct: 177 AVIEIRGEVYMTKADFLALNQRQEAAGEKLFANPRNAAAGSLRQLDPKVTASRPLSLFAY 236

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
            +G+ S   A   +E L++++  GF VN  +R+ +   G++S Y  +   R+TL YDIDG
Sbjct: 237 AMGEASAPPAASHWEYLERLKAWGFVVNPLIRRCDGVAGLLSAYESLGEARATLAYDIDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKVD+  LQ++LG  +RSPRW I+HKF  +QA+T L  IDIQ+GRTG LTPVARL PV
Sbjct: 297 IVYKVDDIELQRRLGFVSRSPRWAIAHKFPAEQATTLLEAIDIQVGRTGALTPVARLTPV 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
           N+GG +++NATLHNED I             +D+R+GD V+V+RAG+VIP++V ++  + 
Sbjct: 357 NVGGVVVSNATLHNEDEIAR-----------KDVRIGDTVIVQRAGDVIPQIVGVVPGKP 405

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              A PF +P  CP+C +  VR             RCTGGL C AQ  ERLKHFVSR+AF
Sbjct: 406 RG-AVPFVYPETCPVCGAHAVRPEGE------VIRRCTGGLTCEAQAKERLKHFVSRNAF 458

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR-QQTSTTKIENILGFGDVSVTNLYD 540
           +IEGLG++ ++F ++       +R PADIF L+ R       ++EN  G+G  S   L++
Sbjct: 459 DIEGLGEKNIEFLWEK----GWVRGPADIFRLKARNDAELLQRLENFEGWGKRSTEKLFE 514

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           SI  R  + LERFIF+LGIR +G   A+ LA++Y S+  +   +   +A   +    L  
Sbjct: 515 SIKTRSAMGLERFIFALGIRQIGEATAKRLARHYGSFGAWRAAM---LAGTEEARAELTS 571

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFT 655
           +  +G  +A  +++F+    N+ AV+ L+        +    +  ++ +S +  K +VFT
Sbjct: 572 IEDIGPSVAGDLLDFFSEEHNVQAVDDLVAAMAALDGAVEDAKVIESSASPVAGKAVVFT 631

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R +A+     LGA V   +S+KTD ++VG + GSK  +A +LG+  ++E+++L
Sbjct: 632 GTLVTMTRPEAKARAEALGAKVVGSVSKKTDYVVVGADAGSKAAEAVKLGIATLSEQEWL 691

Query: 716 FL 717
            L
Sbjct: 692 AL 693


>gi|257065343|ref|YP_003145015.1| DNA ligase, NAD-dependent [Slackia heliotrinireducens DSM 20476]
 gi|256792996|gb|ACV23666.1| DNA ligase, NAD-dependent [Slackia heliotrinireducens DSM 20476]
          Length = 708

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 225/719 (31%), Positives = 366/719 (50%), Gaps = 47/719 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++   +  + +L +EI +H   YY    P I D+ +D+L R    +  A P      DP 
Sbjct: 15  TVSDVKARIDALRKEIEHHTYLYYAKDAPEISDAAFDSLMRELRELELANPQYI---DPT 71

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG +      V H++   SL+    +++L +++ R          + + F  E 
Sbjct: 72  SPTQRVGGYVGEQFSPVRHAVRMYSLDNAMGLDELDEWLARTLEAIG----HPVQFCCEL 127

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-------II 185
           KIDG+ I + YE G    AA RGDG +GEDV+  +R +  IP  L  +           I
Sbjct: 128 KIDGSSIALTYEAGVLTKAATRGDGTTGEDVTVNMRTVRDIPLRLRDDGMAGLRDSDASI 187

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLG 244
           EVRGEVY+ K+ F  LN    A G++ +ANPRNAA+G LR+ +P       L  F++ + 
Sbjct: 188 EVRGEVYMPKSSFEKLNAAAEATGKQGFANPRNAAAGSLRQKDPKITQNRDLATFLYAIA 247

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             + I A+ Q ++L+ +R  GF VN  V+  +T   +  +  ++   R +LPY IDG+V 
Sbjct: 248 DDAPIRAESQNDLLEWLRDCGFHVNPDVKLCDTPQEVHDFCEQVAEKRDSLPYGIDGVVV 307

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++F+ Q+ +G  AR+PRW I++KF  ++ +T + DI +Q+GRTG  TPVA L+PV + 
Sbjct: 308 KVNDFATQRDMGFTARAPRWAIAYKFPPEEKTTVMHDITVQVGRTGACTPVAELDPVLVD 367

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ +  ATLHN D ++            +D+R+GD V+V++AG+VIP+++  +++ R   
Sbjct: 368 GSTVARATLHNLDEVRR-----------KDVRIGDTVIVRKAGDVIPEILGPVLSLRPEG 416

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+P+  P+ CP C S +VR+         AA RC   + C AQ +ERL H+ SR A +I+
Sbjct: 417 AKPWEMPATCPSCGSPLVREEGE------AAFRCVS-IDCPAQAMERLIHWASRGAMDID 469

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPA-DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           G+G + +    +S              + L   +     K    +  G      L  S+ 
Sbjct: 470 GMGDEIVARLVESGRVLDVADYYNLTEYDLATLETGRINKEGEPIHLGGTIAAKLMASLE 529

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             ++ +  R +F LGIRHVG     ++A  Y S +                   L +V  
Sbjct: 530 ASKSRTFARVLFGLGIRHVGKTTGEAIAAAYPSMEKLMNATE----------EGLAQVDG 579

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTL--QK 660
           +G +IA++IV F     N   +  L +          E ++   +     V TG+L    
Sbjct: 580 IGAVIAKSIVTFLATEDNREVIHRLERAGVTMADEVKESDIPQTLAGITFVLTGSLTESG 639

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + R +A + +  +GA VS  +S+KT  ++ G+  GSK +KA QLGV ++ E +FL LL+
Sbjct: 640 MTRTEAGDRLKAMGAKVSGSVSKKTGYVVAGEAAGSKYDKAVQLGVPVLTEAEFLRLLE 698


>gi|269127766|ref|YP_003301136.1| DNA ligase, NAD-dependent [Thermomonospora curvata DSM 43183]
 gi|268312724|gb|ACY99098.1| DNA ligase, NAD-dependent [Thermomonospora curvata DSM 43183]
          Length = 722

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 223/736 (30%), Positives = 351/736 (47%), Gaps = 62/736 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +  +A +  + L +EI   +  YY   +P + D+EYD L R    +    P+L     P+
Sbjct: 7   TPTEAARRHAELSREIDEANYRYYVLDRPTLSDAEYDRLMRELRELEERHPELV---TPD 63

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G  +      V H    LSL+     E+L  +  R+ +   ++      +  E 
Sbjct: 64  SPTQRVGAPIVTDFATVQHLERMLSLDNAMTGEELAAWGERVLKEVGEQA----SYLCEL 119

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEV 191
           KIDG  + + Y  G+ V  A RGDG +GEDV+  IR I  +P  LS    P ++EVRGEV
Sbjct: 120 KIDGLAVALVYRDGRLVRGATRGDGRTGEDVTNNIRTIDVVPDRLSGEGWPSLLEVRGEV 179

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEI 249
           +++   F  +N  M+  GR+P+ANPRNAA+G LR+ +P     R L+  VHG G      
Sbjct: 180 FLTVASFEQINAAMVDAGREPFANPRNAAAGSLRQKDPRITARRPLSMLVHGFGAWEGRE 239

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             + Q E  + MR  G PV++  +      G+  Y       R   PY+IDG+V KVD+ 
Sbjct: 240 LPRSQSEAYELMRSWGLPVSDLYKVVPDLEGVREYVAHYGEHRHDPPYEIDGVVVKVDQL 299

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ+++G  +R+PRW I+ K+  ++ +T+LLDI + +GRTG +TP   +EPV + G+ + 
Sbjct: 300 ALQRRMGSTSRAPRWAIAFKYPPEEVNTKLLDIKVGVGRTGRITPYGVMEPVKVAGSTVA 359

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   +             + + +GD V++++AG+VIP++V  +   R    +PF 
Sbjct: 360 YATLHNAGEVAR-----------KGVLIGDTVVLRKAGDVIPEIVKPVTELRDGSERPFH 408

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C +R+  +      +  A  RC     C  Q  ERL    SR+A +IE LG  
Sbjct: 409 MPETCPECGTRLAYE-----KEGDADIRCPNARYCPGQLRERLFFAASRNALDIEALGYV 463

Query: 490 QLDFFFKSEDPA-FSIRIPADIFTLQRRQ------------------------QTSTTKI 524
                 +  +P+   +R   D+F L+  Q                        Q   +  
Sbjct: 464 AATALTQPLEPSDPPVRNEGDLFHLKVEQLLPIRTVVRDPRTGLPKIDPKTGEQKVVSFF 523

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
               G    +V  L+  + K +   L R + +L IRHVG   AR+LA+ + S     +  
Sbjct: 524 ATKDGRPKKTVEVLFAELEKAKTRPLWRVLVALSIRHVGPTAARALAREFGSIDAIMKAS 583

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
                        L  V  VG  IA +I  ++    +   +E               +  
Sbjct: 584 E----------EELAAVDGVGPAIAASIKRWFAEDWHREIIEKWRAAGVRMADE-GADGP 632

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +    +V TGTL+   R  A E V   G  V+  +S+KT+ ++VGDNPGSK +KA +L
Sbjct: 633 RPLSGVAVVITGTLEHYSRDSATEAVLSRGGRVTGSVSKKTNFVVVGDNPGSKYDKAVKL 692

Query: 705 GVKIMNEEQFLFLLQQ 720
           GV +++E+ F  LL+Q
Sbjct: 693 GVPVLDEDGFRVLLEQ 708


>gi|159036755|ref|YP_001536008.1| DNA ligase, NAD-dependent [Salinispora arenicola CNS-205]
 gi|190359280|sp|A8M5E3|DNLJ_SALAI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157915590|gb|ABV97017.1| DNA ligase, NAD-dependent [Salinispora arenicola CNS-205]
          Length = 710

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 227/709 (32%), Positives = 351/709 (49%), Gaps = 43/709 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR+  ++L  E++ H   YY    P I D+E+D   R   A+   FP L     P+ P  
Sbjct: 25  ARERHATLSLELTEHQYRYYVLDAPTISDAEFDERLRELAALEAEFPAL---RTPDSPTQ 81

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG  +     V H+   +SL+  +  E+L  +  R+ R         + +  E K+DG
Sbjct: 82  RVGGAFSTDFTPVAHAERMMSLDNAFTDEELDAWAERVER----DAGGPVPYLCELKVDG 137

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-----LSLNIPEIIEVRGEV 191
             I + YE+G+ V AA RGDG +GEDV+A +R+I  +P           IP ++EVRGE+
Sbjct: 138 LAINLTYERGRLVRAATRGDGRTGEDVTANVRSIRDVPAELAPSAEFPEIPGLLEVRGEI 197

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y     F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L   VHG+G      
Sbjct: 198 YFPIAGFADLNAGLVEQGKAPFANPRNAAAGSLRQKDPRITASRPLRLVVHGIGARQGWQ 257

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E    +R  G P ++  R      G+  Y     + R  + ++IDG+V KVD  S
Sbjct: 258 PSTQSESYAALRAWGLPTSDRWRVVPDLAGVAEYIAHYATHRHDVEHEIDGVVVKVDPVS 317

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I+ K+  ++ +TRLLDID+ +GRTG +TP A LEPV + G+ +  
Sbjct: 318 IQGRLGSTSRAPRWAIAFKYPPEEVNTRLLDIDVNVGRTGRVTPFAVLEPVRVAGSTVAL 377

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN   ++            + + +GD V++++AG+VIP+V+  +V  R PDA+ F  
Sbjct: 378 ATLHNAREVRR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELRPPDARSFVM 426

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP C + +         +     RC    +C AQ  ER+ H   R AF+IE LG + 
Sbjct: 427 PSTCPCCGTPLA-----PAKEGDVDIRCPNTRSCPAQLRERVFHLAGRGAFDIEVLGYKG 481

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                 ++     I    D+F L   Q T +    N  G    +   L D++   +   L
Sbjct: 482 AAALLDAQ----IITDEGDLFALDAAQLTRSPFFVNKDGSLGSNAVKLLDNLTVAKEREL 537

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IRHVG   A++LA+++ S +   Q               L  V  VG  IA 
Sbjct: 538 WRVLVALSIRHVGPTAAQALARHFRSIEAIDQAGE----------EELSAVDGVGPTIAA 587

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ E++    +   V    +                +E   +V TGTL    R +A E +
Sbjct: 588 SVREWFAVAWHREVVRKWAEAGVRMTEEAVDEGPRPLEGMTVVVTGTLAGFSRDQAAEAI 647

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G  V+  +S+KT  ++VG+NPG+K +KA  L V +++EE F  LL 
Sbjct: 648 QSRGGKVTGSVSKKTAFVVVGENPGTKADKAASLKVPVLDEEGFRVLLD 696


>gi|221639033|ref|YP_002525295.1| DNA ligase [Rhodobacter sphaeroides KD131]
 gi|254781405|sp|B9KRK2|DNLJ_RHOSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221159814|gb|ACM00794.1| DNA ligase [Rhodobacter sphaeroides KD131]
          Length = 704

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 302/714 (42%), Positives = 438/714 (61%), Gaps = 17/714 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P++ L+  +A  EL+ L + I   +  Y+ +  P I D++YDAL+ R  AI   FP+L R
Sbjct: 6   PVDQLTEAEAAAELARLAEAIEAANTAYHTHDAPQISDADYDALRLRNRAIEEQFPELRR 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           S   + P +++GG +     KV H +  LSLE  +++ ++  +I RI R+     D  + 
Sbjct: 66  S---DSPSDRVGGALAEGFAKVRHEVRMLSLENAFDLAEVEDWIERIRRYLGHVGD--LL 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT EPKIDG  +++RYEKG+ V AA RGDG +GE+V+   R I  +P  L    P+++EV
Sbjct: 121 FTAEPKIDGLSLSLRYEKGRLVQAATRGDGETGENVTENARTIADLPTELDGA-PDLLEV 179

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+S  DF ALN    A G++ +ANPRNAA+G LR+L+P    +R L FF +  G  
Sbjct: 180 RGEVYMSHEDFAALNGRQEAAGQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAH 239

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE  A  Q+E + ++  LGF  N   R       +++ + E++  R+ L YDIDG+VYKV
Sbjct: 240 SEPLAATQHEAIARLAALGFTTNPLTRLCTGPEELLAQHAEIERQRAALGYDIDGVVYKV 299

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +LQ++LG RA +PRW I+HKFA + A T+L  ID+Q+GRTG L+PVARL+PV +GG 
Sbjct: 300 DDLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDVQVGRTGALSPVARLKPVTVGGV 359

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++ NATLHNEDYI G D+ G+ +RGG+DIRVGD V V RAG+VIPKV D+ ++ R   A 
Sbjct: 360 VVANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLDRRPEGAA 419

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP C S  +R+         +  RCTGGL C AQQ+ERLKHFVSR AF+IEGL
Sbjct: 420 PYRFPETCPECGSEAIREPG------DSVRRCTGGLICPAQQVERLKHFVSRAAFDIEGL 473

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++  ++       IR PADIF L  R +    ++EN  G+G  S  NL+ +I  RR
Sbjct: 474 GAKQVEALWRD----GWIRQPADIFELPNRYREGIQRLENREGWGRKSAENLFAAIEARR 529

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I+L R IF+LGIRHVG   A  LA +Y S+  F   +         +W  L+ +  VG 
Sbjct: 530 RIALHRLIFALGIRHVGETTATLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGA 589

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A ++V  +       AVEAL   ++         V+S +  + +VFTGTL+K+ R +A
Sbjct: 590 VLATSLVTAFHQEAERAAVEALAAHLTVEDAEVRAPVASPVAGRIVVFTGTLEKMSRAEA 649

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +     LGA VS  +S +TD+++ G   GSK ++A  LG++ ++E+ +L L+  
Sbjct: 650 KARAEALGAKVSGSVSARTDLVVAGPGAGSKAKQAAALGIETIDEDGWLRLIGD 703


>gi|329897281|ref|ZP_08272019.1| DNA ligase [gamma proteobacterium IMCC3088]
 gi|328921277|gb|EGG28673.1| DNA ligase [gamma proteobacterium IMCC3088]
          Length = 674

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 250/707 (35%), Positives = 380/707 (53%), Gaps = 44/707 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
                K ++ L   I  +   YY++  P I D+EYD L R    +    P  AR    + 
Sbjct: 2   PADPAKRIAELIALIERYSQEYYEHDAPSISDAEYDQLFRELQTLEVQNPQYARR---DS 58

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG+       V H IP LSL+  ++ ++L  F  R        +  +I +  EPK
Sbjct: 59  PTQRVGGKPVEGFAPVMHVIPMLSLDNAFSNDELLDFDRRARERLGLLETATIDYVCEPK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEVRGEVY 192
           +DG  + IRYE+G  V AA RGDG +GED++  ++ +  IP  L      + +EVRGE++
Sbjct: 119 LDGIAVAIRYERGMLVQAATRGDGQTGEDITHNVKTVKNIPLQLHGAESIDALEVRGEIF 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIF 250
           + K  F  LN    A G K +ANPRNAA+G LR+L+P     R L F+ +G+G T     
Sbjct: 179 MPKRGFTRLNQRAEAQGEKTFANPRNAAAGSLRQLDPAITAKRPLAFYCYGVGVTQGVDI 238

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              QY +L+    LG PVN+ V+  +     + YY ++   RS L YDIDG+VYKV+  +
Sbjct: 239 PDSQYGLLRWYESLGLPVNDEVQAVSGIQACIDYYEQLSRRRSGLDYDIDGIVYKVNSLA 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q  LG  +R+PRW I+ KF  ++A T LLD++ Q+GRTG +TPVARLEPV++GG +++N
Sbjct: 299 EQADLGFVSRAPRWAIARKFPAEEALTHLLDVEFQVGRTGAITPVARLEPVSVGGVVVSN 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            +++GD V+V+RAG+VIP+V   +  ER  + +   F
Sbjct: 359 ATLHNADEIDRLQ-----------VKIGDLVVVRRAGDVIPQVARALPEERRGELRKIVF 407

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S +VR+         A  RC+G L CSAQ+   + HFVSR A +IEG G++ 
Sbjct: 408 PSHCPVCGSAIVREEGE------AVQRCSGALTCSAQRKGAIIHFVSRKAMDIEGFGEKL 461

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     ++ P+DI+ L      +  ++  +   G  S  NL D+I++ +  + 
Sbjct: 462 VEQLVDIER----LKDPSDIYGL------TFNELAALPRMGAKSAQNLIDAIDRSKRTTF 511

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+   ++                  L+ VP VG I+A 
Sbjct: 512 ARFLYALGIREVGVTTAERLADYFGDIESLIAA----------SVDDLLAVPDVGPIVAN 561

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEY 669
            I  F  +  ++  +  L++           +V +  +  +  V TG L+   R +A E 
Sbjct: 562 HIRSFLNSSTHLEVISTLVQAGLSWPEVAPIDVDNAPLVGQTWVVTGKLETFSREEATEL 621

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +  LGA V+  +S KT +++ G   GSKL KAQ LGV+++NE++FL 
Sbjct: 622 LKSLGASVAGSVSNKTTVLLAGPGAGSKLAKAQALGVEVINEDEFLA 668


>gi|308377195|ref|ZP_07441467.2| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu008]
 gi|13882885|gb|AAK47423.1| DNA ligase [Mycobacterium tuberculosis CDC1551]
 gi|308348655|gb|EFP37506.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu008]
          Length = 679

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 218/712 (30%), Positives = 348/712 (48%), Gaps = 43/712 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++  +L +E+  H   YY    PII D+E+D L RR +A+    P+L     P+ P   +
Sbjct: 3   RQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL---RTPDSPTQLV 59

Query: 79  GGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG         V H    LSL+  +  ++L  +  RI+            +  E KIDG 
Sbjct: 60  GGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH----YLCELKIDGV 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYI 193
            +++ Y +G+   A+ RGDG +GEDV+   R I  +P  L       +PE++EVRGEV+ 
Sbjct: 116 ALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFF 175

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
             +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    HGLG        
Sbjct: 176 RLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPA 235

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             ++    +R  G PV+     A    G+    +     R  + ++IDG+V KVDE +LQ
Sbjct: 236 TLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQ 295

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ +  AT
Sbjct: 296 RRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQAT 355

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   IK            + + +GD V++++AG+VIP+V+  +V  R    + F  P+
Sbjct: 356 LHNASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPT 404

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S +  +      +  A  RC     C  Q  ER+ H  SR+  +IE LG +   
Sbjct: 405 TCPECGSPLAPE-----KEGDADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGV 459

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +++     I    ++F L  R    T       G    +   L  +++K +   L R
Sbjct: 460 ALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWR 515

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            + +L IRHVG   AR+LA  + S    A                L  V  VG  IA A+
Sbjct: 516 VLVALSIRHVGPTAARALATEFGSLDAIAAA----------STDQLAAVEGVGPTIAAAV 565

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            E++    +   V+         +   +++V   +    +V TG+L    R  A+E +  
Sbjct: 566 TEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVA 625

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            G   +  +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL     +
Sbjct: 626 RGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLADGPAS 677


>gi|218439827|ref|YP_002378156.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7424]
 gi|254781306|sp|B7K8U0|DNLJ_CYAP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218172555|gb|ACK71288.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7424]
          Length = 678

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 231/712 (32%), Positives = 371/712 (52%), Gaps = 51/712 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++ +  L  ++      YY    PI+ D  YD L R    I   +P+L     P+ P 
Sbjct: 7   EIKQRVDQLRSQLQKASYAYYVLDNPIMEDVVYDQLYRELQNIETQYPELI---TPDSPT 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +++     V H+IP  SLE  +N+++  ++  R  R     D     +  E KID
Sbjct: 64  QRVGDKLSEQFISVNHNIPLYSLENAFNLQEFARWQERWQRL--TPDVTQFEYVCELKID 121

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVYIS 194
           G+ I + YE G  V    RGDG  GE+++  I+ I +IP  L+L+ P + IEVRGE ++ 
Sbjct: 122 GSAIALTYENGLLVRGVTRGDGIVGEEITPNIKTIRSIPLKLALDNPPVRIEVRGEAFLP 181

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEI-FAK 252
             +F  +N E    G   +ANPRNAA+G LR+L+P  + R    FF + L          
Sbjct: 182 IEEFERINQEKQTAGESLFANPRNAAAGTLRQLDPRIVDRRRLQFFAYTLYVIDSPSTPT 241

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q+E L+ ++ +GF VN   +   +   +  YY    + R  LPY  DG+V K++++ LQ
Sbjct: 242 TQWESLEDLQQMGFLVNPNRKLCQSEAEVDQYYQLWDTERHNLPYMTDGVVVKLNDYQLQ 301

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG   + PRW I+ K+  ++A T++ +I + +GRTG +TP+A +EPV + G  +  AT
Sbjct: 302 QQLGFTQKFPRWAIALKYPAEEAPTQVKNITVNVGRTGAVTPMAIMEPVQLAGTTVQKAT 361

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D +  L           DIRVGD V++++AGE+IP+VV +I   R P+ QP+  P+
Sbjct: 362 LHNSDRVAQL-----------DIRVGDTVIIRKAGEIIPEVVRVIEELRPPNTQPYQMPT 410

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S +VR          A  RC    +C A     L H+ SRDA +I GLG++ + 
Sbjct: 411 QCPECHSTLVRPKGE------AVTRCVNS-SCPAILRGSLVHWCSRDALDIRGLGEKVVI 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
               +      +   AD++ L+  Q  S      +   G  S  NL ++INK +     R
Sbjct: 464 LLIDN----GLVHSIADLYHLKVEQIAS------LERMGTKSANNLINAINKSKQQPWSR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            ++ LGIR+VG+  A+ L+  + S +  +Q            + SL  V  +G  IAQ++
Sbjct: 514 VLYGLGIRYVGSVTAKLLSDNFKSVEQLSQA----------SFTSLESVYGIGAEIAQSV 563

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKN-----VSSEIENKKLVFTGTLQKIQRHKAQ 667
            ++++   N   ++ L +         E        S+ +  K +V TGTL  ++R++AQ
Sbjct: 564 YDWFKIEANQTLIKNLQQAELQFETLSETPKYPPISSTPLAGKTVVITGTLPSLKRNEAQ 623

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E + + G  V+  +S KTD ++VG++ GSKL KAQQLG+  ++EEQ L ++ 
Sbjct: 624 ELIEKAGGKVTNSVSSKTDYLLVGEDAGSKLTKAQQLGISQLSEEQLLKMIN 675


>gi|254468809|ref|ZP_05082215.1| DNA ligase, NAD-dependent [beta proteobacterium KB13]
 gi|207087619|gb|EDZ64902.1| DNA ligase, NAD-dependent [beta proteobacterium KB13]
          Length = 669

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 256/713 (35%), Positives = 399/713 (55%), Gaps = 48/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +   K++S L+  I  HD CYY    P I D EYD+L R    I  + P+L     P
Sbjct: 1   MT-QDIIKKISYLKSVIQEHDHCYYVLDDPQISDHEYDSLLRELKNIEDSNPELI---TP 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       ++ H+ P LSL   + I +L  F  RI       D N + F  E
Sbjct: 57  DSPTQRVGGSPISEFNQIQHNKPMLSLGNAFGINELEAFNKRINDTL---DVNDVEFNAE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGE 190
            K DG  +TI YE G   YAA RGDG+ GEDV+  I+ I TIP  L  +      EVRGE
Sbjct: 114 LKFDGLAVTILYENGLMKYAATRGDGNVGEDVTHNIKTIKTIPLKLYGDNHPRTFEVRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE- 248
           V + KNDF  LN+  I++G+K +ANPRNAA+G LR+L+P     R L F+ + LG+  + 
Sbjct: 174 VLMDKNDFKELNEYQISLGQKTFANPRNAAAGSLRQLDPKITAKRKLKFYAYSLGQVDQD 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      ++L+ +   G P+++  ++    + +  +Y ++   R+ LP+DIDG+VYKV+ 
Sbjct: 234 LELTNHTDILKYIHNSGIPISSYSQRVVGINQMQHFYEDILKKRNDLPFDIDGIVYKVNS 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q+ LG  +++PRW I++KF  ++A T + DI++Q+GRTG++TPVARL+PV + G  +
Sbjct: 294 IKNQENLGYVSKAPRWAIAYKFPAEEAETVVNDINVQVGRTGVITPVARLQPVFVSGVTV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNATLHNED +             +DIR+GD V+V+RAG+V+P++V +I  +R  +A+ F
Sbjct: 354 TNATLHNEDEM-----------LRKDIRIGDSVIVRRAGDVVPEIVRVIKEKRPSNAKVF 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P +CPIC S+V+R          AA RCTG L C AQ  + + H+VSR A NIEGLG 
Sbjct: 403 EMPQYCPICNSQVIRIDGE------AAQRCTGQLKCEAQAKQAISHYVSRKAMNIEGLGA 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +D FF+       I+  +DI+ L   +           GFG+ S  NL ++I   +  
Sbjct: 457 KIIDHFFEK----GLIKNISDIYHLDYEEIQKM------EGFGERSAENLKEAIESSKKT 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L +FI++LGIR+VG   ++ + K   +  N  +                + +  VG ++
Sbjct: 507 TLAKFIYALGIRNVGEATSKDIVKKLGTLDNVMKA----------SIDDFLEINDVGPVV 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           AQ++ +F+Q   N   +  +++            +   ++  +  V TGTL+   R + +
Sbjct: 557 AQSLHQFFQEDENKAIINNIVEFGVKWEDQAQNVSNDQKLNQQTFVVTGTLENFSRDEIK 616

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           E +   G  VS  +S+KT  +I+GDNPGSK +KA +LGVK++NE+Q + LL +
Sbjct: 617 ELIENNGGKVSGSVSKKTSYVIIGDNPGSKADKAAELGVKVINEKQLMELLNE 669


>gi|228995667|ref|ZP_04155330.1| DNA ligase [Bacillus mycoides Rock3-17]
 gi|228764044|gb|EEM12928.1| DNA ligase [Bacillus mycoides Rock3-17]
          Length = 669

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 248/715 (34%), Positives = 391/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E+A++ +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEEAKQRIEELRDMLNAFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLIE--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD+++ +  E
Sbjct: 58  DSPTVRVGGAVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDSNVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+FV  A RGDG +GED++  ++ I  IP  L   +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFVQGATRGDGVTGEDITQNLKTIKAIPLRLKEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LNDE    G   +ANPRNAA+G LR+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNDEKEQNGEAVFANPRNAAAGSLRQLDPKIAAKRNLSMFVYGLADVKEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IASHSESLNFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPNLNYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ  LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQDSLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVIVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC    AC AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACDSELVRLEEE------VALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+    A  IR  AD++ L + Q         +  FG+ S + L  +I   +  SL
Sbjct: 455 ITQLFE----ADYIRTFADLYPLTQEQL------LQLERFGEKSASKLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+LA+++ +  +  +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTLAEHFETMDHLVKATE----------EELKEINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           +IV ++ N   +  ++   +       +  K     N++S    K +V TG L+ + R +
Sbjct: 555 SIVTYFDNEDVLELLQQFKEYGVNMTYKGIKRADLQNIASYFAGKTIVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ + +LG  V+  +S+ TD+++ G+  GSKL +A++  +++ NEE+FL  L +
Sbjct: 615 AKKKIEELGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNIEVWNEERFLQELNK 669


>gi|215412865|ref|ZP_03421575.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis
           94_M4241A]
 gi|298526485|ref|ZP_07013894.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis
           94_M4241A]
 gi|298496279|gb|EFI31573.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis
           94_M4241A]
          Length = 691

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 219/723 (30%), Positives = 353/723 (48%), Gaps = 43/723 (5%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    +  +  ++  +L +E+  H   YY    PII D+E+D L RR +A+    P+L  
Sbjct: 4   PDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL-- 61

Query: 68  SEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              P+ P   +GG         V H    LSL+  +  ++L  +  RI+           
Sbjct: 62  -RTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH--- 117

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIP 182
            +  E KIDG  +++ Y +G+   A+ RGDG +GEDV+   R I  +P  L       +P
Sbjct: 118 -YLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVP 176

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
           E++EVRGEV+   +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    H
Sbjct: 177 EVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICH 236

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           GLG          ++    +R  G PV+     A    G+    +     R  + ++IDG
Sbjct: 237 GLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVDE +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV
Sbjct: 297 VVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPV 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ +  ATLHN   IK            + + +GD V++++AG+VIP+V+  +V  R
Sbjct: 357 KVAGSTVGQATLHNASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELR 405

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + F  P+ CP C S +  +      +  A  RC     C  Q  ER+ H  SR+  
Sbjct: 406 DGSEREFIMPTTCPECGSPLAPE-----KEGDADIRCPNARGCPGQLRERVFHVASRNGL 460

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IE LG +      +++     I    ++F L  R    T       G    +   L  +
Sbjct: 461 DIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVN 516

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           ++K +   L R + +L IRHVG   AR+LA  + S    A    + +A           V
Sbjct: 517 LDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAASTDQVA----------AV 566

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             VG  IA A+ E++    +   V+         +   +++V   +    +V TG+L   
Sbjct: 567 EGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGF 626

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R  A+E +   G   +  +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL   
Sbjct: 627 SRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLADG 686

Query: 722 NTT 724
             +
Sbjct: 687 PAS 689


>gi|293609092|ref|ZP_06691395.1| DNA ligase [Acinetobacter sp. SH024]
 gi|292829665|gb|EFF88027.1| DNA ligase [Acinetobacter sp. SH024]
          Length = 679

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 260/720 (36%), Positives = 380/720 (52%), Gaps = 47/720 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++     +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +PDL +S   
Sbjct: 1   MATTSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDLVQS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  I + +E
Sbjct: 58  DSPTTKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKIQYEVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188
            K+DG  I++ YE G  +    RGDG +GED++  I+ I  +P+VL  +  EI   +EVR
Sbjct: 115 LKLDGLAISLWYENGVLIRGVTRGDGETGEDITQNIKTIRNLPKVLHSDHFEIPRLLEVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247
           GEV + K+ F  LN E  A G K +ANPRNAA+G LR+L+P         F+ +G+ +  
Sbjct: 175 GEVLMPKSGFEKLNAEQEAKGDKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 234

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  RS L  +IDG+V KV
Sbjct: 235 PNHGLTTMHDSLQWLIKLGFEIAERQYLCNSIQEVQQRYEQIQQERSDLQVEIDGMVVKV 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGV 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+RVGD V V R G+VIPKV  +    R  DA+
Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRPVDAE 403

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 404 VVHLPENCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++           ++  ADI+ L   ++     +  I   G+ SV NL D+I   +
Sbjct: 458 GDRWVESLLH----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +               D  +L + P VGD
Sbjct: 510 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------DVEALKKTPDVGD 559

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L+                 +  +  V TGTL+++ R +A
Sbjct: 560 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL 
Sbjct: 619 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAVMNETDFLSLMASYGQTLS 678


>gi|315122567|ref|YP_004063056.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495969|gb|ADR52568.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 739

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 483/726 (66%), Positives = 580/726 (79%), Gaps = 5/726 (0%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M  R+ IPIE LS EQA+KELS L+ EISYHDD YYQ+S+P ILD EYD LK RCDAIA 
Sbjct: 1   MANRKFIPIEELSPEQAKKELSFLQHEISYHDDLYYQHSQPKILDFEYDQLKERCDAIAR 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           AFP+ A   D NGPLNKIGGE N SLFK+THS P  SLEK   IED+  F+T+IYR  +K
Sbjct: 61  AFPEFASLADSNGPLNKIGGEKNFSLFKITHSPPMRSLEKSHQIEDINYFMTKIYRDLKK 120

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
              NSI FTLEPKIDG  ++IRYE+GKFV+A LRGDG+ GEDVSA I  +  IP+VLS  
Sbjct: 121 DCYNSIVFTLEPKIDGASLSIRYEQGKFVHAGLRGDGYIGEDVSANISMMSIIPQVLSFK 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP---TDITRYLN 237
           +PEI EVRGE+YISK DF  LN+EM    +K Y+NPRN  +G+LR  N    + I+RYL 
Sbjct: 181 VPEIFEVRGEIYISKKDFFVLNEEMRTTKKKLYSNPRNTVAGLLRSRNQTSKSRISRYLK 240

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           FFVHG+G  SE FA GQYEMLQKMR LGFPVN  ++QA+T  GIVSYY+E   IRS+LPY
Sbjct: 241 FFVHGIGTISEKFADGQYEMLQKMRALGFPVNERIQQAHTLEGIVSYYDETALIRSSLPY 300

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+VYKVD F+LQ+QLGER+RSP W ISHKF++++ ST LL IDIQIGRTG+LTP+AR
Sbjct: 301 DIDGIVYKVDSFTLQQQLGERSRSPIWAISHKFSDEEFSTPLLGIDIQIGRTGMLTPIAR 360

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
            E +N+GG  ++NATLHNE+YIKGLD+SGK++RGGRDIR+GD +LVKRAG+VIPKV D+I
Sbjct: 361 FESINMGGVFVSNATLHNENYIKGLDSSGKIIRGGRDIRIGDMILVKRAGDVIPKVTDVI 420

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + ER  D+Q FSFPS CP+CQS+VVR +NPKTGKL ++H CTGGL C AQQLE LK+FVS
Sbjct: 421 MEERPIDSQMFSFPSSCPVCQSKVVRAVNPKTGKLGSSHYCTGGLMCPAQQLEYLKYFVS 480

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           RDAFNIEGLG++QLDFFFKSEDP+FSIRIPADIFTLQ RQQTS  K+ENI GF  VSVTN
Sbjct: 481 RDAFNIEGLGEKQLDFFFKSEDPSFSIRIPADIFTLQHRQQTSFKKLENIPGFAHVSVTN 540

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           LYDSINKRRNISL+RFIFSLGI HVG EIARSLA++Y SYQNF  EI NI+   ND  +S
Sbjct: 541 LYDSINKRRNISLQRFIFSLGIHHVGIEIARSLAQFYRSYQNFETEIKNILDKKNDADVS 600

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFT 655
           L +V LVGD++AQ+I+ FYQNP N  A+ ALL E  +S    + + + +S + NK+LVFT
Sbjct: 601 LKKVALVGDMVAQSIIAFYQNPENNRAIAALLNEISLSVWDSQEDNSRNSILANKRLVFT 660

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTLQKI RH+AQE V QLGA+VS+ +S KT I++VGDN GSKL KA+QLG++I+NEEQFL
Sbjct: 661 GTLQKITRHQAQEAVKQLGAIVSSTISHKTHIVVVGDNAGSKLNKARQLGIEIVNEEQFL 720

Query: 716 FLLQQY 721
            L+ + 
Sbjct: 721 SLISEQ 726


>gi|227498670|ref|ZP_03928814.1| DNA ligase [Acidaminococcus sp. D21]
 gi|226904126|gb|EEH90044.1| DNA ligase [Acidaminococcus sp. D21]
          Length = 674

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 253/718 (35%), Positives = 385/718 (53%), Gaps = 53/718 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ ++A  +  +L +E+  +   YY    P I D+EYD+L R+  AI   +P+L     P
Sbjct: 1   MTKQEALLKAQALRKELERNSYLYYVEDMPTITDAEYDSLMRQLRAIEAEYPELV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P   +GG       +V H  P LSL   ++ E++++F  R++    K  D  + + +E
Sbjct: 58  DSPTQHVGGYAKPGFTEVHHITPLLSLANAFSPEEMKEFDRRVHEGLPK--DAKVEYVVE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEV 187
           PKIDG   +I YE G+FV AA RGDG  GE+V+  +R I  IP+VLS      IPE+++V
Sbjct: 116 PKIDGLACSIIYENGRFVRAATRGDGMVGENVTENVRTIKNIPKVLSSLPGVPIPELLDV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+ ++ FL LN+E +  G   +ANPRNAA+G LR+L+P     R L FF +G+G  
Sbjct: 176 RGEVYMPRHAFLKLNEERVERGETEFANPRNAAAGSLRQLDPRVTARRSLAFFAYGIGTG 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           +        + + ++   GF    G  +  T     +        R +L YD DG+V KV
Sbjct: 236 A---LDTHNDSMDRLEAYGFTTTEGRTKVATIEEANALIARHGERRKSLGYDTDGVVVKV 292

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +    Q  LG   + PRW +++KF  +QA T L DI IQ+GRTG+LTP A L+PV + G+
Sbjct: 293 NAVWQQNILGATGKDPRWAMAYKFPPEQAETTLRDIVIQVGRTGVLTPTAVLDPVKLSGS 352

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I+ ATLHNED+I             +DIR+GDRV++ +A E+IP+V+ + V +R  + +
Sbjct: 353 TISRATLHNEDFI-----------AEKDIRIGDRVIINKAAEIIPEVLRVAVEKRTGEEK 401

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  P+ CP C   VVR          AA RCT    C A   E L HF SRDA NI+G 
Sbjct: 402 VFHMPAECPECGWPVVRKNGE------AAVRCTNP-HCPALGREGLIHFTSRDAMNIDGC 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G   L    +       ++ P+D++ +             +   G  S  NL  +I   +
Sbjct: 455 GPAVLLQLQERN----LVKDPSDLYLVTADDLM------ELDRMGAKSANNLVRAIAASK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             SL++ +F+LGIRHVGA++AR+LA  Y +     +               L ++P +G 
Sbjct: 505 ENSLDKLLFALGIRHVGAKVARTLAMKYQTMDALMEATQ----------EELAQIPDIGP 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           +IA+++V ++ +P N   +E L +       +G    N +     K +VFTGTL  + R 
Sbjct: 555 VIAESVVTYFGDPGNQDYIERLKELGLNMKMLGTAASNENHPFYGKTMVFTGTLPTLDRA 614

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            AQ    ++GA V++ +S+KTD ++ G +PGSK  KAQ LGV I++E  F  LL+  +
Sbjct: 615 TAQTMAQEVGAKVTSSVSKKTDYVVAGADPGSKYTKAQSLGVTILDEAAFRRLLENKD 672


>gi|303258051|ref|ZP_07344059.1| DNA ligase, NAD-dependent [Burkholderiales bacterium 1_1_47]
 gi|331000674|ref|ZP_08324326.1| DNA ligase [Parasutterella excrementihominis YIT 11859]
 gi|302859070|gb|EFL82153.1| DNA ligase, NAD-dependent [Burkholderiales bacterium 1_1_47]
 gi|329570827|gb|EGG52542.1| DNA ligase [Parasutterella excrementihominis YIT 11859]
          Length = 684

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 382/711 (53%), Gaps = 45/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  +  +  L +E+  H+  YY  + P + D  YD+L +    +   +P       P  
Sbjct: 9   LEAVKLRMEKLAEELEKHNKAYYIDNAPTVSDEIYDSLFQELARLEKEYPQFK---SPVS 65

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           P  ++G  +   L KVTH++P LS+  E  +  +    F  R+ R  +   D +I +  E
Sbjct: 66  PTERVGATVQSELKKVTHAVPMLSIHTETDYTAQGAYDFDARVRRELELTPDQTIDYDCE 125

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I +RYE G  V AA RGDG++GEDV+A ++ I T+P  +    P+I EVRGEV
Sbjct: 126 LKFDGLAINLRYEDGVLVQAATRGDGYTGEDVTANVKTIKTLPLKVDG-FPKIFEVRGEV 184

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            + K  F  LN+E  AVG K +ANPRNAA+G LR+L+      R LNF+ +G G+ SE+ 
Sbjct: 185 IMHKEVFRKLNEEQEAVGAKLFANPRNAAAGSLRQLDSALTAKRNLNFYAYGYGEVSEMP 244

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A  Q  +L  ++  GFPV +      T   + +++ E+  IR  LP+DIDG+VYKV+ F+
Sbjct: 245 ADTQSGLLDYLKSKGFPVISNRIVVQTPEQLEAFHLEVARIRHDLPFDIDGVVYKVNSFA 304

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            QKQLG  +R PRW ++HK+  ++  T++LDI +Q+GRTG LTPVARL+PV +GG  I+N
Sbjct: 305 RQKQLGFVSREPRWAVAHKYPPEEVQTQVLDITVQVGRTGKLTPVARLKPVFVGGTTISN 364

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            +LHNE++++ +            I++GD V+V RAG+VIP++V +I   R  DA+ F  
Sbjct: 365 VSLHNEEFLQNM-----------GIKIGDTVVVHRAGDVIPEIVRVIPELRPKDARDFVM 413

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P FCP+C S   ++   K         C+GGL C AQ+ + + HFVSR A  I+G+G++ 
Sbjct: 414 PEFCPVCGSHAYKEDGEKD------RHCSGGLFCRAQRAQSILHFVSRKAMGIDGIGEKL 467

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
            +   + +     +   ADI+ L   +         +   G  S   L  SI   +  +L
Sbjct: 468 AEQLIEHD----LVTTVADIYRLTVDKLVG------LDRMGQKSAEKLVASIEASKKTTL 517

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ERF++++ I  VG   AR+LA ++ + +   +               L  V  +G   A+
Sbjct: 518 ERFLYAISIPEVGEATARNLASHFGALKPLEEA----------SLEQLQEVEDIGPSGAE 567

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEY 669
            I+ F+  P NI  +  L+            +     +     V TGTL  + R +A + 
Sbjct: 568 NILHFFAEPANIAVINDLMDRGVVWEEGTGTSGQELPLNGLTFVLTGTLPTLSRDEASDI 627

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + + G  VS  +S+KT  ++ G++ GSKL KA+ LGV I++E +   ++ Q
Sbjct: 628 IRKAGGKVSGSVSKKTSYVLAGESAGSKLAKAEALGVNIIDEPELFKMINQ 678


>gi|312127350|ref|YP_003992224.1| DNA ligase, nad-dependent [Caldicellulosiruptor hydrothermalis 108]
 gi|311777369|gb|ADQ06855.1| DNA ligase, NAD-dependent [Caldicellulosiruptor hydrothermalis 108]
          Length = 673

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 237/703 (33%), Positives = 380/703 (54%), Gaps = 47/703 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  
Sbjct: 5   IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     +V H +P LSL  ++N  +L  F  R+         ++  + +E KIDG
Sbjct: 62  RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLG---TSNFDYVVEYKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE G FV  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K+
Sbjct: 119 LSVALEYENGLFVRGATRGDGNIGEDVTENLKTIRSIPLKLKEDIS--IVVRGEVFMPKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
           +F+ LN E        +ANPRNAA+G LR+L+P    +          +  E   +   +
Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNVQWCEKELETHAQ 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ ++ LGF V+                 +++  R  LP++IDG V K+++  L+   G
Sbjct: 237 ALEFLKHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           E A+SPRW +++KF  ++  T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN 
Sbjct: 297 ETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R    + F  P  CP+
Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + V++  +        A+RCTG   C A+    + HFVSRDA +I G+G+  +   F+
Sbjct: 406 CGADVIKFEDE------VAYRCTGV-ECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+ PADI+ L+     +      +  FG  S  NL  +I   +N  L+R I++
Sbjct: 459 R----GLIKTPADIYYLKFEDLVN------LERFGVKSTNNLLKAIQASKNRPLDRLIYA 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G + A++LA++  S  +                  L+ +P  G+ +A+++V F+
Sbjct: 509 LGIRHIGQKAAKTLAEHISSIDDLFTITE----------EQLLSLPDFGEKMAKSVVTFF 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +  +    +E L      ++   +      ++    V TGTL K  R++A+E +  LGA 
Sbjct: 559 RQDQTRHLIERLKAAGVNTVSEKKAKSD-ILKGYTFVLTGTLSKYSRNEAKEILESLGAK 617

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+KT  ++VG +PGSK  KAQQLG+KI+NEE F  L++
Sbjct: 618 VTESVSKKTTAVVVGQDPGSKFTKAQQLGIKILNEEDFEKLVK 660


>gi|229083590|ref|ZP_04215919.1| DNA ligase [Bacillus cereus Rock3-44]
 gi|228699722|gb|EEL52378.1| DNA ligase [Bacillus cereus Rock3-44]
          Length = 669

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 244/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E+A++ +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEKAKQRIEELRDMLNACNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFL---TE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPTVRVGGAVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDSANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+FV  A RGDG +GED++  ++ I  IP  L   +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFVQGATRGDGVTGEDITQNLKTIKAIPLRLKEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEAVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLADVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                + L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IVSHSDSLNFLGELGFKTNPNRRTCETIEDVITYVEEWQEKRPDLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV+++ ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVLFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC    AC AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPTCDSELVRLEEE------VALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+    A  IR  AD++ L + Q         +  FG+ S + L  +I   +  SL
Sbjct: 455 ITQLFE----ADYIRTFADLYPLTQEQL------LQLERFGEKSASKLVQAIEASKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+LA+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTLAEHFETMDLLVKATE----------EELKEINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           +IV ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SIVTYFDNEDVLELLQQFKEYGVNMTYKGIKRADLQNVESYFAGKTIVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ + +LG  V+  +S+ TD+++ G+  GSKL +A++  +++ NEE+FL  L +
Sbjct: 615 AKKKIEELGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNIEVWNEERFLQELNK 669


>gi|326796428|ref|YP_004314248.1| DNA ligase [Marinomonas mediterranea MMB-1]
 gi|326547192|gb|ADZ92412.1| DNA ligase [Marinomonas mediterranea MMB-1]
          Length = 680

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 246/708 (34%), Positives = 382/708 (53%), Gaps = 45/708 (6%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           + +L  +++ +   Y+    P + DSEYD L +    I    P   +   P+ P  ++G 
Sbjct: 12  VKTLVSQLNDYSYSYHVKDDPKVPDSEYDRLYKALQLIELKNPQWIQ---PDSPTQRVGE 68

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           + +     V H++  LSL+  ++ + + +F  R+ +   +  D  I F  EPK+DG  I+
Sbjct: 69  KPDTGFANVEHTVAMLSLDNAFDDDSMLEFNERVKKLLNESAD--IEFCCEPKLDGLAIS 126

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKNDFL 199
           +RYE G  V    RGDG SGED+++ IR I T+P    +   P ++EVRGE+Y+ K  F 
Sbjct: 127 LRYEDGVLVRGVTRGDGLSGEDITSNIRTIHTVPLKLRTDTPPPVVEVRGEIYMPKEGFE 186

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFAKGQYEM 257
            LN        K + NPRNAA+G LR+L+P    +R L    + +G +      +  Y+ 
Sbjct: 187 VLNALAKQKDEKLFVNPRNAAAGSLRQLDPKITASRPLVLCAYSIGFSEGWTQPQSHYDG 246

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++   GF +N+ + +     G +SYY ++   R  L YDIDG+VYKVD  + Q++LG 
Sbjct: 247 LIQLGDWGFKINDRMERVTGIQGCLSYYEKLNQDRPALTYDIDGIVYKVDSIAKQQELGF 306

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            AR+PRW I+ KF  ++  T++  ID Q+GRTG +TPVARLEPV +GG  ++NATLHN+D
Sbjct: 307 IARAPRWAIARKFPAQEEITQIKGIDFQVGRTGAITPVARLEPVFVGGVTVSNATLHNKD 366

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I  L            +RV D V+++RAG+VIP+VV +++ +R        +P  CP+C
Sbjct: 367 EIARL-----------GVRVNDWVIIRRAGDVIPQVVQVVLEKRPEGTVSVEYPDSCPVC 415

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S   +          A  RC GGL C+AQ  E LKHFVSR A +I+GLG + ++    +
Sbjct: 416 GSHTEQVEGE------AVIRCAGGLVCNAQLKESLKHFVSRKAMDIDGLGDKLIEQLVDN 469

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           +     ++ PADI+ L  ++     ++ ++   GD SV  L  SI+  +N    RFI++L
Sbjct: 470 K----LVQTPADIYKLHEKEA----RLLDLERMGDKSVDKLLTSIDASKNTLFNRFIYAL 521

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG   A++L K+Y +     Q           D  SLI+V  VG I+AQ +  F++
Sbjct: 522 GIREVGEATAKALTKHYKALDALIQA----------DQESLIQVSDVGPIVAQHVQRFFE 571

Query: 618 NPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
             +NI  +  L++         E        +  K  V TGTL +  R + +E + QLGA
Sbjct: 572 QEQNIVVINELIELGIQWDAPAEAAGESEQPLLGKTYVVTGTLNEFTREEIKEKLQQLGA 631

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            VS  +S KTD ++ G+  GSKL KAQ L V +++E+  +  L++   
Sbjct: 632 KVSGSVSGKTDCLVAGEKAGSKLAKAQSLNVPVLDEQGIIAFLKEQGA 679


>gi|332977611|gb|EGK14379.1| NAD-dependent DNA ligase LigA [Psychrobacter sp. 1501(2011)]
          Length = 695

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 256/726 (35%), Positives = 391/726 (53%), Gaps = 47/726 (6%)

Query: 2   KKRQLIPIEALSIEQ--ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59
           +  ++  I++L+ EQ     ++ +L  E+  H++ YY   +P I D+EYD L+     + 
Sbjct: 10  QTTKMNAIKSLNQEQQDIVAKMRTLITEVRKHNNAYYVMDEPTISDNEYDQLRLSLIELE 69

Query: 60  HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
             +PDL +S   + P   +G     S  +V H IP LSL  ++N E+L +F+ R+     
Sbjct: 70  ERYPDLTQS---DSPTASVGDNPLPSFSQVQHDIPMLSLGNVFNKEELAEFMRRVNDRLS 126

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
             + N   + +E K+DG  ++++Y+ G+FV    RGDG +GED++  ++ I  IP VL  
Sbjct: 127 SNNKNP-AYEMELKLDGLAVSLKYQNGRFVRGVTRGDGQTGEDITQNVKTINNIPLVLEA 185

Query: 180 NIP-EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN 237
               E++EVRGEV + K  F  LN E   V  K +ANPRNAA+G LR+L+P     R L 
Sbjct: 186 AFDIEVLEVRGEVLMPKAGFERLNREAKQVDGKIFANPRNAAAGSLRQLDPAVAANRPLA 245

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           F+ + + +        Q E L  ++ +GF   + V+  N      +YY  +   RS LP+
Sbjct: 246 FYAYSVNQGLPEHIVNQSEALDWLKEIGF-TVSAVKVVNDLEEAQAYYESVIEERSGLPF 304

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG V KVD   LQ +LG  +R PRW  ++KF  +   T+L  I+ Q+GRTG +TPV +
Sbjct: 305 EIDGTVIKVDNLQLQSELGYLSREPRWATAYKFPAETVMTKLNAIEWQVGRTGQITPVGK 364

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV +GG  ++N TLHN   I+ L           D+R GD V V RAG+VIPKV  + 
Sbjct: 365 LEPVQVGGVTVSNVTLHNIGEIQRL-----------DVRAGDTVSVHRAGDVIPKVTRVW 413

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
              R  D+QP + P+ CP+C S VV           A  RCTG L C AQQ E L HFVS
Sbjct: 414 HELRPEDSQPVTLPTHCPVCDSPVVLPEGE------ALARCTGELFCPAQQQEALIHFVS 467

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A +I+GLG++ L  FF+       ++  ADI+ L++ ++     + N    G+ SV N
Sbjct: 468 RKAMDIDGLGERWLISFFEQ----GIVKTVADIYHLEQHRE----ALINFEKLGEKSVNN 519

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L  +I   +  +L RFI+++GI+ VG   A++LAK++                      S
Sbjct: 520 LLAAIENSKKTTLSRFIYAIGIKGVGETTAQNLAKHFGDLPALMDA----------SIES 569

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTG 656
           L  VP +G I A+ I +F++   N+  +EAL++         +       ++ +  V TG
Sbjct: 570 LEAVPDIGTITAEQIYDFFRAKHNVEVIEALIEAGVHWEKVEQVVAEGLPLDGETWVITG 629

Query: 657 TL--QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TL    + R  A+  +  LGA VS  +S KT  ++ G+  GSKL KAQQLGV+++ E +F
Sbjct: 630 TLVESGMSRDDAKSKLQALGAKVSGSVSAKTSALLAGEKAGSKLTKAQQLGVRVVEEAEF 689

Query: 715 LFLLQQ 720
           L ++Q+
Sbjct: 690 LQMIQE 695


>gi|260426307|ref|ZP_05780286.1| DNA ligase, NAD-dependent [Citreicella sp. SE45]
 gi|260420799|gb|EEX14050.1| DNA ligase, NAD-dependent [Citreicella sp. SE45]
          Length = 754

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 305/758 (40%), Positives = 441/758 (58%), Gaps = 60/758 (7%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +EAL+  QAR EL+ L + ++  +  Y+    P I D++YDALK R  AI   FP+L 
Sbjct: 9   IEVEALTETQARDELARLAEVLAQANRAYHTEDAPEISDADYDALKLRNIAIEERFPELK 68

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R    + P  ++G  +     KV HS   +SL   +  +++  F   I R+    DD  +
Sbjct: 69  RE---DSPSEQVGAPLAEGFAKVRHSQRMMSLANAFADDEVTDFDRGIRRYLGLADDARL 125

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            FT EPKIDG  +++RYE G+ V AA RGDG  GE+V+A  R I  IP  L    PE++E
Sbjct: 126 PFTAEPKIDGLSLSLRYENGELVQAATRGDGAVGENVTANARTIDDIPATLEGA-PEVLE 184

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+S  DF ALN+   A G K +ANPRNAA+G LR+L+      R L FF +  G+
Sbjct: 185 VRGEVYMSHEDFAALNERQEARGGKRFANPRNAAAGSLRQLDAAITRERPLRFFAYAWGE 244

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            SE  A  Q   ++++  LGF  N   R  +    ++++Y ++++ R+TL YDIDG+VYK
Sbjct: 245 VSEPLATTQMGAIERLEALGFQTNPLTRLCDGPQEMLAHYAQIEAQRATLGYDIDGVVYK 304

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ +LQ++LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG
Sbjct: 305 VDDLALQQRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGG 364

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHNEDYI G DASG  +R G+DIRVGD V V RAG+VIPKV D+ +++R  +A
Sbjct: 365 VVVSNATLHNEDYIAGRDASGNPIRDGKDIRVGDWVQVYRAGDVIPKVADVDLDKRPEEA 424

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +P++FP  CP C S  +R+         A  RCTGGL C AQ +E+LKHFVSR AF+IEG
Sbjct: 425 EPYAFPQTCPECGSEAIREEG------DAVRRCTGGLVCPAQAVEKLKHFVSRAAFDIEG 478

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +Q++ F +       I  PA+IFTL+ R  +   +++N  G+G+ S  NL+D+I++R
Sbjct: 479 LGAKQVEQFHRD----GWISEPAEIFTLRTRYGSGIQQLKNREGWGEKSAQNLFDAIDER 534

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN------------- 592
           R I L R IFSLGIRHVG  +A  LA++Y S+    + ++                    
Sbjct: 535 RTIGLGRVIFSLGIRHVGEVVANDLARHYASWDKLIEAVDAARPAAERYRQAETAVEAER 594

Query: 593 -------------------------------DDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
                                            W  L+ +  +G  +A ++V        
Sbjct: 595 KTAAAEGRRARLKETRDAAWEAEPPVSAGARAAWEDLVGIDGIGQTVAVSLVTSLGQTTE 654

Query: 622 ICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
             +V+ L+ E+ +           S +  K +VFTG L+K+ R +A+     LGA VS  
Sbjct: 655 RASVDRLIAELRTIEAPERPLTDGSPVAGKTVVFTGALEKMTRAEAKARAEALGAKVSGS 714

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +S+KTDI++ G   GSK  KA++LG+++M+E+ +L L+
Sbjct: 715 VSKKTDIVVAGPGAGSKEAKARELGIELMDEDAWLALI 752


>gi|229003296|ref|ZP_04161126.1| DNA ligase [Bacillus mycoides Rock1-4]
 gi|228757914|gb|EEM07129.1| DNA ligase [Bacillus mycoides Rock1-4]
          Length = 669

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 248/715 (34%), Positives = 391/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E+A++ +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEEAKQRIEELRDMLNAFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLIE--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD+++ +  E
Sbjct: 58  DSPTVRVGGAVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDSNVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+FV  A RGDG +GED++  ++ I  IP  L   +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFVQGATRGDGVTGEDITQNLKTIKAIPLRLKEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LNDE    G   +ANPRNAA+G LR+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNDEKEQNGEAVFANPRNAAAGSLRQLDPKIAAKRNLSMFVYGLADVKEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IASHSESLNFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPNLNYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ  LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQDSLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVIVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC    AC AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACDSELVRLEEE------VALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+    A  IR  AD++ L + Q         +  FG+ S + L  +I   +  SL
Sbjct: 455 ITQLFE----ADYIRTFADLYPLTQEQL------LQLERFGEKSASKLVQAIETSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+LA+++ +  +  +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTLAEHFETMDHLVKATE----------EELKEINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           +IV ++ N   +  ++   +       +  K     N++S    K +V TG L+ + R +
Sbjct: 555 SIVTYFDNEDVLELLQQFKEYGVNMTYKGIKRADLQNIASYFAGKTIVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ + +LG  V+  +S+ TD+++ G+  GSKL +A++  +++ NEE+FL  L +
Sbjct: 615 AKKKIEELGGKVAGSVSKSTDLVVAGEAAGSKLAQAEKHNIEVWNEERFLQELNK 669


>gi|154248881|ref|YP_001409706.1| DNA ligase, NAD-dependent [Fervidobacterium nodosum Rt17-B1]
 gi|190359256|sp|A7HJG6|DNLJ_FERNB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|154152817|gb|ABS60049.1| DNA ligase, NAD-dependent [Fervidobacterium nodosum Rt17-B1]
          Length = 681

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 236/716 (32%), Positives = 382/716 (53%), Gaps = 49/716 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E+ ++E+  L +EI YH+  YY  ++P+I D EYD L +R   +   +P+L     P
Sbjct: 1   MVSEKIKQEVEKLRKEIEYHNYRYYVLAQPVISDEEYDKLMKRLMELEEKYPELK---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++      V HS P LSL+  +N  ++R F  RI +  +      + +  E
Sbjct: 58  DSPTQRVGGQLIEGFETVEHSEPMLSLDNTYNENEIRNFHERIRKVVR-----DVQYVAE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I +RYE G  V A  RGDG  G+DV+A ++ + +IP  L   +   IEVRGE+
Sbjct: 113 LKIDGVSIALRYENGLLVRAITRGDGLRGDDVTANVKTVKSIPLRLPEPL--TIEVRGEI 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           ++    F   N +    G  P+ANPRNA +G L  L+P+    R L+ F++ + K  +  
Sbjct: 171 FMPVQYFEEFNRQREEEGLLPFANPRNATAGTLHLLDPSQVAQRKLDSFMYYIVKPQQYD 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q++ L+ +  L F VN   +  ++   ++ Y+ E    R  L Y IDG+V KV++F 
Sbjct: 231 LKTQWDALKFLEKLHFKVNPHSKLLSSIEEVIDYWKEWTEKRKKLEYWIDGVVVKVNDFE 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  A+SPRW I+ KF  +Q  T++L+I  Q+GRTG +TPVA  EPV + G+++  
Sbjct: 291 QQNELGWTAKSPRWAIAFKFPAQQVRTKVLNITFQVGRTGTITPVAEFEPVELEGSIVKR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DYIK             DIRVGD V +++AG +IP++  ++   R  D      
Sbjct: 351 ASLHNFDYIK-----------ENDIRVGDYVFIEKAGGIIPQISYVLKELRDGDEIETVP 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C   V ++          A++C     C A+    ++ FVSR A +I+GLG + 
Sbjct: 400 PEKCPECGGPVGKESGE-----YVAYKCLNP-HCPAKLKRHIEVFVSRQAMDIQGLGPKI 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +         A  ++  AD++ L      +   +  I G G   ++N+   I K +   +
Sbjct: 454 ISKIVD----AGLVKDIADLYYL------NIFDLAQISGLGPKMISNILSEIEKSKQNPI 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +  LGI  VG +IA+ LAK Y S +  ++           D   L  +  +G+ IA+
Sbjct: 504 EKLLVGLGIPGVGEKIAKVLAKKYKSMEELSKA----------DIKELSEIEGIGEDIAK 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            IVE++ +P+    +E L K    ++   E   S+ ++      TGTL+   R + + ++
Sbjct: 554 NIVEYFNSPKTKEILEKLRKAGV-NLESAETTTSNILDGLTFCVTGTLENFSREEIKRFI 612

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
             LG   +  L++KTD ++VG NPGSKLEKA++ GVK++NE++FL +L++    L+
Sbjct: 613 ESLGGHFTDNLTKKTDYLLVGTNPGSKLEKAKKFGVKVLNEQEFLEMLEKKGVELK 668


>gi|226941791|ref|YP_002796865.1| DnlJ [Laribacter hongkongensis HLHK9]
 gi|254781355|sp|C1D4R5|DNLJ_LARHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226716718|gb|ACO75856.1| DnlJ [Laribacter hongkongensis HLHK9]
          Length = 692

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 245/724 (33%), Positives = 379/724 (52%), Gaps = 67/724 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++        + L   +  ++  YY    P + D+EYD L R  +A+  A P+LA     
Sbjct: 1   MTDLNPTARAAGLRALLHRYNHEYYVLDAPSVPDAEYDRLFRELEALEAAHPELA---SA 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI----------EDLRKFITRIYRFWQKK 121
           + P  ++GG    +   VTH +P LSL  +++            +L  F  R+       
Sbjct: 58  DSPTRRVGGAPLAAFASVTHRLPMLSLNNVFSDMQDSDPAGRHAELAAFDQRVRDGLGL- 116

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
             + + + +EPK DG  +++ YE G  V  A RGDG +GE+V+  +R + +IP  L    
Sbjct: 117 --DEVEYAVEPKFDGLAVSLVYEHGVLVQGATRGDGETGENVTENLRTVRSIPLRLENAP 174

Query: 182 ----------PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PT 230
                     P  +EVRGEV + K DF  LN E  A G K +ANPRNAA+G LR+L+   
Sbjct: 175 GDDLFAPAVVPARLEVRGEVLMLKRDFERLNSEQDAAGLKRFANPRNAAAGSLRQLDSRI 234

Query: 231 DITRYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289
             +R L FF + + +   +         +  +  LG PV+          G+   Y  M 
Sbjct: 235 TASRRLTFFAYAVAEADGVSLPATHSATMDWLAGLGLPVSRQRSVVRGLAGLTGAYEAML 294

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
           + R+ LP+DIDG+VYKV+  S Q +LG  +R+PR+ ++HKF  ++A T + DI +Q+GRT
Sbjct: 295 AQRAGLPFDIDGVVYKVNRLSEQARLGFVSRAPRFAVAHKFPAEEALTVVEDITVQVGRT 354

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G +TPVARL+PV +GG  +TNATLHNED ++            +D+ VGD V+V+RAG+V
Sbjct: 355 GAITPVARLQPVFVGGVTVTNATLHNEDEVRR-----------KDVHVGDTVIVRRAGDV 403

Query: 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
           IP+VV ++   R P A+ F  P  CP+C S +VR+ +       A  RC+GGL CSAQ  
Sbjct: 404 IPEVVSVLAERRPPQARAFEMPLVCPVCGSHIVREADE------AVARCSGGLYCSAQHK 457

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
           + L+HF SR A ++EGLG++ +D        A  +  PAD+F L +        +  +  
Sbjct: 458 QALQHFASRKALDVEGLGEKLVDQLVD----AGLVHTPADLFALDQ------PALARLER 507

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
            GD S  NL  +++  R+ +L RF+++LGIR+VG   AR LA+++ +             
Sbjct: 508 MGDKSAENLVRALDACRHTTLARFVYALGIRNVGEATARDLARHFGTLDALMAA------ 561

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--I 647
               D   L+  P VG I+A++IV+F+    N   V+ALL              +    +
Sbjct: 562 ----DQDMLMTAPDVGPIVARSIVDFFAEAHNREVVDALLAAGVSWPVVETVTSAGVAGV 617

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
             K  V TGTL  + R  A+  +   G  V+  +S+KT  ++ G+  GSKL+KA +LG+ 
Sbjct: 618 SGKTFVLTGTLPTLGRDDAKARIEAAGGKVTGSVSKKTHYVVAGEAAGSKLDKAHELGIT 677

Query: 708 IMNE 711
           +++E
Sbjct: 678 VLDE 681


>gi|262379150|ref|ZP_06072306.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164]
 gi|262298607|gb|EEY86520.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164]
          Length = 682

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 252/718 (35%), Positives = 382/718 (53%), Gaps = 47/718 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S      ++  L Q I+ H+  YY   +P I D+EYD+L  +  A+   +PDL +++   
Sbjct: 7   STAGIVTQMRQLIQLIAQHNHAYYVMDQPSISDNEYDSLFHQLKALEEQYPDLVQNDT-- 64

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG+       V H++P LSL  ++N EDL  F  R+           + + +E 
Sbjct: 65  -PTRRVGGQALSKFMSVRHAVPMLSLGNVFNKEDLFAFARRVEERL---PGQQVKYEVEL 120

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEVRG 189
           K+DG  I++ YE G+ V    RGDG +GED++  ++ I  +P+ L  +    P+++EVRG
Sbjct: 121 KLDGLAISLWYENGELVRGVTRGDGETGEDITQNVKTIRNLPKYLYSDQAAIPKLLEVRG 180

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSE 248
           EV I K  FL LN E  A G K +ANPRNAA+G LR+L+P         F+ +G+ +   
Sbjct: 181 EVLIPKTGFLKLNAENEAKGEKIFANPRNAAAGSLRQLDPGIAAARPLAFYAYGIAQCEP 240

Query: 249 IFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   E L  +R LGF +       ++   +   Y ++   R+ L  +IDG+V KVD
Sbjct: 241 EHHLNSMTESLHWLRDLGFEIAERQFLCDSIEEVQRRYEKIMEERADLGVEIDGMVVKVD 300

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               QKQLG  +R PRW  ++KF    A T + +ID Q+GRTGILTPVARL PV +GG  
Sbjct: 301 SLKQQKQLGFLSREPRWATAYKFPAIAALTTVENIDWQVGRTGILTPVARLNPVFVGGVT 360

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R   A+ 
Sbjct: 361 VSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPDTAEV 409

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
            + P  CP+C S VV           A  RC+G L C+AQ++E ++HFVSR A +IEGLG
Sbjct: 410 INLPETCPVCASPVVMPEGE------ALARCSGELYCAAQRIESIRHFVSRKAMDIEGLG 463

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++     E     ++  +DI+ L + +      +  I   G+ SV NL ++I + + 
Sbjct: 464 DRWVESLLHLE----LLKDVSDIYHLHQHRN----TLLGIEKMGEKSVQNLINAIEQSKK 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RFI++LGIR VG   AR LA  + + +   Q           D  SL +VP VGDI
Sbjct: 516 TTLARFIYALGIRGVGETTARMLANSFQTLEALQQA----------DVDSLKKVPDVGDI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            A+ I +F++   N+  ++ LL            +    +  +  V TGTL+ + R +A 
Sbjct: 566 TAEWIYDFFRAEHNLEVIDRLLAAG-IHWDAPIASTRQPLNGESWVLTGTLEHLTREQAT 624

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           + +  LGA VS  +S KT  ++ G+  GSKLEKAQ+L ++ +NE+QF+ L++ Y   +
Sbjct: 625 QMLQALGARVSGSVSAKTKCVVAGEKAGSKLEKAQKLNIQTLNEKQFIELMETYGQVI 682


>gi|255318624|ref|ZP_05359855.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82]
 gi|255304306|gb|EET83492.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82]
          Length = 678

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 252/718 (35%), Positives = 382/718 (53%), Gaps = 47/718 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S      ++  L Q I+ H+  YY   +P I D+EYD+L  +  A+   +PDL +++   
Sbjct: 3   STAGIVTQMRQLIQLIAQHNHAYYVMDQPSISDNEYDSLFHQLKALEEQYPDLVQNDT-- 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG+       V H++P LSL  ++N EDL  F  R+           + + +E 
Sbjct: 61  -PTRRVGGQALSKFMSVRHAVPMLSLGNVFNKEDLFAFARRVEERL---PGQQVKYEVEL 116

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEVRG 189
           K+DG  I++ YE G+ V    RGDG +GED++  ++ I  +P+ L  +    P+++EVRG
Sbjct: 117 KLDGLAISLWYENGELVRGVTRGDGETGEDITQNVKTIRNLPKYLYSDQAAIPKLLEVRG 176

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSE 248
           EV I K  FL LN E  A G K +ANPRNAA+G LR+L+P         F+ +G+ +   
Sbjct: 177 EVLIPKTGFLKLNAENEAKGEKIFANPRNAAAGSLRQLDPGIAAARPLAFYAYGIAQCEP 236

Query: 249 IFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   E L  +R LGF +       ++   +   Y ++   R+ L  +IDG+V KVD
Sbjct: 237 EHHLNSMTESLHWLRDLGFEIAERQFLCDSIEEVQRRYEKIMEERADLGVEIDGMVVKVD 296

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               QKQLG  +R PRW  ++KF    A T + +ID Q+GRTGILTPVARL PV +GG  
Sbjct: 297 SLKQQKQLGFLSREPRWATAYKFPAIAALTTVENIDWQVGRTGILTPVARLNPVFVGGVT 356

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++N TLHN   I  L           D+R+GD V V R G+VIPKV  +    R   A+ 
Sbjct: 357 VSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPDTAEV 405

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
            + P  CP+C S VV           A  RC+G L C+AQ++E ++HFVSR A +IEGLG
Sbjct: 406 INLPETCPVCASPVVMPEGE------ALARCSGELYCAAQRIESIRHFVSRKAMDIEGLG 459

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++     E     ++  +DI+ L + +      +  I   G+ SV NL ++I + + 
Sbjct: 460 DRWVESLLHLE----LLKDVSDIYHLHQHRN----TLLGIEKMGEKSVQNLINAIEQSKK 511

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RFI++LGIR VG   AR LA  + + +   Q           D  SL +VP VGDI
Sbjct: 512 TTLARFIYALGIRGVGETTARMLANSFQTLEALQQA----------DVDSLKKVPDVGDI 561

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            A+ I +F++   N+  ++ LL            +    +  +  V TGTL+ + R +A 
Sbjct: 562 TAEWIYDFFRAEHNLEVIDRLLAAG-IHWDAPIASTRQPLNGESWVLTGTLEHLTREQAT 620

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           + +  LGA VS  +S KT  ++ G+  GSKLEKAQ+L ++ +NE+QF+ L++ Y   +
Sbjct: 621 QMLQALGARVSGSVSAKTKCVVAGEKAGSKLEKAQKLNIQTLNEKQFIELMETYGQVI 678


>gi|327399096|ref|YP_004339965.1| DNA ligase [Hippea maritima DSM 10411]
 gi|327181725|gb|AEA33906.1| DNA ligase [Hippea maritima DSM 10411]
          Length = 667

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 247/712 (34%), Positives = 400/712 (56%), Gaps = 50/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++  +A++ +  L +++ YH+  YY    PII DSEYD + +    +  ++P      D 
Sbjct: 1   MNDREAKERIEQLRKKLHYHNYRYYVLDDPIISDSEYDMMLKELKELEESYPQF---YDE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG       KV H IP LSLE  ++  D+R+F  ++ RF +  +D  I +++E
Sbjct: 58  NSPTVRVGGAPLNKFEKVEHKIPMLSLEDGFDDNDIREFDRKVKRFLKLPEDKKIAYSVE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-EVRGE 190
           PK DG  I + YE GK   A+ RGDG+ GE+V+  I+ I  +P VL ++ P +  +V+GE
Sbjct: 118 PKFDGLSIDLIYENGKLTVASTRGDGYVGENVTQNIKTIRNVPLVLPIDTPPMYLDVQGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL--GKTS 247
           V ++K +F  +N E +  G   +ANPRNAA+G +R+L+P +   R L   ++ +   +  
Sbjct: 178 VLLTKEEFERINQERLKNGLNVFANPRNAAAGSVRQLDPKETAKRNLIMIMYYIRQIEGY 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +     Q++ L+ ++ +GFP ++  R        + Y  E++  R TLPY++DG+V KVD
Sbjct: 238 KRKILSQHDALEALKEMGFPTSSLNRLVVGIEEAIEYKKELEIKRETLPYELDGIVIKVD 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F LQ+ LG   +SPRW I+ KF  +QA+T++ DI++ +GRTGILTPVA LEPVNIGG +
Sbjct: 298 DFELQESLGATTKSPRWAIAFKFPAQQATTKIKDIEVNVGRTGILTPVAILEPVNIGGVV 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A+LH  D I+            +DIR+GD V V+RAG+VIP+VV  + + R    + 
Sbjct: 358 VSRASLHTMDEIEK-----------KDIRIGDVVFVQRAGDVIPEVVKPVKDLRDGSEKK 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP+C SRV         K  A +RC+  + C     E +KHFVSR A NI+G G
Sbjct: 407 FVMPEKCPVCGSRV--------VKDGAYYRCSN-INCPKVLKESIKHFVSRKAMNIDGFG 457

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++           ++  ADI+ L +           +   G+    NL  SI + + 
Sbjct: 458 DKLIEQLVDK----GIVKNIADIYELDKETLMG------LDRVGEKLAENLISSIQRSKG 507

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +  +FI++LGIRHVG  +A+ LA+ + + +N  +               L+ +  +G+ 
Sbjct: 508 TTFAKFIYALGIRHVGEFVAKLLAERFKNLENLKKATK----------DELLAIDGIGEE 557

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IA ++V F+  P+N+  ++ LL        + +++  S I  K  VFTGTL K  R   +
Sbjct: 558 IADSVVSFFSEPKNLQTIDKLLYYGIHFEDKTKEH--SRIAGKSFVFTGTLSK-PREYFK 614

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E + + G +V   +S+  D ++VG+NPGSKL+KA+Q GV +++EE+   LL+
Sbjct: 615 ELIEERGGIVRNSVSKNLDYLVVGENPGSKLKKAKQNGVSVISEEELYRLLE 666


>gi|293401241|ref|ZP_06645385.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305367|gb|EFE46612.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 662

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 238/702 (33%), Positives = 375/702 (53%), Gaps = 47/702 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++ + +L +++  +   YY   +P + D+EYD   +    +   +P      DPN   
Sbjct: 2   DVQQRILALRKQLDTYAYEYYVLDQPSVPDAEYDQAYQELLKLEDTYPQY---RDPNSIT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +  +  KVTH    LSL   +N+EDL+ F  R+           + + +E K+D
Sbjct: 59  QRVGGVVLDAFTKVTHKQQMLSLSNAFNLEDLQAFDERVRSIV-----PKVSYVVELKMD 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I++ Y  G+FV A  RGDG  GEDV+  +R I +IP    +     +EVRGEV++ K
Sbjct: 114 GLAISLHYHDGRFVQAVTRGDGFVGEDVTNNVRTIASIPMH--IERMGDVEVRGEVFMPK 171

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN +    G   +ANPRNAA+G +R+L+     +R L+ F++          +  
Sbjct: 172 KSFAELNAQREKNGEDVFANPRNAAAGSIRQLDSKIAASRKLDAFLYYYEDALGAGIQTH 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L+ M  L   VN   R  N+   + S+  EM   R+ LPY+IDG+V KV+E +  +Q
Sbjct: 232 EEALETMEQLHIKVNPLRRVCNSMDEVWSFIQEMSEQRNDLPYEIDGMVIKVNELTAWEQ 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   ++PR+ I++KF  ++  T+LLDI + +GRTG +TP A L PV + G  ++ A LH
Sbjct: 292 LGTTVKAPRYAIAYKFPAEEVVTKLLDIVLTVGRTGRITPNAVLAPVRVAGTSVSAAQLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED IK            +DIR+ D V+V++AG++IP+VV  +++ R+     + FP  C
Sbjct: 352 NEDMIK-----------EKDIRIQDDVVVRKAGDIIPEVVGPLLDRRNGTQARYVFPKEC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S +VR  +       AAH C     C A+ +E + HF SRDA +I+ LG ++++FF
Sbjct: 401 PVCGSALVRLSDE------AAHYCIN-QDCPARVVESIIHFASRDAMDIDTLGDKKVEFF 453

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            K       +    DI+ L+  ++     I  + GF + S   L D+I   +   LE  +
Sbjct: 454 HKE----GLLNTIEDIYHLKDHKE----TILQMEGFKERSYQKLIDAIEASKQNPLEDLV 505

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           + LGIR VG + A+ LAK++L+ +                   L+ +  +GDI AQ+IV 
Sbjct: 506 YGLGIRQVGKKAAKVLAKHFLTMEKLMAASE----------EELVAIKDIGDITAQSIVA 555

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F++ P+N+  ++ L           E    S    K +V TG+LQ++ R++A+E +  LG
Sbjct: 556 FFREPKNVELIDHLRGFGLRMDSEEEIIQESMFTGKTVVLTGSLQQMTRNEAKELLESLG 615

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           A VS  +S+KTD++I G+  GSKL KAQ LGV  M+E  FL 
Sbjct: 616 ANVSGSVSKKTDLVIYGEAAGSKLTKAQSLGVATMDEATFLQ 657


>gi|238650378|ref|YP_002916230.1| NAD-dependent DNA ligase LigA [Rickettsia peacockii str. Rustic]
 gi|257096313|sp|C4K0T1|DNLJ_RICPU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|238624476|gb|ACR47182.1| NAD-dependent DNA ligase LigA [Rickettsia peacockii str. Rustic]
          Length = 689

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 271/712 (38%), Positives = 418/712 (58%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S E+A+K L  L  +I+ ++  YY    P++ DSEYD L      +   FP L   
Sbjct: 4   IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  K+G ++     KV H +P LSL   ++ +D+R F+ RI  F +  +   I  
Sbjct: 64  ---NSPSKKVGAKIANKFAKVMHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPI-- 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G     A RGDG+ GED++A I+ I   P     N+PE +EVR
Sbjct: 119 FCEPKIDGLSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPH-KIDNVPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN E    G+  +ANPRNAA+G LR+L+ +    R L +FV+  G T 
Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++  GF +N   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  
Sbjct: 298 DFALQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIPK++ +  ++R  D + 
Sbjct: 358 VSRATLHNFQEIAR-----------KDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FC  C S++               RC  GL C AQ  ER+ HFVS++A +IEGLG
Sbjct: 407 FDTPLFCLSCNSKLHY------TPEDIIIRCDNGLNCPAQNYERIHHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F          I  P DIF L+ +  +S  K+EN+ G+G  SV NL+ +I K +N
Sbjct: 461 RKQVEFLIDK----GLISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G + A+ LA+ + SY NF  ++  +  +  D +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLARAFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I   I++F+    NI  ++ L + ++    +  +  SS + +K +VFTG+L  I R +A+
Sbjct: 577 ILVDIIDFFDVKENIELIKKLGEILNIEDYKETREQSS-LTDKIVVFTGSLPTISRAEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               +LGA V+  +S  TD+++ G + GSKL+KA++L +KI++EE++L L++
Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVAGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687


>gi|15893019|ref|NP_360733.1| NAD-dependent DNA ligase LigA [Rickettsia conorii str. Malish 7]
 gi|81527939|sp|Q92GM7|DNLJ_RICCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|15620219|gb|AAL03634.1| DNA ligase [Rickettsia conorii str. Malish 7]
          Length = 689

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 270/712 (37%), Positives = 418/712 (58%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S E+A+K L  L  +I+ ++  YY    P++ DSEYD L      +   FP L   
Sbjct: 4   IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  K+G ++     KVTH +P LSL   ++ +D+R F+ RI  F +  +   I  
Sbjct: 64  ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPI-- 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G     A RGDG+ GED++A I+ I   P     N+PE +EVR
Sbjct: 119 FCEPKIDGLSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPH-KIDNVPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN E    G+  +ANPRNAA+G LR+L+ +    R L +FV+  G T 
Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++  GF +N   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  
Sbjct: 298 DFALQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIPK++ +  ++R  D + 
Sbjct: 358 VSRATLHNFQEIAR-----------KDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FC  C S++               RC  GL C AQ  ER++HFVS++A +IEGLG
Sbjct: 407 FDTPLFCLSCNSKLHY------TPEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F          I    DIF L+ +  +S  K+EN+ G+G  SV NL+ +I K +N
Sbjct: 461 RKQVEFLIDK----GLISNLLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G + A+ LA+ + SY NF  ++  +  +  D +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLRTNEPDIYQKLKNLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I   I++F+    NI  ++ L + ++    +  +  S  + +K +VFTG+L  I R +A+
Sbjct: 577 ILVDIIDFFDVKENIELIKKLGEILNIEDYKETREQSG-LTDKIVVFTGSLPTISRAEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               +LGA V+  +S  TD+++ G + GSKL+KA++L +KI++EE++L L++
Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVAGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687


>gi|325121133|gb|ADY80656.1| DNA ligase [Acinetobacter calcoaceticus PHEA-2]
          Length = 679

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 259/720 (35%), Positives = 380/720 (52%), Gaps = 47/720 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++     +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +PDL +S   
Sbjct: 1   MATTSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDLVQS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E
Sbjct: 58  DSPTTKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188
            K+DG  I++ YE G  V    RGDG +GED++  ++ I  +P+VL  +  EI   +EVR
Sbjct: 115 LKLDGLAISLWYENGLLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPHLLEVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247
           GEV + K+ F  LN E  A G K +ANPRNAA+G LR+L+P         F+ +G+ +  
Sbjct: 175 GEVLMPKSGFEKLNAEQEAKGDKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 234

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  RS L  +IDG+V KV
Sbjct: 235 PNHGLTTMHDSLQWLTKLGFEIAERQYLCNSIQEVQQRYEQIQQERSDLQVEIDGMVVKV 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGV 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+RVGD V V R G+VIPKV  +    R  DA+
Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRPVDAE 403

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 404 IVHLPENCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++           ++  ADI+ L   ++     +  I   G+ SV NL D+I   +
Sbjct: 458 GDRWVESLLH----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +               D  +L + P VGD
Sbjct: 510 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------DVEALKKTPDVGD 559

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L+                 +  +  V TGTL+++ R +A
Sbjct: 560 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL 
Sbjct: 619 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAVMNETDFLSLMASYGQTLS 678


>gi|325955534|ref|YP_004239194.1| DNA ligase [Weeksella virosa DSM 16922]
 gi|323438152|gb|ADX68616.1| DNA ligase [Weeksella virosa DSM 16922]
          Length = 663

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 217/703 (30%), Positives = 367/703 (52%), Gaps = 46/703 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ + +L +E+  H+  YY   +P I D E+D   +    +    P+     DPN P  +
Sbjct: 4   QQRILALREELHQHNYRYYVLDQPSISDFEFDLKLKELQKLEKEHPEF---SDPNSPTVR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  +   ++H     SL+  ++IE+L+++I R+Y+     +  +  F  E K DG 
Sbjct: 61  VGGSITKNFPTISHEYQMYSLDNSYSIEELKQWIARVYK-----NIENPTFVCELKYDGA 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I+I YE GK   A  RGDG  G+D++A ++ I ++P +L  + P    +RGE+ I    
Sbjct: 116 SISILYENGKLTQAVTRGDGTQGDDITANVKTITSLPLILRGSYPTKFYMRGEITIPIKT 175

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N++    G   YANPRN ASG L+  +  ++ +              +    Q+ M
Sbjct: 176 FDKINEQRKDEGLLLYANPRNTASGSLKLQDSAEVAKRGLQCFPYAFVGENLGFDEQWTM 235

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           ++K + LGF +       +    I++Y  + +S R  LP++IDG+V KV+ F+ Q++LG 
Sbjct: 236 IEKAKELGFKIPETASLCSNLEEIIAYITKWESKRHQLPFEIDGIVIKVNSFAQQEELGY 295

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            ++SPRW +++KF  + A T L  I  Q+GRTG +TPVA L PV + G +I  A+LHNED
Sbjct: 296 TSKSPRWAVAYKFKAEAAETTLESITYQVGRTGAITPVANLHPVQLAGTIIRRASLHNED 355

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            IK L           DIR+GD+V V++ GE+IPK+V +  + R    +   +   CP C
Sbjct: 356 IIKKL-----------DIRIGDQVYVEKGGEIIPKIVGVNTDVRPAGTEEIRYIENCPSC 404

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            +++VR          A H C     C  Q + RL+HFVSR A +IE +G +      + 
Sbjct: 405 GTKLVRGEGE------ALHYCLNEDGCPPQIIGRLEHFVSRKAMDIESIGSETAILLHE- 457

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   AD +TL +        I  +    + S  N+ D+I   +  S ER ++ L
Sbjct: 458 ---AGLVNNVADFYTLTKE------MILPLERMAEKSAQNIIDAIENSKQQSFERLLYGL 508

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG  +A+ LA ++ + ++  +            +  LI V  +G+ IAQ+I+ ++ 
Sbjct: 509 GIRHVGNTVAKKLALHFGTMESLKKAT----------YDELILVEDIGEKIAQSIIAYFD 558

Query: 618 NPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              ++  ++ L     S  +G+ +  +S ++  K  +FTG+L K  R +AQ+ V + G  
Sbjct: 559 KEEHLELIDRLKTYGLSLELGKEQTPISDKLTGKTFLFTGSLTKFTRAEAQKLVEEHGGK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             + +S+  D +I G+  GSKL+KA++L + ++ E +FL L+ 
Sbjct: 619 NLSAVSKNLDYLIAGEKAGSKLKKAEELKITVLTEGEFLELIN 661


>gi|332558050|ref|ZP_08412372.1| DNA ligase [Rhodobacter sphaeroides WS8N]
 gi|332275762|gb|EGJ21077.1| DNA ligase [Rhodobacter sphaeroides WS8N]
          Length = 704

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 303/714 (42%), Positives = 438/714 (61%), Gaps = 17/714 (2%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P++ L+  +A  EL+ L + I   +  Y+ +  P I D++YDALK R  AI   FP+L R
Sbjct: 6   PVDQLTEAEAAAELARLAEAIEAANTAYHTHDAPQISDADYDALKLRNRAIEEQFPELRR 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           S   + P +++GG +     KV H +  LSLE  +++ ++  +I RI R+     D  + 
Sbjct: 66  S---DSPSDRVGGALAEGFAKVRHDVRMLSLENAFDLAEVEDWIERIRRYLGHVGD--LL 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT EPKIDG  +++RYEKG  V AA RGDG +GE+V+   R I  +P  L  + P+++EV
Sbjct: 121 FTAEPKIDGLSLSLRYEKGHLVQAATRGDGETGENVTENARTIADLPTEL-DSAPDLLEV 179

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+S  DF ALN    A G++ +ANPRNAA+G LR+L+P    +R L FF +  G  
Sbjct: 180 RGEVYMSHEDFAALNGRQEAAGQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAH 239

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE  A  Q+E + ++  LGF  N   R       +++ + E++  R+ L YDIDG+VYKV
Sbjct: 240 SEPLAATQHEAIARLAALGFATNPLTRLCTGPEELLAQHAEIERQRAALGYDIDGVVYKV 299

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +LQ++LG RA +PRW I+HKFA + A T+L  IDIQ+GRTG L+PVARL+PV +GG 
Sbjct: 300 DDLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDIQVGRTGALSPVARLKPVTVGGV 359

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++ NATLHNEDYI G D+ G+ +RGG+DIRVGD V V RAG+VIPKV D+ ++ R   A 
Sbjct: 360 VVANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLDRRPEGAA 419

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP C S  +R+         +  RCTGGL C AQQ+ERLKHFVSR AF+IEGL
Sbjct: 420 PYRFPETCPECGSEAIREPG------DSVRRCTGGLICPAQQVERLKHFVSRAAFDIEGL 473

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q++  ++       IR PADIF L  R +    ++EN  G+G  S  NL+ +I  RR
Sbjct: 474 GAKQVEALWRD----GWIRQPADIFELPNRYREGIQRLENREGWGRKSAENLFAAIEARR 529

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            I+L R IF+LGIRHVG   A  LA +Y S+  F   +         +W  L+ +  VG 
Sbjct: 530 RIALHRLIFALGIRHVGETTATLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGA 589

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++A ++V  +       AV+AL   ++         V+S +  + +VFTGTL+K+ R +A
Sbjct: 590 VLATSLVTAFHQEAERAAVDALAAHLTVEDAEVRAPVASPVAGRIVVFTGTLEKMSRAEA 649

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +     LGA VS  +S +TD+++ G   GSK ++A  LG++ ++E+ +L L+  
Sbjct: 650 KARAEALGAKVSGSVSARTDLVVAGPGAGSKAKQAAALGIETIDEDGWLRLIGD 703


>gi|229587074|ref|YP_002845575.1| NAD-dependent DNA ligase LigA [Rickettsia africae ESF-5]
 gi|254781406|sp|C3PLJ2|DNLJ_RICAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|228022124|gb|ACP53832.1| DNA ligase, NAD-dependent [Rickettsia africae ESF-5]
          Length = 689

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 272/712 (38%), Positives = 417/712 (58%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S E+A+K L  L  +I+ ++  YY    P++ DSEYD L      +   FP L   
Sbjct: 4   IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  K+G ++     KVTH +P LSL   ++ +D+R F+ RI  F +  +   I  
Sbjct: 64  ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPI-- 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G     A RGDG+ GED++A I+ I   P     N+PE +EVR
Sbjct: 119 FCEPKIDGLSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPH-KIDNVPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN E    G+  +ANPRNAA+G LR+L+ +    R L +FV+  G T 
Sbjct: 178 GEIYIEKQDFLNLNKEQDEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++  GF +N   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  
Sbjct: 298 DFVLQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIPK++ +  ++R  D + 
Sbjct: 358 VSRATLHNFQEIAR-----------KDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FC  C S++               RC  GL C AQ  ER++HFVS++A +IEGLG
Sbjct: 407 FDTPLFCLSCNSKLHY------TPEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F          I  P DIF L+ +  +S  K+EN+ G+G  SV NL+ +I K +N
Sbjct: 461 RKQVEFLIDK----GLISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G + A+ LA+ + SY NF  ++  +  +  D +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I   I++F+    NI  ++ L   ++    +  +  SS + +K +VFTG+L  I R +A+
Sbjct: 577 ILVDIIDFFDVKENIELIKKLGGILNIEDYKETREQSS-LTDKIVVFTGSLSTISRAEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               +LGA V+  +S  TD+++ G   GSKL+KA++L +KI++EE++L L++
Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVAGVGAGSKLKKAKELNIKIIDEEEWLTLIK 687


>gi|323140467|ref|ZP_08075395.1| DNA ligase (NAD+) [Phascolarctobacterium sp. YIT 12067]
 gi|322415035|gb|EFY05826.1| DNA ligase (NAD+) [Phascolarctobacterium sp. YIT 12067]
          Length = 679

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 248/708 (35%), Positives = 375/708 (52%), Gaps = 53/708 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            E   L +EI +++  YY    P I D+EYD +  R   +   +PD   +   + P  ++
Sbjct: 16  AEADKLRREIRHNEYLYYVLDAPEITDAEYDRMMVRLRELEARYPDSIPA---DSPTQRV 72

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG  +    +V H  P LSL  +++ E+LR F  R+         + + + +EPKIDG  
Sbjct: 73  GGRASSQFTEVRHLEPLLSLGNVFSAEELRAFDERVRSGL--PAGSKVEYVMEPKIDGLA 130

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYIS 194
            ++ YE GK V AA RGDG  GE+V+A +R I +IP  L       +PE+++VRGEVY+ 
Sbjct: 131 CSLIYENGKLVRAATRGDGVVGENVTANVRTIRSIPLTLKVPDGETVPELLDVRGEVYMP 190

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVHGLGKTSEIFAK 252
           +  F+ LN++    G   +ANPRNAA+G LR+L+P          F  + +G+ ++    
Sbjct: 191 RQAFMRLNEQRAERGESEFANPRNAAAGSLRQLDPQVTASRSLSFFAYYLVGEGAQPK-- 248

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E L  +   GF V+   +        + Y  +   +R  L YD DG V KV++   Q
Sbjct: 249 -HSESLALLAHYGFKVSENYKVVENIDEAIKYIGDFNELRQGLSYDTDGAVIKVNDVYQQ 307

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG   + PRW  ++K+  +QA T L DID ++GRTG+LTP A L PV + G++I+ AT
Sbjct: 308 RILGATGKDPRWATAYKYPPEQAETTLEDIDWRVGRTGVLTPTAVLTPVKLSGSVISRAT 367

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED+I+            +DIR+GDRV++ +AGE+IP+V+ ++V +R  D +  + PS
Sbjct: 368 LHNEDFIR-----------AKDIRIGDRVVINKAGEIIPEVLRVVVEKRTGDEKEVAIPS 416

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C  RV R          AA RCT    C A   E L HFVSRDA NI+G G   ++
Sbjct: 417 VCPECGWRVERQGEE------AAIRCTNP-HCPALGREGLIHFVSRDAMNIDGCGPSVIN 469

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                   A  +R  AD+++L++           +   G+ S  NL  ++ + +   L++
Sbjct: 470 ALLD----AGLVRDAADLYSLRKDDL------LKLERMGEKSADNLLAALAESKKNELDK 519

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F+LGIRHVGA++AR LA  + S +   Q               L ++  +GD IA+++
Sbjct: 520 LLFALGIRHVGAKVARILATEFGSMEKLQQA----------QPEELAQIRDIGDKIAESV 569

Query: 613 VEFYQNPRNICAVEALLKEVSPS-IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           V +   P NI  VE L                 +    K LVFTGT+  + R +A+    
Sbjct: 570 VTWLNVPANIDLVERLAAAGLTMTFTPTASQEDNPFFGKTLVFTGTMPTLGRAEAKTMAQ 629

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +GA VS  +S+KTD +I G   GSKLEKAQQLGV +++E +FL LL+
Sbjct: 630 DVGAKVSGSVSKKTDYVIAGAEAGSKLEKAQQLGVTVIDEAEFLRLLK 677


>gi|254445017|ref|ZP_05058493.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235]
 gi|198259325|gb|EDY83633.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235]
          Length = 668

 Score =  544 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 220/709 (31%), Positives = 353/709 (49%), Gaps = 47/709 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S     K +  L  EI  HD+ YY+ ++P I D +YD LKR    +  A P+L      
Sbjct: 1   MSKASDLKRIEQLRAEIRRHDELYYRNAEPEISDFDYDGLKRELADLEAANPELPMEA-- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P   +G +         H +P  SL+  ++ ++   F+ R+ +  + ++ +   FT+E
Sbjct: 59  -SPTQAVGDDRVEGFESYRHRLPMQSLDNTYSKDEFVAFVARVEKGLEIENAH---FTVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PKIDG  +++ YE+G+ V A  RG+G  G+DV+A  R I ++P  L     P++IE+RGE
Sbjct: 115 PKIDGVAVSLTYEQGELVRAVTRGNGIEGDDVTANARFIESLPGSLQGDFHPDLIEIRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEI 249
           +++   +F  LN E    G + + NPRN A+G ++ L+  +   R L+  ++GLG     
Sbjct: 175 IFMHVEEFERLNAERREAGLEQFKNPRNLAAGTIKMLDREEVAKRKLDIVLYGLGDCRPA 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q E  +++   G PV     +     G  S   E+  +R    +  DG V K+D F
Sbjct: 235 VVSSQIEYRKQLVLWGLPVVERFWEVEGAEGAWSAVEELDEVRGGFAFPTDGAVVKLDSF 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           S Q  LG  +++PRW I+ KFA +QA T L  I IQ+GRTG LTPVA L+PV + G  ++
Sbjct: 295 SQQDALGATSKAPRWAIAVKFAAEQAETVLERITIQVGRTGTLTPVAELQPVQLAGTTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN++ +             +D+RVGD V+V++AGE+IP VV +++ +R  ++  F 
Sbjct: 355 RATLHNQEEMAR-----------KDVRVGDTVVVEKAGEIIPAVVRVVLEKRPEESASFV 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP C + V +       +            C  Q   RL+HF SR   +IEGLG+ 
Sbjct: 404 FPERCPACGTEVSKIEGEVAVR-------CLNSECPDQVRGRLEHFASRQCLDIEGLGEA 456

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D     +     +   +DI+ L+            +  F + S  NL  +I   + + 
Sbjct: 457 VVDQLVARK----IVSNISDIYGLEYEDM------LALDKFAEKSARNLLAAIEASKGVE 506

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R +  LGI  VGA  A+ LAK     +  ++               L+ +  +G+  A
Sbjct: 507 LWRLLHGLGIPQVGASAAKDLAKALGGVRELSEA----------SVERLVEIDGIGEKTA 556

Query: 610 QAIVEFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
             IV ++ + RN   V+AL     +P          +    K  V TGTL  ++R +A+ 
Sbjct: 557 SGIVAYFGDERNKTVVDALFAAGMNPKAPERPSEADAIFAGKTFVITGTLPTMKRDEAKA 616

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V   G  V+  +S+KTD ++ G+  GSKL KA+ LGV +++E + L +
Sbjct: 617 LVESKGGKVAGSVSKKTDFLVAGEAAGSKLTKAESLGVTVVDEAELLKM 665


>gi|312135376|ref|YP_004002714.1| DNA ligase, nad-dependent [Caldicellulosiruptor owensensis OL]
 gi|311775427|gb|ADQ04914.1| DNA ligase, NAD-dependent [Caldicellulosiruptor owensensis OL]
          Length = 673

 Score =  544 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 244/703 (34%), Positives = 383/703 (54%), Gaps = 47/703 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  
Sbjct: 5   IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVL---PDSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     +V H +P LSL  ++N  +L  F  R+       D     + +E KIDG
Sbjct: 62  RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSD---FDYVVEYKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE G FV  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K+
Sbjct: 119 LSVALEYENGLFVRGATRGDGNIGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMPKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
           +F+ LN E        +ANPRNAA+G LR+L+P    +          +  E   +   E
Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNVQWCEKEIETHAE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ MR LGF V+           +     +++  R +LP++IDG V K+++  L+   G
Sbjct: 237 ALEYMRKLGFKVSPDYVVCKDIKEVYEVIRKIEEKRDSLPFEIDGAVVKLNQLRLRDVAG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           E A+SPRW +++KF  ++  T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN 
Sbjct: 297 ETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R    + F  P  CP+
Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + V++  +        A+RCTG   C A+    + HFVSRDA +I G+G+  +   F+
Sbjct: 406 CGADVIKFEDE------VAYRCTGV-ECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+ PADI+ L+     +      +  FG  S  NL  +I   +N  L+R I++
Sbjct: 459 R----GLIKTPADIYYLKFEDLVN------LERFGVKSTNNLLKAIQASKNRPLDRLIYA 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G + A++LA++  S  +                  L+ +P  G+ +A+++V F+
Sbjct: 509 LGIRHIGQKAAKTLAEHISSIDDLFTITE----------EQLLALPDFGEKMAKSVVTFF 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +  +    +E L      ++    K  S+ +++   V TG L K  R++A+E +  LGA 
Sbjct: 559 RQEQTRHLIERLKAAGVNTVSEK-KAKSNILKDYTFVLTGALSKYSRNEAKEILESLGAK 617

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+KT  +IVG +PGSK  KAQQLGVKI+NEE F  L++
Sbjct: 618 VTESVSKKTTAVIVGQDPGSKYTKAQQLGVKILNEEDFEKLVK 660


>gi|149183793|ref|ZP_01862194.1| NAD-dependent DNA ligase LigA [Bacillus sp. SG-1]
 gi|148848496|gb|EDL62745.1| NAD-dependent DNA ligase LigA [Bacillus sp. SG-1]
          Length = 668

 Score =  544 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 245/717 (34%), Positives = 386/717 (53%), Gaps = 56/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + I+ A ++++ L   ++ ++  Y+   KP + D+EYD +     AI   FP+L     P
Sbjct: 1   MDIKSAEQKVAELHNLLNQYNYEYHVLDKPSVPDAEYDRVMNELIAIETEFPEL---RTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG    +  KV H  P LSL   +N +DLR F  ++ +   +       +  E
Sbjct: 58  DSPTQRVGGNTLEAFEKVEHRTPMLSLGNAFNEDDLRDFDRKVRQAAGEAY----SYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G F   A RGDG  GED++A ++ I +IP  +   +   +EVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGLFSQGATRGDGTIGEDITANLKTIKSIPLRIPEPL--TMEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           ++ K  F ALN        +P+ANPRNAA+G LR+L+P    +R L+ +++ +    E  
Sbjct: 172 FMPKRSFEALNKAKEEKEEEPFANPRNAAAGSLRQLDPRIAASRNLDIYLYSIADVGETG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   ++ +    ++ Y       R  LPYDIDG+V KVD   
Sbjct: 232 VVSHSEGLDLLDKLGFKTNKERKRCSNIEEVIQYVEGWVEKRPDLPYDIDGIVIKVDSLP 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  A+SPRW I++KF  ++  T L DI++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 LQQELGTTAKSPRWAIAYKFPAEEVVTLLKDIELSVGRTGVVTPTAILEPVKVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DI++GD V+VK+AG++IP+VV+++   R  D Q F  
Sbjct: 352 ASLHNEDLIR-----------EKDIKIGDYVVVKKAGDIIPEVVNVLEERRTGDEQDFHM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PEECPECGSGLVRLEKE------VALRCINPK-CPAQIREGLIHFVSRNAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   FK       I   ADI+ LQR Q         +   G+ SV NL ++I   ++ SL
Sbjct: 454 ISQLFKE----GLIVDVADIYRLQREQL------LQLERMGEKSVDNLLNAIEASKSNSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ A++LA+ + +  N                  L  +  +GD +A 
Sbjct: 504 ERLLFGLGIRHVGAKAAKTLAQEFENIDNLKVASK----------DQLTAINEIGDKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+V +++    +  +  L      +  +         + S    K +V TG L+++ R++
Sbjct: 554 AVVAYFEKEEVMELIGELKTAGVNTEYKGPKPVKVDEIDSYFAGKTIVLTGKLEQLGRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A++ + +LG  V+  +S+KTD+++ G++ GSKL KAQ+L ++I +EE    L+++ N
Sbjct: 614 AKQKIEELGGKVTGSVSKKTDLLVAGEDAGSKLSKAQELQIEIWDEE---KLIEELN 667


>gi|23013561|ref|ZP_00053441.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 696

 Score =  544 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 288/725 (39%), Positives = 431/725 (59%), Gaps = 41/725 (5%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
            R  +PI+ L+  +AR E + L +++   D+ Y+    P++ D  YD  KRR   I   F
Sbjct: 2   SRPPVPIDVLTPFEARIEHAELVEKLVSWDEAYHGQDAPLVPDDVYDGAKRRLSGIEARF 61

Query: 63  PDLARSEDPNGPLN-KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           P+LA       P+  K+G   +    K+ H++P LSL+  ++ ED+ +F  ++ RF    
Sbjct: 62  PELAAK----SPIKDKVGAAPSEGFGKLVHALPMLSLDNAFSPEDVAEFDAKVRRFLGLS 117

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP--TIPRVLSL 179
           D+  + +  EPKIDG  I +RYE G FV AA RGDG  GEDV+  +   P   +PR L  
Sbjct: 118 DEAPLAYVAEPKIDGLSINLRYENGNFVSAATRGDGAEGEDVTRNLDTFPETQLPRRLGP 177

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           + P +IE+RGEVY++K DFLALN    + G KP+ANPRNAA+G LR+L+P    +R L+ 
Sbjct: 178 DAPAVIEIRGEVYMTKADFLALNQRQESAGEKPFANPRNAAAGSLRQLDPKITASRPLSL 237

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F + +G+ S + A   +  L++++  GF VN  +R+ +   G+++ Y  +   R+ LPYD
Sbjct: 238 FAYAMGEASSLPAASHWGYLERLKAWGFVVNPLIRRCDGVAGLLAAYGSLGEARAALPYD 297

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD+  LQK+LG  +RSPRW I+HKF  +QA+T L  IDIQ+GRTG LTPVARL
Sbjct: 298 IDGIVYKVDDLELQKRLGFVSRSPRWAIAHKFPAEQATTLLEAIDIQVGRTGALTPVARL 357

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PVN+GG +++NATLHNED I             +D+RVGD V+V+RAG+VIP++V ++ 
Sbjct: 358 TPVNVGGVVVSNATLHNEDEIAR-----------KDVRVGDTVIVQRAGDVIPQIVGVVP 406

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            +      PF +P  CP+C +  VR             RCTGGL C AQ  ERLKHFVSR
Sbjct: 407 GKPRGPT-PFVYPDTCPVCGAHAVRPEGE------VIRRCTGGLTCDAQAKERLKHFVSR 459

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           +AF+IEGLG + ++F +        +R PA IFTL+   Q    K+EN  G+G  S   L
Sbjct: 460 NAFDIEGLGDKNIEFLWDK----GWVRKPAHIFTLEAANQDRLQKLENFEGWGKRSTEKL 515

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
           ++SI  R ++ LERFIF+LGIR +G   A+ LA++Y  +Q +   +        +    L
Sbjct: 516 FESIRSRASMGLERFIFALGIRQIGEATAKRLARHYGGFQAWRDAM------TEEGKDEL 569

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLV 653
             +  +G  +A  +++F++   N  A++ L++            +  +  +S I  K +V
Sbjct: 570 TSIEDIGPSVAADLLDFFKEEHNRAALDDLVRAMEALGGGVQDAKRIEAFASPIAGKAVV 629

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
           FTGTL  + R +A+     LGA V   +S+KTD ++VG + GSK  +A +LG+ I++E++
Sbjct: 630 FTGTLVTMTRPEAKARAEALGAKVVGSVSKKTDYVVVGADAGSKATEAAKLGLTILSEQE 689

Query: 714 FLFLL 718
           +L L+
Sbjct: 690 WLDLI 694


>gi|311067136|ref|YP_003972059.1| NAD-dependent DNA ligase LigA [Bacillus atrophaeus 1942]
 gi|310867653|gb|ADP31128.1| NAD-dependent DNA ligase LigA [Bacillus atrophaeus 1942]
          Length = 668

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 240/715 (33%), Positives = 394/715 (55%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A++    L   I+ +   YY   +P + DSEYD L +    +    PDL     P
Sbjct: 1   MDKEAAKRRAEDLRSTINQYSYEYYTLDEPSVPDSEYDKLMQELLDLEEEHPDL---RTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  +  KV H  P LSL   +N EDLR F  R+ +       + + + +E
Sbjct: 58  DSPTQRVGGAVIDAFQKVRHGTPMLSLGNAFNAEDLRDFDRRVRQAVG----DDVAYNVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +       IEVRGE 
Sbjct: 114 LKIDGLAVSLRYENGYFVRGATRGDGTTGEDITENLKTIRNIPLKM--KRNLSIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F ALN+E +    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+ 
Sbjct: 172 YMPKRSFEALNEERLKKEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q + L  +  +GF  N   ++  T   ++    E+++ R+ LPY+IDG+V KVD   
Sbjct: 232 VDTQSQGLDFLDEIGFKTNQERKKCGTIDEVIDMIEELQAKRADLPYEIDGIVVKVDSLD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T LLDI++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 QQEELGFTAKSPRWAIAYKFPAEEVVTTLLDIELNVGRTGVITPTAVLEPVKVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+ D+V++K+AG++IP+VV+++  +R    + F+ 
Sbjct: 352 ASLHNEDLIR-----------EKDIRILDKVVIKKAGDIIPEVVNVLTEQRTGQEKEFNM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTTCPECGSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+ +     +R  AD++ L + +         +   G+ S  NL  SI K +  SL
Sbjct: 454 ITQLFQEK----LVRNVADLYKLTKERVI------QLERMGEKSTDNLISSIQKSKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA ++ S  +  +           +   L+ +  +G+ +A 
Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFESLDHLKKA----------NKEELLAIDEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A++ ++Q    +  ++ L +    ++ +       ++  S    K +V TG L+++ R+ 
Sbjct: 554 AVITYFQKEEMLELLDELEQLGVNTLYKGPKKVKVEDSDSYFAGKTIVLTGKLEELSRND 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+ TD++I G+  GSKL KA++L +++ NEEQ L  L++
Sbjct: 614 AKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAEELNIEVWNEEQLLGELKK 668


>gi|268316781|ref|YP_003290500.1| DNA ligase, NAD-dependent [Rhodothermus marinus DSM 4252]
 gi|262334315|gb|ACY48112.1| DNA ligase, NAD-dependent [Rhodothermus marinus DSM 4252]
          Length = 712

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 249/722 (34%), Positives = 372/722 (51%), Gaps = 52/722 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +EA+  ++A    + L + ++ H   YY    P+I D++YD L +    +   FP+L  
Sbjct: 29  DLEAIDRKEAEALAARLREVLNQHAYRYYVLDNPLIPDADYDLLMQALRKLEARFPELV- 87

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++GG       KV H  P LSL   +  ED+R +  R  R   ++    + 
Sbjct: 88  --TPDSPTQRVGGPPLGRFEKVRHPEPLLSLNNAFGEEDVRVWYERCCRMLAERLGQPVQ 145

Query: 128 --FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-----RVLSLN 180
              T E KIDG  + + YE G     A RGDG  GE+V+  +R IP IP           
Sbjct: 146 PAVTAELKIDGLAMALTYENGVLTVGATRGDGIEGENVTQNVRTIPAIPLRIPVDPAVGP 205

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P  +EVRGEVY+ K DF  LN+++ A G +P+ANPRNAA+G +R+LNP     R L+FF
Sbjct: 206 PPTRLEVRGEVYMRKRDFERLNEQLQARGERPFANPRNAAAGSVRQLNPQVTALRPLSFF 265

Query: 240 VHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G          QYE+LQ +  LGFPVN   R+      ++ Y       R  L Y+
Sbjct: 266 AYGIGPVEGAEVPDSQYEVLQWLGRLGFPVNEHARRFEHLDDVLEYCRYWTEHRDELDYE 325

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V K+D    Q  LG  + +PRW +++KF  ++A TRLLDI + +GRTG++ PVA L
Sbjct: 326 IDGVVLKIDHRPWQALLGAISNAPRWAVAYKFPAREAITRLLDIMVSVGRTGVVKPVAVL 385

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GG  ++ ATLHNEDY++            RDIR+GD V+V RAG+VIP+VV  +V
Sbjct: 386 EPVEVGGVTVSQATLHNEDYVRS-----------RDIRIGDLVVVIRAGDVIPQVVRPVV 434

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             R  + +P+  P  CP C S++VR          A + C     C AQ +  L+HF  R
Sbjct: 435 EARTGNERPWRMPERCPSCGSQLVRLPGE------ADYYCVAS-DCPAQFVRLLEHFAGR 487

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           DA +IEG+G Q      +S      +R  +D++            +  + GF +    NL
Sbjct: 488 DAMDIEGMGSQVARQLAES----GLVRRLSDLYR------LKLEDLLKLEGFAETRARNL 537

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   +   L R +F LGIRHVG   A  L + + S    A                L
Sbjct: 538 LRAIEASKQRPLSRLLFGLGIRHVGKTTAELLVQRFASIDELAAAT----------IDEL 587

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTG 656
             +  VG I A++I  +++   N   +E L +    +  +        S +  K  V TG
Sbjct: 588 AALEGVGPITAESIANWFRVEDNRRLIEELKELGVNTQRLPEEAPAAESPVRGKTFVLTG 647

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L  + R +A+E + + G  V++ +SR TD ++VG+NPGSK ++A+QLG+ +++E+  L 
Sbjct: 648 ALPHLTRKEAEELIKRAGGRVASSVSRNTDYVVVGENPGSKYDRARQLGIPMLDEDGLLR 707

Query: 717 LL 718
           LL
Sbjct: 708 LL 709


>gi|116748867|ref|YP_845554.1| DNA ligase, NAD-dependent [Syntrophobacter fumaroxidans MPOB]
 gi|116697931|gb|ABK17119.1| DNA ligase, NAD-dependent [Syntrophobacter fumaroxidans MPOB]
          Length = 694

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 265/719 (36%), Positives = 387/719 (53%), Gaps = 52/719 (7%)

Query: 9   IEAL-SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           + A+   E+A   + +L +EI +H+  YY   +P I D  YD L R    +  ++P L  
Sbjct: 17  VRAMPDREKAHARIEALREEIRHHNYLYYVLDRPEISDEAYDGLFRELVRLEESYPALI- 75

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G           H+IP LSLE   +  ++ +F  R+ +     D   + 
Sbjct: 76  --TPDSPTQRVGAAPAEKFLPFPHTIPMLSLENAMSEAEVFEFARRVRKILG--DRGDVD 131

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-----NIP 182
           F  EPK+DG  + + YE G+   A  RGDG+ GEDV+   + I  IP  L       + P
Sbjct: 132 FMAEPKMDGLAVELVYENGELTGAGTRGDGYVGEDVTRNAKTIRAIPLKLYAGAGGASPP 191

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
             I VRGEVY+ + DF ALN      G   +ANPRNAA+G LR+L+P+    R L  F +
Sbjct: 192 ARIAVRGEVYMDRKDFAALNRSREQAGEPLFANPRNAAAGSLRQLDPSVTAARSLKAFFY 251

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           G+G+ S    K Q + L+++R  G PVN   R   +    VS+YNE+ + R  LP++IDG
Sbjct: 252 GVGEVSGYRFKTQAQTLEQLRRWGLPVNPLSRVCPSIEDAVSFYNEIAAGRDALPFEIDG 311

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KV+    Q+ LGE++RSPRW I++KF+  QA TR+LDI +Q+GRTG+LTPVA LEPV
Sbjct: 312 VVVKVNSIEWQEMLGEKSRSPRWAIAYKFSPHQARTRVLDIKVQVGRTGVLTPVAELEPV 371

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG  +  ATLHN+D ++            +DIRV D+V+V+RAG+VIP+VV++I   R
Sbjct: 372 TVGGVTVRRATLHNQDEVER-----------KDIRVRDQVMVRRAGDVIPEVVEVIGEAR 420

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + F  P  CP C S VVR          A HRC     C AQ    L+HF SRDA 
Sbjct: 421 TGGEEVFQMPGQCPSCGSEVVRLPEE------AVHRCLN-RNCPAQIKASLRHFASRDAM 473

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NIEGLGK  +            +   +D++ L          +E + GF   S  NL +S
Sbjct: 474 NIEGLGKNIVSMLVDR----GIVESVSDLYRLSVE------TLEQLPGFAGKSSRNLVES 523

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I + +  +L  F+++LGI HVG+ +AR LA+ + +     +               L+ V
Sbjct: 524 IERSKKTNLADFLYALGIYHVGSHVARLLAERFGTLDAVRRA----------SVEELMSV 573

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQ 659
             VG+++A+++V ++  P N   VE+LL           +   V +    K +VFTG L 
Sbjct: 574 NGVGEVVARSVVHYFSLPANRTLVESLLSAGLEMAATEPEAGPVDAFWNGKTVVFTGALS 633

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + R  A       GA VS  +SRKTDI++ G +PGSK+EKA+QLG+ I++E +FL  L
Sbjct: 634 SMTRSNAAALTASRGARVSDSVSRKTDIVVAGADPGSKVEKARQLGITILDEREFLERL 692


>gi|301052018|ref|YP_003790229.1| DNA ligase [Bacillus anthracis CI]
 gi|300374187|gb|ADK03091.1| DNA ligase [Bacillus cereus biovar anthracis str. CI]
          Length = 669

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 389/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPVCESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|166216279|sp|A0LI67|DNLJ_SYNFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 675

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 264/714 (36%), Positives = 384/714 (53%), Gaps = 51/714 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
             E+A   + +L +EI +H+  YY   +P I D  YD L R    +  ++P L     P+
Sbjct: 3   DREKAHARIEALREEIRHHNYLYYVLDRPEISDEAYDGLFRELVRLEESYPALI---TPD 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G           H+IP LSLE   +  ++ +F  R+ +     D   + F  EP
Sbjct: 60  SPTQRVGAAPAEKFLPFPHTIPMLSLENAMSEAEVFEFARRVRKILG--DRGDVDFMAEP 117

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-----NIPEIIEV 187
           K+DG  + + YE G+   A  RGDG+ GEDV+   + I  IP  L       + P  I V
Sbjct: 118 KMDGLAVELVYENGELTGAGTRGDGYVGEDVTRNAKTIRAIPLKLYAGAGGASPPARIAV 177

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+ + DF ALN      G   +ANPRNAA+G LR+L+P+    R L  F +G+G+ 
Sbjct: 178 RGEVYMDRKDFAALNRSREQAGEPLFANPRNAAAGSLRQLDPSVTAARSLKAFFYGVGEV 237

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S    K Q + L+++R  G PVN   R   +    VS+YNE+ + R  LP++IDG+V KV
Sbjct: 238 SGYRFKTQAQTLEQLRRWGLPVNPLSRVCPSIEDAVSFYNEIAAGRDALPFEIDGVVVKV 297

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +    Q+ LGE++RSPRW I++KF+  QA TR+LDI +Q+GRTG+LTPVA LEPV +GG 
Sbjct: 298 NSIEWQEMLGEKSRSPRWAIAYKFSPHQARTRVLDIKVQVGRTGVLTPVAELEPVTVGGV 357

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN+D ++            +DIRV D+V+V+RAG+VIP+VV++I   R    +
Sbjct: 358 TVRRATLHNQDEVER-----------KDIRVRDQVMVRRAGDVIPEVVEVIGEARTGGEE 406

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  P  CP C S VVR          A HRC     C AQ    L+HF SRDA NIEGL
Sbjct: 407 VFQMPGQCPSCGSEVVRLPEE------AVHRCLN-RNCPAQIKASLRHFASRDAMNIEGL 459

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           GK  +            +   +D++ L          +E + GF   S  NL +SI + +
Sbjct: 460 GKNIVSMLVDR----GIVESVSDLYRLSVE------TLEQLPGFAGKSSRNLVESIERSK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L  F+++LGI HVG+ +AR LA+ + +     +               L+ V  VG+
Sbjct: 510 KTNLADFLYALGIYHVGSHVARLLAERFGTLDAVRRA----------SVEELMSVNGVGE 559

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRH 664
           ++A+++V ++  P N   VE+LL           +   V +    K +VFTG L  + R 
Sbjct: 560 VVARSVVHYFSLPANRTLVESLLSAGLEMAATEPEAGPVDAFWNGKTVVFTGALSSMTRS 619

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            A       GA VS  +SRKTDI++ G +PGSK+EKA+QLG+ I++E +FL  L
Sbjct: 620 NAAALTASRGARVSDSVSRKTDIVVAGADPGSKVEKARQLGITILDEREFLERL 673


>gi|254510866|ref|ZP_05122933.1| DNA ligase, NAD-dependent [Rhodobacteraceae bacterium KLH11]
 gi|221534577|gb|EEE37565.1| DNA ligase, NAD-dependent [Rhodobacteraceae bacterium KLH11]
          Length = 750

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 300/764 (39%), Positives = 435/764 (56%), Gaps = 59/764 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K     +  L+ E A++EL+ L  E+   +  Y+    P + D +YDALKRR   I  
Sbjct: 1   MSK--TTAVADLTEEDAQQELARLAAELLRANQLYHAEDAPELSDGDYDALKRRNAEIEA 58

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FPDL R+   + P  ++G   +    KV+H++  +SL   ++  D+  F   I ++   
Sbjct: 59  RFPDLKRT---DSPSEQVGARPSDGFAKVSHAMRMMSLGNAFDDTDIVDFDRSIRKYLGL 115

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             D  + FT EPKIDG  +++RYE+G+ V AA RGDG  GE+V+A  R +  IP  ++  
Sbjct: 116 TGDAPLAFTAEPKIDGLSLSLRYEQGELVQAATRGDGEVGENVTANARTVADIPHRIAGA 175

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P+++EVRGEVY+S  DF ALN      G K +ANPRNAA+G LR+L+      R L FF
Sbjct: 176 -PDVLEVRGEVYMSHQDFEALNTRQAETGGKTFANPRNAAAGSLRQLDSEITRARPLKFF 234

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ S   A+ Q   +Q+++  GF +N   R   T   ++ +Y  +++ R+TL YDI
Sbjct: 235 AYAWGELSAPLAETQMGAIQRLKAFGFQINALTRLCATPSQMLDHYRRIEAQRATLGYDI 294

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD+  LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL 
Sbjct: 295 DGVVYKVDDLGLQSRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLH 354

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG +++NATLHNEDYI G DA G V+R G+DIRVGD V V RAG+VIPK+ D+ ++
Sbjct: 355 PVTVGGVVVSNATLHNEDYIAGRDAKGGVIRDGKDIRVGDWVQVYRAGDVIPKLADVDLS 414

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  DAQP++FP+ CP C S   R+         A  RCTGGL C AQ +E+LKHFVSR 
Sbjct: 415 KRPADAQPYAFPTTCPECGSDATREEG------DAVRRCTGGLICPAQAVEKLKHFVSRK 468

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+IEGLG +Q++ F+   DP   I  PADIFTLQ R   +  +++N  G+GD S  NL+
Sbjct: 469 AFDIEGLGAKQIEMFY--GDPVLPINTPADIFTLQERDTKALARLKNRDGWGDTSANNLF 526

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN-------------- 585
           ++I  +R I   R +F+LGIRHVG   A+ LA +Y  +   A  I+              
Sbjct: 527 EAIEDKRKIPFARLLFALGIRHVGEVGAKDLALFYRDWDVMAASIDTARPAALAQRAADE 586

Query: 586 -----------------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
                                         + A     W  LI +  +G  +  ++ + +
Sbjct: 587 AEEVERIAAADEGRRAKLKDARDSVIAGREVPADAASAWADLIGIDGIGATLGLSLSDAF 646

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            N     A + L K +   +        S +  K +VFTGTL+K+ R +A+     LGA 
Sbjct: 647 ANADERAAFDTLRKHLEI-VAPDAPASDSPVAGKTVVFTGTLEKMTRAEAKARAEALGAK 705

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD+++ G   GSK +KA  LG++ ++E+ +L L+  
Sbjct: 706 VSGSVSQKTDLLVAGPGAGSKAKKAADLGIRTLDEDGWLQLIGD 749


>gi|296135970|ref|YP_003643212.1| DNA ligase, NAD-dependent [Thiomonas intermedia K12]
 gi|295796092|gb|ADG30882.1| DNA ligase, NAD-dependent [Thiomonas intermedia K12]
          Length = 688

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 243/708 (34%), Positives = 370/708 (52%), Gaps = 52/708 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            Q  +  + L  EI+  D  YY    P+  D++YDAL R    I    P+L     P+ P
Sbjct: 8   AQPAERAAQLRAEIARLDHAYYVLDAPLAPDADYDALFRELQQIEADHPEL---RTPDSP 64

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQK-KDDNSIFFTLE 131
             ++GG        V H++P LS++   +   E    F  R+        DD  + +  E
Sbjct: 65  TQRVGGAPLPEFAPVRHAVPMLSIQTETDTTPEGAVAFDQRVRNRLGLSADDPPVNYCAE 124

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I++RYE G+ V AA RGDG +GEDV+  +R I ++P  L  N P ++EVRGE 
Sbjct: 125 LKFDGLAISLRYEHGQLVQAATRGDGETGEDVTQNVRTIRSVPLQLRGNPPAVLEVRGEA 184

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT--SE 248
            + + DF   N      G     NPRN A+G +R+L+P     R L F+ +G G+     
Sbjct: 185 LMKRADFERYNARQRDKGLPTLVNPRNGAAGSIRQLDPAIAAQRPLAFYAYGWGEIADWA 244

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 + ML      G PV            ++ ++  + + R +LP+DIDG+VYKVD 
Sbjct: 245 QQPDTHHAMLDAFETFGLPVAPQRVHGPGAQTLIDFHARIAAARDSLPFDIDGVVYKVDS 304

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG R R P W ++HK+  ++ ST+++ IDIQ+GRTG LTPVA+LEPV +GG  +
Sbjct: 305 LALQRELGFRNREPVWAVAHKYPAQERSTKVIGIDIQVGRTGKLTPVAKLEPVFVGGVTV 364

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQP 427
           TNATLHNED ++            +D+RVGD V+V+RAG+VIP+VV ++++ R  D  +P
Sbjct: 365 TNATLHNEDEVRR-----------KDVRVGDTVIVRRAGDVIPEVVSVVMSARPADVGEP 413

Query: 428 FSFPS----FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           F         CP+C S +VR+         A  RCTGGL C+AQ+ + + H+ SR A +I
Sbjct: 414 FDLYQRLGGQCPVCGSAIVREAGE------ADWRCTGGLFCAAQRKQAILHYASRRAMDI 467

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG++ +D        A  +R+  D++ L         K+  +    + S  NL  ++ 
Sbjct: 468 EGLGEKLVDQLVD----AGIVRVLPDLYRL------GLLKLAALDRMAEKSAANLLQALQ 517

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +  +L RF+++LGIRHVG   A+ LA+++                       L+ VP 
Sbjct: 518 ASKTTTLARFLYALGIRHVGEATAKDLARHFGGLDAILDA----------SLEQLLEVPD 567

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           VG ++AQ+I  F+  P N   VE L       S    +++    +  K LV TG L  + 
Sbjct: 568 VGPVVAQSIRTFFDQPHNREVVEQLRACGVHWSEAAPDRDAPKPLAGKTLVLTGILPTLS 627

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           R +A+  +   G  V+  +S+KTD ++ G   GSKL KAQ+LGV +++
Sbjct: 628 REEAKARIEAAGGKVAGSVSKKTDYVVAGAEAGSKLAKAQELGVTVLD 675


>gi|217077826|ref|YP_002335544.1| DNA ligase, NAD-dependent [Thermosipho africanus TCF52B]
 gi|254781437|sp|B7IDX6|DNLJ_THEAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|217037681|gb|ACJ76203.1| DNA ligase, NAD-dependent [Thermosipho africanus TCF52B]
          Length = 665

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 235/708 (33%), Positives = 380/708 (53%), Gaps = 46/708 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  ++ ++E+  L +EI YH+  YY  + P+I D EYD L ++   +   +P+      P
Sbjct: 1   MDKKKFKEEIEKLREEIEYHNYRYYVLADPVISDEEYDKLLKKLIELEKKYPEF---YSP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  K+GG++     KV HSIP LSL+  +N E++++F  RI +       N + +  E
Sbjct: 58  TSPTQKVGGKVLDGFKKVMHSIPMLSLDNTYNEEEIKEFDERIKKLLGV---NEVEYVCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + +RYE G+FV A  RGDG  GED+S  ++ I +IP  L  N+   IEVRGE+
Sbjct: 115 LKIDGISVALRYENGQFVTALSRGDGIEGEDISENVKKIKSIPLRLFKNL--TIEVRGEI 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           ++   +F   N      G +P+ANPRNA +G +R+L+ +    R L+ F++ +       
Sbjct: 173 FMPVKEFEKYNKIAEEEGLQPFANPRNATAGTIRQLDSSIVAKRNLDSFIYYVVNPEIYG 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q+E L+ ++ +GF  N   R  +  + ++ ++ EM   R+ L Y IDGLV KV+ F 
Sbjct: 233 LKTQWEALKFLKEIGFKTNPYSRLCHDVNCVIDFWKEMTKKRTQLDYWIDGLVIKVNNFE 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LGE A++PRW I+ KF   +A +++L+I++ +GRTG++TPVA LEP+N+ G+++  
Sbjct: 293 YQRKLGETAKAPRWAIAFKFPSIKAESKILNIELNVGRTGVITPVAVLEPINLEGSIVKR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DYIK            +DIR+GD V V++AG +IP++V +I  +R         
Sbjct: 353 ASLHNFDYIK-----------EKDIRIGDHVYVEKAGGIIPQIVSVIKEKRTGKELEIEI 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CPIC  +V +    +         C        +    ++ FVS+ AFNI GLG++ 
Sbjct: 402 PKSCPICGGKVGKISEEEVAIRCLNPHCPQ------KLKRHMEIFVSKSAFNISGLGEKI 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++        A  I   ADIF L      +   +  I G G  S+ N+ + I K +N  L
Sbjct: 456 VEKIVD----ARLINDVADIFYL------TPFDLAQISGLGQKSIANILEQIEKAKNTPL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R I  LGI  VG + A+ LA  + S +  +Q            +  L  +  +G  +A+
Sbjct: 506 YRVIIGLGIPLVGEKTAKILADKFKSIKALSQA----------SYDELTSIEGIGPEVAK 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I+E+++N +    +  L           +   SS++     V TG      R + +E +
Sbjct: 556 NIIEYFKNEKTKEIIRKLENAGVKLEQEEDTKKSSKLAGLTFVITGKFNSFTREEVKEII 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +LG  V+  +S KTD ++VG+ PGSK +KA +LGVKI+NE++F  ++
Sbjct: 616 EKLGGKVTNTVSSKTDYLLVGEKPGSKYQKALELGVKIINEDEFKKMI 663


>gi|299771367|ref|YP_003733393.1| DNA ligase, NAD-dependent [Acinetobacter sp. DR1]
 gi|298701455|gb|ADI92020.1| DNA ligase, NAD-dependent [Acinetobacter sp. DR1]
          Length = 679

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 255/720 (35%), Positives = 379/720 (52%), Gaps = 47/720 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++     +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +PD  +S   
Sbjct: 1   MATTSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDQVQS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E
Sbjct: 58  DSPTTKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188
            K+DG  I++ YE G  +    RGDG +GED++  ++ I  +P+VL  +  EI   +EVR
Sbjct: 115 LKLDGLAISLWYENGVLIRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPRLLEVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P         F+ +G+ +  
Sbjct: 175 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCE 234

Query: 248 EIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 235 PNHNLTTMHDSLQWLTQLGFEIAERQYLCNSIQEVQQRYEQIQQERPDLQVEIDGMVVKV 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGV 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+RVGD V V R G+VIPKV  +    R P+A+
Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRSPEAE 403

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 404 IVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++           ++  ADI+ L   ++     +  I   G+ SV NL D+I   +
Sbjct: 458 GDRWVESLLH----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 509

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +               D  +L + P VGD
Sbjct: 510 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------DVEALKKTPDVGD 559

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L+                 +  +  V TGTL+++ R +A
Sbjct: 560 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL 
Sbjct: 619 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAVMNETDFLSLMASYGQTLS 678


>gi|305667253|ref|YP_003863540.1| DNA ligase [Maribacter sp. HTCC2170]
 gi|88708187|gb|EAR00425.1| DNA ligase [Maribacter sp. HTCC2170]
          Length = 664

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 223/706 (31%), Positives = 352/706 (49%), Gaps = 46/706 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             R+++ +L  E+  H+  YY    P I D ++D   +    +    P+     D   P 
Sbjct: 2   SVRQKIEALRAELREHNHNYYVLDNPTISDYDFDMKLKELQELEAKHPEF---YDATSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG++  +   + H     SL+  ++ EDL  +  RI R      D  + FT E K D
Sbjct: 59  LRVGGDITKNFNTIVHEHRMYSLDNSYSKEDLEDWEKRIQRILG---DAEVEFTCELKYD 115

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I++ YE GK   A  RGDG  G++V+A I+ I ++P  L  + P   ++RGE+ +  
Sbjct: 116 GASISLTYEDGKLSKAVTRGDGFQGDEVTANIKTIRSVPLQLKGDYPPKFDIRGEIILPL 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
           + F  +N E +A G  PY NPRN ASG L+  +   + +     +             QY
Sbjct: 176 DGFEKMNQERVAAGEDPYMNPRNTASGSLKLQDSAAVAQRPLDCLLYGIVGPNTGITSQY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           EML+K R  GF V +  +   T   ++++       R  LPY+ DG+V KV+    Q +L
Sbjct: 236 EMLEKSRDWGFKVPSIAQLCKTIDEVMAFVEYWDVHRHDLPYETDGVVIKVNSLQHQDEL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  ++SPRW +++KF  +Q ST L +I  Q+GRTG +TPVA LEPV + G  +  A+LHN
Sbjct: 296 GYTSKSPRWAMAYKFKAEQVSTVLNEITYQVGRTGAITPVANLEPVLLAGTTVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L           DIR  D V V++ GE+IPK++ + + +R  D++P  + + CP
Sbjct: 356 ADQIEKL-----------DIRERDTVFVEKGGEIIPKIIGVDIPKRPADSEPIKYITLCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C++ +VR          A H CT    C  Q   R++HF+SR A +IEGLG + ++  F
Sbjct: 405 ECETELVRTEG------DAKHYCTNFYGCPTQITGRIQHFISRKAMDIEGLGGETVELLF 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           K       IR  AD++ L + Q         +    + S  NL   +     I  ER +F
Sbjct: 459 KE----GLIRNYADLYILTKEQIM------PLERMAEKSAENLVKGVADSTTIPFERVLF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ LAK Y +        +            LI V  +G+ IAQ++VEF
Sbjct: 509 ALGIRFVGETVAKKLAKAYKNIDALMAASS----------EELIAVDEIGERIAQSVVEF 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +QN RN+  +  L           +K  N +  ++ K  V +G  + I R+  ++ +   
Sbjct: 559 FQNERNLDNIARLKSYGVQFEISADKLLNQTEILKGKTFVVSGVFETISRNDLKKLIEDN 618

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           G  V + +S KT  ++ GD  G SK  KA++L + I+ E+ FL ++
Sbjct: 619 GGKVGSSISSKTSFLVAGDKMGPSKRTKAEKLDIPIITEQDFLNMV 664


>gi|1352292|sp|P49421|DNLJ_RHOMR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|607820|gb|AAA93198.1| DNA ligase [Rhodothermus marinus]
          Length = 712

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 249/722 (34%), Positives = 372/722 (51%), Gaps = 52/722 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +EA+  ++A    + L + ++ H   YY    P+I D++YD L +    +   FP+L  
Sbjct: 29  DLEAIDRKEAEALAARLREVLNQHAYRYYVLDNPLIPDADYDLLMQALRKLEARFPELV- 87

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++GG       KV H  P LSL   +  ED+R +  R  R   ++    + 
Sbjct: 88  --TPDSPTQRVGGPPLGRFEKVRHPEPLLSLNNAFGEEDVRVWYERCCRMLAERLGQPVQ 145

Query: 128 --FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-----RVLSLN 180
              T E KIDG  + + YE G     A RGDG  GE+V+  +R IP IP           
Sbjct: 146 PAVTAELKIDGLAMALTYENGVLSVGATRGDGIEGENVTQNVRTIPAIPLRIPVDPAVGP 205

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P  +EVRGEVY+ K DF  LN+++ A G +P+ANPRNAA+G +R+LNP     R L+FF
Sbjct: 206 PPTRLEVRGEVYMRKRDFERLNEQLQARGERPFANPRNAAAGSVRQLNPQVTALRPLSFF 265

Query: 240 VHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +G+G          QYE+LQ +  LGFPVN   R+      ++ Y       R  L Y+
Sbjct: 266 AYGIGPVEGAEVPDSQYEVLQWLGRLGFPVNEHARRFEHLDDVLEYCRYWTEHRDELDYE 325

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V K+D    Q  LG  + +PRW +++KF  ++A TRLLDI + +GRTG++ PVA L
Sbjct: 326 IDGVVLKIDHRPWQALLGAISNAPRWAVAYKFPAREAITRLLDIMVSVGRTGVVKPVAVL 385

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GG  ++ ATLHNEDY++            RDIR+GD V+V RAG+VIP+VV  +V
Sbjct: 386 EPVEVGGVTVSQATLHNEDYVRS-----------RDIRIGDLVVVIRAGDVIPQVVRPVV 434

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             R  + +P+  P  CP C S++VR          A + C     C AQ +  L+HF  R
Sbjct: 435 EARTGNERPWRMPERCPSCGSQLVRLPGE------ADYYCVAS-DCPAQFVRLLEHFAGR 487

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           DA +IEG+G Q      +S      +R  +D++            +  + GF +    NL
Sbjct: 488 DAMDIEGMGSQVARQLAES----GLVRPLSDLYR------LKLEDLLKLEGFAETRARNL 537

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I   +   L R +F LGIRHVG   A  L + + S    A                L
Sbjct: 538 LRAIEASKQRPLSRLLFGLGIRHVGKTTAELLVQRFASIDELAAAT----------IDEL 587

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTG 656
             +  VG I A++I  +++   N   +E L +    +  +        S +  K  V TG
Sbjct: 588 AALEGVGPITAESIANWFRVEDNRRLIEELKELGVNTQRLPEEAPAAESPVRGKTFVLTG 647

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L  + R +A+E + + G  V++ +SR TD ++VG+NPGSK ++A+QLG+ +++E+  L 
Sbjct: 648 ALPHLTRKEAEELIKRAGGRVASSVSRNTDYVVVGENPGSKYDRARQLGIPMLDEDGLLR 707

Query: 717 LL 718
           LL
Sbjct: 708 LL 709


>gi|229028145|ref|ZP_04184287.1| DNA ligase [Bacillus cereus AH1271]
 gi|228733163|gb|EEL84003.1| DNA ligase [Bacillus cereus AH1271]
          Length = 669

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A++ +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKQRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|302871618|ref|YP_003840254.1| DNA ligase, NAD-dependent [Caldicellulosiruptor obsidiansis OB47]
 gi|302574477|gb|ADL42268.1| DNA ligase, NAD-dependent [Caldicellulosiruptor obsidiansis OB47]
          Length = 673

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 240/703 (34%), Positives = 378/703 (53%), Gaps = 47/703 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  
Sbjct: 5   IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVL---PDSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     +V H +P LSL  ++N  +L  F  R+       D     + +E KIDG
Sbjct: 62  RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTLD---FDYVVEYKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE G FV  A RGDG+ GEDV+  ++ I +IP  L  ++   I VRGEV++ K+
Sbjct: 119 LSVALEYENGLFVRGATRGDGNIGEDVTENLKTIRSIPLRLKEDVS--IVVRGEVFMPKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
           +F+ LN E        +ANPRNAA+G LR+L+P    +          +  E   +   E
Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNVQWCEKELETHAE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ +R LGF V+                 +++  R  LP++IDG V K+++  L+   G
Sbjct: 237 ALEFLRHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           E A+SPRW +++KF  ++  T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN 
Sbjct: 297 ETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R    + F  P  CP+
Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQEKIFEMPKKCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + V++  +        A+RCTG   C A+    + HFVSRDA +I G+G+  +   F+
Sbjct: 406 CGADVIKFEDE------VAYRCTGV-ECPAKSYRLILHFVSRDAMDIAGMGEMIVKTLFE 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+ PADI+ L+     +      +  FG  S  NL  +I   +N  L+R I++
Sbjct: 459 R----GLIKTPADIYYLKFEDLVN------LERFGVKSTNNLLKAIQASKNRPLDRLIYA 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G + A++LA++  S  +                  L+ +P  G+ +A+++V F+
Sbjct: 509 LGIRHIGQKAAKTLAEHISSIDDLFTITE----------EQLLSLPDFGEKMAKSVVTFF 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +  +    +E L      ++   +      ++    V TG L K  R++A+E +  LGA 
Sbjct: 559 KQEQTRHLIERLKAAGVNTVSEKKAKSD-ILKGYTFVLTGALSKYSRNEAKEILESLGAK 617

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+KT  +IVG +PGSK  KAQQLGVKI+NEE F  L++
Sbjct: 618 VTESVSKKTTAVIVGQDPGSKYTKAQQLGVKILNEEDFERLVK 660


>gi|257882881|ref|ZP_05662534.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,502]
 gi|257818539|gb|EEV45867.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,502]
          Length = 674

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 236/715 (33%), Positives = 388/715 (54%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S   
Sbjct: 1   MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+ +   +     + +  E
Sbjct: 58  DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRV----VDYCCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  L   +   IEVRGE 
Sbjct: 114 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMN--IEVRGEC 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ +     + 
Sbjct: 172 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPMQ 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK QY+ L+++  +GF  N   R  ++   + SY  E    R  LPY+IDG+V KV+EFS
Sbjct: 232 AKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEFS 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++ 
Sbjct: 292 LQDQLGFTIKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ +  
Sbjct: 352 ASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQL 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S +V            A RC     C AQ  E L HFVSR+A NI+GLG + 
Sbjct: 401 PTHCPVCGSELVHLDEE------VALRCINPK-CPAQMKEGLNHFVSRNAMNIDGLGPRV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+  +  +     +   AD++ L   +  +      +    + S  N+  +I+  ++ S+
Sbjct: 454 LEQMYDKK----LVADVADLYKLTEEELLT------LDKIKEKSANNILTAIDNSKDNSV 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA 
Sbjct: 504 ERLIFGLGIRHVGAKAAKILAEHFGDLETLSKS----------DYESIIALDTIGDIIAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N      +  L +       +       + V S  + K +V TG L +  R +
Sbjct: 554 SVVTYFSNEEVHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTRFTREE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L +
Sbjct: 614 AKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMADALAK 668


>gi|262280095|ref|ZP_06057880.1| DNA ligase [Acinetobacter calcoaceticus RUH2202]
 gi|262260446|gb|EEY79179.1| DNA ligase [Acinetobacter calcoaceticus RUH2202]
          Length = 692

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 255/720 (35%), Positives = 379/720 (52%), Gaps = 47/720 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++     +++  L Q I+ H+  YY   +P I DSEYD L  +  A+   +P+  +S   
Sbjct: 14  MATTSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEQVQS--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG+       VTH +P LSL  ++N EDL  F  R+        +  + + +E
Sbjct: 71  DSPTTKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERL---PNQKVQYEVE 127

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188
            K+DG  I++ YE G  +    RGDG +GED++  ++ I  +P+VL  +  EI   +EVR
Sbjct: 128 LKLDGLAISLWYENGVLIRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPRLLEVR 187

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247
           GEV + K+ F  LN +  A G K +ANPRNAA+G LR+L+P         F+ +G+ +  
Sbjct: 188 GEVLMPKSGFEKLNADQEAKGDKTFANPRNAAAGSLRQLDPNIAAGRPLAFYAYGIAQCE 247

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ LQ +  LGF +       N+   +   Y +++  R  L  +IDG+V KV
Sbjct: 248 PNHGLITMHDSLQWLTQLGFEIAERQYLCNSIQEVQQRYEQIQQERPDLQVEIDGMVVKV 307

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+QLG  +R PRW  ++KF  + A T +  ID Q+GRTG LTPVARL PV +GG 
Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGV 367

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++N TLHN   I  L           D+RVGD V V R G+VIPKV  +    R PDA+
Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRSPDAE 416

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGL
Sbjct: 417 IVHLPESCPVCASPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGL 470

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++           ++  ADI+ L   ++     +  I   G+ SV NL D+I   +
Sbjct: 471 GDRWVESLLH----LDLLKDVADIYHLHEHRE----TLLGIEKMGEKSVQNLIDAIEASK 522

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR LA  + + +               D  +L + P VGD
Sbjct: 523 KTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA----------DVEALKKTPDVGD 572

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ I +F+  P NI  ++ L+                 +  +  V TGTL+++ R +A
Sbjct: 573 ITAEWIADFFLAPHNIEVLDRLIAAG-IHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQA 631

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            + +  LGA VS  +S KT  ++ G+  GSKLEKA +LG+ +MNE  FL L+  Y  TL 
Sbjct: 632 TQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIIVMNETDFLSLMASYGQTLS 691


>gi|262369277|ref|ZP_06062605.1| DNA ligase [Acinetobacter johnsonii SH046]
 gi|262315345|gb|EEY96384.1| DNA ligase [Acinetobacter johnsonii SH046]
          Length = 679

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 249/709 (35%), Positives = 376/709 (53%), Gaps = 47/709 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            ++  L Q ++ H+  YY   +P I DSEYD L  +  A+   +P+  +   P+ P+NK+
Sbjct: 9   AQMRQLIQILAQHNHAYYVMDQPTIADSEYDQLFHQLKALEEQYPEYIQ---PDSPINKV 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG+       VTH +P LSL  ++N E+L  F  R         + +I + +E K DG  
Sbjct: 66  GGKPLAKFTSVTHVVPMLSLGNVFNQEELFAFARRAEERL---PNQTIQYDVELKFDGLA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGEVYISK 195
           I++ YE+G  V    RGDG +GED++  ++ I  +P+VL      +P ++EVRGEV + K
Sbjct: 123 ISLWYEQGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSTDQGEVPTLLEVRGEVLMPK 182

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAKGQ 254
             F  LN E  A G K +ANPRNAA+G LR+L+P         F+ +G+ +      +  
Sbjct: 183 AGFEKLNAENEAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCEPNHGQST 242

Query: 255 YEML-QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
                + ++  GF V       ++   + + Y ++ + R  L  +IDG+V KV+    Q+
Sbjct: 243 MSESLEWLQQFGFAVGERHFVCDSIQEVQAVYEQINAERPQLSVEIDGMVIKVNSLKQQQ 302

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLG  +R PRW  ++KF    A T + +ID Q+GRTG LTPVARL PV +GG  ++N TL
Sbjct: 303 QLGFLSREPRWATAYKFPAVAALTTVENIDWQVGRTGTLTPVARLNPVAVGGVTVSNVTL 362

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN   I  L           D+R+GD V V R+G+VIPKV  +    R  DA     PS 
Sbjct: 363 HNIGEIHRL-----------DVRIGDTVSVYRSGDVIPKVEKVWPEFRPVDATEVELPSQ 411

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C+S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEGLG + ++ 
Sbjct: 412 CPVCESPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVES 465

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                     ++  ADI+ L   ++    K+  I   G+ SV NL DSI   +  +L  F
Sbjct: 466 LLH----LDLLKDVADIYHLHEHRE----KLLTIEKMGEKSVQNLIDSIENSKKTTLAAF 517

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGIR VG   AR LA  + +                 D  +L + P VGDI A+ IV
Sbjct: 518 IYALGIRGVGETTARMLANTFQTLDALRVA----------DIDALKKTPDVGDITAEWIV 567

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +F+Q P N+  ++ LL                 +  +  V TGTL  + R +A + +  L
Sbjct: 568 DFFQAPHNLEVLDRLLAAG-IHWDAPVAPSRQPLNGESWVVTGTLSTMGRDEATQLLQAL 626

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           GA VS  +S KT  ++ G+  GSKL+KA++LG+ ++NE +F+ L++ Y 
Sbjct: 627 GARVSGSVSSKTKCVVAGEKAGSKLDKAEKLGIAVINEAEFIQLMKDYG 675


>gi|49479078|ref|YP_034626.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118476055|ref|YP_893206.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis str. Al
           Hakam]
 gi|225862344|ref|YP_002747722.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB102]
 gi|229182688|ref|ZP_04309929.1| DNA ligase [Bacillus cereus BGSC 6E1]
 gi|81397398|sp|Q6HP94|DNLJ_BACHK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215395|sp|A0R906|DNLJ_BACAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781551|sp|C1EV74|DNLJ_BACC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|49330634|gb|AAT61280.1| DNA ligase(NAD+) (NAD-dependent DNA ligase) [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|118415280|gb|ABK83699.1| NAD-dependent DNA ligase [Bacillus thuringiensis str. Al Hakam]
 gi|225789655|gb|ACO29872.1| DNA ligase (NAD(+)) [Bacillus cereus 03BB102]
 gi|228600773|gb|EEK58352.1| DNA ligase [Bacillus cereus BGSC 6E1]
          Length = 669

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|312877316|ref|ZP_07737282.1| DNA ligase, NAD-dependent [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795879|gb|EFR12242.1| DNA ligase, NAD-dependent [Caldicellulosiruptor lactoaceticus 6A]
          Length = 673

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 238/703 (33%), Positives = 378/703 (53%), Gaps = 47/703 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  
Sbjct: 5   IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     +V H +P LSL  ++N  +L  F  R+         ++  + +E KIDG
Sbjct: 62  RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLG---TSNFDYVVEYKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE G FV  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K+
Sbjct: 119 LSVALEYENGLFVRGATRGDGNVGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMPKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
           +F+ LN E        +ANPRNAA+G LR+L+P    +          +  E   +   E
Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNVQWCEKEIETHAE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ ++ LGF V+                 +++  R  LP++IDG V K+++  L+   G
Sbjct: 237 ALEFLKRLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW +++KF  ++  T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN 
Sbjct: 297 ATAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R    + F  P  CP+
Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + V++  +        A+RCTG   C A+    + HFVSRDA +I G+G+  +   F+
Sbjct: 406 CGADVIKFEDE------VAYRCTGV-ECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+ PADI+ L+     +      +  FG  S  NL  +I   +N  L+R I++
Sbjct: 459 R----GLIKTPADIYYLKFEDLVN------LERFGVKSTNNLLKAIQASKNRPLDRLIYA 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G + A++LA++  S  +                  L+ +P  G+ +A+++V F+
Sbjct: 509 LGIRHIGQKAAKTLAEHISSIDDLFTITE----------DQLLSLPDFGEKMAKSVVTFF 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +  +    +E L      ++   +      ++    V TG L K  R++A+E +  LGA 
Sbjct: 559 RQEQTRHLIERLKAAGVNTVSEKKAKSD-ILKGYTFVLTGALSKYSRNEAKEILESLGAK 617

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+KT  +IVG +PGSK  KAQQLGVKI+NEE F  L++
Sbjct: 618 VTESVSKKTTAVIVGQDPGSKFTKAQQLGVKILNEEDFEKLVK 660


>gi|300118925|ref|ZP_07056636.1| NAD-dependent DNA ligase LigA [Bacillus cereus SJ1]
 gi|298723541|gb|EFI64272.1| NAD-dependent DNA ligase LigA [Bacillus cereus SJ1]
          Length = 669

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|254724765|ref|ZP_05186548.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. A1055]
          Length = 669

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q+ DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QEIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R    + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGGEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|196040110|ref|ZP_03107412.1| DNA ligase (NAD(+)) [Bacillus cereus NVH0597-99]
 gi|196028965|gb|EDX67570.1| DNA ligase (NAD(+)) [Bacillus cereus NVH0597-99]
          Length = 669

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R    + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGGEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|30260478|ref|NP_842855.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Ames]
 gi|49183320|ref|YP_026572.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Sterne]
 gi|50196911|ref|YP_052606.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65317730|ref|ZP_00390689.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Bacillus anthracis str. A2012]
 gi|165871348|ref|ZP_02215996.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0488]
 gi|167634237|ref|ZP_02392559.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0442]
 gi|167640082|ref|ZP_02398349.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0193]
 gi|170688355|ref|ZP_02879564.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0465]
 gi|170708762|ref|ZP_02899199.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0389]
 gi|177653653|ref|ZP_02935792.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0174]
 gi|190567340|ref|ZP_03020254.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
 gi|190567489|ref|ZP_03020402.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
 gi|196034623|ref|ZP_03102031.1| DNA ligase, NAD-dependent [Bacillus cereus W]
 gi|227812970|ref|YP_002812979.1| DNA ligase, NAD-dependent [Bacillus anthracis str. CDC 684]
 gi|228913034|ref|ZP_04076673.1| DNA ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228925550|ref|ZP_04088639.1| DNA ligase [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228944102|ref|ZP_04106481.1| DNA ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229119952|ref|ZP_04249207.1| DNA ligase [Bacillus cereus 95/8201]
 gi|229604913|ref|YP_002864923.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0248]
 gi|254686689|ref|ZP_05150547.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. CNEVA-9066]
 gi|254739086|ref|ZP_05196788.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742292|ref|ZP_05199978.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Kruger B]
 gi|254756068|ref|ZP_05208097.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Vollum]
 gi|254761885|ref|ZP_05213734.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Australia
           94]
 gi|81584374|sp|Q81ZG1|DNLJ_BACAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781547|sp|C3PBP1|DNLJ_BACAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781548|sp|C3L543|DNLJ_BACAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|30253846|gb|AAP24341.1| DNA ligase (NAD(+)) [Bacillus anthracis str. Ames]
 gi|49177247|gb|AAT52623.1| DNA ligase, NAD-dependent [Bacillus anthracis str. Sterne]
 gi|50082973|gb|AAT70114.1| DNA ligase, NAD-dependent [Bacillus anthracis str. 'Ames Ancestor']
 gi|164712832|gb|EDR18361.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0488]
 gi|167511893|gb|EDR87272.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0193]
 gi|167530551|gb|EDR93266.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0442]
 gi|170126341|gb|EDS95231.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0389]
 gi|170667687|gb|EDT18441.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0465]
 gi|172081233|gb|EDT66308.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0174]
 gi|190561276|gb|EDV15248.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
 gi|190561467|gb|EDV15438.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
 gi|195992666|gb|EDX56626.1| DNA ligase, NAD-dependent [Bacillus cereus W]
 gi|227002604|gb|ACP12347.1| DNA ligase (NAD(+)) [Bacillus anthracis str. CDC 684]
 gi|228663418|gb|EEL19003.1| DNA ligase [Bacillus cereus 95/8201]
 gi|228815491|gb|EEM61733.1| DNA ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228834028|gb|EEM79576.1| DNA ligase [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228846439|gb|EEM91452.1| DNA ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229269321|gb|ACQ50958.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0248]
          Length = 669

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R    + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGGEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|21673293|ref|NP_661358.1| DNA ligase, NAD-dependent [Chlorobium tepidum TLS]
 gi|81791793|sp|Q8KF74|DNLJ_CHLTE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|21646383|gb|AAM71700.1| DNA ligase, NAD-dependent [Chlorobium tepidum TLS]
          Length = 674

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 228/716 (31%), Positives = 370/716 (51%), Gaps = 51/716 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   +A++E+  L  EI  H+  YY  +KP I D E+D L +R   +   FP+L     P
Sbjct: 1   MDKAKAQQEIGKLRAEIERHNRLYYLEAKPEISDFEFDKLLKRLIMLEKEFPELV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +      V H  P LSL   ++I ++  F  R+ +    +   +  +  E
Sbjct: 58  DSPSQRVGGGITKEFPTVVHRDPMLSLSNTYSIAEVADFCNRVEKLVAAEGGGTPEYVAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI--------PE 183
            K DG  I++ Y  G  V  + RGDG  G++++A +R IP+IP  L +            
Sbjct: 118 LKYDGVAISLLYRDGLLVCGSTRGDGRQGDEITANLRTIPSIPLRLEMPDLPLFGTALSG 177

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243
            IEVRGEVY+ K+DF  LN+E      + +ANPRNA +G L+  +  ++ R    FV   
Sbjct: 178 EIEVRGEVYMRKDDFERLNEERPE--EERFANPRNATAGTLKLQDSAEVARRRMSFVAYY 235

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
            K  +  A    + L++++ +GF      +       I  +  E    R TLPY+ DG+V
Sbjct: 236 LKGYDGEAPTHLKRLEQLKSMGFMTGAAAKLCKGMDEIADFIAEWSEKRWTLPYETDGVV 295

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K++E SL ++LG  A+SPRW I++K+  +QA T L  +  Q+GR G +TPVA L+P  +
Sbjct: 296 LKLNEVSLWERLGATAKSPRWAIAYKYPAQQAKTVLQGVVFQVGRLGTITPVAELKPTRL 355

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G++++ +TLHN D IK L            +R+GD V+++++GEVIPKVV ++++ER  
Sbjct: 356 AGSIVSRSTLHNFDEIKRL-----------GVRIGDHVMIEKSGEVIPKVVSVVLDERPA 404

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +      PS CP+C +R+ R              C     C AQ+  R+ HF SR+A +I
Sbjct: 405 ETAEIEVPSECPVCGTRLERPEGE------VNWYCPNEEGCPAQKRGRILHFASRNALDI 458

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           + LG+  +            +    D+++L + Q         +      S  N+ D++ 
Sbjct: 459 QNLGESLVTQLVDR----GLVSDAGDLYSLTQEQLAG------LDRMAAKSAQNVLDALE 508

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +  S  R +F+LGIRHVGA  AR LA    S     +           D  +L  VP 
Sbjct: 509 KSKKQSYARLLFALGIRHVGAATARELAHACPSIDRLRE----------MDEEALAAVPD 558

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQ 662
           +G +IA +I +F+  P     ++ L +   P     EK  V++  E + ++FTG L++  
Sbjct: 559 IGPVIAASIRDFFAKPWVQAMLQKLAEAGLPMQAGEEKALVNNNFEGQSVIFTGALERHV 618

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+E V + G  + + +S+KT +++ G   GSKLEKA +LGVK+++E++F  +L
Sbjct: 619 RQEAEEMVRERGGRIVSSVSKKTTLVVAGKEAGSKLEKAIKLGVKVIDEDEFERML 674


>gi|312793814|ref|YP_004026737.1| DNA ligase, nad-dependent [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180954|gb|ADQ41124.1| DNA ligase, NAD-dependent [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 673

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 238/703 (33%), Positives = 378/703 (53%), Gaps = 47/703 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  
Sbjct: 5   IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     +V H +P LSL  ++N  +L  F  R+         ++  + +E KIDG
Sbjct: 62  RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLG---TSNFDYVVEYKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE G FV  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K+
Sbjct: 119 LSVALEYENGLFVRGATRGDGNVGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMPKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
           +F+ LN E        +ANPRNAA+G LR+L+P    +          +  E   +   E
Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNVQWCEKEIETHAE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ ++ LGF V+                 +++  R  LP++IDG V K+++  L+   G
Sbjct: 237 ALEFLKHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW +++KF  ++  T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN 
Sbjct: 297 ATAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R    + F  P  CP+
Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + V++  +        A+RCTG   C A+    + HFVSRDA +I G+G+  +   F+
Sbjct: 406 CGADVIKFEDE------VAYRCTGV-ECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+ PADI+ L+     +      +  FG  S  NL  +I   +N  L+R I++
Sbjct: 459 R----GLIKTPADIYYLKFEDLVN------LERFGVKSTNNLLKAIQASKNRPLDRLIYA 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G + A++LA++  S  +                  L+ +P  G+ +A+++V F+
Sbjct: 509 LGIRHIGQKAAKTLAEHISSIDDLFTITE----------DQLLSLPDFGEKMAKSVVTFF 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +  +    +E L      ++   +      ++    V TG L K  R++A+E +  LGA 
Sbjct: 559 RQEQTRHLIERLKAAGVNTVSEKKAKSD-ILKGYTFVLTGALSKYSRNEAKEILESLGAK 617

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+KT  +IVG +PGSK  KAQQLGVKI+NEE F  L++
Sbjct: 618 VTESVSKKTTAVIVGQDPGSKFTKAQQLGVKILNEEDFEKLVK 660


>gi|325110927|ref|YP_004271995.1| DNA ligase [Planctomyces brasiliensis DSM 5305]
 gi|324971195|gb|ADY61973.1| DNA ligase [Planctomyces brasiliensis DSM 5305]
          Length = 675

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 227/711 (31%), Positives = 363/711 (51%), Gaps = 49/711 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
             +E++SL  EI  H+  YY  ++P I D E+D L  R   +    P+    + P+ P  
Sbjct: 5   VAQEIASLRDEIERHNRLYYVEAQPEITDREFDRLLNRLIDLEQQHPEF---QSPDSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K+GG+       V H++P LS+E ++  E + +F  RI +   ++   ++ +T+E KIDG
Sbjct: 62  KVGGQPIEGFQTVPHAVPMLSIENVFEPEGIDEFDRRICKLLDRE---TLDYTIEYKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195
             + + YE G+ + A  RGDG  G+D+++  R    +P  L+  N PE++EVRGE YI+ 
Sbjct: 119 VALALVYEHGRLIRAVTRGDGQQGDDITSNARTARGVPLKLAGDNPPELLEVRGEAYIAN 178

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
           +DF  L  E  A G   +ANPRN+ +G L+ L+P     R + F  HG+G  S       
Sbjct: 179 SDFAVLRAEQEARGETVFANPRNSTAGALKLLDPKLSAQRKVRFVSHGIGAHSNFGVDTH 238

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           ++ ++K+R  G P   G+R  +    +      M     TL  ++DGLV KV+  +L+++
Sbjct: 239 FDYIEKLREFGLPTTPGIRVCHGIQEVREQIEMMMDDLHTLDLEVDGLVIKVNSLALREE 298

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++SPRW+I++K+   +A+TR+ DI IQ+G+TG LTPVA L PV I G  +T ++LH
Sbjct: 299 LGNTSKSPRWVIAYKWERYEATTRVEDIQIQVGKTGTLTPVAYLAPVEIAGTTVTRSSLH 358

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D ++ L           DIR+GD  +V++AG++IP V+ +    R    Q F FP+ C
Sbjct: 359 NRDELQRL-----------DIRIGDYAVVEKAGKIIPHVLRVERERRDGSEQEFHFPTQC 407

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P CQ+ VV+D      +            C A+  E L+ F SR A +I+GLG + ++  
Sbjct: 408 PECQTEVVQDEGGVYIR-------CPNPDCPARLRESLRFFASRQAMDIDGLGIKLIEQL 460

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                 A  +   ADI+ L  R+     ++  +   G+ SV  +   I + +   L R +
Sbjct: 461 VD----AGLLTSLADIYRLPERRD----EMLALDRMGEKSVDKVLKGIERSKEQPLWRLL 512

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             L IRHVG   AR LA+ + S     +              +L  V  +G +IA+++ E
Sbjct: 513 TGLNIRHVGTSNARILAERFGSLGQLQE----------QSAENLAAVNEIGPVIAESVYE 562

Query: 615 FYQNPRNICAVEALLKEVSP-----SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           F  +      V  L            +   E+        K  V TGTL+   R +A+E 
Sbjct: 563 FLHSDFGATLVNQLADLGLNLGTAKQVSPEEEGAELPWAGKTFVLTGTLETFTRQQAEEE 622

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +   G   S  +S+KT  ++ G   GSKLEKA++LG+ I+ E  F  +L++
Sbjct: 623 IRVRGGKASGSVSKKTSFVVAGAEAGSKLEKAEKLGISILTEADFTQMLEE 673


>gi|218901495|ref|YP_002449329.1| DNA ligase, NAD-dependent [Bacillus cereus AH820]
 gi|254781549|sp|B7JM96|DNLJ_BACC0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218535434|gb|ACK87832.1| DNA ligase, NAD-dependent [Bacillus cereus AH820]
          Length = 669

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+V+++I ++R    + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVINVIFDKRTGGEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|172056504|ref|YP_001812964.1| DNA ligase, NAD-dependent [Exiguobacterium sibiricum 255-15]
 gi|254781332|sp|B1YJ17|DNLJ_EXIS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171989025|gb|ACB59947.1| DNA ligase, NAD-dependent [Exiguobacterium sibiricum 255-15]
          Length = 664

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 244/708 (34%), Positives = 392/708 (55%), Gaps = 51/708 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L Q+++ +   YY   +P + DS YD L R    +  A P+L     P+ P  +
Sbjct: 4   QARIEELRQKLNQYSYEYYVQDQPTVPDSTYDQLLRELTELETAHPELI---TPDSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G     +  KVTH +P LSL  +++  ++R+++ RI R   +    S  +  E K DG 
Sbjct: 61  VGAAALDAFEKVTHDLPMLSLGNVFDETEIREWVARIERSLGR----STTYVAELKFDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I+++YE G+ V  A RGDG  GE+++  +R I  +P  L L   E +EVRGE Y+ K  
Sbjct: 117 AISLKYEDGQLVRGATRGDGTVGENITQNLRTIKALP--LRLRRNETVEVRGEAYMPKQS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN +  A     +ANPRNAA+G LR+L+ +   +R L+ FV+G+G  + + A+   E
Sbjct: 175 FERLNADRAAREEALFANPRNAAAGSLRQLDSSITASRNLSLFVYGVG-VNTLSARSHSE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            + ++  LG P N  ++   T   I++Y       RS LPY+IDG+V KVD +  Q++LG
Sbjct: 234 AMLQLAELGLPTNKEMQTCETVEEILAYIAHWTMERSNLPYEIDGIVLKVDRYDDQEELG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPR+  ++KFA ++  T + ++D  +GRTG +TP AR  PV + G+ ++ ATLHN 
Sbjct: 294 FTAKSPRFATAYKFAAEEVMTTVEEVDFSVGRTGKVTPRARFAPVVVAGSTVSYATLHNA 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+ D+V++K+AG+VIP VV ++V+ER  + QP  FP+ CP 
Sbjct: 354 DFI-----------TEKDIRLHDQVIIKKAGDVIPAVVSVVVSERTGNEQPIEFPAHCPA 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S +VR          A  RC     C AQ +E + HFVSR A NI+GLG++ +   ++
Sbjct: 403 CESELVRLEGE------ADIRCVSP-ECPAQLVEGIIHFVSRQAMNIDGLGEKVVRQLYE 455

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     IR  AD++ L R +  +          G+ SV NL  +I   +  SLER +F 
Sbjct: 456 HEA----IRTLADLYRLDRDELLTY------ERMGETSVDNLLTAIEASKQNSLERLMFG 505

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG + A  LA+ + S    AQ           ++  ++ +  +G  IA ++ +++
Sbjct: 506 LGIRLVGQKAAYLLAERFDSLDGIAQA----------EYEDILAIDGIGSKIADSVTKYF 555

Query: 617 QNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           ++P     ++ L +       +G+     ++ +  K +V TGTL+ ++R +A + +  LG
Sbjct: 556 EHPEAQALIKDLAELGLNQQFLGQRVDQSNAPLAGKTIVLTGTLESLKRSEAGKRLELLG 615

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A V+  +S+KTDI++ G+  GSKL KA+ LG++I NE Q L  L +Y 
Sbjct: 616 ADVTGSVSKKTDILVAGEKAGSKLTKAESLGIEIWNETQLLEELAKYE 663


>gi|284053772|ref|ZP_06383982.1| NAD-dependent DNA ligase LigA [Arthrospira platensis str. Paraca]
          Length = 683

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 212/713 (29%), Positives = 353/713 (49%), Gaps = 47/713 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  ++L+ L   +      YY    PI+ D  YD L R    + + +P+L     P+ P 
Sbjct: 11  EISQKLAQLRLTVQRASYAYYVLDAPIMEDGVYDRLYRELQELENQYPELI---SPDSPT 67

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +       VTH+IP  SLE  +N+ +L+ +  +  RF          +  E KID
Sbjct: 68  QRVGEKPAAQFQSVTHNIPLYSLENAFNMAELQAWDEKWRRFLGDSLPQDPKYICELKID 127

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYIS 194
           G+ I + Y  G  V    RGDG +GED++  ++ I +IP  L   N P ++EVRGE ++S
Sbjct: 128 GSAIALTYHNGILVRGVTRGDGVTGEDITQNVKTIRSIPLKLHLDNPPPVVEVRGEAFLS 187

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
            + F+ +N E    G   +ANPRNAA+G LR+L+P  +      F               
Sbjct: 188 NHIFVQINQERQQTGEPLFANPRNAAAGTLRQLDPRIVADRRLDFFAYTLHLDSPNLHDH 247

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           ++ L+ ++ +GF VN   +   +   +  Y++   + R  LPY  DG+V K++  SLQKQ
Sbjct: 248 WDCLEFLQKMGFKVNPNRQLCQSLLEVQQYFDAWDTQRQQLPYMTDGVVVKLNSLSLQKQ 307

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LGE  + PRW I+ K+  ++  T+++ +  Q+GRTG LTPVA LEP+ + G  +  ATLH
Sbjct: 308 LGETRKFPRWAIALKYPAEELPTKIISVTFQVGRTGALTPVAELEPIQLAGTTVKRATLH 367

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N+D +  L           D+ +GD V+V++AGE+IP+VV ++ + R   A+  + P+ C
Sbjct: 368 NQDRLTEL-----------DLHIGDTVIVRKAGEIIPEVVRVLPDLRPTGAKLVTMPTHC 416

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C   V++          A  RC    +C A     + H+  R A +I G+G++ +   
Sbjct: 417 PECGETVIKTPAE------AVTRCINS-SCPAIVRGSIIHWCQRPALDINGIGEKLVHQL 469

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
             ++     +R  AD++ L   Q      +  +   G+ S   +  +I   +     R +
Sbjct: 470 VDAQ----LVRSVADLYDLNMDQ------LLELDRMGEKSAQKILAAIATSKQQPWHRVL 519

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           + LGIRHVG   A  LA+ + S Q+ A   +            +  V  +G  IA ++ +
Sbjct: 520 YGLGIRHVGKANADLLAQNFPSCQSLAAASSA----------QIEGVYGIGAEIATSVYQ 569

Query: 615 FYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++QNP NI   + L +        PS        +     K  V TGTL  + R +A+  
Sbjct: 570 WFQNPANISLCDRLQQAGLQLTSVPSTAPKSTPQAQPFAGKTFVLTGTLPTLSRDQAKSM 629

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +   G  V+  +++K D +++G+ PGSKL+KAQ L +  ++E  FL +++  N
Sbjct: 630 IENAGGKVTNSVTKKVDYLLLGEKPGSKLKKAQDLAIANLSESDFLAMIKSAN 682


>gi|237745525|ref|ZP_04576005.1| DNA ligase [Oxalobacter formigenes HOxBLS]
 gi|229376876|gb|EEO26967.1| DNA ligase [Oxalobacter formigenes HOxBLS]
          Length = 685

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 256/711 (36%), Positives = 396/711 (55%), Gaps = 49/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +      + L  EI  ++  YY    P++ D+EYD + R    +  A+P+L     P  P
Sbjct: 13  DTPESRAAKLRSEIERYNYAYYVLDAPVVPDAEYDRVFRELQELEAAYPELVV---PGSP 69

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG       KV H +P LSL+     E++  F  R+           + +  E K 
Sbjct: 70  TQRVGGAPLAQFDKVEHRLPMLSLQNGLTDEEVEAFDRRLGEELGIA---QVEYEAELKF 126

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193
           DG  +++RYEKG  V AA RGDG SGE+++A IR I ++P  LS    PE++EVRGEV +
Sbjct: 127 DGLAVSLRYEKGVLVQAATRGDGMSGENITANIRTIRSVPLHLSELAPPEVLEVRGEVLM 186

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF-A 251
            K DF  LN      G+K + NPRNAA+G LR+L+     +R L FF +G+G+       
Sbjct: 187 FKKDFQDLNRRQRESGQKEFVNPRNAAAGSLRQLDSQITASRQLKFFAYGIGELDGAPLP 246

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           + Q  +L     LG PV    +    F G++ ++  +++ R  LPY+IDG+VYKV+  S 
Sbjct: 247 ETQNRLLNWFVQLGIPVCEERKVVRGFKGLMGFFQAIEARRDALPYEIDGVVYKVNRLSE 306

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PR+ ++HKF  ++  T + DI++Q+GRTG +TPVARL+PV +GG  +TNA
Sbjct: 307 QQKLGFISRAPRFALAHKFPAQEVLTEVTDINVQVGRTGAITPVARLKPVFVGGVTVTNA 366

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED ++            +D+R+GD V+V+RAG+VIP+V+  +  +R  DA+ F  P
Sbjct: 367 TLHNEDEVRR-----------KDVRIGDTVIVRRAGDVIPEVIASVPEKRPADAREFVMP 415

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           + CP+C S +VR  +       A  RC+G  + C+AQ+   L+ F SR A NIEGLG+Q 
Sbjct: 416 ALCPVCGSPIVRPEDE------AIARCSGGWIKCAAQKKGGLQLFASRKAMNIEGLGEQL 469

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D     +     I   AD++ L     +       +    D S +NL D + + R  +L
Sbjct: 470 IDQLVDRQ----IINDAADLYRLDLETLSG------LDRMADKSASNLLDELGRSRETTL 519

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIRHVG   ARSLA+++ + Q+                  L+ V  +G ++A 
Sbjct: 520 SRFLYALGIRHVGETTARSLAEHFGNLQDLMNATE----------EQLLEVDDIGPVVAL 569

Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +I +F+ + RN   +  L  +    P     EK  +  ++++K V TGTL  + R  A E
Sbjct: 570 SIRQFFDDVRNRELIGKLQNDGVHWPERAMKEKPPALPLQDRKFVLTGTLSSLTREAAAE 629

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LG  VS  +S+KTD ++ G  PGSKL KAQ+LG++I++EE F+ L++
Sbjct: 630 IIRNLGGKVSNSVSKKTDYVLAGSEPGSKLAKAQELGIRILDEEAFVQLVK 680


>gi|293569137|ref|ZP_06680444.1| DNA ligase, NAD-dependent [Enterococcus faecium E1071]
 gi|291588184|gb|EFF20025.1| DNA ligase, NAD-dependent [Enterococcus faecium E1071]
          Length = 679

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 237/716 (33%), Positives = 389/716 (54%), Gaps = 53/716 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S  
Sbjct: 5   EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 62

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+ +   +     + +  
Sbjct: 63  -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRV----VDYCC 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  L   +   IEVRGE
Sbjct: 118 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMN--IEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ +     +
Sbjct: 176 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + SY  E    R  LPY+IDG+V KV+EF
Sbjct: 236 QAKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEF 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 296 SLQDQLGFTVKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V            A RC     C AQ  E LKHFVSR+A NI+GLG +
Sbjct: 405 LPTHCPVCGSELVHLDEE------VALRCINPK-CPAQMKEGLKHFVSRNAMNIDGLGPR 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +  +     +   AD++ L   +  +      +    + S  N+  +I+  ++ S
Sbjct: 458 VLEQMYDKK----LVADVADLYKLTEEELLT------LDKIKEKSANNILTAIDNSKDNS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSKS----------DYESIIALDTIGDIIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++V ++ N      +  L +       +       + V S  + K +V TG L +  R 
Sbjct: 558 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTRFTRE 617

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L +
Sbjct: 618 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMADALAK 673


>gi|257878462|ref|ZP_05658115.1| NAD-dependent DNA ligase [Enterococcus faecium 1,230,933]
 gi|257889341|ref|ZP_05668994.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,410]
 gi|257894353|ref|ZP_05674006.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,408]
 gi|258616016|ref|ZP_05713786.1| DNA ligase, NAD-dependent [Enterococcus faecium DO]
 gi|257812690|gb|EEV41448.1| NAD-dependent DNA ligase [Enterococcus faecium 1,230,933]
 gi|257825701|gb|EEV52327.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,410]
 gi|257830732|gb|EEV57339.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,408]
          Length = 678

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 236/716 (32%), Positives = 388/716 (54%), Gaps = 53/716 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S  
Sbjct: 4   EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 61

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+ +   +     + +  
Sbjct: 62  -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRV----VDYCC 116

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  L   +   IEVRGE
Sbjct: 117 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMN--IEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ +     +
Sbjct: 175 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + SY  E    R  LPY+IDG+V KV+EF
Sbjct: 235 QAKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEF 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 295 SLQDQLGFTIKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 355 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V            A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 404 LPTHCPVCGSELVHLDEE------VALRCINPK-CPAQMKEGLNHFVSRNAMNIDGLGPR 456

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +  +     +   AD++ L   +  +      +    + S  N+  +I+  ++ S
Sbjct: 457 VLEQMYDKK----LVADVADLYKLTEEELLT------LDKIKEKSANNILTAIDNSKDNS 506

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 507 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSKS----------DYESIIALDTIGDIIA 556

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++V ++ N      +  L +       +       + V S  + K +V TG L +  R 
Sbjct: 557 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTRFTRE 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L +
Sbjct: 617 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMADALAK 672


>gi|261207462|ref|ZP_05922148.1| NAD-dependent DNA ligase [Enterococcus faecium TC 6]
 gi|289565873|ref|ZP_06446314.1| DNA ligase, NAD-dependent [Enterococcus faecium D344SRF]
 gi|294618097|ref|ZP_06697694.1| DNA ligase, NAD-dependent [Enterococcus faecium E1679]
 gi|260078353|gb|EEW66058.1| NAD-dependent DNA ligase [Enterococcus faecium TC 6]
 gi|289162333|gb|EFD10192.1| DNA ligase, NAD-dependent [Enterococcus faecium D344SRF]
 gi|291595669|gb|EFF26965.1| DNA ligase, NAD-dependent [Enterococcus faecium E1679]
          Length = 679

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 236/716 (32%), Positives = 388/716 (54%), Gaps = 53/716 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S  
Sbjct: 5   EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 62

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+ +   +     + +  
Sbjct: 63  -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRV----VDYCC 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  L   +   IEVRGE
Sbjct: 118 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMN--IEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ +     +
Sbjct: 176 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + SY  E    R  LPY+IDG+V KV+EF
Sbjct: 236 QAKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEF 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 296 SLQDQLGFTVKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V            A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 405 LPTHCPVCGSELVHLDEE------VALRCINPK-CPAQMKEGLNHFVSRNAMNIDGLGPR 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +  +     +   AD++ L   +  +      +    + S  N+  +I+  ++ S
Sbjct: 458 VLEQMYDKK----LVADVADLYKLTEEELLT------LDKIKEKSANNILTAIDNSKDNS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSKS----------DYESIIALDTIGDIIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++V ++ N      +  L +       +       + V S  + K +V TG L +  R 
Sbjct: 558 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTRFTRE 617

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L +
Sbjct: 618 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMADALAK 673


>gi|229089420|ref|ZP_04220691.1| DNA ligase [Bacillus cereus Rock3-42]
 gi|228693897|gb|EEL47589.1| DNA ligase [Bacillus cereus Rock3-42]
          Length = 669

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSEALDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|228931797|ref|ZP_04094693.1| DNA ligase [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228827777|gb|EEM73515.1| DNA ligase [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 669

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|75759916|ref|ZP_00739987.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228899023|ref|ZP_04063296.1| DNA ligase [Bacillus thuringiensis IBL 4222]
 gi|74492583|gb|EAO55728.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228860598|gb|EEN04985.1| DNA ligase [Bacillus thuringiensis IBL 4222]
          Length = 669

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIELEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTILDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G++ GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGESAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|189219712|ref|YP_001940353.1| NAD-dependent DNA ligase [Methylacidiphilum infernorum V4]
 gi|254781365|sp|B3DWU2|DNLJ_METI4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189186570|gb|ACD83755.1| NAD-dependent DNA ligase [Methylacidiphilum infernorum V4]
          Length = 689

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 230/720 (31%), Positives = 374/720 (51%), Gaps = 49/720 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           + K++   +++L  E+ +K    L + I  +D  YY  + P++ D EYD L    + +  
Sbjct: 14  VNKKKAPSLDSLGYEEIKKRHDELVKLIRKYDYAYYVEAHPLVSDQEYDNLYHELETLEK 73

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P+L     P+ P  +IG        +VTH IP LSLE  ++ E+L  F+ RI R    
Sbjct: 74  LHPELI---TPDSPTQRIGETPLSGFSQVTHEIPMLSLENTYSKEELFAFLERIKRALPG 130

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSL 179
           K    I FT+EPKIDG  I+  Y+ G F   A RG+G  G+D++  ++ I ++P R+ + 
Sbjct: 131 K---KISFTVEPKIDGVSISAVYKNGLFSLGATRGNGTVGDDITQNLKTIRSLPLRLETP 187

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           + PE +EVRGE Y+S  DF  LN +    G+  +ANPRNA +G L++L+P     R L  
Sbjct: 188 DPPEYLEVRGEAYMSPKDFERLNAQREKEGKVLFANPRNATAGSLKQLDPRVVAERPLAV 247

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
             +G GK   +  K Q E L  ++ +G P+       +  + +     ++   R+ LPY 
Sbjct: 248 VFYGAGKLVGMKCKTQEEWLNFLKKIGLPIPIVFWVCSNENEVYEAIGKLNECRNQLPYP 307

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
            DG   KV+E+     LG  A++PRW  ++K+  ++A TRL ++  Q+GR+G +TPVA +
Sbjct: 308 TDGAAVKVNEWEYYSLLGYTAKAPRWAFAYKYGAERAKTRLNNVIFQVGRSGTITPVAEM 367

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV + G  ++ ATLHN D +K L           D+++GD V +++AGEVIP+VV + +
Sbjct: 368 DPVFLSGTTVSRATLHNFDQVKRL-----------DVKIGDVVYLEKAGEVIPEVVGVDL 416

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           N+R    +    P FCP C  ++  +            RC     C AQ  ER+ HF  R
Sbjct: 417 NQRRGTEKEIVPPEFCPSCGEKLSWE--------GIFLRC-ENENCPAQLKERILHFAQR 467

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           +A +I+GLG+  +D           ++  ADI+ L      +      +   G  S  NL
Sbjct: 468 NAMDIQGLGESLVDQLVDK----GIVKDVADIYDLDEETLVN------LDRMGKKSAQNL 517

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I + +   L R IF LGI H+G + +  LA+Y+ +    +                L
Sbjct: 518 LKAIEESKKKDLSRLIFGLGIPHIGQKASEDLARYFGTMDKLSHATE----------EEL 567

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
           + +P +G+I+A++IV +++   N   +E L K+    +    +  S  +  K  V TGTL
Sbjct: 568 LNLPFIGEIMARSIVNYFRKEANRRRLEKLRKKGLNFVSTLSQASSGTLSGKTFVITGTL 627

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +  R    + +   G  VS  LSRKT  ++VG +PGSKL++A++LG+ ++NE++ L +L
Sbjct: 628 SE-PRESIAQKIISKGGRVSNSLSRKTSYLVVGSDPGSKLQEAKKLGIPLINEQELLEML 686


>gi|33151983|ref|NP_873336.1| NAD-dependent DNA ligase LigA [Haemophilus ducreyi 35000HP]
 gi|81423646|sp|Q7VMX7|DNLJ_HAEDU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33148205|gb|AAP95725.1| DNA ligase [Haemophilus ducreyi 35000HP]
          Length = 686

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 249/707 (35%), Positives = 399/707 (56%), Gaps = 47/707 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +L +L  ++  ++  Y+  + P++ D+EYD L  +   I   +P+L     P+ P  ++G
Sbjct: 17  QLEALRDQLREYEYHYHVLNNPLVPDAEYDRLINQLKNIEQQYPELI---TPDSPTQRVG 73

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      +V H +P LSL+  ++  DL  F+ RI  +     +  + F  EPK+DG  +
Sbjct: 74  AKPLAGFAQVAHEMPMLSLDNAFSETDLDNFLRRIENYLSLDANQ-LTFCCEPKLDGLAV 132

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKNDF 198
           +I Y  G    AA RGDG +GE+++A +R I  IP      N P  +E+RGE+++    F
Sbjct: 133 SILYIDGVLQLAATRGDGTTGENITANVRTIRNIPLKLKMANPPHRLEIRGEIFMPLKGF 192

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF---AKGQ 254
            ALN   +A G K +ANPRNAA+G LR+L+P     R L    +G+G     +       
Sbjct: 193 NALNQRALAKGEKSFANPRNAAAGSLRQLDPQITRQRPLMLNAYGIGVYESNYQRLPTSH 252

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           Y  L+ ++ +G PVN  +R A  +  ++++Y ++++ R+ L YDIDG V KVD+ ++Q+ 
Sbjct: 253 YARLEWLKSIGIPVNAEIRLARGYPQLLAFYADIQAKRADLGYDIDGTVLKVDDITIQET 312

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEP  + G  ++NATLH
Sbjct: 313 LGFISRSPRWAIAYKFPAQEEMTILKDVEFQVGRTGAITPVAKLEPTLVAGVTVSNATLH 372

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            + +GD V+++RAG+VIP+++ I+ + R  +A+   FP+ C
Sbjct: 373 NGDEIERL-----------GVAIGDTVIIRRAGDVIPQIIGIVADRRPANAKKIVFPTAC 421

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S V+R          A  RCTGGL C AQ+ E LKHFVSR A NI+G+G++ ++  
Sbjct: 422 PVCHSAVIRIAGE------AVARCTGGLFCPAQRKEALKHFVSRKAMNIDGVGEKLIEQL 475

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              E     I  PAD+F L          +  +   G+ S  N  +SI K ++ +L RF+
Sbjct: 476 MARE----LIHTPADLFKL------DPLSLMRLERMGEKSAQNALNSIEKAKHTTLARFL 525

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           FSLGIR VG   A +LA ++ S +N              +   L  V  VG+++A  +V 
Sbjct: 526 FSLGIRDVGETTALNLANHFGSLENIRTA----------NVEQLKEVQDVGEVVANRLVC 575

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+Q   N+  VE L+ +        + +   + +++K +V TGTL +  R +A++ + QL
Sbjct: 576 FWQEQHNVAVVEELIAQGVHWDNIVQLEIADNPLKDKNVVLTGTLTQFSRDQARKLLQQL 635

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  VS+ +S KTD +I G+  G+KL KA+QLG++I++E  F  L++Q
Sbjct: 636 GCKVSSAVSTKTDFLIAGEKAGTKLTKAEQLGIRILDEHAFADLIKQ 682


>gi|186680717|ref|YP_001863913.1| NAD-dependent DNA ligase LigA [Nostoc punctiforme PCC 73102]
 gi|254781381|sp|B2J3P0|DNLJ_NOSP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|186463169|gb|ACC78970.1| DNA ligase, NAD-dependent [Nostoc punctiforme PCC 73102]
          Length = 678

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 231/713 (32%), Positives = 362/713 (50%), Gaps = 54/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K    L Q +      YY    PI+ DS YD L R    +   +P+L     P+ P  ++
Sbjct: 9   KRTEELRQLLQQASYAYYVLDTPIMEDSVYDQLYRELQQLEIQYPELTA---PDSPTQRV 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G         V H+IP  SLE  +NI++L+ +  R  R   K D  S+ +  E KIDG+ 
Sbjct: 66  GERPATQFTSVRHNIPLYSLENAFNIDELQGWDQRWRRQVPKID--SVEYVTELKIDGSA 123

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISK 195
           + + Y+ G  V    RGDG  GED++  +R I +IP       L I E +EVRGE ++  
Sbjct: 124 LALTYQDGILVRGTTRGDGVMGEDITQNVRTIRSIPLRLNFEGLEILERVEVRGEAFLPL 183

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL---GKTSEIFA 251
             F  +N+E    G + +ANPRNAA+G LR+L+      R L FF + L   G+     A
Sbjct: 184 EVFKQINEERQKAGEQLFANPRNAAAGTLRQLDSRIVAKRRLAFFGYTLHIPGRDDTSIA 243

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q+E L+ +  +GF VN   +   +   +  YY    + R  LPY  DG+V K++ F L
Sbjct: 244 NTQWEALELLEKMGFQVNPNHKLCASIAEVAKYYEYWDTERLNLPYMTDGVVVKLNSFKL 303

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG   + PRW I+ K+  ++A TR+ +I + +GRTG LTP+A + PV + G  ++ A
Sbjct: 304 QEQLGFTQKFPRWAIALKYPAEEAPTRVENIAVNVGRTGALTPLAEMRPVQLAGTTVSRA 363

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L           DIR+GD V+V++AGE+IP+VV ++   R  + +PF  P
Sbjct: 364 TLHNSDRIAQL-----------DIRIGDTVIVRKAGEIIPEVVRVLKELRPAETEPFVMP 412

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C   VVR+         A  RC    +C+A     ++H+VSRDA +I+GLG++ +
Sbjct: 413 THCPVCDQAVVRESGE------AVTRCVNA-SCAAILKGSIEHWVSRDALDIKGLGEKLV 465

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                       +   AD++ L   +  +      +   G  S   L D+I + +N    
Sbjct: 466 HQLVDKV----LVHSVADLYELTAEKLCA------LERMGQKSAEKLVDAIAQSKNQPWS 515

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LGIRHVG+  A+ L + Y + +  A    +           +  +  +G  IAQ+
Sbjct: 516 RVLYGLGIRHVGSVNAQLLTQKYFTVEQLATAKQS----------DIEGIYGIGAEIAQS 565

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSEIENKKLVFTGTLQKIQRHKAQ 667
           + ++++   N   +E L  E        E       +     K  V TGTL  ++R +A+
Sbjct: 566 VYQWFRIDANQRLIERLQAEGLQLTAPEETKAFGDGNQIFAGKTFVVTGTLPTLKRDEAK 625

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             + + G  V+  +S+KTD ++VG++ GSKLEKA  LG+  ++E Q L +L +
Sbjct: 626 ALIQKAGGKVTDSVSKKTDYLVVGEDAGSKLEKALSLGITQLSEAQLLEMLNE 678


>gi|69246831|ref|ZP_00604140.1| NAD-dependent DNA ligase [Enterococcus faecium DO]
 gi|260560049|ref|ZP_05832227.1| NAD-dependent DNA ligase [Enterococcus faecium C68]
 gi|293559999|ref|ZP_06676507.1| DNA ligase, NAD-dependent [Enterococcus faecium E1162]
 gi|294621040|ref|ZP_06700232.1| DNA ligase, NAD-dependent [Enterococcus faecium U0317]
 gi|314937827|ref|ZP_07845144.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a04]
 gi|314941627|ref|ZP_07848507.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133C]
 gi|314948874|ref|ZP_07852243.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0082]
 gi|314951008|ref|ZP_07854075.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133A]
 gi|314993009|ref|ZP_07858405.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133B]
 gi|314996456|ref|ZP_07861499.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a01]
 gi|68195064|gb|EAN09526.1| NAD-dependent DNA ligase [Enterococcus faecium DO]
 gi|260073884|gb|EEW62208.1| NAD-dependent DNA ligase [Enterococcus faecium C68]
 gi|291599354|gb|EFF30379.1| DNA ligase, NAD-dependent [Enterococcus faecium U0317]
 gi|291606087|gb|EFF35513.1| DNA ligase, NAD-dependent [Enterococcus faecium E1162]
 gi|313589438|gb|EFR68283.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a01]
 gi|313592532|gb|EFR71377.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133B]
 gi|313596863|gb|EFR75708.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133A]
 gi|313599518|gb|EFR78361.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133C]
 gi|313642858|gb|EFS07438.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a04]
 gi|313644664|gb|EFS09244.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0082]
          Length = 679

 Score =  542 bits (1395), Expect = e-152,   Method: Composition-based stats.
 Identities = 236/716 (32%), Positives = 388/716 (54%), Gaps = 53/716 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S  
Sbjct: 5   EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 62

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+ +   +     + +  
Sbjct: 63  -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRV----VDYCC 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  L   +   IEVRGE
Sbjct: 118 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMN--IEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ +     +
Sbjct: 176 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + SY  E    R  LPY+IDG+V KV+EF
Sbjct: 236 QAKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEF 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 296 SLQDQLGFTIKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V            A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 405 LPTHCPVCGSELVHLDEE------VALRCINPK-CPAQMKEGLNHFVSRNAMNIDGLGPR 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +  +     +   AD++ L   +  +      +    + S  N+  +I+  ++ S
Sbjct: 458 VLEQMYDKK----LVADVADLYKLTEEELLT------LDKIKEKSANNILTAIDNSKDNS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSKS----------DYESIIALDTIGDIIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++V ++ N      +  L +       +       + V S  + K +V TG L +  R 
Sbjct: 558 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTRFTRE 617

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L +
Sbjct: 618 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMADALAK 673


>gi|228983547|ref|ZP_04143752.1| DNA ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228776143|gb|EEM24504.1| DNA ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 669

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSEALDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKEINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|152974127|ref|YP_001373644.1| NAD-dependent DNA ligase LigA [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|190359228|sp|A7GKJ1|DNLJ_BACCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|152022879|gb|ABS20649.1| DNA ligase, NAD-dependent [Bacillus cytotoxicus NVH 391-98]
          Length = 669

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  ++ +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEAVQQRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLETENPEFI---TE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGAVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGVNVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  + RGDG +GED++  ++ I  IP  L   +   +EVRGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGSTRGDGITGEDITQNLKTIKAIPLRLQEEV--TLEVRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G LR+L+P     R L+ FV+GL       
Sbjct: 173 YMPKRSFVKLNEEKEQNGEAVFANPRNAAAGSLRQLDPKIAAKRNLSMFVYGLADIEGKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ITSHSEALDFLGELGFKTNPNRRICETIEEVIAYVEEWQEKRPNLDYEIDGIVIKVDDVT 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQERLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV+++ ++R    + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVVFDKRTGKEEAYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC    AC AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPTCDSGLVRLEEE------VALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+    A  IR  AD++ L + Q         +  FG+ S +NL  +I   +  SL
Sbjct: 455 ITQLFE----ANYIRTFADLYGLTKDQL------LQLDRFGEKSASNLVQAIEASKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+LA+++ +  N  +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTLAEHFETMDNLVKAGE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           +IV ++ N   +  ++           +  K     N++S    K +V TG L+ + R +
Sbjct: 555 SIVTYFDNEDVLHLIQQFKDYGVNMTYKGIKRADLQNIASYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD++I G+  GSKL +A++  ++I NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVIAGEAAGSKLAQAEKHNIEIWNEERFLQELNK 669


>gi|119512036|ref|ZP_01631131.1| DNA ligase [Nodularia spumigena CCY9414]
 gi|119463326|gb|EAW44268.1| DNA ligase [Nodularia spumigena CCY9414]
          Length = 678

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 229/711 (32%), Positives = 364/711 (51%), Gaps = 54/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L Q +      YY    P++ D+ YD L R    +   +P+      P+ P  ++
Sbjct: 9   KRVEELRQLLQQASYAYYVLDAPMMEDAVYDQLYRELQELEIKYPEFI---TPDSPTQRV 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +       V H+IP  SLE  +NI++L+ +  R  R   K +  ++ +  E KIDG+ 
Sbjct: 66  GEKPATHFTSVRHNIPLYSLENAFNIDELQIWDQRWRRQTPKIE--AVEYVSELKIDGSA 123

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISK 195
           + + YE G  V    RGDG  GED++  +R I +IP           E IEVRGEV++  
Sbjct: 124 LALTYENGILVRGVTRGDGVVGEDITQNVRTIRSIPLRLNFAGAKSLEKIEVRGEVFLPL 183

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL---GKTSEIFA 251
             F  +N E    G   +ANPRNAA+G LR+L+P     R L+FF + L   G      A
Sbjct: 184 EVFKQINAERQKAGEHIFANPRNAAAGTLRQLDPRIVAQRRLDFFAYTLHISGMDDASIA 243

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q+E L+ +  +GFPVN   +   +   +  YY    + R  LPY  DG+V K++ F L
Sbjct: 244 NTQWEALELLEKMGFPVNPNHKLCRSLTEVAQYYQSWDTKRLNLPYMTDGVVVKLNPFKL 303

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG   + PRW ++ K+A ++A TR+ +I + +GRTG LTP+A++ PV + G  ++ A
Sbjct: 304 QEQLGFTQKFPRWAVALKYAAEEAPTRVENISVNVGRTGALTPLAQMRPVQLAGTTVSRA 363

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L           DIR+GD V+V++AGE+IP+VV ++   R  D  PF  P
Sbjct: 364 TLHNSDRILQL-----------DIRIGDTVIVRKAGEIIPEVVRVLTELRPDDTVPFIMP 412

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C   VVR+         A  RC    +C+A     ++H+VSRDA +I+G+G++ +
Sbjct: 413 THCPVCGQPVVRESGE------AVTRCVNA-SCAAILRGEIEHWVSRDALDIKGMGEKLV 465

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                       +   AD++ L   +  +      +   G  S   L D+I + +N    
Sbjct: 466 HQLVDR----HLVNSVADLYDLTTERLCA------LERMGQKSAQKLIDAIAQSKNQPWS 515

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LGIRHVG+  A+ L + Y + +  A    +           +  +  +G  IAQ+
Sbjct: 516 RVLYGLGIRHVGSVNAQLLTQKYPTVEELATAKQS----------DIAGIYGIGAEIAQS 565

Query: 612 IVEFYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           + ++++   N   +E L  E     +        +V+  +  K  V TGTL  + R +A+
Sbjct: 566 VYQWFRIDANHVLIERLKAEGLQLAATEETTTAADVNQNLAGKTFVITGTLPSLSRDEAK 625

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + + G  V+  +S+KTD ++VG++ GSKLEKAQ LG+  ++E   L +L
Sbjct: 626 ALIQKAGGKVTNSVSKKTDYLLVGEDAGSKLEKAQALGITQLSEALLLEML 676


>gi|166216290|sp|Q0AHH6|DNLJ_NITEC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 683

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 253/716 (35%), Positives = 379/716 (52%), Gaps = 52/716 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S +   + L +L   I+ HD  YY    PII D++YD L R    +   +P L     P+
Sbjct: 3   SEKIIEERLKALRSTIALHDFHYYVQDAPIIPDADYDKLFRTLQQLEQQYPHLI---TPD 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G        ++TH  P LSL   +  ++   F  RI         + + + +EP
Sbjct: 60  SPTQRVGAPPLKVFARLTHQTPMLSLTNAFTEDEAIAFDKRIREALNV---DQVNYAVEP 116

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEV 191
           K DG  +++ Y  G     A RGDG++GED++  +R IP+IP    +  + +  EVRGEV
Sbjct: 117 KFDGLAVSLVYTNGILTNGATRGDGYTGEDITLNLRTIPSIPLRLQTATVTDQFEVRGEV 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG--LGKTSE 248
            + K DF  LN++    G K +ANPRNAA+G LR+L+      R L FF +   L    +
Sbjct: 177 VMLKADFEHLNEQQRNKGEKLFANPRNAAAGSLRQLDSNITAARKLTFFAYDAVLSHKDQ 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            F     E+L  ++   F V           G+++YY+EM ++R +LPY+IDG+VYKVD 
Sbjct: 237 PFFSKHSEILDYLKSQQFLVAQQNGTTTGVAGLLTYYHEMGALRLSLPYEIDGVVYKVDN 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q+ LG  +R+PR+ I+HKF  ++AST LL I+IQ+GRTG LTPVARL PV +GG  +
Sbjct: 297 LTQQETLGYVSRAPRFAIAHKFPAQEASTELLTIEIQVGRTGALTPVARLAPVFVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNATLHNED ++            + I +GD V+V+RAG+VIP+VV +I  +R   AQPF
Sbjct: 357 TNATLHNEDEVQR-----------KQIMIGDTVIVRRAGDVIPEVVAVIPEQRPAHAQPF 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S+  R          A  RCTGGL C AQ+ + + HF SR A +I+GLG+
Sbjct: 406 IMPDHCPVCGSKAARLPGE------AVTRCTGGLYCPAQRKQAIWHFASRRALDIDGLGE 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +D     E     +  PAD++ L      +   + ++    + S  NL  +I   +  
Sbjct: 460 KLIDQLIDRE----LVHTPADLYKL------NIDTLASLERMAEKSARNLVTAIEHSKKT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGIRHVG   A++LA                      D   L ++P VG I+
Sbjct: 510 TLPRFIYALGIRHVGEATAKALANQASHLDQLMTL----------DIEQLQQIPDVGPIV 559

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI-----GRHEKNVSSEIENKKLVFTGTLQKIQR 663
           AQ+I++F+    N   +  LL             +  +  +S +  K  V TGTL  + R
Sbjct: 560 AQSIIDFFSEAHNREVIRQLLDSGLQWEIPNHGVQQSEQTNSAVSGKTFVLTGTLPTMTR 619

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+  + Q G  V+  +S  T  ++ G +PGSK  KA  LG+ +++E+Q L LLQ
Sbjct: 620 DQAKIKIEQQGGKVTGSVSSATSYVVAGSDPGSKYAKAIGLGISVLDEDQLLSLLQ 675


>gi|114330949|ref|YP_747171.1| DNA ligase, NAD-dependent [Nitrosomonas eutropha C91]
 gi|114307963|gb|ABI59206.1| DNA ligase, NAD-dependent [Nitrosomonas eutropha C91]
          Length = 715

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 253/716 (35%), Positives = 379/716 (52%), Gaps = 52/716 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S +   + L +L   I+ HD  YY    PII D++YD L R    +   +P L     P+
Sbjct: 35  SEKIIEERLKALRSTIALHDFHYYVQDAPIIPDADYDKLFRTLQQLEQQYPHLI---TPD 91

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G        ++TH  P LSL   +  ++   F  RI         + + + +EP
Sbjct: 92  SPTQRVGAPPLKVFARLTHQTPMLSLTNAFTEDEAIAFDKRIREALNV---DQVNYAVEP 148

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEV 191
           K DG  +++ Y  G     A RGDG++GED++  +R IP+IP    +  + +  EVRGEV
Sbjct: 149 KFDGLAVSLVYTNGILTNGATRGDGYTGEDITLNLRTIPSIPLRLQTATVTDQFEVRGEV 208

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG--LGKTSE 248
            + K DF  LN++    G K +ANPRNAA+G LR+L+      R L FF +   L    +
Sbjct: 209 VMLKADFEHLNEQQRNKGEKLFANPRNAAAGSLRQLDSNITAARKLTFFAYDAVLSHKDQ 268

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            F     E+L  ++   F V           G+++YY+EM ++R +LPY+IDG+VYKVD 
Sbjct: 269 PFFSKHSEILDYLKSQQFLVAQQNGTTTGVAGLLTYYHEMGALRLSLPYEIDGVVYKVDN 328

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q+ LG  +R+PR+ I+HKF  ++AST LL I+IQ+GRTG LTPVARL PV +GG  +
Sbjct: 329 LTQQETLGYVSRAPRFAIAHKFPAQEASTELLTIEIQVGRTGALTPVARLAPVFVGGVTV 388

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNATLHNED ++            + I +GD V+V+RAG+VIP+VV +I  +R   AQPF
Sbjct: 389 TNATLHNEDEVQR-----------KQIMIGDTVIVRRAGDVIPEVVAVIPEQRPAHAQPF 437

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S+  R          A  RCTGGL C AQ+ + + HF SR A +I+GLG+
Sbjct: 438 IMPDHCPVCGSKAARLPGE------AVTRCTGGLYCPAQRKQAIWHFASRRALDIDGLGE 491

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +D     E     +  PAD++ L      +   + ++    + S  NL  +I   +  
Sbjct: 492 KLIDQLIDRE----LVHTPADLYKL------NIDTLASLERMAEKSARNLVTAIEHSKKT 541

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFI++LGIRHVG   A++LA                      D   L ++P VG I+
Sbjct: 542 TLPRFIYALGIRHVGEATAKALANQASHLDQLMTL----------DIEQLQQIPDVGPIV 591

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI-----GRHEKNVSSEIENKKLVFTGTLQKIQR 663
           AQ+I++F+    N   +  LL             +  +  +S +  K  V TGTL  + R
Sbjct: 592 AQSIIDFFSEAHNREVIRQLLDSGLQWEIPNHGVQQSEQTNSAVSGKTFVLTGTLPTMTR 651

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+  + Q G  V+  +S  T  ++ G +PGSK  KA  LG+ +++E+Q L LLQ
Sbjct: 652 DQAKIKIEQQGGKVTGSVSSATSYVVAGSDPGSKYAKAIGLGISVLDEDQLLSLLQ 707


>gi|320160951|ref|YP_004174175.1| DNA ligase [Anaerolinea thermophila UNI-1]
 gi|319994804|dbj|BAJ63575.1| DNA ligase [Anaerolinea thermophila UNI-1]
          Length = 674

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 248/717 (34%), Positives = 377/717 (52%), Gaps = 51/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S +   +E  +L+++I YHD  YY    P+I D+EYD L  R   I  A P+      P
Sbjct: 1   MSQDPLYQEYENLKKQIHYHDYRYYVLDDPVISDAEYDRLILRLKQIEFAHPEWI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       KV H  P LSL   +   D+  +I RI +   +       F LE
Sbjct: 58  DSPSQRVGGMPQDKFNKVRHPSPILSLANGFEKSDVLAWIERIRKLDARVATAD--FVLE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-----RVLSLNIPEIIE 186
           PKIDG  + + Y+ G FV  A RGDG  GED++A +R I ++P        ++ +PE + 
Sbjct: 116 PKIDGLTVVLTYQNGVFVQGATRGDGEVGEDITANLRTIRSLPLVIPVEQNNVPVPEWVV 175

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGE ++   DF  LN  +   G K Y NPRN A+G LR+L+P+   +R +N FV+ +  
Sbjct: 176 VRGEAFMFIKDFEELNKRLEQSGEKTYLNPRNTAAGSLRQLDPSLTASRPINIFVYAIVA 235

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           +S    + Q+E LQ ++  GFPV + V+   +   ++   ++ +  R TLPY+ DG+V K
Sbjct: 236 SSAPLPQTQWEQLQTLKAWGFPVASDVQYCASVEEVLKGLDQWREKRDTLPYEADGVVIK 295

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +++  L   LG   + PR  ++ KF  ++ STRLLDI + +GRTG+LTP A LEPV IGG
Sbjct: 296 INDLELASSLGYVGKDPRGALAFKFPAREISTRLLDIGVNVGRTGVLTPYAILEPVEIGG 355

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++  ATLHN D+I+            +DIR+GDRV+VKRAG+VIP V+  IV  R  D 
Sbjct: 356 VIVKQATLHNFDFIR-----------EKDIRIGDRVMVKRAGDVIPYVIGPIVELRTGDE 404

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F  P  CP C   V                    + C AQ +  ++HFVSR A +I G
Sbjct: 405 RVFIPPEMCPACGQPVSHVEGE-------VAWYCLNVTCPAQIIRNVEHFVSRGAMDIVG 457

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + ++   +       ++ PAD++ L +    +      + GF D    N+  +I   
Sbjct: 458 LGIKIVEQLVEK----GFVQSPADLYFLSKEDLLT------LEGFADKKAENILQAIQNS 507

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R+  L R I +LGIR VG  +A  LAK++ +    ++               L+ +  VG
Sbjct: 508 RSRPLSRLITALGIRGVGEVMAGELAKHFKNLDALSKAT----------VQQLMEIEGVG 557

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQR 663
             IAQ+IVE++ +  N   +  L +       +       S  +     V TGTL++  R
Sbjct: 558 PNIAQSIVEWFTHSGNQEFLRKLREAGVWPTEQTPVESVESLPLAGLTFVVTGTLKEFSR 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
              + Y+ +LGA V+  +SR T  ++VG+NPGSKLEKA+QLGV+I+ EE+   L+ +
Sbjct: 618 EGIKGYLERLGAKVTDSVSRNTSYLLVGENPGSKLEKARQLGVRIITEEELKQLVSK 674


>gi|238897965|ref|YP_002923645.1| DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|257096312|sp|C4K4K4|DNLJ_HAMD5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|229465723|gb|ACQ67497.1| DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 702

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 245/733 (33%), Positives = 395/733 (53%), Gaps = 67/733 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   ++++ L   + +H+  Y+    P I D+EYDAL  +       +P+L    +P+ 
Sbjct: 1   MKSMLEKINQLRDVLKHHEYLYHVNDAPEITDAEYDALLEKLREWESQYPELM---NPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---------- 123
           P  K+G   + +   VTH +P LSL+ +++ +    F  R+    + +            
Sbjct: 58  PTQKVGASPSTAFKPVTHQVPMLSLDNVFDEKGFLAFNKRVSERLEAESSAQKASLNPLV 117

Query: 124 --------------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRA 169
                          ++ F  E K+DG  +++ YEKG+   AA RG+G  GE+++  IR 
Sbjct: 118 RDSDQKNRSEKNVQEALTFCCELKLDGLAVSLIYEKGELTQAATRGNGFQGENITHNIRT 177

Query: 170 IPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN 228
           I +IP  L     P+ IE+RGEVY+ +  F  LN +  A   K ++NPRNAA+G LR+L+
Sbjct: 178 IQSIPLRLKGKALPQRIEIRGEVYMPQAGFEKLNKQARANHEKIFSNPRNAAAGSLRQLD 237

Query: 229 -PTDITRYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYN 286
                 R LNFF +G+G        +   + L +++  G PV++ +        ++++Y 
Sbjct: 238 PHITAQRPLNFFCYGVGLLEGGVLPQSHIQRLMQLKAWGLPVHDRITLCTGAEQVMAFYQ 297

Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQI 346
           E+   R+TL +DIDG+V KVD+  LQ++LG  A++PRW  + KF  ++ +T++L ++ Q+
Sbjct: 298 EIAQARATLGFDIDGIVIKVDDVLLQEKLGFLAKAPRWATAFKFPAQEKTTQVLGVEFQV 357

Query: 347 GRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRA 406
           GRTG LTPVARLEPV +GGAL++NA LHN D I  L            +R+GD V+V+RA
Sbjct: 358 GRTGALTPVARLEPVELGGALVSNANLHNADEIARL-----------GLRIGDTVVVRRA 406

Query: 407 GEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA 466
           G+VIP++V++I+  R  +     FP  CPIC+S   R          A  RCTGGL C A
Sbjct: 407 GDVIPQIVNVIIESRPQNTVEIIFPHHCPICKSVAKRIEGE------AVIRCTGGLFCPA 460

Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN 526
           Q+ E LKHFV+R A +IEGLG + +      +     ++ PAD+F L   +  S      
Sbjct: 461 QRKEALKHFVARRALDIEGLGDKIIHQLVDKK----YVQNPADLFHLTSEKLLS------ 510

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
           +    + S  NL +S+ K +  +  RF+++LGIR VG   A +LA Y+       +    
Sbjct: 511 LKRMREKSAQNLLNSLKKSQKTTFARFLYALGIREVGETTAANLALYFGQLDLLRKA--- 567

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
                  D  +L +VP VG+++A+ +V+F+ N  +   + AL   +        +  +  
Sbjct: 568 -------DIETLKKVPDVGEVVAKNLVDFFGNEHHQQVISALESVLDWPDPEPIEKPNHP 620

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
             +K +V TG+L    R   + ++  LGA VS  +S+KTD +I G+NPGSK +KA++ G+
Sbjct: 621 FRDKTVVLTGSLNAFTRDDLKAHLISLGAKVSGSVSKKTDFLIAGENPGSKAQKAEKSGI 680

Query: 707 KIMNEEQFLFLLQ 719
           KIMNE + +  L+
Sbjct: 681 KIMNEPELIEFLK 693


>gi|256820386|ref|YP_003141665.1| DNA ligase, NAD-dependent [Capnocytophaga ochracea DSM 7271]
 gi|256581969|gb|ACU93104.1| DNA ligase, NAD-dependent [Capnocytophaga ochracea DSM 7271]
          Length = 662

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 232/705 (32%), Positives = 368/705 (52%), Gaps = 49/705 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L +E++ H+  YY    P I D E+D   +   A+  A+P+     D N P  +
Sbjct: 2   KEKIQQLREELNEHNYNYYVLDNPTISDYEFDQKLKELQALEQAYPEF---YDENSPTVR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  S   V H     SL+  ++ EDL ++  RI +       + I FT E K DG 
Sbjct: 59  VGGSVTKSFPTVIHEYRMYSLDNSYSKEDLEEWEQRIIKTLG---SDQINFTCELKYDGA 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I + YE GK   A  RGDG  G+D++A +R I ++P  L  + PE   +RGE+ + K  
Sbjct: 116 SIDLLYENGKLKQATTRGDGIQGDDITANVRTIRSVPLQLKGDYPERFYIRGEIVMPKKA 175

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256
           F +LN E  A G  P+ NPRN ASG L+  +  +   R L+  ++ L        K Q+E
Sbjct: 176 FESLNKERTAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFL--VGNTGIKSQFE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K R  GF V N  +  ++   ++ + NE  + R TLPY+ DG+V KVD  + Q++LG
Sbjct: 234 SLEKAREWGFKVPNISKLCHSTAEVMDFINEWDTKRHTLPYETDGVVVKVDSIAQQEELG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++SPRW +++KF  +Q  T L  I  Q+GRTG +TPVA L+PV + G ++  A+LHN 
Sbjct: 294 YTSKSPRWAMAYKFKAEQVDTVLESISYQVGRTGAITPVANLKPVLLAGTVVKRASLHNA 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DIR+GD V V++ GE+IPK+V + +++R  DAQP  + + CP 
Sbjct: 354 DQIEKL-----------DIRIGDSVYVEKGGEIIPKIVGVNLDKREADAQPVKYITHCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + +VR+         A H C     C  Q   +++HF+SR A +IEGLG++ ++  F+
Sbjct: 403 CGTELVRNEGE------AQHYCPNAYGCPPQITGKIQHFISRKAMDIEGLGEETVEQLFR 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  I   AD++ +         K+  +      S  N+   I K + I  ER +F+
Sbjct: 457 ----AGIIHTYADLYEVTVE------KLLPLERMAQKSAENIVKGIQKSKEIPFERVLFA 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR+VG  +A+ LA++Y + +                   L+ V  +G+ IA +IV F+
Sbjct: 507 LGIRYVGETVAKKLARHYKTIEALENAT----------IEQLVEVDEIGNQIASSIVNFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            +  N   ++ L           +        ++    V +G      R + +  + Q G
Sbjct: 557 ADDYNRQLIDRLKGYGLQFSINEQATEGQTDTLKGLTFVVSGVFHLYSREELKALIEQHG 616

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
             V + +S KT+ +IVGDN G SK EKA+QLGVK+++EE+F  ++
Sbjct: 617 GKVGSSISSKTNYVIVGDNMGPSKKEKAEQLGVKMISEEEFNAMI 661


>gi|262375659|ref|ZP_06068891.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145]
 gi|262309262|gb|EEY90393.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145]
          Length = 679

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 248/717 (34%), Positives = 373/717 (52%), Gaps = 48/717 (6%)

Query: 12  LSIEQ-ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ++ +     ++  L Q ++ H+  YY   +P I DSEYD L  +  A+   +PDL +S  
Sbjct: 1   MTQDATVIAQMRQLIQLLAKHNHAYYVMDQPSIEDSEYDQLFHQLKALEQQYPDLIQS-- 58

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P +K+GG+       VTH++P LSL  ++N EDL  F  RI        +  I + +
Sbjct: 59  -DSPTDKVGGQALSKFVTVTHAVPMLSLGNVFNQEDLLAFARRIEERL---PNQKIEYDV 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR---VLSLNIPEIIEV 187
           E K DG  I++ YE G       RGDG +GED++  +R I  +P+    ++  IP+++EV
Sbjct: 115 ELKFDGLAISLWYEHGVLTRGVTRGDGETGEDITQNVRTIRNLPKLLSPVNGIIPDLLEV 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLG-K 245
           RGEV + K+ F  LN    A G K +ANPRNAA+G LR+L+P         F+ +G+   
Sbjct: 175 RGEVLMPKSGFEKLNAANAAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQC 234

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                       L+ +   GF V       ++   +   Y ++   R++L  +IDG+V K
Sbjct: 235 VPHHGQTTMSASLEWLHQFGFAVGERHFICDSIQDVQKVYEQIIDERASLSVEIDGMVIK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++   Q+QLG  +R PRW  ++KF    A T + +I+ Q+GRTG LTPVARL PV +GG
Sbjct: 295 VNDLKQQQQLGFLSREPRWATAYKFPAVAALTTVENINWQVGRTGTLTPVARLNPVAVGG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++N TLHN   I  L           D+R+GD V V R+G+VIPKV  +    R  DA
Sbjct: 355 VTVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRSGDVIPKVEKVWPEFRPVDA 403

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                P  CP+C S VV           A  RC+GGL C+AQ++E ++HFVSR A +IEG
Sbjct: 404 VEVHLPEQCPVCDSPVVMPEGE------ALARCSGGLYCAAQRIEAIRHFVSRKAMDIEG 457

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +  +           +   +DI+ L   ++     +  I   G  SV NL D+I   
Sbjct: 458 LGDRWAESLLH----LNLLNDVSDIYHLHEHRE----TLLGIEKMGAKSVQNLLDAIENS 509

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  +L  FI++LGIR VG   AR LA  + +     Q           D  +L + P VG
Sbjct: 510 KKTTLAAFIYALGIRGVGETTARMLANTFQTLDALRQA----------DLEALKKTPDVG 559

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           DI A+ I++F+Q P N+  ++ LL                 +  +  V TGTL  + R  
Sbjct: 560 DITAEWILDFFQAPHNLEVLDRLLAAG-IHWDAPIAPTRQPLNGESWVVTGTLSSMGRDD 618

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A + +  LGA VS  +S KT  ++ G+  GSKL+KA++LG+ ++NE+QF+ L+Q Y 
Sbjct: 619 ATQLLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAEKLGIPVINEQQFIGLMQDYG 675


>gi|229194680|ref|ZP_04321473.1| DNA ligase [Bacillus cereus m1293]
 gi|228588783|gb|EEK46808.1| DNA ligase [Bacillus cereus m1293]
          Length = 669

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 390/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +EVRGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEVRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+    A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFE----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|52144941|ref|YP_081888.1| NAD-dependent DNA ligase LigA [Bacillus cereus E33L]
 gi|81689708|sp|Q63GS3|DNLJ_BACCZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|51978410|gb|AAU19960.1| DNA ligase(NAD+) (NAD-dependent DNA ligase) [Bacillus cereus E33L]
          Length = 669

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKTINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|257887196|ref|ZP_05666849.1| NAD-dependent DNA ligase [Enterococcus faecium 1,141,733]
 gi|257823250|gb|EEV50182.1| NAD-dependent DNA ligase [Enterococcus faecium 1,141,733]
          Length = 678

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 236/720 (32%), Positives = 391/720 (54%), Gaps = 53/720 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S  
Sbjct: 4   EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 61

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+ +   +     + +  
Sbjct: 62  -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRV----VDYCC 116

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  L   +   IEVRGE
Sbjct: 117 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMN--IEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ +     +
Sbjct: 175 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + +Y  E    R  LPY+IDG+V KV+EF
Sbjct: 235 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 295 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 355 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V            A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 404 LPTHCPVCGSELVHLDEE------VALRCINPK-CPAQMKEGLNHFVSRNAMNIDGLGPR 456

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +  +     +   AD++ L   +  +      +    + S  N+  +I+  ++ S
Sbjct: 457 VLEQMYDKK----LVADVADLYKLTEEELLT------LDKIKEKSANNILTAIDNSKDNS 506

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 507 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSRS----------DYESIIALDTIGDIIA 556

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++V ++ N      +  L +       +       + V S  + K +V TG L ++ R 
Sbjct: 557 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTRLTRE 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L Q ++ 
Sbjct: 617 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMAEALAQSHSA 676


>gi|218895413|ref|YP_002443824.1| DNA ligase, NAD-dependent [Bacillus cereus G9842]
 gi|228963387|ref|ZP_04124548.1| DNA ligase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|254781550|sp|B7IUW5|DNLJ_BACC2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218545091|gb|ACK97485.1| DNA ligase, NAD-dependent [Bacillus cereus G9842]
 gi|228796281|gb|EEM43728.1| DNA ligase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 669

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTILDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G++ GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGESAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|320105506|ref|YP_004181096.1| NAD-dependent DNA ligase [Terriglobus saanensis SP1PR4]
 gi|319924027|gb|ADV81102.1| DNA ligase, NAD-dependent [Terriglobus saanensis SP1PR4]
          Length = 694

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 236/737 (32%), Positives = 364/737 (49%), Gaps = 73/737 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E   +  S L  EI +H+  YY   KP I D++YDAL     A+    P+L     P
Sbjct: 1   MSPE---QRASELRAEIEHHEHAYYVLDKPEISDAQYDALVNLLKALETEHPELV---TP 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++GG+      KV HS P LSL+  +N  +LR +  R+         +++ +T E
Sbjct: 55  ESPTQRVGGKPREGFAKVAHSRPMLSLDNAYNEAELRAWAERVTTSL--PASDAVEYTCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP------RVLSLNIPEII 185
            K+DG  + + YE G+ V    RGDG  GEDV++ +R I ++P      ++ +  +P   
Sbjct: 113 YKLDGLSLALHYENGQLVRGVTRGDGSVGEDVTSNVRTIRSVPLRIAAAKLKAAGLPGTF 172

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244
           EVRGEV + ++ F  LN +  A G+   ANPRNAA+G +R + P+    R L+F+ + L 
Sbjct: 173 EVRGEVVMPQSAFEELNRQREAAGQAAAANPRNAAAGTIRTIEPSIVAQRRLDFYAYFLL 232

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +  +   K Q   L  +R  GF VN   R   T   ++ +  + ++ R  L Y+IDG+V 
Sbjct: 233 RDGDTLLKSQQATLDALRATGFRVNAQARTVGTIDEVLGFIAQAEAERDGLGYEIDGVVI 292

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  +LQK+LG   ++PRW I++KF  +   T+L  +  Q+GRTG LTPVA L+P+ IG
Sbjct: 293 KVNATALQKRLGFTGKAPRWAIAYKFPARAGVTQLRGVIFQVGRTGKLTPVADLQPIFIG 352

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP- 423
           G  +T ATLHN D I+ L            +++GD V V+R G+VIPK+  ++ ++ H  
Sbjct: 353 GTTVTRATLHNADEIERL-----------GLKIGDHVSVERGGDVIPKITHVVEDKIHAR 401

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             +   FP+ CP C   VVR+            RC    +C A+  E L+HF SR   NI
Sbjct: 402 GTEEIVFPTVCPRCGEPVVREEGE------VDWRCVNA-SCPARLEEELRHFASRGVMNI 454

Query: 484 EGLGKQQLDFF----------------------FKSEDPAFSIRIPADIFTLQRRQQTST 521
           EGLG+  +                          ++      +   ADI+ L   Q    
Sbjct: 455 EGLGESLVAQLLGHTVAEAVDATAGVGEGEESVAEAPTREALVHSVADIYGLTLEQLMG- 513

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
                +   G  S  +L   I K ++  L R +  LGIRHVG   A++LA+ + S     
Sbjct: 514 -----LERIGQKSAESLLAEIEKSKSAPLSRVLLGLGIRHVGERTAQTLAEEFGSMDALI 568

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
                           L RV  VG  +A+AI E++ N +N+  V+ L            +
Sbjct: 569 SATE----------EDLTRVNDVGPKVAEAIREWFANEKNLLLVQRLKDAGLTMTAEKRE 618

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
             +  +     V TGTL  + R  A+E +   G  VS  +S+KT  ++ G++ GSKLEKA
Sbjct: 619 RGTQ-LAGMTFVLTGTLPTLTRDTAKEKIEAAGGKVSGSVSKKTTYVVAGEDAGSKLEKA 677

Query: 702 QQLGVKIMNEEQFLFLL 718
           ++LG+ +++E   L +L
Sbjct: 678 RELGIAVLDEAGLLEML 694


>gi|206974389|ref|ZP_03235306.1| DNA ligase, NAD-dependent [Bacillus cereus H3081.97]
 gi|217957864|ref|YP_002336408.1| NAD-dependent DNA ligase LigA [Bacillus cereus AH187]
 gi|254781553|sp|B7HSW5|DNLJ_BACC7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781554|sp|B9J1L6|DNLJ_BACCQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206747629|gb|EDZ59019.1| DNA ligase, NAD-dependent [Bacillus cereus H3081.97]
 gi|217064176|gb|ACJ78426.1| DNA ligase, NAD-dependent [Bacillus cereus AH187]
          Length = 669

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 245/715 (34%), Positives = 389/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV+++ ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVLFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+    A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFE----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|313159317|gb|EFR58681.1| DNA ligase (NAD+) [Alistipes sp. HGB5]
          Length = 694

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 221/704 (31%), Positives = 358/704 (50%), Gaps = 47/704 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            R+ +  L +++ YH+  YY  + P I D E+DA+ R    +  A P++A   DPN P  
Sbjct: 2   IRERIEELRRQLEYHNFRYYVENAPEISDFEFDAMMRELQDLERAHPEMA---DPNSPSV 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++      V H  P LSL   ++ ++L +FI RI +     +     F  E K DG
Sbjct: 59  RVGSDITAEFRSVKHRFPMLSLGNTYSPDELHEFIERIEK-----ETGPTEFVCELKFDG 113

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
           T I++ YE G+ + A  RGDG  G+DV+A +R + T+P  L  +  P+  E+RGE+ +  
Sbjct: 114 TAISLTYEHGRLLRAVTRGDGTQGDDVTANVRTVRTVPLRLRGDDWPDYFEIRGEILMPY 173

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
             F  +N E  A G   +ANPRNAA+G L++     + R             ++     +
Sbjct: 174 ASFDKINAEREAAGETLFANPRNAAAGTLKQQASAVVARRGLDCTLYQLAGDDLPFTNHW 233

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQK R  GF +++ +R   +   I +Y       R  LP+  DG+V KV++F +++QL
Sbjct: 234 ESLQKAREWGFKISDQMRICRSAEEIDAYIAHWDEARRELPFPTDGVVIKVNDFGVRRQL 293

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A++P+W +++KF  +QA TRL  +  Q+GRTG +TPVA LEPV + G  +  ATLHN
Sbjct: 294 GFTAKAPKWAVAYKFKAEQALTRLDSVAFQVGRTGAITPVANLEPVLLAGTTVRRATLHN 353

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            + +  L           DIR GD V V++ GE+IPK+  + +++R  D++PF + + CP
Sbjct: 354 AEQMALL-----------DIRPGDMVYVEKGGEIIPKITGVELSQRPADSRPFEYITVCP 402

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +V+          A H C     C  Q + R+ HF+ R A +IEGLG++ ++  +
Sbjct: 403 ECGTPLVKYEGE------AKHYCPNQGGCRPQIIGRIIHFIRRKAMDIEGLGEETVELLY 456

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           ++      +R  AD++ LQ  Q         +   G+ S  N+  SI     +   R +F
Sbjct: 457 EN----GLVRDVADLYDLQAPQL------ACLPRLGEKSADNIIRSIRGSVEVPFRRVLF 506

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIR VG   A+ LA+++ S     +               L     VG  IA AI+E+
Sbjct: 507 GLGIRFVGETTAKYLAEHFRSLDAVMKATR----------EELTEADEVGGRIADAIIEY 556

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           + + +N+  +  L            +  S  +  K  V +G      R + +E +   G 
Sbjct: 557 FADEKNLAIIRRLRDAGVKFEAEARELASESLAGKSFVISGKFSNHSRDELKELIEIHGG 616

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
              A +S   D I+ G+N G +KL+KA++LGVKI++EE F+ ++
Sbjct: 617 RNLAAVSANVDYIVAGENMGPAKLKKAEKLGVKIISEEDFIAMI 660


>gi|229159446|ref|ZP_04287464.1| DNA ligase [Bacillus cereus R309803]
 gi|228624017|gb|EEK80825.1| DNA ligase [Bacillus cereus R309803]
          Length = 669

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQENLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDGLVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKSADLQNVESYFAGKTVVLTGKLEIMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|30018549|ref|NP_830180.1| NAD-dependent DNA ligase LigA [Bacillus cereus ATCC 14579]
 gi|229125792|ref|ZP_04254818.1| DNA ligase [Bacillus cereus BDRD-Cer4]
 gi|81436035|sp|Q81IP2|DNLJ_BACCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|29894090|gb|AAP07381.1| NAD-dependent DNA ligase [Bacillus cereus ATCC 14579]
 gi|228657649|gb|EEL13461.1| DNA ligase [Bacillus cereus BDRD-Cer4]
          Length = 669

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|291569184|dbj|BAI91456.1| DNA ligase [Arthrospira platensis NIES-39]
          Length = 683

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 212/713 (29%), Positives = 355/713 (49%), Gaps = 47/713 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  ++L+ L   +      YY    PI+ D  YD L R    + + +P+L     P+ P 
Sbjct: 11  EISQKLAQLRLTVQRASYAYYVLDDPIMEDGVYDRLYRELQELENQYPELI---SPDSPT 67

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +       VTH+IP  SLE  +N+ +L+ +  +  RF          +  E KID
Sbjct: 68  QRVGEKPAAQFQSVTHNIPLYSLENAFNMAELQAWDEKWRRFLGDSLPQDPKYICELKID 127

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYIS 194
           G+ I + Y  G  V    RGDG +GED++  ++ I +IP  L   N P ++EVRGE ++S
Sbjct: 128 GSAIALTYHNGILVRGVTRGDGVTGEDITQNVKTIRSIPLKLHLDNPPPVVEVRGEAFLS 187

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
            + F+ +N E    G   +ANPRNAA+G LR+L+P  +      F               
Sbjct: 188 NHIFVQINQERQQTGEPLFANPRNAAAGTLRQLDPRIVADRRLDFFAYTLHLDSPNLHDH 247

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           ++ L+ ++ +GF VN   +   +   +  Y++   + R  LPY  DG+V K++  SLQKQ
Sbjct: 248 WDCLELLQKMGFKVNPNRQLCQSLLEVQQYFDAWDTQRRELPYMTDGVVVKLNSLSLQKQ 307

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LGE  + PRW I+ K+  ++  T+++ +  Q+GRTG LTPVA LEP+ + G  +  ATLH
Sbjct: 308 LGETRKFPRWAIALKYPAEELPTKIISVTFQVGRTGALTPVAELEPIQLAGTTVKRATLH 367

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N+D +  L           D+ +GD V+V++AGE+IP+VV ++ + R   A+  + P+ C
Sbjct: 368 NQDRLTEL-----------DLHIGDTVIVRKAGEIIPEVVRVLPDLRPTGAKLVTMPTHC 416

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C   V++          A  RC    +C A     + H+  R A +I G+G++ +   
Sbjct: 417 PECGETVIKTPAE------AVTRCINS-SCPAIVRGSIIHWCQRPALDINGIGEKLVQQL 469

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
             ++     +R  AD++ L   Q      +  +   G+ S   +  +I   +     R +
Sbjct: 470 VDAQ----LVRSVADLYDLNMDQ------LLELDRMGEKSAQKILAAIATSKQQPWHRVL 519

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           + LGIRHVG   A+ LA+ + S Q+ A   +            +  V  +G  IA ++ +
Sbjct: 520 YGLGIRHVGKANAQLLAQNFPSCQSLAAASSA----------QIEGVYGIGAEIATSVYQ 569

Query: 615 FYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++QNP NI   + L +        PS      + +     K  V TGTL  + R +A+  
Sbjct: 570 WFQNPANISLCDRLQQAGLQLTSVPSTAPKSTHQAQPFAGKTFVLTGTLPTLSRDQAKSM 629

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +   G  V+  +++K D +++G+ PGSKL+KAQ L +  ++E  FL +++  N
Sbjct: 630 IENAGGKVTNSVTKKVDYLLLGEKPGSKLKKAQDLAIANLSESDFLAMIKSAN 682


>gi|258592875|emb|CBE69184.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [NC10
           bacterium 'Dutch sediment']
          Length = 684

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 232/715 (32%), Positives = 365/715 (51%), Gaps = 56/715 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R ++  L Q I  H+  YY   +P I D+E+D L +R   +    P+L     P+ P  +
Sbjct: 8   RAQVDDLRQLIRRHEYLYYVLDRPEITDAEFDTLYQRLQTLETQHPELI---TPDSPTQR 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG        V H    LSL+  +N E+LR+F  RI R           + +EPK+DG 
Sbjct: 65  VGGRPVEGFASVQHKAAMLSLDNAYNAEELREFEARIKRAL---PGERFTYVVEPKVDGL 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII--EVRGEVYISK 195
            + + YE G+ V  A RGDG  GEDV+  +  +  IPR L   +      EVRGE++I +
Sbjct: 122 SVALLYEGGRLVRGATRGDGRYGEDVTQNLMTVRGIPRYLHGPLAACAALEVRGEIFIWR 181

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254
             F  LN E+ A G +P+ANPRNAA+G +R+ +P     R L+ F++G+           
Sbjct: 182 QAFEKLNRELEAEGEEPFANPRNAAAGSVRQKDPRITEVRRLDIFIYGVSYAEPDPFTEH 241

Query: 255 YEMLQKMRCLGFPVNN---------GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           ++ + ++   GF ++            R+     G++  Y E+++ R  +  D DG+V K
Sbjct: 242 WQTMGQLLEAGFLLDPQDRKNTLERYRRRCADIDGVIQAYLEIEAARDEIGCDCDGVVVK 301

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD    Q++LG     PRW +++KF  +QA++ +  ID+ +GRTG LTP A L+PV I G
Sbjct: 302 VDAIEQQRRLGSTTHHPRWAVAYKFPARQATSIIRKIDVNVGRTGALTPTALLDPVEIAG 361

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           A I+ ATLHN D I+ L           DIR GD VL++RAG+VIP ++ +I  +R PD+
Sbjct: 362 ATISRATLHNADEIERL-----------DIREGDTVLIERAGDVIPHILRVIQEKRPPDS 410

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            PF FP  CP+C ++  R             RCT   AC A+  E L HF +R A +IE 
Sbjct: 411 TPFCFPGQCPVCNAQAFRPEGE------VVSRCTNS-ACLARLKESLLHFGARRAMDIEH 463

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG+  ++     +     +R  AD++ L          +  +      S TNL+++I   
Sbjct: 464 LGEAVVEQLVDRK----LVRELADLYRL------DVATLAELERLAQKSATNLHNAIQGS 513

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   L R +F+LGIR+VG  +A  LA++Y S     Q               L  +  +G
Sbjct: 514 KGRGLSRLLFALGIRYVGEHVATILARHYGSMDRLEQAPE----------EELAEIFGIG 563

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             IAQ++  +++ P N   +E L +                +  K  V TG L+ + R +
Sbjct: 564 PRIAQSVALYFRQPENRRQIEQLREVGVSMKEAGVTAEPRPLAGKTFVLTGGLEGLTRDE 623

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+E + ++G  V++ +S+KTD ++VG +PGSK + A++LGV  ++E  F  L+ +
Sbjct: 624 AKELIVRVGGRVTSTVSKKTDFVVVGKDPGSKFDDAKRLGVPTLDEVAFKELVSR 678


>gi|332525978|ref|ZP_08402119.1| DNA ligase (NAD+) [Rubrivivax benzoatilyticus JA2]
 gi|332109529|gb|EGJ10452.1| DNA ligase (NAD+) [Rubrivivax benzoatilyticus JA2]
          Length = 686

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 247/717 (34%), Positives = 374/717 (52%), Gaps = 49/717 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S   A +  + L + +S+H   YY    P I D+EYD L +   AI    PDL     P
Sbjct: 1   MSPTSAAERAAELRRILSHHAHRYYVLDAPEIPDAEYDRLFQELQAIESEHPDLL---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI--EDLRKFITRIYRFWQKKDD-NSIFF 128
           + P  +I G++   L  V H++  LS+    +        F  R+ R  +  DD   + +
Sbjct: 58  DSPTQRIIGQVLPGLVPVRHAVAMLSIRTETDTTAAGAEAFDARVRRELELGDDAPPVEY 117

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E K DG  I +RY  G  V AA RGDG +GEDV+  IR I  IP  L    P ++EVR
Sbjct: 118 AAELKFDGLAINLRYVAGLLVQAATRGDGETGEDVTHNIRTIGQIPLRLFGTAPPVLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247
           GEVY+ ++DF  LN+     G K + NPRN A+G +R+L+  +   + L+F+ +GLG+  
Sbjct: 178 GEVYMRRDDFERLNERQREKGAKTFINPRNTAAGAVRQLDSRSLADKRLSFYAYGLGEVQ 237

Query: 248 -EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                      L  +   G PVN          G+V+++  + + R  LP+DIDG+VYKV
Sbjct: 238 GWEQPPTHSGTLDALAAFGLPVNGERAVVQGADGLVAFHRRIAAARDALPFDIDGVVYKV 297

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQK+LG   R PRW ++HK+  ++  TRL  I+IQ+GRTG LTPVA+LEPV +GG 
Sbjct: 298 NDIALQKRLGFVTREPRWAVAHKYPAQEQMTRLNAIEIQVGRTGKLTPVAKLEPVFVGGT 357

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN   ++            + +RVGD V+V+RAG+VIP+VV  +  ER     
Sbjct: 358 TVSNATLHNLFELRR-----------KGVRVGDDVIVRRAGDVIPEVVGRVPGERAGYVP 406

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  P  CP+C S V R+           HRC+GGL C+AQ+ + L HF  R A +IEGL
Sbjct: 407 NFRMPRQCPVCGSAVARERG------GIDHRCSGGLFCAAQRKQALLHFAGRRAMDIEGL 460

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D           IR   +++TL         K+  +    + S  NL  ++++ +
Sbjct: 461 GDKLVDQLVD----GGLIRTLPELYTL------GVAKLSALERMAEKSAANLVAALDRSK 510

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RF+++LGIR VG   A+ LA+++                       L+ V  VG 
Sbjct: 511 QTTLARFLYALGIRQVGEATAKDLARHFGGLDRVMDA----------SVEQLLEVRDVGP 560

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH----EKNVSSEIENKKLVFTGTLQKIQ 662
           I+AQ+I  F++ P N   VE L                   +  +  K LV TGTL  + 
Sbjct: 561 IVAQSIRTFFEQPHNREVVEQLRAAGIRWDEHEGAAVANAAALPLAGKTLVLTGTLPTLS 620

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R +A+E +   G  V+  +S+KT  ++ G+  GSKL+KA++LG+++++E+    LLQ
Sbjct: 621 REQAKEMIEAAGGKVAGSVSKKTHYVVAGEEAGSKLDKARELGIEVLDEDGLRRLLQ 677


>gi|315223456|ref|ZP_07865313.1| NAD-dependent DNA ligase LigA [Capnocytophaga ochracea F0287]
 gi|314946629|gb|EFS98620.1| NAD-dependent DNA ligase LigA [Capnocytophaga ochracea F0287]
          Length = 662

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 233/705 (33%), Positives = 368/705 (52%), Gaps = 49/705 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L +E++ H+  YY    P I D E+D   +   A+  A+P+     D N P  +
Sbjct: 2   KEKIQQLREELNEHNYNYYVLDNPTISDYEFDQKLKELQALEQAYPEF---YDENSPTVR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  S   V H     SL+  ++ EDL ++  RI +       + I FT E K DG 
Sbjct: 59  VGGSVTKSFPTVVHEYRMYSLDNSYSKEDLEEWEQRIIKTLG---SDQINFTCELKYDGA 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I + YE GK   A  RGDG  G+D++A +R I ++P  L  + PE   +RGE+ + K  
Sbjct: 116 SIDLLYENGKLKQATTRGDGIQGDDITANVRTIRSVPLQLKGDYPERFYIRGEIVMPKKA 175

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E IA G  P+ NPRN ASG L+  +  +   R L+  ++ L        K Q+E
Sbjct: 176 FENLNKERIAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFL--VGNTGIKSQFE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K R  GF V N  +  ++   ++ + NE  + R TLPY+ DG+V KVD  + Q++LG
Sbjct: 234 SLEKAREWGFKVPNISKLCHSTAEVMDFINEWDTKRHTLPYETDGVVVKVDSIAQQEELG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++SPRW +++KF  +Q  T L  I  Q+GRTG +TPVA L+PV + G ++  A+LHN 
Sbjct: 294 YTSKSPRWAMAYKFKAEQVDTVLESISYQVGRTGAITPVANLKPVLLAGTVVKRASLHNA 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DIR+GD V V++ GE+IPK+V + +++R  DAQP  + + CP 
Sbjct: 354 DQIEKL-----------DIRIGDSVYVEKGGEIIPKIVGVNLDKREVDAQPVKYITHCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + +VR+         A H C     C  Q   +++HF+SR A +IEGLG++ ++  F+
Sbjct: 403 CGTELVRNEGE------AQHYCPNAYGCPPQITGKIQHFISRKAMDIEGLGEETVEQLFR 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  I   AD++ +         K+  +      S  N+   I K + I  ER +F+
Sbjct: 457 ----AGIIHTYADLYEVTVE------KLLPLERMAQKSAENIVKGIQKSKEIPFERVLFA 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR+VG  +A+ LA++Y + +                   L+ V  +G+ IA +IV F+
Sbjct: 507 LGIRYVGETVAKKLARHYKTIEALENAT----------VEQLVEVDEIGNQIASSIVNFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            +  N   ++ L           +        ++    V +G      R + +  + Q G
Sbjct: 557 ADDYNRQLIDRLKGYGLQFSINEQATEGQTDTLKGLTFVVSGVFHLYSREELKALIEQHG 616

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
             V + +S KT+ +IVGDN G SK EKA+QLGVK+++EE+F  ++
Sbjct: 617 GKVGSSISSKTNYVIVGDNMGPSKKEKAEQLGVKMISEEEFNAMI 661


>gi|152965283|ref|YP_001361067.1| DNA ligase, NAD-dependent [Kineococcus radiotolerans SRS30216]
 gi|190359261|sp|A6W7L4|DNLJ_KINRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|151359800|gb|ABS02803.1| DNA ligase, NAD-dependent [Kineococcus radiotolerans SRS30216]
          Length = 696

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 217/720 (30%), Positives = 346/720 (48%), Gaps = 39/720 (5%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR     L  +I      YY  +   + D +YDAL+R   A+    P L     P+ 
Sbjct: 10  PSEARHRWEDLVAQIEAARFAYYVRNSSPLSDGQYDALERELRALEEQHPQL---RTPDS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +GG  +     V H    LSL+  ++ ++L  +  R+ R           +  EPK
Sbjct: 67  PTQTVGGTFSTEFTTVDHPERMLSLDNAFSTDELSAWAARVEREVGAGA----RYLCEPK 122

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           IDG  I + YE G+ V    RGDG +GEDV+  +R +  +P  L+    PE +EVRGEV+
Sbjct: 123 IDGLAIDLVYEDGRLVRGVTRGDGRTGEDVTFNVRTVEDVPHRLTGADVPEFLEVRGEVF 182

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
              + F A+N  ++  G+ P+ANPRNAA+G LR+ +P    TR L   VHG+G    +  
Sbjct: 183 FHLDGFAAINAGLVEAGKPPFANPRNAAAGSLRQKDPRVTATRPLRMLVHGVGARRGMEN 242

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q    +K+   G P +  V+  +T   +  Y       R  + ++IDG+V KVD+  L
Sbjct: 243 DTQSGAYEKLAAWGLPTSPRVKVVDTLDEVAEYVRFYGEHRHDVEHEIDGVVVKVDQVPL 302

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP A LEPV + G+ +  A
Sbjct: 303 QRRLGSTSRAPRWAIAYKYPPEEVTTSLLDIQVNVGRTGRVTPFAVLEPVKVAGSTVAMA 362

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +             + + +GD V+V++AG+VIP+V+  +V  R    + F  P
Sbjct: 363 TLHNASEV-----------VRKGVLIGDTVVVRKAGDVIPEVLGPVVESRTGAEREFVMP 411

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +               RC    +C AQ  ER+ H   R +F++E LG +  
Sbjct: 412 TVCPECGTPLAHQR-----ADDVDIRCPNSRSCPAQLRERVFHLAGRGSFDVEALGDKAA 466

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
               +    A  I    D+FTL               G    +   L  +++ R++  L 
Sbjct: 467 AALLQ----AGVIADEGDLFTLTEDDLVGVPLFTTKAGTVSANGRRLLANLHDRKDQPLW 522

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +  L IRHVG   AR+LA  + S +                   +     VG  IA+A
Sbjct: 523 RVLVGLSIRHVGPTAARALADRFGSMEAIEAAT----------AEDIASAEGVGPTIAEA 572

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +VE+     +   V    +         +++    +E   +V TG+L    R +A+E V 
Sbjct: 573 VVEWLAVDWHRDVVRKWREAGVRMADERDESTPRTLEGLTIVVTGSLSGFSRDEAKEAVL 632

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
             G   S+ +S+KT  ++VG+  GSK +KA+QLGV +++EE F+ LL+     +    ++
Sbjct: 633 SRGGKASSAVSKKTSFVVVGEAAGSKADKAEQLGVPVLDEEGFVALLEGGPDAVARPAEE 692


>gi|293571852|ref|ZP_06682868.1| DNA ligase, NAD-dependent [Enterococcus faecium E980]
 gi|291608106|gb|EFF37412.1| DNA ligase, NAD-dependent [Enterococcus faecium E980]
          Length = 679

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 235/720 (32%), Positives = 391/720 (54%), Gaps = 53/720 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S  
Sbjct: 5   EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 62

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+ +   +     + +  
Sbjct: 63  -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRV----VDYCC 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  L   +   IEVRGE
Sbjct: 118 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMN--IEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ +     +
Sbjct: 176 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + +Y  E    R  LPY+IDG+V KV+EF
Sbjct: 236 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 296 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVMDKRPKDSEEYQ 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V            A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 405 LPTHCPVCGSELVHLDEE------VALRCINPK-CPAQMKEGLNHFVSRNAMNIDGLGPR 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +  +     +   AD++ L   +  +      +    + S  N+  +I+  ++ S
Sbjct: 458 VLEQMYDKK----LVADVADLYKLTEEELLT------LDKIKEKSANNILTAIDNSKDNS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSRS----------DYESIIALDTIGDIIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++V ++ N      +  L +       +       + V S  + K +V TG L ++ R 
Sbjct: 558 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTRLTRE 617

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L + ++ 
Sbjct: 618 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMAEALAKSHSA 677


>gi|257884412|ref|ZP_05664065.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,501]
 gi|257898303|ref|ZP_05677956.1| NAD-dependent DNA ligase [Enterococcus faecium Com15]
 gi|257820250|gb|EEV47398.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,501]
 gi|257836215|gb|EEV61289.1| NAD-dependent DNA ligase [Enterococcus faecium Com15]
          Length = 678

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 235/720 (32%), Positives = 391/720 (54%), Gaps = 53/720 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S  
Sbjct: 4   EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 61

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+ +   +     + +  
Sbjct: 62  -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRV----VDYCC 116

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  L   +   IEVRGE
Sbjct: 117 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMN--IEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ +     +
Sbjct: 175 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + +Y  E    R  LPY+IDG+V KV+EF
Sbjct: 235 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 295 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 355 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V            A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 404 LPTHCPVCGSELVHLDEE------VALRCINPK-CPAQMKEGLNHFVSRNAMNIDGLGPR 456

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +  +     +   AD++ L   +  +      +    + S  N+  +I+  ++ S
Sbjct: 457 VLEQMYDKK----LVADVADLYKLTEEELLT------LDKIKEKSANNILTAIDNSKDNS 506

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 507 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSRS----------DYESIIALDTIGDIIA 556

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++V ++ N      +  L +       +       + V S  + K +V TG L ++ R 
Sbjct: 557 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTRLTRE 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L + ++ 
Sbjct: 617 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMAEALAKSHSA 676


>gi|228956728|ref|ZP_04118514.1| DNA ligase [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|229143090|ref|ZP_04271523.1| DNA ligase [Bacillus cereus BDRD-ST24]
 gi|296501121|ref|YP_003662821.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis BMB171]
 gi|228640363|gb|EEK96760.1| DNA ligase [Bacillus cereus BDRD-ST24]
 gi|228802916|gb|EEM49748.1| DNA ligase [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|296322173|gb|ADH05101.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis BMB171]
          Length = 669

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDSANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|161598439|ref|YP_120478.2| NAD-dependent DNA ligase LigA [Nocardia farcinica IFM 10152]
          Length = 710

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 228/721 (31%), Positives = 360/721 (49%), Gaps = 42/721 (5%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R     L +E+  H   YY    PII D E+DAL R    +    PDL     P+ P 
Sbjct: 25  EDRVRWQRLAEEVREHQFRYYVRDAPIISDGEFDALLRELQELEDRHPDL---RTPDSPT 81

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +GG        V H    LSL+ ++++++LR +  R+      +    + +  E KID
Sbjct: 82  QLVGGGFATDFTPVDHLERMLSLDNVFDVDELRAWAARVE----AETGPDLHYLCEVKID 137

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV----LSLNIPEIIEVRGEV 191
           G  + + YE+GK V AA RGDG +GEDV+   R I  +P          +PE++EVRGEV
Sbjct: 138 GVALNLVYERGKLVRAATRGDGRTGEDVTLNARTIEDVPGELSAGGEFPVPELLEVRGEV 197

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+   DF ALN  ++A G+ PYANPRN A+G LR+ +P     R L    HGLG+     
Sbjct: 198 YLRLADFEALNAAIVAEGKPPYANPRNTAAGSLRQKDPAVTARRRLRMICHGLGRIEGYT 257

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q+E  + +   G PV+   R+      ++         R  + ++IDG V KVDE S
Sbjct: 258 PASQFEAYRALSAWGLPVSEHTRRVRGIDAVIERVAYWGEHRHDIEHEIDGQVIKVDETS 317

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  +R+PRW I++K+  ++A+T+L  I++ +GRTG +TP A +EPV I G+ +  
Sbjct: 318 LQRRLGATSRAPRWAIAYKYPPEEATTKLRAIEVNVGRTGRVTPFAVMEPVVIAGSTVAM 377

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN   +K            + + +GD V +++AG+VIP+V+  +V+ R    + F  
Sbjct: 378 ATLHNASEVKR-----------KGVLIGDTVTIRKAGDVIPEVLGPVVDARTGAEREFVM 426

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + +  +      +  A  RC    +C AQ  ER+ H   R AF+IE LG + 
Sbjct: 427 PTHCPECGTELAPE-----KEGDADIRCPNQRSCPAQLRERVYHVAGRSAFDIEALGYEA 481

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                +S     +I    D+F L   +  +T+   N  G    +   L ++++  ++  L
Sbjct: 482 AIDLLQS----GAIGDEGDLFDLDEARLLTTSLFTNKNGSLSANGKRLLENLDAAKDRPL 537

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R +  L IRHVG   AR+LA  + S +   Q               L     VG  IA 
Sbjct: 538 WRVLVGLSIRHVGPTAARALAAEFGSMERIEQA----------SVDELAATDGVGPTIAA 587

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           A+ E++    +   V          +   ++++   +E   +V TG+LQ   R  A+E +
Sbjct: 588 AVAEWFTVDWHRAIVAKWRAAGVRMVDERDESIERTLEGLSIVVTGSLQGFSRDGAKEAI 647

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730
              G   +  +S+KT  ++VGD PG+K  KA++LGV I++EE F+ LL +    +   + 
Sbjct: 648 LARGGKAAGSVSKKTAFVVVGDAPGAKAAKAEELGVPILDEEGFVRLLAEGPAAVAAEEP 707

Query: 731 D 731
           +
Sbjct: 708 E 708


>gi|218230787|ref|YP_002365135.1| NAD-dependent DNA ligase LigA [Bacillus cereus B4264]
 gi|254781552|sp|B7H4U8|DNLJ_BACC4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218158744|gb|ACK58736.1| DNA ligase (NAD(+)) [Bacillus cereus B4264]
          Length = 669

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMKYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|86142854|ref|ZP_01061293.1| DNA ligase [Leeuwenhoekiella blandensis MED217]
 gi|85830886|gb|EAQ49344.1| DNA ligase [Leeuwenhoekiella blandensis MED217]
          Length = 663

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 219/705 (31%), Positives = 358/705 (50%), Gaps = 47/705 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A++++ +L QE+  ++  YY   KP + D  +D   +    +    P+     D N P  
Sbjct: 3   AQEKIEALRQELRQYNYEYYVLDKPQVDDYTFDQKLKELQEMEAKHPEF---YDANSPTL 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GGE+  +   V H     SL+  ++ EDL  +  RI +      D ++ +  E K DG
Sbjct: 60  RVGGEVTKNFATVKHEHRMYSLDNSYSQEDLEDWEKRIKKLV----DGAVEYVCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YE+G  V A  RGDG  G+DV+  ++ I ++P  L  + P   ++RGE+ +   
Sbjct: 116 ASISLTYEEGVLVRAVTRGDGVQGDDVTNNVKTIRSVPLKLKGDFPAKFDIRGEIVLPLA 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F A+N E +  G +PY+NPRN ASG L+  +  ++ +     +        +    Q+E
Sbjct: 176 GFAAMNAERVEAGDEPYSNPRNTASGSLKLQDSAEVAKRPLECLLYSIVGENLDIASQFE 235

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K R  GF V    ++  +      + N     R  LPY+ DG+V KV+ F  Q++LG
Sbjct: 236 SLEKARSWGFKVPEVAKKTASTAETFEFLNYWDEHRHDLPYETDGVVIKVNSFRQQEELG 295

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A++PRW +++KF  +QA T L  I  Q+GRTG +TPVA L PV + G ++  A+LHN 
Sbjct: 296 FTAKAPRWAMAYKFKTEQAETVLEKITYQVGRTGAITPVANLVPVQLAGTIVKRASLHNA 355

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           D+R GD V V++ GE+IPK+V +   +R PD+    + S CP 
Sbjct: 356 DQIEKL-----------DVREGDHVYVEKGGEIIPKIVGVDFEQRDPDSTATEYISECPE 404

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + +VR          A H C   + C  Q + R++HF+SR A +IEGLG + +     
Sbjct: 405 CGTTLVRQEGE------AQHYCPNDMGCPPQIIGRIQHFISRKAMDIEGLGGETVALLVN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD++TL++ Q      I  +    + S  NL   I   + I  ER +F 
Sbjct: 459 E----GLIKNYADLYTLKKEQ------ILPLERMAEKSADNLIKGIEASKQIPFERVLFG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR+VG  +AR LAK + +    A+              +L+ V  +G  IAQ++V F+
Sbjct: 509 LGIRYVGETVARKLAKQFKTIDALAEASE----------ETLVAVDEIGARIAQSVVSFF 558

Query: 617 QNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
               N   ++ L              +N + +++ +  V +G   K+ R + ++ +   G
Sbjct: 559 SEEANQDLIKRLKDYGLQLELDASVLENQTDKLQGQTFVISGVFSKVSRTELKKLIEDNG 618

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
              S  +S KT+ ++ G+N G SKL+KA++LGV I++E+ FL +L
Sbjct: 619 GKASGSISSKTNYLVAGENMGPSKLQKAEKLGVPIISEDDFLAML 663


>gi|317489959|ref|ZP_07948451.1| DNA ligase [Eggerthella sp. 1_3_56FAA]
 gi|316910957|gb|EFV32574.1| DNA ligase [Eggerthella sp. 1_3_56FAA]
          Length = 708

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 233/737 (31%), Positives = 371/737 (50%), Gaps = 53/737 (7%)

Query: 1   MKKRQLIPIEALSIEQA----RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCD 56
           M   Q   ++  ++ +A       + +L +EI +H   YY    P I D+ +D+L R   
Sbjct: 1   MADEQQTLLDEQALAEATSDPAARIDALRREIEHHSYLYYANDAPEISDAAFDSLMRELR 60

Query: 57  AIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR 116
            +  A P+L    DP+ P  ++GG +      V H+    SL+   ++++L  +I R+  
Sbjct: 61  ELEAAHPELI---DPSSPTQRVGGYVGEQFAPVRHARRMYSLDNAMDLDELDAWIERVTE 117

Query: 117 FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176
            + +     +    E KIDG+ I + YE G+ + AA RGDG +GEDV+A +R +  +P  
Sbjct: 118 AFGRM----VPVVCELKIDGSSIALTYEGGRLMRAATRGDGTTGEDVTANMRTVKDVPLR 173

Query: 177 LSL-------NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP 229
           L         +    +E+RGEVY+ K+ F ALN   +  G++ +ANPRNAA+G LR+ +P
Sbjct: 174 LREGALGGLRDADAPVELRGEVYMPKSSFDALNAAAVENGKQAFANPRNAAAGSLRQKDP 233

Query: 230 T-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM 288
           +    R L+ F++ +     + A+GQ+E+L  +R  GF VN  V    T   + ++    
Sbjct: 234 SITANRDLSTFIYAVADERALNAEGQWELLAWLREAGFHVNPDVELCQTREEVHAFCERA 293

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
            + R  LPY+IDG+V KV+ F+ Q+ +G  AR+PRW ++ KF  ++ +T L DI +Q+GR
Sbjct: 294 VARREDLPYEIDGVVVKVNSFAQQESMGYTARAPRWAVAFKFPPEEKTTLLRDITVQVGR 353

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG LTPVA L+PV + G+ +  ATLHNED ++            +D+RVGD V+V++AG+
Sbjct: 354 TGKLTPVAELDPVVVAGSTVARATLHNEDEVQR-----------KDVRVGDTVIVRKAGD 402

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           VIP+V+  ++  R  DA+ +  P  CP C S V+R+            RC   + C AQ 
Sbjct: 403 VIPEVLGPVLALRPADAEAWQMPRTCPSCGSPVIREEGE------VDFRCIS-IDCPAQA 455

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DIFTLQRRQQTSTTKIENI 527
           LERL H+ SR A +I+G+G++ +    +S   +        D   L         K    
Sbjct: 456 LERLLHWASRGAMDIDGMGEEIVSRLVESGRLSDVADYYTLDEVELSLLDMGRVNKDGEP 515

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
           +  G      L  +I++ R     R +F LGIRHVG  IA  LA  Y S +   +     
Sbjct: 516 IRLGSTVAKKLVAAIDESRTRPFARALFGLGIRHVGKTIAELLAAAYPSIEALMEASE-- 573

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVS 644
                     L  +  VG  IA++   F + P N   +E L               + + 
Sbjct: 574 --------EDLAAIDGVGPKIARSAYLFLRTPDNAAVIERLRSHGVALADKAADEGEQLP 625

Query: 645 SEIENKKLVFTGTL--QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
             +     V TG+L    + R +A   +   GA VS  +S+KT  ++ G+  GSK +KA 
Sbjct: 626 QTLAGLTFVLTGSLVESGMTRDEAGAALKARGAKVSGSVSKKTSFVVAGEAAGSKYDKAV 685

Query: 703 QLGVKIMNEEQFLFLLQ 719
            LGV +++E   L +L+
Sbjct: 686 ALGVPVLDEAALLRILE 702


>gi|229171138|ref|ZP_04298732.1| DNA ligase [Bacillus cereus MM3]
 gi|228612316|gb|EEK69544.1| DNA ligase [Bacillus cereus MM3]
          Length = 669

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 245/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A++ +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKQRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGMVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LE V + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEAVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|229101110|ref|ZP_04231876.1| DNA ligase [Bacillus cereus Rock3-28]
 gi|228682238|gb|EEL36349.1| DNA ligase [Bacillus cereus Rock3-28]
          Length = 669

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +EVRGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIPLRLNEEV--TLEVRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+      R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDTKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ISSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPNLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKSINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKSADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|126737638|ref|ZP_01753368.1| DNA ligase, NAD-dependent [Roseobacter sp. SK209-2-6]
 gi|126721031|gb|EBA17735.1| DNA ligase, NAD-dependent [Roseobacter sp. SK209-2-6]
          Length = 749

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 297/758 (39%), Positives = 428/758 (56%), Gaps = 60/758 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PI  LS  +A++EL+ L+  I   D  ++ +    I D  YD  KRR   +   FP L  
Sbjct: 4   PISDLSENEAQEELNELKLLIWSADRLHHTHDISEISDGAYDREKRRLKELVDTFPKLRP 63

Query: 68  SEDP--NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
             +   +     +G        K++H+IP LSL   +   D+  F   I  +  +  D S
Sbjct: 64  QAEKILDS----VGAPAASGFGKISHAIPMLSLGNAFEDGDVADFTKGIRNYLGQSADQS 119

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + FT EPKIDG  +++RYE G+ V+ A RGDG +GEDV+   R I  IP+VL+   PEI+
Sbjct: 120 LAFTAEPKIDGLSLSLRYENGRLVHGATRGDGSTGEDVTENARTIADIPQVLTGA-PEIL 178

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY+S  DF  LN      G K +ANPRNAA+G LR+L+      R L FF +  G
Sbjct: 179 EVRGEVYMSHADFATLNARQEEQGGKSFANPRNAAAGSLRQLDAEVTRARPLRFFAYSWG 238

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + SE  AK Q+E ++++  LGF  N       +   ++++Y  ++  R+TL YDIDG+VY
Sbjct: 239 ELSEPLAKTQFEAIERLSVLGFQTNELTALCTSVEEMIAHYRRIEEQRATLGYDIDGVVY 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++ +LQ +LG RA +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +G
Sbjct: 299 KVNDMALQARLGFRATTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G +++NATLHNEDYI+G D  G+ +RGG++IRVGD V + RAG+VIPKV D+ + +R  +
Sbjct: 359 GVVVSNATLHNEDYIQGRDNKGEEIRGGKEIRVGDWVQIYRAGDVIPKVADVDIRKRTGN 418

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
             PF+FP+ CP C S  VR+         A  RCTGGL C AQ +E+LKHFVSR AF+I+
Sbjct: 419 EIPFAFPTTCPECGSEAVREEG------DAVRRCTGGLICPAQAIEKLKHFVSRKAFDID 472

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG +QL+ FF+  D    IR P DI+ L++R   +  K++N  G+G  S  NL+ +I +
Sbjct: 473 GLGAKQLEMFFEDTD--LPIRTPVDIYRLEQRDGENLAKLKNRHGWGAQSAENLFAAITQ 530

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ-------------------------- 578
           +R I L R IF LGIRHVG   A+ LA ++ S+                           
Sbjct: 531 KRRIPLGRMIFGLGIRHVGEVAAKDLALHFGSWADLAAAVDLAREAALAHRAADLAEEKE 590

Query: 579 -----------------NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
                            +       + A   + W  LI +  +G  +  ++ +   N   
Sbjct: 591 RQAAAAEGRRARIKETRDLEVSRLEVSASARESWEDLIGIDGIGATVGLSLSDALANVEE 650

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
              ++AL+ E+            S +  K +VFTG L+K+ R +A+     LGA VS  +
Sbjct: 651 RSVIDALVHELEIE-APAAPAQESPVAGKTVVFTGKLEKMTRDEAKARAEALGAKVSGSV 709

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           S+KTDI++ G   GSK +KAQ+LG++I++EE +L  + 
Sbjct: 710 SKKTDILVAGPGAGSKEKKAQELGIEILDEEGWLARIA 747


>gi|160899029|ref|YP_001564611.1| NAD-dependent DNA ligase [Delftia acidovorans SPH-1]
 gi|254781308|sp|A9BZW4|DNLJ_DELAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160364613|gb|ABX36226.1| DNA ligase, NAD-dependent [Delftia acidovorans SPH-1]
          Length = 703

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 253/720 (35%), Positives = 380/720 (52%), Gaps = 56/720 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            ++   ++ +L  +++     YY    P + D EYD + ++  A+  A+P+L     P+ 
Sbjct: 22  PDKVLAKVQALRAQLNQWAHEYYVLDTPTVPDGEYDRVFQQLQALEGAYPELV---TPDS 78

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSL----EKIWNIEDLRKFITRIYRFWQKKDD-NSIFF 128
           P  ++ G +   L  V H++P LS+    +      +   F  RI +  +  +    + +
Sbjct: 79  PTQRVIGAVLDGLMPVRHAVPMLSIRTETDNEATGAE--AFDARIRKELELAEGAPPVEY 136

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI--PEIIE 186
             EPK DG  + +RYE G+ V A  RGDG  GEDV+  IR I  IP  L      P ++E
Sbjct: 137 VAEPKFDGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRKIPLSLPEGKGVPPVVE 196

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245
           VRGEVY+ + DF+ LN+   A G K +ANPRNAA+G +R+L+      R L+FF +GLG+
Sbjct: 197 VRGEVYMGRADFVKLNERQQAAGGKSFANPRNAAAGSVRQLDSGIAAQRPLSFFAYGLGE 256

Query: 246 TSE-----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
            +            Y MLQ +R  GFPV   V  A     +V+++  M + R+TLPY+ID
Sbjct: 257 ITPAAQGGPDFVTHYAMLQTLRDWGFPVAPQVCIAKGAAELVAFHQRMGAERATLPYEID 316

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+VYKV+  + Q+QLG  +R PRW ++HK+  ++  TR+  IDIQ+GRTG LTPVARL P
Sbjct: 317 GVVYKVNSLAQQRQLGFVSREPRWAVAHKYPAEEMPTRMEGIDIQVGRTGKLTPVARLAP 376

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GG ++TNATLHN   I+            + +R GD V+V+RAG+VIP+VV  +  +
Sbjct: 377 VAVGGVIVTNATLHNLFEIRK-----------KRVRTGDTVVVRRAGDVIPEVVGRVPGD 425

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R      F  P+ CPIC S V R          A HRCTGGL C AQ+ E + HF +R A
Sbjct: 426 RPAYVPNFRMPAACPICGSAVARPKGE------ANHRCTGGLFCPAQRKEAILHFAARRA 479

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +IEGLG + +D           +R   D++ L          + ++    + S  N+ D
Sbjct: 480 MDIEGLGDKLVDQLVD----GHVVRTLPDLYRL------GLVALASLDRMAEKSAQNVLD 529

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           ++ K +  +L RF+F LGIR VG   A+ LA+++                       L++
Sbjct: 530 ALEKSKKTTLSRFLFGLGIRQVGESTAKDLARHFGQLDAIMDA----------SVEQLLQ 579

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQ 659
           V  VG I+A++I  F+  P N   VE L         G   +  +  +    +V TGTL 
Sbjct: 580 VRDVGPIVAESIHTFFAQPHNREVVEQLRACGVHWEEGAAREQTAQPLAGMTVVLTGTLP 639

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + R +A+E +   GA VS  +S+KT  ++ G   GSKL KA++LGV +++E   L LL 
Sbjct: 640 TLGRDQAKEMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVTVLDEAGMLALLA 699


>gi|300781381|ref|ZP_07091235.1| NAD-dependent DNA ligase LigA [Corynebacterium genitalium ATCC
           33030]
 gi|300533088|gb|EFK54149.1| NAD-dependent DNA ligase LigA [Corynebacterium genitalium ATCC
           33030]
          Length = 674

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 219/719 (30%), Positives = 359/719 (49%), Gaps = 51/719 (7%)

Query: 12  LSIEQARK----ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           ++  Q  +    + + L +E+  H D YY    P+I D+E+D + RR   +    P+LA 
Sbjct: 1   MTEAQVSEDLLRQWNELAKEVRRHRDLYYNGD-PVITDAEFDEMFRRLQQLEEDHPELAV 59

Query: 68  SEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              P+ P  ++G    + +   V H  P +SL+ +++ E+L  ++T+             
Sbjct: 60  ---PDSPTKEVGAAPTSTAFEDVEHLEPMMSLDNVFSAEELSDWLTKT----------PG 106

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +  E KIDG  I + YE G+   AA RGDG  GE+++A  R I  IP  L+ + P ++E
Sbjct: 107 PYLTELKIDGVSIDLVYENGQLTRAATRGDGRVGENITANARVIDDIPHELTGDFPALLE 166

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245
           VRGEV+I   DF  LN+     G KP+ANPRN A+G LR+ +P     R L    HG+G 
Sbjct: 167 VRGEVFIRPEDFPELNELRQKEGGKPFANPRNTAAGGLRQKDPEKVRNRKLRMICHGIGA 226

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
              +    Q++  +K+   G PV+   ++A T   +          R    +++DGLV K
Sbjct: 227 REGVEFSSQHDAYEKLAAWGLPVSEYTKRAETAEEVQKTVEYWADHRHDAIHEMDGLVIK 286

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ + Q+QLG  +R+PRW I++K+  ++ +T+L DI + +GRTG  TP A LEPV + G
Sbjct: 287 VDDLAAQRQLGFTSRAPRWAIAYKYPPEEVTTKLKDIAVSVGRTGRATPFAVLEPVFVSG 346

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + ++ ATLHN+  +K            + + +GD V+V++AGE+IP+V+  + + R    
Sbjct: 347 STVSMATLHNQHEVKR-----------KGVLIGDTVVVRKAGEIIPEVLGPVADLRDGTE 395

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F FP  CP+C +++         +  A  RC    +C AQ  +RL++  SR AF+IE 
Sbjct: 396 KEFVFPENCPVCGTKLA-----PAKEGDADWRCPNTRSCPAQLGQRLEYLASRGAFDIEA 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++           +  +    D+FTL       ++      G  + S   L  ++ + 
Sbjct: 451 LGEKGAQDLI----ASGVLIDEGDLFTLTESDLEKSSVYTTKAGTVNASGKKLLANLEQA 506

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   L R + +L IRHVG   AR+LA  Y S                     L     VG
Sbjct: 507 KEKELWRVLVALSIRHVGPTAARALASRYGSMGKLLDA----------SVDDLADTDGVG 556

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            IIA++  E+++   +   V                ++   +E   +V TG+L+   R  
Sbjct: 557 GIIAESFKEWFEVEWHRDIVRKWGAAGVNMEDE-ASDLEQTLEGLTVVVTGSLENFSRDG 615

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           A+E +   G   +  +S+KTD ++VG+N GSK  KA+ LG+ I++E+QF  LL+  +  
Sbjct: 616 AKEAILSRGGKAAGSVSKKTDYVVVGENAGSKETKARDLGITILDEDQFRTLLETGDAE 674


>gi|229095009|ref|ZP_04226005.1| DNA ligase [Bacillus cereus Rock3-29]
 gi|229113962|ref|ZP_04243388.1| DNA ligase [Bacillus cereus Rock1-3]
 gi|228669421|gb|EEL24837.1| DNA ligase [Bacillus cereus Rock1-3]
 gi|228688339|gb|EEL42221.1| DNA ligase [Bacillus cereus Rock3-29]
          Length = 669

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+      R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDTKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ISSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPNLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKSINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKSADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|124267002|ref|YP_001021006.1| DNA ligase (NAD+) [Methylibium petroleiphilum PM1]
 gi|166215820|sp|A2SGT2|DNLJ_METPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|124259777|gb|ABM94771.1| DNA ligase (NAD+) [Methylibium petroleiphilum PM1]
          Length = 677

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 240/715 (33%), Positives = 366/715 (51%), Gaps = 53/715 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E      + L +++ YH   YY    P I D+EYD L     A+  A P L     P+ P
Sbjct: 6   EDPAARAAQLREQLEYHAHRYYVLDAPEIPDAEYDRLFTELQALEAAHPGL---RTPDSP 62

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED-----LRKFITRIYRFWQKKDD-NSIFF 128
             ++ G +   L  V H++P LS   I    D       KF   +    +   D   + +
Sbjct: 63  TQRVIGAVLEGLSAVRHAVPMLS---IKTETDTTPTGALKFDAAVRNALKLPPDAPPLRY 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E K DG  I +RY+ G+ V AA RGDG +GEDV+  +  I ++P+ L      ++EVR
Sbjct: 120 AAELKFDGLAINLRYQAGRLVQAATRGDGETGEDVTHTVGTIESVPKQLRGITAPVLEVR 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS 247
           GEV++ ++DF ALN+     G K + NPRNAA+GI+R+L+ +   +   +FF +GLG   
Sbjct: 180 GEVFMRRDDFEALNERQREAGLKTFVNPRNAAAGIVRQLDASIARQRPLSFFAYGLGDVQ 239

Query: 248 -EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                     +L  +  LG PV+           + +++  + + R  LP+DIDG+VYKV
Sbjct: 240 GWDVPPTHAGLLDALAALGLPVDAHRTVVEGGEALAAFHAGIAAERDALPFDIDGVVYKV 299

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           DE +LQ+QLG ++R PRW ++HK+  ++ ST+L  I+IQ+GRTG LTPVA+L+PV +GG 
Sbjct: 300 DERALQQQLGFKSREPRWAVAHKYPAQEQSTQLAGIEIQVGRTGKLTPVAKLQPVFVGGT 359

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN   ++            + IR+GD V+V+RAG+VIP+VV  +   R     
Sbjct: 360 TVSNATLHNRFELRR-----------KGIRIGDTVIVRRAGDVIPEVVGRVPVPRTAYIP 408

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  P  CP+C S+ +R+           +RC+GGL C+AQ+ + L HF  R   +IEGL
Sbjct: 409 NFRMPRACPVCGSQALRERG------SVDYRCSGGLFCAAQRKQALLHFAGRRMMDIEGL 462

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + ++           IR   +++ L         K+  +   GD S  NL  ++   +
Sbjct: 463 GDKLVEQLVD----GGIIRTLPELYRL------GVAKLVALERMGDKSAANLVAALEASK 512

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RF+FSLGIRH+G   A+ LA+++ +                     L+ V  VG 
Sbjct: 513 ATTLARFLFSLGIRHIGEATAKDLARHFGALDRVMDA----------SVEQLLEVNDVGP 562

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRH 664
           ++AQ++  F+  P N   VE L                    +  K  V TGTL  + R 
Sbjct: 563 VVAQSLRTFFDQPHNREVVEQLRAAGVHWDEHSGEADLTPRPLAGKTFVLTGTLPSLGRE 622

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            A+E +   G  V+  +S+KTD ++ G+  GSKLEKAQ LGV +++E     LL 
Sbjct: 623 AAKELIEAAGGKVAGSVSKKTDYVVAGEEAGSKLEKAQALGVAVIDEAALRALLD 677


>gi|229107967|ref|ZP_04237594.1| DNA ligase [Bacillus cereus Rock1-15]
 gi|228675470|gb|EEL30687.1| DNA ligase [Bacillus cereus Rock1-15]
          Length = 669

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+LNP     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLNPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|81373659|sp|Q5YRS7|DNLJ2_NOCFA RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|54017744|dbj|BAD59114.1| putative DNA ligase [Nocardia farcinica IFM 10152]
          Length = 683

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 227/717 (31%), Positives = 358/717 (49%), Gaps = 42/717 (5%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
               L +E+  H   YY    PII D E+DAL R    +    PDL     P+ P   +G
Sbjct: 2   RWQRLAEEVREHQFRYYVRDAPIISDGEFDALLRELQELEDRHPDL---RTPDSPTQLVG 58

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G        V H    LSL+ ++++++LR +  R+      +    + +  E KIDG  +
Sbjct: 59  GGFATDFTPVDHLERMLSLDNVFDVDELRAWAARVE----AETGPDLHYLCEVKIDGVAL 114

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV----LSLNIPEIIEVRGEVYISK 195
            + YE+GK V AA RGDG +GEDV+   R I  +P          +PE++EVRGEVY+  
Sbjct: 115 NLVYERGKLVRAATRGDGRTGEDVTLNARTIEDVPGELSAGGEFPVPELLEVRGEVYLRL 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN  ++A G+ PYANPRN A+G LR+ +P     R L    HGLG+        Q
Sbjct: 175 ADFEALNAAIVAEGKPPYANPRNTAAGSLRQKDPAVTARRRLRMICHGLGRIEGYTPASQ 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E  + +   G PV+   R+      ++         R  + ++IDG V KVDE SLQ++
Sbjct: 235 FEAYRALSAWGLPVSEHTRRVRGIDAVIERVAYWGEHRHDIEHEIDGQVIKVDETSLQRR 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW I++K+  ++A+T+L  I++ +GRTG +TP A +EPV I G+ +  ATLH
Sbjct: 295 LGATSRAPRWAIAYKYPPEEATTKLRAIEVNVGRTGRVTPFAVMEPVVIAGSTVAMATLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   +K            + + +GD V +++AG+VIP+V+  +V+ R    + F  P+ C
Sbjct: 355 NASEVKR-----------KGVLIGDTVTIRKAGDVIPEVLGPVVDARTGAEREFVMPTHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +  +      +  A  RC    +C AQ  ER+ H   R AF+IE LG +     
Sbjct: 404 PECGTELAPE-----KEGDADIRCPNQRSCPAQLRERVYHVAGRSAFDIEALGYEAAIDL 458

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +S     +I    D+F L   +  +T+   N  G    +   L ++++  ++  L R +
Sbjct: 459 LQS----GAIGDEGDLFDLDEARLLTTSLFTNKNGSLSANGKRLLENLDAAKDRPLWRVL 514

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             L IRHVG   AR+LA  + S +   Q               L     VG  IA A+ E
Sbjct: 515 VGLSIRHVGPTAARALAAEFGSMERIEQA----------SVDELAATDGVGPTIAAAVAE 564

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           ++    +   V          +   ++++   +E   +V TG+LQ   R  A+E +   G
Sbjct: 565 WFTVDWHRAIVAKWRAAGVRMVDERDESIERTLEGLSIVVTGSLQGFSRDGAKEAILARG 624

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
              +  +S+KT  ++VGD PG+K  KA++LGV I++EE F+ LL +    +   + +
Sbjct: 625 GKAAGSVSKKTAFVVVGDAPGAKAAKAEELGVPILDEEGFVRLLAEGPAAVAAEEPE 681


>gi|257895732|ref|ZP_05675385.1| NAD-dependent DNA ligase [Enterococcus faecium Com12]
 gi|257832297|gb|EEV58718.1| NAD-dependent DNA ligase [Enterococcus faecium Com12]
          Length = 678

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 235/720 (32%), Positives = 391/720 (54%), Gaps = 53/720 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S  
Sbjct: 4   EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 61

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+ +   +     + +  
Sbjct: 62  -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRV----VDYCC 116

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  L   +   IEVRGE
Sbjct: 117 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMN--IEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ +     +
Sbjct: 175 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGSM 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + +Y  E    R  LPY+IDG+V KV+EF
Sbjct: 235 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 295 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 355 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V            A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 404 LPTHCPVCGSELVHLDEE------VALRCINPK-CPAQMKEGLNHFVSRNAMNIDGLGPR 456

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +  +     +   AD++ L   +  +      +    + S  N+  +I+  ++ S
Sbjct: 457 VLEQMYDKK----LVADVADLYKLTEEELLT------LDKIKEKSANNILTAIDNSKDNS 506

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 507 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSRS----------DYESIIALDTIGDIIA 556

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++V ++ N      +  L +       +       + V S  + K +V TG L ++ R 
Sbjct: 557 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTRLTRE 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L + ++ 
Sbjct: 617 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMAEALAKSHSA 676


>gi|228919228|ref|ZP_04082598.1| DNA ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228840335|gb|EEM85606.1| DNA ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 669

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 385/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ISSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R    + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGKEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|229154059|ref|ZP_04282184.1| DNA ligase [Bacillus cereus ATCC 4342]
 gi|228629339|gb|EEK86041.1| DNA ligase [Bacillus cereus ATCC 4342]
          Length = 669

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSEALDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQQSLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKEINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKNIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|193212122|ref|YP_001998075.1| DNA ligase, NAD-dependent [Chlorobaculum parvum NCIB 8327]
 gi|254781284|sp|B3QLI5|DNLJ_CHLP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193085599|gb|ACF10875.1| DNA ligase, NAD-dependent [Chlorobaculum parvum NCIB 8327]
          Length = 674

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 226/716 (31%), Positives = 368/716 (51%), Gaps = 51/716 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   +A++E+  L  EI  H+  YY  +KP I D E+D L  R  A+   FP+L     P
Sbjct: 1   MDKAKAQQEIGKLRAEIERHNRLYYLEAKPEISDFEFDKLLERLIALETEFPELV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +      V H  P LSL   ++I ++  F TR+ +    +   +  +  E
Sbjct: 58  DSPSQRVGGGITKEFPTVIHREPMLSLSNTYSIGEVSDFCTRVEKLVAAEGGGTPEYVAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV--------LSLNIPE 183
            K DG  I++ Y  G  V  + RGDG  G++++A ++ IP+IP              +  
Sbjct: 118 LKYDGVAISLFYRDGLLVRGSTRGDGRQGDEITANLKTIPSIPLRLQSAGGSLFDAAVNG 177

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243
            +EVRGEVY+ K+DF  LN+E      + +ANPRNA +G L+  +  ++ R    FV   
Sbjct: 178 EVEVRGEVYMRKDDFERLNEERPE--EERFANPRNATAGTLKLQDSAEVARRRMSFVAYY 235

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
            K  +  A      L++++C+GF      R       I ++  E    R TLPY+ DG+V
Sbjct: 236 LKGHDGEAPTHLRRLEQLKCMGFMTGAAARLCKGMDEIANFIGEWSEKRWTLPYETDGVV 295

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K++E  L  +LG  A+SPRW I++K+  +QA T L  +  Q+GR G +TPVA L+P  +
Sbjct: 296 LKLNEVGLWDRLGATAKSPRWAIAYKYPAQQAKTVLQGVVFQVGRLGTITPVAELKPTKL 355

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ ++ +TLHN D I+ L            +R+GD V+++++GEVIPKVV ++++ER  
Sbjct: 356 AGSTVSRSTLHNFDEIERL-----------GVRIGDHVMIEKSGEVIPKVVSVVLDERPA 404

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +      PS CP+C +++ R           +  C     C AQ+  R+ HF SR+A +I
Sbjct: 405 ETAEIEAPSECPVCGTKLERHEGE------VSWYCPNEEGCPAQKRGRILHFASRNALDI 458

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           + LG+  +    +       +    D+++L + Q  S      +      S  N+ D++ 
Sbjct: 459 QNLGESLVSQLVER----GFVSDAGDLYSLTQEQLAS------LDRMAAKSAQNVLDALE 508

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +  S  R +F+LGIRHVGA  AR LA    S     +               L  VP 
Sbjct: 509 KSKKQSYARLLFALGIRHVGAATARELAHACPSIDRLREMGE----------EELAAVPD 558

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQ 662
           +G +IA +I +F+  P     +E L     P     EK  V++  E + ++FTG L++  
Sbjct: 559 IGPVIAASIRDFFAKPWVAAMLEKLAAAGLPMQAGEEKALVNTNFEGQSVIFTGGLERHV 618

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A+E V + G  + + +S+KT +++ G   GSKLEKA +LGV++++E++F  +L
Sbjct: 619 RQQAEEMVRERGGKIVSSVSKKTTLVVAGKEAGSKLEKAMKLGVRVIDEDEFERML 674


>gi|75906538|ref|YP_320834.1| NAD-dependent DNA ligase LigA [Anabaena variabilis ATCC 29413]
 gi|123745307|sp|Q3MGE7|DNLJ_ANAVT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|75700263|gb|ABA19939.1| NAD-dependent DNA ligase [Anabaena variabilis ATCC 29413]
          Length = 676

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 229/712 (32%), Positives = 369/712 (51%), Gaps = 55/712 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L + +      YY    P++ D+ YD L R    +    P+L     P+ P  +I
Sbjct: 9   KRVEELRRLLQQASYAYYVLDAPVMEDAVYDQLYRELQQLEIQHPELV---TPDSPTQRI 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G         V H+IP  SLE  +N+E+L+ +  R  R   +       +  E KIDG+ 
Sbjct: 66  GERPATQFLSVRHNIPLYSLENAFNVEELQAWDQRWRR---QVAPTEAEYVAELKIDGSA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGEVYISK 195
           I + YE G  V  A RGDG +GED++  +R I +IP  LS   +     +EVRGE ++  
Sbjct: 123 IALTYENGILVRGATRGDGVTGEDITQNVRTIRSIPLRLSFDGIENIGKVEVRGEAFLPL 182

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL---GKTSEIFA 251
             F  +N+E    G + +ANPRNAA+G LR+L+      R L+FF + L   G      A
Sbjct: 183 EVFKQINEERQKAGEQLFANPRNAAAGTLRQLDSKIVARRRLDFFAYTLHISGMDDASIA 242

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q+E L+ ++ +GF VN+  +   +   +  YY    + R  LPY  DG+V K++ F L
Sbjct: 243 NTQWEALELLQKMGFRVNSQHQLCQSLAEVADYYRYWDTERLNLPYMTDGVVLKLNSFKL 302

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG   R PRW ++ K+  ++A TR+ +I + +GRTG LTP+A++ PV + G  ++ A
Sbjct: 303 QEQLGFTQRFPRWAVALKYPAEEAPTRVENIAVNVGRTGALTPLAQMRPVQLAGTTVSRA 362

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L           DIR+GD V+V++AGE+IP+VV ++   R  D QPF  P
Sbjct: 363 TLHNSDRIAQL-----------DIRIGDTVIVRKAGEIIPEVVRVLKELRPVDTQPFIMP 411

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C   VVR+         A  RC    +C+A     ++H+VSRDA +I+G+G++ +
Sbjct: 412 THCPVCGQPVVRETGE------AVTRCVNA-SCAAILKGSIEHWVSRDALDIKGVGEKLV 464

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                 E     +   AD+++L   Q         +   G+ S   L ++I + +N    
Sbjct: 465 HQLVDKE----LVHSVADLYSLTNEQLF------VLERMGEKSAQKLIEAIAQSKNQPWS 514

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LGIRHVG+  A+ L++ Y +    +    +           +  +  +G  IAQ+
Sbjct: 515 RVLYGLGIRHVGSVNAQLLSEKYRAVAELSSAKQS----------DIAGIYGIGAEIAQS 564

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           + ++++   N   +E L           E     N + ++  K  V TGTL  ++R +A+
Sbjct: 565 VYQWFRISANQRLIERLQAAGLQFANTEEISAVDNANLKLVGKTFVITGTLPTLKRDEAK 624

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             + + G  ++  +S+KTD ++VG++ GSKLEKAQ LG+K ++E + L +L 
Sbjct: 625 ALIQKAGGKITESVSKKTDYLVVGEDAGSKLEKAQTLGIKQLSEAELLKILA 676


>gi|295107089|emb|CBL04632.1| DNA ligase, NAD-dependent [Gordonibacter pamelaeae 7-10-1-b]
          Length = 731

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 234/716 (32%), Positives = 361/716 (50%), Gaps = 49/716 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
              + +L +EI +H   YY    P I D  +D+L R    +  A P+L    DP+ P  +
Sbjct: 45  AARIEALRREIEHHTYLYYAQDAPEISDGAFDSLMRELRELEAAHPELV---DPSSPTQR 101

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +      V H+    SL+   ++E+L  +I R+   + +     +    E KIDG+
Sbjct: 102 VGGYVGEQFAPVRHARRMYSLDNAMDLEELDAWIERVTEAFGRM----VPVVCELKIDGS 157

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-------IIEVRGE 190
            I + YE G+ V AA RGDG +GEDV+A +R +  +P  L              +E+RGE
Sbjct: 158 SIALTYEDGRLVRAATRGDGTTGEDVTANMRTVKDVPLRLREAALGGLRDAAAPVELRGE 217

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+ K+ F ALN   +A G++ +ANPRNAA+G LR+ +P     R L+ F++ +     +
Sbjct: 218 VYMPKSSFDALNAAAVANGKQAFANPRNAAAGSLRQKDPAITANRDLSTFIYAVADERAL 277

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +GQ+E+L  +R  GF VN  V    T   + ++       R  LPY+IDG+V KV+ F
Sbjct: 278 AVEGQWELLAWLREAGFHVNPDVELCETREAVHAFCERAIERREALPYEIDGVVVKVNAF 337

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + Q+ +G  AR+PRW ++ KF  ++ +T L DI +Q+GRTG LTPVA +EPV + G+ + 
Sbjct: 338 AQQESMGYTARAPRWAVAFKFPPEEKTTLLHDITVQVGRTGKLTPVAEMEPVVVAGSTVA 397

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNED ++            +D+RVGD V+V++AG+VIP+V+  ++  R  DA  + 
Sbjct: 398 RATLHNEDEVQR-----------KDVRVGDTVIVRKAGDVIPEVLGPVLALRPADAAVWR 446

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S V+R+            RC   + C AQ LERL H+ SR A +I+G+G++
Sbjct: 447 MPATCPSCGSPVIREEGE------VDFRCIS-IDCPAQALERLLHWASRGAMDIDGMGEE 499

Query: 490 QLDFFFKSEDPAFSIRIPA-DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
            +    +S            D   L         K    +  G      L  +I+  R  
Sbjct: 500 IVSRLVESGRLTDVADYYTLDEVELALLDMGRVNKDGEPIRLGSTVAKKLVAAIDGSRAR 559

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              R +F LGIRHVG  IA  LA  Y S +   +               L  +  VG  I
Sbjct: 560 PFSRALFGLGIRHVGKTIAELLAAAYPSIEALMEASE----------EDLAALDGVGPKI 609

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTL--QKIQR 663
           A+++  F + P N   +E L K            ++ +   +E    V TG+L    + R
Sbjct: 610 ARSVYLFLRTPDNAAVIERLRKRGVAMADEAADPDEQLPQTLEGLTFVLTGSLVESGMTR 669

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A   +   GA VS  +S+KT  ++ G+  GSK +KA  LGV +++E   L +L+
Sbjct: 670 DEAGAALKARGAKVSGSVSKKTSYVVAGEAAGSKYDKAVTLGVPVLDEAALLRILE 725


>gi|146296740|ref|YP_001180511.1| DNA ligase, NAD-dependent [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|166215569|sp|A4XK85|DNLJ_CALS8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145410316|gb|ABP67320.1| DNA ligase, NAD-dependent [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 673

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 238/702 (33%), Positives = 380/702 (54%), Gaps = 47/702 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  
Sbjct: 5   IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYIF---PDSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     +V H +P LSL  +++  +L  F  R+       D N   + +E KIDG
Sbjct: 62  RVGGKVKEGFKEVVHRVPLLSLSNVFSEGELYDFDRRLRELLGTDDFN---YVVEYKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE G FV  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K+
Sbjct: 119 LSVALEYENGLFVRGATRGDGNVGEDVTENLKTIRSIPLKLKDDIN--IVVRGEVFMPKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
           +F+ LN E        +ANPRNAA+G LR+L+P    +          +  E   K   E
Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPRITAQRKLDIFVFNVQWCEKELKTHDE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ ++ LGF V+      +          +++  R  LP++IDG V K+++ +L+   G
Sbjct: 237 ALRYLKYLGFKVSPDYVVCSNIKEAYEAIKKVEEKRGLLPFEIDGAVVKLNQLALRDVAG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW +++KF  ++  T+L+DI++ +GRTGILTP A LEPV I G++++ ATLHN 
Sbjct: 297 STAKSPRWAVAYKFPPEKKETKLIDIEVNVGRTGILTPTAVLEPVRISGSVVSRATLHNM 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R  + + F  P  CP+
Sbjct: 357 DYIR-----------QKDIRIGDTVVVQKAAEIIPEVVEVVFSKRTGNERIFEMPKKCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + V++  +        A+RCTG   C A+    + HFVSRDA +I G+G+  +   F+
Sbjct: 406 CGADVIKFEDE------VAYRCTGV-ECPAKSYRLILHFVSRDAMDIAGMGEMIVKNLFE 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+ PADI+ L+     +      +  FG  S  NL  +I   +   L+R IF+
Sbjct: 459 R----GLIKTPADIYDLKFDDLVN------LERFGVKSTNNLLKAIEASKKRPLDRLIFA 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G + A++LA++  S  +                  L+++P  G+ +A+++V F+
Sbjct: 509 LGIRHIGQKAAKTLAEHISSIDDLFTITE----------EELLKLPDFGEKMAKSVVTFF 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +  +    +E L K    ++   +      ++    V TG L K  R +A+E +  LGA 
Sbjct: 559 RQDQTKHLIERLKKAGVNTVAEKKAKSD-ILKGYTFVLTGALSKYSRSQAKEILESLGAR 617

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           VS  +S+KT  +IVG++PGSKL KAQ+L VKI+ E+ F  L+
Sbjct: 618 VSESVSKKTTAVIVGEDPGSKLTKAQELNVKILYEQDFERLI 659


>gi|227551668|ref|ZP_03981717.1| DNA ligase (NAD(+)) [Enterococcus faecium TX1330]
 gi|293377659|ref|ZP_06623848.1| DNA ligase (NAD(+)) [Enterococcus faecium PC4.1]
 gi|227179231|gb|EEI60203.1| DNA ligase (NAD(+)) [Enterococcus faecium TX1330]
 gi|292643659|gb|EFF61780.1| DNA ligase (NAD(+)) [Enterococcus faecium PC4.1]
          Length = 679

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 235/720 (32%), Positives = 391/720 (54%), Gaps = 53/720 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S  
Sbjct: 5   EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 62

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG++     KVTH IP  SL  +++ E+L  F  R+ +   +     + +  
Sbjct: 63  -DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRV----VDYCC 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  L   +   IEVRGE
Sbjct: 118 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMN--IEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ +     +
Sbjct: 176 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGSM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + +Y  E    R  LPY+IDG+V KV+EF
Sbjct: 236 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 296 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V            A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 405 LPTHCPVCGSELVHLDEE------VALRCINPK-CPAQMKEGLNHFVSRNAMNIDGLGPR 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +  +     +   AD++ L   +  +      +    + S  N+  +I+  ++ S
Sbjct: 458 VLEQMYDKK----LVADVADLYKLTEEELLT------LDKIKEKSANNILTAIDNSKDNS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSRS----------DYESIIALDTIGDIIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++V ++ N      +  L +       +       + V S  + K +V TG L ++ R 
Sbjct: 558 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTRLTRE 617

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L + ++ 
Sbjct: 618 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMAEALAKSHSA 677


>gi|157826142|ref|YP_001493862.1| NAD-dependent DNA ligase LigA [Rickettsia akari str. Hartford]
 gi|166216231|sp|A8GPM9|DNLJ_RICAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157800100|gb|ABV75354.1| DNA ligase [Rickettsia akari str. Hartford]
          Length = 689

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 268/712 (37%), Positives = 411/712 (57%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S  +A+K L  L  +I+ ++  YY    P++ D+EYD L      +   FP L   
Sbjct: 4   IDFISEAEAKKLLEELSCKIAAYNHAYYIEDNPLVSDAEYDQLVNINLKLEQQFPHLVLE 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  ++G ++     KVTH +P LSL   ++ +D+R F+ RI  F +  +   I  
Sbjct: 64  ---NSPSKEVGAKIANKFVKVTHQVPMLSLSNAFDEQDVRDFVDRIKNFLRLDEFAPI-- 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G  +  A RGDG+ GED++A I+ I   P     N PE +EVR
Sbjct: 119 FCEPKIDGLSFSAIYKNGLLITGATRGDGYVGEDITANIKTIKNFPH-KIDNAPECLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN+E    GR  +ANPRNAA+G LR+L+ +    R L +FV+  G T 
Sbjct: 178 GEIYIEKQDFLNLNEEQEEQGRDQFANPRNAAAGSLRQLDASITAKRPLKYFVYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++  GF VN   +   +   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASSQDQLLTKLKKFGFSVNEISKLTKSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F LQ ++G  ARSPR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  
Sbjct: 298 DFELQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+++ D V ++RAG+VIPK+    + +R  D   
Sbjct: 358 VSRATLHNFQEI-----------VRKDVQIKDYVFLQRAGDVIPKITGADIEKRPNDTIA 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FCP C S++               RC  GL C AQ  ER++HFVS++A +I GLG
Sbjct: 407 FEAPLFCPSCNSKLYY------VPEDIIIRCDNGLNCPAQHYERIRHFVSKNAMDIAGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q++F          I  P DIF L++  + S  K+EN+ G+G  SV  L  +I K +N
Sbjct: 461 RKQVEFLIAK----GLISNPLDIFFLKKNNEASLIKLENMDGWGQKSVEKLLKNIEKSKN 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +SL RFI++LGIRH+G + A+ LA+ + SY NF  ++  +  +++D +  L  +  +GD 
Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLSKNDSDIYQKLNNLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I   I+ F     NI  ++ L + ++    +  +  SS +  K +VFTG+L  I R + +
Sbjct: 577 ILIDIIAFLDVKENIQLIKKLGEILNIEDYKETRAQSS-LTGKIVVFTGSLPTISRAEVK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
               +LGA V+A +S  TD+++ G + GSKL+KA++L +KI++EE++L L++
Sbjct: 636 ATAEKLGAKVAASVSSNTDLVVAGLDAGSKLQKAKELNIKIIDEEEWLTLIK 687


>gi|228937587|ref|ZP_04100225.1| DNA ligase [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228970474|ref|ZP_04131125.1| DNA ligase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228977043|ref|ZP_04137446.1| DNA ligase [Bacillus thuringiensis Bt407]
 gi|228782660|gb|EEM30835.1| DNA ligase [Bacillus thuringiensis Bt407]
 gi|228789206|gb|EEM37134.1| DNA ligase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228822068|gb|EEM68058.1| DNA ligase [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|326938080|gb|AEA13976.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 669

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGTILDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|42779416|ref|NP_976663.1| NAD-dependent DNA ligase LigA [Bacillus cereus ATCC 10987]
 gi|81411242|sp|Q73EM3|DNLJ_BACC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|42735332|gb|AAS39271.1| DNA ligase, NAD-dependent [Bacillus cereus ATCC 10987]
          Length = 669

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 389/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDVNVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+    A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFE----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVKAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|296330120|ref|ZP_06872602.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305673365|ref|YP_003865037.1| NAD-dependent DNA ligase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296152709|gb|EFG93576.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305411609|gb|ADM36728.1| NAD-dependent DNA ligase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 668

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 242/715 (33%), Positives = 393/715 (54%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A++    L + I+ +   YY   +P + D+EYD L +   AI    PDL     P
Sbjct: 1   MDKETAKQRADELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDL---RTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  +  KVTH  P LSL   +N +D    +    R  ++   + + + +E
Sbjct: 58  DSPTQRVGGAVLEAFQKVTHGTPMLSLGNAFNDDD----LRDFDRRVRQAVGDDVAYNVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +       IEVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKM--KRDLSIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F  LN+E I    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+ 
Sbjct: 172 YMPKRSFETLNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q + L  +  +GF  N   ++  +   +++  +E ++ R+ LPY+IDG+V KVD   
Sbjct: 232 VETQSQGLDFLDEIGFKTNQERKKCGSIEEVIALIDEFQAKRADLPYEIDGIVIKVDSLD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ 
Sbjct: 292 QQEELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED IK            +DIR+ D+V+VK+AG++IP+VV+++V +R  + + FS 
Sbjct: 352 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLVEQRTGEEKEFSM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTECPECGSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       +R  AD++ L + Q         +   G+ S  NL  SI K +  SL
Sbjct: 454 ITQLFEEN----LVRNVADLYKLTKEQVI------QLERMGEKSTENLISSIQKSKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA ++ S +N  +               L+ +  +G+ +A 
Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASK----------EELLAIDEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSP-----SIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A++ ++     +  +  L +               +   S    K +V TG L+++ R+ 
Sbjct: 554 AVITYFHKEEMLDLLNELQELGVNTHYKGPKKVKAEESDSYFAGKTIVLTGKLEELSRND 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+ TD++I G+  GSKL KAQ+L +++ NEEQ +  L++
Sbjct: 614 AKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEEQLMGELKK 668


>gi|183981708|ref|YP_001849999.1| NAD-dependent DNA ligase LigA [Mycobacterium marinum M]
 gi|254781377|sp|B2HIF0|DNLJ_MYCMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|183175034|gb|ACC40144.1| DNA ligase [NAD dependent] LigA [Mycobacterium marinum M]
          Length = 687

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 220/715 (30%), Positives = 350/715 (48%), Gaps = 44/715 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E  R+    L +++  H   YY    P+I D+E+D L RR +A+   +P+L     P
Sbjct: 1   MTPEVLRQ-WQELAEQVREHQFRYYVRDAPVITDAEFDELLRRLEALEEQYPEL---RTP 56

Query: 72  NGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P   +GG         V H    LSL+  +N E+L  +  RI+        +S  +  
Sbjct: 57  DSPTQLVGGAGFATEFEPVEHLERMLSLDNAFNTEELTAWAGRIHADVG----DSAAYLC 112

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP----RVLSLNIPEIIE 186
           E KIDG  +++ YE G+   A+ RGDG +GEDV+   R I  +P          +PE++E
Sbjct: 113 ELKIDGVALSLVYEGGRLTRASTRGDGRTGEDVTLNARTIEDVPERLSHSEDHRMPEVLE 172

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV+    DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    HGLG 
Sbjct: 173 VRGEVFFRVADFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGH 232

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           T        ++    ++  G PV+          G+    +     R  + ++IDG+V K
Sbjct: 233 TEGFRPATLHQAYLALQAWGLPVSQHTTLVADLAGVQERIDYWGEHRHEVDHEIDGVVVK 292

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G
Sbjct: 293 VDDVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAG 352

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +  ATLHN   +K            + + +GD V++++AG+VIP+V+  +V+ R    
Sbjct: 353 STVAQATLHNASEVKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSE 401

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F  P+ CP C + +  +      +  A  RC    +C  Q  ER+ H  SR+A +IE 
Sbjct: 402 REFVMPTTCPECGTPLAPE-----KEGDADIRCPNTRSCPGQLRERVFHVSSRNALDIEM 456

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +           A  I    D+F L   +   T       G    +   L  +++K 
Sbjct: 457 LGYEAGAALLS----ARVIGDEGDLFGLTEEELLRTDLFRTKAGDLSANGRRLLANLDKA 512

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   L R + +L IRHVG   AR+LA  + S                     L  V  VG
Sbjct: 513 KAAPLWRVLVALSIRHVGPTAARALATEFGSIDAIVSATT----------EQLAAVEGVG 562

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             IA A+ E++    +   VE             + +V   +    +V TG+L    R +
Sbjct: 563 PTIASAVSEWFTVDWHREIVEKWRAAGVRMADERDDSVPRTLAGVTVVVTGSLPGFSRDE 622

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+E +   G   +  +S+KT  ++ GD PGSK +KA +LGV I++E+ F  LL+Q
Sbjct: 623 AKEAIVTRGGKAAGSVSKKTSYVVAGDAPGSKYDKAVELGVPILDEDGFRKLLEQ 677


>gi|324324305|gb|ADY19565.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 669

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 245/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  +K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+    A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFE----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|312622179|ref|YP_004023792.1| DNA ligase, nad-dependent [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202646|gb|ADQ45973.1| DNA ligase, NAD-dependent [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 673

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 238/703 (33%), Positives = 379/703 (53%), Gaps = 47/703 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  
Sbjct: 5   IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     +V H +P LSL  ++N  +L  F  R+         ++  + +E KIDG
Sbjct: 62  RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLG---TSNFDYVVEYKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE G F+  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K+
Sbjct: 119 LSVALEYENGLFIRGATRGDGNVGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMPKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
           +F+ LN E        +ANPRNAA+G LR+L+P    +          +  E   +   E
Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPRITAQRKLDIFVFNVQWCEKELETHAE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ ++ LGF V+                 +++  R  LP++IDG V K+++  L+   G
Sbjct: 237 ALEFLKHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           E A+SPRW +++KF  ++  T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN 
Sbjct: 297 ETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R    + F  P  CP+
Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + V++  +        A+RCTG   C A+    + HFVSRDA +I G+G+  +   F+
Sbjct: 406 CGADVIKFEDE------VAYRCTGV-ECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+ PADI+ L+     +      +  FG  S  NL  +I   +N  L+R I++
Sbjct: 459 K----GLIKTPADIYYLKFEDLVN------LERFGVKSTNNLLKAIQASKNRPLDRLIYA 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G + A++LA++  S  +                  L+ +P  G+ +A+++V F+
Sbjct: 509 LGIRHIGQKAAKTLAEHISSIDDLFTITE----------EQLLSLPDFGEKMAKSVVTFF 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +  +    +E L      ++   +      ++    V TG L K  R++A+E +  LGA 
Sbjct: 559 RQDQTKHLIERLKAAGVNTVSEKKAKSD-ILKGYTFVLTGALSKYSRNEAKEILESLGAK 617

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+KT  +IVG +PGSK  KAQQLGVKI+NEE F  L++
Sbjct: 618 VTESVSKKTTAVIVGQDPGSKFTKAQQLGVKILNEEDFEKLVK 660


>gi|229042193|ref|ZP_04189947.1| DNA ligase [Bacillus cereus AH676]
 gi|228727128|gb|EEL78331.1| DNA ligase [Bacillus cereus AH676]
          Length = 669

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   ++SY  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVISYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKEIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|219667570|ref|YP_002458005.1| DNA ligase, NAD-dependent [Desulfitobacterium hafniense DCB-2]
 gi|254781313|sp|B8FP44|DNLJ_DESHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219537830|gb|ACL19569.1| DNA ligase, NAD-dependent [Desulfitobacterium hafniense DCB-2]
          Length = 659

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 235/706 (33%), Positives = 368/706 (52%), Gaps = 49/706 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + + +L ++I   +  YY   +P + D+EYDAL +    +    P+      P+ 
Sbjct: 1   MSDVSQRIEALREQIEEANYQYYGLDQPTLSDAEYDALLQELIRLEKEHPEFL---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG +     KV H+   LSL+  ++  DL +F  R+           + + +E K
Sbjct: 58  PSQRVGGYIAKEFPKVRHAEALLSLDNAFDAGDLLEFDRRVRSMV-----AEVEYVVELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  + + YE G  V  A RGDG  GE+++A ++ IP IP  L     + ++VRGE Y+
Sbjct: 113 IDGLTVALTYEDGALVRGATRGDGEVGEEITANLKTIPAIPLRLRKQ-ADRLDVRGEGYM 171

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAK 252
            K  FL LN E    G+  +ANPRNAA+G LR+L+      R L +F + +    E    
Sbjct: 172 PKGSFLRLNQEREEAGQPLFANPRNAAAGSLRQLDSRITAQRKLGYFAYQVLTPEEGELA 231

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q  +L  ++  GF VN   R  +    +++Y  EM   R   PYDIDGLV KV++ + Q
Sbjct: 232 SQTAVLDYLKEQGFSVNPEYRVFSAIEEVIAYCGEMVEKRHNYPYDIDGLVIKVNDIAQQ 291

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  A+SPRW I++KF  +Q  T + DI I++GRTG+LTP A L PV + G+ +  AT
Sbjct: 292 RELGFTAKSPRWAIAYKFPAEQVETVVEDIVIRVGRTGVLTPTAYLTPVFVAGSTVGRAT 351

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+            +D+R+GD VL+++AG+VIP+VV I+  +R    + F  P 
Sbjct: 352 LHNLDNIR-----------AKDVRIGDHVLIQKAGDVIPEVVKILPEKRTGGERIFEMPE 400

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP CQS V+R+         AAHRCT  + C A+Q E + HFVSR+A NI+GLG   + 
Sbjct: 401 LCPECQSPVIREEGE------AAHRCTS-ITCPARQREAIIHFVSRNAMNIDGLGPAVIY 453

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +    A  I+  AD++ L+         +  +   G  S  NL  +I   +   L  
Sbjct: 454 QLLE----AGLIKDAADLYALEYD------ALVPLERLGKKSAENLLKAIEDSKERGLAP 503

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF LGIRHVG +  + LA+ Y + ++  +               L  +P VG  +AQ++
Sbjct: 504 LIFGLGIRHVGEKAGKILAQKYGTMEDLEKA----------QVEELQEIPDVGPAMAQSV 553

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            +F+Q       +  L +       +H          K +V TG+LQ+  RH  +  + +
Sbjct: 554 AQFFQQESTHHFLNKLRQAGVVMSAQHSAK-PQIFAGKSIVVTGSLQRWDRHYVETMIEE 612

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            G   ++ +S+KT  ++ G+  GSKL KA++LG+ +++EE+F  LL
Sbjct: 613 FGGKAASSVSKKTAFVVAGEKAGSKLAKAKELGIPVLSEEEFAELL 658


>gi|288927843|ref|ZP_06421690.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330677|gb|EFC69261.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 665

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 218/710 (30%), Positives = 355/710 (50%), Gaps = 49/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E+ +  +  L +++ +H+  YY  + P + D E+D L R    +    P+     DPN 
Sbjct: 1   MEEIK-RIEELREQLHHHNYLYYVQNSPTLSDQEFDRLMRELQDLEAKHPE---VYDPNS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +++    +V H    LSL   +N +++  +   + +              E K
Sbjct: 57  PTQRVGSDLSTGFTQVKHKYAMLSLANTYNEQEVASWYATVSKDLG---GQPFEVCCELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
            DG  I++ YE+G+ V A  RGDG  G+DV+A +R I  IP VL     P   E+RGE+ 
Sbjct: 114 YDGLSISLTYEQGRLVRAVTRGDGEQGDDVTANVRTIRAIPLVLPGTGYPNEFEIRGEIL 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +    F  LN ++   G    ANPRNAA G L+  +P  + +             ++ + 
Sbjct: 174 MPWKVFEQLNVKLEKAGETLLANPRNAAVGALKSHDPRLVAKRKLDAYLYYLLGDDLPSD 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
           G YE L+     GF V+ G+ +A +   I  + N   + R  LP   DG+V KV+    Q
Sbjct: 234 GHYENLKAAETWGFKVSQGMHKATSLEQIYEFINHWDTARHDLPVATDGIVLKVNSLRQQ 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  A+SPRW I++KF  ++  TRL ++  Q+GRTG +TPVA +EPV + G  +  AT
Sbjct: 294 QQLGFTAKSPRWAIAYKFKAERVCTRLNEVTFQVGRTGAVTPVANMEPVLLAGTTVKRAT 353

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L+NED+I+ L           D+ +GD V V++ GE+IPK+V + V+ R P+ QP  F S
Sbjct: 354 LNNEDFIRSL-----------DLHIGDNVFVEKGGEIIPKIVGVDVSHRSPNLQPVHFIS 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S +VR          AA+ C     C  Q   R++HF++R A NI+ +G + +D
Sbjct: 403 NCPECGSPLVRYAGE------AAYYCPNDTGCPPQIKGRIEHFIARKAMNIDSIGPETVD 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            +F+       +R  AD++ ++  Q           G    S   +   I    +   ER
Sbjct: 457 DYFRR----GIVRNVADLYEIRTEQING-------DGTRQKSAQKIVKGIQDSVSTPFER 505

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F+LGIR VG   A+ LAK++ S                     L+ V  VG +IA+++
Sbjct: 506 VLFALGIRFVGETTAKLLAKHFKSIDALMVATP----------EQLVEVEGVGTVIAESV 555

Query: 613 VEFYQNPRNICAVEALLKEVSPSIG--RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           V F+ +  N+  +E L +           ++  S ++  K +V +G  ++  R + +E +
Sbjct: 556 VRFFHDEVNLNIIERLRQYGLQMSQSVDQQQPASEKLAGKNIVISGVFEQHSRDEYKEMI 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G    + +S KT  I+ G N G SK++KAQQLG+ +++E  FL +L+
Sbjct: 616 ERNGGKNVSSISSKTSFILAGANMGPSKMQKAQQLGIDMIDESAFLKMLE 665


>gi|293376177|ref|ZP_06622422.1| DNA ligase (NAD(+)) [Turicibacter sanguinis PC909]
 gi|292645164|gb|EFF63229.1| DNA ligase (NAD(+)) [Turicibacter sanguinis PC909]
          Length = 669

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 247/708 (34%), Positives = 369/708 (52%), Gaps = 53/708 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L + ++ ++  YY   KP + D EYD L +    +    P+L        P  +
Sbjct: 10  KLRIEELTKLLTQYNHEYYVLDKPSVSDREYDRLMQELMELEEKHPELK---SNTSPTVR 66

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K+ H  P LSL   +N  DLR F TR+ +           +  E KIDG 
Sbjct: 67  VGGKVLEGFNKIEHEKPMLSLSNAFNEGDLRDFDTRVKKV-----SPKATYVCELKIDGL 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+ Y  G FV  A RGDG  GED+S  ++ I TIP  ++ N P  +EVRGEVY+SK  
Sbjct: 122 AVTLHYNNGAFVKGATRGDGVIGEDISENLKTIKTIPLHINNNQP--LEVRGEVYMSKAT 179

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
              LN+E  A G + +ANPRNAA+G LR+L+      R L  F + +   +++      E
Sbjct: 180 LEKLNEERAAKGEELFANPRNAAAGSLRQLDSRIAAKRNLAMFCYAVPSAADLGCTTHEE 239

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQK+  LGF VN   +       ++ Y N   + R  LPY+IDG+V KV++   Q +LG
Sbjct: 240 SLQKISELGFNVNPNRQVCENIDEVLEYINRWTNARFDLPYEIDGIVIKVNQLQEQDKLG 299

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T L DI   +GRTG++TP A LEPV + G  ++ ATLHNE
Sbjct: 300 NTVKSPRWAIAYKFPAEEVETILTDIIFTVGRTGMVTPNAVLEPVRVAGTRVSRATLHNE 359

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DY+             RDIR+ DRV++++AGE+IP+VV  +++ R+ D  PF   S CP 
Sbjct: 360 DYVTS-----------RDIRINDRVIIRKAGEIIPEVVKPVIDARNGDEIPFEMISTCPR 408

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR+                 + C A+ +E L HFVSRDA NI+GLG + ++  F+
Sbjct: 409 CSSELVREAGEAD-------YYCLNIDCPARIVESLSHFVSRDAMNIDGLGIKVVEQLFE 461

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I   ADI+ L + Q         +   GD   TNL ++I   +  SLE+ +F 
Sbjct: 462 HK----LIENVADIYRLTKEQL------LPLERMGDKKATNLLNAIEASKENSLEKLLFG 511

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ A+ LA  + +  +               +     V  VGD+IA +IV ++
Sbjct: 512 LGIRHVGSKTAKVLATQFENMDSLMDA----------KFDDFKVVAEVGDVIANSIVHYF 561

Query: 617 QNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
               N+  ++ L +       +     + N       K +V TGTL+ + R +A   +  
Sbjct: 562 SQTANVELIDQLKELGLNMSYKGARLADANTEHVFFGKTVVLTGTLETLSRKEAGIKLES 621

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           LGA VS  +S  TD +I G   GSKL KAQQLGV +++E  FL ++ +
Sbjct: 622 LGAKVSGSISSNTDYLIAGAKSGSKLTKAQQLGVTVLDEATFLSMMNE 669


>gi|238026897|ref|YP_002911128.1| DNA ligase, NAD-dependent [Burkholderia glumae BGR1]
 gi|237876091|gb|ACR28424.1| DNA ligase, NAD-dependent [Burkholderia glumae BGR1]
          Length = 747

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 251/770 (32%), Positives = 377/770 (48%), Gaps = 94/770 (12%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            Q  +  + L QE+   +  YY   +P +LD+EYD L R    I    PD      P+ P
Sbjct: 12  SQPSERAAWLRQELERANHAYYVLDQPELLDAEYDRLFRELQQIEAEHPDFI---TPDSP 68

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NSIFFT 129
             ++GGE       V H  P LSL   +  ED+  F  R+     K  D       + + 
Sbjct: 69  TQRVGGEAADGFTPVLHDAPMLSLNNGFTDEDIAAFDKRVADALGKAVDLAGTAEPVEYA 128

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEVR 188
            E K DG  I++RY  GKF  AA RGDG +GEDV+  +R I +IP  L    P  +++VR
Sbjct: 129 CELKFDGLAISLRYVHGKFTQAATRGDGTTGEDVTENVRTIKSIPLTLKGKHPPALLDVR 188

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV + K DF  LN+   A  ++ +ANPRNAA+G LR+L+      R L+FF +G+G   
Sbjct: 189 GEVLMYKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKVTAQRPLSFFAYGIGVLD 248

Query: 248 E-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                     +L     LG PVN          G++ ++ ++   R  LPYDIDG+VYKV
Sbjct: 249 GAPMPDTHSGLLDWYESLGLPVNRERAVVQGAEGLLDFFRKVGEKREALPYDIDGVVYKV 308

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +    Q +LG  +R+PR+ ++HKF  ++A TRL+ I++Q+GRTG +TPVARLEPV +GGA
Sbjct: 309 NRRDEQDRLGFVSRAPRFALAHKFPAQEARTRLVAIEVQVGRTGAITPVARLEPVFVGGA 368

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK-------------- 412
            +TNATLHNED ++            +DIRVGD V+V+RAG+VIP+              
Sbjct: 369 TVTNATLHNEDEVRR-----------KDIRVGDTVIVRRAGDVIPEVVGRDGPHAMQVRV 417

Query: 413 -----------------------VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP-- 447
                                  +       +  D +       C         +  P  
Sbjct: 418 RFRGVRTVARRNRLRAAASSGRPMTWKPRLLKPTDRRGIRVRRGCLRPSLFEFVEQEPFR 477

Query: 448 ------------KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
                       +     A  RCTGGL C AQ+ + L HF  R A +I+GLG++ +D   
Sbjct: 478 MPTECPVCGSRIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV 537

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       +R PAD+F L          +  +  F + S  NL DS+ K R+ +L RFI+
Sbjct: 538 EQN----LVRTPADLFHL------GFATLAALDRFAEKSAQNLLDSLEKARHTTLARFIY 587

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIRHVG   A+ LAK++ + Q                  +L+ V  VG ++A+++ +F
Sbjct: 588 ALGIRHVGESTAKDLAKHFGALQPIMDA----------SIDALLEVNDVGPVVAESLHQF 637

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +    N   +  L ++V    G          +  K +V TGTL  + R +A+  +   G
Sbjct: 638 FAEEHNRTVIAQLREKVDWPEGPPAPREPQGVLAGKTVVLTGTLPTLSRDEAKALLEAAG 697

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           A V+  +S+KTD ++ G   GSKL KA++LG+ +++E+    LL+  + +
Sbjct: 698 AKVTGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMHQLLKGESPS 747


>gi|213962174|ref|ZP_03390438.1| DNA ligase, NAD-dependent [Capnocytophaga sputigena Capno]
 gi|213955180|gb|EEB66498.1| DNA ligase, NAD-dependent [Capnocytophaga sputigena Capno]
          Length = 663

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 233/705 (33%), Positives = 368/705 (52%), Gaps = 49/705 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L +E++ H+  YY    P I D E+D   +   A+  A P+     D N P  +
Sbjct: 2   KEKIQQLREELNQHNYNYYILDNPTISDYEFDQKLKELQALEQAHPEF---YDENSPTVR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  S   V H     SL+  ++ EDL ++  RI +       + I FT E K DG 
Sbjct: 59  VGGTITKSFPTVVHEYRMYSLDNSYSKEDLEEWEQRIIKTLG---SDQINFTCELKYDGA 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I + YE GK   A  RGDG  G+D++A +R I ++P  L  + PE   +RGE+ + K  
Sbjct: 116 SIDLLYENGKLKQATTRGDGIQGDDITANVRTIRSVPLQLKGDYPERFYIRGEIVMPKKA 175

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E IA G  P+ NPRN ASG L+  +  +   R L+  ++ L        K Q+E
Sbjct: 176 FENLNKERIAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFL--VGNTGVKSQFE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K R  GF V N  +  ++   ++ + NE  + R TLPY+ DG+V KVD  + Q++LG
Sbjct: 234 SLEKAREWGFKVPNISKLCHSTAEVMDFINEWDTKRHTLPYETDGVVIKVDSIAQQEELG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++SPRW +++KF  +Q  T L  I  Q+GRTG +TPVA L+PV + G ++  A+LHN 
Sbjct: 294 YTSKSPRWAMAYKFKAEQVDTILESISYQVGRTGAITPVANLKPVLLAGTVVKRASLHNA 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DIR+GD V V++ GE+IPK+V + +++R  DAQP  + + CP 
Sbjct: 354 DQIEKL-----------DIRIGDSVYVEKGGEIIPKIVGVNLDKREADAQPVQYITHCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + ++R+         A H C    +C  Q   +++HF+SR A +IEGLG++ ++  F+
Sbjct: 403 CSTELIRNEGE------AQHYCPNTYSCPPQITGKIQHFISRKAMDIEGLGEETVEQLFR 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  I   AD++ +         K+  +      S  N+   I K + I  ER +F+
Sbjct: 457 ----AGIIHTYADLYEVTVE------KLLPLERMAQKSAENIVKGIQKSKEIPFERVLFA 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR+VG  +A+ LA++Y + +                   L+ V  +G+ IA ++V F+
Sbjct: 507 LGIRYVGETVAKKLARHYKNIEALENAT----------IEQLVEVDEIGNQIATSVVNFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            +  N   ++ L           E        ++    V +G      R + +  + Q G
Sbjct: 557 ADDYNRKLIDRLKSYGLQFALSEESTEGHTDTLKGLTFVVSGVFHLYSRDELKALIEQHG 616

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
             V + +S KT+ +IVGDN G SK EKA+QLGVK+++EE+F  L+
Sbjct: 617 GKVGSSISSKTNYVIVGDNMGPSKKEKAEQLGVKMISEEEFQSLI 661


>gi|229188563|ref|ZP_04315602.1| DNA ligase [Bacillus cereus ATCC 10876]
 gi|228594752|gb|EEK52532.1| DNA ligase [Bacillus cereus ATCC 10876]
          Length = 669

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 245/715 (34%), Positives = 385/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  +K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ISSHGESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|319941620|ref|ZP_08015944.1| DNA ligase [Sutterella wadsworthensis 3_1_45B]
 gi|319804850|gb|EFW01704.1| DNA ligase [Sutterella wadsworthensis 3_1_45B]
          Length = 745

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 260/721 (36%), Positives = 392/721 (54%), Gaps = 43/721 (5%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
              ALS +QA   +  LE E+   +  YY   +P + D+EYD       A+   FP+L  
Sbjct: 48  DAAALSPDQAPARMHQLETELERWNYEYYVLDEPSVPDAEYDRAFNELKALEARFPELK- 106

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQK-KDDN 124
                 P  ++GG +     KV H +P LS+  E  ++      F  R+        +D 
Sbjct: 107 --SRTSPTLRVGGAVRTGFKKVRHDVPMLSIHTETDFSAAGAAAFDERVRSALGLSPEDP 164

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + +  E K DG    +RYEKG    A+ RGDG  GEDV+A +R I TIP  L+  +P+I
Sbjct: 165 PVEYDCELKFDGLATNLRYEKGVLTEASTRGDGVEGEDVTANVRTIRTIPLRLNGKVPDI 224

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +EVRGE  + K DFLALN    A G KP+ANPRNAA+G LR+L+ +    R L+F+ + L
Sbjct: 225 LEVRGECIMHKADFLALNARQEAAGEKPFANPRNAAAGSLRQLDSSVTAQRTLHFYGYSL 284

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G+ SE FA+ Q  +L +   LGFPV +          + ++++++ + R++LP++IDG+V
Sbjct: 285 GEVSEPFAETQSGVLDRFAELGFPVAHMREVVKGPEALAAFHDKVAAARASLPFEIDGVV 344

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKV+   L+++LG  AR PRW  +HK+  ++  T++L ID+Q+GRTG LTPVARL PV +
Sbjct: 345 YKVNSLELEEELGFIAREPRWACAHKYPPEEVLTQVLGIDVQVGRTGRLTPVARLAPVYV 404

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  ++NATLHNED++              D+RVGD V+++RAG+VIP+++ ++   R  
Sbjct: 405 GGVTVSNATLHNEDHV----------VKDLDLRVGDTVVLRRAGDVIPEILRVVKERRPA 454

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             + F  P  CPIC S V+RD   K        RCTGGL C AQ    + HF +R A  I
Sbjct: 455 GTKVFEMPHVCPICGSAVIRDEEEKD------MRCTGGLVCPAQMKLSIVHFAARRAMGI 508

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE-----NILGFGDVSVTNL 538
           +GLG++ +D           ++ PAD+F L     T+ T             G  +  NL
Sbjct: 509 DGLGEKIVDMLVDE----GLVKTPADLFGLTLEALTAPTTATAGSEKPEKRMGPKAAANL 564

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             SI    + +L RF+F+LG RHVG   A  LA ++ +                    +L
Sbjct: 565 LASIQASTHTTLARFVFALGCRHVGEATALGLANHFGTLSAIENA----------SMEAL 614

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
             VP VG+++A++I  F++ P N   ++AL+          EK   S +  K  V TGTL
Sbjct: 615 TGVPDVGEVVAESIYAFFREPHNRTVIDALIARG-IRWPAVEKTAPSLVSGKTFVLTGTL 673

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R +A++ +T  GA V+  +SR+T  ++ G + GSKL KA++LG+ +++E + L LL
Sbjct: 674 PTLSRDEAKDRLTAQGAKVAGSVSRRTWCVVAGADAGSKLSKAEELGIPVIDEAKLLMLL 733

Query: 719 Q 719
            
Sbjct: 734 D 734


>gi|262382012|ref|ZP_06075150.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_33B]
 gi|262297189|gb|EEY85119.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_33B]
          Length = 664

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 229/708 (32%), Positives = 354/708 (50%), Gaps = 50/708 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              ++ +L  E+  H+  YY  S P I D E+D + +    +  A P+ A   DP+ P  
Sbjct: 2   VEAKIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFA---DPDSPTR 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G +++    +V H  P LSL   ++ +++R F  R  R      +       E K DG
Sbjct: 59  RVGSDLSKEFEQVVHKYPMLSLGNTYSEDEIRDFYDRTVRSL----NEPFEIVAELKYDG 114

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195
           T I++ YEKG+   A  RGDG  G+DV+A I+ I ++P  L   + PE  E+RGEV +  
Sbjct: 115 TSISLTYEKGRLTRAVTRGDGTRGDDVTANIKTIRSVPLRLRGSDFPEEFEIRGEVLLPW 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
            +F  LN E        +ANPRNAASG L++ NP  +                + A+G Y
Sbjct: 175 AEFDRLNKEREEQEEPLFANPRNAASGTLKQQNPAIVASRKLDAYFYYLLGENLPAEGHY 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ  R  GF + + +R+  +   I  Y       R  LP   DG+V KV+    Q+ L
Sbjct: 235 ENLQAARAWGFKIPDVIRKCQSLQDIFDYIAYWDVERKNLPVATDGIVLKVNSLRQQRNL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  ++SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA LEPV + G ++  A+LHN
Sbjct: 295 GFTSKSPRWAIAYKFQAERAETRLNLVSFQVGRTGTVTPVANLEPVLLAGTVVKRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434
            D I+GL           D+ +GD+V V++ GE+IPK+V + V  R         F   C
Sbjct: 355 ADIIEGL-----------DLHIGDQVYVEKGGEIIPKIVGVNVEARSMLMGDKVRFIRVC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +VR          AAH C     C  Q   R++HFV+R A NI    +      
Sbjct: 404 PECGTPLVRPEGE------AAHYCPNESGCPPQIKGRIEHFVTRKAMNINIGPET----- 452

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +    A  ++  AD++TL          +  +  + + S  NL  S+ + + +  ER +
Sbjct: 453 VEDLYNAGYVKDSADLYTLTVAD------LLRLERWAEKSAQNLMSSLEESKQVPFERVL 506

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIR VG  +A+ LA  + S +   Q               L+ V  +G+ IAQ+++ 
Sbjct: 507 FGLGIRFVGETVAKRLASAFHSIEALEQA----------SLEDLVAVDEIGERIAQSVLS 556

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++ + +N   V  L ++        E+  N S +++   +V +GT  K  R + +  + Q
Sbjct: 557 YFSDEKNRTLVNRLKEQGLRMAVSEEQLANRSEKLKGLTIVISGTFSKHSRDEYKAMIEQ 616

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            G   S  +S KTD I+ G+N G +KLEKA +LGVKI+NE+ FL +L+
Sbjct: 617 HGGKNSGSVSGKTDYILAGENMGPAKLEKAAKLGVKIINEDAFLNMLE 664


>gi|206967609|ref|ZP_03228565.1| DNA ligase, NAD-dependent [Bacillus cereus AH1134]
 gi|228950848|ref|ZP_04112971.1| DNA ligase [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|229068048|ref|ZP_04201356.1| DNA ligase [Bacillus cereus F65185]
 gi|229077651|ref|ZP_04210281.1| DNA ligase [Bacillus cereus Rock4-2]
 gi|229176884|ref|ZP_04304280.1| DNA ligase [Bacillus cereus 172560W]
 gi|206736529|gb|EDZ53676.1| DNA ligase, NAD-dependent [Bacillus cereus AH1134]
 gi|228606557|gb|EEK63982.1| DNA ligase [Bacillus cereus 172560W]
 gi|228705592|gb|EEL57948.1| DNA ligase [Bacillus cereus Rock4-2]
 gi|228715056|gb|EEL66923.1| DNA ligase [Bacillus cereus F65185]
 gi|228808777|gb|EEM55273.1| DNA ligase [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 669

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 245/715 (34%), Positives = 385/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  +K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ISSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|228906068|ref|ZP_04069957.1| DNA ligase [Bacillus thuringiensis IBL 200]
 gi|228853477|gb|EEM98245.1| DNA ligase [Bacillus thuringiensis IBL 200]
          Length = 669

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 386/715 (53%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGTILDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ S
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVS 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|294054681|ref|YP_003548339.1| DNA ligase, NAD-dependent [Coraliomargarita akajimensis DSM 45221]
 gi|293614014|gb|ADE54169.1| DNA ligase, NAD-dependent [Coraliomargarita akajimensis DSM 45221]
          Length = 711

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 217/702 (30%), Positives = 359/702 (51%), Gaps = 47/702 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KE++ L   I  HD  YY+ ++P I D  YD LK R  A+    P+L   +  + P   +
Sbjct: 54  KEIAQLRAAIEKHDRLYYKKAQPEIDDQAYDRLKARLTALESQNPEL---DFGSSPTQTV 110

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +   S     H  P LSL+  +N ++L  F  R+ + +    + ++ F +EPKIDG  
Sbjct: 111 GDDRLESFESYVHRKPMLSLDNTYNRDELIDFGKRLEKRF---PNQALNFLVEPKIDGVA 167

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +++ YE+G+F+ A  RG+G  G+D++  +R I  +P  +    P+I+EVRGE+Y+  ++F
Sbjct: 168 VSLTYEEGQFIRAVSRGNGSEGDDITQNVRHIEGLPLQIEEA-PDILEVRGEIYMRHSEF 226

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG-KTSEIFAKGQYE 256
             +N    A G   YANPRN A+G ++ LNP +   R L+  ++G+G    + +   Q E
Sbjct: 227 ERINAVREAAGEPLYANPRNLAAGTIKLLNPNEARARRLDIVLYGIGACEPQNYFVRQTE 286

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           + Q+++   FPV      ++      +   E+ S R    Y  DG V K+D+F+LQ+Q G
Sbjct: 287 IQQRLKEWHFPVLEKYWLSSNIVEAWASIEELDSRRQRFTYPTDGAVVKLDDFALQQQAG 346

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF  ++A T L +I +QIGRTG +TPVA LEPV + G  ++ ATLHNE
Sbjct: 347 FTSKAPRWAIAYKFEAERAETLLKEISLQIGRTGAVTPVAILEPVQLAGTTVSRATLHNE 406

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR GD VLV++AGE+IP+V+ + +++R  D+  F F      
Sbjct: 407 DEIRR-----------KDIRPGDTVLVQKAGEIIPQVLGVNISKRPADSTTFDFAQHLSS 455

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
                 RD      ++V+            +Q   L+HF SR   +IE LG   ++    
Sbjct: 456 LGIDAERDPGEAVWRIVS-------KHDPIRQQRALQHFASRTCMDIENLGTAVVEQLVS 508

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                   R  AD++ LQ            +  F + S  NL +++   +   + + I  
Sbjct: 509 R----GLARTVADLYQLQLDDF------LQLEKFAEKSAQNLVEALEASKQRPVWQLIHG 558

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI HVG + A+ L  ++ S    A+               L  +  +G I+AQ+I  ++
Sbjct: 559 LGIPHVGKQSAKDLEAHFESLDALARASE----------EQLEAIDGIGSIMAQSIHAWF 608

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           ++  N   ++ L         +  +     +  K +V TGTL  + R++A   +   G  
Sbjct: 609 EDSENAELLDRLRTYGLNFRSQRSEPTGGALAGKTVVLTGTLPTMTRNEATALIEAAGGR 668

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            S+ +S+KTD ++ G+  GSK  KA++LGV I++E+ F  L+
Sbjct: 669 TSSSVSKKTDYLLTGEAAGSKYTKAEKLGVPILDEDAFRALI 710


>gi|121998657|ref|YP_001003444.1| DNA ligase, NAD-dependent [Halorhodospira halophila SL1]
 gi|166215780|sp|A1WY80|DNLJ_HALHL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|121590062|gb|ABM62642.1| DNA ligase, NAD-dependent [Halorhodospira halophila SL1]
          Length = 711

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 247/738 (33%), Positives = 379/738 (51%), Gaps = 60/738 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + EQA++ ++ L  EIS HD  YY   +P I D+EYDAL R    +  A+PDL      +
Sbjct: 7   TREQAQQRMAQLRGEISEHDYHYYVLDRPTISDAEYDALFRELQRLEAAYPDLV---SSD 63

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++ G        V H  P LSL+  +  +DL  F  RI          S+ +T EP
Sbjct: 64  SPTQRVAGTAQEGFEAVVHDTPMLSLDNAFEADDLVDFDRRIRDRLGVA---SVVYTGEP 120

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEV 191
           K+DG  +++ Y+ G+ V A  RGDGH+GEDV+A +R + ++P  L  +  P  +EVRGEV
Sbjct: 121 KLDGISLSLTYQDGELVRAGTRGDGHTGEDVTANVRTLRSVPLRLRGDGYPGRLEVRGEV 180

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            I K DF  LN   +  G +P+ANPRNAA+G LR+L+P     R L  F  G+G    + 
Sbjct: 181 VIRKEDFERLNQARLDAGERPFANPRNAAAGSLRQLDPRITARRPLTLFTFGVGDPLALG 240

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +  +++L+ +   GF     +          +Y + +   R  LP++IDG V+KVD+ +
Sbjct: 241 VESHWQVLECLAGWGFRTTAPLEHLEGVSACQAYRDRLIEERDALPFEIDGAVFKVDDLA 300

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +++QLG  AR+PRW ++ K   ++A+T +  I   +GRTG +TP+ARL+PV + G  +  
Sbjct: 301 VREQLGFTARAPRWALAFKLPAREATTVVEAIVPSVGRTGKITPLARLQPVEVSGVTVAR 360

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF-- 428
           A+LHN D +  +           D+R GD V+V+RAG+VIP++ D+++ +R   AQP+  
Sbjct: 361 ASLHNADELARM-----------DVREGDTVMVRRAGDVIPQITDVVLAKRPEGAQPWRF 409

Query: 429 -SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                 CP C S V R          AAHRC GGL C AQ+   + HF SR A +I+GLG
Sbjct: 410 EERVQACPECGSAVQRIEGE------AAHRCVGGLYCPAQREGAILHFASRRALDIDGLG 463

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ ++           +   AD+F L   Q         +   GD S  NL  ++++ R+
Sbjct: 464 EKIVEQLVAK----GLVVDLADLFRLGHAQLAG------LERMGDKSADNLLAALDRARS 513

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQE------------------INNII 588
            +L RF+++LGI HVG   AR LA+  Y       +                      ++
Sbjct: 514 TTLARFLYALGIPHVGEVTARRLAEAAYGLMVAVPRGDRAALRAAAGLDAQTAITSEALL 573

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVS-S 645
                    L  +  VG ++A+AI  F+  P N   V+ L       P     E+  S S
Sbjct: 574 RVMAAPADDLEAIEDVGPVVARAIAGFFAEPHNRQVVDHLCAAGVHWPEPDPPEQAESVS 633

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +  +  V TGTL+ + R +A+  +   G  V+  +SRKTD ++ G + GSKL KA++LG
Sbjct: 634 SLAGRAFVVTGTLETMTRDEAKAAIEACGGRVTGSVSRKTDYLVAGADAGSKLNKARELG 693

Query: 706 VKIMNEEQFLFLLQQYNT 723
           V+++NE     LL     
Sbjct: 694 VEVVNESGLRELLAGAGA 711


>gi|293557127|ref|ZP_06675681.1| DNA ligase, NAD-dependent [Enterococcus faecium E1039]
 gi|294614139|ref|ZP_06694060.1| DNA ligase, NAD-dependent [Enterococcus faecium E1636]
 gi|291592989|gb|EFF24577.1| DNA ligase, NAD-dependent [Enterococcus faecium E1636]
 gi|291600696|gb|EFF30994.1| DNA ligase, NAD-dependent [Enterococcus faecium E1039]
          Length = 679

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 234/720 (32%), Positives = 390/720 (54%), Gaps = 53/720 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            ++I++A K    L   ++     YY   KP + D  YD       AI   +PDL  S  
Sbjct: 5   EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS-- 62

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG++     KV H IP  SL  +++ E+L  F  R+ +   +     + +  
Sbjct: 63  -DSPTQRVGGKVLEGFEKVIHDIPLYSLNDVFSKEELIAFDQRVQKAVGRV----VDYCC 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +++RYE G FV  A RGDG  GE+++  ++ + ++P  L   +   IEVRGE
Sbjct: 118 ELKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMN--IEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            ++ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ +     +
Sbjct: 176 CFMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPM 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            AK QY+ L+++  +GF  N   R  ++   + +Y  E    R  LPY+IDG+V KV+EF
Sbjct: 236 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ QLG   ++PRW  ++KF  ++  T + +I+  +GRTG++TP A + PV + G  ++
Sbjct: 296 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN DYIK            +DIR+ D VL+ +AG++IP+V  +++++R  D++ + 
Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C S +V            A RC     C AQ  E L HFVSR+A NI+GLG +
Sbjct: 405 LPTHCPVCGSELVHLDEE------VALRCINPK-CPAQMKEGLNHFVSRNAMNIDGLGPR 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+  +  +     +   AD++ L   +  +      +    + S  N+  +I+  ++ S
Sbjct: 458 VLEQMYDKK----LVADVADLYKLTEEELLT------LDKIKEKSANNILTAIDNSKDNS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           +ER IF LGIRHVGA+ A+ LA+++   +  ++           D+ S+I +  +GDIIA
Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSRS----------DYESIIALDTIGDIIA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRH 664
            ++V ++ N      +  L +       +       + V S  + K +V TG L ++ R 
Sbjct: 558 DSVVTYFSNEEVHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTRLTRE 617

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           +A+E +  LG  V+  +S+KTDI++ G++ GSKL KAQ+LG+++  E+Q    L + ++ 
Sbjct: 618 EAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMAEALAKSHSA 677


>gi|222529603|ref|YP_002573485.1| DNA ligase, NAD-dependent [Caldicellulosiruptor bescii DSM 6725]
 gi|254781543|sp|B9MK54|DNLJ_ANATD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222456450|gb|ACM60712.1| DNA ligase, NAD-dependent [Caldicellulosiruptor bescii DSM 6725]
          Length = 673

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 238/703 (33%), Positives = 379/703 (53%), Gaps = 47/703 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            RK +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  
Sbjct: 5   IRKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     +V H +P LSL  ++N  +L  F  R+         ++  + +E KIDG
Sbjct: 62  RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELIG---TSNFDYVVEYKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE G F+  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K+
Sbjct: 119 LSVALEYENGLFIRGATRGDGNVGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMPKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
           +F+ LN E        +ANPRNAA+G LR+L+P    +          +  E   +   +
Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNIQWCEKELETHAQ 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ ++ LGF V+                 +++  R  LP++IDG V K+++  L+   G
Sbjct: 237 ALEFLKHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           E A+SPRW +++KF  ++  T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN 
Sbjct: 297 ETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DIR+GD V+V++A E+IP+VV+++ ++R    + F  P  CP+
Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + V++  +        A+RCTG   C A+    + HFVSRDA +I G+G+  +   F+
Sbjct: 406 CGADVIKFEDE------VAYRCTGV-ECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+ PADI+ L+     +      +  FG  S  NL  +I   +N  L+R I++
Sbjct: 459 K----GLIKTPADIYYLKFEDLVN------LERFGVKSTNNLLKAIQASKNRPLDRLIYA 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G + A++LA++  S  +                  L+ +P  G+ +A+++V F+
Sbjct: 509 LGIRHIGQKAAKTLAEHISSIDDLFTITE----------EQLLCLPDFGEKMAKSVVTFF 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +  +    +E L      ++   +      ++    V TG L K  R++A+E +  LGA 
Sbjct: 559 RQEQTRHLIERLKAAGVNTVSEKKAKSD-ILKGYTFVLTGALSKYSRNEAKEILESLGAK 617

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+KT  +IVG +PGSK  KAQQLGVKI+NEE F  L++
Sbjct: 618 VTESVSKKTTAVIVGQDPGSKFTKAQQLGVKILNEEDFEKLVK 660


>gi|225018630|ref|ZP_03707822.1| hypothetical protein CLOSTMETH_02580 [Clostridium methylpentosum
           DSM 5476]
 gi|224948624|gb|EEG29833.1| hypothetical protein CLOSTMETH_02580 [Clostridium methylpentosum
           DSM 5476]
          Length = 659

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 220/709 (31%), Positives = 355/709 (50%), Gaps = 51/709 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A+  ++ L +++ YH   YY    P I D +YDA+ R  + +   FP+L      
Sbjct: 1   MDKKDAQLRVAELTKQLHYHSHRYYVLDDPEISDFDYDAMLRELETLEAEFPEL---RSD 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG+ + S  KV H++   SL+  ++  ++  F  R+             + +E
Sbjct: 58  NSPTVRVGGQASNSFEKVAHAVQMGSLQDAFSDGEMLDFFRRVEEKIDHPV-----YVVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++ Y  G+F   + RGDG  GEDV+  +R I +IP  L+  +P + EVRGEV
Sbjct: 113 PKIDGLSVSLEYRDGEFFRGSTRGDGFIGEDVTQNLRTIRSIPLKLTRPLPYL-EVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           ++ ++ FL + +        P+ NPRNAA+G LR+ +P     R L+ +V  + +     
Sbjct: 172 FMPRDSFLKVVERQEIEEETPFKNPRNAAAGSLRQKDPKVVAERGLDIYVFNVQQIEGEE 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                + L  +R LGF V            ++     +   R   P+DIDG V KVD+FS
Sbjct: 232 LTSHKQSLDLLRGLGFKVIPRYNTFEDPQQVLDEIASIGDRRGEYPFDIDGAVVKVDDFS 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG  A+ P+W ++ K+  ++  T L  ID+ +GRTG LTPVA  +P+ + G  ++ 
Sbjct: 292 EREILGAGAKYPKWAMAFKYPPEEKETVLKQIDVNVGRTGALTPVALFDPIILAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A LHN+D+I             +DIR+GD ++V++AG++IP+VV +  +     ++PF  
Sbjct: 352 AVLHNQDFI-----------TEKDIRIGDTIVVRKAGDIIPEVVSVAKHA--EQSEPFLL 398

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C S VVR  +       AA RC     C A +L  + HF SR A NI+GLG   
Sbjct: 399 PEHCPVCGSEVVRVEDE------AAVRCENP-ECPATRLRNIIHFASRGAMNIDGLGTAN 451

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +     +      I+  AD++ L+R           +  F D SV NL  SI K +   L
Sbjct: 452 ITALIDN----GLIKSSADLYYLKREDL------LKLERFADKSVDNLLSSIEKSKGNEL 501

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R +F LGIR VG  +A+ L + Y +                     +  +  VG +IA 
Sbjct: 502 WRLLFGLGIRGVGQSVAKLLCEKYGNIDELMTAP----------AEEIDEIYGVGGVIAH 551

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            IV+++  P +   +E              +    ++     V TGTL  ++R +A+  +
Sbjct: 552 NIVQYFALPHSRQLIERFQAAGVNPTAVPVQKGD-KLAGLTFVITGTLPTMKREEAKALI 610

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            Q G   +  +S+KT  ++ G+  GSKL KAQ LGV +++EEQFL ++Q
Sbjct: 611 EQNGGKATGSVSKKTSYLLAGEEAGSKLTKAQSLGVPVLDEEQFLKMIQ 659


>gi|89896634|ref|YP_520121.1| hypothetical protein DSY3888 [Desulfitobacterium hafniense Y51]
 gi|122997178|sp|Q24QL5|DNLJ_DESHY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|89336082|dbj|BAE85677.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 659

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 235/706 (33%), Positives = 368/706 (52%), Gaps = 49/706 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + + +L ++I   +  YY   +P + D+EYDAL +    +    P+      P+ 
Sbjct: 1   MPDVSQRIEALREQIEEANYQYYGLDQPTLSDAEYDALLQELIRLEKEHPEFL---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG +     KV H+   LSL+  ++  DL +F  R+           + + +E K
Sbjct: 58  PSQRVGGYIAKEFPKVRHAEALLSLDNAFDAGDLLEFDRRVRALV-----AEVEYVVELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  + + YE G  V  A RGDG  GE+++A ++ IP IP  L     + ++VRGE Y+
Sbjct: 113 IDGLTVALTYEDGALVRGATRGDGEVGEEITANLKTIPAIPLRLRKQ-ADRLDVRGEGYM 171

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAK 252
            K  FL LN E    G+  +ANPRNAA+G LR+L+      R L +F + +    E    
Sbjct: 172 PKGSFLRLNQEREEAGQPLFANPRNAAAGSLRQLDSRITAQRKLGYFAYQVLTPEEGELA 231

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q  +L  ++  GF VN   R  +    +++Y  EM   R   PYDIDGLV KV++ + Q
Sbjct: 232 SQTAVLDYLKEQGFSVNPEYRVFSAIEEVIAYCGEMVEKRHNYPYDIDGLVIKVNDIAQQ 291

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  A+SPRW I++KF  +Q  T + DI I++GRTG+LTP A L PV + G+ +  AT
Sbjct: 292 RELGFTAKSPRWAIAYKFPAEQVETVVEDIVIRVGRTGVLTPTAYLTPVFVAGSTVGRAT 351

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+            +D+R+GD VL+++AG+VIP+VV I+  +R    + F  P 
Sbjct: 352 LHNLDNIR-----------AKDVRIGDHVLIQKAGDVIPEVVKILPEKRTGGERIFEMPE 400

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP CQS V+R+         AAHRCT  + C A+Q E + HFVSR+A NI+GLG   + 
Sbjct: 401 LCPECQSPVIREEGE------AAHRCTS-ITCPARQREAIIHFVSRNAMNIDGLGPAVIY 453

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +    A  I+  AD++ L+         +  +   G  S  NL  +I   +   L  
Sbjct: 454 QLLE----AGLIKDAADLYALEYD------ALVPLERLGKKSAENLLKAIEDSKERGLAP 503

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF LGIRHVG +  + LA+ Y + ++  +               L  +P VG  +AQ++
Sbjct: 504 LIFGLGIRHVGEKAGKILAQKYGTMEDLEKA----------QVEELQEIPDVGPAMAQSV 553

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            +F+Q       +  L +       +H          K +V TG+LQ+  RH  +  + +
Sbjct: 554 AQFFQQESTHHFLNKLRQAGVVMSAQHSAK-PQIFAGKSIVVTGSLQRWDRHYVETMIEE 612

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            G   ++ +S+KT  ++ G+  GSKL KA++LG+ +++EE+F  LL
Sbjct: 613 FGGKAASSVSKKTAFVVAGEKAGSKLAKAKELGIPVLSEEEFAELL 658


>gi|327475235|gb|AEA77212.1| DNA ligase [Exiguobacterium sp. EPVM]
          Length = 664

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 241/711 (33%), Positives = 385/711 (54%), Gaps = 52/711 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  + + ++ Q+++ +   YY   +P + D+EYD L      I   +P+L     P+ P 
Sbjct: 2   EMAERVEAIRQKLNQYGYEYYVLDRPSVPDAEYDRLMNELIEIETDYPEL---RSPDSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG    +  KVTH  P LSL  +++ E+L +++ RI +        S  F  E K D
Sbjct: 59  QRVGGAPLDAFVKVTHDTPMLSLGNVFSKEELVEWVDRIEKDLG----YSPLFVAELKFD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  ++++YE G+FV  A RGDG +GED++  +R I +IP  L+ ++    EVRGE Y+ K
Sbjct: 115 GLAVSLKYEDGRFVRGATRGDGTTGEDITQNLRTIRSIPLRLNEDV--TFEVRGEAYMPK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254
             F  LNDE   +G   +ANPRNAA+G LR+L+     +R L FF +GL  T ++ A   
Sbjct: 173 RSFEHLNDERERLGEPLFANPRNAAAGSLRQLDSKIAASRNLAFFAYGLVSTDDLVAS-H 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L+ +R LG  V+     A+T   +  Y     + RS LPY+IDG+V KV  +  Q+Q
Sbjct: 232 DESLEYLRHLGIAVSQEYTTAHTAEELWGYIETYVTKRSELPYEIDGIVIKVAGYEEQEQ 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW +++KF  ++  T + D+D  +GRTG +TP AR  PV++ G+ +T ATLH
Sbjct: 292 LGFTAKSPRWAVAYKFPAEEVVTTIEDVDFSVGRTGKVTPRARFAPVSVAGSTVTYATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED+I             +D+ +GDRV++K+AG+VIP VV  +V+ER  +     FP+ C
Sbjct: 352 NEDFI-----------LEKDLHIGDRVVIKKAGDVIPAVVSALVSERTGEETEIVFPTHC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C+S +VR          A HRC     C AQ LE L HFVSR A NI+GLG++ +   
Sbjct: 401 PACESELVRLEGE------ADHRCVNP-ECPAQLLEGLIHFVSRPAMNIDGLGEKVITQL 453

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
             S+     +   AD++ L R        +  +   G+ SVTNL  +I++ +  SLER +
Sbjct: 454 HASD----LVHNVADLYRLDRD------ALLALDRMGETSVTNLLAAIDQSKQNSLERVL 503

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG + A  +A+ + + +   +               L  +  +G  +A++I  
Sbjct: 504 FALGIRLVGQKAAVLIAERFETMEAVMEA----------SIDELTSIDGIGTKMAESISL 553

Query: 615 FYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +++ P     V  L +          +   +  + +  K +V TG L ++ R +A + + 
Sbjct: 554 YFEKPEARDLVRELGEAGVNLTFKGAKRSVDTDAPLAGKTVVLTGKLHEMTRGEAGKKLE 613

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA V+  +S+ TD+++ G+  GSKL KA+ LG+++ +E   L  L + +
Sbjct: 614 LLGASVTGSVSKNTDLLVAGEKAGSKLTKAESLGIEVWDEAALLAFLAEQS 664


>gi|196045221|ref|ZP_03112453.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB108]
 gi|196023805|gb|EDX62480.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB108]
          Length = 669

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  +K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 ILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+    A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFE----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L  + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLAVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|118617527|ref|YP_905859.1| NAD-dependent DNA ligase LigA [Mycobacterium ulcerans Agy99]
 gi|166216215|sp|A0PPW9|DNLJ_MYCUA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118569637|gb|ABL04388.1| DNA ligase [NAD dependent] LigA [Mycobacterium ulcerans Agy99]
          Length = 683

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 217/708 (30%), Positives = 347/708 (49%), Gaps = 43/708 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++   L +++  H   YY    P+I D+E+D L RR +A+   +P+L     P+ P   +
Sbjct: 3   RQWQELAEQVREHQFRYYVRDAPVITDAEFDELLRRLEALEEQYPEL---RTPDSPTQLV 59

Query: 79  GGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG         V H    LSL+  +N E+L  +  RI+        +S  +  E KIDG 
Sbjct: 60  GGAGFATEFEPVEHLERMLSLDNAFNTEELTAWAGRIHADVG----DSAAYLCELKIDGV 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP----RVLSLNIPEIIEVRGEVYI 193
            +++ YE G+   A+ RGDG +GEDV+   R I  +P          +PE++EVRGEV+ 
Sbjct: 116 ALSLVYEGGRLTRASTRGDGRTGEDVTLNARTIEDVPERLSHSEDHRMPEVLEVRGEVFF 175

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
              DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    HGLG T      
Sbjct: 176 RVADFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHTEGFRPA 235

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             ++    ++  G PV+           + +  +     R  + ++IDG+V KVD+ +LQ
Sbjct: 236 TLHQAYLALQAWGLPVSQHTTLVADLAEVQARIDYWGEHRHEVDHEIDGVVVKVDDVALQ 295

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ +  AT
Sbjct: 296 RRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVAQAT 355

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   +K            + + +GD V++++AG+VIP+V+  +V+ R    + F  P+
Sbjct: 356 LHNASEVKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFVMPT 404

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +  +      +  A  RC    +C  Q  ER+ H  SR+A +IE LG +   
Sbjct: 405 TCPECGTPLAPE-----KEGDADIRCPNTRSCPGQLRERVFHVSSRNALDIEMLGYEAGA 459

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                   A  I    D+F L   +   T       G    +   L  +++K +   L R
Sbjct: 460 ALLS----ARVIGDEGDLFGLTEEELLRTDLFRTKAGDLSANGRRLLANLDKAKAAPLWR 515

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            + +L IRHVG   AR+LA  + S                     L  V  VG  IA A+
Sbjct: 516 VLVALSIRHVGPTAARALATEFGSIDAIVAATT----------EQLAAVEGVGPTIASAV 565

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            E++    +   VE             + +V   +    +V TG+L    R +A+E +  
Sbjct: 566 SEWFTVDWHREIVERWRAAGVRMADERDDSVPRTLAGVTVVVTGSLPGFSRDEAKEAIVT 625

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            G   +  +S+KT  ++ GD PGSK +KA +LGV I++E+ F  LL+Q
Sbjct: 626 RGGKAAGSVSKKTSYVVAGDAPGSKYDKAVELGVPILDEDGFRKLLEQ 673


>gi|259047691|ref|ZP_05738092.1| DNA ligase, NAD-dependent [Granulicatella adiacens ATCC 49175]
 gi|259035882|gb|EEW37137.1| DNA ligase, NAD-dependent [Granulicatella adiacens ATCC 49175]
          Length = 668

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 225/706 (31%), Positives = 373/706 (52%), Gaps = 53/706 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++ +  L+++++     YY   KP   D+EYD       A+    P+   +   + P  
Sbjct: 7   IQQRIEQLKEQLNRWSHEYYVEDKPTATDAEYDKAYHELLALEKEHPEFVTA---DSPTQ 63

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GGE+     KVTH+ P LSL   ++ EDL +F  R+ +   +    +I +  E KIDG
Sbjct: 64  RVGGEVLEQFQKVTHTNPMLSLSNAFSKEDLEEFDARLRKLTNR----AIEYVCELKIDG 119

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I + Y+ G+    A RGDG +GEDV+  +R I ++P  L       IEVRGE Y+ K 
Sbjct: 120 LSIALTYQNGQLQLGATRGDGTTGEDVTGNVRTIKSVPLSLKEPWN--IEVRGECYMPKK 177

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255
            F+ALN      G + +ANPRNAA+G LR+L+P     R L+ F++      E+    Q 
Sbjct: 178 SFVALNKSREEEGLEVFANPRNAAAGSLRQLDPKIAAKRNLSVFLYSSPSVEELNVSTQE 237

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E+L+KM  +GF  N    +  T   + +Y   + + R  LPY+IDG+V KV++F+ Q+++
Sbjct: 238 ELLRKMAEIGFVTNPERLKCQTIDEVWNYIETIGAKRQELPYEIDGMVIKVNDFATQEEI 297

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++PRW I++KF  ++A T + D++  +GRTG++TP A ++PV + G  +  A+LHN
Sbjct: 298 GYTVKAPRWAIAYKFPAEEAQTVVRDVEWTVGRTGVVTPTAVMDPVQLAGTTVRRASLHN 357

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D +K            RDIR+ D V++ +AG++IP+V  +I+ +R   +QP+ FP+ CP
Sbjct: 358 IDLMK-----------ERDIRLEDTVVIHKAGDIIPEVTRVILEKRPATSQPYEFPTTCP 406

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C  ++    +        A RC     C AQ  E + HFVSR+A N+ G+G   +  FF
Sbjct: 407 VCHEKLEHLEDE------VAIRCLNPK-CPAQLTEGMSHFVSRNAMNMSGIGPSIIKQFF 459

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       +   AD++ L   Q         +      S  N+ ++I   +  SLER + 
Sbjct: 460 EE----GLVLDVADLYKLTLDQL------LELDKIQQKSAENILEAIENSKANSLERLLT 509

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIRHVG + A+ LA+++ + +   +               L+ +  +GDIIA ++  +
Sbjct: 510 GLGIRHVGTKAAKELAQHFENMKALQEA----------SIEQLLEIDGLGDIIAYSVKTY 559

Query: 616 YQNPRNICAVEALLKEVSPS-----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ P     ++ L                 +     +  K +V TGTL+++ R  A+E +
Sbjct: 560 FEQPSVQELIQELQDRGVNMSYLGKTKADSEASGHILSGKTVVLTGTLEQLTRQDAKEKL 619

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
             LGA V+  +S+KTD++I G + GSKL+KA  LG+++ +E+QFL 
Sbjct: 620 ESLGAKVTGSVSKKTDVVIAGYSAGSKLDKANSLGIEVWSEQQFLD 665


>gi|52079149|ref|YP_077940.1| NAD-dependent DNA ligase LigA [Bacillus licheniformis ATCC 14580]
 gi|52784516|ref|YP_090345.1| NAD-dependent DNA ligase LigA [Bacillus licheniformis ATCC 14580]
 gi|319647076|ref|ZP_08001302.1| DNA ligase [Bacillus sp. BT1B_CT2]
 gi|81386291|sp|Q65MR2|DNLJ_BACLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|52002360|gb|AAU22302.1| DNA ligase [Bacillus licheniformis ATCC 14580]
 gi|52347018|gb|AAU39652.1| LigA [Bacillus licheniformis ATCC 14580]
 gi|317390900|gb|EFV71701.1| DNA ligase [Bacillus sp. BT1B_CT2]
          Length = 667

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 244/715 (34%), Positives = 390/715 (54%), Gaps = 54/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A++ +  L   I+ ++  Y+    P + DSEYD L +   A+    PDL     P
Sbjct: 1   MEKEAAKRRVEQLHALINKYNYEYHTLDDPSVPDSEYDKLMKELIALEEEHPDLK---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  +  KV H  P LSL   +N EDLR F  R+ +         + + +E
Sbjct: 58  DSPSQRVGGAVLDAFQKVQHKTPMLSLGNAFNEEDLRDFDRRVRQAVG-----DVEYNVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +       IEVRGE 
Sbjct: 113 FKIDGLAVSLRYENGVFVRGATRGDGTTGEDITENLKTIRNIPLRM--KRDLSIEVRGEA 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           ++ K  F  LN   I    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+ 
Sbjct: 171 FMPKRSFELLNKARIERDEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q + L  +  LGF  N+  ++ +T   ++    E+K+ R+ LPY+IDG+V KVD   
Sbjct: 231 VETQSQGLDFLDELGFKTNHERKKCSTIEEVIEIVEELKTKRADLPYEIDGIVIKVDSLD 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T LLDI++ +GRTG +TP A LEPV + G  +  
Sbjct: 291 QQEELGFTAKSPRWAIAYKFPAEEVVTTLLDIELSVGRTGAVTPTAILEPVKVAGTTVQR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED IK            +DIR+ D+V+VK+AG++IP+VV+++V +R    + F+ 
Sbjct: 351 ASLHNEDLIK-----------EKDIRLLDKVVVKKAGDIIPEVVNVLVEQRTGKEKEFNM 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 400 PKECPECGSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+ +     +   AD++ L R Q  +      +   G+ S  NL +SI K +  SL
Sbjct: 453 ITQLFRED----LVHNVADLYKLTREQLIN------LERMGEKSTDNLLNSIEKSKKNSL 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +GA+ A++LA ++ +     +               LI V  +GD +A 
Sbjct: 503 ERLLFGLGIRFIGAKAAKTLAMHFETLDKLKKATK----------EELIEVDEIGDKMAD 552

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+V +++    +  ++ L +    ++ +       +   S    K +V TG L ++ R+ 
Sbjct: 553 ALVTYFEKEEILKLLDELEELGVNTVYKGPKKAAAEASDSYFAGKTIVLTGKLSEMSRND 612

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+KTD++I G+  GSKL KA+ L +++ +E + +  L++
Sbjct: 613 AKAEIEALGGKITGSVSKKTDLVIAGEAAGSKLAKAEDLNIEVWDEARLISELKK 667


>gi|229131294|ref|ZP_04260196.1| DNA ligase [Bacillus cereus BDRD-ST196]
 gi|228652180|gb|EEL08115.1| DNA ligase [Bacillus cereus BDRD-ST196]
          Length = 669

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 389/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R++   Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 IQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  D + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGDEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LELERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKTINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLLVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|229148695|ref|ZP_04276945.1| DNA ligase [Bacillus cereus m1550]
 gi|228634703|gb|EEK91282.1| DNA ligase [Bacillus cereus m1550]
          Length = 669

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 247/715 (34%), Positives = 387/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  D  ++ +  E
Sbjct: 58  DSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD++ L + Q         +  FG+ S TNL  +I K +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYALTKEQL------LQLERFGEKSATNLIQAIEKSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKAINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMKYKGIKIADLQNVESYFVGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|149173204|ref|ZP_01851835.1| DNA ligase [Planctomyces maris DSM 8797]
 gi|148848010|gb|EDL62342.1| DNA ligase [Planctomyces maris DSM 8797]
          Length = 671

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 217/712 (30%), Positives = 356/712 (50%), Gaps = 47/712 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             R E+  L +++ +H+  YY  +KP I D EYD L +R + +    P+    + P  P 
Sbjct: 2   SVRTEIEELRKQLEHHNRLYYLDAKPEITDREYDRLMKRLEQLETDHPEY---DSPESPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+GG        V H +P LS++ I+ +E L +F  RI +   +   + +  T E KID
Sbjct: 59  KKVGGAPIEGFQTVAHRLPMLSIDNIFELEGLTEFEARICKLLGQ---DQVELTAEYKID 115

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYIS 194
           G  +++ YE+G+ +    RGDG  G+D++  +R I  +P    + N PE++EVRGE YIS
Sbjct: 116 GVAVSLIYEEGRLIQGLTRGDGQQGDDITHNVRTIIGVPLRLETENPPELLEVRGEAYIS 175

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
            +DF  LN EM   G++P+AN RN  +G L+ L+P     R + FF HG+G  + +  + 
Sbjct: 176 NSDFQVLNVEMQEQGKEPFANSRNTTAGGLKLLDPKLCAKRKIRFFAHGIGAMAGVDYQT 235

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E L  ++ +G P   GV+        + +   M      L +++DG+V KV+ F  ++
Sbjct: 236 HIEYLAAIQEMGIPATPGVKAFPDLKTTMEHVQTMMDDLHALDFEVDGIVLKVNRFDQRE 295

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  ++SPRW++++K+   +A TR   I  Q+G+TG +TPVA LEPV I G  ++ A+L
Sbjct: 296 ELGNTSKSPRWVVAYKWERYEAVTRAESIVFQVGKTGTVTPVANLEPVPIAGTTVSRASL 355

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D ++ L            I++GD V+V++AG++IP VV +  + R    Q   FP+ 
Sbjct: 356 HNRDEMERL-----------GIQIGDWVVVEKAGKIIPHVVRVEEHRRDGSQQELEFPTH 404

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + +++D      +            C A   E L+++ SR A +I    +     
Sbjct: 405 CPECDTLLIQDEGGVYIR-------CPNPNCPAMLRETLRYYASRQAMDI----EGMGIK 453

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       ++  ADI+ L          +  +   G+ S+ NL   I   +   L R 
Sbjct: 454 MIEQLLGQGLLKGLADIYRLHNY----YGDLVALERQGEKSIENLLAGIENSKTQPLWRL 509

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +  L IRHVG+  AR L K + +    AQ               L  V  +G +IA+++ 
Sbjct: 510 LTGLNIRHVGSSNARILEKQFGTIDEIAQ----------QSVEELAAVDEIGPVIAESVY 559

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKAQEYV 670
            F+ +      ++ L           EK     +  ++ K LV TGTL +  R +A+E +
Sbjct: 560 TFFHSDFGTKLIDDLKSAGLNMGSPVEKTTTEAAGILDGKTLVVTGTLTQFTRDEAKELI 619

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            + G   S  +S KTD ++ G+  GSKL KA++L V ++ E +FL LL +  
Sbjct: 620 RKHGGKASGSVSSKTDYLVAGEKAGSKLSKAEELNVPVLTEIEFLELLGESG 671


>gi|148557620|ref|YP_001265202.1| DNA ligase, NAD-dependent [Sphingomonas wittichii RW1]
 gi|190359290|sp|A5VFJ8|DNLJ_SPHWW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148502810|gb|ABQ71064.1| DNA ligase, NAD-dependent [Sphingomonas wittichii RW1]
          Length = 708

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 286/737 (38%), Positives = 414/737 (56%), Gaps = 62/737 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +  QA + L+ L  EI+ H+  Y+    P I D++YDAL R   A+   +P L R+   +
Sbjct: 3   TESQAAERLAFLAAEIARHNALYHGEDAPEISDADYDALMRENAALEAEYPHLVRA---D 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +G   +  L KV H+ P LSL+  +  ED+  F+ R+ R+     +  +  T EP
Sbjct: 60  SPSKLVGAAPSGHLAKVAHAQPMLSLDNAFADEDVVDFVGRVRRYLSLGAEEPVALTAEP 119

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-----NIPEIIEV 187
           KIDG   ++RYEKG  V AA RGDG +GEDV+A +R I  IP  L       + P++ E+
Sbjct: 120 KIDGLSCSLRYEKGVLVLAATRGDGTTGEDVTANVRTIDDIPERLRGGDLLSSPPDVFEI 179

Query: 188 RGEVYISKNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNP-TDITRYLNFFVH 241
           RGEVY++K DF ALN  ++A    P     +ANPRNAA+G LR+ +P    +R L F  H
Sbjct: 180 RGEVYMAKADFAALNARLLAEAEDPAKARQFANPRNAAAGSLRQKDPGVTASRPLRFLAH 239

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           G G+ S + A  Q  ++  +   G PV++   + +     +S+Y  +++ R+ LP+DIDG
Sbjct: 240 GWGEVSALPADTQKGVMDAIAAWGLPVSDDFVRVDGAAQALSHYRAIEAKRADLPFDIDG 299

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKVD    QK+LG  AR+PRW I+HKF  ++A T L DIDIQ+GRTG LTPVARLEPV
Sbjct: 300 VVYKVDRLDWQKRLGFVARAPRWAIAHKFPAEKAQTLLKDIDIQVGRTGKLTPVARLEPV 359

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG ++TNATLHN D I  L           D+  GDRV+V+RAG+VIP++  +    R
Sbjct: 360 TVGGVVVTNATLHNADEIGRL-----------DVHPGDRVVVQRAGDVIPQI--VENLSR 406

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
                P+ FP  CP C S   R+           +RCTGGL C AQ++ERL+HFVSR A 
Sbjct: 407 DETRDPWPFPQTCPECGSAAEREPGE------VDYRCTGGLICPAQRVERLRHFVSRHAL 460

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IEGLG   ++ FF+       ++ PADIF L +    +         + +VS  NL  +
Sbjct: 461 DIEGLGLTHIESFFRD----GLVQSPADIFRLTKDILLTR------ERWAEVSAGNLIAA 510

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL----- 596
           I+ +R+  L+RF+F+LGIRHVG   AR LA+ Y S++     I+  I   +         
Sbjct: 511 IDAKRHPPLDRFLFALGIRHVGEVTARDLARRYRSWEGLKAMIDRTIEARDAAVQAIGET 570

Query: 597 ----------SLIRV---PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
                      L  +   P VG  +A A+V+F+  P N  AV  LL ++ P+   HE   
Sbjct: 571 DEKFAARTAKELAAIVETPGVGPEVALALVDFFAEPHNADAVADLLSQLQPADVIHETRA 630

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
            SE+  K +VFTGTL+ + R +A+     LGA V+  +S KTD+++ G   GSKL+KA  
Sbjct: 631 -SEVSGKTVVFTGTLETMSRDEAKAQAEALGAKVAGSVSAKTDLVVAGPGAGSKLKKASD 689

Query: 704 LGVKIMNEEQFLFLLQQ 720
           LG+ + +E  +  ++  
Sbjct: 690 LGIAVTDEAGWAKIVAD 706


>gi|325838923|ref|ZP_08166729.1| DNA ligase (NAD+) [Turicibacter sp. HGF1]
 gi|325490664|gb|EGC92975.1| DNA ligase (NAD+) [Turicibacter sp. HGF1]
          Length = 662

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 247/708 (34%), Positives = 368/708 (51%), Gaps = 53/708 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L + ++ ++  YY   KP + D EYD L +    +    P+L        P  +
Sbjct: 3   KLRIEELTKLLTQYNHEYYVLDKPSVSDREYDRLMQELMELEEKHPELK---SNTSPTVR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K+ H  P LSL   +N  DLR F TR+ +           +  E KIDG 
Sbjct: 60  VGGKVLEGFNKIEHEKPMLSLSNAFNEGDLRDFDTRVKKV-----SPKATYVCELKIDGL 114

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+ Y  G FV  A RGDG  GED+S  ++ I TIP  ++ N P  +EVRGEVY+SK  
Sbjct: 115 AVTLHYNNGAFVKGATRGDGVIGEDISENLKTIKTIPLHINNNQP--LEVRGEVYMSKAT 172

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
              LN+E  A G + +ANPRNAA+G LR+L+      R L  F + +   +++      E
Sbjct: 173 LEKLNEERAAKGEELFANPRNAAAGSLRQLDSRIAAKRNLAMFCYAVPSAADLGCTTHEE 232

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQK+  LGF VN   +       ++ Y N   + R  LPY+IDG+V KV++   Q +LG
Sbjct: 233 SLQKISELGFNVNPNRQVCENIDEVLEYINRWTNARFDLPYEIDGIVIKVNQLQEQDKLG 292

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T L DI   +GRTG++TP A LEPV + G  ++ ATLHNE
Sbjct: 293 NTVKSPRWAIAYKFPAEEVETILTDIIFTVGRTGMVTPNAVLEPVRVAGTRVSRATLHNE 352

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DY+             RDIR+ DRV++++AGE+IP+VV  +++ R+ D  PF   S CP 
Sbjct: 353 DYVTS-----------RDIRINDRVIIRKAGEIIPEVVKPVIDARNGDEIPFEMISTCPR 401

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR+                 + C A+ +E L HFVSRDA NI+GLG + ++  F+
Sbjct: 402 CSSELVREAGEAD-------YYCLNIDCPARIVESLSHFVSRDAMNIDGLGIKVVEQLFE 454

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I   ADI+ L + Q         +   GD   TNL ++I   +  SLE+ +F 
Sbjct: 455 HK----LIENVADIYRLTKEQL------LPLERMGDKKATNLLNAIEASKENSLEKLLFG 504

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG++ A+ LA  + +  +               +     V  VGD+IA +IV ++
Sbjct: 505 LGIRHVGSKTAKVLATQFENMDSLMDA----------KFDDFKVVAEVGDVIANSIVHYF 554

Query: 617 QNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
               N+  +  L +       +     + N       K +V TGTL+ + R +A   +  
Sbjct: 555 SQTANVELINQLKELGLNMSYKGARLADANTEHVFFGKTVVLTGTLETLSRKEAGIKLES 614

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           LGA VS  +S  TD +I G   GSKL KAQQLGV +++E  FL ++ +
Sbjct: 615 LGAKVSGSISSNTDYLIAGAKSGSKLTKAQQLGVTVLDEATFLSMMNE 662


>gi|259416760|ref|ZP_05740680.1| DNA ligase, NAD-dependent [Silicibacter sp. TrichCH4B]
 gi|259348199|gb|EEW59976.1| DNA ligase, NAD-dependent [Silicibacter sp. TrichCH4B]
          Length = 739

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 296/753 (39%), Positives = 430/753 (57%), Gaps = 59/753 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++  ARKE  +L+ +I   D  Y+Q   P + D+EYD LKRR  A+A AFP+LA     
Sbjct: 1   MNVTDARKEFEALQTKIEAADLDYHQKDAPTLSDAEYDRLKRRYLALAEAFPELAEEGTR 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
              +  +G        K+ H++  +SL   +  +D+  F   + R+     D  + FT E
Sbjct: 61  ---VESVGAPAASGFGKIAHAVRMMSLGNAFEDQDVEDFAAGLRRYLGLSSDAPLAFTAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++RYE G  V AA RGDG  GE+V+   R I  IP+ ++   P ++EVRGEV
Sbjct: 118 PKIDGLSLSLRYENGTLVQAATRGDGAVGENVTENARTIEDIPQQITGA-PAVLEVRGEV 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+S  DF ALN      G K +ANPRNAA+G LR+L+      R L FF +  G+ SE  
Sbjct: 177 YMSHADFEALNARHAETGGKIFANPRNAAAGSLRQLDAEITRARPLRFFAYSWGELSEPL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A+ Q + +++ + LGF  N   R   T   ++++Y+ ++  R+ L YDIDG+VYKV++ +
Sbjct: 237 AETQIDAIERFKSLGFQTNPLTRCCQTIAELLTHYHSIEEQRADLGYDIDGVVYKVNDLA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL+PV +GG +++N
Sbjct: 297 LQERLGFRSTTPRWAIAHKFPAELAWTRLDGIDIQVGRTGALSPVARLQPVTVGGVVVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYI GLD+ G  +R G+DIRVGD V + RAG+VIPKV D+ +N R   A+ ++F
Sbjct: 357 ATLHNEDYIAGLDSKGATIRDGKDIRVGDWVQIYRAGDVIPKVADVDLNRRPDGAEVYAF 416

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S  VR+         A  RC+GGL C AQ +E+LKHFVSR AF+IEGLG +Q
Sbjct: 417 PTHCPRCNSPAVREEG------DAVRRCSGGLICPAQAVEKLKHFVSRAAFDIEGLGAKQ 470

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F         I+ PADIF L+ R  +   +++N  G+GD S T L+ +I+ +R I  
Sbjct: 471 VEQFHSD----GWIKEPADIFELKERYGSGMQQLKNREGWGDKSATALFAAIDDKRRIEF 526

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN------------------------- 585
            R IF LGIRHVG   A+ LA ++ ++   A+  +                         
Sbjct: 527 ARLIFGLGIRHVGEVAAKDLALHFRTWAVLAEAADLARPAALAHRAADEAELLERQVAQA 586

Query: 586 ------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
                              +       W  LI V  +G  +A ++ + + NP    A + 
Sbjct: 587 EERRARISEVRKAAIAACEVAPDAQAAWDDLISVDGLGPTVALSLSDAFANPEERAAFDR 646

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           L+  +   I        S +  K +VFTGTL+K+ R +A+     LGA VS  +S+KTDI
Sbjct: 647 LIAHLEV-IEPDAPTEDSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSKKTDI 705

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ G   GSK  KA +LGV+ M+E+Q+L L+ Q
Sbjct: 706 LVAGPGAGSKATKAAELGVRTMDEDQWLDLIGQ 738


>gi|78188256|ref|YP_378594.1| NAD-dependent DNA ligase [Chlorobium chlorochromatii CaD3]
 gi|123743484|sp|Q3ATX4|DNLJ_CHLCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78170455|gb|ABB27551.1| NAD-dependent DNA ligase [Chlorobium chlorochromatii CaD3]
          Length = 667

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 228/709 (32%), Positives = 367/709 (51%), Gaps = 46/709 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++I  A + ++ L QEI  H+  Y+  +KP + D E+D L     A+   FPDL     P
Sbjct: 1   MTIIDASERIAQLRQEIERHNYLYFNEAKPELSDYEFDKLLEELMALEREFPDLL---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +      VTH  P LSL   ++  ++ +F  R+ +    ++ +      E
Sbjct: 58  DSPSQRVGGTITKEFPVVTHREPMLSLANTYSAGEVAEFYNRVAKLLAAENVHKQEMVAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I++ Y  G  V  A RGDG  G+D++  IR I +IP  L   +   +EVRGE+
Sbjct: 118 LKFDGVAISLLYRDGVLVRGATRGDGVQGDDITPNIRTIASIPLRLHQPLAGEVEVRGEI 177

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           ++ K DF  LND       + +ANPRNA +G L+  +  +   R +NF  + L K  +  
Sbjct: 178 FMRKEDFEQLNDNRPE--EERFANPRNATAGTLKLQDSAEVARRRMNFVAYYL-KGLKDE 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L K+  LGF      R+  T   I ++ NE +  R  LPY+ DG+V K++   
Sbjct: 235 TLDHVSRLHKLEALGFTTGGHYRRCKTIEEINTFINEWEEKRWKLPYETDGVVLKLNNVQ 294

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L +QLG  A+SPRW I++K+  +QA T+L ++  Q+GR G +TPVA L PV + G+ ++ 
Sbjct: 295 LWEQLGATAKSPRWAIAYKYPAQQARTQLCNVVFQVGRIGTITPVAELTPVLLAGSTVSR 354

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           +TLHN D I+ L            + + D V+++++GEVIPKVV  + +ER  DA   + 
Sbjct: 355 STLHNFDEIERLS-----------VMILDYVMIEKSGEVIPKVVRTLPDERPADAHAIAI 403

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + +++  N        +  C     C AQ   RL HF SR+A +I+GLG   
Sbjct: 404 PTHCPECDTPLIKPENE------VSWYCPNEEHCPAQIRGRLLHFASRNAMDIKGLGDAL 457

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++           +    D++ LQ  Q      +E +   G  S  NL  ++++ R  S 
Sbjct: 458 VEQLVAW----GLVHDVGDLYLLQEPQ------LERMERMGKKSAQNLIRALDESRTRSY 507

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +R +++LGIRHVG   AR LA  + +     Q               L  VP +G  +AQ
Sbjct: 508 DRLLYALGIRHVGRATARELAHAFPTLDALMQANE----------ERLAEVPDIGTTVAQ 557

Query: 611 AIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +IV+F+  P +   V+ L +      +     + V+   E   L+FTGTL++  R +A E
Sbjct: 558 SIVDFFAKPSSRQLVDKLREARLQLAASASKIEQVNRNFEGMSLLFTGTLERYTRQQAAE 617

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            V + G  V   +S+KT +++ G + GSKL+KA +LGV++++E++F+ +
Sbjct: 618 LVVERGGRVVESISKKTSLLVAGRDGGSKLDKAHKLGVRVISEDEFMGM 666


>gi|257875591|ref|ZP_05655244.1| DNA ligase [Enterococcus casseliflavus EC20]
 gi|257809757|gb|EEV38577.1| DNA ligase [Enterococcus casseliflavus EC20]
          Length = 676

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 230/711 (32%), Positives = 371/711 (52%), Gaps = 53/711 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           ++ +     L  +++ +   YY   +P + D  YD L      I   +P L      + P
Sbjct: 6   KEIQSRAEELRTQLNQYAYEYYVKDQPSVEDYLYDQLYAELVEIETNYPQLV---TEDSP 62

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG +     KVTH IP  SL  +++ E +  F  R+ +   K    ++ +  E KI
Sbjct: 63  TQRVGGIILPGFEKVTHDIPLYSLNDVFDKEGIVAFDARVQKALGK----AVDYVCELKI 118

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I+++YE+G+FV  A RGDG  GE+++  ++ + +IP  L   I   +EVRGE Y+ 
Sbjct: 119 DGLSISLKYEEGRFVRGATRGDGTVGENITENLKTVKSIPLKLKEPIS--LEVRGECYMP 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253
           K+ FL LN +    G + +ANPRNAA+G LR+L+      R L+ F++ L     I A  
Sbjct: 177 KSSFLKLNQQREEEGAEVFANPRNAAAGSLRQLDTRIAAQRNLSTFLYTLADFGPIEAND 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q+  L ++  LGF  N+  R  +T   + +Y  E    RS LPY+IDG+V KV+ F  Q 
Sbjct: 237 QFSALNELDQLGFRTNHERRVCHTIDEVWAYIEEFHDKRSELPYEIDGVVIKVNNFKDQD 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG   ++PRW  ++KF  ++A T +  I+  +GRTG++TP A + PV + G  ++ A+L
Sbjct: 297 ALGFTVKAPRWAAAYKFPPEEAETVIETIEWTVGRTGVVTPTAVMTPVRVAGTTVSRASL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D+IK            +DIR+GD V++ +AG++IP+V  ++  +R   +QPF  P+ 
Sbjct: 357 HNVDFIKM-----------KDIRIGDSVIIYKAGDIIPEVAKVLEEKRTEASQPFESPTH 405

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S ++            A RC     C AQ  E L HFVSR+A NI+ LG + L+ 
Sbjct: 406 CPECGSELIHLDEE------VALRCINPK-CPAQIKEGLSHFVSRNAMNIDSLGPRVLEQ 458

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F        ++  AD++ L   Q  +      +    + S  NL  +I++ +  S+ER 
Sbjct: 459 MFDKS----LVKDVADLYFLTEEQLLT------LDKIKEKSANNLLRAIHQSKGNSVERL 508

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF LGIRHVGA+ AR LA+++   +  ++               +I +  +G  IA+++V
Sbjct: 509 IFGLGIRHVGAKAARILAEHFGDLRALSKAKE----------EEIISLEAIGATIAESVV 558

Query: 614 EFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ N      ++ L +               ++V S  + K +V TG L    R +A+E
Sbjct: 559 TYFDNQEVHDLLDELERAGVNFAYLGLRNEQLEDVESPFKEKTVVLTGKLSHFTREEAKE 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LG  V+  +S+KTDI++ G+  GSKL KAQ LGV + +E Q +  ++
Sbjct: 619 RIENLGGKVTGSVSKKTDIVVAGEEAGSKLTKAQSLGVTVWDEAQMVAAIE 669


>gi|313898151|ref|ZP_07831690.1| DNA ligase (NAD+) [Clostridium sp. HGF2]
 gi|312957179|gb|EFR38808.1| DNA ligase (NAD+) [Clostridium sp. HGF2]
          Length = 665

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 238/700 (34%), Positives = 361/700 (51%), Gaps = 47/700 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L   +      YY   +P   D EYD   +   A+   FP      DPN    +
Sbjct: 3   QQRILELRSILDRLAYEYYVLDQPSKSDQEYDRYYQELVALEDEFPQY---RDPNSITQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  +  KV H    LSL   +N+EDL  F  R+          +  + +E KIDG 
Sbjct: 60  VGGVVLDAFTKVEHKRTMLSLGNAFNLEDLHAFDERVREVV-----PNARYVVELKIDGL 114

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++ Y  G+FV A  RGDG  GEDV+  ++ IP+IP    + +   +EVRGEVY+    
Sbjct: 115 AMSLIYRDGRFVQALTRGDGVVGEDVTHNVKTIPSIPMH--IPLQGEVEVRGEVYMPNAS 172

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E    G + +ANPRNAA+G +R+L+ +    R L+ F +      E       E
Sbjct: 173 FQMLNEEREKNGEELFANPRNAAAGSIRQLDSSVAAKRKLDAFWYYFVNAQEYDIHSHEE 232

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQKM  +   VN   +       +  +  E+   R+ LPY IDG+V KVD+   Q +LG
Sbjct: 233 ALQKMSEMHLRVNPLRKVCERIDEVWQFIEEITEQRNDLPYAIDGMVIKVDDLDAQNRLG 292

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + PRW I++KF  ++  T+LLDI + +GRTG +TP A LEPV + G  ++ A LHNE
Sbjct: 293 STVKVPRWAIAYKFPAEEVITKLLDIVVTVGRTGRITPNAVLEPVRVAGTTVSAAQLHNE 352

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D IK            +DIR+ D V+V++AG++IP+VV  ++  R+     + FP+ CPI
Sbjct: 353 DMIK-----------EKDIRIHDDVVVRKAGDIIPEVVRPLLERRNDTQAVYHFPTHCPI 401

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR          AAH C     C A+ +E + HF SRDA +I+ LG ++++FF K
Sbjct: 402 CGSELVRFPEE------AAHYCIN-QDCPARVVESMIHFASRDAMDIDTLGDKKVEFFHK 454

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +    DI+ L+  +Q    ++ ++ GF + SV  L D+I   +   LE  I+ 
Sbjct: 455 Q----GFLNTIEDIYCLKEHRQ----ELIDLEGFKEKSVDKLLDAIEDSKQNPLEDLIYG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG + A+ LAK++LS                     L+ +  +G I A++I  F+
Sbjct: 507 LGIRQVGKKAAKVLAKHFLSMDALMAANE----------EELVAIKDIGQITAESITAFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
             P+N+  +  L           E+   S    K +V TGTL ++ R+ A+  +  LGA 
Sbjct: 557 HEPKNMELIAHLKGYGLRMDTEAEQIQESSFSGKTIVLTGTLTQMTRNDAKALLESLGAN 616

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           VS  +S+KTD++I G+  GSKL KA  LGV  M+E+ F+ 
Sbjct: 617 VSGSVSKKTDLVIYGEAAGSKLTKANSLGVMTMDEDTFMK 656


>gi|320102706|ref|YP_004178297.1| NAD-dependent DNA ligase [Isosphaera pallida ATCC 43644]
 gi|319749988|gb|ADV61748.1| DNA ligase, NAD-dependent [Isosphaera pallida ATCC 43644]
          Length = 896

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 225/711 (31%), Positives = 374/711 (52%), Gaps = 47/711 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + +  R  +  L +EI +H+  YY  + P+I D+EYD L +  +A+    PDL     P+
Sbjct: 10  TDDPIRDRIERLRREIEHHNRLYYVEAAPVISDAEYDRLVKDLEALEAERPDLV---TPD 66

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG        V H++P LS++  ++  +LR++ TR+ +     +   I + +E 
Sbjct: 67  SPTQRVGGAPLGEFITVEHTVPMLSIDNAYSEAELREWATRVRKGLTSTE--PIHYVVEL 124

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEVRG 189
           KIDG  I +RYE G+ V A  RGDG  G+D++A  R I  IP VL       PE++EVRG
Sbjct: 125 KIDGVAIGLRYENGRLVRAVTRGDGERGDDITANARTIHDIPLVLDERRTPAPEVLEVRG 184

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSE 248
           EV++++++   LN      G  PYAN RN  +G L++L+P     R L F  HGLG+T  
Sbjct: 185 EVFMTESELARLNQLRREAGEPPYANSRNLTTGTLKQLDPRQVAKRRLRFTTHGLGETRG 244

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +  +  + +L+++R  G P+     + +    +  +    K  R++L +  DG+V KVD+
Sbjct: 245 LELRSYWAILERLRDWGLPIGPHHARYDDIEAVWRHIQTWKIQRASLDFRTDGVVVKVDD 304

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              +++LG R++SPRW ++ K+  +QA T++  + IQ+G+TG LTPVA LEPV + G ++
Sbjct: 305 LGQRERLGTRSKSPRWALAFKYDAEQAITKVRGVTIQVGKTGKLTPVAELEPVLLAGTIV 364

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN + I             +D+R+GD V+V++AGE+IP+VV +   +R    QPF
Sbjct: 365 KRASLHNPEEIAR-----------KDVRIGDTVVVEKAGEIIPQVVRVRTEDRDGTEQPF 413

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP  ++ VV+       +          L C  Q  E L  F  RDA +I+GLG+
Sbjct: 414 VFPTRCPCDRADVVKPPGEVDVRCP-----IPALQCHRQFKEWLAWFAHRDAMDIDGLGE 468

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +D   +       ++ PAD++ L          +  +   G  S  NL  +I   ++ 
Sbjct: 469 KLIDQLVER----GLVKTPADLYRL------DVPTLAALDRMGKKSAENLVKAIAASKSR 518

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL+R +  L IRHVG   A +LA+ + + +                   L  VP +G+I+
Sbjct: 519 SLDRLLVGLTIRHVGVGSAETLARKFGTLEALRAAT----------IDELKAVPDIGEIV 568

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKA 666
           A+++ ++ ++P NI  ++ LL                   +  K +V TGTL  ++R  A
Sbjct: 569 AESVFQYLRDPANIAMIDDLLSVGVSPTAPPVIVARAGLPLAGKTVVLTGTLPTLKRSAA 628

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           ++ +  LG  VS  +S+ T +++ G + GSKL  A +LGV +++E   L L
Sbjct: 629 EDLIKSLGGKVSGSVSKTTSLVVAGADAGSKLVNALKLGVTVIDEATLLAL 679


>gi|262203140|ref|YP_003274348.1| DNA ligase, NAD-dependent [Gordonia bronchialis DSM 43247]
 gi|262086487|gb|ACY22455.1| DNA ligase, NAD-dependent [Gordonia bronchialis DSM 43247]
          Length = 691

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 224/710 (31%), Positives = 355/710 (50%), Gaps = 42/710 (5%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
              R++ S+L  EI  H   YY    P+I D E+DAL RR   +  A P+LA    P+ P
Sbjct: 12  ADLREQWSTLADEIREHQFRYYVKDSPVITDGEFDALLRRLQDLEDAHPELAA---PDSP 68

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +GG  + +   V H    +SL+ +++ +++R ++ R+          S+ F  E KI
Sbjct: 69  TKLVGGGFSTAFTPVDHLERMMSLDNVFDYDEMRTWVERV----NADAGTSVEFLCELKI 124

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGE 190
           DG  + + YEKG  V    RGDG +GEDV+   R I  +P+ L+      IP+++EVRGE
Sbjct: 125 DGVALALVYEKGVLVRGVTRGDGRTGEDVTLNARTIDDVPQRLTASDEYPIPDVLEVRGE 184

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V+    DF ALN  ++A G+ P+ANPRN+A+G LR+ NP     R L    HG+G T   
Sbjct: 185 VFFRVEDFEALNASLVADGKAPFANPRNSAAGSLRQKNPQITARRRLRMICHGIGHTEGW 244

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                ++    +   G PV+    +      I+         R  + ++IDG+V K D+ 
Sbjct: 245 RPASLHDAYLALGAWGLPVSTHTTKVPGADEILEKIGYWGEHRHDVEHEIDGIVVKADDV 304

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           S+Q++LG  +R+PRW I++K+  ++A+T LLDI + +GRTG +TP A L PV + G+ ++
Sbjct: 305 SVQRRLGATSRAPRWAIAYKYPPEEATTELLDIQVGVGRTGRVTPFAVLAPVLVAGSTVS 364

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNE  +K            + + +GD V +++AG+VIP+V+  +V+ R    + F 
Sbjct: 365 RATLHNESEVKR-----------KGVLIGDTVTIRKAGDVIPEVLGPVVDLRDGTERAFV 413

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C + +  +            RC     C AQ  ERL H   R +F+IE LG +
Sbjct: 414 MPDRCPECGAPLRPE-----KDSDVDIRCPNQETCPAQLRERLFHLAGRGSFDIEALGYE 468

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                  ++     I    D+F+L       T       G    +   L  ++   + + 
Sbjct: 469 AATALLNAK----VITNEGDLFSLTADDLARTDLFTTKAGALSANGKRLLANLENAKQVP 524

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R +  L IRHVG   AR+LA  + S                 D   L  V  +G  +A
Sbjct: 525 LWRVLVGLSIRHVGPTAARALATEFGSLNAIEDA----------DVEQLAGVEGLGMTLA 574

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           Q+I +++    +   VE             + ++   +E K +V TG+L+   R  A+E 
Sbjct: 575 QSIHDWFAVDWHREIVEKWRAAGVSMEDERDDSIVRTLEGKTIVVTGSLEDFSRDGAKEA 634

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + Q G   S  +S+KTD +++G++PGSK  KA+QLGV +++E+ F  LL+
Sbjct: 635 ILQRGGKASGSVSKKTDYVVIGESPGSKAAKAEQLGVPVLDEDAFKRLLE 684


>gi|296171259|ref|ZP_06852663.1| DNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894227|gb|EFG73984.1| DNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 693

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 217/725 (29%), Positives = 347/725 (47%), Gaps = 47/725 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M   +  P+      + R+    L  E+  H   YY    PI+ D+E+D +     A+  
Sbjct: 1   MSSAEAEPVSP----EVRRRWQELADEVREHQFRYYIKDAPIVSDAEFDTMFNDLLALED 56

Query: 61  AFPDLARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
            +P+L     P+ P   +GG        +  H    LSL+ +++ ++L  +  R+     
Sbjct: 57  RYPEL---RVPDSPTQLVGGAGFATDFTEAAHLERMLSLDDVFDRDELVAWNNRVENEVG 113

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV--- 176
           +       +  E KIDG  +++ Y  G+   AA RGDG  GEDV+   R I  +P     
Sbjct: 114 RDPY----YLCELKIDGVALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLTR 169

Query: 177 -LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITR 234
              L IP ++EVRGEV+    DF ALN  ++  G+ P+ANPRN+A+G LR+ NP     R
Sbjct: 170 AADLPIPAVLEVRGEVFFMLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARR 229

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            L    HG+G+T        ++    ++  G PV     +      +          R  
Sbjct: 230 KLRMICHGIGRTDGFAPASLHDAYTALKAWGLPVAEQTARVRGLAAVEDRIGYWGEHRYE 289

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + ++IDG+V KVD+F+LQ++LG  +R+PRW +++K+  ++A T+LLDI + +GRTG +TP
Sbjct: 290 IDHEIDGVVVKVDDFALQRRLGTTSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTP 349

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A + PV + G+ +  ATLHN   +K            + + +GD V++++AG+VIP+V+
Sbjct: 350 FAFMTPVKVAGSTVGLATLHNAAEVKR-----------KGVLIGDTVMIRKAGDVIPEVL 398

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +V+ R    + F  P+ CP C + +         +  A  RC    +C AQ  ER+ H
Sbjct: 399 GPVVDLRDGSEREFVMPTTCPECGTTLA-----PAKEGDADIRCPNARSCPAQLRERVFH 453

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
              R A +IEGLG +      K    A  I    D+FTL       T       G    +
Sbjct: 454 VAGRGALDIEGLGYEAATALLK----AGVIADEGDLFTLTEDDLLRTDLFRTKAGTLSAN 509

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
              L D+++K + ++L R + +L IRHVG   AR+LA  + S                  
Sbjct: 510 GRRLLDNLDKAKTVALWRVLVALSIRHVGPTAARALATEFGSLDAIMAA----------S 559

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
              L  V  VG  IA A+ E++    +   V+             + +V   +E   +V 
Sbjct: 560 TERLAAVEGVGPTIAAALTEWFTVDWHRAIVDKWRAAGVRMADERDASVPRTLEGLTVVV 619

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG+L    R  A+E +   G   +  +S+KTD ++ GD PGSK +KA +LGV +++E+ F
Sbjct: 620 TGSLAGFSRDDAKEAIIARGGKAAGSVSKKTDYVVAGDAPGSKYDKAVKLGVPVLDEDGF 679

Query: 715 LFLLQ 719
             LL 
Sbjct: 680 RELLA 684


>gi|300867541|ref|ZP_07112191.1| DNA ligase [Oscillatoria sp. PCC 6506]
 gi|300334429|emb|CBN57361.1| DNA ligase [Oscillatoria sp. PCC 6506]
          Length = 690

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 227/730 (31%), Positives = 354/730 (48%), Gaps = 65/730 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + + ++ +  L +++      YY    PI+ D  YD L R    +    P+L   E    
Sbjct: 2   MPEVQQRVQQLRKQLQEASYAYYVLDTPIMPDEVYDRLYRELQELETQHPELISLE---S 58

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ-------------- 119
           P  ++G +       V H+IP  SLE  +NIE+  K+  R  R                 
Sbjct: 59  PTQRVGEKPATHFSSVRHNIPLYSLENAFNIEEFIKWEERWQRGIGTNEGELATGNTLES 118

Query: 120 -KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
            +K      +  E KIDG+ + + YE G  V  A RGDG +GE+++  ++ I +IP  L 
Sbjct: 119 SQKTSPVSKYVCELKIDGSALALTYENGILVRGATRGDGVTGEEITQNVKTIRSIPLQLQ 178

Query: 179 -LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYL 236
             + P ++EVRGE ++S   F  +N E    G   +ANPRNAA+G LR+L+      R L
Sbjct: 179 LEDCPPLVEVRGEAFLSLAVFEEINQEREKSGDSLFANPRNAAAGTLRQLDSKIVAKRRL 238

Query: 237 NFFVHGL---GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           +FF + L   GK     A  Q + L+ ++ +GF VN   +       +  YY      R 
Sbjct: 239 DFFAYTLQIPGKEDIEVADTQCKSLELLQQMGFKVNPNRQLCLALDEVREYYQYWDIERR 298

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            LPY  DG+V K+++  LQKQLG   + PRW ++ K+  ++A T +  I + +GRTG LT
Sbjct: 299 NLPYMTDGVVVKINDLRLQKQLGFTQKFPRWAVALKYPAEEAPTLVESIAVSVGRTGALT 358

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L+PV + G  ++ ATLHN D I  L           +I +GD V+V++AGE+IP+V
Sbjct: 359 PVAELKPVQLAGTTVSRATLHNSDRILSL-----------NIHIGDTVIVRKAGEIIPEV 407

Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
           V ++   R   AQ F  PS CP C   VVR+         A  RC    +C A     L 
Sbjct: 408 VRVLPELRPEGAQSFQMPSCCPECGQPVVREKGE------AVTRCINT-SCPAILRGALI 460

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533
           HF SRDA +I G+G++ +     S      +   ADI+ L   +  +      +   G  
Sbjct: 461 HFCSRDAVDINGIGEKLVQQLVDSN----LVHSVADIYDLTVERLMN------LERMGKK 510

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
               L  +I   +     R ++ LGIRHVG+  A  L + +   +  A            
Sbjct: 511 LADKLVGAIANSKTQPWSRILYGLGIRHVGSVNAVLLTERFPDVEQLAAASAA------- 563

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSE---IEN 649
              ++  V  +G  IAQ++ +++Q P N   +E L    +          V  +   +  
Sbjct: 564 ---TIEGVYGIGPEIAQSVYQWFQVPANQNLIERLKVAGLQLKSEATSNKVEGKNLLLAG 620

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K  V TGTL  ++R +A+E + + G  V+  +S KT+ ++VG++ GSKLEKAQ+LG+  +
Sbjct: 621 KVFVITGTLPTLKRDEAKELIQKAGGKVTNSVSAKTNYLVVGEDAGSKLEKAQELGIVQL 680

Query: 710 NEEQFLFLLQ 719
           +E Q L +++
Sbjct: 681 SEAQLLEMIK 690


>gi|229015686|ref|ZP_04172669.1| DNA ligase [Bacillus cereus AH1273]
 gi|229021878|ref|ZP_04178448.1| DNA ligase [Bacillus cereus AH1272]
 gi|228739424|gb|EEL89850.1| DNA ligase [Bacillus cereus AH1272]
 gi|228745603|gb|EEL95622.1| DNA ligase [Bacillus cereus AH1273]
          Length = 669

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 248/715 (34%), Positives = 390/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMGE--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R++   Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTILDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 LQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTVVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC    AC AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIESSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKTINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLLVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|86157121|ref|YP_463906.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123723230|sp|Q2INT9|DNLJ_ANADE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|85773632|gb|ABC80469.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 687

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 232/707 (32%), Positives = 364/707 (51%), Gaps = 42/707 (5%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L + I   D  YY   +P++ D+EYD L     AI    P+L  +   + P  ++ G  +
Sbjct: 13  LRERIRAADHAYYVLDQPVLADAEYDRLMHELQAIEAEHPELVTA---DSPTQRVSGAPS 69

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               +V H  P LSL  + + ++L +F  R+ R     +  ++ + +EPK+DG  + + Y
Sbjct: 70  ERFERVVHREPMLSLGNVQSDDELHEFDARVRRLLGLPEGEAVGYVVEPKLDGLAVELVY 129

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRA------IPTIPRVLSLNIPEIIEVRGEVYISKND 197
             G F   + RGDG +GEDV+A +R          +P  L    P  +EVRGEV + K  
Sbjct: 130 RDGAFTGGSTRGDGVNGEDVTANLRVVGGLGANRGVPHALEGTPPPRVEVRGEVLLFKEH 189

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F A+N +++  G +P+ANPRNAA+G LR+L+      R L+F  +          +  +E
Sbjct: 190 FEAMNRQLVRAGDEPFANPRNAAAGTLRQLDWRVTARRPLSFVAYEALVPGGDPWRTHWE 249

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ +   GF  N   R+      +++Y + M   R  LPYD DG+V KVD+   +++LG
Sbjct: 250 KLEALAAWGFETNPENRRCRGLGEVLAYRDRMAERRFELPYDTDGIVVKVDDLDWRRRLG 309

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++ PRW ++ K+  ++ +TR+  I   +GRTG+LTPV   +PV + GA++  ATLHNE
Sbjct: 310 AASKFPRWAVAFKYPPQEEATRIRRIWASVGRTGVLTPVVDFDPVRLSGAMVARATLHNE 369

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D ++            +DI  GD VLV+RAGEVIP+VV  +   R  + +PF FP+ CP+
Sbjct: 370 DEMRR-----------KDILEGDWVLVRRAGEVIPEVVKPLPERRTGEERPFRFPAECPV 418

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +RVVR+   K       +RCTG  AC AQ + R+ HF  R A +IEGLG++      +
Sbjct: 419 CGARVVREEGEK------VYRCTGA-ACPAQLVGRICHFAQRRALDIEGLGEKLAAGLVE 471

Query: 497 S---EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               +D A    +P +++     +              + S  N+  ++ + R+ +L RF
Sbjct: 472 RGQVKDFADLYAVPFEVWQQLFSRPRKEQDAGAARELPEKSAQNMVAALERSRSTTLRRF 531

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGI  VG   A +LA+++                   D  +L  V  VG   A  I 
Sbjct: 532 LFALGIPQVGEATAATLARHFGDLARILDA----------DEEALKGVRDVGPETASEIR 581

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            + Q P+N   VE LL           +        K +V TG L  + R  A+  V + 
Sbjct: 582 AWTQEPQNRRVVERLLAAGVRPEPEVVEAR-GPFAGKTVVLTGGLSAMSRDDAKAEVERR 640

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  VS  +SRKTD+++ G+  GSKLEKA+ LGV+++ EE+F+ LL++
Sbjct: 641 GGKVSGSVSRKTDLVVAGEEAGSKLEKARSLGVRVVGEEEFVRLLKE 687


>gi|257865964|ref|ZP_05645617.1| DNA ligase [Enterococcus casseliflavus EC30]
 gi|257872297|ref|ZP_05651950.1| DNA ligase [Enterococcus casseliflavus EC10]
 gi|257799898|gb|EEV28950.1| DNA ligase [Enterococcus casseliflavus EC30]
 gi|257806461|gb|EEV35283.1| DNA ligase [Enterococcus casseliflavus EC10]
          Length = 676

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 230/711 (32%), Positives = 370/711 (52%), Gaps = 53/711 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           ++ +     L  +++ +   YY   +P + D  YD L      I   +P L      + P
Sbjct: 6   KEIQSRAEELRTQLNQYAYEYYVKDQPSVEDYLYDQLYAELVEIETNYPQLV---TEDSP 62

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG +     KVTH IP  SL  +++ E +  F  R+ +   K    ++ +  E KI
Sbjct: 63  TQRVGGIILPGFEKVTHDIPLYSLNDVFDKEGIVAFDARVQKALGK----AVDYVCELKI 118

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I+++YE+G+FV  A RGDG  GE+++  ++ + +IP  L   I   +EVRGE Y+ 
Sbjct: 119 DGLSISLKYEEGRFVRGATRGDGTVGENITENLKTVKSIPLKLKEPIS--LEVRGECYMP 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253
           K  FL LN +    G + +ANPRNAA+G LR+L+      R L+ F++ L     I A  
Sbjct: 177 KASFLKLNQQREEEGAEVFANPRNAAAGSLRQLDTRIAAQRNLSTFLYTLADFGPIEAND 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q+  L ++  LGF  N+  R  +T   + +Y  E    RS LPY+IDG+V KV+ F  Q 
Sbjct: 237 QFSALNELDQLGFRTNHERRVCHTIDEVWAYIEEFHDKRSELPYEIDGVVIKVNNFKDQD 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG   ++PRW  ++KF  ++A T +  I+  +GRTG++TP A + PV + G  ++ A+L
Sbjct: 297 ALGFTVKAPRWAAAYKFPPEEAETVIETIEWTVGRTGVVTPTAVMTPVRVAGTTVSRASL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D+IK            +DIR+GD V++ +AG++IP+V  ++  +R   +Q F  P+ 
Sbjct: 357 HNVDFIKM-----------KDIRIGDSVIIYKAGDIIPEVAKVLEEKRTEASQSFESPTH 405

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S ++            A RC     C AQ  E L HFVSR+A NI+GLG + L+ 
Sbjct: 406 CPECGSELIHLDEE------VALRCINPK-CPAQIKEGLSHFVSRNAMNIDGLGPRVLEQ 458

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F        ++  AD++ L   Q  +      +    + S  NL  +I++ +  S+ER 
Sbjct: 459 MFDKS----LVKDVADLYFLTEEQLLT------LDKIKEKSANNLLRAIHQSKGNSVERL 508

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF LGIRHVGA+ AR LA+++   +  ++               +I +  +G  IA+++V
Sbjct: 509 IFGLGIRHVGAKAARILAEHFGDLRALSKAKE----------EEIISLEAIGATIAESVV 558

Query: 614 EFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            ++ N      ++ L +               ++V S  + K +V TG L    R +A+E
Sbjct: 559 TYFDNQEVHDLLDELERAGVNFAYLGLRNEQLEDVESPFKEKTVVLTGKLSHFTREEAKE 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  LG  V+  +S+KTDI++ G+  GSKL KAQ LGV + +E Q +  ++
Sbjct: 619 RIENLGGKVTGSVSKKTDIVVAGEEAGSKLTKAQSLGVTVWDEAQMVAAIE 669


>gi|163938297|ref|YP_001643181.1| NAD-dependent DNA ligase LigA [Bacillus weihenstephanensis KBAB4]
 gi|229165272|ref|ZP_04293059.1| DNA ligase [Bacillus cereus AH621]
 gi|254781256|sp|A9VRG3|DNLJ_BACWK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|163860494|gb|ABY41553.1| DNA ligase, NAD-dependent [Bacillus weihenstephanensis KBAB4]
 gi|228618097|gb|EEK75135.1| DNA ligase [Bacillus cereus AH621]
          Length = 669

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 246/715 (34%), Positives = 389/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R++   Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 IQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LELERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKTINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLLVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|150007448|ref|YP_001302191.1| DNA ligase [Parabacteroides distasonis ATCC 8503]
 gi|298375424|ref|ZP_06985381.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_19]
 gi|166216223|sp|A6LA55|DNLJ_PARD8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149935872|gb|ABR42569.1| DNA ligase [Parabacteroides distasonis ATCC 8503]
 gi|298267924|gb|EFI09580.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_19]
          Length = 664

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 228/708 (32%), Positives = 353/708 (49%), Gaps = 50/708 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              ++ +L  E+  H+  YY  S P I D E+D + +    +  A P+ A   DP+ P  
Sbjct: 2   VEAKIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFA---DPDSPTR 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G +++    +V H  P LSL   ++ +++R F  R  R      +       E K DG
Sbjct: 59  RVGSDLSKEFEQVVHKYPMLSLGNTYSEDEIRDFYDRTVRSL----NEPFEIVAELKYDG 114

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195
           T I++ YEKG+   A  RGDG  G+DV+A I+ I ++P  L   + PE  E+RGEV +  
Sbjct: 115 TSISLTYEKGRLTRAVTRGDGTRGDDVTANIKTIRSVPLRLRGSDFPEEFEIRGEVLLPW 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
            +F  LN E        +ANPRNAASG L++ NP  +                + A+G Y
Sbjct: 175 AEFDRLNKEREEQEEPLFANPRNAASGTLKQQNPAIVASRKLDAYFYYLLGENLPAEGHY 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ  R  GF + + +R+  +   I  Y       R  LP   DG+V KV+    Q+ L
Sbjct: 235 ENLQAARAWGFKIPDVIRKCQSLQDIFDYIAYWDVERKNLPVATDGIVLKVNSLRQQRNL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  ++SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA LEPV + G ++  A+LHN
Sbjct: 295 GFTSKSPRWAIAYKFQAERAETRLNSVSFQVGRTGTVTPVANLEPVLLAGTVVKRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434
            D I+GL           D+ +GD+V V++ GE+IPK+V + V  R         F   C
Sbjct: 355 ADIIEGL-----------DLHIGDQVYVEKGGEIIPKIVGVNVEARSMLMGDKVRFIRVC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +VR          AAH C     C  Q   R++HFV+R A NI    +      
Sbjct: 404 PECGTPLVRPEGE------AAHYCPNESGCPPQIKGRIEHFVTRKAMNINIGPET----- 452

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +    A  ++  AD++TL          +  +  + + S  NL  S+ + + +  ER +
Sbjct: 453 VEDLYNAGYVKDSADLYTLTVAD------LLRLERWAEKSAQNLMSSLEESKQVPFERVL 506

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIR VG  +A+ L   + S +   Q               L+ V  +G+ IAQ+++ 
Sbjct: 507 FGLGIRFVGETVAKRLVSAFHSIEALEQA----------SLEDLVAVDEIGERIAQSVLS 556

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++ + +N   V  L ++        E+  N S +++   +V +GT  K  R + +  + Q
Sbjct: 557 YFSDEKNRTLVNRLKEQGLRMAVSEEQLANRSEKLKGLTIVISGTFSKHSRDEYKAMIEQ 616

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            G   S  +S KTD I+ G+N G +KLEKA +LGVKI+NE+ FL +L+
Sbjct: 617 HGGKNSGSVSGKTDYILAGENMGPAKLEKAAKLGVKIINEDAFLNMLE 664


>gi|116873191|ref|YP_849972.1| NAD-dependent DNA ligase LigA [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123466434|sp|A0AJL1|DNLJ_LISW6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116742069|emb|CAK21193.1| DNA ligase [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 670

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 247/711 (34%), Positives = 369/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P+ P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPDSPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N +DL  F  RI      K  + I +  E KIDG 
Sbjct: 61  VGGEVLEGFTKVAHDTPMLSLANAFNRDDLADFDRRIRD----KVGDDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTVGEDITANLRTIRSIPMKLQKDFS--IEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+     +R L+ F++ +    E+      E
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVTTHSE 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N    + +Y +E    R+ L YDIDG+V K+++   Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNNLEEVYAYIDEWTEKRAELAYDIDGIVLKLNDLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D           +   +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CGSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 E----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKMA----------DKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +          K             K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|326317205|ref|YP_004234877.1| DNA ligase, NAD-dependent [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374041|gb|ADX46310.1| DNA ligase, NAD-dependent [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 732

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 262/756 (34%), Positives = 384/756 (50%), Gaps = 89/756 (11%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
             E+  + +++L  ++      YY    P + D+EYD + +   A+  A P+L     P+
Sbjct: 15  DPEELGRRVAALRAQLHQWAHQYYVLDAPTVPDAEYDRVFQALQALEAAHPELV---TPD 71

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKDD-NSIFFT 129
            P  ++ G +   L  V H++P LS+    + E      F  R+ R  +   D + + + 
Sbjct: 72  SPTQRVIGAVMEGLTPVRHTVPMLSIRTETDTEASGAETFDARVRRELKLAPDASPVEYV 131

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI----PRVLSLNIPEII 185
            EPK DG  +++RYE G+ V AA RGDG  GEDV+  IR I  I    P      +P ++
Sbjct: 132 AEPKFDGLAMSLRYENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLPTGGDKGVPPVL 191

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244
           EVRGEVY+ + DF  LN+     G K + NPRNAA+G +R+L+      R L+FF +GLG
Sbjct: 192 EVRGEVYMRRADFDRLNERQREAGGKTFVNPRNAAAGAVRQLDSGIAAQRPLSFFAYGLG 251

Query: 245 KTSE-----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
             +            ++MLQ+++  GFPV   VR A     +V+++ E+   R  LPYDI
Sbjct: 252 DITPAAEGGPDFATHFDMLQQLKAWGFPVAAQVRTALGAAELVAFHREVGESRDQLPYDI 311

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKV+  +LQ+QLG   R PRW ++HK+  ++  TR+  ID+Q+GRTG LTPVARL 
Sbjct: 312 DGVVYKVNSLALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKLTPVARLA 371

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV------ 413
           PV +GG  +TNATLHN   I+            + +RVGD+V+V+RAG+VIP+V      
Sbjct: 372 PVFVGGVTVTNATLHNLFEIRK-----------KGVRVGDQVIVRRAGDVIPEVVGTVPA 420

Query: 414 -----------------------------VDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                                               R P    F  P  CPIC S VVR+
Sbjct: 421 ALLPVAGALQGSDALVDAASGADGTAPGADAARAAPRSPYVPNFRMPRQCPICGSAVVRE 480

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
                    A HRCTGGL C AQ+ E L HF  R A +IEGLG++ +D   +       I
Sbjct: 481 KGE------ANHRCTGGLFCPAQRKEALLHFAQRRAMDIEGLGEKLVDQLVE----GQVI 530

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           R   D++ L        T + ++    + S  N+  ++ K ++ +L RF+F LGIRHVG 
Sbjct: 531 RTLPDLYRL------GLTALSSLDRMAEKSAQNVLAALEKSKHTTLPRFLFGLGIRHVGE 584

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             A+ LA+++                       L+ V  VG I+A+AI  F+  P N   
Sbjct: 585 ATAKDLARHFGGLDAIIGA----------SVEQLLEVNDVGPIVAEAIHTFFAQPHNREV 634

Query: 625 VEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           VE L    V+   G   +  +  +  K  V TGTL  + R  A+E +   GA V+  +S+
Sbjct: 635 VEQLRACGVTWKEGPPAERATLPLAGKTFVLTGTLPTLSREDAKERLEAAGAKVAGSVSK 694

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           KT  ++ G+  GSKL KAQ+LGV +++E   L LLQ
Sbjct: 695 KTHYVVAGEEAGSKLTKAQELGVPVLDEAGMLALLQ 730


>gi|255013963|ref|ZP_05286089.1| DNA ligase [Bacteroides sp. 2_1_7]
 gi|301310547|ref|ZP_07216486.1| DNA ligase, NAD-dependent [Bacteroides sp. 20_3]
 gi|300832121|gb|EFK62752.1| DNA ligase, NAD-dependent [Bacteroides sp. 20_3]
          Length = 664

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 228/708 (32%), Positives = 353/708 (49%), Gaps = 50/708 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              ++ +L  E+  H+  YY  S P I D E+D + +    +  A P+ A   DP+ P  
Sbjct: 2   VEAKIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFA---DPDSPTR 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G +++    +V H  P LSL   ++ +++R F  R  R      +       E K DG
Sbjct: 59  RVGSDLSKEFEQVVHKYPMLSLGNTYSEDEIRDFYDRTVRSL----NEPFEIVAELKYDG 114

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195
           T I++ YEKG+   A  RGDG  G+DV+A I+ I ++P  L   + PE  E+RGEV +  
Sbjct: 115 TSISLTYEKGRLTRAVTRGDGTRGDDVTANIKTIRSVPLRLRGSDFPEEFEIRGEVLLPW 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
            +F  LN E        +ANPRNAASG L++ NP  +                + A+G Y
Sbjct: 175 AEFDRLNKEREEQEEPLFANPRNAASGTLKQQNPAIVASRKLDAYFYYLLGENLPAEGHY 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ  R  GF + + +R+  +   I  Y       R  LP   DG+V KV+    Q+ L
Sbjct: 235 ENLQAARAWGFKIPDVIRKCQSLQDIFDYIAYWDVERKNLPVATDGIVLKVNSLRQQRNL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  ++SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA LEPV + G ++  A+LHN
Sbjct: 295 GFTSKSPRWAIAYKFQAERAETRLNSVSFQVGRTGTVTPVANLEPVLLAGTVVKRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434
            D I+GL           D+ +GD+V V++ GE+IPK+V + V  R         F   C
Sbjct: 355 ADIIEGL-----------DLHIGDQVYVEKGGEIIPKIVGVNVEARSMLMGDKVRFIRVC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +VR          AAH C     C  Q   R++HFV+R A NI    +      
Sbjct: 404 PECGTPLVRPEGE------AAHYCPNESGCPPQIKGRIEHFVTRKAMNINIGPET----- 452

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +    A  ++  AD++TL          +  +  + + S  NL  S+ + + +  ER +
Sbjct: 453 VEDLYNAGYVKDSADLYTLTVAD------LLRLERWAEKSARNLMSSLEESKQVPFERVL 506

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIR VG  +A+ L   + S +   Q               L+ V  +G+ IAQ+++ 
Sbjct: 507 FGLGIRFVGETVAKRLVSAFHSIEALEQA----------SLEDLVAVDEIGERIAQSVLS 556

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++ + +N   V  L ++        E+  N S +++   +V +GT  K  R + +  + Q
Sbjct: 557 YFSDEKNRTLVNRLKEQGLRMAVSEEQLANRSEKLKGLTIVISGTFSKHSRDEYKAMIEQ 616

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            G   S  +S KTD I+ G+N G +KLEKA +LGVKI+NE+ FL +L+
Sbjct: 617 HGGKNSGSVSGKTDYILAGENMGPAKLEKAAKLGVKIINEDAFLNMLE 664


>gi|325675870|ref|ZP_08155554.1| DNA ligase [Rhodococcus equi ATCC 33707]
 gi|325553841|gb|EGD23519.1| DNA ligase [Rhodococcus equi ATCC 33707]
          Length = 711

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 226/716 (31%), Positives = 352/716 (49%), Gaps = 44/716 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            + R+    L + +  H   YY    PI+ D E+D L    +A+    PDL     P+ P
Sbjct: 23  AEDRERWQELAEVVRNHQFRYYVLDSPIVSDGEFDQLFGELNALEERHPDL---RTPDSP 79

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY------RFWQKKDDNSIFF 128
              +GG        V H    LSL+ +++ ++LR +I RI       R         + +
Sbjct: 80  TQLVGGGFATEFKAVDHLERMLSLDNVFDYDELRTWIGRIEAEVSDGRSAGSAAHPDLHY 139

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEI 184
             E KIDG  + + YE G+ V AA RGDG +GEDV+   R I  IP  L+      IP +
Sbjct: 140 LCEVKIDGVALNLVYENGRLVRAATRGDGRTGEDVTLNARTISDIPETLTPSDEYPIPAL 199

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +EVRGEV+    DF ALN  ++A G+ P+ANPRN+A+G LR+ NP     R L    HGL
Sbjct: 200 LEVRGEVFFRLEDFAALNASLVADGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGL 259

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G+T      GQY+    +   G PV+    +      +V         R  + ++IDGLV
Sbjct: 260 GRTEGFDPVGQYDAYTALAAWGLPVSTHTSRVVGADAVVEKVKYWDEHRHDVEHEIDGLV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVDE SL ++LG  +R+PRW +++K+  ++A+T+L+DI + +GRTG +TP A +EPV +
Sbjct: 320 VKVDEMSLHRRLGATSRAPRWAVAYKYPPEEATTKLVDIRVSVGRTGRVTPFAYMEPVLV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ +  ATLHN   +K            + + +GD V++++AGEVIP+V+  +V+ R  
Sbjct: 380 AGSTVALATLHNASEVKR-----------KGVLIGDTVVIRKAGEVIPEVLGPVVDVRDG 428

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             + F  P+ CP C + +         +  A  RC    +C AQ  ER+ H   R AF+I
Sbjct: 429 SEREFVMPTECPECGTTLA-----PAKEGDADIRCPNQRSCPAQLRERVFHVAGRGAFDI 483

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           E LG +      +    A  I    D+F+L               G    +   L D++ 
Sbjct: 484 EVLGYEAATALLQ----AGVISDEGDLFSLTEDDLLEAPLFRTKAGKLSANGRRLLDNLG 539

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +   L R + +L IRHVG   AR+LA  + S +                   L  V  
Sbjct: 540 SAKQQPLWRVLVALSIRHVGPTAARALASEFGSLERIENA----------GVEELAAVDG 589

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           VG  IA A+V +++   +   V              ++++   +E   +V TG+L+   R
Sbjct: 590 VGGTIAAAVVAWFEVDWHRDIVAKWRAAGVTMEDERDESIVRNLEGLSIVVTGSLEGFSR 649

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+E +   G   +  +S+KT  +++G+ PGSK  KA++LGV I++E+ F  LL+
Sbjct: 650 DEAKEAILVRGGKAAGSVSKKTAFVVIGEAPGSKAAKAEELGVPILDEDGFRRLLE 705


>gi|329848744|ref|ZP_08263772.1| DNA ligase, NAD-dependent [Asticcacaulis biprosthecum C19]
 gi|328843807|gb|EGF93376.1| DNA ligase, NAD-dependent [Asticcacaulis biprosthecum C19]
          Length = 714

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 267/733 (36%), Positives = 399/733 (54%), Gaps = 44/733 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++++ AR   S L  ++ YH   YY+   P + D++YDAL+++   +   FPDL  SE  
Sbjct: 1   MTLDDARALHSELAAQVQYHRGLYYREETPELTDADYDALEKQLRDLEAQFPDLKTSE-- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P   +G  ++     V H +P LSL+  +  ED+  F  RI RF +   +  + F  E
Sbjct: 59  -SPTQTVGAVISEKFSPVVHGVPMLSLDNAFADEDVTDFEDRIRRFLKLPAEEPVVFAAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PKIDG   ++ Y  G+ V  A RGDG +GEDV+  IR I  IP  LS    PE IE+RGE
Sbjct: 118 PKIDGLSCSLLYVNGELVRGATRGDGRTGEDVTENIRTIADIPHRLSGTGHPERIEIRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           +Y+    F  +N +  A G + YANPRN ASG LR+L+      R L FF +  G+ S+ 
Sbjct: 178 IYVPLQAFADMNAKAQAEGGRTYANPRNFASGSLRQLDTAVTAARPLRFFAYTWGEVSDD 237

Query: 250 FAK-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q E L K R  G  VN    Q +   G++  YN +   RS L YDIDG+VYKVD 
Sbjct: 238 GFAATQTEALAKFREWGLQVNPQSAQVDGAAGLLDVYNRIGRDRSGLGYDIDGVVYKVDR 297

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q++LG  +RSPRW I+HKF  +QA TRL  IDIQ+GR G +TPVARL+PVN+GG ++
Sbjct: 298 LDWQRRLGFVSRSPRWAIAHKFPAQQALTRLAAIDIQVGRMGTMTPVARLQPVNVGGVVV 357

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TN TLHN D I+            +DIR+GD V V+RAG+VIP++V I  +ER   A P+
Sbjct: 358 TNVTLHNADEIER-----------KDIRIGDMVRVQRAGDVIPQIVGIEPDERPDTAVPY 406

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP      V       G    A +C+G  AC  Q+ E LK+ VSR   +IEGLG+
Sbjct: 407 EFPTVCPCPLKTEVVREQNAAGTEGVARKCSGDQACPHQRTEYLKYVVSRRVLDIEGLGE 466

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQR-----------RQQTSTTKIENILGFGDVSV-- 535
             ++ F +       +  PADI+ L              ++  +   +   G        
Sbjct: 467 TYIEIFNR----GGILAEPADIYRLHEKAEAAKVIVLEERKRQSAARQEKSGQAVKKQVA 522

Query: 536 ---------TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
                      L+ +I+ RR++ LERFI +LGI+HVG   A+ LA+ ++S + F   +  
Sbjct: 523 DTDRAFTDLDKLFAAIDIRRDLPLERFIAALGIKHVGDTTAKLLARAFVSERAFHDTLVK 582

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
               + + + S+  +  VG +IA+++  ++ +P      E  +++V         +  S 
Sbjct: 583 AAEGDEEAFNSVKDLNQVGPVIARSVTSYFAHPYQRGIYERFIEQVRVQDAEAVAST-SP 641

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K +VFTGTL+K+ R +A+    +LGA VS  +S+KTD+++ G   GSKL+ A +LG+
Sbjct: 642 VSGKTVVFTGTLEKLTRDEAKAQAERLGAKVSGSVSKKTDLVVAGPGAGSKLKTAAELGI 701

Query: 707 KIMNEEQFLFLLQ 719
           +++ E+++L L+ 
Sbjct: 702 QVLTEDEWLSLIA 714


>gi|325570045|ref|ZP_08145970.1| NAD-dependent DNA ligase LigA [Enterococcus casseliflavus ATCC
           12755]
 gi|325156873|gb|EGC69044.1| NAD-dependent DNA ligase LigA [Enterococcus casseliflavus ATCC
           12755]
          Length = 687

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 235/725 (32%), Positives = 378/725 (52%), Gaps = 54/725 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           +K ++ I ++  S E  +     L  +++ +   YY   +P + D  YD L      I  
Sbjct: 4   LKNKEDIRMDVPSKE-IQSRAEELRTQLNQYAYEYYVKDQPSVEDYLYDQLYAELVEIET 62

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            +P L      + P  ++GG +     KVTH IP  SL  +++ E +  F  R+ +   K
Sbjct: 63  NYPQLV---TEDSPTQRVGGIILPGFEKVTHDIPLYSLNDVFDKEGIVAFDARVQKALGK 119

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
               ++ +  E KIDG  I+++YE+G+FV  A RGDG  GE+++  ++ + +IP  L   
Sbjct: 120 ----AVDYVCELKIDGLSISLKYEEGRFVRGATRGDGTVGENITENLKTVKSIPLKLKEP 175

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFF 239
           I   +EVRGE Y+ K  FL LN +    G + +ANPRNAA+G LR+L+      R L+ F
Sbjct: 176 IS--LEVRGECYMPKASFLKLNQQREEEGVEVFANPRNAAAGSLRQLDTRIAAQRNLSTF 233

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ L     I A  Q+  L ++  LGF  N+  R  +T   + +Y  E    RS LPY+I
Sbjct: 234 LYTLADFGPIEANDQFSALNELDQLGFRTNHERRVCHTIDEVWAYIEEFHDKRSELPYEI 293

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV+ F  Q  LG   ++PRW  ++KF  ++A T +  I+  +GRTG++TP A + 
Sbjct: 294 DGVVIKVNNFKDQDALGFTVKAPRWAAAYKFPPEEAETVIETIEWTVGRTGVVTPTAVMT 353

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  ++ A+LHN D+IK            +DIR+GD V++ +AG++IP+V  ++  
Sbjct: 354 PVRVAGTTVSRASLHNVDFIKM-----------KDIRIGDSVIIYKAGDIIPEVAKVLEE 402

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R   ++PF  P+ CP C S ++            A RC     C AQ  E L HFVSR+
Sbjct: 403 KRTETSEPFEAPTHCPECGSELIHLDEE------VALRCINPK-CPAQIKEGLSHFVSRN 455

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NI+GLG + L+  F      + ++  AD++ L   Q  +      +    + S  NL 
Sbjct: 456 AMNIDGLGPRVLEQMFDK----YLVKDVADLYFLTEEQLLT------LDKIKEKSANNLL 505

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I++ +  S+ER IF LGIRHVGA+ AR LA+++   +  ++               +I
Sbjct: 506 RAIHQSKENSVERLIFGLGIRHVGAKAARILAEHFGDLRTLSKAKE----------EEII 555

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVF 654
            +  +G  IA+++V ++ N      ++ L K               + V S  + K +V 
Sbjct: 556 SLETIGATIAESVVTYFDNQEVHDLLDELEKAGVNFAYLGLRTDQLEEVESPFKEKTVVL 615

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG L    R +A+E +  LG  V+  +S+KTDI++ G+  GSKL KAQ LGV + +E Q 
Sbjct: 616 TGKLSHFTREEAKERIENLGGKVTGSVSKKTDIVVAGEEAGSKLTKAQSLGVTVWDEAQM 675

Query: 715 LFLLQ 719
           +  ++
Sbjct: 676 VAAIE 680


>gi|254283004|ref|ZP_04957972.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR51-B]
 gi|219679207|gb|EED35556.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR51-B]
          Length = 675

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 243/717 (33%), Positives = 374/717 (52%), Gaps = 52/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +       E++ L + I      YYQ   P + D++YDA  RR   +  A P+LA    P
Sbjct: 1   MDPATV-AEVAELRERIKRWALEYYQQDAPSVPDADYDAAFRRLHELESAHPELA---SP 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G +      +VTH +P LSL+  ++ +D   F  R+     K   N+I +  E
Sbjct: 57  DSPTRRVGAQPIAGFEQVTHRLPMLSLDNAFSSDDFDAFDQRVSERLGK---NAIDYCCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  +++ YE+GK   AA RGDG  GED++  +R I  IP        P+++EVRGE
Sbjct: 114 PKLDGIAVSLIYERGKLTQAATRGDGVVGEDITHNVRTIEAIPLALEGGGFPDVLEVRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT--- 246
           V++ +  F  LND   A G K + NPRNAA+G LR+L+P     R L+F  + +G     
Sbjct: 174 VFMPRVGFERLNDRARASGDKLFVNPRNAAAGSLRQLDPRVTARRPLDFCCYSVGFCSGQ 233

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                     ++ ++   G PV+  ++ A       +YY  +   R  LP+DIDG+V+KV
Sbjct: 234 IRDLGDRHSAVIARLGEWGLPVSQWMKVATAAEACEAYYQWLAGERDGLPFDIDGIVFKV 293

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q+ LG  +R+PRW I+ KF  ++  TR+LD++ Q+GRTG +TPVARL+PV +GG 
Sbjct: 294 DDLESQRILGFVSRAPRWAIARKFPAQEQRTRVLDVEFQVGRTGAITPVARLDPVFVGGV 353

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN D I+ L            + +GD V+++RAG+VIP+VV +I+ ER    +
Sbjct: 354 TVSNATLHNADEIERL-----------GLCIGDSVIIRRAGDVIPQVVAVILEERDESVR 402

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              FP  CP C S V R          AA RC GGL C AQ+   L+HF SR A +I+GL
Sbjct: 403 AVVFPDHCPACGSEVERVEGE------AAFRCVGGLICPAQRRASLQHFASRKAMDIDGL 456

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ ++     E     I   A ++ L      S      +   G+ S  NL  +++K +
Sbjct: 457 GEKVIEQLVARE----LITDIAGLYGLDLETLVS------LDRMGEKSAENLVAALDKSK 506

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L RFI++LGIR VG   AR+LA ++ S          +          L  V  VG 
Sbjct: 507 ATTLARFIYALGIREVGESTARALAMHFGSLDAIEGAGQEV----------LEEVDDVGP 556

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH---EKNVSSEIENKKLVFTGTLQKIQR 663
           ++A  I  F+    N   +EAL++                   +  +  V +G L+ + R
Sbjct: 557 VVATHIRNFFSEAANRRTIEALIEAGVHWPDPVDSMAAGEEGALAGESWVVSGKLESMSR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +A + +  LGA V+  +S KT  ++ G   GSKL+KA+ LG+ +++E  FL LL++
Sbjct: 617 DQASDRLRSLGARVTGGVSNKTTRLLAGPGAGSKLKKAESLGLPVLDESDFLALLEE 673


>gi|17229209|ref|NP_485757.1| NAD-dependent DNA ligase LigA [Nostoc sp. PCC 7120]
 gi|81772126|sp|Q8YW98|DNLJ_ANASP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|17135537|dbj|BAB78083.1| DNA ligase [Nostoc sp. PCC 7120]
          Length = 677

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 228/713 (31%), Positives = 366/713 (51%), Gaps = 55/713 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L + +      YY    PI+ D+ YD L R    +    P+L     P+ P  +I
Sbjct: 9   KRVEELRRLLQQASYAYYVSDAPIMEDAVYDQLYRELQQLEIQHPELV---TPDSPTQRI 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G         V H+IP  SLE  +N+E+L+ +  R  R   +       +  E KIDG+ 
Sbjct: 66  GERPATQFLSVRHNIPLYSLENAFNVEELQAWDQRWRR---QVAPTEAEYVAELKIDGSA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGEVYISK 195
           I + Y+ G  V  A RGDG +GED++  +R I +IP  L+   +   E +EVRGE ++  
Sbjct: 123 IALTYQNGILVRGATRGDGVTGEDITQNVRTIRSIPLRLNFDGIEKVEKVEVRGEAFLPL 182

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL---GKTSEIFA 251
             F  +N+E    G + +ANPRNAA+G LR+L+      R L+FF + L   G      A
Sbjct: 183 EVFKQINEERQKAGEQLFANPRNAAAGTLRQLDSRIVARRRLDFFAYTLHISGMDDASIA 242

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q+E L+ ++ +GF VN   +   +   +  YY    + R  LPY  DG+V K++ F L
Sbjct: 243 NTQWEALELLQKMGFRVNPNHKLCQSLAEVADYYKYWDTERLNLPYMTDGVVLKLNSFKL 302

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG   R PRW ++ K+  ++A TR+ +I + +GRTG LTP+A++ PV + G  ++ A
Sbjct: 303 QEQLGFTQRFPRWAVALKYPAEEAPTRVENIAVNVGRTGALTPLAQMRPVQLAGTTVSRA 362

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L           DIR+GD V+V++AGE+IP+VV +I   R  D QPF  P
Sbjct: 363 TLHNSDRIAQL-----------DIRIGDTVIVRKAGEIIPEVVRVIKELRPADTQPFIMP 411

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C   VVR+         A  RC    +C A     ++H+VSRDA +I+G+G++ +
Sbjct: 412 THCPVCGQPVVRETGE------AVTRCVNA-SCPAILKGSIEHWVSRDALDIKGVGEKLV 464

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                       +   AD++ L   +  +      +   G+ S   L ++I + +N    
Sbjct: 465 YQLVDK----GLVHSVADLYDLTTERLFA------LERMGEKSAQKLIEAIAQSKNQPWS 514

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LGIRHVG+  A+ L++ Y +    +    +           +  +  +G  IAQ+
Sbjct: 515 RVLYGLGIRHVGSVNAQLLSEKYRAVAELSSAKQS----------DIEGIYGIGAEIAQS 564

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRHKAQ 667
           + ++++   N   +E L           E  V +    ++  K  V TGTL  ++R + +
Sbjct: 565 VYQWFRINANQSLIERLQAAGLKLANTEEIPVMNNGILKLNGKTFVVTGTLPTLKRDEVK 624

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             + + G  V+  +S+KTD ++VG++ GSKLEKAQ LG+  + E Q L +L++
Sbjct: 625 ALIQKAGGKVTDSVSKKTDYLVVGEDAGSKLEKAQALGIAQLTETQLLEILEE 677


>gi|283779823|ref|YP_003370578.1| DNA ligase, NAD-dependent [Pirellula staleyi DSM 6068]
 gi|283438276|gb|ADB16718.1| DNA ligase, NAD-dependent [Pirellula staleyi DSM 6068]
          Length = 676

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 239/707 (33%), Positives = 376/707 (53%), Gaps = 48/707 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  + L +L + I  HD  YY  ++P I D EYD L +    I  +FP+L     P+ P 
Sbjct: 7   EILERLQALREAIRRHDYLYYVRAQPEISDLEYDRLMQDLTTIEASFPELV---TPDSPT 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G E    L +V H  P LS+E  + +EDL+KF  R  +     D  ++ + +E K+D
Sbjct: 64  QRVGEEPMEGLVQVAHRAPMLSIENSYTVEDLQKFAERTSKSL---DGEAVEWVVELKVD 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194
           G  I++RYE G  V A  RG+G  G+DV+  +R I  +P  L  + IP ++EVRGEVY++
Sbjct: 121 GVAISVRYENGLLVQALTRGNGEVGDDVTHNVRTIADVPLRLYGDKIPAVLEVRGEVYMT 180

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
            +D + LN     +G++ YAN RN ASG +R L+P     R L   VHG+G    + A+ 
Sbjct: 181 NSDLVLLNKRQQELGKELYANTRNVASGTIRLLDPKLCAERKLRMLVHGVGVCEGMTAEN 240

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             + L+++  LG P     +   TF   V Y  E+      L +++DGLV KV+ F  + 
Sbjct: 241 HMQFLEQVSSLGLPPTPHCKCFATFSEAVKYCEEIPERLHELDFEVDGLVLKVNRFDQRA 300

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG+R++SPRW+I++KF + +A+T+LL I +Q+G+TG +TPVA LEPV + G  ++ A+L
Sbjct: 301 KLGQRSKSPRWVIAYKFEKYEATTKLLGISVQVGKTGAITPVAELEPVQLAGTTVSRASL 360

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I             +DIR+GD V+V++AG++IP +V +   ER  D   F FP+ 
Sbjct: 361 HNADEI-----------VRKDIRIGDIVVVEKAGKIIPHIVRVEAAERTTDLPVFQFPTH 409

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S V +D            RCT   +C AQ  E+L+ F +R A +IEGLG + +D 
Sbjct: 410 CPVCGSDVAKDEG------GVYIRCTNP-SCPAQLREKLRFFATRGAMDIEGLGDKLVDQ 462

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
              S+     +    D++ L      +  K+ ++   G+ S T L + I   ++  L R 
Sbjct: 463 LVASK----LVTCYGDLYRL------TLDKLTSLERMGEKSATKLLEGIVASKSRPLSRL 512

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +  L IRH+G+  ++ LA+++ +     Q               L RV  VG+I A ++ 
Sbjct: 513 LNGLSIRHIGSNGSQVLARHFGTLDAIRQAT----------LEDLSRVSEVGEITAASVY 562

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           EF  +      ++ L+     +                K  V TGTL K  R + ++ + 
Sbjct: 563 EFLHSDYGKTTIDDLVALGLNTQEPKSAIPTGEGIFAGKTFVVTGTLSKFSRDEVEDLIE 622

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + G   S+ +S+KTD ++ G   GSKL KA+ LGVKI++E  F+ LL
Sbjct: 623 KHGGKASSSVSKKTDYLLAGAEAGSKLAKAESLGVKILSEADFIALL 669


>gi|317127163|ref|YP_004093445.1| DNA ligase, NAD-dependent [Bacillus cellulosilyticus DSM 2522]
 gi|315472111|gb|ADU28714.1| DNA ligase, NAD-dependent [Bacillus cellulosilyticus DSM 2522]
          Length = 670

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 242/717 (33%), Positives = 394/717 (54%), Gaps = 54/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +  ++E+  L   ++ +   YY   +P + D+EYD L      +  A+P+  R    
Sbjct: 1   MAKDDIKQEIDRLTNILNDYAYHYYVLDQPKVSDAEYDQLLHELTKLEEAYPEWKRD--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+      KV H +P LSL   +N E+LR F  R+ +       +   ++ E
Sbjct: 58  DSPSERVGGQPLEHFSKVQHDVPMLSLSNAFNEEELRDFDRRVRQGLG----HEPTYSCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +T++YE+G+FV  A RGDG  GED+++ ++ +P+IP  L   +   IEVRGE 
Sbjct: 114 LKIDGLAVTLKYEQGRFVQGATRGDGTVGEDITSNLKTVPSIPLRLKEAV--TIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           ++ K  F+ LN+     G + +ANPRNAA+G LR+L+P     R L+ F++ +GK     
Sbjct: 172 FMPKRSFIRLNEAKEKNGEQLFANPRNAAAGSLRQLDPKIAAKRSLDIFIYSVGKVEGED 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +  L  ++ LGF  N   +   T   ++ Y     S R+ LPY+IDG+V KVD  +
Sbjct: 232 IPSHHGALNYVKELGFKTNEHQKHCKTIDEVIDYCESWLSKRADLPYEIDGIVIKVDALA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  A+SPRW  ++KF  ++  T LLDI++ +GRTG++TP A LEPV++ G  +  
Sbjct: 292 DQEQLGFTAKSPRWATAYKFPAEEVVTTLLDIELSVGRTGVITPTAILEPVSVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+ L           D+++GD+V +K+AG++IP+VV+++V +R  + + FS 
Sbjct: 352 ASLHNEDLIREL-----------DLKLGDKVTIKKAGDIIPEVVNVLVEQRTGEERDFSM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S ++R           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTQCPECHSELIRIEGE------VALRCVNPK-CPAQIREGLIHFVSRNAMNIDGLGERV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F  +     I   AD++ L+R        + N+   G+ SV NL  +I   +  SL
Sbjct: 454 ITQLFNHK----LIEDVADLYKLER------QLLLNLERMGEKSVDNLLRAIEASKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIRHVGA+ A++LA+++ +                     L  +  VG+ +A 
Sbjct: 504 EKLLFGLGIRHVGAKAAKTLAQHFNTIDQIQNATR----------EDLEAINEVGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           A+V +++ P     +  L      L+   P+I   +   ++    K +V TGT++++ R 
Sbjct: 554 AVVTYFETPEVKELISELEALDINLEYKGPNINVSDDANNAYFSGKTVVLTGTMEQMARG 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            A++ +   G  V+  +S KTD++I G+  GSKL+KAQ L ++I +E +FL  L + 
Sbjct: 614 DAKKEIEARGGNVTGSVSSKTDLLIAGEKSGSKLKKAQDLNIEIWDEARFLEELTKE 670


>gi|256839697|ref|ZP_05545206.1| DNA ligase, NAD-dependent [Parabacteroides sp. D13]
 gi|256738627|gb|EEU51952.1| DNA ligase, NAD-dependent [Parabacteroides sp. D13]
          Length = 664

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 228/708 (32%), Positives = 353/708 (49%), Gaps = 50/708 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              ++ +L  E+  H+  YY  S P I D E+D + +    +  A P+ A   DP+ P  
Sbjct: 2   VEAKIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFA---DPDSPTR 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G +++    +V H  P LSL   ++ +++R F  R  R      +       E K DG
Sbjct: 59  RVGSDLSKEFEQVVHKYPMLSLGNTYSEDEIRDFYDRTVRSL----NEPFEIVAELKYDG 114

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195
           T I++ YEKG+   A  RGDG  G+DV+A I+ I ++P  L   + PE  E+RGEV +  
Sbjct: 115 TSISLTYEKGRLTRAVTRGDGTRGDDVTANIKTIRSVPLRLRGSDFPEEFEIRGEVLLPW 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
            +F  LN E        +ANPRNAASG L++ NP  +                + A+G Y
Sbjct: 175 AEFDRLNKEREEQEEPLFANPRNAASGTLKQQNPAIVASRKLDAYFYYLLGENLPAEGHY 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ  R  GF + + +R+  +   I  Y       R  LP   DG+V KV+    Q+ L
Sbjct: 235 ENLQAARAWGFKIPDVIRKCQSLQDIFDYIAYWDVERKNLPVATDGIVLKVNSLRQQRNL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  ++SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA LEPV + G ++  A+LHN
Sbjct: 295 GFTSKSPRWAIAYKFQAERAETRLNSVSFQVGRTGTVTPVANLEPVLLAGTVVKRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434
            D I+GL           D+ +GD+V V++ GE+IPK+V + V  R         F   C
Sbjct: 355 ADIIEGL-----------DLHIGDQVYVEKGGEIIPKIVGVNVEARSMLMGDKVRFIRVC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +VR          AAH C     C  Q   R++HFV+R A NI    +      
Sbjct: 404 PECGTPLVRPEGE------AAHYCPNESGCPPQIKGRIEHFVTRKAMNINIGPET----- 452

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +    A  ++  AD++TL          +  +  + + S  NL  S+ + + +  ER +
Sbjct: 453 VEDLYNAGYVKDSADLYTLTVAD------LLRLERWAEKSAQNLMSSLEESKQVPFERVL 506

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIR VG  +A+ L   + S +   Q               L+ V  +G+ IAQ+++ 
Sbjct: 507 FGLGIRFVGETVAKRLVSAFHSIEALEQA----------SLEDLVAVDEIGERIAQSVLS 556

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++ + +N   V  L ++        E+  N S +++   +V +GT  K  R + +  + Q
Sbjct: 557 YFSDEKNRTLVNRLKEQGLRMAVSEEQLANRSEKLKGLTIVISGTFSKHSRDEYKAMIEQ 616

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            G   S  +S KTD I+ G+N G +KLEKA +LGVKI+NE+ FL +L+
Sbjct: 617 HGGKNSGSVSGKTDYILAGENMGPAKLEKAAKLGVKIINEDTFLNMLE 664


>gi|225022751|ref|ZP_03711943.1| hypothetical protein CORMATOL_02796 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944472|gb|EEG25681.1| hypothetical protein CORMATOL_02796 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 699

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 208/718 (28%), Positives = 347/718 (48%), Gaps = 48/718 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            P E    ++  +E   L  E++ H + YY    P I D+E+DAL ++ +A+    P+LA
Sbjct: 4   TPAETTDTQEIHQEWQRLASEVTRHRELYYNQ-TPEITDAEFDALFKKLEALEADHPELA 62

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+ P  ++G  +  S   V H    LSL+ +++ E+L +++ R+         ++ 
Sbjct: 63  ---TPDSPTQQVGAPVESSFENVEHLERMLSLDNVFDEEELDEWLQRV---------DAP 110

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV----LSLNIP 182
            +  E KIDG  + + Y  G    AA RGDG  GEDV+   + I  +P +        IP
Sbjct: 111 EYVTELKIDGLSLALVYRNGVLERAATRGDGRIGEDVTENAKVIQDVPHMLTATEEFPIP 170

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH 241
            ++EVRGEV+I+  DF  +N++    G KP+ANPRNAA+G LR+ +      R L    H
Sbjct: 171 NLLEVRGEVFIAVEDFAEVNEQRQKDGGKPFANPRNAAAGSLRQKDVEAVRRRKLRMLCH 230

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           G+G T       QY   + +   G PV++  +   T   +       +  R     ++DG
Sbjct: 231 GIGATEGFTPASQYHAYEALAAWGLPVSDYTKLVKTIDEVHKQVAYWEKHRGDAVCEMDG 290

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           LV KVD  + Q+QLG  +R+PRW I++K+  ++  T+LLDI   +GRTG +TP A +EPV
Sbjct: 291 LVVKVDSIAEQRQLGATSRAPRWAIAYKYPPEEVQTKLLDIHEGVGRTGRVTPYAVMEPV 350

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
           ++ G+++  ATLHN+  +K            + + +GD V++++AGE+IP+V+  +V  R
Sbjct: 351 SVAGSIVELATLHNQTEVKR-----------KGVLIGDTVVIRKAGEIIPEVLGPVVERR 399

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + + FP  CP C +++         +     RC     C AQ   R+K+   R  F
Sbjct: 400 DGTEREYVFPENCPSCGTKLA-----PQREGDVDWRCPNSQKCPAQVAARIKYLADRGRF 454

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IE LG++  +   +S      +     +F L       T+      G  + +   L  +
Sbjct: 455 DIEALGEKAAEDLVRS----GVLVDEGGLFNLTEADLLRTSIYTTKKGTLNATGKKLLKN 510

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +   ++  L R + SL IR VG   +R+LA  Y S                     +   
Sbjct: 511 LETAKHTDLWRVMASLSIRMVGNTASRALASRYRSLDALRAAT----------VEDIAET 560

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             VG ++AQ+  ++++   +   V+   K                +    +V TG+L+  
Sbjct: 561 EGVGLVMAQSFKDWFEVQWHCDIVDQWAKSGVTMEDDASDQPEQVLAGLTVVVTGSLEGF 620

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R  A+E +   G   S  +S+KTD ++VG+  GSK +KA+ LG+ I++E  F+ LL 
Sbjct: 621 TRDSAKEAIISRGGKASGSVSKKTDYVVVGEKAGSKEQKARDLGLTILDEAGFVQLLA 678


>gi|257054924|ref|YP_003132756.1| NAD-dependent DNA ligase LigA [Saccharomonospora viridis DSM 43017]
 gi|256584796|gb|ACU95929.1| DNA ligase, NAD-dependent [Saccharomonospora viridis DSM 43017]
          Length = 731

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 223/723 (30%), Positives = 362/723 (50%), Gaps = 44/723 (6%)

Query: 5   QLIPIEALS--IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           +  P+E +     + R+  S+L +EI  H   YY    P I D+E+D L R  + +    
Sbjct: 32  RTTPVEGIQDVPAEVRERHSALVEEIRGHQFRYYVLDAPTISDAEFDQLMRDLERLEAEH 91

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P L     P+ P   +GG  +       H    LSL+ ++++++L+ +I R+ R      
Sbjct: 92  PALV---SPDSPTQTVGGTFSTEFRAHDHLERMLSLDNVFDLDELQAWIDRVEREVG--- 145

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----S 178
             S  +  E K+DG  + + YE G+ V    RGDG +GEDV+  +R +  +P  L     
Sbjct: 146 -GSTRYLCELKVDGLAVNLVYENGRLVRGLTRGDGRTGEDVTLNVRTVQDVPERLTATDR 204

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237
             +P+++EVRGEVY    +F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L 
Sbjct: 205 FPVPDVVEVRGEVYFRVEEFADLNAALVKAGKAPFANPRNAAAGSLRQKDPKVTRSRPLR 264

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
              HGLGK        Q E  + +   G PV+   +  ++   ++ Y       R    Y
Sbjct: 265 LVCHGLGKRVGFEPTRQSESYEALAAWGLPVSPYSKVIDSTEELIEYIRYWNEHRYDAAY 324

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KVD+ SLQ++LG  +R+PRW +++K+  ++A+T LLDI + +GRTG +TP A 
Sbjct: 325 EIDGVVVKVDDVSLQRRLGTTSRAPRWAVAYKYPPEEANTTLLDIRVNVGRTGRVTPYAV 384

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           +EPV + G+ ++ ATLHN + +K            + + +GDRV++++AG+VIP+V+  I
Sbjct: 385 MEPVKVAGSTVSMATLHNAEEVKR-----------KGVLIGDRVVIRKAGDVIPEVLGPI 433

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           V+ R    + F  P+ CP C +++  +      +     RC    +C AQ  ERL H   
Sbjct: 434 VDLRTGTEREFVMPTHCPECGTQLAYE-----KEGDVDIRCPNARSCPAQLRERLFHLAG 488

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R AF+IE LG +      +S      I    D+F L               G    +   
Sbjct: 489 RGAFDIEVLGYEAAGALLRS----GVIADEGDVFDLTEEDLKRVDLFVTKSGQLSANGRR 544

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L D++   ++  L + +  L IRHVG   A++LA+ + S                     
Sbjct: 545 LLDNLAAAKDRPLWKVLVGLSIRHVGPTAAQALAREFGSIDAIDAASE----------ER 594

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
           L  V  VG  IA+A+ E++    +   VE   +         + +V   +E   +V TGT
Sbjct: 595 LAEVDGVGPTIAKAVREWFAVDWHREVVEKWRRAGVRMEAERDTSVPRNLEGLSIVVTGT 654

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L++  R +A+E +   G   +  +S+KT  ++VGD PGSK +KA QL + +++E+ F  L
Sbjct: 655 LREFSRDEAKEAIMARGGKAAGSVSKKTAFVVVGDAPGSKYDKAVQLKIPVLDEDGFRVL 714

Query: 718 LQQ 720
           L Q
Sbjct: 715 LDQ 717


>gi|254476645|ref|ZP_05090031.1| DNA ligase, NAD-dependent [Ruegeria sp. R11]
 gi|214030888|gb|EEB71723.1| DNA ligase, NAD-dependent [Ruegeria sp. R11]
          Length = 783

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 294/763 (38%), Positives = 447/763 (58%), Gaps = 57/763 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           + +   +  ++L++E+AR     L+ E+   D  Y+Q   P I D++YDA KR+  A+A 
Sbjct: 32  VTQPGDMDPQSLTLEEARPLFEQLQDELRAADLAYHQKDAPEISDADYDAKKRQYRALAE 91

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           AFP+LA        L+ +G  +     K+TH+   +SL   ++ +D+  F   + ++   
Sbjct: 92  AFPNLAAEATE---LDTVGAPVASGFGKITHAQRMMSLGNAFDDDDVADFDKGLRKYLGL 148

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                + +T EPKIDG  +++RYE G  V+AA RGDG  GE+V+A  R I  IP+ +   
Sbjct: 149 SASEPLAYTAEPKIDGLSLSLRYENGTLVHAATRGDGAVGENVTANARTIDDIPQEIPNA 208

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P I+EVRGEVY+S  DF ALN+   A G K +ANPRNAA+G LR+L+      R L FF
Sbjct: 209 -PAILEVRGEVYMSHEDFAALNERHEARGGKTFANPRNAAAGSLRQLDAEITRARPLRFF 267

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ SE   + Q++ L ++R +GF  N   R   +   ++++Y +++  R+TL YDI
Sbjct: 268 AYSWGELSEPLGETQFDALARLRKMGFQTNPLTRHCTSVADLIAHYRQIEEQRATLGYDI 327

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD  +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL+
Sbjct: 328 DGVVYKVDALALQDRLGFRSTTPRWAIAHKFPAELAWTRLEGIDIQVGRTGALSPVARLQ 387

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG +++NATLHNEDYI GLD+ G+ +R G+DIR+GD V V RAG+VIPK+ D+ ++
Sbjct: 388 PVTVGGVVVSNATLHNEDYIAGLDSKGEEIRDGKDIRIGDWVQVYRAGDVIPKIADVDLS 447

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R   A+ ++FP+ CP C S  VR+         A  RCTGGL C AQ +E+LKHFVSR 
Sbjct: 448 KRPDGAEAYAFPTTCPQCDSPAVREEG------DAVRRCTGGLICPAQAVEKLKHFVSRK 501

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+I+GLG +Q++ F+   D   +I+ PADIF+LQ R   + TK++N  G+G+ S  NL+
Sbjct: 502 AFDIDGLGAKQIEMFY--GDETLAIKTPADIFSLQARDAQNLTKLKNRDGWGETSAANLF 559

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN-------------- 585
            +I  +R I+L R IF LGIRHVG   AR LA +Y+ +   A+ ++              
Sbjct: 560 AAIEDKREIALARLIFGLGIRHVGEVGARDLALHYMDWDAMAEAVDTARPAALAHRAADE 619

Query: 586 -----------------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
                                        ++       W  L  +  +G  +  ++ + +
Sbjct: 620 AEDAERIAAAQANRRARIKEVRDSAIAQCDVPPAARAAWEDLTGIDGIGATLGLSLSDAF 679

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            N     A +AL   ++  +        S +  K +VFTGTL+K+ R +A+     LGA 
Sbjct: 680 ANADERAAFDALRAYLTI-VPPEAPQKDSPVAGKTVVFTGTLEKMTRAEAKARAEGLGAK 738

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+KTDI++ G   GSK +KA+ LG++I++E+ +L L++
Sbjct: 739 VAGSVSKKTDILVAGPGAGSKEQKARDLGIRILDEDGWLTLIE 781


>gi|327475239|gb|AEA77214.1| DNA ligase [Bacillus sp. 15.4]
          Length = 668

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 238/717 (33%), Positives = 380/717 (52%), Gaps = 56/717 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + I+ A ++++ L   ++ ++  Y+   KP + D+EYD +     AI + FP+L      
Sbjct: 1   MDIKSAEQKVAELHNLLNQYNYEYHVLDKPSVPDAEYDRVMNELIAIENKFPEL---RTA 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG    +  KV H  P LSL   +N EDLR F  ++     +   +   +  E
Sbjct: 58  DSPTQRVGGSTLQAFEKVQHRTPMLSLGNAFNKEDLRDFDRKVR----QAAGDDYSYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G F   A RGDG  GED++A ++ I +IP  +   +   +EVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGLFRQGATRGDGTVGEDITANLKTIKSIPLRIPEPM--TMEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           ++ K  F ALN        +P+ANPRNAA+G LR+L+P    +R L+ +++ +    E  
Sbjct: 172 FMPKRSFEALNKAKEEREEEPFANPRNAAAGSLRQLDPRIAASRNLDIYLYSIADVGETG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L  +   GF  N   ++  T   ++ Y       R  L YDIDG+V KVD   
Sbjct: 232 VVSHSSGLDLLDKFGFKTNKERKKCQTIDEVIEYVEGWVERRPDLQYDIDGIVIKVDSLE 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  A+SPRW I++KF  ++  T+L +I++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 LQEQLGTTAKSPRWAIAYKFPAEEVVTQLKEIELSVGRTGVVTPTAILEPVRVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DI++GD V+VK+AG++IP+VV+++   R    + F  
Sbjct: 352 ASLHNEDLIR-----------EKDIKIGDYVVVKKAGDIIPEVVNVLEERRTGGEKDFLM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PEGCPECESGLVRLEGE------VALRCINPK-CPAQIREGLIHFVSRNAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   FK       I   ADI+ L+R Q         +   G+ SV NL ++I   +  SL
Sbjct: 454 ISQLFKE----GLIEDVADIYRLERDQL------LQLERMGEKSVDNLLNAIEASKANSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIRHVGA+ A++LA+ +                       L  +  +GD +A 
Sbjct: 504 EKLLFGLGIRHVGAKAAKTLAQEFGDIDTLMNASK----------DDLTAINEIGDKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+V +++    +  +  L      +  +       + + S    + +V TG ++++ R++
Sbjct: 554 AVVAYFEKEEAVELIGELRTAGVNTEYKGPKPVKAEEIDSYFAGRTVVLTGKMEQLGRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A++ + +LG  V+  +S+KTD++I G+  GSKL KAQ+L ++I +EE    LL + N
Sbjct: 614 AKQKIEELGGKVTGSVSKKTDLLIAGEEAGSKLAKAQELDIEIWDEE---KLLGELN 667


>gi|145224827|ref|YP_001135505.1| NAD-dependent DNA ligase LigA [Mycobacterium gilvum PYR-GCK]
 gi|190359265|sp|A4TDZ8|DNLJ_MYCGI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145217313|gb|ABP46717.1| DNA ligase, NAD-dependent [Mycobacterium gilvum PYR-GCK]
          Length = 712

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 224/737 (30%), Positives = 350/737 (47%), Gaps = 54/737 (7%)

Query: 1   MKKRQLIPIEALSIEQA--------RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALK 52
           M    +   E++  EQA        R+    L  E+  H   YY    PII D+E+D L 
Sbjct: 1   MSPEAIPDPESMLAEQAHDALDPDLRRSWQELADEVREHQFRYYIRDAPIITDAEFDQLL 60

Query: 53  RRCDAIAHAFPDLARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFI 111
           RR  A+   +P+L     P+ P   +GG           H    LSL+ ++++E+L  + 
Sbjct: 61  RRLQALEDEYPEL---RTPDSPTQLVGGAGFATDFTAAEHLERMLSLDNVFDLEELAAWA 117

Query: 112 TRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP 171
            RI             +  E KIDG  + + Y  G+   AA RGDG +GEDV+   R I 
Sbjct: 118 ARIRTEIGADA----QYLCELKIDGVALALVYRDGRLERAATRGDGRTGEDVTLNARTIE 173

Query: 172 TIPRVLSLNIPE----IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL 227
            IP  LS         ++EVRGEV+    DF  LN  ++A G+ P+ANPRN+A+G LR+ 
Sbjct: 174 DIPERLSGTNEFPLPTVVEVRGEVFFRVADFEDLNAGLVAEGKPPFANPRNSAAGSLRQK 233

Query: 228 NPT-DITRYLNFFVHGLGKTSEI---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVS 283
           NP     R L    HGLG             ++  + ++  G PV++   Q      +  
Sbjct: 234 NPAVTARRRLRMICHGLGHVESSGGSPFPTLHDAYRALKAWGLPVSDHTAQVTGLDAVTE 293

Query: 284 YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDID 343
                   R  + ++IDG+V KVD  +LQ++LG  +R+PRW +++K+  ++A TRLLDI 
Sbjct: 294 RIAYWGEHRHDVEHEIDGVVVKVDAVALQRRLGATSRAPRWAVAYKYPPEEAQTRLLDIR 353

Query: 344 IQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLV 403
           + +GRTG +TP A +EPV + G+ +  ATLHN   +K            + + +GD V++
Sbjct: 354 VNVGRTGRVTPFAYMEPVKVAGSTVGLATLHNASEVKR-----------KGVLIGDTVVI 402

Query: 404 KRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463
           ++AG+VIP+V+  +V+ R    + F FP+ CP C S +         +  A  RC    +
Sbjct: 403 RKAGDVIPEVLGPVVDLRDGSEREFVFPTHCPECGSELA-----PAKEGDADIRCPNTRS 457

Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK 523
           C AQ  ER+ H   R AF+IEGLG +      +    A  I    D+F L       T  
Sbjct: 458 CPAQLRERVFHVAGRGAFDIEGLGYEAATALLQ----AGVIADEGDLFGLTADDLLRTEL 513

Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
                G    +   L  ++ K +   L R + +L IRHVG   AR+LA  + S +     
Sbjct: 514 FTTKAGELSANGKRLLANLGKAKAQPLWRVLVALSIRHVGPTAARALATEFGSLEAIETA 573

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
                         L     VG  IA A+++++    +   V+   +         + ++
Sbjct: 574 SE----------EQLAGTEGVGPTIAAAVIDWFTVDWHRAIVDKWREAGVRMADERDASI 623

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              +E   +V TG+L    R +A+E +   G   +  +S+KT  ++ GD PGSK +KA +
Sbjct: 624 ERTLEGLSIVVTGSLAGFSRDEAKEAIIARGGKAAGSVSKKTAYVVAGDAPGSKYDKAIE 683

Query: 704 LGVKIMNEEQFLFLLQQ 720
           LGV +++E+ F  LL +
Sbjct: 684 LGVPVLDEDGFRRLLAE 700


>gi|257791950|ref|YP_003182556.1| DNA ligase, NAD-dependent [Eggerthella lenta DSM 2243]
 gi|325829905|ref|ZP_08163363.1| DNA ligase (NAD+) [Eggerthella sp. HGA1]
 gi|257475847|gb|ACV56167.1| DNA ligase, NAD-dependent [Eggerthella lenta DSM 2243]
 gi|325488072|gb|EGC90509.1| DNA ligase (NAD+) [Eggerthella sp. HGA1]
          Length = 708

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 232/737 (31%), Positives = 369/737 (50%), Gaps = 53/737 (7%)

Query: 1   MKKRQLIPIEALSIEQA----RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCD 56
           M   Q   ++  ++ +A       + +L +EI +H   YY    P I D+ +D+L R   
Sbjct: 1   MADEQQTLLDEQALAEATNDPAARIDALRREIEHHSYLYYANDAPEISDAAFDSLMRELR 60

Query: 57  AIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR 116
            +  A P+L    DP+ P  ++GG +      V H+    SL+   ++++L  +I R+  
Sbjct: 61  ELEAAHPELI---DPSSPTQRVGGYVGEQFAPVRHARRMYSLDNAMDLDELDAWIERVTE 117

Query: 117 FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176
            + +     +    E KIDG+ I + YE G+ + AA RGDG +GEDV+A +R +  +P  
Sbjct: 118 AFGRM----VPVVCELKIDGSSIALTYEDGRLMRAATRGDGTTGEDVTANMRTVKDVPLR 173

Query: 177 LSL-------NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP 229
           L         +    +E+RGEVY+ K+ F ALN   +  G++ +ANPRNAA+G LR+ +P
Sbjct: 174 LRQGALGGLRDADAPVELRGEVYMPKSSFDALNVAAVENGKQAFANPRNAAAGSLRQKDP 233

Query: 230 T-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM 288
           +    R L+ F++ +     + A+GQ+E+L  +R  GF VN  V    T   + ++    
Sbjct: 234 SITANRDLSTFIYAVADERALNAEGQWELLAWLREAGFHVNPDVELCQTREEVHAFCERA 293

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
            + R  LPY+IDG+V KV+ F+ Q+ +G  AR+PRW ++ KF  ++ +T L DI +Q+GR
Sbjct: 294 VARREDLPYEIDGVVVKVNSFAQQESMGYTARAPRWAVAFKFPPEEKTTLLRDITVQVGR 353

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG LTPVA L+PV + G+ +  ATLHNED ++            +D+RVGD V+V++AG+
Sbjct: 354 TGKLTPVAELDPVVVAGSTVARATLHNEDEVQR-----------KDVRVGDTVIVRKAGD 402

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           VIP+V+  ++  R  DA  +  P  CP C S V+R+            RC   + C AQ 
Sbjct: 403 VIPEVLGPVLALRPADAVQWEMPRTCPSCGSPVIREEGE------VDFRCIS-IDCPAQA 455

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DIFTLQRRQQTSTTKIENI 527
           LERL H+ SR A +I+G+G++ +    +S   +        D   L         K    
Sbjct: 456 LERLLHWASRGAMDIDGMGEEIVSRLVESGRLSDVADYYTLDEVELSLLDMGRVNKDGEP 515

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
           +  G      L  +I++ R     R +F LGIRHVG  IA  LA  Y S +   +     
Sbjct: 516 IRLGSTVAKKLVAAIDESRTRPFARALFGLGIRHVGKTIAELLAAAYPSIEALMEASE-- 573

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE---KNVS 644
                     L  +  VG  IA++   F + P N   +E L               + + 
Sbjct: 574 --------EDLAVIDGVGPKIARSAYLFLRTPDNAAVIERLRSHGVALADEAADAGEQLP 625

Query: 645 SEIENKKLVFTGTL--QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
             +     V TG+L    + R +A   +   GA VS  +S+KT  ++ G+  GSK +KA 
Sbjct: 626 QTLAGLTFVLTGSLVESGMTRDEAGAVLKARGAKVSGSVSKKTSFVVAGEAAGSKYDKAV 685

Query: 703 QLGVKIMNEEQFLFLLQ 719
            L V +++E   L +L+
Sbjct: 686 ALSVPVLDEAALLRILE 702


>gi|311029281|ref|ZP_07707371.1| NAD-dependent DNA ligase LigA [Bacillus sp. m3-13]
          Length = 668

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 247/714 (34%), Positives = 387/714 (54%), Gaps = 53/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  EQA K +  L   ++ ++  Y+   KP + D+EYD+L +    +    P+L   +  
Sbjct: 1   MEREQAEKRVRELHDVLNQYNYEYHVLDKPSVSDAEYDSLLQELLTLEKEHPEL---QTE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KV H  P LSL   +N +DLR F  R+ +       + + +  E
Sbjct: 58  DSPTQRVGGNILEMFNKVEHRTPMLSLGNAFNEDDLRDFDRRVKQAVG----DDVTYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I +IP  L   +   +EVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGLFVLGATRGDGTTGEDITMNLKTIKSIPLRLKEPV--TMEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ KN F  LN   +    +P+ANPRNAA+G LR+L+P    +R L+ +V+ L    E  
Sbjct: 172 YMPKNSFEKLNAAKMEREEEPFANPRNAAAGSLRQLDPKIAASRNLSVYVYSLADAGEAG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   +   +   ++ Y     + R  L YDIDG+V KVD   
Sbjct: 232 VDSHSEALDYLDKLGFKTNTERKVCTSIEEVLEYVTAWHTKRPDLSYDIDGIVIKVDNTE 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  A+SPRW I++KF  ++ +T+LLDI++ IGRTG++TP A LEPV + G  +  
Sbjct: 292 HQEQLGFTAKSPRWAIAYKFPAEEVTTKLLDIELNIGRTGVVTPTAILEPVRVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DI++GD V+VK+AG++IP+VV+++V++R  + + F+ 
Sbjct: 352 ASLHNEDLIR-----------EKDIKLGDTVIVKKAGDIIPEVVNVLVDQRTGEERDFTM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTHCPECESELVRIEGE------VALRCINPK-CPAQIREGLIHFVSRNAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       I   AD++ L + Q         +   G+ S  NL  +I K ++ SL
Sbjct: 454 IAQLFREN----LIEDVADLYKLTKEQL------LELERMGEKSADNLISAIEKTKDNSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR VGA+ A++LA+ +      A+               L  +  +GD +A 
Sbjct: 504 ERLLFGLGIRLVGAKAAKTLAQEFDHMDQLARLTK----------EELTAIHEIGDKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +IV +++ P     +  L +       +       ++V S    K +V TG L+++ R+ 
Sbjct: 554 SIVTYFEQPEVEELLAELKELGVNMAYKGPKPVSAEDVDSYFAGKTIVLTGKLEEMSRND 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+  + QLG  V+  +S+ T ++I G+  GSKL KAQ+LG+++ NE Q L  +Q
Sbjct: 614 AKAAIEQLGGKVTGSVSKNTHLVIAGEEAGSKLTKAQELGIEVWNEAQMLKEIQ 667


>gi|312140511|ref|YP_004007847.1| DNA ligase (nad+) liga [Rhodococcus equi 103S]
 gi|311889850|emb|CBH49167.1| DNA ligase (NAD+) LigA [Rhodococcus equi 103S]
          Length = 712

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 225/717 (31%), Positives = 352/717 (49%), Gaps = 45/717 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            + R+    L + +  H   YY    PI+ D E+D L    +A+    PDL     P+ P
Sbjct: 23  AEDRERWQELAEVVRNHQFRYYVLDSPIVSDGEFDQLFGELNALEERHPDL---RTPDSP 79

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-------YRFWQKKDDNSIF 127
              +GG        V H    LSL+ +++ ++LR +I RI                  + 
Sbjct: 80  TQLVGGGFATEFKAVDHLERMLSLDNVFDYDELRTWIGRIEAEVSDGRSAGSAAAHPDLH 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPE 183
           +  E KIDG  + + YE G+ V AA RGDG +GEDV+   R I  IP  L+      IP 
Sbjct: 140 YLCEVKIDGVALNLVYENGRLVRAATRGDGRTGEDVTLNARTISDIPETLTPSDEYPIPA 199

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
           ++EVRGEV+    DF ALN  ++A G+ P+ANPRN+A+G LR+ NP     R L    HG
Sbjct: 200 LLEVRGEVFFRLEDFAALNASLVADGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHG 259

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           LG+T      GQY+    +   G PV+    +      +V         R  + ++IDGL
Sbjct: 260 LGRTEGFDPAGQYDAYTALAAWGLPVSTHTSRVVGADAVVEKVKYWDEHRHDVEHEIDGL 319

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVDE SL ++LG  +R+PRW +++K+  ++A+T+L+DI + +GRTG +TP A +EPV 
Sbjct: 320 VVKVDEMSLHRRLGATSRAPRWAVAYKYPPEEATTKLVDIRVSVGRTGRVTPFAYMEPVL 379

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G+ +  ATLHN   +K            + + +GD V++++AGEVIP+V+  +V+ R 
Sbjct: 380 VAGSTVALATLHNASEVKR-----------KGVLIGDTVVIRKAGEVIPEVLGPVVDVRD 428

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              + F  P+ CP C + +         +  A  RC    +C AQ  ER+ H   R AF+
Sbjct: 429 GSEREFVMPTECPECGTTLA-----PAKEGDADIRCPNQRSCPAQLRERVFHVAGRGAFD 483

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IE LG +      +    A  I    D+F+L               G    +   L D++
Sbjct: 484 IEVLGYEAATALLQ----AGVISDEGDLFSLTEDDLLEAPLFRTKAGKLSANGRRLLDNL 539

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              +   L R + +L IRHVG   AR+LA  + S +                   L  V 
Sbjct: 540 GSAKQQPLWRVLVALSIRHVGPTAARALASEFGSLERIENA----------GVEELAAVD 589

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            VG  IA A+V +++   +   V              +++++  +E   +V TG+L+   
Sbjct: 590 GVGGTIAAAVVAWFEVDWHRDIVAKWRAAGVTMEDERDESIARNLEGLSIVVTGSLEGFS 649

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R +A+E +   G   +  +S+KT  +++G+ PGSK  KA++LGV I++E+ F  LL+
Sbjct: 650 RDEAKEAILVRGGKAAGSVSKKTAFVVIGEAPGSKAAKAEELGVPILDEDGFRRLLE 706


>gi|269216606|ref|ZP_06160460.1| DNA ligase, NAD-dependent [Slackia exigua ATCC 700122]
 gi|269130135|gb|EEZ61217.1| DNA ligase, NAD-dependent [Slackia exigua ATCC 700122]
          Length = 709

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 237/723 (32%), Positives = 370/723 (51%), Gaps = 48/723 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +AL  +  R  + +L +EI +H   YY    P I D+ +D+L R    +  A P+L    
Sbjct: 12  QALDADGTRARVRALRKEIEHHTYLYYAKDAPEISDAAFDSLMRELRELEQAHPELI--- 68

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
           DP  P  ++GG +      V H++   SL+    +E+L +++ R          + + F 
Sbjct: 69  DPTSPTQRVGGYVGEQFSPVRHAVRMYSLDNAMGLEELDEWLARTVEAIG----HPVPFC 124

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-------NIP 182
            E KIDG+ I + YE G    AA RGDG +GEDV+  +R +  IP  L         +  
Sbjct: 125 CELKIDGSSIALTYEAGVLTKAATRGDGTTGEDVTVNMRTVRDIPLRLRDAGIEGLVDPD 184

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH 241
             IEVRGEVY+ K  F +LN    A GR+ +ANPRNAA+G LR+ +PT    R L+ F++
Sbjct: 185 ASIEVRGEVYMPKRSFESLNAAAAAQGRQGFANPRNAAAGSLRQKDPTVTQGRDLSTFLY 244

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
            +   + + A+ Q+++L+ +   GF VN  V++ +T   +  +  E+   R +LPY IDG
Sbjct: 245 AIADDAPVRAESQWDLLKWLGDCGFHVNPDVKRCDTPEEVHRFCEEVADRRDSLPYGIDG 304

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVD F++Q+++G  AR+PRW I++KF  ++ +T L DI +Q+GRTG +TPVA L+PV
Sbjct: 305 VVVKVDSFAIQREMGFTARAPRWAIAYKFPPEEKTTVLRDISVQVGRTGAITPVAELDPV 364

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+++  ATLHN D +             +D+RVGD ++V++AG+VIP+V+  +++ R
Sbjct: 365 RVDGSVVARATLHNLDEVHR-----------KDVRVGDTIIVRKAGDVIPEVLGPVLSLR 413

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              A P+  P+ CP C S +VR+         AA RC   + C AQ  ERL H+ SR A 
Sbjct: 414 PEGAIPWEMPAMCPSCGSPLVREDGE------AAFRCVS-IDCPAQATERLIHWASRGAM 466

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPA-DIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           +I+G+G++ +    +S          +   + L   +   T K    +  G      L  
Sbjct: 467 DIDGMGEEIVARLVESGRLTDVADYYSLSEYDLATLETGRTNKEGEPVHLGSTIAAKLIA 526

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           SI   +     R +F LGIRHVG      +A  Y S     +               L  
Sbjct: 527 SIEASKARPFGRVLFGLGIRHVGKTTGAQIAAAYPSMDALMRASE----------EDLAA 576

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTL 658
           +  VG IIA++I  F + P N   +  L              ++V   +     V TG+L
Sbjct: 577 IDGVGGIIAKSIRAFLETPDNREVIHRLGVLGVRMEDVRTEGEDVPQTLAGITFVLTGSL 636

Query: 659 --QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
               + R +A   +  +GA VS  +S+KT  +I G+  GSK +KA  LGV +++E   L 
Sbjct: 637 VESGMTRDEAGSRLKAMGAKVSGSVSKKTGYVIAGEAAGSKYDKAVALGVPVLSEADLLR 696

Query: 717 LLQ 719
           LL+
Sbjct: 697 LLE 699


>gi|257060505|ref|YP_003138393.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8802]
 gi|256590671|gb|ACV01558.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8802]
          Length = 674

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 223/696 (32%), Positives = 365/696 (52%), Gaps = 51/696 (7%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
             +  YY    PI+ DS YD L R    +   +P L     P+ P  ++G +       +
Sbjct: 21  KANYAYYVLDNPIMEDSVYDQLYRELQDLESQYPILI---TPDSPTQRVGDQPAAQFNSI 77

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H+IP  SLE  +N+++L+K+  R  R+ Q  + +   +  E KIDG+ + + YE G  +
Sbjct: 78  RHNIPLYSLENAFNLQELQKWEERWQRYDQVSNSD---YVCELKIDGSALALTYENGILI 134

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
               RGDG +GE+++  +R I +IP  L+  N P  +E+RGE ++  N+F  LN E    
Sbjct: 135 RGVTRGDGITGEEITQNVRTIRSIPLKLTLENPPSRVEIRGEAFLPLNEFDRLNGERKQA 194

Query: 209 GRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP 267
           G   +ANPRNAA+G LR+L+   +  R L FF + L    +     Q+E L+ ++ +GF 
Sbjct: 195 GEPLFANPRNAAAGTLRQLDSKVVSERRLQFFAYTLHLPEDNSLSSQWESLEWLKKMGFL 254

Query: 268 VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
           VN   +   T   +  Y+   ++ R  LPY  DG+V K+++++LQ QLG   + PRW I+
Sbjct: 255 VNPNCQLCPTLEAVADYFCHWETTRHDLPYMTDGVVVKINDYALQNQLGFTQKFPRWAIA 314

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
            K+  ++A TR+ +I + +GRTG +TP+A +EPV++GG ++  ATLHN D +  L     
Sbjct: 315 LKYPAEEAPTRVKEIIVNVGRTGAVTPMAIMEPVHLGGTIVQRATLHNRDRVSEL----- 369

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447
                 DIRVGD V++++AGE+IP+V+ ++   R P++QP+  PS CP C S +VR +  
Sbjct: 370 ------DIRVGDTVIIRKAGEIIPEVLRVLPELRLPNSQPYQMPSHCPECGSTLVRPVGE 423

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                 A  RC    +C A     + H+ SRDA +I GLG++ +    ++      I   
Sbjct: 424 ------AVTRCVNS-SCPAILRGSVVHWASRDALDIRGLGEKIVSLLVEN----GLITSI 472

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
            D++ L         K+  +   G  S   L ++I   ++ S  R ++ LGIR+VG   A
Sbjct: 473 TDLYQLTPE------KVAALDRMGTKSAQKLINAIEGSKHQSWSRVLYGLGIRYVGNVTA 526

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           + L   + S +  +Q              +L  V  VG+ IAQ++ ++++   N   +E 
Sbjct: 527 KLLTDNFPSVEVLSQA----------SVPTLASVYGVGEEIAQSVFDWFKIAENQTLIEQ 576

Query: 628 LLKEVSPSIGRHEKNVS-----SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
           L            + VS      ++  K  V TGTL  ++R++A+  + + G  V+  +S
Sbjct: 577 LKIAGLQLENIASQAVSLTAASEKVAGKTFVLTGTLPTLKRNEAKALIEKAGGKVTGSIS 636

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            KTD ++VG+  GSKL KAQ+LG+  ++E   L  L
Sbjct: 637 SKTDYLVVGEEAGSKLAKAQELGITQLSEADLLKFL 672


>gi|268323600|emb|CBH37188.1| DNA ligase [uncultured archaeon]
          Length = 667

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 234/701 (33%), Positives = 389/701 (55%), Gaps = 49/701 (6%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L ++I YH+  YY   +P I D+EYD L    + +   +P+L     P+ P  +IG 
Sbjct: 14  IAQLREKIHYHNYRYYVLDEPEISDAEYDRLFVELEELERKYPELI---TPDSPTQRIGA 70

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +         H IP LSL  +     +R F  R+ R    +    I + +EPKIDG  + 
Sbjct: 71  KPVAEFGTYKHRIPMLSLNSVNTEVAVRDFDERVRRMLGVE---EIEYVVEPKIDGLAME 127

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YE G F+  + RGDG +GE+++  ++ + T+P  +      ++EVRGEV++  + F  
Sbjct: 128 LVYENGVFIVGSTRGDGKTGENITQNLKTVKTLPLRILSETAPLLEVRGEVFMPVSKFKE 187

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           LND + A G + +ANPRNAA+G +R+L+     +R L+FF +G+G+T       Q+E+L 
Sbjct: 188 LNDLLGAKGDRMFANPRNAAAGSVRQLDSRVTASRPLDFFAYGIGRTEGKTFSTQWEVLM 247

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +  +GF V+  +R+   F  ++ Y++E+K  R  L Y+IDG+V KV+    Q++LG  +
Sbjct: 248 YLHKIGFKVSPLIRRFKVFEDVIKYHDEVKEKRDELDYEIDGIVVKVNGIEQQERLGLIS 307

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           RSPRW I++KF  ++  T + DI +Q+GRTG LTPVA L PV I G  ++ ATLHNE+ +
Sbjct: 308 RSPRWAIAYKFPAREEFTTVNDIVVQVGRTGALTPVAILAPVQISGVTVSRATLHNENEL 367

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           +            +D+R+GD V+V+RAG+VIP+VV +I ++R    + F  P  CPIC +
Sbjct: 368 RR-----------KDVRIGDTVVVERAGDVIPEVVSVIKSKRTGAEKEFRMPGRCPICGA 416

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            V+++            RC G  +CSAQ  E +KHF S  A NI+GLG++ +      + 
Sbjct: 417 DVLKE--------GPIVRCIGV-SCSAQLKEWIKHFASLRAMNIDGLGEKVIAQLCDRK- 466

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               +   AD+F L +R      ++  +   GD S  N+ +++ K ++ +L R I++LGI
Sbjct: 467 ---MVSDAADLFFLTKR------ELLKLDRMGDKSARNILNALEKSKHTTLSRLIYALGI 517

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           RHVGA  A  LA  +   ++               +  L+ +P +G  +A++I+ F++  
Sbjct: 518 RHVGAHTASLLADNFSELESLRNA----------SYDDLVHIPEIGPEVAKSIILFFKQG 567

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
                +  L +       + +    + +E K  VFTG +  + R +A+  V +LG  V++
Sbjct: 568 GTKDLLGKLERAGVW-YEKKKAAAEARLEGKTFVFTGRIS-MPREEAKSLVERLGGKVAS 625

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +S+KTD ++ G+  GSK EKA++LGVKI+ E +F  +++ 
Sbjct: 626 SVSKKTDYVVAGEEAGSKREKAEKLGVKIIGESEFGEIIRD 666


>gi|167752039|ref|ZP_02424166.1| hypothetical protein ALIPUT_00281 [Alistipes putredinis DSM 17216]
 gi|167660280|gb|EDS04410.1| hypothetical protein ALIPUT_00281 [Alistipes putredinis DSM 17216]
          Length = 712

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 223/709 (31%), Positives = 352/709 (49%), Gaps = 47/709 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            R+++  L + + YH+  YY  + P I D E+D L R    +  A P+ A   DPN P  
Sbjct: 12  IREKIEELRRTLDYHNHKYYVENSPEISDREFDVLMRELQELEAAHPEYA---DPNSPTA 68

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++      V H  P LSL   +++++L +FI RI +           F  E K DG
Sbjct: 69  RVGSDLTTEFQSVEHRFPMLSLGNTYSLDELHEFIGRIEKELG-----QTEFVCELKFDG 123

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195
           T I++ YE G  + A  RGDG  G+DV+A IR I TIP  L   + P+  E+RGEV +  
Sbjct: 124 TAISLTYEHGALLRAVTRGDGTRGDDVTANIRTIRTIPLHLQGGDYPDFFEIRGEVLMPY 183

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
             F  LN E    G    ANPRNAA+G L++ +   + +             ++     +
Sbjct: 184 ASFDRLNREREENGEPLLANPRNAAAGTLKQQSSAVVAQRGLDCTLYQLAGDDLPCTTHW 243

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E ++K    GF V++ +R   +   I  Y       R  LP+  DG+V KV+ ++L+++L
Sbjct: 244 ECMRKASEWGFNVSDKMRICRSQAEIDDYIAFWDEERRKLPFATDGVVIKVNSYTLRREL 303

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A++PRW ++ KF  +QA TRL  +D Q+GRTG +TPVA L+PV + G  +  ATLHN
Sbjct: 304 GFTAKAPRWAVAFKFKAEQALTRLESVDFQVGRTGAITPVANLDPVQLAGTTVKRATLHN 363

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            + I  L           DIRVGD V V++ GE+IPK+  + +  R  D++PF + + CP
Sbjct: 364 AEQIALL-----------DIRVGDMVYVEKGGEIIPKITGVDLAARPADSRPFQYITRCP 412

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +V+            H C     C  Q L R+ HF+ R A +IEGLG++ ++  F
Sbjct: 413 ECGTPLVKYEGESK------HYCPNQSHCRPQILGRIIHFIRRKAMDIEGLGEETVELLF 466

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           ++      +   AD++ L+  Q         +   G+ S  N+  SI     +  +R +F
Sbjct: 467 EN----GLLHDIADLYDLRAEQL------ACLPRLGEKSAENIIRSIRGSVEVPFQRVLF 516

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG   A+ LA ++ +                     LI    VG  IA AI+++
Sbjct: 517 ALGIRFVGETTAKYLAAHFRTLDAVMHATR----------EELIEADEVGGKIADAIIDY 566

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           + +  N+  +E L K    +   H+   S  +  K  V TG      R + +E +   G 
Sbjct: 567 FADAENLRIIERLRKAGLQTEAAHKALESESLAGKNFVITGRFSGHSRDELKELIEAHGG 626

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
              A +S   D ++ G+  G +KL+KA +LGV++++EE+ L ++    T
Sbjct: 627 KNLAAVSANVDFLVAGEKIGPAKLQKATKLGVRLISEEELLAMIASGGT 675


>gi|255021565|ref|ZP_05293608.1| DNA ligase [Acidithiobacillus caldus ATCC 51756]
 gi|254968953|gb|EET26472.1| DNA ligase [Acidithiobacillus caldus ATCC 51756]
          Length = 659

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 244/701 (34%), Positives = 383/701 (54%), Gaps = 45/701 (6%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
            +   +  YY+   P++ D+EYDAL R   A+  A P+L  +   + P  ++G     + 
Sbjct: 2   LLEAANRAYYRDDAPVMSDAEYDALLRELRALEDAHPELRVA---DSPTQRVGAAPVSAF 58

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
             V + IP  SL+ +++ E+ R +  R+ R   +  +  +  + EPK DG  + +RYE G
Sbjct: 59  GAVHYRIPMTSLDNVFSEEEFRDWWERLRRALPEVSNPVL--SGEPKFDGLSVNLRYEGG 116

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEM 205
           + V A  RGDG  GEDV+  +R I  +P  L  +  PE+IE+RGEV +    F  LN E 
Sbjct: 117 RLVRAGTRGDGVEGEDVTHNVRTIHNVPLQLQGSGWPELIELRGEVVLPVAAFRRLNRER 176

Query: 206 IAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
              G  P+ANPRNAA+G LR+L+P     R L FF  G G+ SE        +LQ+    
Sbjct: 177 ERRGEAPFANPRNAAAGSLRQLDPRITARRPLAFFPWGFGECSEPLGDSHVHILQRFATW 236

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           GF V   +R  +     ++Y+ ++ + R ++P++IDGLV+KVD+ +L+++LG  AR+PRW
Sbjct: 237 GFSVTEFLRPIHGLDEALAYHADLAARRESMPFEIDGLVFKVDDLALRERLGFTARAPRW 296

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
            I+ KF   +AST + DI   +GRTG++TPVA+L+PV++ G +++ A+LHNED ++    
Sbjct: 297 AIAWKFPAHEASTLVEDIVASVGRTGVVTPVAQLQPVSVAGVMVSRASLHNEDEVRR--- 353

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                   +D+RVGD VLV+RAG+VIP++V ++ + R   +QP+  P+ CP+C S ++R 
Sbjct: 354 --------KDVRVGDTVLVRRAGDVIPEIVTVLRDRRPAASQPWRMPTRCPVCGSEILRL 405

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
            N        AHRCTGGL C AQ++  + HF SR A +I GLG++ +            +
Sbjct: 406 PNE------VAHRCTGGLYCPAQRMGAILHFASRRAMDIRGLGEKLVAQLVAQ----GLV 455

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           +  AD++ L R        +  +   GD S   L D I   R     RF+++LGI  VG 
Sbjct: 456 KTVADLYHLDRD------TLLALPRMGDRSAQKLLDEIAGSRQTEFARFLYALGIHQVGE 509

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             A++LA+++   +                   L  VP VG ++A+AI+ F+    N   
Sbjct: 510 STAKALAQHFGDLETLMA----------VSAEDLQEVPDVGPVVAEAILHFFAQTHNREV 559

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
           ++ALL        +  K     ++ K+LV TG+L  + R  A+E +   G  V + +S +
Sbjct: 560 IQALLAAGV-HWPKVRKREGGVLQGKRLVLTGSLPHLSREAAKEKIEAAGGKVVSAVSAQ 618

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            D +IVG+ PGSKL KAQ LG+  ++E  FL LL +    +
Sbjct: 619 VDYVIVGEAPGSKLAKAQALGIPQLDEAAFLALLAEGGEDV 659


>gi|264678823|ref|YP_003278730.1| DNA ligase, NAD-dependent [Comamonas testosteroni CNB-2]
 gi|262209336|gb|ACY33434.1| DNA ligase, NAD-dependent [Comamonas testosteroni CNB-2]
          Length = 708

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 254/728 (34%), Positives = 386/728 (53%), Gaps = 52/728 (7%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           ++    I A   E    ++++L  ++      YY    P + D EYD + ++ +A+  A+
Sbjct: 15  QKPSTAINAGVPESVTSKVAALRAQLHQWAHEYYVLDTPTVPDGEYDRVYQQLEALEGAY 74

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQK 120
           P L     P+ P  ++ G +   L  V H++P LS++   + E      F  R+ +    
Sbjct: 75  PALV---TPDSPTQRVIGAVLDGLTPVRHAVPMLSIQTETDNEATGAIAFDQRVRKELGL 131

Query: 121 KDDNS-IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
            +  + I +  EPK DG  + +RYE G+ V A  RGDG  GEDV+  IR I  IP  LS 
Sbjct: 132 DESAAAIEYVAEPKFDGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRQIPLTLSA 191

Query: 180 NI--PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYL 236
               P ++EVRGEV+++K D   LN    A G K +ANPRNAA+G +R+L+      R L
Sbjct: 192 GRDVPPVVEVRGEVHMAKADLDKLNARQQAAGAKTFANPRNAAAGSVRQLDSNIAAQRPL 251

Query: 237 NFFVHGLGKTSEIF-----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
           +FF +GLG+ +            Y MLQ ++  GFPV   V  A     +V+++  + + 
Sbjct: 252 SFFAYGLGEITPPQQGGPDFGTHYAMLQTLKSWGFPVAPQVSIALGASELVAFHERIGAE 311

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R+ LPY+IDG+VYKV+  +LQ+QLG ++R PRW ++HK+  ++  T +  ID+Q+GRTG 
Sbjct: 312 RANLPYEIDGVVYKVNSLALQRQLGFKSREPRWAVAHKYPAQEMPTLMEAIDVQVGRTGK 371

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           LTPVARL PV +GG ++TNATL N   I+            + +RVGD+V+V+RAG+VIP
Sbjct: 372 LTPVARLAPVQVGGVVVTNATLSNLFDIRK-----------KGVRVGDQVIVRRAGDVIP 420

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +  ER      F  P  CPIC S VVR+         A HRCTGGL C AQ+ E 
Sbjct: 421 EVVGRVPGERPAYVPNFRMPKTCPICGSEVVREKGE------ANHRCTGGLFCGAQRKEA 474

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           + HF  R A +IEGLG + +D    ++     +R+  D++ L        + +  +    
Sbjct: 475 ILHFAHRRAMDIEGLGDKLVDQLVDAQ----VVRVLPDLYRL------GLSSLAALDRMA 524

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  N+  ++ K ++ +L+RF+F LGIR+VG   AR LAK++                 
Sbjct: 525 EKSAQNVLAALEKSKSTTLQRFLFGLGIRNVGESTARDLAKHFGKLDAIMDA-------- 576

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENK 650
                 L++V  VG ++A +I  F+  P N   VE L         G   +     +   
Sbjct: 577 --SVEELLQVKDVGPVVADSIHTFFAQPHNREVVEQLRACGVHWEEGEPAEKAPQILAGL 634

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TGTL  + R  A++ +   GA VS  +S+KT  ++ G   GSKL KA++LGV +++
Sbjct: 635 TVVLTGTLPTLGRDAAKDMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVPVLD 694

Query: 711 EEQFLFLL 718
           E   L LL
Sbjct: 695 EAGMLALL 702


>gi|299529801|ref|ZP_07043234.1| DNA ligase, NAD-dependent [Comamonas testosteroni S44]
 gi|298722215|gb|EFI63139.1| DNA ligase, NAD-dependent [Comamonas testosteroni S44]
          Length = 708

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 254/728 (34%), Positives = 386/728 (53%), Gaps = 52/728 (7%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           ++    I A   E    ++++L  ++      YY    P + D EYD + ++ +A+  A+
Sbjct: 15  QKPSTAINAGVPESVTSKVAALRAQLHQWAHEYYVLDTPTVPDGEYDRVYQQLEALEGAY 74

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQK 120
           P L     P+ P  ++ G +   L  V H++P LS++   + E      F  R+ +    
Sbjct: 75  PALV---TPDSPTQRVIGAVLDGLTPVRHAVPMLSIQTETDNEATGAIAFDQRVRKELGL 131

Query: 121 KDDNS-IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
            +  + I +  EPK DG  + +RYE G+ V A  RGDG  GEDV+  IR I  IP  LS 
Sbjct: 132 DESAAAIEYVAEPKFDGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRQIPLTLSA 191

Query: 180 NI--PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYL 236
               P ++EVRGEV+++K D   LN    A G K +ANPRNAA+G +R+L+      R L
Sbjct: 192 GRDVPPVVEVRGEVHMAKADLDKLNARQQAAGAKTFANPRNAAAGSVRQLDSNIAAQRPL 251

Query: 237 NFFVHGLGKTSEI-----FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
           +FF +GLG+ +            Y MLQ ++  GFPV   V  A     +V+++  + + 
Sbjct: 252 SFFAYGLGEITPPEQGGPDFGTHYAMLQTLKSWGFPVAPQVSIALGASELVAFHERIGAE 311

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R+ LPY+IDG+VYKV+  +LQ+QLG ++R PRW ++HK+  ++  T +  ID+Q+GRTG 
Sbjct: 312 RANLPYEIDGVVYKVNSLALQRQLGFKSREPRWAVAHKYPAQEMPTLMEAIDVQVGRTGK 371

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           LTPVARL PV +GG ++TNATL N   I+            + +RVGD+V+V+RAG+VIP
Sbjct: 372 LTPVARLAPVQVGGVVVTNATLSNLFDIRK-----------KGVRVGDQVIVRRAGDVIP 420

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV  +  ER      F  P  CPIC S VVR+         A HRCTGGL C AQ+ E 
Sbjct: 421 EVVGRVPGERPAYVPNFRMPKTCPICGSEVVREKGE------ANHRCTGGLFCGAQRKEA 474

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           + HF  R A +IEGLG + +D    ++     +R+  D++ L        + +  +    
Sbjct: 475 ILHFAHRRAMDIEGLGDKLVDQLVDAQ----VVRVLPDLYRL------GLSSLAALDRMA 524

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           + S  N+  ++ K ++ +L+RF+F LGIR+VG   AR LAK++                 
Sbjct: 525 EKSAQNVLAALEKSKSTTLQRFLFGLGIRNVGESTARDLAKHFGKLDAIMDA-------- 576

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENK 650
                 L++V  VG ++A +I  F+  P N   VE L         G   +     +   
Sbjct: 577 --SVEELLQVKDVGPVVADSIHTFFAQPHNREVVEQLRACGVHWEEGEPAEKAPQILAGL 634

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TGTL  + R  A++ +   GA VS  +S+KT  ++ G   GSKL KA++LGV +++
Sbjct: 635 TVVLTGTLPTLGRDAAKDMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVPVLD 694

Query: 711 EEQFLFLL 718
           E   L LL
Sbjct: 695 EAGMLALL 702


>gi|326381521|ref|ZP_08203215.1| NAD-dependent DNA ligase LigA [Gordonia neofelifaecis NRRL B-59395]
 gi|326199768|gb|EGD56948.1| NAD-dependent DNA ligase LigA [Gordonia neofelifaecis NRRL B-59395]
          Length = 692

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 215/718 (29%), Positives = 348/718 (48%), Gaps = 41/718 (5%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            +E + L +E+  H   YY    P+I D E+D L RR  A+    P+LA +   + P   
Sbjct: 12  AREWALLAEEVRGHQFRYYVQDAPVISDGEFDTLLRRLQALEDEHPELAVA---DSPTKL 68

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG  +     V H    +SL+ +++ +++R +++R              F  E KIDG 
Sbjct: 69  VGGGFSTDFTSVDHLERMMSLDNVFDHDEMRTWVSRTEAEIG----AGTEFLCELKIDGV 124

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYIS 194
            + + YE GK V    RGDG +GEDV+   R I  +P VL      +P ++EVRGEV+  
Sbjct: 125 ALALVYENGKLVRGVTRGDGRTGEDVTLNARTITDVPHVLDDAVRPVPALLEVRGEVFFR 184

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
             DF  LN  ++  G+ P+ANPRN+A+G LR+ NP     R+L    HG+GK      + 
Sbjct: 185 VEDFQNLNASLVEDGKAPFANPRNSAAGSLRQKNPQITAKRHLRMICHGIGKIEGWRPES 244

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            ++    +   G PV+   R+      IV   +     R ++ ++IDGLV KVD+ S Q+
Sbjct: 245 LHDAYLALGEWGLPVSKHTRKVTGAGEIVKTIDYWGENRHSVEHEIDGLVVKVDDVSQQR 304

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +R+PRW I++K+  ++ +T+LLDI + +GRTG +TP A +EPV + G+ +  ATL
Sbjct: 305 RLGATSRAPRWAIAYKYPPEEVTTKLLDIMVGVGRTGRVTPWALMEPVLVAGSTVARATL 364

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN   +K            + + +GD + +++AG+VIP+V+  +V  R    + F  P+ 
Sbjct: 365 HNAFEVKR-----------KGVLIGDTITIRKAGDVIPEVLGPVVELRDGTEREFVMPTN 413

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + +         +     RC    +C  Q  ERL +   R AF+IE LG +    
Sbjct: 414 CPECGTELA-----PAKEGDKDIRCPNQRSCPGQLRERLFYLAGRGAFDIEALGYEGAQA 468

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
              S      +    D+F+L       T       G    +     D+++K +++ L R 
Sbjct: 469 LLSS----GVLADEGDLFSLTADDLIKTDLYTTKAGALSANGKRFLDNLDKAKHVPLWRV 524

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I +L IRHVG   AR+LA  +   +                   L +V  +G   A ++ 
Sbjct: 525 IVALSIRHVGPTPARALATAFGDLEAIQAA----------SVEDLAQVDGLGPTRAASVH 574

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +++    +   V              + ++   +E K +V TG+L    R  A+E +   
Sbjct: 575 DWFAVDWHREIVAKWRAAGVSMADERDDSIERTLEGKTIVVTGSLVDFSRDGAKEAIISR 634

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
           G   S  +S+KTD ++VG+  GSK +KA+QLGV I++E+ F  LL           +D
Sbjct: 635 GGKASGSVSKKTDYVVVGEAAGSKADKAEQLGVPILDEDGFKELLATGAVAGATPTED 692


>gi|47092911|ref|ZP_00230693.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 4b H7858]
 gi|254825997|ref|ZP_05230998.1| DNA ligase [Listeria monocytogenes FSL J1-194]
 gi|254853668|ref|ZP_05243016.1| DNA ligase [Listeria monocytogenes FSL R2-503]
 gi|254932796|ref|ZP_05266155.1| DNA ligase [Listeria monocytogenes HPB2262]
 gi|300765954|ref|ZP_07075926.1| DNA ligase, NAD-dependent [Listeria monocytogenes FSL N1-017]
 gi|47018737|gb|EAL09488.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 4b H7858]
 gi|258607047|gb|EEW19655.1| DNA ligase [Listeria monocytogenes FSL R2-503]
 gi|293584349|gb|EFF96381.1| DNA ligase [Listeria monocytogenes HPB2262]
 gi|293595236|gb|EFG02997.1| DNA ligase [Listeria monocytogenes FSL J1-194]
 gi|300513340|gb|EFK40415.1| DNA ligase, NAD-dependent [Listeria monocytogenes FSL N1-017]
 gi|328466510|gb|EGF37653.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 1816]
 gi|328473899|gb|EGF44721.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 220]
 gi|332312198|gb|EGJ25293.1| DNA ligase [Listeria monocytogenes str. Scott A]
          Length = 671

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 367/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N EDL  F  RI      K  + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRD----KVGDDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+     +R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 NTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D           +   +DIR+GD VL+K+AG++IP+V+  I  +R    +PF  P  CP 
Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPA 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 Q----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIQASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNL----------KVADKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +          K             K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|260063119|ref|YP_003196199.1| DNA ligase [Robiginitalea biformata HTCC2501]
 gi|88784688|gb|EAR15858.1| DNA ligase [Robiginitalea biformata HTCC2501]
          Length = 673

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 223/714 (31%), Positives = 356/714 (49%), Gaps = 46/714 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++     +++ +L  E+  H+  YY   +P+I D ++D   +    +    P+     
Sbjct: 3   EKVNKRDIAEKIQALRDELRDHNYRYYVLDEPVISDYDFDMKLKALQDLEKQHPEF---Y 59

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
           DP  P  ++GG +  +   V H  P  SL+  +++E+LR++  RI R      D  + FT
Sbjct: 60  DPASPTQRVGGAITKNFETVVHDYPMYSLDNSYSVEELREWEKRIQRVLG---DVPVTFT 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E K DG  I++ Y+ G  + A  RGDG  G+DV+  +R I +IP  L  + P   ++RG
Sbjct: 117 CELKYDGASISLTYQDGALLRAVTRGDGTQGDDVTTNVRTIRSIPLRLQGDYPNRFDIRG 176

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+ +    F  +N E +  G  PY NPRN ASG L+  + + +       +       ++
Sbjct: 177 EIVLPLEGFARMNRERVENGEDPYMNPRNTASGSLKLQDSSIVAERPLDCLLYGMAGRDL 236

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            A   +E+L   R LGF V +  +       +V+Y     S R  LPY+ DG+V KV+  
Sbjct: 237 GADSHFEILGLARKLGFKVPDTAKLCKNIDEVVAYLEYWDSHRLELPYETDGVVVKVNSL 296

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q++LG  A+SPRW +++KF  +QA+TRL  I  Q+GRTG +TPVA LEPV + G  + 
Sbjct: 297 QQQEELGYTAKSPRWAMAYKFKSEQAATRLERITYQVGRTGAITPVANLEPVLLAGTTVK 356

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN D I  L           D+R GD V V++ GE+IPK+  +  ++R  ++ P +
Sbjct: 357 RASLHNADQIAKL-----------DVREGDTVYVEKGGEIIPKITGVDFSKRPENSAPTT 405

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           + S CP C + +VR+         A H C     C  Q   R++HF+SR A +IEGLG +
Sbjct: 406 YISACPECGTELVRNPGE------AQHFCPNDTGCPPQITGRIQHFISRKAMDIEGLGSE 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++  FK       I   AD++TL          +  +    + S  NL + +   R + 
Sbjct: 460 TVELLFKE----GLIGDYADLYTLTTDD------LLPLERMAEKSAANLVEGVAASRKVP 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ER +F+LGIR+VG  +A+ LA+ Y +                     L +V  +G  IA
Sbjct: 510 FERVLFALGIRYVGETVAKKLARAYKNIDALMAA----------SADELQQVDEIGQRIA 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQ 667
            ++VEF+ +P N   VE L           E+          K  V +G  + I R++ +
Sbjct: 560 GSVVEFFSDPVNRERVEKLKGHGLQFSLSEEQLRGQTDLFRGKTFVVSGVFESIGRNELK 619

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + +   G  V++ +S +T+ ++ G N G SK EKA + GV I++E QFL +L  
Sbjct: 620 KRIEDNGGKVTSSVSARTNFLVAGANMGPSKREKADKNGVPIISETQFLEMLGD 673


>gi|157804104|ref|YP_001492653.1| NAD-dependent DNA ligase LigA [Rickettsia canadensis str. McKiel]
 gi|166216233|sp|A8EZT5|DNLJ_RICCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157785367|gb|ABV73868.1| DNA ligase [Rickettsia canadensis str. McKiel]
          Length = 689

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 268/709 (37%), Positives = 417/709 (58%), Gaps = 29/709 (4%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S ++A+K L  L  +I  ++  YY  +  ++ D+EYD L      +   FP L      
Sbjct: 7   ISEKEAKKLLKELADKIERYNHAYYIENNHLVSDAEYDQLFNTNLKLEQKFPHLILE--- 63

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  K+G ++     KVTH  P LSL  +++ +D++ F+ RI  F +  +   I    E
Sbjct: 64  NSPSKKVGAKIANKFAKVTHQAPMLSLSNVFDEQDVKDFVDRIKNFLRLNEFAPI--FCE 121

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG   +  Y+ G     A RGDG+ GED++A I+ I   P  ++   PE +EVRGE+
Sbjct: 122 PKIDGLSFSAIYKNGLLTIGATRGDGYIGEDMTANIKTIKNFPHKINNA-PEFLEVRGEI 180

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           YI K DF  LN E    GR  +ANPRNAA+G LR+L+ +    R L +FV+  G T +  
Sbjct: 181 YIEKQDFFNLNKEQEEQGRDKFANPRNAAAGSLRQLDSSVTAKRPLKYFVYSGGATEQNI 240

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A  Q E+L+K++  GF VN   + A++   I ++Y  +K+ R  L Y+IDG+VYK+++F+
Sbjct: 241 ASSQNELLKKLKEFGFRVNEISKLADSEEEIFAFYEYLKTNRENLSYEIDGVVYKLNDFA 300

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ ++G  AR+PR+  +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  ++ 
Sbjct: 301 LQNRMGFIARAPRFATAHKFPAIVGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSR 360

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN   I             +D+R+ D V ++RAG+VIP+++ + + +R  DA  F+ 
Sbjct: 361 ATLHNFQEIIR-----------KDVRIRDYVFLQRAGDVIPQIIGVDIGKRSTDATTFNT 409

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P FCP C S++               RC   L C AQ  ER++HFVS++A +IEGLG++Q
Sbjct: 410 PLFCPSCNSKLHYIPE------DIIIRCDNVLNCPAQNYERIRHFVSKNAMDIEGLGRKQ 463

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++F          I  P DIF L+ + + S TK+EN+ G+G  SV NL+ +I + RN+SL
Sbjct: 464 VEFLIDK----GLISNPLDIFLLKEKNEASLTKLENMDGWGRKSVENLFKNIEESRNVSL 519

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI++LGIRH+G + A+ LA+ + SY NF  +I  +  ++++ +  L  +  +GD I  
Sbjct: 520 PRFIYALGIRHIGEQNAKLLAREFESYNNFISQIELLSKNDSNIYQKLNNLEGIGDKILV 579

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I+ F+    NI  ++ L + ++    +  K  SS +  K +VFTG+L    R +A+   
Sbjct: 580 DIINFFDVKENIELIKKLGEVLNIEDYKETKEHSS-LTGKIVVFTGSLPTTSRVEAKAMA 638

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +LGA V+  +S  TD++I G + GSKL+KA++LG+KI++EE++L ++ 
Sbjct: 639 EKLGAKVAVSVSSNTDLVIAGVDAGSKLKKAKELGIKIIDEEEWLTIVN 687


>gi|78214056|ref|YP_382835.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9605]
 gi|123729638|sp|Q3AGK2|DNLJ_SYNSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78198515|gb|ABB36280.1| DNA ligase, NAD-dependent [Synechococcus sp. CC9605]
          Length = 680

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 218/717 (30%), Positives = 345/717 (48%), Gaps = 49/717 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    +  + L   ++     YY    P + D+ YD L R    +    P L R   P+ 
Sbjct: 1   MADPHERAAELRHLLNRAGHAYYVLDAPEMEDTVYDRLYRELLELEQNDPGLQR---PDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG        V H +  LSL+  +N +DLR +  R+ +   +  D+ +    E K
Sbjct: 58  PTQRVGGAPAEGFTSVEHRVGMLSLDNAFNRDDLRAWHERLLKVLDRPSDSRLPLVGELK 117

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVY 192
           IDG  + + Y  G    AA RGDG  GE+++A +R I +IP      N PE +EVRGE +
Sbjct: 118 IDGNALALSYRNGVLERAATRGDGSRGEEITANVRTISSIPLRLQIENPPEWVEVRGEAF 177

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251
           I    F A+N E        +ANPRNA +G LR+L+P     R L+FF + L    +   
Sbjct: 178 IPDATFAAINAEREQRDEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPGDAQP 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            GQ+  L+ +   GF VN           I  + +  +  R  LPY  DG+V K+D+  L
Sbjct: 238 PGQWAALEWLNSAGFRVNPNRELCGDLAAIQRFCDHWEQGRHDLPYATDGVVVKLDDLQL 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q + G   ++PRW ++ K+  ++A TRLL +  Q+GRTG +TPVA  E V + G  ++ A
Sbjct: 298 QDEAGFTQKAPRWAVALKYPAEEAPTRLLRVGAQVGRTGAITPVAEFEAVPLAGTSVSRA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L           D+ +GD ++V++AGE+IP+VV ++   R  DA P   P
Sbjct: 358 TLHNADRIAEL-----------DLHLGDTIVVRKAGEIIPEVVRVLPELRPSDATPVQLP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C S +VR+ +       AA RC    +C A     L+H+VS+ A +++GLG + +
Sbjct: 407 QQCPECGSNLVREGDE------AATRCVNS-SCPAILRGGLRHWVSKGALDVDGLGSKLI 459

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +           +   AD++ L      S      +   GD S TNL +++   +     
Sbjct: 460 EQLVDR----GLVGSLADLYRLDAALLAS------LDRMGDKSATNLVEALKASKQQPWH 509

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LGIRH+G   A++LA  + S  + A           +    +  +  +G  I+ +
Sbjct: 510 RQLYGLGIRHIGEVNAKALAAAFFSIDSLATAAL-------EAPEQIAELHGIGPEISAS 562

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEK---------NVSSEIENKKLVFTGTLQKIQ 662
           + ++   P N   ++ L            +         +    ++ K LV TGTL  + 
Sbjct: 563 LGQWLHTPANQQLLQDLRSVGFSLEASTSEQEAASQAGADADGVLQGKTLVLTGTLPNLS 622

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R +A+  +   G  VS  +S+KTD ++ G+  GSKL KA+ LGV +++E     LLQ
Sbjct: 623 RSEAKALIETAGGKVSGSVSKKTDYLVAGEAAGSKLTKAESLGVTVLSEADLTALLQ 679


>gi|229055132|ref|ZP_04195560.1| DNA ligase [Bacillus cereus AH603]
 gi|228721208|gb|EEL72737.1| DNA ligase [Bacillus cereus AH603]
          Length = 669

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 245/715 (34%), Positives = 388/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  +K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEITKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R++   Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPYRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 IQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LELERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKTINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|224025865|ref|ZP_03644231.1| hypothetical protein BACCOPRO_02607 [Bacteroides coprophilus DSM
           18228]
 gi|224019101|gb|EEF77099.1| hypothetical protein BACCOPRO_02607 [Bacteroides coprophilus DSM
           18228]
          Length = 665

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 224/705 (31%), Positives = 354/705 (50%), Gaps = 48/705 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L +E+  H+  YY  + P+I D E+D L R    +    P+     DP  P  ++
Sbjct: 5   ERIDQLREELHRHNHNYYILNAPVISDQEFDKLMRELQDLEARHPE---HFDPTSPSMRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G ++N    +V H  P LSL   ++ +++ +F  R+ +      +       E K DGT 
Sbjct: 62  GSDINKDFVQVEHKYPMLSLGNTYSEDEVTEFYERVRKSL----NEDFEICCEMKFDGTS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197
           I++ YE G+ + A  RGDG  G+DV+  ++ I +IP VL     P+  E+RGE+ +    
Sbjct: 118 ISLTYEDGRLIRAVTRGDGVRGDDVTDNVKTIRSIPLVLHGTGYPKSFEIRGEILMPWTV 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  LN E        +ANPRNAASG L+  N   +                +   G YE 
Sbjct: 178 FEELNRERELREEPLFANPRNAASGTLKSQNSAVVAARRLDAYLYYLLGDNLPCDGHYEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           LQ+    GF ++   R+ ++   I  +       R  LP   DG+V KV+    Q+ LG 
Sbjct: 238 LQEAEKWGFKISKITRKVHSLQEIFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGY 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++KF  +QA TRLL +  Q+GRTG +TPVA LEPV + G ++  A+LHN D
Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLLKVTYQVGRTGAVTPVANLEPVQLSGTVVRRASLHNAD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I  L           D+ +GD V V++ GE+IPK+  + +  R   ++  +F + CP C
Sbjct: 358 IIASL-----------DLHLGDNVYVEKGGEIIPKITGVDLASRPAGSEKVTFITHCPEC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S++VR  +       AAH C     C  Q   +++HF+SR A NIEGLG + +D F++ 
Sbjct: 407 GSKLVRYEDE------AAHYCPNETGCPPQIKGKIEHFISRRAMNIEGLGPETVDQFYQE 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I   AD++TL++           +   GD S  N+   I K   +  ER +F+L
Sbjct: 461 ----GLIHDVADLYTLRKEDIC------RLERMGDKSAENIIQGIRKSTEVPYERVLFAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG  +A+ +AK + S    AQ               LI V  +G+ IAQ+I  ++ 
Sbjct: 511 GIRFVGETVAKKVAKAFTSIDALAQAT----------LDDLIHVDEIGEKIAQSIRLYFS 560

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           + +N   +E L +         +       +++ + +V +G   +  R + +E + + G 
Sbjct: 561 DEKNRSLIERLQQAGLQLAAGEKDLSDHTDKLQGQSIVISGVFARHSRDEYKELIEKHGG 620

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
                +SRKT  I+ G+N G SKLEKA++LG++I+NEE+FL ++ 
Sbjct: 621 KNVGSISRKTSFILAGENMGPSKLEKAEKLGIRIVNEEEFLKMID 665


>gi|226224361|ref|YP_002758468.1| DNA ligase [Listeria monocytogenes Clip81459]
 gi|254781359|sp|C1KW57|DNLJ_LISMC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225876823|emb|CAS05532.1| Putative DNA ligase [Listeria monocytogenes serotype 4b str. CLIP
           80459]
          Length = 671

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 367/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N EDL  F  RI      K  + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRD----KVGDDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+     +R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 NTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D           +   +DIR+GD VL+K+AG++IP+V+  I  +R    +PF  P  CP 
Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPA 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 Q----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNL----------KVADKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +          K             K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|108798849|ref|YP_639046.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. MCS]
 gi|119867964|ref|YP_937916.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. KMS]
 gi|126434449|ref|YP_001070140.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. JLS]
 gi|123369452|sp|Q1BAU4|DNLJ_MYCSS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216212|sp|A3PXM2|DNLJ_MYCSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216213|sp|A1UE68|DNLJ_MYCSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|108769268|gb|ABG07990.1| DNA ligase, NAD-dependent [Mycobacterium sp. MCS]
 gi|119694053|gb|ABL91126.1| DNA ligase, NAD-dependent [Mycobacterium sp. KMS]
 gi|126234249|gb|ABN97649.1| DNA ligase, NAD-dependent [Mycobacterium sp. JLS]
          Length = 701

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 216/726 (29%), Positives = 351/726 (48%), Gaps = 45/726 (6%)

Query: 2   KKRQLIPIEALSIEQA--RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59
                 P E  +  +A  R    +L  E+  H   YY    P+I D+++D L ++ +A+ 
Sbjct: 5   STPDAGPQEQATEAEAELRHRWQALADEVRDHQFRYYVRDAPVISDADFDKLFQQLEALE 64

Query: 60  HAFPDLARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
              P+L     P+ P   +GG           H    LSL+ ++N+++L  + +R+    
Sbjct: 65  AEHPEL---RAPDSPTQLVGGAGFATDFTPAEHLERMLSLDDVFNVDELTAWSSRVR--- 118

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
             +  +   +  E K+DG  + + Y  G+   AA RGDG  GEDV+   R +  +P  L+
Sbjct: 119 -AEVGDDAAYLCELKVDGLALALVYRDGRLERAATRGDGRVGEDVTLNARTLDDVPERLT 177

Query: 179 ----LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DIT 233
                  P ++EVRGEV+    DF ALN  ++A G+ P+ANPRN+A+G LR+ NP     
Sbjct: 178 PSDEFPHPAVLEVRGEVFFRVADFEALNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTAR 237

Query: 234 RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           R L    HG+G T        +E    +R  G PV++   +      +          R 
Sbjct: 238 RPLRMVCHGIGYTEGFSPTSLHEAYGALRAWGLPVSDHTTRVQGMDAVRERIAYWGEHRH 297

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + ++IDG+V K+D+ +LQ++LG  +R+PRW +++K+  ++A T+LLDI + +GRTG +T
Sbjct: 298 DIEHEIDGVVVKLDQIALQRRLGATSRAPRWAVAYKYPPEEAQTKLLDIRVNVGRTGRVT 357

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           P A +EPV + G+ +  ATLHN   +K            + + +GD V++++AG+VIP+V
Sbjct: 358 PFAYMEPVKVAGSTVGLATLHNASEVKR-----------KGVLIGDTVVIRKAGDVIPEV 406

Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
           +  +V+ R    + F  P+ CP C + +         +  A  RC     C AQ  ER+ 
Sbjct: 407 LGPVVDLRDGTEREFVMPTHCPECGTELA-----PAKEGDADIRCPNSRTCPAQLRERVF 461

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533
           H   R AF+IEGLG +      +    A  I    D+FTL       T       G    
Sbjct: 462 HVAGRGAFDIEGLGYEAAIALLQ----AGVITDEGDLFTLTEDDLLRTELFTTKGGAVSA 517

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           +   L  ++ K +   L R + +L IRHVG   AR+LA  + S     +           
Sbjct: 518 NGRRLLANLGKAKAQPLWRVLVALSIRHVGPTAARALATEFGSLDAIIEASE-------- 569

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653
               L  V  VG  IA A+ E++    +   VE             + +++  +E   +V
Sbjct: 570 --DQLAAVEGVGPTIAAAVKEWFTVDWHCAIVEKWRAAGVRMADERDASIARTLEGLSIV 627

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TG+L    R +A+E +   G   +  +S+KT  ++ GD+PGSK +KA  LGV +++E+ 
Sbjct: 628 VTGSLAGFSRDEAKEAIIARGGKAAGSVSKKTAYVVAGDSPGSKYDKAIDLGVPVLDEDG 687

Query: 714 FLFLLQ 719
           F  LL+
Sbjct: 688 FRNLLE 693


>gi|229009789|ref|ZP_04167009.1| DNA ligase [Bacillus mycoides DSM 2048]
 gi|228751407|gb|EEM01213.1| DNA ligase [Bacillus mycoides DSM 2048]
          Length = 669

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 245/715 (34%), Positives = 389/715 (54%), Gaps = 52/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1   MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +     KVTH  P LSL   +N  DLR F  R++   Q  DD ++ +  E
Sbjct: 58  DSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYICE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RGE 
Sbjct: 115 LKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIPLRLNEEV--TLEARGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E  
Sbjct: 173 YMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKT 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+ +
Sbjct: 233 IPSHSESLDFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDVA 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++  
Sbjct: 293 IQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +  
Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  SL
Sbjct: 455 ITQLFD----ADYIRTFADLYSLTKEQL------LELERFGEKSATNLVQAIENSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +AQ
Sbjct: 505 ERLLFGLGIRHVGAKAARTFAEHFETMDELVKATE----------EELKTINEIGEKMAQ 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R +
Sbjct: 555 SVVTYFDNEDVLELLQQFKEYGVNMAYKGMKIADLQNVESYFAGKTVVLTGKLEVMGRSE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 615 AKKNIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 669


>gi|46907988|ref|YP_014377.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|81565576|sp|Q71YR0|DNLJ_LISMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|46881258|gb|AAT04554.1| DNA ligase, NAD-dependent [Listeria monocytogenes serotype 4b str.
           F2365]
          Length = 671

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 367/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N EDL  F  RI      K  + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRD----KVGDDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+     +R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 NTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D           +   +DIR+GD VL+K+AG++IP+V+  I  +R    +PF  P  CP 
Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPA 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 Q----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIQASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNL----------KVADKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +          K             K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFTGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|325297787|ref|YP_004257704.1| DNA ligase [Bacteroides salanitronis DSM 18170]
 gi|324317340|gb|ADY35231.1| DNA ligase [Bacteroides salanitronis DSM 18170]
          Length = 667

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 225/707 (31%), Positives = 352/707 (49%), Gaps = 48/707 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L +E+  H+  YY  + P+I D E+D L R    +    P+     DPN P  ++
Sbjct: 5   ERIDQLREELHLHNYKYYVENAPVISDQEFDHLMRELQDLEARHPE---HYDPNSPSVRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G ++N +  +V H  P LSL   ++  ++ +F  RI +      +       E K DGT 
Sbjct: 62  GSDINKNFVQVEHRYPMLSLGNTYSQAEVTEFYERIAKAL----NEDFEICCELKYDGTS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVYISKND 197
           I++ YE GK V A  RGDG  G+DV+  ++ I  IP VL  +      E+RGEV +    
Sbjct: 118 ISLTYENGKLVRAVTRGDGVRGDDVTDNVKTIRAIPLVLHGDGYPRQFEMRGEVLMPWKV 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  LN E        +ANPRNAASG L+  N  ++                +   G YE 
Sbjct: 178 FEELNRERELREEPLFANPRNAASGTLKLQNSAEVAARKLDSYLYYMLGENLPHDGHYEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           LQ+    GF V++  R+  T   I  + N     R  LP   DG+V KV+    Q+ LG 
Sbjct: 238 LQEAARWGFKVSHVTRKVKTLQEIFDFINYWDVERKNLPVATDGIVLKVNSLRQQRNLGY 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++KF  ++A TRLL +  Q+GRTG +TPVA LEPV + G ++  A+LHN D
Sbjct: 298 TAKSPRWAIAYKFQAERALTRLLKVTYQVGRTGAVTPVANLEPVQLAGTVVKRASLHNAD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I  L           D+ +GD V V++ GE+IPK+  + V  R   ++  +F + CP C
Sbjct: 358 IIASL-----------DLHIGDNVYVEKGGEIIPKITGVDVASRPEGSEKVTFITHCPEC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +VR  +       AA+ CT   +C  Q   +++HF+SR A NIEGLG + +D F++ 
Sbjct: 407 GSPLVRYEDE------AAYYCTNESSCPPQIKGKIEHFISRRAMNIEGLGPETVDQFYQE 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I   AD++TL+            +   G+ S  N+   I + R +  ER +F+L
Sbjct: 461 ----GLIHDVADLYTLKAEDLV------RLERMGEKSAENIIQGIARSREVPYERVLFAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG  +A+ +A+ + S +  A                LI V  +G+ IA +I+ ++ 
Sbjct: 511 GIRFVGETVAKKVARAFRSIEALATAT----------LDDLIHVDEIGEKIAGSILRYFA 560

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           + +N   +E L           E       +++ K +V +G   +  R + +E + + G 
Sbjct: 561 DEKNRNLIERLRTAGLKLEADEEDLAGHTDKLQGKSIVISGVFARHSRDEYKEMIEKHGG 620

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQY 721
                +S+KT  I+ G+N G SKLEKA+ L + +M E++FL ++ + 
Sbjct: 621 KNVGSISKKTSFILAGENMGPSKLEKARALNIPVMGEDEFLAMVGEQ 667


>gi|145593768|ref|YP_001158065.1| DNA ligase, NAD-dependent [Salinispora tropica CNB-440]
 gi|190359283|sp|A4X487|DNLJ_SALTO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145303105|gb|ABP53687.1| DNA ligase, NAD-dependent [Salinispora tropica CNB-440]
          Length = 711

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 227/709 (32%), Positives = 352/709 (49%), Gaps = 43/709 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR+  ++L +E++ H   YY    P I D+ +D   R   A+   FP L     P+ P  
Sbjct: 26  ARERHATLSRELTEHQYRYYVLDAPTISDAAFDEQLRELAALEAEFPAL---RTPDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG  +     V H+   +SL+  ++ E+L  +  R+ R         + +  E K+DG
Sbjct: 83  RVGGAFSTDFTPVAHAERMMSLDNAFSDEELAAWAERVER----DAGGPVPYLCELKVDG 138

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-----LSLNIPEIIEVRGEV 191
             I + YE+G+ V AA RGDG +GEDV+A +R+I  +P           IP+++EVRGE+
Sbjct: 139 LAINLTYERGRLVRAATRGDGRTGEDVTANVRSIQDVPGELTPSAEFPEIPDLLEVRGEI 198

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y     F  LN  ++  GR P+ANPRNAA+G LR+ +P    +R L   VHG G      
Sbjct: 199 YFPVAGFADLNAGLVEQGRAPFANPRNAAAGSLRQKDPRITASRPLRLVVHGFGARRGWA 258

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E    +R  G P ++  R      G+  Y     + R  + ++IDG+V KVD  +
Sbjct: 259 PSTQSESYAALRTWGLPTSDRWRVVPGLAGVAEYVAHYAAHRHDVEHEIDGVVVKVDPVA 318

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I+ K+  ++ +TRLLDID+ +GRTG +TP A LEPV + G+ +  
Sbjct: 319 IQGRLGSTSRAPRWAIAFKYPPEEVNTRLLDIDVNVGRTGRVTPFAVLEPVRVAGSTVAL 378

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN   ++            + + +GD V++++AG+VIP+V+  +V  R P+A+ F  
Sbjct: 379 ATLHNAREVER-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELRPPEARSFVM 427

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP C + +         +     RC    +C AQ  ER+ H   R AF+IE LG + 
Sbjct: 428 PSRCPCCGTPLA-----PAKEGDIDIRCPNTRSCPAQLRERVFHLAGRGAFDIEVLGYKG 482

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                 +E     I    D+FTL   Q   +    N  G    +   L +++   +   L
Sbjct: 483 AAALLDAE----IITDEGDLFTLDTAQLARSPFFVNKDGSLGSNAVKLLENLTVAKEREL 538

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IRHVG   A++LA+++ S +   Q               L  V  VG  IA 
Sbjct: 539 WRVLVALSIRHVGPTAAQALARHFRSVEAIDQAGE----------EELSAVDGVGPTIAA 588

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ E++    +   V    +                +E   +V TGTL    R +A E +
Sbjct: 589 SVREWFAVAWHREVVRKWAEAGVRMAEEAVAQGPRPLEGVTVVVTGTLAGYSRDQAAEAI 648

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G  V+  +S+KT  ++VGDNPG+K EKA  L V +++EE F  LL 
Sbjct: 649 QSRGGKVTGSVSKKTAFVVVGDNPGTKAEKAAGLKVPVLDEEGFQVLLD 697


>gi|290893414|ref|ZP_06556399.1| DNA ligase [Listeria monocytogenes FSL J2-071]
 gi|290557065|gb|EFD90594.1| DNA ligase [Listeria monocytogenes FSL J2-071]
          Length = 671

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 247/711 (34%), Positives = 368/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N EDL  F  RI      K  + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRD----KVGDDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+     +R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D           +   +DIR+GD VL+K+AG++IP+V+  I  ER  + +PF  P  CP 
Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERSGNEEPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 Q----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNL----------KVADKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +          K             K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|169630426|ref|YP_001704075.1| NAD-dependent DNA ligase LigA [Mycobacterium abscessus ATCC 19977]
 gi|254781373|sp|B1MDV2|DNLJ_MYCA9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169242393|emb|CAM63421.1| DNA ligase (polydeoxyribonucleotide synthase NAD+) [Mycobacterium
           abscessus]
          Length = 681

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 214/712 (30%), Positives = 346/712 (48%), Gaps = 43/712 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
              +++   L +E+  H   YY    P+I D ++D L RR  A+   +P+L     P+ P
Sbjct: 3   SDIQRQWGELAEEVRGHQFRYYVKDAPVISDGQFDELLRRLTALEEQYPEL---RTPDSP 59

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              +GG         V H    LSL+  ++ ++L  +  R+             +  E K
Sbjct: 60  TQLVGGAGFVTEFRSVDHLERMLSLDNAFSSDELTAWDARVRGDIG----QEPEYLCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV----LSLNIPEIIEVRG 189
           IDG  +++ YE G  V  A RGDG SGEDV+   R I  +P          IP ++EVRG
Sbjct: 116 IDGVALSLVYENGVLVRGATRGDGRSGEDVTLNARTIEDVPERLAKSEKYPIPALLEVRG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EV+    DF ALN  ++   + P+ANPRN+A+G LR+ NP     R L    HGLG+   
Sbjct: 176 EVFFRLEDFEALNASLVEESKPPFANPRNSAAGSLRQKNPAITARRRLRMICHGLGRAEG 235

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              +  ++    +   G PV+    +      +    N     R  + ++IDG+V KVD 
Sbjct: 236 FSPESLHDAYLALGEWGLPVSTHTTKVRGIAKVQERVNYWAEHRHDVEHEIDGVVVKVDT 295

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG  +R+PRW I++K+  ++A+T LLDI + +GRTG +TP A + PV + G+ +
Sbjct: 296 VALQRRLGSTSRAPRWAIAYKYPPEEATTELLDIRVSVGRTGRVTPFAYMTPVKVAGSTV 355

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN   +K            + + +GD V++++AG+VIP+V+  + + R+ + + F
Sbjct: 356 SLATLHNASEVKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVADLRNGNEREF 404

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C + +  +      +  A  RC    +C AQ  ER+ H   R AF+IE LG 
Sbjct: 405 VMPTACPECGTTLAHE-----KEGDADIRCPNSRSCPAQLRERVFHVAGRGAFDIEALGY 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +           A  I    D+F L       T   +   G    +   L D+++K +  
Sbjct: 460 EAAIALL----AAGVIEDEGDLFGLTADDLLRTDLFKTKSGALSANGARLLDNLDKAKQQ 515

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L R + +L IRHVG   AR+LA  +   +                   L  V  VG  I
Sbjct: 516 PLWRVLVALSIRHVGPTAARALATEFGDLEAIEGA----------SVEQLAAVEGVGATI 565

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A A+V+++    +   V+        +    + ++   +E   +V TG+L    R +A+E
Sbjct: 566 AAAVVDWFSVDWHRAIVDKWRAAGVRTADERDDSIPRNLEGLSIVVTGSLPGFSRDEAKE 625

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +   G   ++ +S+KT  ++VGD+PGSK +KA +LGV I++E+ F  LL  
Sbjct: 626 AIIARGGKSASSVSKKTAFVVVGDSPGSKYDKAVELGVTILDEDGFRALLAD 677


>gi|241764431|ref|ZP_04762455.1| DNA ligase, NAD-dependent [Acidovorax delafieldii 2AN]
 gi|241366173|gb|EER60750.1| DNA ligase, NAD-dependent [Acidovorax delafieldii 2AN]
          Length = 697

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 259/725 (35%), Positives = 385/725 (53%), Gaps = 61/725 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S+ QA     +L   ++     YY   +P + D+EYD++ R   A+  A PDL     P+
Sbjct: 11  SLAQAA---DALRARLNLWAHQYYVMDEPTVPDAEYDSVFRELQALETAHPDLI---TPD 64

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKD-DNSIFFT 129
            P  ++ G +   L  V H +P LS+    + E    + F  R+         D  + + 
Sbjct: 65  SPTQRVIGAVMDGLPPVRHVVPMLSIHTETDTEATGAQAFDARVRHELGLAPSDPPVEYV 124

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--------LNI 181
            EPK DG  +++RYE G+ V AA RGDG  GEDV+  IR I  IP VL          N+
Sbjct: 125 AEPKFDGLAMSLRYENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLVLPFDTPVSGGNNV 184

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFV 240
           P ++EVRGEVY+ + DF ALN+     G K + NPRNAA+G +R+L+      R L+FF 
Sbjct: 185 PPLLEVRGEVYMRRADFDALNERQREHGGKTFVNPRNAAAGAVRQLDSGIAAQRPLSFFA 244

Query: 241 HGLGKTSE-----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           +GLG  +         +  YE+LQ ++  GFPV   V+       +V+Y+  + + R  L
Sbjct: 245 YGLGAITPVGEGGPAFRTHYEVLQTLKSWGFPVAAQVQITQGATELVAYHQRVGASRDAL 304

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           PYDIDG+VYKV+   LQ+ LG + R PRW ++HK+  ++ +T++  ID+Q+GRTG +TPV
Sbjct: 305 PYDIDGVVYKVNSLLLQRDLGFKTREPRWAVAHKYPAQEMATKIEGIDVQVGRTGKITPV 364

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           ARL PV +GG  +TNATLHN   I+            + +RVGD V+V+RAG+VIP+VV 
Sbjct: 365 ARLAPVFVGGVTVTNATLHNLFEIRK-----------KGVRVGDTVIVRRAGDVIPEVVG 413

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           ++   R      F  P+ CP+C S VVR+         A HRCTGGL C+AQ+ E + HF
Sbjct: 414 VMPGNRVGYVPNFRMPNACPVCGSDVVREKGE------ANHRCTGGLFCAAQRKEAILHF 467

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
            +R A +IEGLG + +D        A  IR   D++ L        T +  +    + S 
Sbjct: 468 AARRAMDIEGLGDKLVDQLVD----ANVIRTLPDLYRL------GLTSLIALERMAEKSA 517

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            N+  ++ K +  +L RF+F+LGIRHVG   A+ LA+++                     
Sbjct: 518 QNVLAALEKSKQTTLPRFLFALGIRHVGEATAKDLARHFGVLDAIMDATE---------- 567

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVF 654
             L+ V  VG ++A+AI  F+  P N   VE L    V+   G   +     +    +V 
Sbjct: 568 EQLLAVNDVGPVVAKAIHTFFGQPHNREVVEQLRACGVTWPEGAPAERAPQVLAGMTVVL 627

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL  + R  A++ +   GA V+  +S+KT  ++ G+  GSKL +AQ+LGV +++E   
Sbjct: 628 TGTLPTLSRDAAKDLLEAAGAKVAGSVSKKTHYVVAGEEAGSKLARAQELGVPVLDEAGM 687

Query: 715 LFLLQ 719
           L LL 
Sbjct: 688 LALLA 692


>gi|282850287|ref|ZP_06259666.1| DNA ligase (NAD(+)) [Veillonella parvula ATCC 17745]
 gi|282579780|gb|EFB85184.1| DNA ligase (NAD(+)) [Veillonella parvula ATCC 17745]
          Length = 667

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 229/709 (32%), Positives = 368/709 (51%), Gaps = 46/709 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L+QE+++    YY    P + D EYD   R    +  A P+      P+ P  +
Sbjct: 4   KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++  S  KV H  P LSL  ++N +++R F  R+ +           + +E KIDG 
Sbjct: 61  VGMKVEGSFEKVVHGRPMLSLSNVFNADEVRAFGNRVEKELG---HKPSSYVVELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  N PE IEVRGE Y+  ++
Sbjct: 118 AVNLHYENGMFVRAVTRGDGRIGEDVTANVRTIKSIPLFL-DNAPEFIEVRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P     R L FF + +G         Q E
Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITANRNLAFFAYAIGSEVGANIHSQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+ +    F VN   R   T   ++   +     R  LPYD DG+V KV+ F  Q+ LG
Sbjct: 237 LLKSLENFKFSVNPHYRVCKTIDEVIEAIDYWGDKRHELPYDTDGMVIKVNSFDDQEVLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T L DI I +GRTG+LTP   LE V + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD V++ +A E+IP+V+ ++  +R+    PF+ P+ CP+
Sbjct: 357 DFID-----------EKDIRIGDHVIIHKAAEIIPEVIRVVPEKRNGSEIPFTIPNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR          AA RCT    C A + E++ HF SRDA NI+GLG   ++    
Sbjct: 406 CESPAVRREGE------AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     I    D++ L   Q  +          G  S  NL  +I+  ++  L+R ++ 
Sbjct: 459 NK----LITNVVDLYHLTVDQLVTM------DRMGKKSAENLVKAIDDSKSRGLDRVLYG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A    S   F                 L+ V  +G  +A +IVE+ 
Sbjct: 509 LGIRLIGSKAATTIANVVQSIDRFMTITK----------DELVAVEEIGPTMADSIVEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q+P +   +E L +          +   +++E + +V TG L+ + R +A + +   GA 
Sbjct: 559 QDPAHKEIIEGLTQAGLKMTVDVVEAAGNQMEGEIVVLTGKLEVMGRSEAGKILEAHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           V+  +S+KT +++ G++ GSKL KA +LG++++NEE+F+ LL++    +
Sbjct: 619 VTGSVSKKTTLVVAGEDSGSKLTKANELGIRVINEEEFVELLKELGEDI 667


>gi|198274661|ref|ZP_03207193.1| hypothetical protein BACPLE_00817 [Bacteroides plebeius DSM 17135]
 gi|198272108|gb|EDY96377.1| hypothetical protein BACPLE_00817 [Bacteroides plebeius DSM 17135]
          Length = 666

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 228/706 (32%), Positives = 359/706 (50%), Gaps = 48/706 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L +E+  H+  YY  + P I D E+D L R    +    P+     D N P  ++
Sbjct: 5   ERIDQLREELHTHNHNYYILNAPTISDQEFDRLMRELQDLEAKHPE---HYDENSPSVRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G ++N    +V H  P LSL   ++  ++R+F  R+ +      +       E K DGT 
Sbjct: 62  GSDLNKEFRQVEHKYPMLSLGNTYSETEVREFYERVRKAL----NEDFEICCELKFDGTS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197
           I++ YE G+ V A  RGDG  G+DV+  ++ I +IP  LS    P   E+RGE+ +    
Sbjct: 118 ISLTYEDGRLVQAVTRGDGVRGDDVTDNVKTIRSIPLRLSGEGYPRRFEIRGEILMPWTV 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  LN E        +ANPRNAASG L+  N   +               E+   G YE 
Sbjct: 178 FEELNREREQREEPLFANPRNAASGTLKSQNSAVVASRKLDAYLYYLLGEELPHDGHYEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           LQ+    GF V++ +R+A T   +  + N     R  LP   DG+V KV+    Q+ LG 
Sbjct: 238 LQEAARWGFKVSSHMRKARTLEEVFDFINYWDLERKNLPVATDGIVLKVNSQRQQRNLGF 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++KF  +QA T+LL +  Q+GRTG +TPVA LEPV + G ++  A+LHN D
Sbjct: 298 TAKSPRWAIAYKFQAEQACTKLLKVTYQVGRTGAVTPVANLEPVQLSGTVVKRASLHNAD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+ L           D+ +GD V V++ GE+IPK+  +  + R   ++  +F + CP C
Sbjct: 358 IIESL-----------DLHLGDMVYVEKGGEIIPKITGVDKDARPEGSEKVTFITHCPEC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            SR+VR  +       AAH CT    C  Q   R++HF+SR A NIEGLG + +D F++ 
Sbjct: 407 GSRLVRYEDE------AAHYCTNEDGCPTQIKGRIEHFISRRAMNIEGLGPETVDQFYQE 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I   AD++TLQ            +   G+ S  N+   + K + +  ER IF+L
Sbjct: 461 ----GLIHDVADLYTLQAADIC------RLNRMGEKSAENIIQGVEKSKTVPYERVIFAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG  +A+ +A+ + S  +                  LI V  +G+ IAQ+I+ ++ 
Sbjct: 511 GIRFVGETVAKKVARAFRSIDDLKSAT----------LDDLIHVDEIGEKIAQSILRYFH 560

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           + +N+  +E L +         E+      +++ + +V +G      R + +  + + G 
Sbjct: 561 SEKNLQLIERLREAGVQMAISEEETAGQTDKLQGQSIVISGVFAHHSRDEYKALIEKHGG 620

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
                +S+KT  I+ G+N G SKLEKA++LG++I+NEE+FL ++ +
Sbjct: 621 KNVGSISKKTSFILAGENMGPSKLEKAEKLGIRIVNEEEFLGMIGE 666


>gi|254832503|ref|ZP_05237158.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 10403S]
          Length = 671

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 368/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N EDL  F  RI      K  + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRIRD----KVGDDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+     +R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  ++   + +Y +E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCSSLEEVYAYIDEWTEKRADLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D           +   +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKAIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 Q----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNL----------KVADKETLTNINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +          K             K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|254829489|ref|ZP_05234176.1| DNA ligase [Listeria monocytogenes FSL N3-165]
 gi|258601904|gb|EEW15229.1| DNA ligase [Listeria monocytogenes FSL N3-165]
          Length = 671

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 367/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N EDL  F  RI      K  + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRIRD----KVGDDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+     +R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  ++   + +Y  E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCSSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D           +   +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 Q----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNL----------KVADKETLTNINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +          K             K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|118594798|ref|ZP_01552145.1| DNA ligase, NAD-dependent [Methylophilales bacterium HTCC2181]
 gi|118440576|gb|EAV47203.1| DNA ligase, NAD-dependent [Methylophilales bacterium HTCC2181]
          Length = 671

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 248/707 (35%), Positives = 385/707 (54%), Gaps = 46/707 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++ L  L++ IS H+  YY    P+I D+E+D +     AI    P+L      + P  
Sbjct: 7   IKERLVDLKKLISEHNYHYYVLDNPLISDAEFDKIFLEIKAIEDLNPELITI---DSPTQ 63

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GGE N S  ++TH  P LSL   ++ +DL  F  RI       +   I +  EPK DG
Sbjct: 64  RVGGEPNKSFKQITHQRPMLSLGNAFDEKDLDVFDKRIREELGVAN---ISYVAEPKFDG 120

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISK 195
             +TI Y  G+   AA RGDG  GEDV+  I+ I +IP    S +    IE+RGEV + K
Sbjct: 121 LAVTIVYVDGELHLAATRGDGSVGEDVTHNIKTIKSIPLKLPSNSPAGQIEIRGEVIMLK 180

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
           NDF+ LN   +    K +ANPRNAA+G LR+L+PT        F              Q 
Sbjct: 181 NDFIGLNKRQLEANEKVFANPRNAAAGSLRQLDPTIAASRPLSFYAYSIFCDNKTLASQE 240

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L  ++ L  P +N  ++ +   G++ +YN + + R +LP+DIDG+VYKV+  ++Q +L
Sbjct: 241 EGLDLLKQLLIPTSNLTKRVDGVRGMIDFYNAINNARKSLPFDIDGVVYKVNSLNMQDEL 300

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW I+HKFA ++A T + DI++Q+GRTG +TPVARL PV + G  +TNATLHN
Sbjct: 301 GFVSRAPRWAIAHKFAAEEAMTTIKDINVQVGRTGSITPVARLMPVVVAGVTVTNATLHN 360

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED ++            +DI +GD V+V+RAG+V+P+V+ ++  +R  D + F  P+ CP
Sbjct: 361 EDELRR-----------KDIHIGDFVMVRRAGDVVPEVIKVVHEKRPNDIKKFEMPTLCP 409

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +VR+         +  RC  G+ C AQ+ + + HF SR A +I+GLG++ +D   
Sbjct: 410 ECSNVLVREEGE------SVLRCNAGMLCPAQRKQSIMHFASRKAMDIDGLGEKIIDQLI 463

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +S      +   +D++T++        K+  +  F   S  NL +SI K +  +L +FI+
Sbjct: 464 ESS----LVLSVSDLYTVKTE------KLLKLDRFAKKSAENLIESIEKSKKTTLGKFIY 513

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR+VG   A  LAK + S                    SL+ +  +G  +A +I  +
Sbjct: 514 ALGIRNVGEATAYDLAKQFGSIDKIMSASK----------ESLLSIHDIGPTVATSIQNY 563

Query: 616 YQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +    N   V  LLKE           + +S+E+E    V TGTL  ++R +A+  +   
Sbjct: 564 FNEDTNREQVAILLKEGIQWDSIEVGAEEISNELEGLVFVLTGTLTSLKRDEAKNLILSC 623

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  VS  +S+KTD +I G + GSKL+KA  LGVK++ E++ + L ++
Sbjct: 624 GGKVSGSVSKKTDYVIAGLDAGSKLDKASALGVKVIGEDELIQLTKK 670


>gi|299820617|ref|ZP_07052507.1| NAD-dependent DNA ligase LigA [Listeria grayi DSM 20601]
 gi|299818112|gb|EFI85346.1| NAD-dependent DNA ligase LigA [Listeria grayi DSM 20601]
          Length = 674

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 239/715 (33%), Positives = 369/715 (51%), Gaps = 51/715 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K   +L +E++ +   YY    P + D  YD   +    I  A PD       + P  +
Sbjct: 5   KKRYEALIEELNQYSYDYYVQDNPSVEDVVYDKAMQELLKIEEAHPDWITV---DSPSQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KVTH  P LSL   +  +DLR F  RI       D     +  E KIDG 
Sbjct: 62  VGGEILEGFQKVTHKTPMLSLGNAFGEDDLRDFDRRIQDRIG--DGTEYEYMCELKIDGL 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++ YE G++   A RGDG +GED++A +R + +IP  L   +   IEVRGE Y+ K  
Sbjct: 120 AVSLIYENGEYRQGATRGDGTTGEDITANLRTVRSIPIKLKETLS--IEVRGETYMPKKS 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN      G   +ANPRNAA+G LR+L+      R L+ F++ +    ++      E
Sbjct: 178 FQKLNGAREEEGLPLFANPRNAAAGSLRQLDTKIAAKRNLDIFLYSVADFGDMGVTKHSE 237

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R       +++Y  E  + RS L Y+IDG+V K+++   Q+++G
Sbjct: 238 GLDYLEKLGLKVNKERRVCKNIEEVLAYVEEWTAKRSDLAYEIDGIVVKLNDLRQQEEVG 297

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T L DI++++GRTG++TP A L+PV++ G  ++ A+LHNE
Sbjct: 298 YTVKSPRWAIAYKFPAEEVPTVLRDIELRVGRTGVITPTAILDPVHVAGTTVSRASLHNE 357

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D IK            +DIR+ D V++K+AG++IP+V+  +  +R    + F  P  CP 
Sbjct: 358 DLIK-----------QKDIRIKDTVMIKKAGDIIPEVIRSLPEKRTGSEEEFHMPVHCPE 406

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR A NI+GLG++ +   F 
Sbjct: 407 CGSELVRLEGE------VALRCINPK-CPAQLKEGLIHFVSRSAMNIDGLGEKVVRQLFT 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     I   AD++ L +       ++  +   G+ SVTNL  +I K +  SLER +F 
Sbjct: 460 HE----LIHDVADLYFLSKE------ELLQLERMGEKSVTNLLAAIEKSKQNSLERLLFG 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ ARSLA ++ +  N  +               LI +  +G+I+A +IV ++
Sbjct: 510 LGIRHVGAKAARSLAIHFETMDNVKEA----------SLEDLIAINDIGEIMADSIVTYF 559

Query: 617 QNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +N      ++ L +                        KK+V TG L++++R +A+  + 
Sbjct: 560 ENEEVHSLLQELERAGVNMTYTGPRLEEVPEEDLVFAGKKVVLTGKLEQLKRDEAKALIE 619

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            LG  VS  +S+ TDI++ G + GSKLEKA++L + I +E   L  L      ++
Sbjct: 620 SLGGSVSGSVSKNTDIVVAGSDAGSKLEKAEELSIPIWSENDLLEYLPDEGGLIK 674


>gi|304415222|ref|ZP_07395930.1| DNA ligase (NAD(+)-dependent) [Candidatus Regiella insecticola
           LSR1]
 gi|304282928|gb|EFL91383.1| DNA ligase (NAD(+)-dependent) [Candidatus Regiella insecticola
           LSR1]
          Length = 674

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 223/715 (31%), Positives = 377/715 (52%), Gaps = 49/715 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   ++++     + +H+  Y+    P I D+EYD L      +   +P+L  +   + 
Sbjct: 1   MKSIIQQINQRRAILQHHEYQYHVLDNPEIPDAEYDRLMNELRELETQYPELICA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G        +V H  P LSL+ +++ +    F  R++      +   + F  EPK
Sbjct: 58  PTQRVGAVPLNIFEQVKHESPMLSLDNVFDEKSYLAFHQRLHNRLNLTE--ELAFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  +++ YEKG+ V AA RGDG  GE+++A +R I TIP  L  +  P+ IE+RGEV+
Sbjct: 116 LDGVAVSLLYEKGELVRAATRGDGSIGENITANVRTIRTIPLRLRGDDIPQQIEIRGEVF 175

Query: 193 ISKNDFLALNDE-MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-I 249
           +    F   N+       +K ++NPRNAA+G LR+L+P     R L+FF +G+G      
Sbjct: 176 MPLIGFAQFNEAARHKAEKKFFSNPRNAAAGSLRQLDPRITAKRPLDFFCYGMGLLKGGA 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +   + L + +  G PV+N +++      I+++Y  ++  R  L +DIDG+V KVD+ 
Sbjct: 236 LPQHHLQRLLQFKAWGLPVSNQIKRCIGSDQIIAFYRHLEQQRDRLDFDIDGVVIKVDDL 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ++LG  AR+PRW  + KF  ++  T++  ++ Q+GRTG +TPVARLEP+ + G +++
Sbjct: 296 SLQERLGFSARAPRWATAFKFPAQEKMTQVRQVEFQVGRTGAITPVARLEPIQLAGVMVS 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHN D IK L           D+ +GD V+++RAG+VIPK+V +++N R  +AQ  S
Sbjct: 356 NATLHNADEIKRL-----------DLHIGDTVIIRRAGDVIPKIVSVVMNARPLEAQEVS 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  CP+C S + R             RC+G L C+AQ+ + LKHFVSR A +++G+G +
Sbjct: 405 FPLHCPVCGSDIERLEGET------IARCSGALLCTAQRKKMLKHFVSRRALDVDGMGDK 458

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++     E     ++ PAD+F L   +     ++        ++     +     + + 
Sbjct: 459 IIEQLVTKE----YVKHPADLFHLTVEKLMGLNRMGAKSAHNLIAALEKRN-----KRLX 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
                     R VG   A +LA ++ +  +              D  +L +V  VG ++A
Sbjct: 510 XXXXXXXXXXREVGETTAANLAAHFRTLSHLRSA----------DVETLQQVADVGVVVA 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRH----EKNVSSEIENKKLVFTGTLQKIQRHK 665
             ++ F     N   + AL   +            +  ++   +K +V TG+L  + R  
Sbjct: 560 THVINFLAQEHNQHVINALEAVIHWPEPEQIIAVAEESNNIFTSKTIVLTGSLNSLSREN 619

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LGA VS  +S+KTD++I G+  GSKL KAQ+LG+K++ E++ L LL  
Sbjct: 620 AKDRLVALGAKVSNSVSKKTDLVIAGEGAGSKLIKAQELGIKVITEDEMLRLLSD 674


>gi|288572809|ref|ZP_06391166.1| DNA ligase, NAD-dependent [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568550|gb|EFC90107.1| DNA ligase, NAD-dependent [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 674

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 228/711 (32%), Positives = 364/711 (51%), Gaps = 49/711 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +      +   SL++EI+ HD  YY    P I DS YD + R    +    P L      
Sbjct: 1   MVSRDILRRYESLKKEIARHDRLYYVLDSPEIDDSSYDRMMRELLELEREHPTLV---SD 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       KV HS P LSL+ ++++ +LR F++R          +S  +  E
Sbjct: 58  DSPSRRVGGRPLDGFLKVVHSHPMLSLDDVFDVSELRSFLSR-----ATGPVSSFPWVCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE G FV  A RGDG  GEDV++ +  + ++P  L++++P  +EVRGEV
Sbjct: 113 LKIDGLAVSLIYEDGVFVGGATRGDGSVGEDVTSNLLTVRSLPLRLNIDVPGRLEVRGEV 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y++KN F  LN+     G   +ANPRNAA+G LR+L+P     R L+ FV+ +    E  
Sbjct: 173 YMAKNSFARLNERREEKGDPLFANPRNAAAGSLRQLDPRVAAERRLDLFVYAVVSPEERG 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q ++L  ++  G PV +     +    +  +    +  R +L Y  DG+V K D   
Sbjct: 233 INSQSDLLSWLKKAGLPVQDAWELCSDLDEVEEFVARWQEERFSLSYVTDGVVVKADPVE 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
              +LG  AR+PRW +++K+  ++ +T L +I+I +GRTG +TPVA LEPV + G+++  
Sbjct: 293 QWGRLGRTARAPRWAVAYKYPPEEKTTVLKEIEISVGRTGAMTPVAILEPVQLAGSVVRR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +D+R+GDRV V++AGE+IP++V +    R+    PF  
Sbjct: 353 ASLHNEDEIRR-----------KDVRIGDRVKVRKAGEIIPEIVSVDSEARNGTEIPFEM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CPIC S  VR  +    +           +C AQ  E L+HF SR   +I GLG++ 
Sbjct: 402 PRNCPICGSEAVRLPDESAWR-------CPNKSCPAQMNEELRHFASRGCMDIRGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                 S      +R  AD++ L+  Q  S      +   G  S +NL  +I   ++  L
Sbjct: 455 ASQLVGS----GFVRDLADLYELKEEQIIS------LDRMGPKSASNLISAIRGSKDRPL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
              +  LGIRHVG  +A  L + Y S +   +           D   L  +  VG  IA 
Sbjct: 505 AALLAGLGIRHVGKGVAELLVERYGSMEALRRA----------DPEELGSIEGVGPAIAA 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQE 668
           ++  F+ +  NI  ++ L+        R  +  S    +     VFTG L++  R +AQ+
Sbjct: 555 SLEAFFSDDGNIRTLDRLMDHGVRMEERRPETSSDGKLLSGMTFVFTGELKRASRSEAQK 614

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            V  +G   ++ +S KT  ++ G++PGSKL+KA  LG+ +++E+ F  +++
Sbjct: 615 LVKSMGGKATSSVSGKTSYVVAGESPGSKLDKAVSLGIPVLDEDGFYEMVE 665


>gi|254993539|ref|ZP_05275729.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J2-064]
          Length = 665

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 246/707 (34%), Positives = 367/707 (51%), Gaps = 53/707 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N EDL  F  RI      K  + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRD----KVGDDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+     +R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 NTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D           +   +DIR+GD VL+K+AG++IP+V+  I  +R    +PF  P  CP 
Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPA 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 Q----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNL----------KVADKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +          K             K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663


>gi|217964094|ref|YP_002349772.1| DNA ligase, NAD-dependent [Listeria monocytogenes HCC23]
 gi|254781360|sp|B8DFG5|DNLJ_LISMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|217333364|gb|ACK39158.1| DNA ligase, NAD-dependent [Listeria monocytogenes HCC23]
 gi|307571338|emb|CAR84517.1| DNA ligase, NAD-dependent [Listeria monocytogenes L99]
          Length = 671

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 247/711 (34%), Positives = 367/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N EDL  F  RI      K  + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRD----KVGDDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+     +R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D           +   +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 Q----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNL----------KVADKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +          K             K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|269798060|ref|YP_003311960.1| DNA ligase, NAD-dependent [Veillonella parvula DSM 2008]
 gi|269094689|gb|ACZ24680.1| DNA ligase, NAD-dependent [Veillonella parvula DSM 2008]
          Length = 667

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 229/709 (32%), Positives = 371/709 (52%), Gaps = 46/709 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L+QE+++    YY    P + D EYD   R    +  A P+      P+ P  +
Sbjct: 4   KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++  S  KV H  P LSL  ++N +++R F  R+ +           + +E KIDG 
Sbjct: 61  VGMKVEGSFEKVVHGRPMLSLSNVFNADEVRAFGNRVEKELG---HKPSSYVVELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  N PE IEVRGE Y+  ++
Sbjct: 118 AVNLHYENGMFVRAVTRGDGRVGEDVTANVRTIKSIPLFL-DNAPEFIEVRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P     R L FF + +G         Q E
Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITANRNLAFFAYAIGSEVGANIHSQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+ +    F VN   R   T   ++   +     R  LPYD DG+V KV+ F  Q+ LG
Sbjct: 237 LLKSLENFKFSVNPHYRVCKTIDEVIEAIDYWGDKRHELPYDTDGMVIKVNNFDDQEVLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T L DI I +GRTG+LTP+  LE V + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPIGELESVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD V++ +A E+IP+V+ ++  +R+    PF+ P+ CP+
Sbjct: 357 DFI-----------NEKDIRIGDHVIIHKAAEIIPEVIRVVPEKRNGSEIPFTIPNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR          AA RCT    C A + E++ HF SRDA NI+GLG   ++    
Sbjct: 406 CESPAVRREGE------AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     I    D++ L   Q  +          G  S  NL  +IN  ++  L+R ++ 
Sbjct: 459 NK----LITNVVDLYHLTVDQLVTM------DRMGKKSAENLVKAINDSKSRGLDRVLYG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A    S + F                 L+ V  +G  +A +I+E+ 
Sbjct: 509 LGIRLIGSKAATTIANVVKSMERFMTITK----------DELVAVEEIGPTMADSIIEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q+P ++  +E L +          +   +++E + +V TG L+ + R +A + +   GA 
Sbjct: 559 QDPSHVAIIEGLTQAGLKMTVDVVEAAGNQLEGEIVVLTGKLEVMGRTEAGKILEAHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           V+  +S+KT +++ G++ GSKL KA +LG++++NEE+F+ LL++    +
Sbjct: 619 VTGSVSKKTTLVVAGEDSGSKLTKANELGIRVLNEEEFVELLKELGEDI 667


>gi|294102358|ref|YP_003554216.1| DNA ligase, NAD-dependent [Aminobacterium colombiense DSM 12261]
 gi|293617338|gb|ADE57492.1| DNA ligase, NAD-dependent [Aminobacterium colombiense DSM 12261]
          Length = 684

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 240/732 (32%), Positives = 379/732 (51%), Gaps = 67/732 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   +A + + +L +EI+ H   YY    P I D EYDAL R   ++  AFP+    +DP
Sbjct: 1   MDRREALQRIEALREEINRHAHLYYVLDTPEIADHEYDALFRELASLEEAFPEF---DDP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P +++GG       KV H  P LSL+   + E++  F  R++         ++ +  E
Sbjct: 58  DSPTHRVGGAPLDRFEKVIHESPLLSLDNALSKEEVWSFCDRVFSGLGL---GNLEYLCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE G F+  A RGDG  GEDV+A +R I ++P  L   +   +EVRGEV
Sbjct: 115 LKIDGLAVSLIYEDGVFIRGATRGDGLVGEDVTANLRTIRSLPLRLREKVSGRMEVRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            +++  F ALN E    G   +ANPRNAA+G LR+L+ +   +R L+ F++ +    E  
Sbjct: 175 LMTREQFAALNQEREEGGELLFANPRNAAAGSLRQLDSSITASRKLSIFLYYVAHPQEHG 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q E+L  ++ LGFPV +     +T   I ++  E +  R +LPY  DG+V K+++  
Sbjct: 235 LRTQQEVLHWLQHLGFPVQSAWGVCSTRQDIDAFIEEWREKRLSLPYSTDGVVLKINQVD 294

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
             + LG  A++PRW I+ K+  ++ ++R+LDI++ +GRTG LTPVA LEPV++ G ++  
Sbjct: 295 FWEDLGTTAKAPRWAIAFKYPPEEKTSRILDIEVSVGRTGTLTPVAHLEPVHLAGTVVRR 354

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+ D+V+V++AGE+IP+VV ++   R  +   F  
Sbjct: 355 ASLHNEDEIRR-----------KDIRIKDKVVVRKAGEIIPEVVRVLTEGRDGNEVEFQM 403

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S V+R           A RC    +C AQ  E + HF SR A +I GLG + 
Sbjct: 404 PDTCPACGSHVMRIPGE------VALRCPNRASCPAQLREGIAHFASRAAMDIRGLGDKL 457

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +      +     IR  AD++TL+R    S      +   G+ S +NL ++++  +N  L
Sbjct: 458 ITQLVDRQ----LIRNMADLYTLKREDLLS------LDRMGEKSASNLLEALSVSKNRFL 507

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
              I +LGIR VG ++A  LA  + S    +                L  +  VG  IA 
Sbjct: 508 SNLITALGIRLVGKKVAEILADRFHSLDALSSAQE----------EGLSSIDGVGPKIAA 557

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +I  F+ +  N   +  L       +      +V   +E+++ VFTG LQ + R +A+  
Sbjct: 558 SIKAFFDDEANKEMISRLKDAGVRVVEEKSMSSVEGPLEDQRFVFTGELQSMSRGEAEAL 617

Query: 670 VTQLGAVVSAILSRKTD-----------IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           V  LG                       I++ G   GSKL+KA++LG+ I+NEE+FL ++
Sbjct: 618 VKNLGG-----------ASSSSVSKKTSIVVAGPGAGSKLQKARELGITIINEEEFLQMI 666

Query: 719 QQYNTTLRIHDD 730
           + Y      H D
Sbjct: 667 RPYERVFSKHTD 678


>gi|305682056|ref|ZP_07404860.1| DNA ligase (NAD+) [Corynebacterium matruchotii ATCC 14266]
 gi|305658529|gb|EFM48032.1| DNA ligase (NAD+) [Corynebacterium matruchotii ATCC 14266]
          Length = 715

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 208/718 (28%), Positives = 347/718 (48%), Gaps = 48/718 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            P E    ++  +E   L  E++ H + YY    P I D+E+DAL ++ +A+    P+LA
Sbjct: 11  TPAETTDTQEIHQEWQRLASEVTRHRELYYNQ-TPEITDAEFDALFKKLEALEADHPELA 69

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+ P  ++G  +  S   V H    LSL+ +++ E+L +++ R+         ++ 
Sbjct: 70  ---TPDSPTQQVGAPVESSFENVEHLERMLSLDNVFDEEELDEWLQRV---------DAP 117

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV----LSLNIP 182
            +  E KIDG  + + Y  G    AA RGDG  GEDV+   + I  +P          IP
Sbjct: 118 EYVTELKIDGLSLALVYRNGVLERAATRGDGRIGEDVTENAKVIQDVPHTLTATEEFPIP 177

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH 241
           +++EVRGEV+I+  DF  +N++    G KP+ANPRNAA+G LR+ +      R L    H
Sbjct: 178 DLLEVRGEVFIAVEDFAEVNEQRQKDGGKPFANPRNAAAGSLRQKDVEAVRRRKLRMLCH 237

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           G+G T       QY   + +   G PV++  +   T   +       +  R     ++DG
Sbjct: 238 GIGATEGFTPASQYHAYEALAAWGLPVSDYTKLVKTIDEVHKQVAYWEKHRGDAVCEMDG 297

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           LV KVD  + Q+QLG  +R+PRW I++K+  ++  T+LLDI   +GRTG +TP A +EPV
Sbjct: 298 LVVKVDSIAEQRQLGATSRAPRWAIAYKYPPEEVQTKLLDIHEGVGRTGRVTPYAVMEPV 357

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
           ++ G+++  ATLHN+  +K            + + +GD V++++AGE+IP+V+  +V  R
Sbjct: 358 SVAGSIVELATLHNQTEVKR-----------KGVLIGDTVVIRKAGEIIPEVLGPVVERR 406

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + + FP  CP C +++         +     RC     C AQ   R+K+   R  F
Sbjct: 407 DGTEREYVFPENCPSCGTKLA-----PQREGDVDWRCPNSQKCPAQVAARIKYLADRGRF 461

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IE LG++  +   +S      +     +F L       T+      G  + +   L  +
Sbjct: 462 DIEALGEKAAEDLVRS----GVLVDEGGLFNLTEADLLRTSIYTTKKGTLNATGKKLLKN 517

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +   ++  L R + SL IR VG   +R+LA  Y S                     +   
Sbjct: 518 LETAKHTDLWRVMASLSIRMVGNTASRALASRYRSLDALRAAT----------VEDIAET 567

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             VG ++AQ+  ++++   +   V+   K                +    +V TG+L+  
Sbjct: 568 EGVGLVMAQSFKDWFEVQWHCDIVDQWAKSGVTVEDDASDRPEQVLAGLTVVVTGSLEGF 627

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R  A+E +   G   S  +S+KTD ++VG+  GSK +KA+ LG+ I++E  F+ LL 
Sbjct: 628 TRDSAKEAIISRGGKASGSVSKKTDYVVVGEKAGSKEQKARDLGLTILDEAGFVQLLA 685


>gi|265753576|ref|ZP_06088931.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_33FAA]
 gi|263235290|gb|EEZ20814.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_33FAA]
          Length = 665

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 232/705 (32%), Positives = 356/705 (50%), Gaps = 48/705 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L +E+  H+  YY  + P I D E+D L R    +    P+     D N P  ++
Sbjct: 5   ERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G ++N +  +V H  P LSL   ++  ++ +F  R+ +      +       E K DGT 
Sbjct: 62  GSDINKNFMQVVHKYPMLSLTNTYSETEVTEFYDRVKKSL----NEDFEICCEMKYDGTS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197
           I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL     PE  E+RGE+ +    
Sbjct: 118 ISLTYENGKLVRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPEAFEIRGEILMPWVV 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  LN E  A     +ANPRNAASG L+  N   +                +   G YE 
Sbjct: 178 FEELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPCDGHYEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L++    GF +++  R+  T   +  +       R  LP   DG+V KV+    Q+ LG 
Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++KF  +QA TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN D
Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNAD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+GL           D+ +GD V V++ GE+IPK+V +  N R        F ++CP C
Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKNARIMIGDKVKFITYCPEC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S++VR          AA+ CT   AC  Q   +++HF+SR A +I+GLG + +D F++ 
Sbjct: 407 GSKLVRYEGE------AAYYCTNDAACPPQIKGKIEHFISRRAMDIDGLGPETVDQFYQE 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 IR  AD++TL       T+ I N+   G+ S  N+   I + + +  ER +F+L
Sbjct: 461 ----GLIRDVADLYTL------KTSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG  +A+ +AK + S    A                LI V  +G+ IAQ+I+ ++ 
Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADA----------SLDDLIHVDEIGEKIAQSILLYFA 560

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           NP+N   +E L           E       ++  K +V +G      R + +E + + G 
Sbjct: 561 NPKNRDIIERLRVAGVRLEADEEDTSGHTDKLAGKSVVISGVFAHHSRDEYKELIEKHGG 620

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
                +S KT  ++ GDN G SKLEKAQ+LGV I++EE+FL +++
Sbjct: 621 KNVGSISSKTSFVLAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665


>gi|47095684|ref|ZP_00233291.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 1/2a F6854]
 gi|254900737|ref|ZP_05260661.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes J0161]
 gi|254913778|ref|ZP_05263790.1| DNA ligase [Listeria monocytogenes J2818]
 gi|254938165|ref|ZP_05269862.1| DNA ligase [Listeria monocytogenes F6900]
 gi|284802202|ref|YP_003414067.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5578]
 gi|284995344|ref|YP_003417112.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5923]
 gi|47015969|gb|EAL06895.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 1/2a F6854]
 gi|258610778|gb|EEW23386.1| DNA ligase [Listeria monocytogenes F6900]
 gi|284057764|gb|ADB68705.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5578]
 gi|284060811|gb|ADB71750.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5923]
 gi|293591794|gb|EFG00129.1| DNA ligase [Listeria monocytogenes J2818]
          Length = 671

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 368/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N EDL  F  RI      K  + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRIRD----KVGDDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+     +R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  ++   + +Y +E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCSSLEEVYAYIDEWTEKRADLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D           +   +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 Q----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNL----------KVADKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +          K             K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|328950509|ref|YP_004367844.1| DNA ligase [Marinithermus hydrothermalis DSM 14884]
 gi|328450833|gb|AEB11734.1| DNA ligase [Marinithermus hydrothermalis DSM 14884]
          Length = 676

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 240/712 (33%), Positives = 379/712 (53%), Gaps = 51/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+A+K +  L Q I YH+  YY    P I D+EYDAL R   A+   +PDL     P
Sbjct: 1   MTREEAKKRVLELRQAIRYHNYRYYVLDDPEISDAEYDALMRELKALEARYPDLV---TP 57

Query: 72  NGPLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P   +G G +  S  ++ H  P  SL+  +N+E++R+F  R+ R   +       +T+
Sbjct: 58  DSPTQVVGAGMIESSFREIQHPTPLYSLDNAFNLEEVREFEARLERALGRP--GPFEYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  + + YE+G  V+ A RG+G +GE+V+  +  IP +PR L    P  +EVRGE
Sbjct: 116 EYKIDGLSVNLYYEEGFLVWGATRGNGRTGEEVTQNLLTIPDVPRRLEGA-PARLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+ ++ FL LN      G  P+ NPRNAA+G LR+ +P    TR L  + +G+G   + 
Sbjct: 175 VYMPRDTFLKLNQAREEAGLPPFKNPRNAAAGSLRQQDPRVTATRGLRAYFYGIGLGLQE 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q E+L  ++  GFPV    R      GI + Y    + R T+P++ DG+V K++ 
Sbjct: 235 TGVETQAELLDYLKRAGFPVEPHARVVRGVEGIETAYQAFLAQRHTVPFEADGVVVKLNN 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q +LG  A+SPRW +++KF  ++  TR+L++  Q+GRTG +TPVA LEPV + G  +
Sbjct: 295 LAWQDELGYTAKSPRWAVAYKFPAEEKKTRVLEVIFQVGRTGRVTPVAVLEPVLLDGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  +LHNE Y++ L            + +GD VLV +AG +IP+V+ ++  ER    +P 
Sbjct: 355 SRVSLHNEAYLEEL-----------GLMLGDWVLVHKAGGIIPEVLRVLKEERTGTERPL 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP C   +V +           HRC   L C AQ  ER++H+ SR A +I+GLG+
Sbjct: 404 VFPDACPACGHALVLE--------GKIHRCPNPL-CPAQAFERIRHYASRRAMDIQGLGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   +       IR PAD++ L +    S      +  FG+ S  NL   I   +  
Sbjct: 455 RHIEQMLEK----GLIRTPADLYRLTKADLVS------LERFGEKSAENLLAQIEASKTR 504

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            LER +F+LGI  VG  +AR+LA+ + +     +               L+ V  VG++ 
Sbjct: 505 GLERLLFALGIPQVGEALARTLARRFGTLDRLLEATP----------EELLEVEDVGELT 554

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+ I E   +P  +  +E L      S    E+  S  +     V TG L +  R + + 
Sbjct: 555 ARRIHETLHDPAMLELIEQLRAAGV-SFEAKERPRSDALAGLTFVLTGELSR-PRAEVKR 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LGA V++ +S+KT  ++ G   GSKL+KA++LG+ +++E     L+QQ
Sbjct: 613 RLEALGAKVASAVSKKTSYVVAGAGAGSKLQKARELGIPVLDEAGLEALIQQ 664


>gi|332880018|ref|ZP_08447702.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682014|gb|EGJ54927.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 663

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 230/705 (32%), Positives = 367/705 (52%), Gaps = 49/705 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L +E++ H+  YY    P I D E+D   +   A+  A P+     D N P  +
Sbjct: 2   KEKIQQLREELNQHNYNYYVLDTPTISDFEFDQKLKELQALEQAHPEY---YDENSPTVR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  +   V H     SL+  ++ EDL ++  RI +       + I FT E K DG 
Sbjct: 59  VGGTITKNFPTVVHEYRMYSLDNSYSKEDLEEWEQRIIKTLG---SDQINFTCELKYDGA 115

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I + YE GK   A  RGDG  G+D++A +R I ++P  L  + PE   +RGE+ + K  
Sbjct: 116 SIDLLYENGKLKQATTRGDGIQGDDITANVRTIGSVPLQLKGDYPERFYIRGEIVMPKKA 175

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256
           F ALN E +A G  P+ NPRN ASG L+  +  +   R L+  ++ L    +   K Q+E
Sbjct: 176 FEALNKERVAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFL--VGDTGIKSQFE 233

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K R  GF V N  +  ++   ++ + NE  S R TLPY+ DG+V KVD  + Q++LG
Sbjct: 234 GLEKARAWGFKVPNISKLCHSTAEVMDFINEWDSKRHTLPYETDGVVVKVDSIAQQEELG 293

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++SPRW +++KF  +Q  T L  I  Q+GRTG +TPVA L+PV + G ++  A+LHN 
Sbjct: 294 YTSKSPRWAMAYKFKAEQVDTLLESISYQVGRTGAITPVANLQPVLLAGTIVKRASLHNA 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DI +GD V V++ GE+IPK+V + + +R  +A+   + + CP 
Sbjct: 354 DQIEKL-----------DIHIGDSVYVEKGGEIIPKIVGVNLEKREANAEKVQYITHCPE 402

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + +VR+         A H C    +C  Q   +++HF+SR A +IEGLG++ ++  F+
Sbjct: 403 CGTALVRNEGE------AQHYCPNSNSCPPQITGKIQHFISRKAMDIEGLGEETVELLFR 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  I   AD++ +      +  K+  +      S  N+   I K + I  ER +F+
Sbjct: 457 ----AGIIHTYADLYEV------TVAKLLPLERMAQKSAENIVKGIEKSKEIPFERVLFA 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR+VG  +A+ LA++Y + +                   LI V  +G+ IA ++V F+
Sbjct: 507 LGIRYVGETVAKKLARHYKTIEALEAAT----------IEQLIEVDEIGNQIASSVVSFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            +  N   +E L           +       +++    V +G      R + +  + Q G
Sbjct: 557 ADAYNRALIERLKGYGLQFALSEQATEGQTDKLKGLTFVVSGVFHLHSRDELKTLIEQHG 616

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
             V + +S KT  +IVGDN G SK EKA+ LGVK+++EE+F  L+
Sbjct: 617 GKVGSSISSKTSYVIVGDNMGPSKKEKAESLGVKMISEEEFEALI 661


>gi|150021387|ref|YP_001306741.1| DNA ligase, NAD-dependent [Thermosipho melanesiensis BI429]
 gi|190359297|sp|A6LN55|DNLJ_THEM4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149793908|gb|ABR31356.1| DNA ligase, NAD-dependent [Thermosipho melanesiensis BI429]
          Length = 662

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 229/706 (32%), Positives = 377/706 (53%), Gaps = 47/706 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++E+  L +EI YH+  YY  + PII D EYD L ++   +   +P       PN 
Sbjct: 1   MKNIKEEIERLRKEIEYHNYRYYVLADPIISDEEYDRLLKKLIELEKKYPKF---SSPNS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+GG +     KV H+ P LSL+  +N  ++++F  RI R   +   NS+ +  E K
Sbjct: 58  PTQKVGGGVISGFEKVEHTTPMLSLDNTYNETEIKEFDNRIKRLLNR---NSVEYVCELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++IRYE G+F  A  RG+G  G+D++  ++ I +IP  L       IEVRGE+++
Sbjct: 115 IDGISVSIRYENGEFRQAISRGNGIIGDDITENVKKIKSIPLRLFKKY--TIEVRGEIFM 172

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAK 252
              +F   N      G +P+ANPRNAA+G +R+L+ +    R L+ F++ +        K
Sbjct: 173 PIKEFEKYNKIAEEEGLQPFANPRNAAAGTIRQLDSSIVAKRNLDSFIYYIVNPENYSLK 232

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q+E L  ++ LGF VN           I+ ++ +M   R  L Y IDGLV KV+ F  Q
Sbjct: 233 TQWEALDFLKKLGFKVNRQSILCKNVECIIDFWKKMTKERKNLDYWIDGLVIKVNNFEFQ 292

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K LGE ++SPRW I+ KF   +  T+++D+++ +GR+GI+TPVA  EP+++ G ++  A+
Sbjct: 293 KILGETSKSPRWAIAFKFPAIKKKTKIIDVELNVGRSGIITPVAIFEPIDLDGTIVKRAS 352

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN +YI+            +DIR+GD V +++AG +IP+VV ++  +R    +    P 
Sbjct: 353 LHNFEYIQ-----------DKDIRIGDYVYIEKAGGIIPQVVSVVKEKRTGLEKEIKIPK 401

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C   V      K  +   A RC     C  +    L+ FVS+ AF+I G+G++ +D
Sbjct: 402 SCPVCNGPVG-----KLTEDEIAIRCLNP-HCPQKLKRHLEIFVSKSAFDISGIGEKIID 455

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
               ++     I+  ADIF L      +   +  I G G  S+  + + I K +   L R
Sbjct: 456 KIVDAK----LIKDIADIFYL------TPFDLAQISGLGQKSIAKILEQIEKSKKTPLNR 505

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            I  LGI  VG + ++ LA+ + + +  +             +  LI++  +G  IA++I
Sbjct: 506 VIVGLGIPMVGEKTSKILAEKFKNIEKLSSAT----------YDELIKIENIGPEIAKSI 555

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           V ++QN +    +  L K    ++   +   S +++      TG L+   R + ++ + +
Sbjct: 556 VTYFQNEKTKEIINKLKKAGV-NLEEKDVKKSDKLKGLTFAITGKLKSYTREEIKKIIEE 614

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            G  VS  +S KT+ +I G+ PGSKLEKA++L +KI++EE FL L+
Sbjct: 615 NGGKVSNSVSSKTNFLIAGEEPGSKLEKAKRLNIKIISEEDFLKLI 660


>gi|16803798|ref|NP_465283.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes EGD-e]
 gi|224499523|ref|ZP_03667872.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes Finland 1988]
 gi|224503316|ref|ZP_03671623.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL R2-561]
 gi|81508669|sp|Q8Y6D0|DNLJ_LISMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|16411212|emb|CAC99836.1| lmo1758 [Listeria monocytogenes EGD-e]
          Length = 671

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 368/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N EDL  F  RI      K  + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRIRD----KVGDDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+     +R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  ++   + +Y +E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCSSLEEVYAYIDEWTEKRADLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D           +   +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKKCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 Q----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNL----------KVADKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +          K             K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|255026038|ref|ZP_05298024.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J2-003]
          Length = 671

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 247/711 (34%), Positives = 367/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N EDL  F  RI      K  + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRIRD----KVGDDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+     +R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D           +   +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKKCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 Q----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNL----------KVADKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +          K             K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|16800936|ref|NP_471204.1| NAD-dependent DNA ligase LigA [Listeria innocua Clip11262]
 gi|81526387|sp|Q92AQ0|DNLJ_LISIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|16414371|emb|CAC97100.1| lin1870 [Listeria innocua Clip11262]
          Length = 671

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 366/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N +DL  F  RI      K  + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVEHDTPMLSLANAFNRDDLADFDRRIRD----KVGDDISYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L       IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTVGEDITANLRTIRSIPMKLKKAYS--IEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+     +R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  +    + +Y +E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCSNLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D           +   +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERTGSEKPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 ----MHLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNL----------KIADKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +          K             K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLENMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|323344237|ref|ZP_08084463.1| NAD-dependent DNA ligase LigA [Prevotella oralis ATCC 33269]
 gi|323094966|gb|EFZ37541.1| NAD-dependent DNA ligase LigA [Prevotella oralis ATCC 33269]
          Length = 665

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 214/706 (30%), Positives = 350/706 (49%), Gaps = 48/706 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L Q++  H+  YY  + P I D  +D +      +   +P   + +DPN P  +
Sbjct: 4   KQRISELRQQLHEHNYKYYVLNAPTISDQAFDFMMHELQDLEAKYP---KMDDPNSPTKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++N    +V H  P LSL   +N +D+ ++  ++ R              E K DG 
Sbjct: 61  VGSDLNSEFKQVAHKYPMLSLANTYNEQDVEEWFEQVARGLM---GEEFEVCCELKYDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196
            I++ Y  G+ V    RGDG  G+DV+  ++ I  IP VLS N  P   E+RGE+ +   
Sbjct: 118 SISLTYVDGQLVQGVTRGDGIHGDDVTENVKTIRAIPLVLSGNDYPHEFEMRGEILMPWK 177

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F  LN E  A     +ANPRNAASG L+ LN   +               ++   G YE
Sbjct: 178 VFEQLNAEREANEEPLFANPRNAASGTLKSLNSRLVASRHLDSYLYYMLGEQLPTDGHYE 237

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            + K +  GF ++ G+R+  +   I  +     + R  LP   DG+V KV+    Q+ LG
Sbjct: 238 NMMKAKHWGFKISAGMRKVKSLQQIYDFIKHWDTERKNLPIATDGIVLKVNSLRQQRALG 297

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++A T+L+++  Q+GRTG +TPVA +EPV + G  +  ATL+N 
Sbjct: 298 YTAKSPRWAIAYKFKAERACTKLVEVTYQVGRTGAVTPVANMEPVKLAGTTVKRATLNNA 357

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+IK             D+ VGD V V++ GE+IPK+V + +++R  DA+P SF + CP 
Sbjct: 358 DFIKSF-----------DLHVGDYVYVEKGGEIIPKIVGVALDKRPADAKPISFITHCPE 406

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + + R          AA+ C    AC  Q   R++HF++R A NI+ +G + +D +++
Sbjct: 407 CGTPLARYEGE------AAYYCPNDTACPPQIKGRIEHFIARKAMNIDSIGPETVDDYYR 460

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   AD++ +  +            G  + S   +   I   + +  ER +F+
Sbjct: 461 R----GLIHNAADLYNITVQDING-------AGNREKSALKIVRGIASSKQVPFERVVFA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   AR +A+++ +     +               L  V  VG++IA++++ ++
Sbjct: 510 LGIRFVGETSARLIARHFKNIDALMEA----------SLQDLTEVEGVGEVIAKSVIAYF 559

Query: 617 QNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            NP N   V  L             +   S ++  K +V +G      R + +  + Q G
Sbjct: 560 SNPINKEIVARLRNYGLQMALSEEQQAGSSDKLTGKSIVISGVFTHHSRDEYKALIEQNG 619

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
                 +S KT  ++ GDN G SKLEKA++LGV I++E+ FL +++
Sbjct: 620 GKNVGSISGKTSFVLAGDNMGPSKLEKAERLGVPIISEDDFLKMIE 665


>gi|171914081|ref|ZP_02929551.1| DNA ligase, NAD-dependent [Verrucomicrobium spinosum DSM 4136]
          Length = 669

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 242/714 (33%), Positives = 372/714 (52%), Gaps = 48/714 (6%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           + P  AL  E A   ++ L +EI +H+  YYQ + P I D  +DAL R    +  A P L
Sbjct: 1   MPPAAAL--ETASLRVAHLREEIEHHNRLYYQNAAPEISDQAFDALLRELQDLEKAHPSL 58

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
                P+ P  ++GG       ++ H +P +SL+  ++ E++R F  R+ +   ++    
Sbjct: 59  I---TPDSPTQRVGGTPLDGFKQIAHPVPMMSLDNTYSEEEMRDFFQRLVKGLGRE---K 112

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           +  T+EPK+DG  + +RYE G   YAA RGDG  G+D++  +R I  +P  L   +P+  
Sbjct: 113 VRCTIEPKVDGVAVAVRYEAGALKYAATRGDGRMGDDITQNLRTIRALPLRLPAKVPQTF 172

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEVY+++  F  +N E    G   +ANPRNA +G L++L+P     R L    +G+G
Sbjct: 173 EVRGEVYMTRAGFDKMNQEREEAGEPRFANPRNATAGSLKQLDPRLVAKRPLQVIFYGVG 232

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              E     Q ++ + +   G P+   +  A +   +++  +++   R  LPYD DG V 
Sbjct: 233 DVGEARLTSQDDIHKLLHDAGLPMAAHIWHAESADEVIAAIHQLDEKRKALPYDTDGAVV 292

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD F+ Q+ LG  +++PRW I++K+  +QA TRLL +DIQ+GRTG LTPVARL PV + 
Sbjct: 293 KVDAFAEQRDLGATSKAPRWAIAYKYQPEQAETRLLSVDIQVGRTGALTPVARLVPVFLS 352

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ ++NATLHN + I             +DIRVGD V++++AGE+IP VV +   +R  +
Sbjct: 353 GSTVSNATLHNFEEI-----------VRKDIRVGDFVIIEKAGEIIPAVVAVNKEKRTGE 401

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +    P  CP+CQS VV+D          A RCT    C  Q   RL+HF  R A +I 
Sbjct: 402 EKEVPVPVHCPVCQSPVVKDE------AQVAIRCTNP-NCPEQVKRRLEHFTHRGAMDIR 454

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG+Q +         A     PAD++ L      +T  +  +   G  S+ NL   + +
Sbjct: 455 GLGEQMVAQLVD----AHLAITPADLYDL------NTHALSKLERQGAKSIENLLKGLEE 504

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +  R IF LGI HVGA  ARSL  ++ +    A+               L++V  +
Sbjct: 505 SKKQAPWRLIFGLGILHVGASSARSLMDHFGAVDALARA----------SVEDLLKVQDI 554

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G I+AQ+I  ++Q P N   ++ L            +  S        V TGTL +  R 
Sbjct: 555 GGIVAQSIHGWFQVPANQALLDRLRSSGLQFDNPKTEQASDTFAGTSWVITGTLSE-SRE 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              E +   G  + + +S KT  ++ G+  GSKLEKA +LGVK+++E  F  +L
Sbjct: 614 VIAELIRTHGGKMVSSVSSKTTYLLAGEEAGSKLEKAAKLGVKVLSEADFRAML 667


>gi|319955749|ref|YP_004167016.1| DNA ligase [Cellulophaga algicola DSM 14237]
 gi|319424409|gb|ADV51518.1| DNA ligase [Cellulophaga algicola DSM 14237]
          Length = 666

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 217/708 (30%), Positives = 352/708 (49%), Gaps = 48/708 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           ++++++ +L   +  H+  YY    P I D ++D   +    +    P+     D   P 
Sbjct: 2   ESKQKIEALRIGLREHNYNYYVLDTPTISDYDFDMQLKELQDLEEKHPEF---YDATSPS 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +  +   + H     SL+  ++ EDL ++  RI R      D  + FT E K D
Sbjct: 59  LRVGGMVTKNFKTIVHDSRMYSLDNSYSKEDLEEWEKRIQRNLG---DVPVAFTCELKYD 115

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I+I YE G+ V A  RGDG  G+DV+  I+ I +IP  L  + P   ++RGE+ +  
Sbjct: 116 GASISITYENGQLVRALTRGDGFQGDDVTNNIKTIKSIPLQLKGDYPPKFDIRGEIVLPF 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  +N E I  G  PY NPRN ASG L+  +      R L   ++G+    +   + Q
Sbjct: 176 EGFAKMNAERIENGEDPYMNPRNTASGSLKLQDSALVAQRPLECLLYGIV-GEKTGIESQ 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           ++ML+K R  GF V    +   +   ++++       R  LPY+ DG+V KV+    Q++
Sbjct: 235 FQMLEKARVWGFKVPTVAQLCKSTDEVMAFVEYWDIHRHELPYETDGVVIKVNSLQYQEE 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++SPRW +++KF  +Q +T L +I  Q+GRTG +TPVA L PV + G  +  A+LH
Sbjct: 295 LGYTSKSPRWAMAYKFKAEQVATLLNEITYQVGRTGAITPVANLVPVLLAGTTVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I              DIR GD V V++ GE+IPK+V +   +R  ++ P  +   C
Sbjct: 355 NADQIAKF-----------DIREGDTVFVEKGGEIIPKIVGVDFAQRPSNSVPTKYIDHC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +      +  +  A H C     C  Q   R++H++SR A +IEGLG + +   
Sbjct: 404 PECNAEL------ERAEGDAKHFCPNFYGCPPQITGRIQHYISRKAMDIEGLGGETVALL 457

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           +K +     I+  AD++TL + Q         +      S  NL + +    +I  ER +
Sbjct: 458 YKEQ----LIKNYADLYTLTKEQVM------PLERMAGKSAENLVNGVKASVSIPFERVL 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ LAK Y +                     L++V  +G+ IA ++VE
Sbjct: 508 FALGIRFVGETVAKKLAKAYKNIDAL----------KVASVEELVKVDEIGERIANSVVE 557

Query: 615 FYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           F+QN  N   +E L              +N + E++ +  V +G  +K+ R + ++ +  
Sbjct: 558 FFQNETNQETIERLKSYGVQFELSADKLENQTEELKGQIFVVSGVFEKVSRDELKKLIED 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            G  V + +S KT  ++ GD  G SK  KA+ LGV I++E++FL LL 
Sbjct: 618 NGGKVGSSVSSKTTFLVAGDKMGPSKRTKAESLGVAIISEDEFLALLA 665


>gi|16329180|ref|NP_439908.1| NAD-dependent DNA ligase LigA [Synechocystis sp. PCC 6803]
 gi|7674015|sp|P72588|DNLJ_SYNY3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|1651660|dbj|BAA16588.1| DNA ligase [Synechocystis sp. PCC 6803]
          Length = 669

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 228/696 (32%), Positives = 366/696 (52%), Gaps = 49/696 (7%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
                YY    P++ DS YD L R    +    P+L     P+ P  ++G +       V
Sbjct: 16  KASYAYYVLDAPVMEDSVYDQLYRELQRLEAENPELI---TPDSPTQRVGEQPASQFRSV 72

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H+IP  SLE  +N+++L+++  R  R           +  E KIDG+ I + YE G  V
Sbjct: 73  AHNIPLYSLENAFNVQELQQWQERWQRI--APTIEKAEYVCELKIDGSAIALTYENGLLV 130

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
               RGDG +GE++S  I+ I +IP  L+  N P  +EVRGE ++   +F  +N E  A 
Sbjct: 131 RGVTRGDGTTGEEISQNIKTIRSIPVKLNLDNPPPTVEVRGEAFLPLEEFNRINHEREAQ 190

Query: 209 GRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF-AKGQYEMLQKMRCLGF 266
           G   +ANPRNAA+G LR+L+P  + +    FF + L    +    + Q++ L+ ++  GF
Sbjct: 191 GESLFANPRNAAAGTLRQLDPKIVHQRRLQFFAYTLHLPGQEDKIQSQWQALEYLKKAGF 250

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
            VN   +       +V+Y+ + +  R  LPY  DG+V K++++ LQ++LG   + PRW I
Sbjct: 251 MVNPHCQLCKGLDEVVAYFEDWEGARQRLPYMTDGVVVKINQYPLQRELGFTQKFPRWAI 310

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           + K+  ++  T +  I++ +GRTG +TP+A +EPV + G  +  ATLHN+D I+ L    
Sbjct: 311 ALKYPAEETPTVVKAIEVNVGRTGAVTPLAVMEPVQLAGTTVQRATLHNQDRIQEL---- 366

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                  DIRVGD V++++AGE+IP+VV ++   R  +  P+ FPS CP C S +VR L 
Sbjct: 367 -------DIRVGDTVIIRKAGEIIPEVVRVMTELRPENTTPYIFPSHCPACGSPLVRPLE 419

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
                  A  RC    +CSA     L H+ SR+A +I+GLG++ +    ++      +  
Sbjct: 420 E------AVIRCVNS-SCSAILQGSLIHWASRNALDIQGLGEKVVITLLENR----LVNS 468

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
            AD++ LQ  Q         +  F   S   L  +I   ++    R +F LGIRHVG   
Sbjct: 469 VADLYGLQVEQLLG------LERFAQKSAEKLIAAIEVSKSQPWSRILFGLGIRHVGQVN 522

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           A+ L++ + + +  +Q               L  V  +G  IA+A+V +++NP N   ++
Sbjct: 523 AKLLSQQFPTVEKLSQA----------SIPDLEGVYGIGPEIAEAVVNWFRNPGNQQLIQ 572

Query: 627 ALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
            L +       +     K  S +++ K  V TGTL  + R +AQE + Q G  V++ +S 
Sbjct: 573 DLEELGLVLANQGIDQTKTDSGKLKGKTFVLTGTLPNLSRLEAQELIEQSGGKVTSSVST 632

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           KTD +++GD PGSK  KA+ LG+K+++E +FL LL+
Sbjct: 633 KTDYVLLGDKPGSKAAKAESLGIKLLSEAEFLQLLE 668


>gi|315303635|ref|ZP_07874170.1| DNA ligase, NAD-dependent [Listeria ivanovii FSL F6-596]
 gi|313627998|gb|EFR96596.1| DNA ligase, NAD-dependent [Listeria ivanovii FSL F6-596]
          Length = 678

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 371/711 (52%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P N+
Sbjct: 11  KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLQIEAAHPEWV---TPESPSNR 67

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N +DL  F  RI      K    + +  E KIDG 
Sbjct: 68  VGGEVLEGFQKVAHDTPMLSLANAFNKDDLADFDRRIRD----KVGEDVAYMCELKIDGL 123

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG +GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 124 AVSLQYENGKYKQGATRGDGTTGEDITANLRTIRSIPMKLQKSYS--IEVRGEAFMPKRS 181

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+     +R L+ F++ +    E+       
Sbjct: 182 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVTTHSA 241

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  +T   + +Y +E    R+ L YDIDG+V K+++   Q+Q+G
Sbjct: 242 GLAMLETLGLKVNKERRLCSTLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNDLEQQRQMG 301

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  +  A+LHNE
Sbjct: 302 TTAKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVVTPTAVLEPVRVAGTTVGRASLHNE 361

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D           +   +DIR+GD VL+K+AG++IP+V+  I  ER  D +PF  P+ CP 
Sbjct: 362 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSIAEERTGDEEPFHMPANCPT 410

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 411 CGSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFT 463

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI + +  SLE+ +F 
Sbjct: 464 H----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEQSKQNSLEKLLFG 513

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA Y+ +                 D  +L R+  +G+ +A +IV ++
Sbjct: 514 LGIRHVGAKAAKSLAIYFETMDKLKLA----------DKETLTRINDIGEKMADSIVTYF 563

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      ++ L +          K             K +V TG L+++ R+ A+  + 
Sbjct: 564 ANEEVHNLLDELKRAGVNMTYTGPKLDDMSEEELVFAGKTVVLTGKLEQLTRNDAKALIE 623

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +E   +  L    
Sbjct: 624 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLIEYLPDEG 674


>gi|303231514|ref|ZP_07318244.1| DNA ligase (NAD+) [Veillonella atypica ACS-049-V-Sch6]
 gi|302513857|gb|EFL55869.1| DNA ligase (NAD+) [Veillonella atypica ACS-049-V-Sch6]
          Length = 666

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 228/708 (32%), Positives = 371/708 (52%), Gaps = 46/708 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L++E+++    YY    P + D EYD   R    +  A P+      P+ P  +
Sbjct: 4   KDRIEQLQKELTHAQYLYYVKDNPTMSDFEYDQKYRELVDLETAHPEYIV---PSSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G + +    KV H  P LSL  +++ +++R F  R+ +        +  + +E KIDG 
Sbjct: 61  VGIKADGPFEKVVHGRPMLSLSNVFSADEVRAFDQRVTKELG---HQTKAYVVELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  N PE IE+RGE Y+  ++
Sbjct: 118 AVNLHYENGIFVRAVTRGDGKVGEDVTANVRTIKSIPLYL-ENAPEFIEIRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P    +R L FF + +G  S      Q E
Sbjct: 177 FKRINEERDEEGVPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSESGANIHTQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L  +    F VN   R  NT   ++   N     R  LPYD DG+V KV++F+ Q+ LG
Sbjct: 237 LLHTLENFHFSVNPHYRVCNTIDEVIEAINYWGEKRHELPYDTDGMVIKVNDFNDQEMLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T + DI I +GRTG+LTP   LEPV + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETVVKDITINVGRTGVLTPTGELEPVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD VL+ +A E+IP+V+ ++  +R     PF+ P+ CP+
Sbjct: 357 DFI-----------TEKDIRIGDHVLIHKAAEIIPEVIRVLPEKRTGSEVPFTIPNRCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR          AA RCT    C A + E++ HF SRDA NI+GLG   ++    
Sbjct: 406 CESPAVRREGE------AAIRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I    D++ L                 G  S  NL  +I   ++  L+R +F 
Sbjct: 459 EK----LITNVVDLYHLTTESIMGM------DRMGKKSADNLVKAIADSKSRGLDRVLFG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A    S   F                 L+ V  +G  +A +I+E+ 
Sbjct: 509 LGIRLIGSKAAGTIANVVKSMDRFLTISK----------DELVAVEEIGPTMADSIIEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           ++P++I  + +L++         ++   +E+E + +V TG L+ + R +A + + + GA 
Sbjct: 559 EDPQHIKIINSLIEAGLKMDVDVQEAAGNEMEGEIVVLTGKLEVMGRSEAGKLLEKHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           V+  +S+KT +++ G++ GSKL KA +LG++++NEE+F+ LL+     
Sbjct: 619 VTGSVSKKTTLVVAGEDSGSKLTKANELGIRVINEEEFIELLKDLGEN 666


>gi|154492286|ref|ZP_02031912.1| hypothetical protein PARMER_01920 [Parabacteroides merdae ATCC
           43184]
 gi|154087511|gb|EDN86556.1| hypothetical protein PARMER_01920 [Parabacteroides merdae ATCC
           43184]
          Length = 666

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 224/709 (31%), Positives = 353/709 (49%), Gaps = 50/709 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            + ++ +L + +  H+  YY  S P I D E+D + +    +  + P+ A   DP+ P  
Sbjct: 3   VKDKIKALREALEQHNYNYYVLSAPTISDREFDEMMKELQVLEESHPEYA---DPHSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G +++    +V H  P LSL   ++ ++++ F  RI R      +       E K DG
Sbjct: 60  RVGSDLSKEFEQVVHKYPMLSLGNTYSEDEVKDFYERIARDL----NEPFEIVAELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195
           T I++ YE G+ V A  RGDG  G+DV+A ++ I ++P  L     P   E+RGE+ +  
Sbjct: 116 TSISLTYEDGRLVRAVTRGDGTRGDDVTANVKTIRSVPLKLMGDRYPATFEIRGEILLPW 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
            +F  LN E        +ANPRNAASG L++ NP  +               E+ A+  +
Sbjct: 176 AEFDRLNKEREEQEEPLFANPRNAASGTLKQQNPAVVAARKLDAYFYYLLGEELPAETHF 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + L+  R  GF + N +R  N+   I  Y       R  LP   DG+V KV+    Q+ L
Sbjct: 236 DNLEAARSWGFKIPNVIRVCNSLEDIYGYIAYWDVERKNLPVATDGIVLKVNSLRQQRNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA LEPV + G  +  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERAVTRLNSVSFQVGRTGAVTPVANLEPVLLAGTTVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFC 434
            D I+GL           D+ +GD+V V++ GE+IPK+V + V  R         F   C
Sbjct: 356 ADIIEGL-----------DLHLGDKVFVEKGGEIIPKIVGVDVEARGLLVGDKVRFIRSC 404

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + ++R          AAH C     C  Q   +++HFV+R A NI    +      
Sbjct: 405 PECGTPLMRPEGE------AAHYCPNEAGCPPQIKGKIEHFVTRRAMNINMGPET----- 453

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +    A  I+  AD++TL+         +  +  + D S  NL  S+ + + +  ER +
Sbjct: 454 VEDLYEAGYIKDTADLYTLEIAD------LLRLERWADKSARNLMASLEESKQVPFERVL 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           + LGIR VG  +A+ L   + S +   Q            +  L  V  +G+ IA++I+ 
Sbjct: 508 YGLGIRFVGETVAKRLVSAFHSMEQLEQA----------SFEDLTAVDEIGERIARSIIA 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++ + RN   V  L +         EK  N S +++   +V +GT  K  R + +  + Q
Sbjct: 558 YFADERNRTLVNRLKEYGLQMSVPEEKLANRSEKLKGLSIVISGTFAKHSRDEYKAMIEQ 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
            G   S  +S KTD I+ GDN G +KLEKA +LGVKI+NE++FL ++ +
Sbjct: 618 HGGKNSGSVSGKTDYILAGDNMGPAKLEKAAKLGVKIINEDEFLNMIAE 666


>gi|150005810|ref|YP_001300554.1| DNA ligase [Bacteroides vulgatus ATCC 8482]
 gi|237725408|ref|ZP_04555889.1| DNA ligase [Bacteroides sp. D4]
 gi|319640984|ref|ZP_07995691.1| DNA ligase [Bacteroides sp. 3_1_40A]
 gi|166215396|sp|A6L5G8|DNLJ_BACV8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149934234|gb|ABR40932.1| DNA ligase [Bacteroides vulgatus ATCC 8482]
 gi|229436095|gb|EEO46172.1| DNA ligase [Bacteroides dorei 5_1_36/D4]
 gi|317387362|gb|EFV68234.1| DNA ligase [Bacteroides sp. 3_1_40A]
          Length = 665

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 232/705 (32%), Positives = 356/705 (50%), Gaps = 48/705 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L +E+  H+  YY  + P I D E+D L R    +    P+     D N P  ++
Sbjct: 5   ERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G ++N +  +V H  P LSL   ++  ++ +F  R+ +      +       E K DGT 
Sbjct: 62  GSDINKNFTQVVHKYPMLSLANTYSETEVTEFYDRVKKSL----NEDFEICCEMKYDGTS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197
           I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL     PE  E+RGE+ +    
Sbjct: 118 ISLTYENGKLVRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPETFEIRGEILMPWVV 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  LN E  A     +ANPRNAASG L+  N   +                +   G YE 
Sbjct: 178 FEELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPCDGHYEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L++    GF +++  R+  T   +  +       R  LP   DG+V KV+    Q+ LG 
Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++KF  +QA TRL  +  Q+GRTG +TPVA L+P+ + G ++  A+LHN D
Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPIQLSGTVVKRASLHNAD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+GL           D+ +GD V V++ GE+IPK+V +  + R        F + CP C
Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKDARIMIGDKVKFITHCPEC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S++VR          AA+ CT   AC  Q   +++HF+SR A NI+GLG + +D F++ 
Sbjct: 407 GSKLVRYEGE------AAYYCTNDAACPPQIKGKIEHFISRRAMNIDGLGPETVDQFYQE 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 IR  AD++TL       T+ I N+   G+ S  N+   I + + +  ER +F+L
Sbjct: 461 ----GLIRDVADLYTL------KTSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG  +A+ +AK + S    A               +LI V  +G+ IAQ+I+ ++ 
Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADA----------SLDNLIHVDEIGEKIAQSILLYFA 560

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           NP+N   +E L           E       ++  K +V +G      R + +E + + G 
Sbjct: 561 NPKNRDIIERLRVAGVRLEADEEDTSEHTDKLAGKSIVISGVFAHHSRDEYKELIEKHGG 620

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
                +S KT  I+ GDN G SKLEKAQ+LGV I++EE+FL +++
Sbjct: 621 KNVGSISSKTSFILAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665


>gi|296285034|ref|ZP_06863032.1| DNA ligase [Citromicrobium bathyomarinum JL354]
          Length = 733

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 275/753 (36%), Positives = 410/753 (54%), Gaps = 74/753 (9%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E LS  +A  EL  L + I  H+  Y+    P I D EYDAL RR +A+  AFPDL R  
Sbjct: 9   EPLSEAEAANELMRLARTIRKHNRLYHAEDAPEITDQEYDALVRRNEALEAAFPDLVR-- 66

Query: 70  DPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            P+ P   +G E+    L KVTH++  +SL+  +N E++ +++ R+ RF   + D  I F
Sbjct: 67  -PDSPSKGVGHEVAGSPLSKVTHAVRMMSLDNAFNGEEVGEWVARVRRFLDLEVDTPIAF 125

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T E KIDG   ++RYEKG+ V AA RGDG  GEDV+A +  I  IP  L+ + P++ EVR
Sbjct: 126 TAEDKIDGLSCSLRYEKGQLVRAATRGDGQVGEDVTANVAHIADIPAQLTGDAPDVFEVR 185

Query: 189 GEVYISKNDFLALNDEMIAV---------------GRKPYANPRNAASGILRRLNPT-DI 232
           GEVY+ +  F  LN  ++                   + +ANPRNAA+G LR+ + +   
Sbjct: 186 GEVYMERAAFADLNTRLMDEARAAASEKGEEFDPAKARQFANPRNAAAGSLRQKDASVTA 245

Query: 233 TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR 292
            R L F+ HG G+ S++  + Q ++++ +   G PV+    +      ++ +Y  + S R
Sbjct: 246 KRPLRFWAHGWGEASQVPGETQTDVIRAIEAFGLPVSPQFTRVEGLDALLDHYETIASAR 305

Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352
             LPY+IDG+VYKVD    Q++LG  A++PRW ++HKF  ++A T L  IDIQ+GRTG L
Sbjct: 306 PDLPYEIDGVVYKVDRLDWQERLGFVAKAPRWALAHKFPAERAETTLEAIDIQVGRTGKL 365

Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412
           TPV RL PV +GG  +TN TLHN D I  L            +RVGDRVL++RAG+VIP+
Sbjct: 366 TPVGRLAPVLVGGVTVTNVTLHNRDEIARL-----------GLRVGDRVLIQRAGDVIPQ 414

Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472
           VV+ +  +     + F FP  CP C S  V + +          RCTGGL C AQ+LER+
Sbjct: 415 VVENLTPD--AQRERFEFPETCPECGSEAVAEEDE------VDVRCTGGLICPAQRLERM 466

Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGD 532
           KHFVSR A +IEG+G++ +  F +       +  PADIF L++R+     +I  + G+ D
Sbjct: 467 KHFVSRGALDIEGMGEKTIAEFLER----GWLESPADIFRLRKRRD----EILALEGWQD 518

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF------------ 580
            SV NL  +I  +R     R +F LGIRHVGA  AR L K     +              
Sbjct: 519 KSVDNLLAAIEAKRAPDAARLLFGLGIRHVGAVTARDLLKGLGDIRKLPGKAAEFHRYRI 578

Query: 581 ------AQEINNIIAHNNDDWLSLIRV--PLVGDIIAQAIVEFYQNPRNICAVEALLK-- 630
                  ++++   A   D    +  V    +G  +  A+ +F+    N    + L+   
Sbjct: 579 ENPRGEDEKVSPFNARMLDAVRRIYEVRADGIGTAVGHALADFFHEEHNRQVWDDLIGAE 638

Query: 631 ----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
               EV P +   E  V S +  K +VFTG L+ + R +A+    +LGA  +  +S KTD
Sbjct: 639 PGAGEVDPPVYEVE-TVESPVAGKTVVFTGKLETMSRDEAKAQAERLGAKAAGSVSAKTD 697

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +++ G   GSKL+KA++LG+++++E  +  ++ 
Sbjct: 698 LLVAGPGAGSKLKKAEELGIEVIDEAGWTEIVA 730


>gi|332884007|gb|EGK04287.1| DNA ligase [Dysgonomonas mossii DSM 22836]
          Length = 665

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 216/710 (30%), Positives = 349/710 (49%), Gaps = 49/710 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++Q + ++ +L +E++ H+  YY  S P I D E+D   +    +   +P+     DPN 
Sbjct: 1   MDQIKHQIDTLREELNKHNYDYYVLSAPTISDFEFDKKLKELTDLETQYPEYF---DPNS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G ++N S  +V H  P LSL   +   ++  F  R+ +      ++      E K
Sbjct: 58  PSQRVGSDINKSFKQVPHKYPMLSLGNTYTEAEITDFYNRVKKGL----NDDFDIVCELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
            DGT I++ Y  G+   A  RGDG  G+DV+A +R I +IP  L     P   E+RGE+ 
Sbjct: 114 YDGTSISLTYINGQLTQAVTRGDGVQGDDVTANVRTIRSIPLRLHGAGYPAEFEIRGEIL 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +  + F  +N E        +ANPRNA SG L++ +P  +               ++   
Sbjct: 174 MPWSVFDDINKERAEQEEALFANPRNAGSGTLKQQDPKIVASRKLDSYLYYLLGEDLPTD 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
           G YE L K +  GF +++  ++  T   I +Y +     R  LP   DG+V KV+  + Q
Sbjct: 234 GHYENLIKAKEWGFKISDATKKCKTLDEIFAYIHYWDKERKNLPVATDGIVLKVNSLTQQ 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K LG  ++ PRW I+ KF  +QA T L  +  Q+GRTG +TPVA L PV + G  +  A+
Sbjct: 294 KNLGFTSKFPRWAIAFKFQAEQAVTTLESVSYQVGRTGAITPVANLRPVKLSGTTVKRAS 353

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L+NEDYI  L           D+ + D+V V++ GE+IPK+  + V +R+       F  
Sbjct: 354 LYNEDYINSL-----------DLHINDQVYVEKGGEIIPKITGVDVAQRNIFDAKVEFIK 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +V+D         A + C   ++C  Q   R++HF++R A NI G  +    
Sbjct: 403 DCPECGTPLVKDEGE------AIYYCPNDVSCPPQIKGRIEHFLTRKAMNIAGGTET--- 453

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +    A  IR  AD++TL          +  +  + + S  NL DSI+   ++  ER
Sbjct: 454 --VEHLYNAGYIRNIADLYTL------KWQDVSRLERWAEKSAKNLIDSIHASVSVPYER 505

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F+LGIR+VG  +A+ LA  +                       L +V  +GD IAQ+I
Sbjct: 506 VLFALGIRYVGETVAKKLALAFPDIDLLQAAT----------IEDLTQVDEIGDRIAQSI 555

Query: 613 VEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           V+++ NP N+  +  L                 + +++   +V +GT +K  R + +  +
Sbjct: 556 VKYFSNPNNLEVINKLRTFGLRFELSESIIAQRTEKLKGLSIVISGTFEKYSRDEYKSMI 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            Q G   S  +S KT  ++ GDN G +KLEKA+ LG+ I+NE+ FL +L+
Sbjct: 616 EQNGGKNSGSISSKTSYVLAGDNMGPAKLEKAKSLGIPIINEDDFLKMLE 665


>gi|319762938|ref|YP_004126875.1| DNA ligase, nad-dependent [Alicycliphilus denitrificans BC]
 gi|330825018|ref|YP_004388321.1| DNA ligase [Alicycliphilus denitrificans K601]
 gi|317117499|gb|ADU99987.1| DNA ligase, NAD-dependent [Alicycliphilus denitrificans BC]
 gi|329310390|gb|AEB84805.1| DNA ligase, NAD-dependent [Alicycliphilus denitrificans K601]
          Length = 717

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 250/736 (33%), Positives = 381/736 (51%), Gaps = 73/736 (9%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++ +L  +++     YY   +P + D+EYD + ++  A+  A+P L     P+ P  ++ 
Sbjct: 22  KVEALRAQLNQWAHEYYVLDEPSVPDAEYDRVFQQLQALEGAYPALV---TPDSPTQRVI 78

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQK-KDDNSIFFTLEPKIDG 136
           G +   L  V H +  LS+    + E      F  RI R  +   +D  + +  EPK DG
Sbjct: 79  GAVMNGLAPVRHRVAMLSIRTETDTEASGAEAFDARIRRELKLAPEDPPVEYVAEPKFDG 138

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---------------------- 174
             +++RYE G+ V AA RGDG  GEDV+  IR I  IP                      
Sbjct: 139 LAMSLRYEHGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLQLSAPTLGADASSLPPEGA 198

Query: 175 -----RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP 229
                R      P ++EVRGEVY+ + DF  LN+     G K + NPRNAA+G +R+L+ 
Sbjct: 199 RFALGRPGGETAPPVLEVRGEVYMRRADFEQLNERQREKGDKTFVNPRNAAAGAVRQLDS 258

Query: 230 TD-ITRYLNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE 287
                R L+FF +GLG+          Y +LQ+++  GFPV   VR A    G+++++ +
Sbjct: 259 GIAAQRPLSFFAYGLGEVEGGPEFATHYALLQRLKAWGFPVAAQVRIALGAPGLIAFHQQ 318

Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347
           + + R  LPYDIDG+VYKV+  +LQ+QLG   R PRW ++HK+  ++  TR+  ID+Q+G
Sbjct: 319 IGAERDQLPYDIDGVVYKVNSLALQRQLGFVTREPRWAVAHKYPAQEMMTRVEGIDVQVG 378

Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407
           RTG LTPVARL PV +GG  +TNATLHN   ++            + +RVGD+V+V+RAG
Sbjct: 379 RTGKLTPVARLAPVFVGGVTVTNATLHNLFELRR-----------KRVRVGDQVIVRRAG 427

Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
           +VIP+VV ++   R      F  P  CPIC S VVR+           HRC+GGL C AQ
Sbjct: 428 DVIPEVVGVVPAPRASYVPNFRMPRQCPICASTVVREPGE------VNHRCSGGLFCPAQ 481

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
           + + + HF  R A +IEGLG++ +D           IR   D+F L          +  +
Sbjct: 482 RKQAVLHFAQRRAMDIEGLGEKLVDQLVD----GHVIRTLPDLFRL------DLPTLAGL 531

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
               + S  N+ D++ K +  +L RF+F LGIRHVG   A+ LA+++ +           
Sbjct: 532 DRMAEKSAQNVLDALQKSKQTTLPRFLFGLGIRHVGEATAKDLARHFGALDAIMDA---- 587

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSE 646
                     L++V  VG ++A++I  F+  P N   V  L +       G      +  
Sbjct: 588 ------GVDQLLQVNDVGPVVAESIHTFFAQPHNREVVGQLRECGVAWEEGEPTAGATLP 641

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K +V TGTL  + R +A++ +   GA V+  +S+KT  ++ G   GSKLEKAQ LG+
Sbjct: 642 LAGKTIVLTGTLPTLSRDEAKDMLEAAGAKVAGSVSKKTHYVVAGAEAGSKLEKAQALGI 701

Query: 707 KIMNEEQFLFLLQQYN 722
            +++E+    LL+   
Sbjct: 702 PVLDEDGLRALLRGEG 717


>gi|212693183|ref|ZP_03301311.1| hypothetical protein BACDOR_02690 [Bacteroides dorei DSM 17855]
 gi|212664288|gb|EEB24860.1| hypothetical protein BACDOR_02690 [Bacteroides dorei DSM 17855]
          Length = 665

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 231/705 (32%), Positives = 356/705 (50%), Gaps = 48/705 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L +E+  H+  YY  + P I D E+D L R    +    P+     D N P  ++
Sbjct: 5   ERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G ++N +  +V H  P LSL   ++  ++ +F  R+ +      +       E K DGT 
Sbjct: 62  GSDINKNFMQVVHKYPMLSLTNTYSETEVTEFYDRVKKSL----NEDFEICCEMKYDGTS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197
           I++ YE GK + A  RGDG  G+DV+  ++ I +IP VL     PE  E+RGE+ +    
Sbjct: 118 ISLTYENGKLLRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPEAFEIRGEILMPWVV 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  LN E  A     +ANPRNAASG L+  N   +                +   G YE 
Sbjct: 178 FEELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPCDGHYEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L++    GF +++  R+  T   +  +       R  LP   DG+V KV+    Q+ LG 
Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++KF  +QA TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN D
Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNAD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+GL           D+ +GD V V++ GE+IPK+V +  N R        F ++CP C
Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKNARIMIGDKVKFITYCPEC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S++VR          AA+ CT   AC  Q   +++HF+SR A +I+GLG + +D F++ 
Sbjct: 407 GSKLVRYEGE------AAYYCTNDAACPPQIKGKIEHFISRRAMDIDGLGPETVDQFYQE 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 IR  AD++TL       T+ I N+   G+ S  N+   I + + +  ER +F+L
Sbjct: 461 ----GLIRDVADLYTL------KTSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG  +A+ +AK + S    A                LI V  +G+ IAQ+I+ ++ 
Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADA----------SLDDLIHVDEIGEKIAQSILLYFA 560

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           NP+N   +E L           E       ++  K +V +G      R + +E + + G 
Sbjct: 561 NPKNRDIIERLRVAGVRLEADEEDTSGHTDKLAGKSVVISGVFAHHSRDEYKELIEKHGG 620

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
                +S KT  ++ GDN G SKLEKAQ+LGV I++EE+FL +++
Sbjct: 621 KNVGSISSKTSFVLAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665


>gi|312888786|ref|ZP_07748349.1| DNA ligase, NAD-dependent [Mucilaginibacter paludis DSM 18603]
 gi|311298661|gb|EFQ75767.1| DNA ligase, NAD-dependent [Mucilaginibacter paludis DSM 18603]
          Length = 675

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 211/711 (29%), Positives = 373/711 (52%), Gaps = 46/711 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  +A+ ++ +L  E+  H+  YY  + P I D ++D       A+   FP+ A   +P
Sbjct: 1   MSPTEAKNKIHTLSAELKQHNYNYYVLAMPTISDFDFDKKLEELAALEKQFPEFA---EP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE+      V H  P +SL   ++ ++L+ F  R+ +       +   +  E
Sbjct: 58  DSPTQQVGGEITKEFETVRHKWPMMSLGNTYSEQELQDFDQRVRKAIG----DDFEYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGE 190
            K DG  +++ YE+GK + A  RGDG  G+DV+A ++ I TIP+ L   N P+  E+RGE
Sbjct: 114 LKFDGLSMSLTYEQGKLIRAVTRGDGIQGDDVTANVKTIHTIPKKLDEGNYPDHFEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           V++ +  F  LN+E I     PYANPRN ASG ++  +  ++ R           T +  
Sbjct: 174 VFMHRKAFDRLNNERIEQNEMPYANPRNFASGTIKLQDSREVARRPLDCFLYFLYTDKPV 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K  ++ +  ++  GF V    +       +  +       R  L YDIDG+V KV+ ++
Sbjct: 234 FKTHWDSIMAVKSWGFHVCEHTKLCKNIDEVFEFIASWNEKRFDLSYDIDGIVLKVNSYA 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++K+  +QA T L  +  Q+GRTG +TPVA L+PV + G  +  
Sbjct: 294 QQQELGFTAKSPRWAIAYKYKAQQAETVLESVSYQVGRTGSVTPVANLKPVVLAGTTVKR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN + I  L           D+  GD V V++ GE+IPK++ +   +R PDA P ++
Sbjct: 354 ASLHNANEILRL-----------DLHEGDSVFVEKGGEIIPKIISVNPLKRKPDAAPIAY 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            + CP C + +VR          A H C     C  Q + +++HF+ R A NI+GLG + 
Sbjct: 403 ITHCPECGTELVRQEGE------ANHYCPNDEGCPPQIVGKMQHFIGRKAMNIDGLGDET 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  ++       +R  +DI+ L  R    + +++ +  FG+ S+ N+ + I K + +  
Sbjct: 457 IETLYQK----GFLRHISDIYDLHLR----SDELKQLGRFGEKSINNMMEGIEKSKQMPF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F +GIR+VG  +AR L  Y+ +  N  +           +   L  V  +G  IA+
Sbjct: 509 EKVLFGMGIRYVGETVARKLVAYFKNIDNLMKA----------NIEELTTVDEIGTRIAE 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQE 668
           ++V+++ +P ++  VE L  +    +   ++ V  S ++  K  + +G  +K  R + ++
Sbjct: 559 SLVDYWSSPEHVQQVEKLKAQGLQFVSNEKELVLASDKLSGKTFIISGVFEKYSRDELKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            + Q G  + + +S K + ++ GDN G +KLEKA +L + I+++++ L +L
Sbjct: 619 IIEQNGGKILSSISAKLNYLVAGDNMGPAKLEKANKLNIPIISDDELLTML 669


>gi|160914436|ref|ZP_02076651.1| hypothetical protein EUBDOL_00440 [Eubacterium dolichum DSM 3991]
 gi|158433594|gb|EDP11883.1| hypothetical protein EUBDOL_00440 [Eubacterium dolichum DSM 3991]
          Length = 664

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 228/708 (32%), Positives = 366/708 (51%), Gaps = 47/708 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L + +      YY   KP + D EYD   +    +   FP      DPN    +
Sbjct: 3   QQRILELRKILDRLAYEYYVLDKPSVSDQEYDRYYQELLKLEDEFPQY---RDPNSITQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  +  KV+H    LSL+  +N+EDL  F  R+ +  +     +  + +E K+DG 
Sbjct: 60  VGGVVLDAFEKVSHKRRMLSLDNAFNLEDLMAFDERVRQSVK-----NPEYVVELKMDGL 114

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G+FV A  RGDG  GEDV+  +R I +IP    +++   +EVRGEV + K  
Sbjct: 115 AISLHYHNGRFVQAVTRGDGLVGEDVTNNVRTIASIPMH--IDMEGDLEVRGEVIMPKKS 172

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F ALN++    G + +ANPRNAA+G +R+L+     +R L+ +++      +       E
Sbjct: 173 FEALNEQRRKQGEEEFANPRNAAAGSIRQLDSRIAASRKLDAYLYYFEGAQQHAMHTHEE 232

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ +  +   VN   +       +  +  EM   R+ LPY+IDG+V KV++      LG
Sbjct: 233 ALEALEAMRIKVNPLRKVCKNMQEVWQFIQEMSERRNDLPYEIDGMVLKVNDLHAWDLLG 292

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A++PR+ I++KF  ++  T+LLDI + +GRTG +TP A LEPV + G  ++ ATLHNE
Sbjct: 293 TTAKAPRYAIAYKFPAEEVVTKLLDIVLSVGRTGRITPNAVLEPVRVAGTTVSAATLHNE 352

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D IK            +D+R+ D V++++AG++IP+VV  +   R+     + FP  CP 
Sbjct: 353 DMIK-----------EKDVRINDDVIIRKAGDIIPEVVRSLPERRNGTQGIYKFPQICPF 401

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S++VR  +       AAH C     C A+ +  + HF SRDA NI+ LG ++++FF K
Sbjct: 402 CGSKLVRFADE------AAHYCMN-QDCPARIVRGMIHFASRDAMNIDTLGDKKIEFFHK 454

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +    DI+ L   ++    +I  + GF + S   +  +I   +   LE  +F 
Sbjct: 455 Q----GFLNTIEDIYELSLHKE----EILALEGFQEKSFQKMILAIEASKERPLEDLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG + AR LAK Y +  +                  L  +  +G + AQ+I  ++
Sbjct: 507 LGIREVGKKAARVLAKTYGNIDDLMAAEEA----------ELTAIKDIGVVTAQSIRAYF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
             P+N   +  L           E    S    K +V TGTLQ ++R++A+  + +LGA 
Sbjct: 557 AEPKNKELIAHLKGFGLRMDTDKEVIKESIFTGKTVVLTGTLQYLKRNEAKALLERLGAN 616

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           VS  +S+KTD++I G+  GSKL KA++LGV  M+EE F+  +     +
Sbjct: 617 VSGSVSKKTDLVIYGEASGSKLSKAKELGVATMDEEAFMKEVNANEKS 664


>gi|146301217|ref|YP_001195808.1| DNA ligase, NAD-dependent [Flavobacterium johnsoniae UW101]
 gi|190359257|sp|A5FE87|DNLJ_FLAJO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146155635|gb|ABQ06489.1| DNA ligase, NAD-dependent [Flavobacterium johnsoniae UW101]
          Length = 668

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 217/707 (30%), Positives = 367/707 (51%), Gaps = 46/707 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++ + +L +E++ H+  YY      I D ++D   +    + +  P+     D + P  
Sbjct: 3   IQETIQTLREELNQHNYNYYVLDNATISDYDFDIKLKELQDLENKHPEFF---DEDSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG +  +   + H     SL+  ++ EDL  +  RI R      + ++ +T E K DG
Sbjct: 60  RVGGTVTKNFKTIAHQYRMYSLDNSYSKEDLIDWENRIQRVLG---NVNLQYTCELKYDG 116

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I+I Y+ GK V A  RGDG  G++V+  I+ I +IP  L  + PE  ++RGE+ +   
Sbjct: 117 ASISISYQNGKLVQALTRGDGFQGDEVTNNIKTIKSIPLKLKGDYPERFDIRGEIILPFA 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F  +N E+I +G  PY+NPRN ASG L+  +  ++ +     +      + +  K Q+E
Sbjct: 177 GFEKMNQELIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLECLLYTVAGNNLPFKTQFE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+  R  GF V N  +  N+   +  + +     R  LPY+ DG+V KV+    Q++LG
Sbjct: 237 GLESARKWGFKVPNEAKLVNSMQEVFDFIDYWDVHRHKLPYETDGVVIKVNSIHSQEELG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  +QAST+L  I  Q+GRTG +TPVA LEPV + G ++  A+LHN 
Sbjct: 297 YTAKSPRWAIAYKFKSEQASTKLKSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNA 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DIR+ D V V++ GE+IPK++ + + +R  +++   + + CP 
Sbjct: 357 DQIEKL-----------DIRINDTVFVEKGGEIIPKIIAVDLEKRPENSEVTQYITHCPE 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C++ +VR+         A H C     C  Q + R++H++SR A +IEGLG + +   FK
Sbjct: 406 CETELVRNAGE------ANHYCPNFYGCPPQIIGRIQHYISRKAMDIEGLGGETVALLFK 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +      +   AD++ L+         I ++      S  NL + + K + I  E  +F+
Sbjct: 460 N----GLVHNYADLYELKVED------ILHLERMAQKSAENLVNGVEKSKEIPFESVLFA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG  +A+ LAK+Y +    +Q             + LI V  +G+ IA++++EF+
Sbjct: 510 LGIRFVGETVAKKLAKHYKNIDALSQA----------SLMDLILVDEIGERIARSVIEFF 559

Query: 617 QNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +N  N   +E L K             N + +   K  V +G   +  R + ++ +   G
Sbjct: 560 ENEENKIIIERLKKYGIQFETVERVNPNATEKFIGKTFVVSGVFSQFSRDELKKAIEDNG 619

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
             V + +S KTD ++ GDN G +KLEKA +L + I++E++F+  L +
Sbjct: 620 GKVGSSISAKTDFVVAGDNMGPAKLEKATKLNIPILSEDEFITKLNE 666


>gi|160872442|ref|ZP_02062574.1| DNA ligase, NAD-dependent [Rickettsiella grylli]
 gi|159121241|gb|EDP46579.1| DNA ligase, NAD-dependent [Rickettsiella grylli]
          Length = 674

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 249/697 (35%), Positives = 389/697 (55%), Gaps = 47/697 (6%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           + H+  YY    P+I D+ YD L R  +AI   +P+L     P+ P  ++G     +   
Sbjct: 20  NTHNYHYYILDAPLINDATYDTLFRELEAIEKRYPELI---TPDSPTQRVGSTPLTTFKH 76

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H++P LSLE  ++ +++  F  RI    Q     +I +  EPK+DG  +++ Y KG+ 
Sbjct: 77  VQHALPMLSLENAFSEKEVLAFNKRIQERLQ--TQEAIEYACEPKLDGIAVSLTYHKGQL 134

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEVRGEVYISKNDFLALNDEMIA 207
           + AA RGDGH GED++  IR I +IP  L        +EVRGEVYI K  F  LN+ +  
Sbjct: 135 IRAATRGDGHRGEDITLNIRTILSIPLKLQGQHYPNDLEVRGEVYIPKKKFQQLNEMLKK 194

Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLG 265
            G K + NPRNAA+G LR+LNP     R L FF H +G       A     +L + +  G
Sbjct: 195 KGEKMFVNPRNAAAGSLRQLNPKITAERPLAFFTHSIGIIKNGKLASTHTAILNQFQQWG 254

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
            P     + A      ++YY++++  R++LPY+IDG+VYKV+  +LQKQLG  +R+PRW 
Sbjct: 255 LPRCPQTQLAKNITAALAYYHKIQKERASLPYEIDGVVYKVNALALQKQLGFISRAPRWA 314

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           +++KF  ++AST++L I+ Q+GRTG LTPVARL+PV +GGA ++NATLHN D +K     
Sbjct: 315 LAYKFPAEEASTKILSIEFQVGRTGALTPVARLQPVFVGGATLSNATLHNMDEVKR---- 370

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  +DIR GD V+++RAG+VIP+VV +I  +R  + +P + P  CPIC S +++  
Sbjct: 371 -------KDIREGDTVIIRRAGDVIPEVVQVIKKKRPANTRPLTLPKQCPICCSAIIKVE 423

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                   A  RC+G L C  Q+ E +KHF SR A NIEGLG +       +      I+
Sbjct: 424 TE------AIARCSGALFCPLQRKEAIKHFASRQAMNIEGLGTKIAYQLVDT----GLIQ 473

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
             ++++ L  +Q  +      +  FG+ S   L+ +I   +  +L RF++SLGIR VG  
Sbjct: 474 DVSNLYHLTIKQLAA------LDHFGEKSAQKLHRAIQASKKTTLTRFLYSLGIRDVGIS 527

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A +LA+++ + +      + +          L  +P +G ++A  I +F+    N+  +
Sbjct: 528 TALNLAQHFQALKPIMDADSAL----------LQTIPDIGPVVATHIKKFFSEQHNLDVI 577

Query: 626 EALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           + LL              + +S    K +V TG+L  + R +A + + +LG  VS+ +S+
Sbjct: 578 KNLLAAGITWPKPEFIPPSQTSPFTGKNVVLTGSLSTLSREQATQLLQKLGTKVSSSVSK 637

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            TD +I GDNPGSKL +A  L + ++ E++FL LL++
Sbjct: 638 NTDYVIAGDNPGSKLTRAHALKLTVLTEKKFLELLKE 674


>gi|119386790|ref|YP_917845.1| DNA ligase, NAD-dependent [Paracoccus denitrificans PD1222]
 gi|166216224|sp|A1B9F5|DNLJ_PARDP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119377385|gb|ABL72149.1| DNA ligase, NAD-dependent [Paracoccus denitrificans PD1222]
          Length = 765

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 298/758 (39%), Positives = 441/758 (58%), Gaps = 63/758 (8%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           L P+  L ++ A  E + L +E++  +  YYQ   P I D+EYDA KRR + I   FPDL
Sbjct: 22  LPPVSGLDVKAAEAEHARLSEEVAQANLAYYQEDAPFISDAEYDASKRRLEEIEARFPDL 81

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           A S     P  ++G   +    KV H +P LSLE  ++  D+  F+ R+  F        
Sbjct: 82  AHSG---SPTAQVGAAPDTRFAKVPHRLPMLSLENGFSQGDVEAFVQRVRSFLNLASGAP 138

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184
           +  T EPKIDG  +++RYE G+ V AA RGDG  GE+V+A  R I  IP  LS +  PE+
Sbjct: 139 LEVTAEPKIDGLSLSLRYEGGRLVQAATRGDGAVGENVTANARTIADIPGQLSGDGYPEV 198

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGE Y+S  DF  LN    +   + +ANPRNAA+G LR+L+P+    R L FF +  
Sbjct: 199 LEIRGECYMSHEDFEKLN---QSETGRVFANPRNAAAGSLRQLDPSVTAARPLRFFAYAW 255

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G+ S  FA  Q E +++M+  GF  N   R   +   ++S + E++ +R+TL YDIDG+V
Sbjct: 256 GEVSASFAGTQMEAVRRMQAFGFQTNPLTRICASVSEMLSAWAEIEQMRATLGYDIDGVV 315

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKV++ + Q +LG R+ +PRW ++HKF  ++A TRL  IDIQ+GRTG L+PVARL PV +
Sbjct: 316 YKVNDLAYQARLGMRSTTPRWALAHKFPAERAWTRLEAIDIQVGRTGALSPVARLHPVTV 375

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG +++NATLHNEDYI G  A G  +RGG+DIR+GD V V RAG+VIPKV D+ + +R  
Sbjct: 376 GGVVVSNATLHNEDYIAGRGADGSEIRGGKDIRIGDWVEVYRAGDVIPKVADVDLAKRPS 435

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +A+P++FP+ CP C S  +R+         +  RCTGGL C AQ +E+L+HFVSR AF+I
Sbjct: 436 EAEPYAFPTTCPECGSPAIREEG------DSVRRCTGGLICPAQAVEKLRHFVSRAAFDI 489

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSI 542
           EGLG + ++  F+       I  PADIFTLQ R      T+++N  G+G+ S  +L+ +I
Sbjct: 490 EGLGAKLVEELFRD----GWIAEPADIFTLQDRYGPGQLTQLKNREGWGEKSAASLFQAI 545

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN----------------- 585
            KRR I L R +F+LGIRHVG   A+ LA++Y S++     ++                 
Sbjct: 546 EKRREIPLARLLFALGIRHVGEVAAQDLARHYGSWEALEIALDTARPAALAHRVAEDAAL 605

Query: 586 --------------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
                                     ++       W  LI    +G ++A ++ + + N 
Sbjct: 606 AEREAARAEGRRARPSEARAAALAQVDLSPEATAAWTGLIAADGIGPVLAMSLSDAFANE 665

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
           R   A++ L+  ++  +    +   S I  K LVFTGTL+K+ R +A+     LGA V+ 
Sbjct: 666 RERAAIDRLVSFLTV-LPPEARATDSAIAGKTLVFTGTLEKMTRAEAKARAEALGAHVAG 724

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +S KTD++I G   GSK +KA +LG+K+++E+++L +
Sbjct: 725 SVSAKTDLLIAGPGAGSKAKKAAELGIKVIDEDEWLAI 762


>gi|237709923|ref|ZP_04540404.1| DNA ligase [Bacteroides sp. 9_1_42FAA]
 gi|229456016|gb|EEO61737.1| DNA ligase [Bacteroides sp. 9_1_42FAA]
          Length = 665

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 231/705 (32%), Positives = 356/705 (50%), Gaps = 48/705 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L +E+  H+  YY  + P I D E+D L R    +    P+     D N P  ++
Sbjct: 5   ERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G ++N +  +V H  P LSL   ++  ++ +F  R+ +      +       E K DGT 
Sbjct: 62  GSDINKNFMQVVHKYPMLSLTNTYSETEVTEFYDRVKKSL----NEDFEICCEMKYDGTS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197
           I++ YE GK + A  RGDG  G+DV+  ++ I +IP VL     PE  E+RGE+ +    
Sbjct: 118 ISLTYENGKLLRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPEAFEIRGEILMPWVV 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  LN E  A     +ANPRNAASG L+  N   +                +   G YE 
Sbjct: 178 FEELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPCDGHYEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L++    GF +++  R+  T   +  +       R  LP   DG+V KV+    Q+ LG 
Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++KF  +QA TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN D
Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNAD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+GL           D+ +GD V V++ GE+IPK+V +  N R        F ++CP C
Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKNARIMIGDKVKFITYCPEC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S++VR          AA+ CT   AC  Q   +++HF+SR A +I+GLG + +D F++ 
Sbjct: 407 GSKLVRYEGE------AAYYCTNDAACPPQIKGKIEHFISRRAMDIDGLGPETVDQFYQE 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 IR  AD++TL       T+ I N+   G+ S  N+   I + + +  ER +F+L
Sbjct: 461 ----GLIRDVADLYTL------KTSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG  +A+ +AK + S    A                LI V  +G+ IAQ+I+ ++ 
Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADA----------SLDDLIHVDEIGEKIAQSILLYFA 560

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           NP+N   +E L           E       ++  K +V +G      R + +E + + G 
Sbjct: 561 NPKNRDIIERLRVAGVRLEADEEDTSGHTDKLAGKSIVISGVFAHHSRDEYKELIEKHGG 620

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
                +S KT  ++ GDN G SKLEKAQ+LGV I++EE+FL +++
Sbjct: 621 KNVGSISSKTSFVLAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665


>gi|294776463|ref|ZP_06741938.1| DNA ligase (NAD(+)) [Bacteroides vulgatus PC510]
 gi|294449660|gb|EFG18185.1| DNA ligase (NAD(+)) [Bacteroides vulgatus PC510]
          Length = 665

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 232/705 (32%), Positives = 356/705 (50%), Gaps = 48/705 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L +E+  H+  YY  + P I D E+D L R    +    P+     D N P  ++
Sbjct: 5   ERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G ++N +  +V H  P LSL   ++  ++ +F  R+ +      +       E K DGT 
Sbjct: 62  GSDINKNFTQVVHKYPMLSLANTYSETEVTEFYDRVKKSL----NEDFEICCEMKYDGTS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197
           I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL     PE  E+RGE+ +    
Sbjct: 118 ISLTYENGKLVRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPEAFEIRGEILMPWVV 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  LN E  A     +ANPRNAASG L+  N   +                +   G YE 
Sbjct: 178 FEELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPCDGHYEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L++    GF +++  R+  T   +  +       R  LP   DG+V KV+    Q+ LG 
Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++KF  +QA TRL  +  Q+GRTG +TPVA L+P+ + G ++  A+LHN D
Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPIQLSGTVVKRASLHNAD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+GL           D+ +GD V V++ GE+IPK+V +  + R        F + CP C
Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKDARIMIGDKVKFITHCPEC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S++VR          AA+ CT   AC  Q   +++HF+SR A NI+GLG + +D F++ 
Sbjct: 407 GSKLVRYEGE------AAYYCTNDAACPPQIKGKIEHFISRRAMNIDGLGPETVDQFYQE 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 IR  AD++TL       T+ I N+   G+ S  N+   I + + +  ER +F+L
Sbjct: 461 ----GLIRDVADLYTL------KTSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG  +A+ +AK + S    A               +LI V  +G+ IAQ+I+ ++ 
Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADA----------SLDNLIHVDEIGEKIAQSILLYFA 560

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           NP+N   +E L           E       ++  K +V +G      R + +E + + G 
Sbjct: 561 NPKNRDIIERLRVAGVRLEADEEDTSEHTDKLAGKSIVISGVFAHHSRDEYKELIEKHGG 620

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
                +S KT  I+ GDN G SKLEKAQ+LGV I++EE+FL +++
Sbjct: 621 KNVGSISSKTSFILAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665


>gi|88703478|ref|ZP_01101194.1| DNA ligase [Congregibacter litoralis KT71]
 gi|88702192|gb|EAQ99295.1| DNA ligase [Congregibacter litoralis KT71]
          Length = 674

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 229/712 (32%), Positives = 374/712 (52%), Gaps = 46/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +  R  + SL +++   +  YY    P + D EYD   R    +  A P+L    D 
Sbjct: 1   MPGDDIRNRVHSLREQLERWNHEYYILDSPTVPDQEYDGALRELQTLEEAHPEL---RDA 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G     +   V H +P LSL+  ++ E+L  F+ R+           +    E
Sbjct: 58  SSPTQRVGAAPLSAFSSVEHPMPMLSLDNAFSDEELAAFLKRVVDRLDVDSVPEL--VAE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PK+DG  +++ Y +G    AA RGDG  GED++  +R I ++P  L   + P ++E+RGE
Sbjct: 116 PKLDGIAVSLIYREGLLERAATRGDGTYGEDITLNVRTIRSVPLKLRGASCPALVEIRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSE 248
           +++ +  F A N+     G KP+ NPRNAA+G LR+L+      R L F  +  G    E
Sbjct: 176 IFMPRAGFEAFNEHARRHGEKPFVNPRNAAAGSLRQLDSKITARRPLEFCAYASGQHPEE 235

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            +    +++LQ     G P++    + +     + Y++ +   R  L +DIDG+VYKV++
Sbjct: 236 GWPGSHWDVLQLFASWGVPISRYAERLSGLDDCIDYFHRLGDERDALSFDIDGIVYKVND 295

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+ Q++LG  AR+PRW I+ KF  ++A T++  ++ Q+GRTG +TPVARLEPV +GG  +
Sbjct: 296 FAAQRELGFVARAPRWSIARKFPAQEAVTKVTGVEFQVGRTGAITPVARLEPVFVGGVTV 355

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L           ++  GD V+V+RAG+VIP+VV +I   R   + P 
Sbjct: 356 SNATLHNMDEIARL-----------NLHHGDSVVVRRAGDVIPQVVSVIAERREESSAPI 404

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+CQS V R          A  RCTGGL C+AQ    ++HF SR A +I+GLG+
Sbjct: 405 DAPPSCPVCQSPVERVAGE------ATLRCTGGLVCAAQLKAAVRHFASRRAMDIDGLGE 458

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++           +R  AD+F L++        + ++   G+ S   L  +I+  R  
Sbjct: 459 KIVEQLVDR----GLVRDVADLFKLEQ------GALLSLERMGEKSAAKLLAAIDASRQT 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L RFIF+LG+R VG   A +LA ++ + +            +  D   L+ VP VG ++
Sbjct: 509 TLPRFIFALGVREVGEATALALANHFGTLEAL----------SGADLDDLLEVPDVGPVV 558

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           A+ +  F++   N+  +  LL+             V   ++ +  V +G L+   R +A+
Sbjct: 559 AEHVHGFFRADANLGVLRRLLEAGIAWPAVAVAPEVGGALDGQVWVVSGKLESQSRDEAE 618

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +  LGA  +  +S KT +++ G   GSKL KA+ LGV++++E +FL  L+
Sbjct: 619 AALRALGARTAKSVSGKTTVLLAGPGAGSKLSKAESLGVEVISEAEFLTRLE 670


>gi|294791934|ref|ZP_06757082.1| DNA ligase, NAD-dependent [Veillonella sp. 6_1_27]
 gi|294457164|gb|EFG25526.1| DNA ligase, NAD-dependent [Veillonella sp. 6_1_27]
          Length = 667

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 231/704 (32%), Positives = 367/704 (52%), Gaps = 46/704 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L+QE+++    YY    P + D EYD   R    +  A P+      P+ P  +
Sbjct: 4   KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++  S  KV H  P LSL  +++ +++R F +R+ +           + +E KIDG 
Sbjct: 61  VGMKVEGSFEKVVHGRPMLSLSNVFSADEVRAFASRVEKELG---HKPSAYVVELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  + PE IEVRGE Y+  ++
Sbjct: 118 AVNLHYENGMFVRAVTRGDGRVGEDVTANVRTIKSIPLYL-EDAPEFIEVRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P    +R L FF + +G         Q E
Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEVGANIHSQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +LQ +    F VN   R   T   ++   N     R  LPYD DG+V KV+ F  Q+ LG
Sbjct: 237 LLQSLETFKFSVNPHYRVCKTIDEVIDAINYWGEKRHELPYDTDGMVIKVNSFEDQEVLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T L DI I +GRTG+LTP   LE V + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD V++ +A E+IP+V+ ++  +R     PF+ P+ CP+
Sbjct: 357 DFI-----------NEKDIRIGDHVIIHKAAEIIPEVIRVVPEKRTGSEVPFTIPNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR          AA RCT    C A + E++ HF SRDA NI+GLG   ++    
Sbjct: 406 CESPTVRREGE------AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     I    D++ L   Q  +          G  S  NL  +I   +   L+R ++ 
Sbjct: 459 NK----LITNVVDLYHLTVDQLVTM------DRMGKKSAENLVKAIADSKTRGLDRVLYG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A    S + F                 L+ V  +G  +A +IVE+ 
Sbjct: 509 LGIRLIGSKAAGTIANVVKSMERFLTITK----------EELVAVEEIGPTMADSIVEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q+P ++  +E L            +   +++E + +V TG L+ + R +A + +   GA 
Sbjct: 559 QDPAHVEIIEGLTAAGLKMTVDVVEAAGNQMEGEIVVLTGKLEVMGRSEAGKILEAHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           V+  +S+KT ++I G++ GSKL KA +LG+++MNEE+F+ LL++
Sbjct: 619 VTGSVSKKTTLVIAGEDSGSKLTKANELGIRVMNEEEFVELLRE 662


>gi|218248171|ref|YP_002373542.1| NAD-dependent DNA ligase [Cyanothece sp. PCC 8801]
 gi|254781307|sp|B7K0A2|DNLJ_CYAP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218168649|gb|ACK67386.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8801]
          Length = 674

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 225/696 (32%), Positives = 365/696 (52%), Gaps = 51/696 (7%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
             +  YY    PI+ DS YD L R    +   +P L     P+ P  ++G +       +
Sbjct: 21  KANYAYYVLDNPIMEDSVYDQLYRELQDLESQYPILI---TPDSPTQRVGDQPAAQFNSI 77

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H+IP  SLE  +N+++L+K+  R  R+ Q  + +   +  E KIDG+ + + YE G  +
Sbjct: 78  RHNIPLYSLENAFNLQELQKWEERWQRYDQVSNSD---YVCELKIDGSALALTYEDGILI 134

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
               RGDG +GE+++  +R I +IP  L+  N P  +E+RGE ++  N+F  LN E    
Sbjct: 135 RGVTRGDGITGEEITQNVRTIRSIPLKLTLENPPSRVEIRGEAFLPLNEFDRLNGERKQA 194

Query: 209 GRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP 267
           G   +ANPRNAA+G LR+L+   +  R L FF + L    +     Q+E L+ ++ +GF 
Sbjct: 195 GEPLFANPRNAAAGTLRQLDSKVVSERRLQFFAYTLHLPEDNSLSSQWESLEWLKKMGFL 254

Query: 268 VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
           VN   +   T   +  Y+   ++ R  LPY  DG+V K+++++LQ QLG   + PRW I+
Sbjct: 255 VNPNCQLCPTLEAVADYFRHWETARHDLPYMTDGVVVKINDYALQNQLGFTQKFPRWAIA 314

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
            K+  ++A TR+ +I + +GRTG +TP+A +EPV++GG ++  ATLHN D +  L     
Sbjct: 315 LKYPAEEAPTRVKEIIVNVGRTGAVTPMAIMEPVHLGGTIVQRATLHNSDRVSEL----- 369

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447
                 DIRVGD V++++AGE+IP+V+ ++   R P+++P+  PS CP C S +VR +  
Sbjct: 370 ------DIRVGDTVIIRKAGEIIPEVLRVLPELRLPNSRPYQMPSHCPECGSTLVRPVGE 423

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                 A  RC    +C A     + H+ SRDA +I GLG++ +    ++E     I   
Sbjct: 424 ------AVTRCVNS-SCPAILRGSVVHWASRDALDIRGLGEKIVSLLVENE----LITSI 472

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
           AD++ L         K+  +   G  S   L ++I   +  S  R ++ LGIR+VG   A
Sbjct: 473 ADLYQLTPE------KVAALDRMGTKSAQKLINAIEGSKRQSWPRVLYGLGIRYVGNVTA 526

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           + L   + S +  +Q              +L  V  VG+ IAQ++ ++++   N   +E 
Sbjct: 527 KLLTDNFPSVEVLSQA----------SVPTLASVYGVGEEIAQSVFDWFKIVENQTLIEQ 576

Query: 628 LLKEVSPSIGRHEKNVS-----SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
           L            + VS       I  K  V TGTL  ++R++A+  + + G  V+  +S
Sbjct: 577 LKIAGLQLENIASQAVSLTPSSGNIAGKTFVLTGTLPTLKRNEAKALIEKAGGKVTGSIS 636

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            KTD ++VG+  GSKL KAQ+LG+  ++E   L  L
Sbjct: 637 SKTDYLVVGEEAGSKLAKAQELGITQLSEADLLKFL 672


>gi|157691416|ref|YP_001485878.1| NAD-dependent DNA ligase LigA [Bacillus pumilus SAFR-032]
 gi|190359234|sp|A8FAQ1|DNLJ_BACP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157680174|gb|ABV61318.1| DNA ligase (NAD(+)) [Bacillus pumilus SAFR-032]
          Length = 668

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 236/718 (32%), Positives = 391/718 (54%), Gaps = 56/718 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A++ +  L + ++ ++  Y+   +P + D+EYDA  R   ++    PDL  +   
Sbjct: 1   MDKEAAKRRIEELHEILNQYNYEYHTLDRPSVPDAEYDARMRELISLEEEHPDLKAA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  +  KV H  P LSL   +N +DL  F  R+ +       + I + +E
Sbjct: 58  DSPSQRVGGAVLDAFQKVRHGTPMLSLGNAFNEQDLLDFDRRVRQAVG----DDIAYNVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I +IP  L +  P  IEVRGE 
Sbjct: 114 LKIDGLAVSLRYENGVFVRGATRGDGTTGEDITENLKTIRSIP--LKIKRPLSIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           ++ K  F ALN++ +    +P+ANPRNAA+G LR+L+      R L+ FV+ + +  EI 
Sbjct: 172 FMPKPSFEALNEKRLQNEEEPFANPRNAAAGSLRQLDTKIAAKRNLDIFVYSIAELDEIG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q E L  +  LGF  N   R   T   ++     +K+ R+   Y+IDG+V KVD  +
Sbjct: 232 VESQSEGLDLLDELGFKTNKERRTCQTIEEVIELIETLKTKRADFSYEIDGIVIKVDSLA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW +++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 QQEELGFTAKSPRWAVAYKFPAEEVVTKLLDIELSVGRTGVITPTAILEPVKVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED IK            +DIR+ D+V+VK+AG++IP+V  +++++R  + +PF  
Sbjct: 352 ASLHNEDLIK-----------EKDIRLLDQVIVKKAGDIIPEVAGVLIDQRTGEEKPFHM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTECPECHSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   FK +     +   +D++ L + +         +   G+ SV NL  SI + +  SL
Sbjct: 454 ITQLFKEQ----LVSRVSDLYRLTKEELI------QLERMGEKSVENLLRSIEQSKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA ++       Q               L+ V  +G+ +A 
Sbjct: 504 ERLLFGLGIRFIGSKAAKTLALHFGDIDQLKQATK----------EQLLEVDEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPS-----IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+V +++    +  +  L +               +   S    K +V TG L+++ R+ 
Sbjct: 554 AVVTYFEKEEILNLLNELKELGVNMTYTGPKPVKVEESDSYFAGKTIVLTGKLEEMARND 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           A+  +  LG  ++  +S+KTD++I G+  GSKL KA++L ++I +E   + +L++   
Sbjct: 614 AKAAIEALGGKLAGSVSKKTDLVIAGEAAGSKLTKAEELNIEIWDE---VKMLEELKK 668


>gi|238019226|ref|ZP_04599652.1| hypothetical protein VEIDISOL_01090 [Veillonella dispar ATCC 17748]
 gi|237863925|gb|EEP65215.1| hypothetical protein VEIDISOL_01090 [Veillonella dispar ATCC 17748]
          Length = 667

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 230/704 (32%), Positives = 365/704 (51%), Gaps = 46/704 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L+QE+++    YY    P + D EYD   R    +  A P+      P+ P  +
Sbjct: 4   KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++  S  KV H  P LSL  +++ +++R F  R+ +           + +E KIDG 
Sbjct: 61  VGMKVEGSFEKVVHGRPMLSLSNVFSADEVRAFANRVEKELG---HKPSAYVVELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  N PE IEVRGE Y+  ++
Sbjct: 118 AVNLHYENGMFVRAVTRGDGRVGEDVTANVRTIKSIPLYL-ENAPEFIEVRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P    +R L FF + +G         Q E
Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEEGASIHSQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+ +    F VN   R   T   ++   N     R  LPYD DG+V KV+ F  Q+ LG
Sbjct: 237 LLKSLESFKFSVNPHYRVCQTIDEVIETINYWDEKRHDLPYDTDGMVIKVNSFDDQEALG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T L DI I +GRTG+LTP   LE V + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD V++ +A E+IP+V+ ++  +R     PF+ P+ CP+
Sbjct: 357 DFI-----------NEKDIRIGDHVIIHKAAEIIPEVIRVVPEKRTGSEVPFTIPNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR          AA RCT    C A + E++ HF SRDA NI+GLG   ++    
Sbjct: 406 CESPAVRREGE------AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     I    D++ L   Q  +          G  S  NL  +I   +   L+R ++ 
Sbjct: 459 NK----LITNVVDLYHLTVDQLVTM------DRMGKKSAENLVKAIADSKTRGLDRVLYG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A    S + F                 L+ V  +G  +A +IVE+ 
Sbjct: 509 LGIRLIGSKAAATIANVVKSMERFMTITK----------EELVAVEEIGPTMADSIVEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q+  ++  +E L+           +   +++E + +V TG L+ + R +A + +   GA 
Sbjct: 559 QDSAHVEIIEGLIAAGLKMTVDVVEAAGNQMEGEIVVLTGKLEVMGRSEAGKILEAHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           V+  +S+KT ++I G++ GSKL KA +LG+++MNEE+F+ LL+ 
Sbjct: 619 VTGSVSKKTTLVIAGEDSGSKLTKANELGIRVMNEEEFVELLKD 662


>gi|294673321|ref|YP_003573937.1| DNA ligase (NAD(+)) [Prevotella ruminicola 23]
 gi|294473291|gb|ADE82680.1| DNA ligase (NAD(+)) [Prevotella ruminicola 23]
          Length = 674

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 210/718 (29%), Positives = 349/718 (48%), Gaps = 58/718 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ +  +  L +E+  H+  YY  ++P I D E+D +      +    P++A   DPN 
Sbjct: 1   MDEIK-RIEQLRKELHEHNYKYYVLNQPTIGDQEFDFMMHELQDLEAKHPEMA---DPNS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G ++N    +V H  P LSL   +N +D+  +   + +              E K
Sbjct: 57  PTQRVGSDLNEEFRQVEHKYPMLSLANTYNEQDVADWYESVKKGL---AGEDFEVCCEMK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--------- 184
            DG  I++ Y  GK   A  RGDG  G+DV+  ++ I +IP VL+               
Sbjct: 114 YDGLSISLTYVDGKLTQAVTRGDGVHGDDVTTNVKTIRSIPLVLTPPAAGDLFAAPAYPR 173

Query: 185 -IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243
             E+RGE+ +  + F  LN E        +ANPRNAASG L+    + +           
Sbjct: 174 EFEIRGEILMPWSVFERLNKEREEAEEPLFANPRNAASGTLKSQKSSLVASRQLDAYLYY 233

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               E+ A+G YE L+  R  GF ++ G+++  T   I  + N   + R  LP   DG+V
Sbjct: 234 LLGEELPAEGHYENLEVARSWGFKISEGMKKVKTLQQIYDFINYWDTERKKLPVATDGIV 293

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+    Q+ LG  A+SPRW I++KF  ++  TRL ++  Q+GRTG +TPVA ++PV +
Sbjct: 294 LKVNSIRQQRALGFTAKSPRWAIAYKFKAERVCTRLNEVTYQVGRTGAITPVANMDPVQL 353

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  ATL+NED+IK             D+ +GD V V++ GE+IPK+V + +++R  
Sbjct: 354 AGTTVKRATLNNEDFIKSF-----------DLHIGDYVYVEKGGEIIPKIVGVDIDQRPI 402

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            AQP  F   CP C + +VR          AA  C     C  Q   R++HF++R A NI
Sbjct: 403 IAQPVEFIKRCPECGTPLVRYEGE------AAWYCPNDSGCPPQIKGRIEHFIARKAMNI 456

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           + LG + +D +++       I   AD++ +  +Q           G    S   + + I 
Sbjct: 457 DSLGPETVDDYYRH----GLIHNIADLYDIDVQQING-------DGSRTKSAQRIVNGIA 505

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             + +  ER +F+LGIR VG   A+ LA+++ +                     L  +  
Sbjct: 506 ASKEVPFERVVFALGIRFVGETSAKLLARHFKNIDALMNA----------GIEELQEIEG 555

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKI 661
           +G+++A++I+ ++    N+  +E L               N+S ++  + +V +G     
Sbjct: 556 IGEVMAKSIITYFHTEENLKIIERLRNYGLQMELSEAQTANISDKLAGQSIVISGVFAHH 615

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            R + +  + Q G      +S KT  I+ G+N G SKL+KA++LG+KIM+EE+FL ++
Sbjct: 616 SRDEYKAIIEQNGGKNVGSISSKTSFILAGENMGPSKLQKAEKLGIKIMSEEEFLEMI 673


>gi|189347498|ref|YP_001944027.1| DNA ligase, NAD-dependent [Chlorobium limicola DSM 245]
 gi|254781283|sp|B3EFT6|DNLJ_CHLL2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189341645|gb|ACD91048.1| DNA ligase, NAD-dependent [Chlorobium limicola DSM 245]
          Length = 673

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 222/715 (31%), Positives = 364/715 (50%), Gaps = 50/715 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A  E++ L +EI  H+  YY  ++P+I D E+D L  +  A+    PDL     P
Sbjct: 1   MDRAMAADEIARLRKEIERHNYLYYVEAEPVISDYEFDRLLEQLIALERLHPDLV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++  S   V H  P LSL   +++E++  F  R+ R    +         E
Sbjct: 58  DSPSLRVGGQITRSFPSVRHREPMLSLSNTYSMEEVADFYRRVRRLLLDEGIGEQEMVAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI------- 184
            K DG  +++ Y  G  V  A RGDG  G+D++  +R I +IP  L  +  E        
Sbjct: 118 LKFDGVAVSLIYRNGLLVQGATRGDGVQGDDITVNLRTISSIPLRLETSASETLSGSDRE 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244
           IEVRGEV++ K DF  LN+         +ANPRNA +G L+  +  ++ R    FV    
Sbjct: 178 IEVRGEVFMPKEDFDRLNEGRPE--EDRFANPRNATAGTLKLQDSAEVARRRMTFVAYFL 235

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           K         ++ L+ +  LGF   +  R     H I  +  E    R  LPY+ DG+V 
Sbjct: 236 KGIGDQHMPHFDRLKLLGKLGFFTGDHYRLCPELHDIERFIGEWSEKRWKLPYETDGVVL 295

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K++   L ++LG  ++SPRW I++K+  +QA T LL +  Q+GR G +TPVA L PV + 
Sbjct: 296 KLNAVWLWERLGATSKSPRWAIAYKYPAQQAITELLGVVFQVGRLGTITPVAELRPVKLA 355

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ ++ +TLHN D I+ L            +RV DRV+V+++GEVIPK++ +  +     
Sbjct: 356 GSTVSRSTLHNFDEIERL-----------GVRVHDRVVVEKSGEVIPKIIRVAEDSGSLF 404

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           + P   P  CP C + + R  N        +  C     C AQ   R+ H+ SR+A +I+
Sbjct: 405 SVPIVVPERCPSCDTPLTRPENE------VSWYCPNEEGCPAQIRGRMLHYASRNAMDIQ 458

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
            LG   +D           ++ P D+++LQ  Q      +E +   G  S  NL  +I +
Sbjct: 459 SLGIALVDQLVGR----GLVKDPGDLYSLQLPQ------LEPLERMGTKSSINLVRAIEE 508

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R  S +R +++LGIRHVG   AR LA  Y  + +  +               L  VP +
Sbjct: 509 SRTKSYDRLLYALGIRHVGQATARELAGAYPYFASLHEAGE----------QELAEVPDI 558

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPS-IGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           G ++A++I++F+  P     ++ L +   P   G+ ++ V++  E + ++FTG L++  R
Sbjct: 559 GPVVARSIIDFFSKPWVQAMLDKLEQAGLPMRAGKEKEQVNNNFEGQSVIFTGGLERHVR 618

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +A+E V + G  + + +S+KT +++ G   GSKLE+A +LGV+++ E++F  +L
Sbjct: 619 QEAEEMVRERGGRIVSSVSKKTSLVVAGKEAGSKLERALKLGVRVIGEDEFEAML 673


>gi|194466912|ref|ZP_03072899.1| DNA ligase, NAD-dependent [Lactobacillus reuteri 100-23]
 gi|194453948|gb|EDX42845.1| DNA ligase, NAD-dependent [Lactobacillus reuteri 100-23]
          Length = 680

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 239/725 (32%), Positives = 384/725 (52%), Gaps = 50/725 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M ++Q  P++ L++++A+ E+  L  +++     YY+   P + D  YD   +R   +  
Sbjct: 1   MSEKQ-TPVKELTLQEAQDEIKPLRAKLTKWGKEYYEQDNPTVEDHVYDRAYQRLVQLEE 59

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP L      + P  ++GG     L KV H IP LS+  +++IE+L  F  R      +
Sbjct: 60  QFPQLV---SADSPTQRVGGATESQLTKVRHEIPMLSMGDVFSIEELMDFNQRQQE--NR 114

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             +    + LE KIDG  +++ YE GK V  + RG+G  GEDV+A +R I ++P  L   
Sbjct: 115 DVEVEPEYNLELKIDGLSLSLVYENGKLVQGSTRGNGAIGEDVTANVRTIKSVPAELPEP 174

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +   IEVRGE Y+ K  F  LN +  A G   +ANPRNAA+G LR+L+P     R L+ F
Sbjct: 175 LS--IEVRGECYMPKAAFAKLNAKREAEGLPVFANPRNAAAGSLRQLDPKVTAQRELDTF 232

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ + +  ++  K Q E L +MR LGF VN   +  +T   I  Y  E  + R  L Y I
Sbjct: 233 MYYVPEYQKLGVKTQAEALDRMRELGFNVNPNNQVVHTREEIEKYIEEYTAQRDKLTYGI 292

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV++   +  LG   + PRW I++KF  ++ +T + DI   +GRTG +TP A ++
Sbjct: 293 DGIVEKVNDLDTEVALGNTVKVPRWEIAYKFPPEEQATIVRDIVWTVGRTGNVTPTAVMD 352

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  ++ A+LHN DY+             +DIR+GD V + +AG++IP++  + + 
Sbjct: 353 PVQLAGTTVSRASLHNPDYLH-----------EKDIRIGDTVYLHKAGDIIPEISKVDLT 401

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  D+  +  P+ CP+C S +V            A RC   + C AQ  E L HF SR+
Sbjct: 402 KRPADSVEYEIPTKCPVCGSELVHLDGE------VALRCINPM-CPAQIKEGLAHFASRN 454

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NI+GLG + ++  +  E     I   A ++ L   Q  +      +  FG+ S  NL 
Sbjct: 455 AMNIDGLGPRIIEQLWDKE----LIHDVAGLYRLNHDQLLT------LDKFGEKSTANLL 504

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            SI+  RN S+ER +F LGIRHVGA+ AR + +++    +  +           D   + 
Sbjct: 505 TSIDNSRNNSVERLLFGLGIRHVGAKAARIIMEHFGDLDSLMKA----------DADEIS 554

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTG 656
            +  +G  I ++IV ++ N + +  ++ L +          R   N  SE   +++V TG
Sbjct: 555 AISGIGPTIGESIVTYFANQQVVKLIDELREVGVNFAYLGSRSNANPDSEWNGRRVVLTG 614

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L ++ R +A+ ++   GA V+  +S+KTDI+I G + GSKL KAQ LG+ + NE+QF  
Sbjct: 615 KLTEMTRGEAKSWLENHGAKVTGSVSKKTDIVIAGADAGSKLTKAQDLGIDVWNEQQFSQ 674

Query: 717 LLQQY 721
            +++ 
Sbjct: 675 AMKEE 679


>gi|74316642|ref|YP_314382.1| NAD-dependent DNA ligase [Thiobacillus denitrificans ATCC 25259]
 gi|123745545|sp|Q3SL40|DNLJ_THIDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|74056137|gb|AAZ96577.1| NAD-dependent DNA ligase [Thiobacillus denitrificans ATCC 25259]
          Length = 686

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 243/709 (34%), Positives = 370/709 (52%), Gaps = 52/709 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++    +   ++L +EI  H+  YY    P I D+EYD L    +A+  A P+L  +   
Sbjct: 1   MADRDVQARAAALRREIERHNYAYYVLDAPTIPDAEYDRLYHELEALEAAHPELVAA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI--EDLRKFITRIYRFWQK-KDDNSIFF 128
           + P  ++GG+       V H++P LS+    +      R F  R+ +       D  + +
Sbjct: 58  DSPTRRVGGQPLAGFKPVRHAVPMLSIRTETDTTAAGARAFDVRVRKELGLAPADPPVEY 117

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEV 187
             E K DG  I +RYE G  V AA RGDG +GEDV+  +R + TIP  L  +  P ++EV
Sbjct: 118 AAELKFDGLAINLRYEAGVLVAAATRGDGETGEDVTQNVRTVRTIPLRLHGDAPPAVLEV 177

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT 246
           RGEV++ ++DF   N +  A G+    NPRN A+G +R+L+P     R L+F+ +GLG+ 
Sbjct: 178 RGEVFMRRDDFERYNAQQRAAGKPTLVNPRNGAAGSIRQLDPAIAGQRPLSFYAYGLGEV 237

Query: 247 --SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                        L  ++ LG PV+      N    ++++++++ + R  LP+DIDG+VY
Sbjct: 238 VGWPDAPATHGATLDALQGLGVPVSAERCVCNGVDDLIAFHDDIAARRDQLPFDIDGVVY 297

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+ F+LQ++LG   R PRW ++HK+  ++  T +L I + +GRTG LTPVARL PV +G
Sbjct: 298 KVNAFALQRELGFLTREPRWAVAHKYPAQEQLTTVLGIGVHVGRTGALTPVARLAPVFVG 357

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D I             +D RVGD V+V+RAG+VIP++V  ++  R   
Sbjct: 358 GVTVTNATLHNQDEIDR-----------KDTRVGDTVIVRRAGDVIPEIVATVLERRPQP 406

Query: 425 AQP----FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
             P          CP C S VVR          A  RCTGGL C AQ+ + L HF SR A
Sbjct: 407 EPPRFNILQSYPVCPECGSHVVRLEGE------AVARCTGGLYCPAQRKQALLHFASRRA 460

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I+G+G++ +D     E     +R PAD++ L             +    + S  NL  
Sbjct: 461 MDIDGVGEKLVDQLVSRE----LVRTPADLYRLPLETLAG------LERMAEKSARNLIQ 510

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I   ++ +L RFI++LGIR+VG   AR LA+++ +                     L+ 
Sbjct: 511 AIETSKSTTLARFIYALGIRNVGETTARDLARHFGALDALLGANETA----------LLG 560

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQ 659
           V  VG I+AQ+I +F+  P N+  V  L             +     +  K LV TGTL 
Sbjct: 561 VRDVGPIVAQSIAQFFAEPHNLEVVGKLRALGVHWPETTGMQQSGGILSGKTLVLTGTLP 620

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            + R +A+E +   G  V+  +S+KTD ++ G+  GSKL KA++LGV I
Sbjct: 621 ALTRDQAKERIESAGGKVAGSVSKKTDYVVAGEEAGSKLAKARELGVTI 669


>gi|298372045|ref|ZP_06982035.1| DNA ligase, NAD-dependent [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274949|gb|EFI16500.1| DNA ligase, NAD-dependent [Bacteroidetes oral taxon 274 str. F0058]
          Length = 670

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 218/714 (30%), Positives = 357/714 (50%), Gaps = 46/714 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++     +++  L +EI  H+  YY  + P I D E+D   ++ +++  A+P+     D 
Sbjct: 1   MANTDIEQQIIKLRKEIEAHNHAYYVDNNPTISDFEFDMRLKQLESMEKAYPEYF---DK 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++G ++  S  ++ H  P LSL   ++  ++ +F  R+ +      +       E
Sbjct: 58  NSPTQRVGSDLTKSFKQIVHQYPMLSLANTYSEGEVTEFYNRVRKSL----NTDFDVVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I++ YE G+   A  RGDG  G+DV+A IR I +IP  L  + P   E+RGEV
Sbjct: 114 LKYDGASISLIYENGELAAAVTRGDGVRGDDVTANIRTIQSIPIRLCGDFPSRFEIRGEV 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
            +    F  LN E    G   +ANPRNAASG L+  NP+++ R             E+ A
Sbjct: 174 LMPFAVFDELNREKAENGEPLFANPRNAASGTLKLQNPSEVARRRLDSYLYYLLGEELPA 233

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           +  Y+ +   +  GF ++N +R   +   I  +     + R  LP   DG+V KV++   
Sbjct: 234 ETHYDNMMAAKTWGFKISNAIRCCRSLDEIFDFIRYWDTERRNLPVATDGIVLKVNDLRQ 293

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  A+SPRW I++K+  ++A TRL  +  Q+GRTG +TP+A LEPV + G  +  A
Sbjct: 294 QRNLGLTAKSPRWAIAYKYQAERALTRLNSVSYQVGRTGAVTPIANLEPVLLSGTTVKRA 353

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN D I GL           D+ +GD V V++ GE+IPK+  +    R        FP
Sbjct: 354 SLHNADIIAGL-----------DLHIGDMVFVEKGGEIIPKITGVDTEAREAYMPKVVFP 402

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C S +VR+ +       AAH C     C  Q   ++ HFVSR A +I GLG + +
Sbjct: 403 QCCPECGSALVRNEDE------AAHYCPNEDHCPPQIKGKILHFVSRKAMDIIGLGDETI 456

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
              F+       +   ADI+ L        + I  +   G+ S  N+ D I   + I   
Sbjct: 457 ALLFEKS----LVGNVADIYEL------KISDIAPLERLGEKSAQNIVDGIEASKQIPYP 506

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             IF+LGIR+VG  +A+ LAK + S +   +               LI+V  +G++IA++
Sbjct: 507 NVIFALGIRYVGETVAKRLAKAFPSIEQLEEAT----------LEQLIQVDEIGEVIARS 556

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +V+++    +   +  L           +   +S+ +E K +V +G   K  R + ++ +
Sbjct: 557 VVDYFAKEEHRQLISRLKAAGIRLAADEQPGHISALLEGKTVVISGVFAKHSRDEYKDMI 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            Q G   S  +S KT  ++ GDN G +KL+KAQ+LG++++ E++FL ++ +   
Sbjct: 617 EQNGGKNSGSISAKTSFVLAGDNMGPAKLDKAQKLGIRLVTEDEFLEMIAKQKD 670


>gi|303228999|ref|ZP_07315809.1| DNA ligase (NAD+) [Veillonella atypica ACS-134-V-Col7a]
 gi|302516413|gb|EFL58345.1| DNA ligase (NAD+) [Veillonella atypica ACS-134-V-Col7a]
          Length = 666

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 229/704 (32%), Positives = 365/704 (51%), Gaps = 46/704 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L++E+++    YY    P + D EYD   R    +  + P+      P+ P  +
Sbjct: 4   KDRIEQLQKELTHAQYLYYVKDNPTMSDFEYDQKYRELVDLETSHPEYIV---PSSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G + +    KV H  P LSL  +++ +D+R F  R+ +        +  + LE KIDG 
Sbjct: 61  VGIKADGPFEKVVHGRPMLSLSNVFSADDVRAFDQRVTKELG---HQTKAYVLELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  N PE IE+RGE Y+  ++
Sbjct: 118 AVNLHYENGIFVRAVTRGDGKVGEDVTANVRTIKSIPLYL-ENAPEFIEIRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P    +R L FF + +G  S      Q E
Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSESGANIHTQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L  +    F VN   R   T   ++   N     R  LPYD DG+V KV++F  Q+ LG
Sbjct: 237 LLHTLENFHFSVNPHYRVCKTVDEVIEAINYWGEKRHELPYDTDGMVIKVNDFDDQEVLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T + DI I +GRTG+LTP   LEPV + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETIVKDITINVGRTGVLTPTGELEPVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD VL+ +A E+IP+V+ ++  +R     PF+ P  CP+
Sbjct: 357 DFI-----------TEKDIRIGDHVLIHKAAEIIPEVIRVLPEKRTGSEVPFTIPDHCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR          AA RCT    C A + E++ HF SRDA NI+GLG   ++    
Sbjct: 406 CESPAVRRDGE------AAIRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I    D++ L                 G  S  NL  +I   ++  L+R +F 
Sbjct: 459 EK----LITNVVDLYHLTTESIMGM------DRMGKKSADNLVKAIADSKSRGLDRVLFG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A    S   F                 L+ V  +G  +A +I+E+ 
Sbjct: 509 LGIRLIGSKAAGTIANVVKSMDRFLTITK----------DELVAVEEIGPTMADSIIEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           ++P++I  +  L+          ++   +E+E + +V TG L+ + R +A + + + GA 
Sbjct: 559 EDPQHIEIINGLIDAGLKMDVDVQETAGNEMEGETVVLTGKLEVMGRSEAGKLLEKHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           V+  +S+KT ++I G++ GSKL KA +LG++++NEE+F  LL+ 
Sbjct: 619 VTGSVSKKTTLVIAGEDSGSKLTKANELGIRVINEEEFTELLRD 662


>gi|322437173|ref|YP_004219385.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX9]
 gi|321164900|gb|ADW70605.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX9]
          Length = 704

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 233/741 (31%), Positives = 363/741 (48%), Gaps = 74/741 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S     +++  L +++ +H+  YY    P + D +YD+L  R  A+    P++  S   
Sbjct: 1   MSKGSVEEQVKELREQLEHHEHLYYVMDTPELTDGQYDSLMNRLKALEAEHPEMVTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+      KV HS P LSL+  +N EDLR +  R+          ++ +T E
Sbjct: 58  DSPTQRVGGKPADGFQKVKHSRPMLSLDNAYNEEDLRAWDVRVRGGL--PGTEAVAYTCE 115

Query: 132 PKIDGTMITIRYE----KG-KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--- 183
            K+DG  + + Y      G +      RGDG +GEDV++ +R I +IP  +S    +   
Sbjct: 116 LKLDGLSLALHYRGASHDGSQLERGLTRGDGTTGEDVTSNVRTIRSIPLTISAAKLKAAG 175

Query: 184 ---IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFF 239
                EVRGE  +    FL +N+E  A G    ANPRNAA+G +R L P     R L+F+
Sbjct: 176 LPMEFEVRGECVMPHAAFLKMNEEFEAAGLAAKANPRNAAAGTIRTLEPNIVAQRRLDFY 235

Query: 240 VHGL--GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            + L   +  E+    Q E L  +   G  VN  V   ++  G+  +    + +R +L Y
Sbjct: 236 AYFLLQAEGGEMLLGSQSEALTALGKAGMRVNPQVATVDSIDGVWEFIQRCEPLRDSLGY 295

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KVD+ + Q++LG   ++PRW I++KFA +   T+L  +  Q+GRTG +TPVA+
Sbjct: 296 EIDGIVIKVDKAAQQRRLGFTGKAPRWAIAYKFAARAGVTKLEGVAFQVGRTGKVTPVAQ 355

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           L PV IGG  +  ATLHN D I  L            +R+GD V V+R G+VIPK+  ++
Sbjct: 356 LSPVFIGGTTVKRATLHNPDEIVRL-----------GVRIGDFVSVERGGDVIPKITGVV 404

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + +     Q   FP  CP C S +V++            RC    +C A+  E L HF +
Sbjct: 405 LEKPRG-TQEIVFPECCPACGSALVKEEGE------VDWRCVNA-SCPARLREELIHFGA 456

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPA-------------------FSIRIPADIFTLQRRQQ 518
           R   NIEGLG   +       + A                     +R  AD++ L + Q 
Sbjct: 457 RGVMNIEGLGDAMVGQLLGQVEDAVDETDIEKEEAAAPVTVREPLVRSIADLYRLTKEQL 516

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578
                   +   GD S   L D I K +   L R +  LGIRHVG   A  LA ++ + +
Sbjct: 517 VG------LERVGDKSAQALLDEIAKSKKAPLSRVLLGLGIRHVGQRTAELLASHFGAIE 570

Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638
                              L++V  +G I+A  + +F+   +N   V+ LL E+   +  
Sbjct: 571 PLMGATQ----------DELVQVNEIGPIVAATVHDFFAQEQNQALVKELL-EIGLEMKA 619

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
            ++  ++ +E    V TGTL  + R  A+E +   G  VS  +S+KTD ++ G++ GSKL
Sbjct: 620 EKRVTTTVLEGLTFVLTGTLPTLTREIAKEKIEAAGGRVSGSVSKKTDYVVAGEDAGSKL 679

Query: 699 EKAQQLGVKIMNEEQFLFLLQ 719
           EKA+ LGVK+++E   L LL+
Sbjct: 680 EKAESLGVKVVDEAGLLELLE 700


>gi|328885211|emb|CCA58450.1| DNA ligase [Streptomyces venezuelae ATCC 10712]
          Length = 726

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 218/736 (29%), Positives = 353/736 (47%), Gaps = 61/736 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR++ + L ++I  H   YY   +P+I D E+D L R  +A+   +P+L     P+ 
Sbjct: 9   PAEAREKHAELAEQIEEHRFRYYVKDQPVISDGEFDKLLRALEALEEEYPEL---RTPDS 65

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G+       V H    LSL+  ++ E+L  +  R+ R     D +   +  E K
Sbjct: 66  PTQKVAGQYETDFTSVEHRERMLSLDNAFDDEELTTWADRVARDVGTPDFH---YLCELK 122

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG +GED++  +R I  IP  L  +  P+++E+RGEVY
Sbjct: 123 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIADIPERLRGDRVPDLVEIRGEVY 182

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                F  LN  ++  G KP+ANPRNAA+G LR+ +P    +R L+  VHG+G       
Sbjct: 183 FPMEAFEGLNARLVEAGDKPFANPRNAAAGSLRQKDPKVTASRPLHMVVHGIGAREGFDI 242

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               +  + +   G P     +   +   +  +       R ++ ++IDG+V K+DE  L
Sbjct: 243 SRLSDTYELLHEWGLPTAKHNKVVGSLGEVREFIAYFGENRHSVEHEIDGVVVKLDEIPL 302

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  AR+PRW I+ K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ +  A
Sbjct: 303 QGRLGSTARAPRWAIAWKYAPEEVNTKLIDIKVGVGRTGRVTPYAQVEPVTVAGSEVEFA 362

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN++ +K            + + +GD V++++AG+VIP+++  + + R    + F  P
Sbjct: 363 TLHNQEVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMP 411

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK--- 488
           + CP C + +         +     RC     C AQ  ERL     R   +IE  G    
Sbjct: 412 AECPECGTPLKAM-----KEGDIDLRCPNARTCPAQLRERLFFLAGRQCLDIENFGAVAA 466

Query: 489 ---------------QQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTK-----IEN 526
                           + D F  + +    I+         L RR   +  +       N
Sbjct: 467 AALTRPLEPAEPPLVDEGDLFDLTIEQLLPIKAYVLDPDSGLPRRDPKTGEEKIVTVFAN 526

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             G    +   + ++I   +   L RFI  L IRHVG   A +LA+ + S +   Q    
Sbjct: 527 QKGEPKKNALAMLENIAAAKTRPLARFINGLSIRHVGPVAAEALAREFRSLERIEQASE- 585

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVS 644
                      L  V  VG IIA A+ +++    +   V                E    
Sbjct: 586 ---------EELAAVDGVGGIIAAAVKQWFSEEWHREIVRKWRAAGVSLEDEGAGEDVGP 636

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TGTL+   R  A+E +  LGA V+  +S+KT  ++VG+NPGSK +KA QL
Sbjct: 637 RPLEGLTVVVTGTLENFTRDGAKESLQSLGAKVTGSVSKKTSFVVVGENPGSKYDKAMQL 696

Query: 705 GVKIMNEEQFLFLLQQ 720
            V +++E+ F  LL+Q
Sbjct: 697 KVPVLDEDGFKVLLEQ 712


>gi|317495223|ref|ZP_07953593.1| DNA ligase [Gemella moribillum M424]
 gi|316914645|gb|EFV36121.1| DNA ligase [Gemella moribillum M424]
          Length = 663

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 241/708 (34%), Positives = 387/708 (54%), Gaps = 48/708 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  ++E+  L   ++ +   YY    P I D+EYD L ++ + +   +P+       N 
Sbjct: 1   MEHIKEEIFKLVALLNKYSYDYYVEDNPQISDTEYDTLYKQLEKLEQEYPEFILD---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G  +     KV H +P LSL   ++IEDLR F +RI +      D+SI +  E K
Sbjct: 58  PTQRVGDRVLDEFEKVIHKVPMLSLSNTFSIEDLRDFDSRISK---LSSDDSIEYICELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+I YE GK V AA RGDG  GE+V+  I+ I +IP   +L   +  EVRGEVY+
Sbjct: 115 IDGLAISINYENGKLVSAATRGDGMVGENVTENIKTIFSIP--KTLKTKKSFEVRGEVYL 172

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            K  F  LN E        +ANPRNAA+G LR+L+                   +     
Sbjct: 173 PKKSFELLNKEREENNEVLFANPRNAAAGSLRQLDSKIT-AKRRLSAFIYSVVGDENINS 231

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q   L     +G PVN   +   T   +V Y    +  +  LPY+IDG+V KV+ +SLQ+
Sbjct: 232 QKMALTVAADVGLPVNPNFKLCKTIDEVVDYIMYWEEHKQDLPYEIDGIVIKVNSYSLQE 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           ++G   +SPRW  ++KF E++ +T+LLDI++ +GRTGI+TPVA L P+NI G+ ++ A+L
Sbjct: 292 EIGSTQKSPRWATAYKFPEEELATKLLDIELSVGRTGIITPVAVLNPINISGSTVSKASL 351

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+D I  L           DI +GD V+VK+AGE+IPKVV ++   R  +++ +  P+ 
Sbjct: 352 HNKDIIDEL-----------DIHIGDMVVVKKAGEIIPKVVRVVEELRLANSEKYVMPNI 400

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C+S+          +            C  Q + ++ HF SR+A NIEGLG + +  
Sbjct: 401 CPSCESKTFTKEGDPFTR-------CLNPDCPEQNIRKIIHFASREALNIEGLGDKVVAT 453

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            ++       I+   D+F+L R       K+  +   GD SV NL ++I   +  SL++ 
Sbjct: 454 LYEK----GIIKHTIDLFSLDR------NKLVELERMGDKSVDNLLNAIENSKQSSLDKV 503

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGI +VG +  + LA+YY +  NF++               L+ +P +G I A++IV
Sbjct: 504 IFALGILNVGKKAGKILAEYYKNLTNFSKAT----------VDELLELPDIGLITAESIV 553

Query: 614 EFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++  N  N+  +  L++   +P      KN+ +    K +V TG L ++ R++A+EY+ +
Sbjct: 554 DYLSNDNNLRFINELIEIGMNPQYEIQNKNIDNIFSGKTIVLTGKLVELTRNEAKEYLER 613

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            GA V+  ++ KTD +I G+  GSKL KA+QLG+++++E++F+ ++++
Sbjct: 614 FGAKVTGSVTSKTDYVIAGEKAGSKLAKAEQLGIQVLSEDEFIDIMKE 661


>gi|120611505|ref|YP_971183.1| DNA ligase [Acidovorax citrulli AAC00-1]
 gi|166215380|sp|A1TR21|DNLJ_ACIAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120589969|gb|ABM33409.1| DNA ligase, NAD-dependent [Acidovorax citrulli AAC00-1]
          Length = 732

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 259/749 (34%), Positives = 380/749 (50%), Gaps = 89/749 (11%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
             ++L  ++      YY    P + D+EYD + +   A+  A P+L     P+ P  ++ 
Sbjct: 22  RAAALRAQLHQWAHQYYVLDAPTVPDAEYDRVFQALQALETAHPELV---TPDSPTQRVI 78

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKDD-NSIFFTLEPKIDG 136
           G +   L  V H++P LS+    + E      F  R+ R  +   D   + +  EPK DG
Sbjct: 79  GAVMEGLTPVRHTVPMLSIRTETDTEASGAETFDARVRRELKLAPDAPPVEYVAEPKFDG 138

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI----PRVLSLNIPEIIEVRGEVY 192
             +++RYE G+ V AA RGDG  GEDV+  IR I  I    P      +P ++EVRGEVY
Sbjct: 139 LAMSLRYENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLPTGGRYGVPPVLEVRGEVY 198

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSE--- 248
           + + DF  LN+     G K + NPRNAA+G +R+L+      R L+FF +GLG  +    
Sbjct: 199 MRRADFDRLNERQREAGGKTFVNPRNAAAGAVRQLDSGIAAQRPLSFFAYGLGDITPAAE 258

Query: 249 --IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   ++ML++++  GFPV   VR A     +V+++ E+ + R  LPYDIDG+VYKV
Sbjct: 259 GGPDFATHFDMLRQLKAWGFPVAAQVRTARGASELVAFHQEVGASRDQLPYDIDGVVYKV 318

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG   R PRW ++HK+  ++  TR+  ID+Q+GRTG LTPVARL PV +GG 
Sbjct: 319 NSLALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKLTPVARLAPVFVGGV 378

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV------------- 413
            +TNATLHN   I+            + +RVGD+V+V+RAG+VIP+V             
Sbjct: 379 TVTNATLHNLFEIRK-----------KGVRVGDQVIVRRAGDVIPEVVGTVPAALLPVAG 427

Query: 414 ----------------------VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
                                        R P    F  P  CPIC S VVR+       
Sbjct: 428 ALQGSDALADAASGADGTAPGADAARAAPRSPYVPNFRMPRQCPICGSTVVREKGE---- 483

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A HRCTGGL C AQ+ E L HF  R A +IEGLG++ +D   +       IR   D++
Sbjct: 484 --ANHRCTGGLFCPAQRKEALLHFAQRRAMDIEGLGEKLVDQLVE----GQVIRTLPDLY 537

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L        T + ++    + S  N+  ++ K ++ +L RF+F LGIRHVG   A+ LA
Sbjct: 538 RL------GLTALSSLDRMAEKSAQNVLAALEKSKHTTLPRFLFGLGIRHVGEATAKDLA 591

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK- 630
           +++                       L+ V  VG ++A+AI  F+  P N   VE L   
Sbjct: 592 RHFGGLDAIMDA----------SVEQLLEVNDVGPVVAEAIHTFFAQPHNREVVEQLRAC 641

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            V+   G   +  +  +  K  V TGTL  + R  A++ +   GA V+  +SRKT  ++ 
Sbjct: 642 GVTWKEGPPAERATLPLAGKTFVLTGTLPTLSREDAKDRLEAAGAKVAGSVSRKTHYVVA 701

Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G+  GSKL KAQ+LGV +++E   L LLQ
Sbjct: 702 GEEAGSKLAKAQELGVPVLDEAGMLALLQ 730


>gi|313114130|ref|ZP_07799682.1| DNA ligase, NAD-dependent [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310623539|gb|EFQ06942.1| DNA ligase, NAD-dependent [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 666

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 222/716 (31%), Positives = 355/716 (49%), Gaps = 51/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E L +EQA+K +  L   I  ++  YY    P + D EYDAL R    +   FP L  +
Sbjct: 1   MELLELEQAKKRVEELRAVIEKNNRLYYDQDAPELEDFEYDALTRELKELEAQFPQLVTA 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P  K+GG  +  L KVTH++   SL   ++ ++LR F  R+             +
Sbjct: 61  ---SSPTQKVGGTASSKLPKVTHAVKMESLLDAFSYDELRDFDRRVRE-----AGIEPEY 112

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG   ++ YE G+ V A+ RGDG  GEDV+A +RAI +IP+ L    PE +EVR
Sbjct: 113 VVEIKIDGLSCSLEYENGELVRASTRGDGVVGEDVTANVRAIRSIPKKLKDA-PEFLEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTS 247
           GEVY+    F  L  E    G  P+ NPRNAA+G LR+ +        L+ FV  + +  
Sbjct: 172 GEVYMPHGAFQKLCAEQELQGAAPFKNPRNAAAGSLRQKDARITGSRGLSIFVFNVQQIR 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   E L  ++ LG PV+      +     ++   ++   R+ L +D+DG V KV+
Sbjct: 232 GKTLTKHAESLDYLKSLGLPVSPRYHIVHDIEQAIAEIEQIGQNRAKLDFDMDGAVIKVN 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+ +  +G   + PRW I+ K+  +   T L  I++ +GRTG+LTP A  +PV + G  
Sbjct: 292 DFAQRDLMGSTNKFPRWAIAFKYPPEVKETTLRSIEVAVGRTGVLTPTACFDPVFLAGTT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHNED+I               + +GD + V++AG++IP+V+ +  +    DAQP
Sbjct: 352 VARATLHNEDFIHQF-----------GLCIGDTIQVRKAGDIIPEVIGVTHHA--EDAQP 398

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C + VV   +       AA RC      +      + HF SRDA +IEGLG
Sbjct: 399 YEMPTVCPSCGAPVVHLEDE------AALRCVNPECPAQAL-RNIIHFASRDAMDIEGLG 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
                   + +     +   ADI+TL R Q  +      +  F + S  NL ++I   + 
Sbjct: 452 TAVATQLVEKD----MVHSAADIYTLTREQLLT------LDKFKEKSADNLLNAIEASKQ 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L++ +F  GIR++G + A  LA+++ + Q   +               +  +   G +
Sbjct: 502 NNLDKLLFGFGIRNIGDKAAALLAEHFGTLQAVREA----------SAEQISEIDGFGGV 551

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +AQ++VEF+        V  L         + E     ++  K LV TGTL+ + R++A+
Sbjct: 552 MAQSVVEFFAKEGTTDLVHRLADAGLNMQWKGEPKGD-KLAGKTLVVTGTLETLSRNEAE 610

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             + + G   S  +S+KT  ++ G   GSKL KAQ LG+ ++ E +FL ++   N 
Sbjct: 611 ALIVKNGGKASGSVSKKTAYVVAGTAAGSKLTKAQVLGIPVLTEAEFLAMISDENI 666


>gi|332188479|ref|ZP_08390201.1| DNA ligase, NAD-dependent [Sphingomonas sp. S17]
 gi|332011491|gb|EGI53574.1| DNA ligase, NAD-dependent [Sphingomonas sp. S17]
          Length = 712

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 285/719 (39%), Positives = 408/719 (56%), Gaps = 56/719 (7%)

Query: 26  QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85
           +EI++H+  Y+    P I D++YDAL RR  AI  AFP L RS   + P  ++G      
Sbjct: 23  REIAHHNRLYHTEDAPEISDADYDALIRRNMAIEAAFPHLIRS---DSPNRQVGAAPAAH 79

Query: 86  LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145
           L KV H+ P  SL+  ++ E++ +FI R+ R+ +  DD  +  T EPKIDG   ++RY  
Sbjct: 80  LAKVAHARPMTSLDNAFSDEEVEEFIGRVRRYLKLPDDEPVTLTAEPKIDGLSCSLRYVD 139

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
           G+ V A  RGDG  GEDV+  +R I  IP+ L    P + EVRGEVY+SK DF ALN  +
Sbjct: 140 GRLVQALTRGDGTIGEDVTENVRTIADIPQSLPAPAPTVFEVRGEVYMSKVDFTALNARL 199

Query: 206 IA------VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
                      + +ANPRNAA+G LR+ NP     R L F  HG G+ SE+ A+ Q++M+
Sbjct: 200 AQEAAETGKEARQFANPRNAAAGSLRQKNPAITAGRPLRFLAHGWGEASEVPAETQFDMV 259

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           +  R  GFP+     +       ++ Y  +++ R+ LP+DIDG+VYKVD    Q +LG  
Sbjct: 260 ETWRRWGFPIAEAFARVPDAAAALAVYRTIEAQRADLPFDIDGVVYKVDRLDWQARLGIV 319

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            R+PRW I+HKF  ++A T L  IDIQ+GRTG LTPVARLE V +GG ++TNATLHN D 
Sbjct: 320 GRTPRWAIAHKFPAERAQTTLERIDIQVGRTGALTPVARLEAVTVGGVVVTNATLHNADE 379

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I+ L            +R GDRV+++RAG+VIP++  +    RH   +PF FP  CP C 
Sbjct: 380 IERL-----------GVRPGDRVVLQRAGDVIPQI--VENLTRHVAREPFVFPDHCPECG 426

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S   R             RCTGGL C AQ++ERL HFVSR AF+I GLG  +++ FF+  
Sbjct: 427 SLATRGEGE------VVIRCTGGLICPAQRVERLIHFVSRHAFDITGLGLVRVEEFFRD- 479

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I  PADIF L + ++    +        ++ V  L  +I+ RR+ISL+RF+F+LG
Sbjct: 480 ---GLIASPADIFRLAQHREALIQR----ERMSELVVDKLLAAIDARRDISLDRFLFALG 532

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL----------------IRVP 602
           IRHVG   AR LA+ ++S   F   I+  +    +   +L                  + 
Sbjct: 533 IRHVGEITARDLARRFVSMAGFRAMIDAALQVRAETVPALGEPERKFELRRQRAIVAAID 592

Query: 603 --LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
              +G  +A A+++F+    N   V+ LL EV+P+   H+    S++  K LVFTGTL+ 
Sbjct: 593 TPQIGPEVADALLDFFAEEHNRDVVDDLLSEVTPADVVHQTR-ESDVSGKTLVFTGTLET 651

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + R +A+     LGA VS  +S KTD++I G   GSKL+KAQ LG+ +++E  +  L+ 
Sbjct: 652 LSRDEAKAQAEALGARVSGSVSAKTDLVIAGPGAGSKLKKAQDLGIPVIDEAAWNALVA 710


>gi|121611375|ref|YP_999182.1| DNA ligase [Verminephrobacter eiseniae EF01-2]
 gi|166216275|sp|A1WRA7|DNLJ_VEREI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|121556015|gb|ABM60164.1| DNA ligase, NAD-dependent [Verminephrobacter eiseniae EF01-2]
          Length = 693

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 252/723 (34%), Positives = 382/723 (52%), Gaps = 50/723 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
                +   QA   + +L +++ +    Y+    P + D+EYD   +   A+  A P L 
Sbjct: 9   PDPAQMDPAQADARIRALREQLVHWAHQYHVLDAPSVPDAEYDRAFQALQALEAAHPALI 68

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKD-D 123
               P+ P  ++ G +   L  V H++P LS++   +      + F  R+ R     D D
Sbjct: 69  ---TPDSPTRRVQGAVLQGLTPVRHALPMLSIQTETDTGAGGAQAFDARVRRELGLTDAD 125

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
            +I + +EPK DG  + +RYE  + V AA RGDG  GEDV+  IR I  IP  L  + P 
Sbjct: 126 PAIEYVVEPKFDGLAMGLRYENRRLVQAATRGDGEIGEDVTHNIRTIRQIPLGLPDDAPA 185

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHG 242
           ++EVRGEVY+ + DF ALN    A   K + NPRNAA+G +R+L+      R L FF +G
Sbjct: 186 LLEVRGEVYMRRADFDALNQRQRAQSGKTFVNPRNAAAGAVRQLDANITAQRPLRFFAYG 245

Query: 243 LGKTSEIF-----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           LG  +         +  Y +LQ ++  GFPV   V  A+    + + + ++ + R  LPY
Sbjct: 246 LGAVTAPGEGGPAWRTHYALLQTLKSWGFPVAEQVGIAHGASQLAALHEQIGARRDALPY 305

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+VYKV+   LQ+ LG + R PRW ++HK+  ++  TR+  I++Q+GRTG LTPVAR
Sbjct: 306 DIDGVVYKVNALQLQRDLGFKTREPRWAVAHKYPAQEMPTRVEGIELQVGRTGKLTPVAR 365

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           L PV +GG  +TNATLHN   I+            + +RVGD V V+RAG+VIP+VV ++
Sbjct: 366 LAPVFVGGVTVTNATLHNLFEIRK-----------KQVRVGDTVTVRRAGDVIPEVVGVL 414

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
             +R      F  P+ CP+C S VVR+         A HRCTGGL C+AQ+ E L HF +
Sbjct: 415 PGQRSAYVANFRMPAHCPVCGSAVVREKGE------ANHRCTGGLFCAAQRKEALLHFAA 468

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A +IEGLG + +D    +E     +R   D++ L          +  +    + S  N
Sbjct: 469 RRALDIEGLGDKLVDQLVDAE----LVRGLPDLYRL------DLVALSALDRMAEKSAQN 518

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L D++ K R  +L RF+F LG+RHVG   A+ LA+++ +                     
Sbjct: 519 LLDALEKSRQTTLPRFLFGLGLRHVGEATAKDLARHFGTLDAIMNA----------SVEQ 568

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTG 656
           L++V  +G ++AQ++  F+Q P N   V  L    +    G   +  +  +  K +V TG
Sbjct: 569 LLQVSDIGPVVAQSLHCFFQQPHNREVVAQLRACGLRWPEGAPPERPAQRLAGKSVVLTG 628

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  + R  A++ +   GA V+  +S+KT  +I G   GSKL KA++LG+ +++E   L 
Sbjct: 629 TLPTLGRDAARDLLEAAGAKVTGSVSKKTSYLIAGAEAGSKLAKARELGIPVLDEAGMLA 688

Query: 717 LLQ 719
           LL 
Sbjct: 689 LLA 691


>gi|261854791|ref|YP_003262074.1| DNA ligase, NAD-dependent [Halothiobacillus neapolitanus c2]
 gi|261835260|gb|ACX95027.1| DNA ligase, NAD-dependent [Halothiobacillus neapolitanus c2]
          Length = 685

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 252/715 (35%), Positives = 374/715 (52%), Gaps = 48/715 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
            A S +  R  L +L  EI  H+  YY    P I D+ +D L R    I  A P+     
Sbjct: 10  SAPSEDGDRARLLALRDEIERHNFRYYVLDDPEISDAAFDRLMRELQQIESAHPEWI--- 66

Query: 70  DPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            P+ P  ++G          VTH    LSL+ ++++E+   F  RI    ++  D  + F
Sbjct: 67  TPDSPTQRVGSPTFTTRFAPVTHHQAMLSLDNVFSVEEWDAFTQRIQDRLKR--DAPLVF 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP--EIIE 186
             EPK DG  I + Y +G+ V AA RGDG +GEDV+  +R I  IP+ L  ++   +++E
Sbjct: 125 AAEPKFDGLAINLIYRQGQLVQAATRGDGQTGEDVTLNVRTIAAIPQQLPDSLLSCDLLE 184

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGE+ +S   F ALN    A G K + NPRNAA+G LR+ +P     R L FF +G+G 
Sbjct: 185 VRGEIVMSHKAFAALNAAADARGDKRFVNPRNAAAGSLRQKDPRITAKRQLQFFAYGVGA 244

Query: 246 TSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                    Q  +L  +  LGF V+   R+      +++Y  EM + RS L YDIDG+V+
Sbjct: 245 VDGADLPDSQLGLLDWLADLGFTVSEWRRRCEGRDEVLAYQQEMSARRSQLDYDIDGVVF 304

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K++  S Q  LG  A++PRW I+ KF  ++A++R+  +D Q+GRTG LTPVAR++PV +G
Sbjct: 305 KINAQSEQDALGFVAKAPRWAIAFKFPAEEATSRVHAVDFQVGRTGALTPVARIDPVFVG 364

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++N TLHN D I             +DIR+GD V+V+RAG+VIP+VV ++   R  D
Sbjct: 365 GVTVSNITLHNIDEITR-----------KDIRIGDTVVVRRAGDVIPEVVRVLPELRPAD 413

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+  + P+ CP+C S VVR          A  RC+GGL C AQ+ E +KHF SR A NI+
Sbjct: 414 ARLVALPATCPVCGSEVVRAEGE------AIARCSGGLFCPAQRREAIKHFASRKAMNID 467

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++ ++   + +     +    D+F L   Q  +      +   G+ S  NL D+++ 
Sbjct: 468 GLGEKWIELLLEHK----LVEHVDDLFHLTVPQVLT------LPRMGEKSAQNLVDALSA 517

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +L RF+++LGIR VG   A  LA ++ +                     L  VP V
Sbjct: 518 AKQTTLPRFLYALGIREVGEVTAAGLAAHFRNLDALNAAT----------LEDLQAVPDV 567

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQR 663
           G ++AQ +  F + P N   +  L+            + ++  +  +  V TGTL  + R
Sbjct: 568 GPVVAQHVFTFLRQPHNQEVIRNLIDAGVHWPAIVATDANALPLAGRTYVLTGTLVGMSR 627

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +A E +  LGA VS  +S KT  +I G   GSKL KA  LGV +++E     LL
Sbjct: 628 EEAGERLKALGAKVSGSVSSKTTAVIAGSEAGSKLTKANDLGVPVLDETDLQKLL 682


>gi|313679715|ref|YP_004057454.1| DNA ligase, nad-dependent [Oceanithermus profundus DSM 14977]
 gi|313152430|gb|ADR36281.1| DNA ligase, NAD-dependent [Oceanithermus profundus DSM 14977]
          Length = 670

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 219/716 (30%), Positives = 363/716 (50%), Gaps = 50/716 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+A + ++ L   I  H+  YY   +P I D+EYDAL R    +  AFP+L     P
Sbjct: 1   MTREEAARRVAELTWAIRRHNHLYYVLDRPEISDAEYDALVRELAELEAAFPEL---RSP 57

Query: 72  NGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             P N++G  +   S   VTH  P  SL+  +  +++  F  R+ R    +    + + L
Sbjct: 58  ASPTNQVGAGVLGASFEPVTHPTPLYSLDNAFGPDEIAAFEERVARALGTE--PPLEYAL 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  I + YE G+ V+ A RG+G  GE+V+  +  +  +P  L    P  +EVRGE
Sbjct: 116 EYKIDGLSINLLYEGGRLVWGATRGNGRVGEEVTQNLLTVRDVPSRLEGAPP-RLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS-E 248
           VY+ +  FL LN      G  P+ NPRNAA+G +R+ +P     R L  + +G+G+ + E
Sbjct: 175 VYMPREVFLELNRAREEAGELPFKNPRNAAAGAVRQKDPRIAAERRLAAYFYGVGEGAAE 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + A+ Q E+L ++  LG PV    R A    G+   Y +M + R  LP++ DG   KV++
Sbjct: 235 LRARTQLELLDRLEALGLPVEPHRRSAVGAAGVEEAYRQMLARRDALPFEADGATVKVND 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              Q++LG  A+SPRW +++KF  ++  TR+ ++  Q+GRTG +TPVA L PV + G  +
Sbjct: 295 LEAQRRLGHTAKSPRWAVAYKFPAEEKETRIEEVVFQVGRTGRITPVAHLTPVQLDGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  TLHN+ +I+ L           D RVGD V + ++G +IP+++ +I  +R    +P 
Sbjct: 355 SRVTLHNKAFIEEL-----------DARVGDAVRLHKSGGIIPEILRVIKEKRTGKEEPI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP C + +         +    HRC   L C A+  ++L+H+ SR A +++GLG+
Sbjct: 404 VFPYHCPECGANL--------VEDGKIHRCPNPL-CPAKAFQQLRHWASRRAMDVQGLGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   +       ++  AD++ L +           +   G+ S  NL   + + +  
Sbjct: 455 KLIEQLLEK----GLVKDAADLYRLGKEDLAG------LERMGEKSAENLLVQLEESKGR 504

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            LER ++ LGI  VG  +AR+LA+ + + +   +               L  VP VG + 
Sbjct: 505 GLERALYGLGIPQVGEALARTLARRFGTIEKLMEAGE----------EELEAVPDVGPVT 554

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A  I     + R    +  L +       +  +     +    +V TG L +  R + +E
Sbjct: 555 AAEIRRALADERMRSLIRRLKEAGVSFEAKQAQPAEQPLAGLTIVLTGELSR-PRSEVKE 613

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            +  LGA V+  +SRKT  ++ G   GSKL+KA++LGV +++E     LL +    
Sbjct: 614 ELEALGAKVAGSVSRKTSYVVAGPGAGSKLKKARELGVPVLDEAGLAALLAERGAA 669


>gi|170079241|ref|YP_001735879.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7002]
 gi|254781436|sp|B1XLV0|DNLJ_SYNP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169886910|gb|ACB00624.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7002]
          Length = 678

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 227/699 (32%), Positives = 355/699 (50%), Gaps = 53/699 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            L+ L  ++      YY    P + D+ YD L R   A+  A P L     P+ P  +IG
Sbjct: 8   RLAQLRSQLQKAAYAYYVLDAPFMEDAVYDQLYRELVALETAHPQLI---TPDSPTQRIG 64

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +       V H+IP  SLE  ++  +L ++  R  R    +  +   +  E KIDG+ I
Sbjct: 65  DQPATQFTSVKHNIPLYSLENAFDFGELTQWEQRWQRALAGEIPSDSGYVCELKIDGSAI 124

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDF 198
            + YE G  V  A RGDG +GE+++  +R I TIP  L+  N P ++EVRGE ++    F
Sbjct: 125 ALTYENGILVRGATRGDGVTGEEITQNLRTIRTIPLRLNLDNPPPLVEVRGEAFLPLETF 184

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKG---Q 254
             +N E    G   +ANPRNAA+G LR+L+      R L+FF + L       +     Q
Sbjct: 185 EKINQEREKAGENLFANPRNAAAGTLRQLDSRIVAARKLDFFAYTLHLPESHNSPQLNSQ 244

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E L+ ++ +GF VN           + +Y+ +    R  LPY  DG+V K+++FSLQ +
Sbjct: 245 WEALEFLKKMGFRVNPNRELCPNLTAVKNYFEKWDEGRKKLPYLTDGVVVKLNDFSLQAE 304

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   + PRW I+ K+A ++A T + DI + +GRTG +TP+A +EPV + G  +  ATLH
Sbjct: 305 LGFTQKFPRWAIALKYAAEEAPTTVKDIIVNVGRTGAVTPMAVMEPVQLAGTTVQRATLH 364

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED IK L           D+R+GD V++++AGE+IP+V+ ++V+ R     P+ FPS C
Sbjct: 365 NEDRIKEL-----------DLRIGDTVVIRKAGEIIPEVLRVLVDLRPEATIPYEFPSHC 413

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S +VR          A  RC    +C A     L H+  RDA +I+GLG++ +   
Sbjct: 414 PECNSALVRPPGE------AVARCVNS-SCPAILRGSLVHWAGRDALDIQGLGEKNVILL 466

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +       ++  ADI+ L   Q  S      +   G  S  NL  +I   +N    R +
Sbjct: 467 IEH----GLVQSIADIYDLTSEQLQS------LPRMGQKSAANLIQAIAHSKNQDYARVL 516

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           + LGIR VG   A  LA+ + + +   +            +  L  V  +G+ IAQ++V+
Sbjct: 517 YGLGIRFVGKVNAEILAQNFPTLEQLQKA----------SFAQLQGVYGIGEEIAQSVVD 566

Query: 615 FYQNPRNICAVEALLKEV-------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +++   N   +E L +         +      +   + +I  K  V TGTL  ++R +A 
Sbjct: 567 WFRVDANQQLIEKLQQAGLTFAQTQTAQTQTAQTQANHQISGKTFVITGTLPTLKRTEAA 626

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           E +   G  V++ +S+ TD ++ GDN GSKL+KA+QLG+
Sbjct: 627 EKIKAAGGKVTSSVSKNTDYLVAGDNAGSKLDKARQLGI 665


>gi|282856148|ref|ZP_06265431.1| DNA ligase (NAD(+)) [Pyramidobacter piscolens W5455]
 gi|282585907|gb|EFB91192.1| DNA ligase (NAD(+)) [Pyramidobacter piscolens W5455]
          Length = 681

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 229/706 (32%), Positives = 352/706 (49%), Gaps = 46/706 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +       L  E++ H   YY    P I D EYDAL R         PDL R    + P 
Sbjct: 7   EKLDRYYWLVDELNRHGRLYYVLDAPEIEDDEYDALMREMLQFEREHPDLIRD---DSPS 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +  +  KVTH+ P LSLE +++  +L  ++ R      +     I +  E KID
Sbjct: 64  KRVGGAVLDAFEKVTHAKPMLSLEDVFSKNELHDWLQRAAEGVGQPW---IPWCCELKID 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++ +E GKFV A+ RGDG  GEDV+  ++ +  +P  L  ++P  +E+RGEVY+ K
Sbjct: 121 GLAVSLIFEDGKFVQASTRGDGVVGEDVTENLKTVKDLPLRLLGDVPGHLELRGEVYMGK 180

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254
           + F  LN      G   +ANPRNAA+G LR+L+ +    R L  F + +          Q
Sbjct: 181 DGFAQLNAAREEAGLPLFANPRNAAAGSLRQLDTSVAAKRNLRLFTYYVQDAESYGLHSQ 240

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E+L+ ++  G PV    R+A T    + +       R +LPY  DG V+K D       
Sbjct: 241 SEILEWLKARGLPVQKAWRRAETETEALDFLERWSGERFSLPYATDGAVFKADATEYWTV 300

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   ++PRW +++K+  ++  T+L  I+I +GRTG+LTPVA LEPV + G ++  A+LH
Sbjct: 301 LGNNVKTPRWAVAYKYPPEERKTKLESIEISLGRTGVLTPVANLEPVLLSGTVVKRASLH 360

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N++ I+            +DIRVGDRV V++AGE+IP++V + V  R    +PF+ P+ C
Sbjct: 361 NDEEIQR-----------KDIRVGDRVWVRKAGEIIPEIVRVDVASRTGTEEPFAMPATC 409

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C + V +       +           +C AQ  + L HF SR   NI+GLG +  +  
Sbjct: 410 PVCGAAVAKLPGEVALR-------CLNRSCPAQLTQGLIHFASRQGMNIQGLGDRLAEQL 462

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +S      ++  +D++ L+         +  +   G+ S   L  +I K +   L+  I
Sbjct: 463 VRS----GLVKNFSDLYALRVE------PLVRLDRMGEKSAGKLLQAIAKSKERPLKFLI 512

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGIR VGA +A  LAK + S    A            D   L  V  VG +IA +I  
Sbjct: 513 TALGIREVGAGVAAELAKRFSSLDEIAAA----------DEERLAAVEGVGPVIAGSIKT 562

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+    N   ++ L +                 +  K  VFTG L ++ R +AQE VTQ 
Sbjct: 563 FFGEEHNRRLIDGLREAGVSMRSETAPEAPIGPLAGKTFVFTGELSRMSRAQAQELVTQR 622

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G      +S+KT  ++VG+ PG K EKA +L V  +NEE+F  ++ 
Sbjct: 623 GGKSVNSVSKKTSYVVVGEAPGGKAEKALRLNVPTLNEEEFFAMID 668


>gi|300779557|ref|ZP_07089415.1| NAD-dependent DNA ligase LigA [Chryseobacterium gleum ATCC 35910]
 gi|300505067|gb|EFK36207.1| NAD-dependent DNA ligase LigA [Chryseobacterium gleum ATCC 35910]
          Length = 667

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 216/712 (30%), Positives = 361/712 (50%), Gaps = 48/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S E  ++++  L +E+  H++ YYQ   P I D E+D L +    +   +P+     D 
Sbjct: 1   MS-ENIQQKIEQLRKELHQHNENYYQLDTPTITDFEFDMLLQELQDLEARYPEF---YDE 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG +      + H     SL+  ++ +DL  +  RI +      D+ + F  E
Sbjct: 57  NSPTVRVGGGVTKVFPTIQHKFRMYSLDNSYDFDDLEDWEKRIIKTI----DDPVEFVAE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I+I YE GK   A  RGDG  G++++  +R I  IP  L  + P    +RGE+
Sbjct: 113 LKYDGASISILYENGKLSQAVTRGDGFQGDEITPNVRTISDIPLTLKGDFPAQFFMRGEI 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           Y+++ +F  +N      G  P+ NPRN ASG L+  +  ++ +     V     + E+ A
Sbjct: 173 YLTRKNFDKINKLREEEGLDPFMNPRNTASGSLKMQDSAEVRKRGLSSVLYQFISDEVPA 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           +  +E+LQK +  GF  +   +   T   +  +     + R  LP++IDG+V KV+    
Sbjct: 233 ESHWELLQKAQSWGFKTSQQAKLCKTMAEVQEFITFWDTERHNLPFEIDGIVLKVNSLQQ 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG  A+SPRW +++KF  ++  T L  +  Q+GRTG +TPVA L+PV + G ++  A
Sbjct: 293 QRQLGYTAKSPRWAMAYKFKAEKVETELQSVSYQVGRTGAITPVANLKPVLLAGTIVKRA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHNED IK L           D+   D V V++ GE+IPK+V +   +R  +++   + 
Sbjct: 353 SLHNEDIIKKL-----------DLHEHDFVYVEKGGEIIPKIVGVNTGKRTEESKEIEYI 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +V+  +       A H C   L C  Q + R+ H+VSR A NI+ LG + +
Sbjct: 402 KHCPECGTELVKIED------QAIHFCPNELHCPPQVVGRMIHYVSRKALNIDNLGSETI 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  ++       I  PAD + L + Q      +  +    + S  N+   I K + +  E
Sbjct: 456 EQLYRER----LIENPADFYVLTKEQ------LLPLERMAEKSAQNIITGIEKSKEVPFE 505

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + ++ +GI+HVG  +A+ L K + + +                   L +V  +G  IA +
Sbjct: 506 KVLYGIGIKHVGETVAKKLVKNFPTIEELKNAT----------IEELCQVEDIGTKIAVS 555

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEY 669
           IV+F+QNP N+  +E L             N   S+ +E K  +FTG L    R  A+E 
Sbjct: 556 IVDFFQNPENVLMIERLKSYGVQLEKGESTNEVLSNVLEGKTFLFTGKLSLFTRESAEEM 615

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720
           V + G    + +S+  + +IVG+  GSKL+KAQ +G + I++E+QFL L+++
Sbjct: 616 VEKHGGKNISAVSKNLNYLIVGEKAGSKLKKAQDIGTITILDEQQFLDLIEK 667


>gi|120403104|ref|YP_952933.1| NAD-dependent DNA ligase LigA [Mycobacterium vanbaalenii PYR-1]
 gi|166216216|sp|A1T6X7|DNLJ_MYCVP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119955922|gb|ABM12927.1| DNA ligase, NAD-dependent [Mycobacterium vanbaalenii PYR-1]
          Length = 707

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 217/719 (30%), Positives = 346/719 (48%), Gaps = 46/719 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +  +    R++   L  E+  H   YY    PII D+E+DA+ RR +A+  A P+L    
Sbjct: 18  DDATEAGLRRQWQELADEVRDHQFRYYVRDAPIITDAEFDAMLRRLEALEEAHPEL---R 74

Query: 70  DPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            P+ P   +GG           H    LSL+ ++  ++L  +  RI             +
Sbjct: 75  TPDSPTQLVGGAGFATDFTAAEHLERMLSLDNVFTPDELAAWAARIRTEIGADA----QY 130

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEI 184
             E KIDG  +++ Y  G+    A RGDG +GEDV+   R I  +P  L+       P +
Sbjct: 131 LCELKIDGVALSLVYRDGRLERGATRGDGRTGEDVTLNARTIEDVPEKLTGTEEFPLPSV 190

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +EVRGEV+    DF  LN  ++A G+ P+ANPRN+A+G LR+ NP     R L    HGL
Sbjct: 191 LEVRGEVFFRIADFEDLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRRLRMICHGL 250

Query: 244 GKTSE---IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           G   +      +  ++  + ++  G PV+    Q      +          R  + ++ID
Sbjct: 251 GHIEDAAGFPFRTLHDAYRALQAWGLPVSPHTAQVTGLDAVTERIAYWGEHRHDVEHEID 310

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KVDE +LQ++LG  +R+PRW +++K+  ++A T+LLDI + +GRTG +TP A +EP
Sbjct: 311 GVVVKVDEVALQRRLGATSRAPRWAVAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAYMEP 370

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V I G+ +  ATLHN   +K            + + +GD V++++AG+VIP+V+  +V+ 
Sbjct: 371 VKIAGSTVGLATLHNGSEVKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVDL 419

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R    + F  P+ CP C + +         +  A  RC     C AQ  ER+ H   R A
Sbjct: 420 RDGSEREFVMPTHCPECGTELA-----PAKEGDADIRCPNSRTCPAQLRERVFHVAGRGA 474

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           F+IEGLG +      +    A  I    D+FTL       T       G    +   L  
Sbjct: 475 FDIEGLGYEAAIALLQ----ARVITDEGDLFTLTADDLLRTDLFTTKAGELSANGKRLLT 530

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           ++ K +   L R + +L IRHVG   AR+LA  + S                     L  
Sbjct: 531 NLGKAKAQPLWRVLVALSIRHVGPTAARALATEFGSLDAIVAASE----------EELAA 580

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           V  VG  IA A+ +++    +   V+             + ++   ++   +V TG+L  
Sbjct: 581 VEGVGPTIAAAVTDWFTVDWHRTIVDKWRAAGVRMADERDASIERTLDGLSIVVTGSLTG 640

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             R +A+E +   G   +  +S+KT  ++ GD+PGSK +KA +LGV +++E+ F  LL+
Sbjct: 641 YSRDEAKEAIIARGGKAAGSVSKKTAYVVAGDSPGSKYDKAIELGVPVLDEDGFRRLLE 699


>gi|227530245|ref|ZP_03960294.1| DNA ligase (NAD(+)) [Lactobacillus vaginalis ATCC 49540]
 gi|227349834|gb|EEJ40125.1| DNA ligase (NAD(+)) [Lactobacillus vaginalis ATCC 49540]
          Length = 680

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 238/722 (32%), Positives = 387/722 (53%), Gaps = 49/722 (6%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
            Q IP+  L+++QA++E+  L ++I+     YY+   P + D  YD   +R   I   FP
Sbjct: 3   NQSIPVAQLTLDQAKEEIGPLRKQIAQWGKEYYEQDSPTVEDYVYDRQYQRLVQIEQRFP 62

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           +L   + P+ P  ++GGE    L KV H IP LS+  +++IE+L  F  R      +  D
Sbjct: 63  EL---QTPDSPTQQVGGEAESQLTKVRHEIPMLSMGDVFSIEELMDFNHRQQE--NRDVD 117

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
               + LE KIDG  +++ YE GK +  + RG+G+ GEDV+  +R I ++P+ L   +  
Sbjct: 118 VEAEYNLELKIDGLSLSLVYENGKLIQGSTRGNGNIGEDVTENVRTIKSVPQELPEPLS- 176

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E RGE Y+ K  F  LN +    G+  +ANPRNAA+G LR+L+P     R L+ F++ 
Sbjct: 177 -VEFRGECYMPKESFAKLNAQREDDGQPIFANPRNAAAGSLRQLDPKVTAKRDLDTFMYY 235

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           + +  ++    Q E L +MR LGF VN   R  +    I  Y NE  + R  L Y IDG+
Sbjct: 236 VPEYQKLGVTTQAEALDRMRELGFKVNPHNRVVHNRQEIEDYINEYTAKRDQLAYGIDGI 295

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV++   ++ LG   + PRW I++KF  ++  T + DI+  +GRTG +TP A ++PV 
Sbjct: 296 VEKVNDLETEEALGNTVKVPRWEIAYKFPPEEQPTIIRDIEWTVGRTGNVTPTAVMDPVQ 355

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++ A+LHN DY+K            +D+R+GD V + +AG++IP++  + +++R 
Sbjct: 356 LAGTTVSRASLHNPDYLK-----------EKDVRLGDTVYLHKAGDIIPEISKVNLSKRP 404

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D++P+  P+ CP C S +V   +        A RC   + C AQ  E L HF SR+A +
Sbjct: 405 ADSEPYQIPTKCPACDSELVHLDDE------VALRCINPM-CPAQIKEGLAHFASRNAMD 457

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I GLG + ++  +  +     I   A ++ L   Q  +      +  FG+ S TNL  SI
Sbjct: 458 IAGLGPKIIEQLWNKK----LIHDVAGLYALTEDQLLT------LDKFGEKSATNLLTSI 507

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           N  RN S+ER +F LGIRHVGA+ AR +  ++                       +  V 
Sbjct: 508 NNSRNNSVERLLFGLGIRHVGAKAARLIMAHFNDLDQLMGA----------SADEISAVD 557

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQ 659
            +G  I +++  ++ N +    +E L +              + SS+   K++V TG L 
Sbjct: 558 GIGPTIGESVETYFANEQVQSLIEELRQSGLNFTYLGSTTTVDESSDWNGKRVVLTGKLV 617

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ R +A++++   GA V+  +S+KTDI+I G+  GSKL KAQ+LGV + +E++F   ++
Sbjct: 618 EMTRTEAKDWLEVHGAKVTGSVSKKTDIVIAGEKAGSKLTKAQELGVDVWDEQRFSQAMK 677

Query: 720 QY 721
           + 
Sbjct: 678 EE 679


>gi|194016164|ref|ZP_03054779.1| DNA ligase, NAD-dependent [Bacillus pumilus ATCC 7061]
 gi|194012519|gb|EDW22086.1| DNA ligase, NAD-dependent [Bacillus pumilus ATCC 7061]
          Length = 668

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 238/715 (33%), Positives = 392/715 (54%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A++ +  L Q ++ ++  Y+   +P + D+EYDA  R   ++    PDL  +   
Sbjct: 1   MDKEAAKRRIEELHQILNQYNYEYHTLDRPSVPDAEYDARMRELISLEEEHPDLKAA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  +  KV H  P LSL   +N +DL  F  R+ +       + I + +E
Sbjct: 58  DSPSQRVGGAVLDAFQKVRHGTPMLSLGNAFNEQDLLDFDRRVRQAVG----DDIAYNVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I +IP  L +  P  IEVRGE 
Sbjct: 114 LKIDGLAVSLRYENGLFVRGATRGDGTTGEDITENLKTIRSIP--LKIKRPLSIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           ++ K  F ALN++ +    +P+ANPRNAA+G LR+L+      R L+ FV+ + +  EI 
Sbjct: 172 FMPKPSFEALNEKRLQNEEEPFANPRNAAAGSLRQLDTKIAAKRNLDIFVYSIAELDEIG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q E L  +  LGF  N   R   T   ++     +K+ R+   Y+IDG+V KVD  +
Sbjct: 232 VESQSEGLDLLDELGFKTNKERRMCQTIEEVIELIETLKTKRADFSYEIDGIVIKVDSLA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW +++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 QQEELGFTAKSPRWAVAYKFPAEEVVTKLLDIELSVGRTGVITPTAILEPVKVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED IK            +DIR+ D+V+VK+AG++IP+VV +++++R  + +PF  
Sbjct: 352 ASLHNEDLIK-----------EKDIRLFDQVIVKKAGDIIPEVVGVLIDQRTGEEKPFHM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTECPECHSELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+ +     +   +D++ L + +         +   G+ SV NL  SI + +  SL
Sbjct: 454 ITQLFQEQ----LVSRVSDLYRLTKEELI------QLERMGEKSVDNLLRSIEQSKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA ++       Q               L+ V  +G+ +A 
Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFGDIDQLKQATK----------DQLLEVDEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPS-----IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+V +++    +  +  L +               +   S    K +V TG L+++ R+ 
Sbjct: 554 AVVTYFEKEEILNLLNELKELGVNMTYTGPKPVKVEESDSYFAGKTIVLTGKLEEMARND 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+KTD++I G+  GSKL KA++L ++I +E + L  L++
Sbjct: 614 AKTAIEALGGKLAGSVSKKTDLVIAGEAAGSKLTKAEELNIEIWDEAKMLEELKK 668


>gi|295397184|ref|ZP_06807287.1| NAD-dependent DNA ligase LigA [Aerococcus viridans ATCC 11563]
 gi|294974573|gb|EFG50297.1| NAD-dependent DNA ligase LigA [Aerococcus viridans ATCC 11563]
          Length = 670

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 236/717 (32%), Positives = 389/717 (54%), Gaps = 57/717 (7%)

Query: 12  LSIEQAR----KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           ++ +  +      + +L + ++ +   YY    P I D+EYD L R    +   +P   +
Sbjct: 1   MTKDDQQSTDVARIEALTRLLNDYAYQYYALDNPTISDTEYDKLYRELQDLEAKYPTFIQ 60

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           +E    P  ++G  ++ +  KVTHS P +SL   +N +++ KF+  + +      +  + 
Sbjct: 61  AE---SPTQRVGDVVSEAFTKVTHSQPMMSLGNAFNFDEVAKFVEDVKKNV----NGQVR 113

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           F  E KIDG  + I+YE G++V AA RGDG  GED++  +R I ++P  L  +I   IEV
Sbjct: 114 FVCELKIDGLSVAIQYENGRYVRAATRGDGVVGEDITNNVRTIKSVPMKLRQDI--DIEV 171

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE+Y+ K+ FLALN++    G   +ANPRN+A+G +R+L+     +R LN F++    +
Sbjct: 172 RGEIYMPKDAFLALNEKREEAGLPTFANPRNSAAGSIRQLDSKVTASRNLNIFLYSGVFS 231

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            E+  K Q ++ Q     GF VN   R   TF  I +Y  EM + R  L Y IDG+V KV
Sbjct: 232 DELPIKSQQDLFQHFPDYGFRVNPLTRVCETFEEIQAYIEEMTAKRHELSYGIDGIVIKV 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+FS Q+ LG   ++P+W I++KF  ++  T + DI+  +GRTG++TP A +EPV + G+
Sbjct: 292 DDFSDQETLGYTVKAPKWAIAYKFQAEEVETTIHDIEWTVGRTGVVTPTAIMEPVLLDGS 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  A+LHN D I+            +DIR+ D V++ +AG++IP+VV +++++R  D+ 
Sbjct: 352 TVQRASLHNMDLIE-----------AKDIRLNDTVVIHKAGDIIPEVVTVVLDKRPEDST 400

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+  P+ CP+C S +V   +        A RC    AC AQ  E+L HFVSR+A NI G+
Sbjct: 401 PYPKPTTCPVCHSDLVHLEDE------VALRCVNP-ACPAQAKEKLYHFVSRNAMNITGV 453

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G   L+  +   +    +  PAD++ +++ Q  +      +   GD +   +  +I   +
Sbjct: 454 GPSVLEQMYDKAN----VHSPADLYQVKKDQLMA------LDKIGDKASDKIIQAIEDSK 503

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             SLER +F LGIRHVGA+ AR +A+ Y S Q               +   L  +  +G+
Sbjct: 504 ENSLERLLFGLGIRHVGAKAARQIAEVYPSMQEIM----------TKERTDLTNIEGIGE 553

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS-----IGRHEKNVSSEIENKKLVFTGTLQKI 661
            IA +IV F+        ++AL++          +    + + S    K +V TG L + 
Sbjct: 554 TIADSIVAFFATDGVRETIDALVENGVNMQYKGPVKAEVEAIDSFWSGKTVVLTGKLSQY 613

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R +A++ +  LG  V+  +S+KTDI++ G++ GSKL KA+ LGV + +E+  +  L
Sbjct: 614 TRPEAKKAIEALGGNVTGSVSKKTDILVAGEDAGSKLAKAENLGVTVFSEQDMVDKL 670


>gi|134102614|ref|YP_001108275.1| NAD-dependent DNA ligase LigA [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004701|ref|ZP_06562674.1| NAD-dependent DNA ligase LigA [Saccharopolyspora erythraea NRRL
           2338]
 gi|166216238|sp|A4FMS5|DNLJ_SACEN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|133915237|emb|CAM05350.1| DNA ligase, NAD-dependent [Saccharopolyspora erythraea NRRL 2338]
          Length = 727

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 215/709 (30%), Positives = 349/709 (49%), Gaps = 42/709 (5%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            R+  + L +++  H   YY    P I D E+D L      +    P L    DP+ P  
Sbjct: 43  VRERYADLVEQVRAHQFRYYVLDSPTISDGEFDELFTELQTLESDHPAL---RDPDSPTQ 99

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
            +GG  +     V H    LSL+  ++ ++LR ++ R+ R           +  E KIDG
Sbjct: 100 VVGGTFSTDFTAVDHLERMLSLDNAFDPDELRAWVERVEREVGSSAH----YLCELKIDG 155

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEVY 192
             I + Y  GK   A  RGDG +GEDV+  +R +  +P  L+       P ++E+RGEV+
Sbjct: 156 LAINLLYRDGKLERALTRGDGRTGEDVTLNVRTMDDVPDQLTGTDEYPVPALVEIRGEVF 215

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
              ++F  LN  ++  G+ P+ANPRN+A+G LR+ +P    +R L    HGLGK      
Sbjct: 216 FRVDEFAQLNASLVEAGKPPFANPRNSAAGSLRQKDPRVTKSRPLRMICHGLGKREGFEP 275

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K Q E    +R  G  V+   +  +T   ++ + +     R++  ++IDG+V KVDE SL
Sbjct: 276 KQQSESYAALRAWGLRVSPHTKVLSTVDEVLEHIDYWGKHRNSAEHEIDGVVVKVDEVSL 335

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  +QA+TRLLDI + +GRTG +TP A +EPV + G+ +  A
Sbjct: 336 QRRLGATSRAPRWSIAYKYPPEQATTRLLDIQVAVGRTGRVTPYAVMEPVKVAGSTVARA 395

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D ++            + + +GDRV++++AG+VIP+V+  +V+ R    + F  P
Sbjct: 396 TLHNADQVR-----------HKGVLIGDRVVIRKAGDVIPEVLGPVVDVRDGSEREFVMP 444

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +         +     RC     C  Q+ ERL     R AF+IE LG + +
Sbjct: 445 TECPDCGTALAHQ-----KEGDVDLRCPNSHNCIGQRRERLFQLAGRKAFDIEVLGYEGV 499

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                    A  +    D+F L       TT      G   V+   L  ++   +   L 
Sbjct: 500 SALLS----AGVVFDEGDLFDLNEEALLKTTLFRTDDGSLSVNGGKLLANLESAKQQPLW 555

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R + +L IRHVG   AR LA+ + S     +               L     VG  IA A
Sbjct: 556 RVLVALSIRHVGPIAARVLAREFGSLDRIQEASE----------EELAAGEGVGPTIATA 605

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           + E++    +   V    +         ++++   +    +V TG+L+   R +A+E + 
Sbjct: 606 VREWFDVDWHREIVRKWSEAGVRMADERDESIERHLTGLSIVVTGSLEGFSRDEAKELIM 665

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             G   +  +S+KT  ++VG++PGSK +KA Q+ V +++E+ F  LL+Q
Sbjct: 666 ARGGRAAGSVSKKTAFVVVGESPGSKYDKAVQMKVPVLDEDGFRVLLEQ 714


>gi|118465270|ref|YP_883031.1| NAD-dependent DNA ligase LigA [Mycobacterium avium 104]
 gi|166215821|sp|A0QJE3|DNLJ_MYCA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118166557|gb|ABK67454.1| DNA ligase, NAD-dependent [Mycobacterium avium 104]
          Length = 693

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 218/711 (30%), Positives = 344/711 (48%), Gaps = 43/711 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R++   L + +  H   YY    PII D+E+DAL     A+    P+L  +   + P 
Sbjct: 12  EVRRQWQELAETVREHQFRYYIKDAPIISDAEFDALFNELLALEERHPELRVA---DSPT 68

Query: 76  NKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             +GG        +  H    LSL+ +++ ++L  +  R+     K       +  E KI
Sbjct: 69  QLVGGAGFATDFAEAAHLERMLSLDDVFDTDELIAWSNRVENEIGKDPH----YLCELKI 124

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGE 190
           DG  +++ Y  G+   AA RGDG  GEDV+   R I  +P  L       +P ++EVRGE
Sbjct: 125 DGVALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLSPSDDFPVPALLEVRGE 184

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V+    DF ALN  ++  G+ P+ANPRN+A+G LR+ NP     R L    HG+G+T   
Sbjct: 185 VFFLLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGRTEGF 244

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             K Q+E    +   G PV     +      +          R  L ++IDG+V KVD+ 
Sbjct: 245 SPKTQHEAYTALSVWGLPVAEQTARVRGLAAVQERIGYWGEHRYELQHEIDGVVVKVDDV 304

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  +R+PRW +++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ + 
Sbjct: 305 ALQRRLGATSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVG 364

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   +K            + + +GD V++++AG+VIP+V+  +V+ R    + F 
Sbjct: 365 LATLHNAAEVKR-----------KGVLIGDTVMIRKAGDVIPEVLGPVVDLRDGTEREFV 413

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +         +  A  RC    +C AQ  ER+ H   R A +IEGLG +
Sbjct: 414 MPTTCPECGTPLA-----PAKEGDADIRCPNARSCPAQLRERVFHVAGRGALDIEGLGYE 468

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                 K    A  I    D+F L       T       G    + T L  ++ K + ++
Sbjct: 469 AATALLK----AGVIADEGDLFALTEDDLLRTELFRTKAGTLSANGTRLLQNLQKAKKVA 524

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L IRHVG   AR+LA  +    +                  L  V  VG  IA
Sbjct: 525 LWRVLVALSIRHVGPTAARALATEFGDLDSIMSA----------STERLAAVEGVGPTIA 574

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            A+ E++    +   V+             + +V   +E   +V TG+L    R  A+E 
Sbjct: 575 AALTEWFTVDWHRAIVDKWRGAGVRMADERDASVPRTLEGLTVVVTGSLAGFSRDDAKEA 634

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +   G   +  +S+KTD ++ GD+PGSK +KA +LGV I++E+ F  LL +
Sbjct: 635 ILARGGKAAGSVSKKTDYVVAGDSPGSKYDKAVELGVPILDEDGFRKLLAE 685


>gi|148544657|ref|YP_001272027.1| DNA ligase, NAD-dependent [Lactobacillus reuteri DSM 20016]
 gi|184154010|ref|YP_001842351.1| NAD-dependent DNA ligase [Lactobacillus reuteri JCM 1112]
 gi|227363780|ref|ZP_03847887.1| DNA ligase, NAD-dependent [Lactobacillus reuteri MM2-3]
 gi|325682991|ref|ZP_08162507.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri MM4-1A]
 gi|209572830|sp|A5VLG6|DNLJ_LACRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781354|sp|B2G8T9|DNLJ_LACRJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148531691|gb|ABQ83690.1| DNA ligase, NAD-dependent [Lactobacillus reuteri DSM 20016]
 gi|183225354|dbj|BAG25871.1| NAD-dependent DNA ligase [Lactobacillus reuteri JCM 1112]
 gi|227071137|gb|EEI09453.1| DNA ligase, NAD-dependent [Lactobacillus reuteri MM2-3]
 gi|324977341|gb|EGC14292.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri MM4-1A]
          Length = 680

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 240/725 (33%), Positives = 384/725 (52%), Gaps = 50/725 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M ++Q  P++ L++++A+ E+  L  +++     YY+   P + D  YD   +R   +  
Sbjct: 1   MSEKQ-TPVKELTLQEAQDEIKPLRAKLTKWGKEYYEQDNPTVEDHVYDRAYQRLVQLEE 59

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP L      + P  ++GG     L KV H IP LS+  +++IE+L  F  R      +
Sbjct: 60  QFPQLV---SADSPTQRVGGATESQLTKVRHEIPMLSMGDVFSIEELMDFNQRQQE--NR 114

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             +    + LE KIDG  +++ YE GK V  + RG+G  GEDV+A +R I ++P  L   
Sbjct: 115 DVEVEPEYNLELKIDGLSLSLVYENGKLVQGSTRGNGTIGEDVTANVRTIKSVPAELPEP 174

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +   IEVRGE Y+ K  F  LN +  A G   +ANPRNAA+G LR+L+P     R L+ F
Sbjct: 175 LS--IEVRGECYMPKAAFAKLNAKREAEGLPVFANPRNAAAGSLRQLDPKVTAQRELDTF 232

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ + +  +I  K Q E L +MR LGF VN   R  +    I  Y  E  + R  L Y I
Sbjct: 233 MYYVPEYQKIGVKTQAEALDRMRELGFNVNPNNRVVHNRDEIEKYIEEYTAQRDKLTYGI 292

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV++   +  LG   + PRW I++KF  ++ +T + DI   +GRTG +TP A ++
Sbjct: 293 DGIVEKVNDLDTEVALGNTVKVPRWEIAYKFPPEEQATIVRDIVWTVGRTGNVTPTAVMD 352

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  ++ A+LHN DY++            +DIR+GD V + +AG++IP++  + + 
Sbjct: 353 PVQLAGTTVSRASLHNPDYLR-----------EKDIRIGDTVYLHKAGDIIPEISKVDLT 401

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  D+  +  P+ CP+C S +V            A RC   + C AQ  E L HF SR+
Sbjct: 402 KRPADSVEYEIPTKCPVCGSELVHLDGE------VALRCINPM-CPAQIKEGLAHFASRN 454

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NI+GLG + ++  +  E     I   A ++ L   Q  +      +  FG+ S  NL 
Sbjct: 455 AMNIDGLGPRIIEQLWDKE----LIHDVAGLYRLNHDQLLT------LDKFGEKSTANLL 504

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            SI+  RN S+ER +F LGIRHVGA+ AR + +++    +  +           D   + 
Sbjct: 505 TSIDNSRNNSVERLLFGLGIRHVGAKAARIIMEHFGDLDSLMKA----------DADEIS 554

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTG 656
            +  +G  I ++IV ++ N + +  ++ L +          R   N  SE   +++V TG
Sbjct: 555 AISGIGPTIGESIVTYFANQQVVKLIDELREVGVNFAYLGSRSNANPDSEWNGRRVVLTG 614

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L ++ R +A+ ++   GA V+  +S+KTDI+I G + GSKL KAQ LG+ + NE+QF  
Sbjct: 615 KLTEMTRGEAKSWLENHGAKVTESVSKKTDIVIAGADAGSKLTKAQNLGIDVWNEQQFSQ 674

Query: 717 LLQQY 721
            +++ 
Sbjct: 675 AMKEE 679


>gi|332880187|ref|ZP_08447868.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681836|gb|EGJ54752.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 670

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 215/709 (30%), Positives = 351/709 (49%), Gaps = 48/709 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++++  L  E+  H+  YY  + P I D E+D + R    +  A P+    +DP+ P 
Sbjct: 4   EVKEQIERLRNELHRHNYNYYVLNAPEISDQEFDRMMRELQDLEAAHPEF---DDPDSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N    +V H  P LSL   +N +++  F  R+       +        E K D
Sbjct: 61  RRVGSDLNQEFVQVPHRYPMLSLSNTYNKQEVADFYERVRSGL---EGEPFEICCEMKYD 117

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194
           G  I++ YE+G+ V A  RGDG  G+DV+  ++ I  IP  L+ N  PE  E+RGE+ + 
Sbjct: 118 GLSISLTYEQGRLVRAVTRGDGVQGDDVTENVKTIRCIPLRLNGNGYPEEFEIRGEILMP 177

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
              F  LN E        +ANPRNAASG L+  N   + +              I   G 
Sbjct: 178 WTSFETLNREREEREEPLFANPRNAASGTLKSKNSAVVAQRKLDAYLYYLLGEHIPFDGH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ  R  GF ++ G+++  T   I  + +     R  LP   DG+V KV+    Q+ 
Sbjct: 238 YENLQAARSWGFKISGGMKKVTTLQDIYDFIDYWDVERKNLPVATDGIVLKVNSQRQQRA 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA ++PV + G ++  ATLH
Sbjct: 298 LGYTAKSPRWAIAYKFQAERARTRLNAVTFQVGRTGTVTPVANMDPVQLAGTVVRRATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QPFSFPSF 433
           N D ++ L           D+ +GD V V++ GE+IPK+V +  + R P+      F + 
Sbjct: 358 NADVMEQL-----------DLHIGDMVYVEKGGEIIPKIVGVDADARGPETGPRAEFITR 406

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + +VR          AA  C    AC  Q   R++H++SR A NI+ LG + +D 
Sbjct: 407 CPECGAELVRYEGE------AAWYCPNDTACPPQIKGRIEHYISRRAMNIDSLGPETVDD 460

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           +++       IR  AD++ +Q +Q           G  + S   +  SI     +  ER 
Sbjct: 461 YYRR----GLIRDVADLYDIQVQQING------EDGTREKSAQKIVRSIADSVEVPFERV 510

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGIR VG   A++LA+++ S    A                ++++  +G +IA++++
Sbjct: 511 VFALGIRFVGEIAAKALARHFKSMDALASA----------SLEDMLQINGIGVVIAESVI 560

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVT 671
            ++ N  N   V  L ++        E+  S   ++  + +V +G      R + +  + 
Sbjct: 561 RYFANEANRDLVRRLREKGVRMELSDEELSSHSDKLSGQSIVVSGVFSLHSRDEYKAMIE 620

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           Q G      +S KT  ++ G N G +KLEKA +LG+ I++EE+FL  ++
Sbjct: 621 QHGGKNVGSISSKTSFVLAGANMGPAKLEKAGKLGIPILSEEEFLKKIE 669


>gi|294793797|ref|ZP_06758934.1| DNA ligase, NAD-dependent [Veillonella sp. 3_1_44]
 gi|294455367|gb|EFG23739.1| DNA ligase, NAD-dependent [Veillonella sp. 3_1_44]
          Length = 667

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 233/704 (33%), Positives = 369/704 (52%), Gaps = 46/704 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L+QE+++    YY    P + D EYD   R    +  A P+   S   + P  +
Sbjct: 4   KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIVS---SSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++  S  KV H  P LSL  +++ +++R F +R+ +           + +E KIDG 
Sbjct: 61  VGMKVEGSFEKVVHGRPMLSLSNVFSADEVRAFASRVEKELG---HKPSAYVVELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  N PE IEVRGE Y+  ++
Sbjct: 118 AVNLHYENGMFVRAVTRGDGRIGEDVTANVRTIKSIPLYL-ENAPEFIEVRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P    +R L FF + +G         Q E
Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEVGANIHSQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +LQ +    F VN   R   T   ++   N     R  LPYD DG+V KV+ F  Q+ LG
Sbjct: 237 LLQSLETFKFSVNPHYRVCKTIDEVIDAINYWGEKRHELPYDTDGMVIKVNSFDDQEVLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T L DI I +GRTG+LTP   LE V + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETVLKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD V++ +A E+IP+V+ ++  +R+    PF+ P+ CP+
Sbjct: 357 DFI-----------NEKDIRIGDHVIIHKAAEIIPEVIRVVPEKRNGSEIPFTIPNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR          AA RCT    C A + E++ HFVSRDA NI+GLG   ++    
Sbjct: 406 CESPAVRREGE------AAVRCTNK-HCPAIEKEQIIHFVSRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     I    D++ L   Q  +          G  S  NL  +I   +   L+R ++ 
Sbjct: 459 NK----LITNVVDLYHLTVDQLVTM------DRMGKKSAENLVKAIADSKTRGLDRVLYG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A    S + F                 L+ V  +G  +A +IVE+ 
Sbjct: 509 LGIRLIGSKAAGTIANVVKSMERFMTITK----------EELVAVEEIGPTMADSIVEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q+P ++  +E L            +   +++E + +V TG L+ + R +A + +   GA 
Sbjct: 559 QDPAHVEIIEGLTAAGLKMTVDVVEAAGNQMEGEIVVLTGKLEVMGRSEAGKILEAHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           V+  +S+KT ++I G++ GSKL KA +LG+++MNEE+F+ LL++
Sbjct: 619 VTGSVSKKTTLVIAGEDSGSKLTKANELGIRVMNEEEFVELLRE 662


>gi|198283038|ref|YP_002219359.1| NAD-dependent DNA ligase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666742|ref|YP_002425245.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|254781244|sp|B7J653|DNLJ_ACIF2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781245|sp|B5EP61|DNLJ_ACIF5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|198247559|gb|ACH83152.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518955|gb|ACK79541.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 671

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 243/706 (34%), Positives = 375/706 (53%), Gaps = 46/706 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L  E+   ++ YY+   P + D+EYDA  R    +    P     +  + P  ++
Sbjct: 10  ERIQQLRAELVAANNAYYREDSPTLSDAEYDARLRELRTLEDRNPQW---QSADSPTQRV 66

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G        +V ++IP  SL+ +++ +    ++ R+ +   ++D   +  + EPK DG  
Sbjct: 67  GAAPVEVFGEVHYAIPLTSLDNVFDQDGFSDWLARVQKGLGRED---VPLSAEPKFDGLS 123

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKND 197
           + IRY +GK V A  RGDG +GEDV+A +R I  +P  L+  + PE++EVRGEV I    
Sbjct: 124 VNIRYIEGKLVQAGTRGDGQTGEDVTANVRTIRNVPLQLTGKDWPELLEVRGEVVIPVAA 183

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E +  G  P+ANPRNAA+G LR+L+ +    R L +F  G G++S    K    
Sbjct: 184 FRRLNGERLRAGDNPFANPRNAAAGSLRQLDSSVTAKRPLAYFPWGWGESSVPLGKSHIA 243

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +++++   GF V + +R  +       Y++EM+ IR  +P++IDGLV+KVD+   ++QLG
Sbjct: 244 VMERLSAWGFEVTSYLRGVHELTECQRYFSEMQKIREGMPFEIDGLVFKVDDLLAREQLG 303

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             AR+PRW I++KF   +  T + DI   +GRTG++TPVA L+PV +GG  ++ A+LHN+
Sbjct: 304 FTARAPRWAIAYKFPAHEERTVVEDILASVGRTGVITPVAVLKPVQVGGVTVSRASLHNQ 363

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D +             +DIRVGD VLV+RAG+VIP+VV +I  ER P  QP+  P  CP+
Sbjct: 364 DEVDR-----------KDIRVGDTVLVRRAGDVIPEVVMVIKEERPPATQPWHMPQRCPV 412

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V+R  N       +AHRC GGL C AQ++  ++HF SR A +I GLG++ ++    
Sbjct: 413 CGSEVLRLANE------SAHRCMGGLYCPAQRMGAIRHFASRRAMDIRGLGEKLVEQLVG 466

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +   ADI+ L             +      S   L   I++ R+ SL RF+++
Sbjct: 467 H----GLVHTVADIYHLDEAALCG------LERMASRSAQKLLAEIDRSRHTSLPRFLYA 516

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   A+SLA Y+            +          L  +P VG I+A+++  F+
Sbjct: 517 LGIRQVGEGTAKSLAIYFGDLDPLMAATPEL----------LQNIPDVGPIVAESVAHFF 566

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
             P N   + AL            +      +   LV TG L  + R +A+  +   G  
Sbjct: 567 AQPHNRDVIAALRAAGVQWAVVQPQK-GGRFQGMTLVLTGALDNMTREEAKTAIENAGGK 625

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           VS  +S KT  ++VG +PGSK EKA +LGVK + E QFL +  +  
Sbjct: 626 VSGSVSAKTSYVVVGKDPGSKAEKAAKLGVKQLTEAQFLAMFSEKE 671


>gi|134034096|sp|Q4UN15|DNLJ_RICFE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 689

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 269/695 (38%), Positives = 406/695 (58%), Gaps = 29/695 (4%)

Query: 26  QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85
            +I+ ++  YY    P++ DSEYD L      +   FP L      N P  KIG ++   
Sbjct: 21  DKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLVLE---NSPSKKIGAKITNK 77

Query: 86  LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145
             K+TH IP LSL   ++ +D+R F+ RI  F +  +   I    EPKIDG   +  Y+ 
Sbjct: 78  FAKITHQIPMLSLSNAFDEQDVRDFVDRIKNFLRLDEFAPI--FCEPKIDGLSFSAIYKN 135

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
           G     A RGDG+ GED++A I+ I   P     N PE +EVRGE+YI K DFL LN E 
Sbjct: 136 GLLTTGATRGDGYVGEDITANIKTIKNFPH-KIDNAPEFLEVRGEIYIEKQDFLNLNKEQ 194

Query: 206 IAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
              GR  +ANPRNAA+G LR+L+ +    R L +FV+  G T +  A  Q ++L K++  
Sbjct: 195 EEQGRDKFANPRNAAAGSLRQLDASITAQRSLKYFVYSGGVTEQNLASSQEQLLIKLKEF 254

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           GF VN   +  N+   I ++Y  +K+ R  LPY+IDG+VYK+++F+LQ ++G  ARSPR+
Sbjct: 255 GFSVNEISKLTNSEEEIFTFYEYLKTNRENLPYEIDGVVYKLNDFALQNRMGFIARSPRF 314

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
             +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  ++ ATLHN   I     
Sbjct: 315 ATAHKFPAIIGRTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSRATLHNFQEIMR--- 371

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                   +D+R+ D V ++RAG+VIPK+  + + +R  D   F  P FCP C S++   
Sbjct: 372 --------KDVRIDDYVFLQRAGDVIPKITGVDIGKRPNDTIAFDTPLFCPSCNSKLHY- 422

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
                       RC  GL C AQ  ER++HFVS++A +IEGLG++Q++F          I
Sbjct: 423 -----APEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLIDK----GLI 473

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
             P DIF L+ +  +S TK+EN+ G+G  SV NL+ +I + +N+SL RFI++LGIRH+G 
Sbjct: 474 SNPLDIFFLKEKNDSSLTKLENMDGWGKKSVENLFKNIEQSKNVSLPRFIYALGIRHIGE 533

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
           + A+ LA+ + SY NF  ++  +  ++ D +  L  +  +GD I   I++F+    N   
Sbjct: 534 QNAKLLAREFGSYANFIAQMELLSKNDLDIYQKLNDLEGIGDKILVDIIDFFDVKENTTL 593

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
           ++ L + ++    +  +  SS +  K +VFTG+L  I R +A+    +LGA V+A +S  
Sbjct: 594 IKKLGEVLNIEDYKETREQSS-LTGKIIVFTGSLPTISRAEAKATAEKLGAKVAASVSSN 652

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           TD+++ G + GSKL+KA++L +KI+ EE++L L++
Sbjct: 653 TDLVVAGVDAGSKLKKAKELNIKIIGEEEWLTLIK 687


>gi|270290149|ref|ZP_06196375.1| DNA ligase, NAD-dependent [Pediococcus acidilactici 7_4]
 gi|270281686|gb|EFA27518.1| DNA ligase, NAD-dependent [Pediococcus acidilactici 7_4]
          Length = 675

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 229/717 (31%), Positives = 379/717 (52%), Gaps = 51/717 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PIE +++ +A +    L +++    + YY    P + D  YD       A+  AFP++A 
Sbjct: 6   PIEKMNLTEANELAEQLREKLDRWSELYYTKDAPEVEDYVYDENYADLQALEQAFPEIA- 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+    ++GGE+     KVTH+ P LS+  +++ E+L +F  RI +       + + 
Sbjct: 65  --SPDSITQRVGGEVLAGFTKVTHTEPMLSMGDVFSKEELAEFDQRIQKNVG----HPVD 118

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  I++ YE GK V  + RGDG+ GED++  ++ I ++P   +L+ P  +EV
Sbjct: 119 YNVELKIDGLAISLVYEDGKLVQGSTRGDGNIGEDITKNLKTIKSVP--QTLSRPLSLEV 176

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE Y+ K  F  LN++  A G+  +ANPRNAA+G LR+LN      R L+ F++ L + 
Sbjct: 177 RGECYMPKAAFAKLNEQQSAAGKSVFANPRNAAAGSLRQLNTQITKARELDTFIYTLVEP 236

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
             +  + Q+E +Q M  LGF  N      ++   +  Y    +  R  LPY IDG+V KV
Sbjct: 237 EVLGVQTQHEAIQAMAELGFNTNPTQTVCHSLDEVWDYIERYEGQRDDLPYGIDGIVLKV 296

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++  LQ +LG   + PRW I++KF  ++ +T + DI+  +GRTG++TP A ++PV + G 
Sbjct: 297 NDLGLQAELGHTVKVPRWEIAYKFPPEEEATVVRDIEWSVGRTGVVTPTAVMDPVQLAGT 356

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ ATL+N D +             +D+R+GD VL+ +AG++IP++  +++++R  D  
Sbjct: 357 TVSRATLNNVDQL-----------TAKDVRIGDTVLLHKAGDIIPEITRVVLDKRPADVA 405

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
             + P+ CP C   +V            A RC     C AQ + RL+HF SR+A NI GL
Sbjct: 406 DLTIPNQCPSCGKELVHLNGE------VALRCINP-DCPAQIVARLEHFGSRNAMNIMGL 458

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q+   +        I    D++ L   Q +       + GF +  V NL ++I++ R
Sbjct: 459 GPKQIQQLYAK----GFIHHFDDLYKLTADQLS------QLDGFKEKRVNNLLEAIDRSR 508

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             SLER +  LGI+ VG ++AR+LA+ + S     +                  V  VG+
Sbjct: 509 QNSLERLVNGLGIQGVGTKMARTLAEAFGSMDRLMEA----------SVEEFDAVDTVGE 558

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQR 663
            +A  +  F+Q+      ++ L            +  +   +    KK+V TG L+   R
Sbjct: 559 TLANNLATFFQSEAARNMIDELKAVDVNMEYLGAQPSEAPENYFNGKKVVLTGKLEHFTR 618

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ +E +  LGA V+  +S+KTD++I G + GSKL KAQ LGV++++E   L  L+Q
Sbjct: 619 NELKEKLLNLGADVAGSVSKKTDVLIAGADAGSKLTKAQDLGVEVIDEATALEKLEQ 675


>gi|189461356|ref|ZP_03010141.1| hypothetical protein BACCOP_02011 [Bacteroides coprocola DSM 17136]
 gi|189431885|gb|EDV00870.1| hypothetical protein BACCOP_02011 [Bacteroides coprocola DSM 17136]
          Length = 667

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 227/707 (32%), Positives = 358/707 (50%), Gaps = 48/707 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L +E+  H+  YY  + P+I D E+D L R    +    P+     DPN P  ++
Sbjct: 5   ERIDQLREELHVHNYNYYVLNAPVISDLEFDKLMRELQDLEALHPEY---YDPNSPSVRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G ++N +  +V H  P LSL   ++  ++ +F  R+ +      +       E K DGT 
Sbjct: 62  GSDLNKNFTQVEHKYPMLSLGNTYSQAEVTEFYERVSKSL----NEEFELCCEMKYDGTS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197
           I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL     P+  E+RGE+ +  N 
Sbjct: 118 ISLTYEDGKLVRAVTRGDGVRGDDVTDNVKTIRSIPLVLHGEGYPKNFEIRGEILMPWNV 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  LN E        +ANPRNAASG L+  N   +                +   G YE 
Sbjct: 178 FEELNRERELREEPLFANPRNAASGTLKSQNSAVVANRKLDAYLYYLLGDNLPHDGHYEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           LQ+    GF +++  R+A T   +  + N     R  LP   DG+V KV+    Q+ LG 
Sbjct: 238 LQEAAKWGFKISHISRKARTLQEVFDFINYWDVERKNLPVATDGIVLKVNSLRQQRNLGY 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++KF  ++A T+L  +  Q+GRTG +TPVA L+PV + G ++  A+LHN D
Sbjct: 298 TAKSPRWAIAYKFQAERALTKLEKVTYQVGRTGAVTPVANLDPVQLSGTVVRRASLHNAD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I  L           D+ +GD V V++ GE+IPK+  + V+ R   ++  +F + CP C
Sbjct: 358 IIASL-----------DLHIGDMVYVEKGGEIIPKITGVEVSARPAGSEKVTFITHCPEC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +VR  +       AA+ CT   AC  Q   +++HF+SR A NIEGLG + +D F++ 
Sbjct: 407 GSELVRYEDE------AAYYCTNETACPPQIKGKIEHFISRRAMNIEGLGPETVDLFYQE 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I   AD++TLQ            +   G+ S  N+   I + + +  ER +F+L
Sbjct: 461 ----GLIHDIADLYTLQTADIC------RLERMGEKSAENIIQGIERSKEVPYERVLFAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG  +A+ +AK + S +  A            +   LI V  +G+ IA +I++++ 
Sbjct: 511 GIRFVGETVAKKVAKAFRSIEALASA----------NLDDLIHVDEIGEKIAGSIIQYFA 560

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           N +N   VE L +         E     S +++   +V +G   +  R + +  + + G 
Sbjct: 561 NEKNRILVERLRQSGLKLEADEEDLSGYSDKLKGMSIVISGVFARHSRDEYKALIEKHGG 620

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQY 721
                +S+KT  I+ GDN G SKLEKAQQL + I +E +FL ++++ 
Sbjct: 621 KNVGSISKKTSFILAGDNMGPSKLEKAQQLNIPIKDENEFLAMIEEE 667


>gi|296119554|ref|ZP_06838112.1| DNA ligase, NAD-dependent [Corynebacterium ammoniagenes DSM 20306]
 gi|295967437|gb|EFG80704.1| DNA ligase, NAD-dependent [Corynebacterium ammoniagenes DSM 20306]
          Length = 700

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 212/717 (29%), Positives = 351/717 (48%), Gaps = 50/717 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L+ E+A+K  + L QE+  H + YY   +P I D+++DAL +   A+  A P L    
Sbjct: 8   DQLNPEEAQKRWAELAQEVRRHRELYYNE-QPAIPDADFDALFQELVALESAHPQLVV-- 64

Query: 70  DPNGPLNKIGGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            P+ P  ++G     + +   + H    +SL+ ++N ++L+ ++ R           +  
Sbjct: 65  -PDSPTQEVGSAPAADSAFADIEHLERLMSLDNVFNADELQDWLDRT---------PAEA 114

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPE 183
           +  E KIDG  I + Y  GK   AA RGDG  GED++A  R I +IP  L       +P 
Sbjct: 115 YLAELKIDGASIDLVYRDGKLATAATRGDGRVGEDITANARVIESIPHELQGSEEYPVPA 174

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHG 242
           ++E+RGE+Y+   DF ALN+E  + G++ +ANPRN+A+G LR  NP D   R L    HG
Sbjct: 175 LVEIRGEIYMRPEDFEALNEERASEGKQAFANPRNSAAGGLRMKNPDDVKKRRLRLVAHG 234

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           LG         Q++    +   G PV+    +  T   +          R    +++DG+
Sbjct: 235 LGAREGFTPTSQHDAYAAIAAWGLPVSPYTERVTTSKEVQDKVKYWADHRHDAEFEMDGV 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVD+   Q+ LG  +R+PRW I++K+  ++ +T+L +I++ +GRTG +TP A ++PV 
Sbjct: 295 VIKVDDLGSQRSLGATSRAPRWAIAYKYPPEEVTTKLRNIEVGVGRTGRVTPYAVMDPVF 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G+ ++ ATLHN+  +K            + + +GD V++++AGE+IP+V+  +  +R 
Sbjct: 355 VSGSTVSMATLHNQSEVKR-----------KGVLIGDTVIIRKAGEIIPEVLGPVEEKRD 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
                + FP  CP C +++         +  A  RC     C AQ   RL++   R AF+
Sbjct: 404 GTETEWVFPENCPSCGTKLA-----PQKEGDADWRCPNTRTCPAQLSARLEYLAGRGAFD 458

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IE LG++      +       +   +D+F L       +       G  + S   L  ++
Sbjct: 459 IEALGEKGAIDLIER----GVLEDESDLFDLTEELLKKSEVYTTKAGNVNASGKKLLSNL 514

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              R+  L R + +L IRHVG   AR++A  Y S            A  + D   +    
Sbjct: 515 ETARHTDLWRVLVALSIRHVGPTAARAIASRYGSLD----------AARSADVEDIAETD 564

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            VG +IA++  ++++   +   V+                    +E   +V TGTL+   
Sbjct: 565 GVGLVIAESFKDWFEIDWHRTIVDKWAAAGVTMAIDASDKPEQTLEGLTIVVTGTLENFS 624

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R  A+E +   G   S  +S+KTD ++ G+N GSK  KA+ LGV I+NE  F  LL 
Sbjct: 625 RDSAKEAIISRGGKASGSVSKKTDFVVAGENAGSKETKARDLGVTILNENGFETLLA 681


>gi|312898543|ref|ZP_07757933.1| DNA ligase, NAD-dependent [Megasphaera micronuciformis F0359]
 gi|310620462|gb|EFQ04032.1| DNA ligase, NAD-dependent [Megasphaera micronuciformis F0359]
          Length = 672

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 239/713 (33%), Positives = 370/713 (51%), Gaps = 46/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  ++A   L  L +++ ++   YY   KP I D +YD L R  + I  A P+   +   
Sbjct: 1   MEQDKAYARLLELREKLDFYSYQYYTLDKPTITDYDYDMLYRELETIEGAHPEWVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G +++    K TH  P LSL  ++N  +LR+F  R+     ++      + +E
Sbjct: 58  DSPTQRVGHKISGGFNKYTHDRPMLSLGDVFNDNELREFDRRVRSDLGEQVPQ---YVVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I + YE G FV    RGDG  GEDV+  +R I TIP     +    IE+RGEV
Sbjct: 115 LKIDGLAINLIYENGMFVRGVTRGDGVVGEDVTNNVRTIKTIPL-KIDSHSPHIEIRGEV 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+    F ALN +      +P+ANPRNAA+G LR+L+P     R L+FF + +G T  + 
Sbjct: 174 YMPVRAFDALNIQRSEDELEPFANPRNAAAGSLRQLDPQITAQRNLSFFAYAIGGTVGMT 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E+L+ ++ L F VN   R  ++   ++++ +     R  LPY  DG+V KV+ F+
Sbjct: 234 IHSQEELLEDLKKLRFHVNKEYRVFDSIEDVITFIHSWDERRDELPYATDGMVIKVNSFA 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG   + PRW I++KF  ++A T++  I + +GRTG+LTP A L PV + G  +  
Sbjct: 294 QQELLGNTVKIPRWAIAYKFPPERAKTKVEGISVTVGRTGVLTPAADLTPVRLAGTTVKR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYIK            +DIR+GD V++++AGE+IP+VV  +V ER      F  
Sbjct: 354 ATLHNEDYIK-----------EKDIRIGDTVIIQKAGEIIPEVVGPVVKERTGQENVFVM 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C   VVR          AA RC     C A   +++ HFVSR+A NI+GLG   
Sbjct: 403 PTHCPGCGHEVVRPDGE------AATRCVNP-ECPAILSQKVAHFVSRNAMNIDGLGDAI 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                +       I   +DI+ L++    S      + GF D S  NL  ++   + + L
Sbjct: 456 TAQLLQQ----GLIHRVSDIYDLKKEDLIS------LEGFADKSADNLLKAVEDSKKVGL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R +F+LGIR VGA+ AR LA+++ S +  A                L  +  +G  IA+
Sbjct: 506 ARVLFALGIRFVGAKAARILAEHFGSVEALAAA----------STEELTDIDEIGPRIAE 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++  + +       V AL         +  +   S    + +V TG L+ + R +A+E V
Sbjct: 556 SVHTWIRTDEARKLVAALEAAGVDMTAQKRQTKGSAFRGEIVVLTGKLETMTRKEAEEAV 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
              G   +  ++ KT +++ G +PGSK EKA+ LG  I++EE+F+  +Q+  T
Sbjct: 616 VAGGGKCTGSVTGKTTLVVAGADPGSKYEKARSLGTPIISEEEFIAWIQRDKT 668


>gi|304385588|ref|ZP_07367932.1| NAD-dependent DNA ligase LigA [Pediococcus acidilactici DSM 20284]
 gi|304328092|gb|EFL95314.1| NAD-dependent DNA ligase LigA [Pediococcus acidilactici DSM 20284]
          Length = 675

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 229/717 (31%), Positives = 378/717 (52%), Gaps = 51/717 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PIE +++ +A +    L +++    + YY    P + D  YD       A+  AFP++A 
Sbjct: 6   PIEKMNLTEANELAEQLREKLDRWSELYYTKDAPEVEDYVYDENYADLQALEQAFPEIA- 64

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+    ++GGE+     KVTH+ P LS+  +++ E+L +F  RI +       + + 
Sbjct: 65  --SPDSITQRVGGEVLAGFTKVTHTEPMLSMGDVFSKEELAEFDQRIQKNVG----HPVD 118

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  I++ YE GK V  + RGDG+ GED++  ++ I ++P   +L+ P  +EV
Sbjct: 119 YNVELKIDGLAISLVYEDGKLVQGSTRGDGNIGEDITKNLKTIKSVP--QTLSRPLSLEV 176

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE Y+ K  F  LN++  A G+  +ANPRNAA+G LR+LN      R L+ F++ L + 
Sbjct: 177 RGECYMPKAAFAKLNEQQSAAGKSVFANPRNAAAGSLRQLNTQITKARELDTFIYTLVEP 236

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
             +  + Q+E +Q M  LGF  N      ++   +  Y    +  R  LPY IDG+V KV
Sbjct: 237 EVLGVQTQHEAIQAMAELGFNTNPTQTVCHSLEEVWDYIERYEGQRDDLPYGIDGIVLKV 296

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++  LQ +LG   + PRW I++KF  ++ +T + DI+  +GRTG++TP A ++PV + G 
Sbjct: 297 NDLGLQAELGHTVKVPRWEIAYKFPPEEEATVVRDIEWSVGRTGVVTPTAVMDPVQLAGT 356

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ ATL+N D +             +D+R+GD VL+ +AG++IP++  +++++R  D  
Sbjct: 357 TVSRATLNNVDQL-----------TAKDVRIGDTVLLHKAGDIIPEITRVVLDKRPADVA 405

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
             + P+ CP C   +V            A RC     C AQ + RL+HF SR+A NI GL
Sbjct: 406 DLTIPNQCPSCGKELVHLNGE------VALRCINP-DCPAQIVARLEHFGSRNAMNIMGL 458

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +Q+   +        I    D++ L   Q +       + GF +  V NL ++I+  R
Sbjct: 459 GPKQIQQLYAK----GFIHHFDDLYKLTADQLS------QLDGFKEKRVNNLLEAIDSSR 508

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             SLER +  LGI+ VG ++AR+LA+ + S     +                  V  VG+
Sbjct: 509 QNSLERLVNGLGIQGVGTKMARTLAEAFGSMDRLMEA----------SVEEFDAVDTVGE 558

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQR 663
            +A  +  F+Q+      ++ L            +  +   +    KK+V TG L+   R
Sbjct: 559 TLANNLATFFQSEAARNMIDELKAVDVNMEYLGAQPSEAPENYFNGKKVVLTGKLEHFTR 618

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ +E +  LGA V+  +S+KTD++I G + GSKL KAQ LGV++++E   L  L+Q
Sbjct: 619 NELKEKLLNLGADVAGSVSKKTDVLIAGADAGSKLTKAQDLGVEVIDEATALEKLEQ 675


>gi|222110866|ref|YP_002553130.1| NAD-dependent DNA ligase [Acidovorax ebreus TPSY]
 gi|254781316|sp|B9MIW4|DNLJ_DIAST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221730310|gb|ACM33130.1| DNA ligase, NAD-dependent [Acidovorax ebreus TPSY]
          Length = 740

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 248/743 (33%), Positives = 381/743 (51%), Gaps = 81/743 (10%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              ++ +L ++++     YY    P + D+EYD   +   A+  A+PDL     P+ P  
Sbjct: 28  VAAKIKALREQLNRWAHEYYVQDTPSVPDAEYDRAFQELQALEGAYPDLV---TPDSPTQ 84

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKDD-NSIFFTLEPK 133
           ++ G +   L  V H +P LS+    + E    + F  R+ R  +   D   + +  EPK
Sbjct: 85  RVLGAVLDGLTPVRHRVPMLSIRTETDTEASGAQAFDARVRRELKLPPDAPPVEYVAEPK 144

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  +++RYE G+ V AA RGDG  GEDV+  +R I  IP  L   +P ++EVRGEVY+
Sbjct: 145 FDGLAMSLRYEGGRLVQAATRGDGEVGEDVTHNVRTIRQIPLSLPAGVPRVLEVRGEVYM 204

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE---- 248
            + DF ALN+     G K + NPRNAA+G +R+L+      R L+FF +GLG+ +     
Sbjct: 205 RRADFDALNERQREKGDKTFVNPRNAAAGAVRQLDSGITAQRPLSFFAYGLGEVTPAAEG 264

Query: 249 -IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  + MLQ+++  GFPV   V+ A     +++++  + + R  LPYDIDG+VYKV+
Sbjct: 265 GPDFGTHFGMLQQLKEWGFPVAAQVQIAQGASELIAFHQRVGAERDALPYDIDGVVYKVN 324

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             +LQ+QLG   R PRW ++HK+  ++  TR+  ID+Q+GRTG LTPVARL PV +GG  
Sbjct: 325 SLALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKLTPVARLAPVFVGGVT 384

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV------------- 414
           +TNATLHN   ++            + +RVGD+V+V+RAG+VIP+VV             
Sbjct: 385 VTNATLHNLFELRR-----------KKVRVGDQVIVRRAGDVIPEVVGVVPAGAGLAVLA 433

Query: 415 ------------------DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456
                               +   R P    F  P  CPIC S VVR+           H
Sbjct: 434 GSDALVDAASSADGTAPAQPLAGPRQPYVPNFRMPRQCPICGSAVVREPGE------VNH 487

Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516
           RC+GGL C AQ+ + + HF  R A +IEGLG++ +D   +       IR   D++ L   
Sbjct: 488 RCSGGLFCPAQRKQAVLHFAQRRAMDIEGLGEKLVDQLVE----GHVIRTLPDLYRL--- 540

Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                + +  +    + S  N+ D+++K +  +L RF+F LGIRHVG   A+ LA+++  
Sbjct: 541 ---GLSSLAQLDRMAEKSAQNVLDALDKSKRTTLARFLFGLGIRHVGEATAKDLARHFGR 597

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
                                L++V  VG ++A+AI  F+  P N   VE L        
Sbjct: 598 LDAIMDA----------GVEQLLQVNDVGPVVAEAIHTFFAQPHNREVVEQLRACGVTWD 647

Query: 637 G-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
                   +  +    +V TGTL  + R  A++ +   GA V+  +S+KT  ++ G + G
Sbjct: 648 ESEPAAAATLPLAGMTVVLTGTLPTLGRDAAKDLLESAGAKVAGSVSKKTHYVVAGADAG 707

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SKL KAQ+LG+ +++E+    LL
Sbjct: 708 SKLAKAQELGIPVLDEDGLRALL 730


>gi|188585101|ref|YP_001916646.1| DNA ligase, NAD-dependent [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|254781378|sp|B2A5W5|DNLJ_NATTJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|179349788|gb|ACB84058.1| DNA ligase, NAD-dependent [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 663

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 246/710 (34%), Positives = 386/710 (54%), Gaps = 50/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S +  +K++ +L ++I YH+  YY    P I D E+DAL      +   +P+    + P
Sbjct: 1   MSKD-IQKKVEALREKIEYHNHRYYVLDAPEISDQEFDALMNELIELEQTYPEY---QSP 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE      +V+H IP LSLE   + + L  F  R+ +  QK D     +  E
Sbjct: 57  DSPSQRVGGEPLDKFPRVSHEIPMLSLENAESQKGLLDFHQRVSKNTQKTDPV---YVAE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE+G  V  A RGDG +GED++  ++ + +IP  L L+ P  IE+RGE 
Sbjct: 114 LKIDGLALSLRYEQGILVRGATRGDGTTGEDITPNVKTVRSIP--LKLSKPLDIEIRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           ++SK  F  LN E    G  P+ANPRNAA+G LR+L+P     R L+FF + +       
Sbjct: 172 FMSKASFERLNQEKAERGEDPFANPRNAAAGSLRQLDPKIPAKRDLDFFPYSVPYIRGEN 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  +++++ LGF +N  +R+  T   ++SY  E +  R+ LPY+IDG+V K+++++
Sbjct: 232 LDSHYSAVKELKDLGFKINPYIRKFETMEEVISYCEEWQEKRTKLPYEIDGVVIKLNDYN 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  +++PRW I++KF  +QA +++ +I I +GRTG LTPV  LEPV I G+ +  
Sbjct: 292 LQQQLGATSKNPRWAIAYKFPAEQAESQVNNIFINVGRTGALTPVVELEPVRIAGSTVKR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED ++            +D+R+GDRV++++AG++IP+VV +    R    QPF +
Sbjct: 352 ASLHNEDILR-----------QKDVRIGDRVIIQKAGDIIPEVVKVKEEARTGHEQPFVY 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C+S   R  +       A  RC     C AQ  ER+ HF SRDA +IEGLG++ 
Sbjct: 401 PESCPVCKSEAKRINDE------AILRCINP-GCPAQAKERIIHFSSRDAMDIEGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  +        I+  ADI+ L +       ++ N+ GFGD S  NL  +I + +    
Sbjct: 454 VEKLYSH----GLIKDVADIYYLAK------NELSNLEGFGDKSAENLLQAIEESKKNPF 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + ++ LGIR VG   A+ LA  +    N  +               L ++  +G  +A 
Sbjct: 504 NKLLYGLGIRLVGKRAAQLLAFEFEHLDNLMKA----------QIEDLTKINDIGPRMAT 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQE 668
           +IV F+Q       +  L K         E+N SS   +  K +V TGT     R +  +
Sbjct: 554 SIVSFFQLEHTHNLIRKLKKAGVNMKEPTEQNKSSDPSLTGKLVVITGTFDNYTRRELTD 613

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +   GA V++ +S  TD ++VG NPGSK +KAQ LG+ I+ E      L
Sbjct: 614 LIEAKGAKVTSNVSSNTDFVLVGANPGSKRDKAQDLGLTIIEESDLEDFL 663


>gi|239618216|ref|YP_002941538.1| DNA ligase, NAD-dependent [Kosmotoga olearia TBF 19.5.1]
 gi|239507047|gb|ACR80534.1| DNA ligase, NAD-dependent [Kosmotoga olearia TBF 19.5.1]
          Length = 672

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 249/710 (35%), Positives = 380/710 (53%), Gaps = 47/710 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
              +    L +E++YH   YY  + PII D EYD + +    +   +P+L     P+ P 
Sbjct: 6   DVIERAKKLREELNYHAYRYYVLNDPIITDEEYDRMLKELQELEKKYPELI---TPDSPT 62

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            +IG +      +V HS    SL+  ++ E+L+ F  RI +    +    + +  E KID
Sbjct: 63  QRIGAKPLNGFEQVIHSSRLYSLDNTYSEEELKGFDRRIKKLLNVE---QLDYVCELKID 119

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+RYE+G  V  A RGDG  GE+V+  IR I +IP  L L  P  IE+RGEVY+ K
Sbjct: 120 GLSVTLRYEEGILVLGATRGDGTVGENVTKNIRTIKSIP--LRLRKPLTIEIRGEVYLPK 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQ 254
           ++F  +NDE        +ANPRNAA+G LR+L+P +   R L+ F + +        + Q
Sbjct: 178 SEFKKINDERAEQELPLFANPRNAAAGTLRQLDPKEVAKRNLDAFFYQIVSPENYELETQ 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E+LQ ++ +G       R  +    ++ ++ E    R+ L Y IDGLV KV+    Q +
Sbjct: 238 WEVLQFLKEIGMKTEPHARLVSDISEVIEFWKEWSESRNNLDYAIDGLVVKVNRIEFQNK 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I+ KF  +QA T+LLD+  Q+GRTG++TPVA LEPV + G ++  ATLH
Sbjct: 298 LGYTAKSPRWAIAFKFPAEQARTKLLDVTFQVGRTGVITPVAELEPVKLAGTIVKRATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N DYI+            RDIR+GD V+V++AGE+IP++V  I   R    +    PS C
Sbjct: 358 NFDYIR-----------DRDIRIGDTVIVEKAGEIIPQIVKPIAETRSGKEKVIEPPSSC 406

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C  +V      K  +   A RC    AC A+   R+  FVSR+A +I GLG++ +   
Sbjct: 407 PVCGGKVG-----KAKEDEVALRCLNP-ACPAKTERRILLFVSRNAMDINGLGEKMIKRL 460

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
             S      ++ PAD++ L           +   G G+ ++ N Y  + K R   L + +
Sbjct: 461 VHS----GLVKSPADLYKLTPFDL-----AQLGNGIGEKTIRNFYKELEKSRKRPLHKLL 511

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             LGI  VG ++AR LA+++ +                     L+ VP +G  +A+ IVE
Sbjct: 512 AGLGIPGVGVKLARDLAEHFKTLDALQNAT----------IDQLLEVPGIGLELAKNIVE 561

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+  P     +E L KEV+ S    +K    + +  K V TGTL+   R +A+E +  LG
Sbjct: 562 FFNLPEIKEEIEHLKKEVNTSERSSKKEELLKGK--KFVLTGTLKNFTRKEAEELIVSLG 619

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             VS+ +S+ TD ++VG+NPGSK +KA+ L VK +NEE+F+ L+++    
Sbjct: 620 GKVSSSVSKNTDFVVVGENPGSKFQKAKALNVKTINEEEFIKLIREGEKN 669


>gi|254776288|ref|ZP_05217804.1| NAD-dependent DNA ligase LigA [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 681

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 217/709 (30%), Positives = 342/709 (48%), Gaps = 43/709 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R++   L + +  H   YY    PII D+E+DAL     A+    P+L  +   + P   
Sbjct: 2   RRQWQELAETVREHQFRYYIKDAPIISDAEFDALFNELLALEERHPELRVA---DSPTQL 58

Query: 78  IGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +GG        +  H    LSL+ +++ ++L  +  R+     K       +  E KIDG
Sbjct: 59  VGGAGFATDFAEAAHLERMLSLDDVFDTDELIAWSNRVENEIGKDPH----YLCELKIDG 114

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVY 192
             +++ Y  G+   AA RGDG  GEDV+   R I  +P  L       +P ++EVRGEV+
Sbjct: 115 VALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLSPSDDFPVPALLEVRGEVF 174

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF ALN  ++  G+ P+ANPRN+A+G LR+ NP     R L    HG+G+T     
Sbjct: 175 FLLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGRTEGFSP 234

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K Q+E    +   G PV     +      +          R  L ++IDG+V KVD+ +L
Sbjct: 235 KTQHEAYTALSVWGLPVAEQTARVRGLAAVQERIGYWGEHRYELQHEIDGVVVKVDDVAL 294

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW +++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ +  A
Sbjct: 295 QRRLGATSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVGLA 354

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+V+  +V+ R    + F  P
Sbjct: 355 TLHNAAEVKR-----------KGVLIGDTVMIRKAGDVIPEVLGPVVDLRDGTEREFVMP 403

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +         +  A  RC    +C AQ  ER+ H   R A +IEGLG +  
Sbjct: 404 TTCPECGTPLA-----PAKEGDADIRCPNARSCPAQLRERVFHVAGRGALDIEGLGYEAA 458

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                    A  I    D+F L       T       G    + T L  ++ K + ++L 
Sbjct: 459 TALL----TAGVIADEGDLFALTEDDLLRTELFRTKAGTLSANGTRLLQNLQKAKKVALW 514

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R + +L IRHVG   AR+LA  +    +                  L  V  VG  IA A
Sbjct: 515 RVLVALSIRHVGPTAARALATEFGDLDSIMSA----------STERLAAVEGVGPTIAAA 564

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           + E++    +   V+             + +V   +E   +V TG+L    R  A+E + 
Sbjct: 565 LTEWFTVDWHRAIVDKWRAAGVRMADERDASVPRTLEGLTVVVTGSLAGFSRDDAKEAIL 624

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             G   +  +S+KTD ++ GD+PGSK +KA +LGV I++E+ F  LL +
Sbjct: 625 ARGGKAAGSVSKKTDYVVAGDSPGSKYDKAVELGVPILDEDGFRKLLAE 673


>gi|119487266|ref|ZP_01621017.1| DNA ligase [Lyngbya sp. PCC 8106]
 gi|119455821|gb|EAW36956.1| DNA ligase [Lyngbya sp. PCC 8106]
          Length = 685

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 222/711 (31%), Positives = 365/711 (51%), Gaps = 55/711 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E L+  + ++ +  L Q++      YY    PII D+ YD L R    +   +P L   
Sbjct: 1   MEQLT-SEIQQRVQKLSQQLHLASYAYYVLDAPIIEDAIYDQLYRELQQLETDYPQLI-- 57

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN---- 124
             P+ P  ++G +       V H+IP  SLE  +N E+L+ +  R  +  + +D      
Sbjct: 58  -TPDSPTQRVGEKPATQFTSVRHNIPLYSLENAFNTEELKAWDGRWKKVLKTEDKEINYS 116

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPE 183
              +  E KIDG+ + + YE G  V    RGDG +GE+++  ++ I +IP  L   + P 
Sbjct: 117 EPLYICELKIDGSALALTYENGILVRGTTRGDGVTGEEITQNVKTIRSIPLRLKLESPPS 176

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHG 242
           I+EVRGE ++S N F  +N E        +ANPRNAA+G LR+L+     +R L+FF + 
Sbjct: 177 IVEVRGEAFLSLNIFAKINQERQQKDESLFANPRNAAAGTLRQLDSRIVRSRQLDFFAYT 236

Query: 243 LG-KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           +  +  EI  K Q++ L+ ++ +GF VN   +  ++   + +Y+ +  S R  L Y  DG
Sbjct: 237 VHLEGEEINLKTQWDCLELLQEMGFKVNPNRQLCHSLTEVQNYFEDWDSRRQNLSYMTDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V K++  SLQ+QLG   + PRW I+ K+  ++A T+LL + +Q+GRTG LTPVA LEP+
Sbjct: 297 VVVKINPLSLQEQLGFTQKFPRWAIALKYPAEEAPTKLLAVTVQVGRTGALTPVAELEPL 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  +  ATLHN D I  L           D+ +GD V+V++AGE+IP+VV  +   R
Sbjct: 357 QLAGTTVQRATLHNSDRIAEL-----------DLHIGDTVIVRKAGEIIPEVVRNLPELR 405

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             +AQPF  P+ CP C   VV+          A  RC    +C A     L H+ SRDA 
Sbjct: 406 PTNAQPFQMPTHCPECGQAVVKPQTE------AVTRCINT-SCPAILRGSLIHWCSRDAV 458

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I G+G++ +    + +     I   AD++ L         K+  +   G+ S T + ++
Sbjct: 459 DINGVGEKLVQQLVERK----LISSVADLYELTVE------KLTQLERIGEKSATKIVNA 508

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           + + +     R ++ LGIRHVG+  A  L + +L+ +  A                +  V
Sbjct: 509 VTESKTQPWARVLYGLGIRHVGSVNAELLTQKFLTVEQLADSTPA----------DIEGV 558

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFT 655
             +G  IA ++ E+++ P N   +E L ++      +        +     +  K  V T
Sbjct: 559 YGIGTEIAFSVEEWFKVPANQALIERLKQQGLNLASQPSPESSLSQKQDLNLSGKTFVLT 618

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           GTL  ++R +A++ +   G  V+  +S KTD ++VG++ GSKL+KAQ+L +
Sbjct: 619 GTLPNLKRDEAKKLIQNAGGKVTGSVSSKTDYVVVGEDAGSKLKKAQELEI 669


>gi|315445158|ref|YP_004078037.1| DNA ligase, NAD-dependent [Mycobacterium sp. Spyr1]
 gi|315263461|gb|ADU00203.1| DNA ligase, NAD-dependent [Mycobacterium sp. Spyr1]
          Length = 701

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 221/720 (30%), Positives = 346/720 (48%), Gaps = 47/720 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +AL  +  R+    L  E+  H   YY    PII D+E+D L RR  A+   +P+L    
Sbjct: 8   DALDPD-LRRSWQELADEVREHQFRYYIRDAPIITDAEFDQLLRRLQALEDEYPEL---R 63

Query: 70  DPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            P+ P   +GG           H    LSL+ ++++E+L  +  RI             +
Sbjct: 64  TPDSPTQLVGGAGFATDFTAAEHLERMLSLDNVFDLEELAAWAARIRTEIGADA----QY 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE----I 184
             E KIDG  + + Y  G+   AA RGDG +GEDV+   R I  IP  LS         +
Sbjct: 120 LCELKIDGVALALVYRDGRLERAATRGDGRTGEDVTLNARTIEDIPERLSGTNEFPLPTV 179

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +EVRGEV+    DF  LN  ++A G+ P+ANPRN+A+G LR+ NP     R L    HGL
Sbjct: 180 LEVRGEVFFRVADFEDLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRRLRMICHGL 239

Query: 244 GKTSEI---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           G             ++  + ++  G PV++   Q      +          R  + ++ID
Sbjct: 240 GHVESSGGSPFPTLHDAYRALKAWGLPVSDHTAQVTGLDAVTERIAYWGEHRHDVEHEID 299

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KVD  +LQ++LG  +R+PRW +++K+  ++A TRLLDI + +GRTG +TP A +EP
Sbjct: 300 GVVVKVDAVALQRRLGATSRAPRWAVAYKYPPEEAQTRLLDIRVNVGRTGRVTPFAYMEP 359

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G+ +  ATLHN   +K            + + +GD V++++AG+VIP+V+  +V+ 
Sbjct: 360 VKVAGSTVGLATLHNASEVKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVDL 408

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R    + F FP+ CP C S +         +  A  RC    +C AQ  ER+ H   R A
Sbjct: 409 RDGSEREFVFPTHCPECGSELA-----PAKEGDADIRCPNTRSCPAQLRERVFHVAGRGA 463

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           F+IEGLG +      +S      I    D+F L       T       G    +   L  
Sbjct: 464 FDIEGLGYEAATALLQS----GVIADEGDLFGLTADDLLRTELFTTKAGELSANGKRLLA 519

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           ++ K +   L R + +L IRHVG   AR+LA  + S +                   L  
Sbjct: 520 NLGKAKAQPLWRVLVALSIRHVGPTAARALATEFGSLEAIETASE----------EQLAG 569

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
              VG  IA A+++++    +   V+   +         + ++   +E   +V TG+L  
Sbjct: 570 TEGVGPTIAAAVIDWFTVDWHRAIVDKWREAGVRMADERDASIERTLEGLSIVVTGSLAG 629

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             R +A+E +   G   +  +S+KT  ++ GD PGSK +KA +LGV +++E+ F  LL +
Sbjct: 630 FSRDEAKEAIIARGGKAAGSVSKKTAYVVAGDAPGSKYDKAIELGVPVLDEDGFRRLLAE 689


>gi|302865766|ref|YP_003834403.1| DNA ligase, NAD-dependent [Micromonospora aurantiaca ATCC 27029]
 gi|302568625|gb|ADL44827.1| DNA ligase, NAD-dependent [Micromonospora aurantiaca ATCC 27029]
          Length = 717

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 224/709 (31%), Positives = 361/709 (50%), Gaps = 43/709 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR+  ++L QE++ H   YY    P + D+E+D   R  +A+   +P L     P+ P  
Sbjct: 32  ARERHATLSQELTEHQYRYYVLDAPTVTDAEFDKQLRELEALEAEYPAL---RTPDSPTQ 88

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG  +     VTH+   LSL+  +  E+L  +  R+ R         + +  E K+DG
Sbjct: 89  RVGGTFSTDFTPVTHAERMLSLDNAFADEELAAWSERVER----DAGGPVPYLCELKVDG 144

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-----SLNIPEIIEVRGEV 191
             I + YEKG+ V AA RGDG +GEDV+A +R+I  +P  L       ++P++IEVRGE+
Sbjct: 145 LAINLTYEKGRLVRAATRGDGRTGEDVTANVRSIKGVPARLTPAGDFPDVPDLIEVRGEI 204

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y     F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L   VHG+G  +   
Sbjct: 205 YFPVAAFADLNASLVEQGKAPFANPRNAAAGSLRQKDPRVTASRPLRLVVHGVGARTGFR 264

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E    ++  G P ++  R  +   G+  Y       R  + ++IDG+V KVD  S
Sbjct: 265 PAAQSESYAALKAWGLPTSDRWRVVDDLAGVAEYIAYYGRHRHDVEHEIDGVVVKVDPVS 324

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I+ K+  ++ +T+LLDI++++GRTG +TP A L+PV + G+ +  
Sbjct: 325 IQGRLGSTSRAPRWAIAFKYPPEEVNTKLLDIEVEVGRTGRVTPRAVLQPVRVAGSTVAY 384

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN   ++            + + +GD V++++AG+VIP+V+  +V  R  DA+PF  
Sbjct: 385 ATLHNAREVER-----------KGVLIGDTVVLRKAGDVIPEVLGPVVELRPADARPFVM 433

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + +         +     RC  G AC  Q  ER+ +  SR   +IE LG++ 
Sbjct: 434 PTTCPACGTPLA-----PAKESDVDIRCPNGRACPGQIRERVFYLASRKVLDIEVLGEKG 488

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                 ++     I    D+F L   Q + +    N  G    + T L D++ + +   L
Sbjct: 489 AAALLDAQ----IITNEGDLFQLDAEQLSRSPFFVNKDGSLGSNATKLLDNLAEAKERDL 544

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IRHVG   A++LA+++ S          + A        L  V  VG  IA 
Sbjct: 545 WRVLVALSIRHVGPTAAQALARHFRS----------VAAIEAAGEEELSSVDGVGPTIAA 594

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ E++    +   V    +                ++   +V TGTL    R +A E +
Sbjct: 595 SVKEWFAVDWHRDVVRKWAEAGVRMAEEAADEGPRPLDGITVVVTGTLSGFSRDQAAEAI 654

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G  V+  +S+KT  ++VGDNPGSK +KA  L + I++E+ F  LL 
Sbjct: 655 QVRGGKVTGSVSKKTGFVVVGDNPGSKADKAATLKLPILDEDGFRVLLD 703


>gi|317132010|ref|YP_004091324.1| DNA ligase, NAD-dependent [Ethanoligenens harbinense YUAN-3]
 gi|315469989|gb|ADU26593.1| DNA ligase, NAD-dependent [Ethanoligenens harbinense YUAN-3]
          Length = 661

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 222/704 (31%), Positives = 348/704 (49%), Gaps = 52/704 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            A      L + +S H+  YY    P I D EYD + R  + +  A P++     P+ P 
Sbjct: 2   DAAARAKELRKALSRHNYLYYVLDAPEIEDFEYDRMLRELEELEAAHPEIV---TPDSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GGE       V H +P  SL+ ++++E++R F  R++         ++ + +EPKID
Sbjct: 59  QRVGGEAVGQFEPVRHEVPMESLQDVFSVEEVRAFDERMHAALS-----TVRYAVEPKID 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y  G FV  + RGDG +GEDV+A +R + +IP  L       +EVRGEV++  
Sbjct: 114 GLSVALEYRNGLFVRGSTRGDGVTGEDVTANLRTVRSIPLRL-SRPLPFLEVRGEVFMPV 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254
             F AL         K + NPRNAA+G LR+ NP   +   L+ FV  + +      +  
Sbjct: 173 AKFEALVRAQELREEKLFKNPRNAAAGSLRQKNPKITSARGLDIFVFNIQRIEGATVESH 232

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
                 ++ LGF V       +T     +    +   R +LPY IDG V KVD+F+ ++ 
Sbjct: 233 LAGHALLKELGFKVVAHTA-CDTLEKTETEITRIGESRGSLPYGIDGAVVKVDDFTARRM 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+ PRW ++ KF  ++  T LL IDI +GRTG LTP A LEPV + G+ +  A+LH
Sbjct: 292 LGSTAKFPRWAVAFKFPPEEKRTGLLSIDINVGRTGALTPTAVLEPVLLAGSTVARASLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED+I+            +DIR+GD V+V++AG++IP++V +  +      +P+  P+ C
Sbjct: 352 NEDFIR-----------EKDIRIGDTVVVRKAGDIIPEIVSVAEH---GGGKPYRMPTAC 397

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + V R+ +       A  RC     C AQ L  L HF SRDA +IEG+G   ++  
Sbjct: 398 PSCGAPVAREKDE------AVLRC-QNPDCPAQLLRHLIHFASRDAMDIEGMGPALVESL 450

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    +R  AD++ L          +  +   G  S  NL  +I   +   L R +
Sbjct: 451 VGE----GLVRSIADVYDLNAE------AVAKLERMGKKSAENLIAAIETSKRAGLARLL 500

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LG+R VG + A  +A  + S +                   L  +  +G IIA+ +V 
Sbjct: 501 YALGVRQVGQKAAGLIAARFGSMERLFSATE----------DELCAIDEIGGIIAENVVR 550

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+        VE L         R ++   + +  +  V TGTL K  R +A++ +  LG
Sbjct: 551 FFALEDTARLVERLRAAGVDLTAREQEVADTRLSGQIFVLTGTLSKYSREEAKKRIEALG 610

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             V+  +S+KT  ++ G+  GSKL+KA  LGV +++E  F  LL
Sbjct: 611 GKVTGSVSKKTSYVVAGEEAGSKLDKALALGVPVLDEAAFEQLL 654


>gi|67458584|ref|YP_246208.1| NAD-dependent DNA ligase LigA [Rickettsia felis URRWXCal2]
 gi|67004117|gb|AAY61043.1| DNA ligase, NAD-dependent [Rickettsia felis URRWXCal2]
          Length = 706

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 269/695 (38%), Positives = 406/695 (58%), Gaps = 29/695 (4%)

Query: 26  QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85
            +I+ ++  YY    P++ DSEYD L      +   FP L      N P  KIG ++   
Sbjct: 38  DKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLVLE---NSPSKKIGAKITNK 94

Query: 86  LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145
             K+TH IP LSL   ++ +D+R F+ RI  F +  +   I    EPKIDG   +  Y+ 
Sbjct: 95  FAKITHQIPMLSLSNAFDEQDVRDFVDRIKNFLRLDEFAPI--FCEPKIDGLSFSAIYKN 152

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
           G     A RGDG+ GED++A I+ I   P     N PE +EVRGE+YI K DFL LN E 
Sbjct: 153 GLLTTGATRGDGYVGEDITANIKTIKNFPH-KIDNAPEFLEVRGEIYIEKQDFLNLNKEQ 211

Query: 206 IAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
              GR  +ANPRNAA+G LR+L+ +    R L +FV+  G T +  A  Q ++L K++  
Sbjct: 212 EEQGRDKFANPRNAAAGSLRQLDASITAQRSLKYFVYSGGVTEQNLASSQEQLLIKLKEF 271

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           GF VN   +  N+   I ++Y  +K+ R  LPY+IDG+VYK+++F+LQ ++G  ARSPR+
Sbjct: 272 GFSVNEISKLTNSEEEIFTFYEYLKTNRENLPYEIDGVVYKLNDFALQNRMGFIARSPRF 331

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
             +HKF      T+LL I +Q+GRTG LTPVA LEP+ IGG  ++ ATLHN   I     
Sbjct: 332 ATAHKFPAIIGRTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSRATLHNFQEIMR--- 388

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                   +D+R+ D V ++RAG+VIPK+  + + +R  D   F  P FCP C S++   
Sbjct: 389 --------KDVRIDDYVFLQRAGDVIPKITGVDIGKRPNDTIAFDTPLFCPSCNSKLHY- 439

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
                       RC  GL C AQ  ER++HFVS++A +IEGLG++Q++F          I
Sbjct: 440 -----APEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLIDK----GLI 490

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
             P DIF L+ +  +S TK+EN+ G+G  SV NL+ +I + +N+SL RFI++LGIRH+G 
Sbjct: 491 SNPLDIFFLKEKNDSSLTKLENMDGWGKKSVENLFKNIEQSKNVSLPRFIYALGIRHIGE 550

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
           + A+ LA+ + SY NF  ++  +  ++ D +  L  +  +GD I   I++F+    N   
Sbjct: 551 QNAKLLAREFGSYANFIAQMELLSKNDLDIYQKLNDLEGIGDKILVDIIDFFDVKENTTL 610

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
           ++ L + ++    +  +  SS +  K +VFTG+L  I R +A+    +LGA V+A +S  
Sbjct: 611 IKKLGEVLNIEDYKETREQSS-LTGKIIVFTGSLPTISRAEAKATAEKLGAKVAASVSSN 669

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           TD+++ G + GSKL+KA++L +KI+ EE++L L++
Sbjct: 670 TDLVVAGVDAGSKLKKAKELNIKIIGEEEWLTLIK 704


>gi|329767007|ref|ZP_08258535.1| DNA ligase [Gemella haemolysans M341]
 gi|328837732|gb|EGF87357.1| DNA ligase [Gemella haemolysans M341]
          Length = 663

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 237/708 (33%), Positives = 378/708 (53%), Gaps = 48/708 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++Q ++++S L   ++ +   YY    P I D+EYD L ++ + +    P+       N 
Sbjct: 1   MKQVQEKISKLVSLLNKYSYDYYVEDNPQISDTEYDTLYKQLEKLEENHPEYILE---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G  +     K+TH +P LSL   ++ EDLR F  RI +      D+S+ +  E K
Sbjct: 58  PTQRVGDRVLDEFEKITHKVPMLSLSNTFSTEDLRDFDARISKLV---PDHSVEYICELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+I+YE G+ V AA RGDG  GEDV+  I+ I +IP+VL  N     EVRGEVY+
Sbjct: 115 IDGLAISIKYEDGRLVSAATRGDGSIGEDVTENIKTIFSIPKVLKDNR--TFEVRGEVYL 172

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +  F  LN E  +     +ANPRNAA+G LR+L+                   +     
Sbjct: 173 PRKSFELLNSERESNNEVLFANPRNAAAGSLRQLDSKIT-AKRRLSAFIYSIVGDDSIVS 231

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q   L   +    PVN   +       ++ Y N     +  LPYDIDG+V KV+ +S Q+
Sbjct: 232 QENALNTAKEYDLPVNPNFKLCKNIDEVIDYINYWTEHKKDLPYDIDGIVIKVNSYSTQE 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           ++G   +SPRW  ++KF E++ +T+LLD+++ +GRTGI+TPVA L+P+ I G+ ++ A+L
Sbjct: 292 KVGYTQKSPRWATAYKFPEEELATKLLDVELSVGRTGIITPVAILDPIVISGSTVSKASL 351

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+D I+ L           DI + D V+VK+AGE+IPKVV ++   R   +  +  P+ 
Sbjct: 352 HNKDIIEEL-----------DIHIDDMVVVKKAGEIIPKVVRVVRELRTESSTKYVMPNT 400

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C  +     N    +            C  Q + R+ HF SRDA NIEGLG + +  
Sbjct: 401 CPSCGQQTYTKENDPFTR-------CKNPDCPDQNIRRIIHFASRDALNIEGLGDKVVAT 453

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            ++       I    D+F+L+R +  S      +   G+ S  NL ++I   +  SL++ 
Sbjct: 454 LYEK----GIIAHTIDLFSLEREKLIS------LDRMGEKSADNLLNAIENSKKSSLDKV 503

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGI +VG +  + LA+ YL+  N                  L+ +  VG I A++I+
Sbjct: 504 IFALGILNVGKKAGKILAEKYLNLSNLMNAT----------LDELVNLDDVGQITAESIL 553

Query: 614 EFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++  +  NI  +  L+K   +P     E N  +    K +V TG L ++ R++A+EY+ +
Sbjct: 554 DYLSDENNIKFINDLIKVGMNPQYEIQEVNTDNIFAGKTVVLTGKLVELTRNEAKEYLEK 613

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            GA V+  ++ KTD++I G+  GSKL KA+QLG+K++NEE+F  ++++
Sbjct: 614 YGAKVTGSVTSKTDLVIAGEKAGSKLAKAEQLGIKVINEEEFANMVRE 661


>gi|116071920|ref|ZP_01469188.1| DNA ligase [Synechococcus sp. BL107]
 gi|116065543|gb|EAU71301.1| DNA ligase [Synechococcus sp. BL107]
          Length = 682

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 211/711 (29%), Positives = 340/711 (47%), Gaps = 47/711 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +  S L   ++     YY    P + D+ YD L R    +    P L  +   + P  ++
Sbjct: 6   ERASELRNLLNTAAHAYYVLDTPTMEDAVYDRLYRELLELEQTTPSLKTA---DSPTQRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG        V H I  LSL+  ++ +DL  +  R+ R   +   + +    E KIDG  
Sbjct: 63  GGAPAEGFTNVEHRIGLLSLDNAFDRDDLNAWNERLLRAIDRPLGSPLELVSELKIDGNA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197
           + + Y  G    AA RGDG  GE+++A +R I  IP  L   N PE +E+RGE +I  N 
Sbjct: 123 LALSYRNGVLERAATRGDGQRGEEITANVRTISAIPLRLQLDNPPEWVEIRGEAFIPDNT 182

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N E  + G   +ANPRNA +G LR+L+P     R L+FF + L   ++     Q++
Sbjct: 183 FAEINAERESRGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPAQAQPSSQWD 242

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +   GF VN           I  + +  +  R  LPY  DG+V K++   LQ + G
Sbjct: 243 ALAWLENAGFRVNPNRSLCADLAEINRFSDHWEQGRHDLPYATDGVVVKLNSLVLQDEAG 302

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I+ KF  ++A +RLL + +Q+GRTG++TPVA  EPV + G  ++ ATLHN 
Sbjct: 303 FTQKSPRWAIALKFPAEEAPSRLLRVVVQVGRTGVITPVAEFEPVALAGTSVSRATLHNA 362

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+ +GD ++V++AGE+IP+VV ++   R   A P   P  CP 
Sbjct: 363 DRIAEL-----------DLHLGDTIVVRKAGEIIPEVVRVLPELRPSSATPVQLPEHCPE 411

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR+ +       AA RC    +C A     L+H+VS+ A +++GLG + ++    
Sbjct: 412 CGSNLVREGDE------AATRCVNS-SCPAILRGGLRHWVSKGALDVDGLGSKLIEQLVD 464

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +   AD++ L     +S      +   G+ S  NL +++   R  S  R ++ 
Sbjct: 465 Q----GLVSSIADLYRLDAALLSS------LDRMGERSANNLIEALTLSRQRSWARQLYG 514

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+++   +    +  +              S+  +  +G  +AQ++ +++
Sbjct: 515 LGIHHIGEVSAKAITAEFPDANSLMEAACT-------TPDSITAIYGIGTELAQSLQQWF 567

Query: 617 QNPRNICAVEALLKEVSPSIGRHE-------KNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            NP N   +  L  +                      +     V TGTL  + R +A+E 
Sbjct: 568 SNPANQQLLNDLRSQGFRFAVDENDHGHVGVAASDQHLTGLTFVLTGTLSTLSRSEAKER 627

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +   G  V+  +S+ TD ++ G+  GSKL KA  LG+ I++E     LL++
Sbjct: 628 IEASGGKVTGSVSKNTDYLVAGEEAGSKLTKATTLGITILDEAALHDLLKK 678


>gi|194333271|ref|YP_002015131.1| DNA ligase, NAD-dependent [Prosthecochloris aestuarii DSM 271]
 gi|254781391|sp|B4S4Y6|DNLJ_PROA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194311089|gb|ACF45484.1| DNA ligase, NAD-dependent [Prosthecochloris aestuarii DSM 271]
          Length = 675

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 228/716 (31%), Positives = 363/716 (50%), Gaps = 51/716 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A KE++ L  E++ H+  YY  ++P I D  +D    R  A+  AFPDL     P
Sbjct: 1   MQRKDALKEIARLRDELNRHNYRYYVLAQPEISDYAFDQELERLIALEKAFPDLV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE+      VTH  P  SL   +++E++ +F  R+ +   ++   +  F  E
Sbjct: 58  DSPSQRVGGEITKEFPTVTHRQPMRSLSNTYSLEEVEEFYARVLKLLPEEAGENPEFVAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP--------RVLSLNIPE 183
            K DG  +++ Y  G  V  A RG+G  G+D++  IR I ++P                 
Sbjct: 118 LKFDGVAVSLLYRDGFLVQGATRGNGVEGDDITPNIRTIGSVPLQLRGGAAMAAEQYGGR 177

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243
            IEVRGEV++ K+DF ALN+       + +ANPRNA +G L+  +  ++ R    FV   
Sbjct: 178 EIEVRGEVFMRKDDFAALNEGRPE--EEQFANPRNATAGTLKLQDSAEVARRKMMFVAYY 235

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               +  +    + LQ++  +GF          +F  I  +    +  R TL YDIDG+V
Sbjct: 236 LTDPQCRSMQHVQRLQRLEEMGFYTGGHYSTCRSFDEIRDFIGRWEVDRLTLQYDIDGIV 295

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K++  +   +LG  ++SPRW I++K+  +QA T L D+  Q+GR G +TPVA LE V +
Sbjct: 296 LKLNNPAFWDELGATSKSPRWAIAYKYPAEQAETVLNDVVFQVGRLGTITPVAELEAVRL 355

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  +TLHN D I+ L           D+R+GDRV+++++GE+IPKV+ ++   R  
Sbjct: 356 AGTTVKRSTLHNFDEIRRL-----------DVRIGDRVVIEKSGEIIPKVIRVVPGTRRE 404

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D+   + PS CP+C + ++   N        +  C    +C AQ   R+ HF SR+A +I
Sbjct: 405 DSSEIAIPSHCPVCGTALLHPENE------VSWYCPNSQSCPAQVKARILHFASRNAMDI 458

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           + LG+  ++    +      +    D++ L         ++ ++    D S  NL  +I 
Sbjct: 459 KSLGESLVEQLVHN----GLVADSGDLYRLTAD------EVSHLDRMADKSAMNLLKAIE 508

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K R    ER +++LGIRHVG   AR LA  Y S    A                L  V  
Sbjct: 509 KSRTREYERVLYALGIRHVGLATARELAAAYHSIDLLASA----------ALEELSCVAD 558

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQ 662
           +G +IAQ++ +F++NP  +  VE L            K  V+   E  K++FTGTL++  
Sbjct: 559 IGPVIAQSVHDFFRNPDALALVEKLRTAGLRLAASAPKALVNRNFEGMKVIFTGTLERHS 618

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R  A   V Q G      LSRKTD+++ G +PGSKL+KA +LGV+++ EE+F  +L
Sbjct: 619 RDDAAALVAQRGGKEVKSLSRKTDLVVAGKDPGSKLQKALKLGVRVIGEEEFEAML 674


>gi|126661836|ref|ZP_01732835.1| DNA ligase [Flavobacteria bacterium BAL38]
 gi|126625215|gb|EAZ95904.1| DNA ligase [Flavobacteria bacterium BAL38]
          Length = 663

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 232/701 (33%), Positives = 367/701 (52%), Gaps = 47/701 (6%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           + +L +E++ H+  YY    PII D E+D   ++   +    PD     D N P  ++GG
Sbjct: 7   IKNLREELNQHNYNYYVLDNPIISDFEFDQKLKQLQDLEIQNPDFF---DENSPTQRVGG 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
            +  +   + H     SL+  ++IEDL+ + TRI +      D  + +T E K DG  I+
Sbjct: 64  MVTKNFETIKHEYRMYSLDNSYSIEDLQDWETRIQKVLG---DVPLEYTCELKYDGASIS 120

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           I YE G+ V A  RGDG  G+DV+  I+ I  +P  L  + PE  ++RGE+ +    F  
Sbjct: 121 ISYENGRLVRAVTRGDGVQGDDVTNNIKTIKAVPIHLKGDFPEKFDIRGEIILPFAGFEK 180

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           +N E+I +G  PY+NPRN ASG L+  +  ++ +     +      + +  K Q+E LQK
Sbjct: 181 MNQELIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLDCLLYFVIGNNLPFKTQFEGLQK 240

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
            R  GF V N  + A   + +  + N     R  LPY+ DG+V KV+    Q++LG  A+
Sbjct: 241 ARDWGFKVPNQSKLAKNLNEVFEFINYWDKHRHDLPYETDGVVIKVNNIQHQEELGYTAK 300

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           SPRW +++KF  +Q +T+L  I  Q+GRTG +TPVA LEPV + G ++  A+LHN D I+
Sbjct: 301 SPRWAMAYKFKAEQVTTQLNSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIE 360

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
            L           DIR+GD V V++ GE+IPK++ +   +R   A+P  + + CP CQ+ 
Sbjct: 361 KL-----------DIRIGDDVFVEKGGEIIPKIIAV--AKRGNQAEPTKYITHCPECQTE 407

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           +VR          A H C     C  Q + R++HF++R A +I+GLG + +   F     
Sbjct: 408 LVRSEGE------ANHFCPNFYGCPPQIIGRIQHFITRKAMDIDGLGGETVALLFN---- 457

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
           A  +   AD++ L++ Q         +    + S  NL + I K + I  ER +++LGIR
Sbjct: 458 AGLVTNYADLYELKKEQIV------PLERMAEKSAENLINGIEKSKTIPFERVLYALGIR 511

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           +VG  +A+ LAK+Y S    A              + LI V  +GD IAQ++++F+ N  
Sbjct: 512 YVGETVAKKLAKHYKSIDAIANA----------SVMDLILVDEIGDKIAQSVMQFFDNQE 561

Query: 621 NICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
           NI  ++ L            +  VS +++ K  V +G  +   R + ++ +   G  V +
Sbjct: 562 NIRIIDKLKSFGVQLESDVEDVLVSEKLKGKTFVVSGVFEIYSRDELKKSIEDNGGKVGS 621

Query: 680 ILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            +S KTD +I GDN G SKLEKA QL + I++E  F  ++ 
Sbjct: 622 SISSKTDFVIAGDNMGPSKLEKANQLKIAIISEIDFKQMID 662


>gi|283458551|ref|YP_003363181.1| NAD-dependent DNA ligase [Rothia mucilaginosa DY-18]
 gi|283134596|dbj|BAI65361.1| NAD-dependent DNA ligase [Rothia mucilaginosa DY-18]
          Length = 747

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 239/733 (32%), Positives = 367/733 (50%), Gaps = 57/733 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  R E + L  +I      YY    P + D+EYDAL RR + I    P L  +   + P
Sbjct: 33  EALRAEYAELTDKIRAARRAYYNEDAPFLSDAEYDALYRRLEIIEAEHPHLIAN---DSP 89

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE   +   VTH     SLE +++ E+LR ++T+     +    ++  +  E KI
Sbjct: 90  TQEVGGEAIEAFAPVTHLQRMYSLEDVFSFEELRAWLTKTEESARNLTGSAPQWLTELKI 149

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193
           DG  + + Y  G  V AA RGDG +GEDV+  +R I +IP+ L+  N PE IE+RGEV+I
Sbjct: 150 DGLAVNLLYRNGTLVRAATRGDGTTGEDVTHNVRTIASIPQQLTGENHPEEIEIRGEVFI 209

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
           S  DF  LN+ MIA G+ P+ANPRNAA+G LR+ +     +R L+ +VHG+G  + +   
Sbjct: 210 SSADFEKLNESMIAAGKNPFANPRNAAAGSLRQKDAAVTASRPLSMYVHGIGSRTGLDIA 269

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            QYE    +   G PV+     A+    +  + N+    R +L ++IDG+V KV++F+ Q
Sbjct: 270 TQYETYDLLASWGLPVSPYSEIADNTEAVFDFINKYGEQRHSLVHEIDGIVIKVNDFATQ 329

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            QLG  +R PRW +++K+  ++  T+LLDI + +GRTG +TP   +EPV + G+ +  AT
Sbjct: 330 AQLGYTSRVPRWAVAYKYPPEEVHTKLLDIRVDVGRTGRVTPYGVMEPVFVSGSTVERAT 389

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+D +K            + + +GD V++++AG+VIP++V  +V  R    + F  PS
Sbjct: 390 LHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVAPVVALRDGTEREFVMPS 438

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S +         +     RCT   +C AQ  ER+ +  SR AF+IE LG +   
Sbjct: 439 ECPSCGSPLA-----PGKEGDVDLRCTNPRSCPAQLTERVYYAASRGAFDIEALGFEAAK 493

Query: 493 FFFKSEDP-AFSIRIPADIFTLQRRQ-------------------------QTSTTKIEN 526
                  P    +   A +F+L                               +      
Sbjct: 494 ALTSPATPDTPPLTTEAHLFSLNIEDLREVTIEREKKVKGVGTGKMERVPYFYTKPTKAR 553

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
                  +  NL+  + K +   L R + +L IRHVG   AR+LA  + S Q   +    
Sbjct: 554 PEPKPTKNTLNLFAELEKAKQQPLWRVLVALSIRHVGPTAARALAAEFGSMQAIREA--- 610

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
                  D   L  V  VG  IA +I+E++    +   V++            +++V   
Sbjct: 611 -------DRERLAAVDGVGTTIADSIIEWFAEDWHAEVVDSWAAAGVRMEDSRDESVERT 663

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +E   +V TGTL    R  A+E +   G   S  +S+KT  ++ G N GSKL+KAQQLG+
Sbjct: 664 LEGLTVVVTGTLNGYTRDGAKEAIISRGGKASGSVSKKTHFVVAGANAGSKLDKAQQLGL 723

Query: 707 KIMNEEQFLFLLQ 719
           KI++EE F  LL+
Sbjct: 724 KILDEEGFTALLE 736


>gi|154498024|ref|ZP_02036402.1| hypothetical protein BACCAP_02004 [Bacteroides capillosus ATCC
           29799]
 gi|150273014|gb|EDN00171.1| hypothetical protein BACCAP_02004 [Bacteroides capillosus ATCC
           29799]
          Length = 664

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/713 (31%), Positives = 368/713 (51%), Gaps = 50/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++  +E++ L  E++     YY    P + D ++D   RR + +  A PD       + 
Sbjct: 1   MDEI-QEIALLRAELNKASYEYYVLDNPTMSDYDFDHKLRRLEELEQAHPDQI---TEDS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG++     +VTH +P  SL+ ++++E+L  F+ R+        D    F +EPK
Sbjct: 57  PTRRVGGQVADGFQEVTHEVPLESLQDVFDLEELGDFVRRVQESL----DGKAEFDVEPK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  + + Y  G FV  A RGDG  GEDV+  ++ I ++P  L   IP++I VRGEVY+
Sbjct: 113 VDGLSVALEYRDGLFVRGATRGDGRVGEDVTENLKTIRSLPLRLPEPIPQLI-VRGEVYM 171

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252
           SK  F  LN+E    G   +ANPRNAA+G LR+L+P    +R L+  V  + K       
Sbjct: 172 SKKVFEQLNEEREIRGEALFANPRNAAAGSLRQLDPKVAASRKLDIVVFNIQKAEGAEFS 231

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E L  +    F V        +   I +    +   R   PYDIDG V K++  + +
Sbjct: 232 THTETLDYLERQQFRVIPRT-LCTSMEEIGTRIAAIGDGREEFPYDIDGAVVKLNSLADR 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K LG  A+ PRW  ++K+  +Q  + + DI +Q+GRTG+LTP A ++PV + G  +TNAT
Sbjct: 291 KILGSTAKFPRWAAAYKYPPEQKESVVEDIVVQVGRTGVLTPKAVVKPVRLAGTTVTNAT 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+D+I             +DIR+GD VLV++AGE+IP++V ++  +R     P+  P 
Sbjct: 351 LHNQDFI-----------TEKDIRIGDTVLVQKAGEIIPEIVSVVKEKRPEGTVPYHLPD 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C + V RD +       A  RCTG   C AQ L  L HF SRDA +I+GLG   ++
Sbjct: 400 HCPVCGAPVARDED------GAHIRCTGA-ECPAQLLRHLAHFASRDAMDIDGLGPAVME 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                   A  ++ PAD+++L          +  +   G  S  NL  +I++ +   L R
Sbjct: 453 ALIS----AGMVKTPADLYSLAPE------AVAQLDRMGKKSAENLAAAIDRSKGAGLAR 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F+ GIR VG +  + LA ++ +                        VP VG I A+++
Sbjct: 503 LLFAFGIRQVGQKAGKILASHFSTMDALLAATE----------EDFTAVPDVGAITAKSL 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            ++  + ++   ++AL +         +      +  K  V TG+L++  R +A   +  
Sbjct: 553 WDWLHSHQSQHLIQALREAGVVM-ENTDAPTGDALTGKTFVLTGSLERFTRAEAGAQIEA 611

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           LG  VS  +S+KT  ++ G+  GSKL+KAQ LG+ ++ EE+FL +L++   T+
Sbjct: 612 LGGKVSGSVSKKTSYVVAGEAAGSKLKKAQDLGIPVLTEEEFLIMLRELGATI 664


>gi|313637419|gb|EFS02883.1| DNA ligase, NAD-dependent [Listeria seeligeri FSL S4-171]
          Length = 671

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 246/711 (34%), Positives = 369/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLQIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N  DL  F  RI      K    I +  E KIDG 
Sbjct: 61  VGGEVLEGFQKVAHDTPMLSLANAFNKGDLADFDRRIRD----KVGEDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YEKGK+   A RGDG +GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYEKGKYKQGATRGDGTTGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+     +R L+ F++ +    E+      +
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVTTHSD 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R       + +Y +E    R+ L YDIDG+V K+++   Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCANLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNDLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTAKSPRWSIAYKFPAEEVPTKLLDIELNIGRTGVVTPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D           +   +DIR+GD VL+K+AG++IP+V+  I  ER  D +PF  P  CP 
Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERTGDEKPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CGSDLVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFT 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI + +  SLE+ +F 
Sbjct: 457 H----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEQSKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFETMDNLKLA----------DKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      ++ L +          K             K +V TG L+++ R+ A+  + 
Sbjct: 557 ANEEVHDLLDELKRANVNMTYTGPKLENMSEEELVFAGKTVVLTGKLEQLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +E   +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLIEYLPDEG 667


>gi|300771799|ref|ZP_07081670.1| NAD-dependent DNA ligase LigA [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761185|gb|EFK58010.1| NAD-dependent DNA ligase LigA [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 673

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 216/714 (30%), Positives = 369/714 (51%), Gaps = 48/714 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + +++++ L QE+++++  YY  ++ +I D ++D   +  +A+   +P  A   DP
Sbjct: 1   MSAVEIQEKIAQLTQELNHYNYQYYVLAQSLISDYDFDQKLKELEALESQYPQFA---DP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG++      V H  P LSL   ++ ++LR F  RI +       +   +  E
Sbjct: 58  NSPTRRVGGDITSRFNTVKHRWPMLSLGNTYSQDELRDFDQRIRKIIG----DDFEYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
            K DG  I++ Y+ GK V    RGDG  G++V+A +R I +IP  + + + PE  E+RGE
Sbjct: 114 LKFDGLSISLTYKDGKLVQGVTRGDGTQGDEVTANVRTIRSIPLTLKTKDYPEEFEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVHGLGKTSE 248
           +++ K+ FL LN E    G + YANPRN A+G ++  +  ++ R     F          
Sbjct: 174 IFMHKSAFLRLNKEREENGDQIYANPRNFAAGTIKLQDSAEVARRPLDCFLYFLYMDNRR 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 +E L+ +R  GF V +  R  +    + S+ N   + R  L Y+IDG+V KV++
Sbjct: 234 KHFSTHWESLEAVRKWGFHVCDHTRLCSNIDDVFSFINYWDTERHNLSYEIDGIVIKVND 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           ++ Q++LG  A++PRW  S+KF  ++  T L  I  Q+GRTG +TPVA L+PV++ G  +
Sbjct: 294 YAQQEELGFTAKNPRWATSYKFKAERVETILKSISYQVGRTGAVTPVANLQPVSLAGTTV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN + I  L           D+   D V V++ GE+IPKV+   + +R PDA PF
Sbjct: 354 KRASLHNANEIARL-----------DLHEQDTVYVEKGGEIIPKVIAANLEKRKPDAIPF 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P+ CP CQ+ +VR+         A H C     C  Q + +++HF+ R   +IEG+G 
Sbjct: 403 HYPTHCPECQTLLVREEGE------AVHYCPNEDGCPPQIIGKMQHFIGRKMMDIEGMGN 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++ FFK       IR   DI++L+  ++     ++ +  FG  S+ N+   I K +  
Sbjct: 457 ETIETFFKK----GLIRNVVDIYSLKEHEE----DLQKLERFGQKSIDNMLRGIEKSKEK 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
             E+ +F+LGIRHVG  IA+ LA Y+ +    AQ               +  V  +G  I
Sbjct: 509 PFEKVLFALGIRHVGETIAKKLALYFKNIDALAQA----------SVEEIASVQDIGGRI 558

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKA 666
           A+++ ++   P +   ++ L           ++ V   + +E K  + +G      R + 
Sbjct: 559 AESVHQYLNTPIHQQQIQKLKDYGLQFEIEEKEVVLAGNGLEGKTFLISGVFADFSREEL 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
              +   G  + + +S K + ++ GD  G SKL KA++L V I+NE++ L L+ 
Sbjct: 619 TALIESHGGKMVSSISAKLNYLVAGDKMGPSKLAKAEKLQVPIINEQELLVLIN 672


>gi|78185772|ref|YP_378206.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9902]
 gi|123743489|sp|Q3AUH7|DNLJ_SYNS9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78170066|gb|ABB27163.1| DNA ligase (NAD+) [Synechococcus sp. CC9902]
          Length = 680

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 208/711 (29%), Positives = 341/711 (47%), Gaps = 47/711 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +  + L   ++     YY    P + D+ YD L +    +    P L  +   + P  ++
Sbjct: 6   ERATELRNLLNTAAHAYYVLDTPTMEDAVYDRLYQELLELEQNTPSLKTA---DSPTQRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG        V H I  LSL+  +N +DL  +  R+ R   +   + +    E KIDG  
Sbjct: 63  GGAPAEGFTSVEHRIGLLSLDNAFNRDDLSAWNERLLRAIDRPLGSPLDLVSELKIDGNA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197
           + + Y  G    AA RGDG  GE+++A +R I  IP  L   N PE +E+RGE +I  N 
Sbjct: 123 LALSYRNGVLERAATRGDGQRGEEITANVRTISAIPLRLRLDNPPEWVEIRGEAFIPDNT 182

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N E  + G   +ANPRNA +G LR+L+P     R L+FF + L   ++     Q++
Sbjct: 183 FAEINAERESRGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPTQEQPASQWD 242

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +   GF VN           I  + +  +  R  LPY  DG+V K++   LQ + G
Sbjct: 243 ALTWLENAGFRVNPNRALCADLADINRFSDHWEQARHDLPYATDGVVVKLNNLVLQDEAG 302

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I+ KF  ++A +RLL + +QIGRTG++TPVA  EPV + G  ++ ATLHN 
Sbjct: 303 FTQKSPRWAIALKFPAEEAPSRLLRVVVQIGRTGVITPVAEFEPVALAGTSVSRATLHNA 362

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+ +GD ++V++AGE+IP+VV ++   R   A P   P  CP 
Sbjct: 363 DRIAEL-----------DLHLGDTIVVRKAGEIIPEVVRVLPELRPSSATPVQLPEHCPE 411

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR+ +    +           +C A     L+H+VS+ A +++GLG + ++    
Sbjct: 412 CGSNLVREGDEVATR-------CVNSSCPAILRGGLRHWVSKGALDVDGLGSKLIEQLVD 464

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +R  AD++ L            ++   G+ S  NL +++   R  S  R ++ 
Sbjct: 465 Q----GLVRSIADLYRLDAALL------GSLDRMGERSANNLIEALKLSRQRSWARQLYG 514

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+++   +    +  +               +  +  +G  +AQ++ +++
Sbjct: 515 LGIHHIGEVSAKAITAEFSDSNSLMEAACT-------APERITAIYGIGTELAQSLQQWF 567

Query: 617 QNPRNICAVEALLKEVSPSIGRH-------EKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            NP N   ++ L  +                      ++    V TGTL  + R +A+E 
Sbjct: 568 SNPANQHLLDDLRSQGFRFALDDNDPGRLGAAASEQHLKGLTFVLTGTLPTLSRSEAKER 627

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +   G  VS  +S+KTD ++ G+  GSKL KA  LG+KI++E++   +L+ 
Sbjct: 628 IETCGGKVSGSVSKKTDYLVAGEEAGSKLTKATTLGIKILDEDRLQAMLKD 678


>gi|323143662|ref|ZP_08078336.1| DNA ligase (NAD+) [Succinatimonas hippei YIT 12066]
 gi|322416595|gb|EFY07255.1| DNA ligase (NAD+) [Succinatimonas hippei YIT 12066]
          Length = 696

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 249/724 (34%), Positives = 389/724 (53%), Gaps = 57/724 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
              L   ++ +   YY    PI+ DSEYD L R+ + +  A P +     P+ P  ++GG
Sbjct: 8   YKDLVALLNRYAKAYYVDDDPIVTDSEYDRLYRQLEIMEQADPTII---SPDSPTRRVGG 64

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +   +   VTH +P LSL  I+++ +L  F  RI  F  ++    + +  EPK+DG  ++
Sbjct: 65  QALSAFASVTHRVPLLSLGDIFSVSELNDFNERICDFTHEE---KVEYCAEPKLDGLAVS 121

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-EVRGEVYISKNDFL 199
           + YE G  V AA RGDG  GED++   + I  IP  LS        +VRGEV++ ++ F 
Sbjct: 122 LIYENGLLVKAATRGDGRVGEDITENAKTIKAIPLRLSGENVPSYLDVRGEVFMPRDGFE 181

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
             N+     G K +ANPRNAA+G LR+L+      R L F  + +G+ S      QY+ L
Sbjct: 182 KWNERARQNGGKVFANPRNAAAGSLRQLDSKITAKRPLTFNAYYIGECSNELPDTQYDRL 241

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             ++  G PVN  +++     G+  +YN++   R  L YDIDG+V KV+   +Q+ +G  
Sbjct: 242 MSVKGWGIPVNPLIKKVYGIKGLSDFYNDILQKRPGLNYDIDGVVLKVNSIPVQEDMGFT 301

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           AR+PRW I++KF  ++  TRLLD++ Q+GRTG +TPVARL+PV +GGA ++NATLHNED 
Sbjct: 302 ARTPRWAIAYKFPPEEEITRLLDVEFQVGRTGAVTPVARLDPVYVGGATVSNATLHNEDE 361

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QPFSFPSFCPIC 437
           I+ L           ++ +GD V+V+RAG+VIP+V  +++  R  D  +P  FP+ CP C
Sbjct: 362 IRRL-----------NLMIGDYVIVRRAGDVIPQVAGVVLERREKDKVKPIVFPTECPEC 410

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S + R          A  RC+GGL C AQ  E + HFVSR+A +IEG G + ++    S
Sbjct: 411 GSLIERVKGE------AVARCSGGLVCPAQLRESVLHFVSRNAMDIEGFGDRIVEQLVLS 464

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS-----INKRRNISLER 552
                 ++  AD+++L      S    +         +  +        I K R I+L R
Sbjct: 465 ----GKVKSIADLYSLGENDLASLVLDDGSPERKPRLLGMITAKKLKAAIEKSRTIALNR 520

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI++LGIR VG   A +LA ++ +  +  +               L+++P +G ++A  I
Sbjct: 521 FIYALGIREVGESTALTLATHFETLNDIMRA----------SVEDLMKLPDIGVVVANHI 570

Query: 613 VEFYQNPRNICAVEALLKEVSPSI------------GRHEKNVSSEIENKKLVFTGTLQK 660
            +F++ P N+  +E L+      +               +   S  +  +  V TGTL  
Sbjct: 571 YDFFKEPHNLDIIERLVPSADIPLFSAGLTLLPCAQASVQTAQSMPLMGQTYVLTGTLSI 630

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + R+KA+  +  LGA VS  +S+KT  +I G +PGSKL KAQ+LGVK+M E+ F+ LL++
Sbjct: 631 MDRNKAKNLLQSLGAKVSGSVSKKTYAVIAGADPGSKLVKAQELGVKVMTEDDFIALLKE 690

Query: 721 YNTT 724
           +  +
Sbjct: 691 HGLS 694


>gi|302524940|ref|ZP_07277282.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4]
 gi|302433835|gb|EFL05651.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4]
          Length = 707

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 221/712 (31%), Positives = 342/712 (48%), Gaps = 43/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
               R+   +L +EI  H   YY    PII D ++DAL      I   +P L     P+ 
Sbjct: 11  PADVRERHGALAEEIRGHQFRYYVLDSPIISDGQFDALLGDLQKIEDEYPALV---TPDS 67

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +GG  +       H    LSL+ ++  E+   ++ R+ +           +  E K
Sbjct: 68  PTQNVGGTFSTEFTAHDHLERMLSLDNVFTAEEFLAWVERVEKEIGSA-----EYLAELK 122

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRG 189
           IDG  I + YE GK      RGDG +GEDV+  IR +  +P  L+       P+++EVRG
Sbjct: 123 IDGLAINLLYENGKLTRGLTRGDGRTGEDVTLNIRTLDQVPDRLTGTDEFPVPKLVEVRG 182

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EVY    DFL LN +M+  G+ PYANPRN A+G LR+ +P     R L    HGLGK   
Sbjct: 183 EVYFRVEDFLELNAKMVEAGKLPYANPRNTAAGSLRQKDPKITRERRLRLICHGLGKRDG 242

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q      +   G PV+   R   T   +  +       R    ++IDG+V KVD+
Sbjct: 243 FEPVTQSHAYDALAAWGLPVSPYTRVLRTGKELTEHIAYWGEHRHDAEHEIDGVVIKVDQ 302

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG  +R+PRW I++K+  ++A T LLDI + +GRTG +TP A  EPV + G+ +
Sbjct: 303 VALQRRLGTTSRAPRWAIAYKYPPEEAITMLLDIQVGVGRTGRVTPFAVTEPVKVAGSTV 362

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN++ +K            + + +GDR+++++AGEVIP+V+  +V+ R  D + F
Sbjct: 363 ARATLHNQEEVKR-----------KGVLIGDRIVIRKAGEVIPEVLGPVVDARTGDEREF 411

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C +++         +     RC     C AQ  ERL H   R AF+IE LG 
Sbjct: 412 VMPTECPECGTKLAYQ-----KEGDKDIRCPNSQFCPAQLRERLFHLAGRGAFDIEVLGY 466

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +           A  +    D+F L               G    +   L  +++  ++ 
Sbjct: 467 EAAVALLD----ARVVADEGDVFDLNEESLAEVELFRTKAGDLSANARKLLVNLDSAKDR 522

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L + I +L IRHVG   A++LA+ + S Q                   L  V  VG  I
Sbjct: 523 PLWKVIVALSIRHVGPTAAQALAREFGSLQRIEDTTE----------EELADVDGVGPTI 572

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A A+ E+++   +   VE   +         ++++   +E   +V TG+L    R +A+E
Sbjct: 573 AHAVQEWFEVDWHREIVEKWRRAGVRMEEERDESIPRNLEGLSIVVTGSLDGFSRDEAKE 632

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +   G   +  +S+KT  ++VGD PGSK +KA QL V +++E  F  LL++
Sbjct: 633 AIMARGGKAAGSVSKKTSFVVVGDAPGSKYDKAVQLKVPVLDENGFRALLER 684


>gi|296046593|gb|ADG86438.1| NAD-dependent DNA ligase [synthetic construct]
          Length = 689

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 247/712 (34%), Positives = 390/712 (54%), Gaps = 61/712 (8%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92
             YY   +P + D+EYD L      +    P+L      + P  K+GG+   S  +VTH 
Sbjct: 20  HEYYVLDQPSVPDAEYDRLMTALIDLEKTNPELKTI---DSPSQKVGGQALKSFTQVTHQ 76

Query: 93  IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152
           +P LSL+ +++++D   F+ R+       D+ +I F  EPK+DG  +++RYE G+ + AA
Sbjct: 77  LPMLSLDNVFSLDDFHAFVKRVKDRLN--DNQAIVFCAEPKLDGLAVSLRYEHGQLIQAA 134

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEVYISKNDFLALNDEMIAV 208
            RGDG  GE+++  IR I +IP  L      + P+I+EVRGEV++ K  F ALN      
Sbjct: 135 TRGDGSVGENITTNIRTIKSIPLKLMGTPGKDFPDIVEVRGEVFMPKASFDALNTLAKKR 194

Query: 209 GRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK--------------TSEIFAKG 253
           G K +ANPRNAA+G LR+L+      R L F+ + LG               T++ FA  
Sbjct: 195 GEKGFANPRNAAAGSLRQLDSKITAKRNLAFYAYSLGFVGKLSDGGAESTDLTNDFFANS 254

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E L +++ LG P+   VR   +     ++Y ++ + RS L Y+IDG V KVDE SLQK
Sbjct: 255 HHERLCQLKRLGLPMCPEVRLLESEQACDAFYQDILAKRSALSYEIDGTVLKVDEISLQK 314

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I++KF  ++  T + D++ Q+GRTG +TPVARL+PV +GG  ++NATL
Sbjct: 315 RLGFVARAPRWAIAYKFPAEEELTCVEDVEFQVGRTGAITPVARLKPVFVGGVTVSNATL 374

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+D I  L            ++V D V+++RAG+VIP++V +++++R  +A    FP+ 
Sbjct: 375 HNQDEITRL-----------GLKVNDFVVIRRAGDVIPQIVSVVLDKRPDNAVDIVFPTS 423

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S V +          A  RCT GL C+AQ+ E +KHF SR A +++GLG + ++ 
Sbjct: 424 CPVCDSAVAKPEGE------AVLRCTAGLFCAAQRKEAIKHFASRKAHDVDGLGDKLVEQ 477

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               +     I  PAD+F L   Q ++      I   G  S TNL + + + ++ +L +F
Sbjct: 478 LVDEK----LINTPADLFKLTEIQVST------IDRMGKKSATNLINGLEQAKSTTLAKF 527

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I+ LGIR VG   A +LA ++ +                     L  V  VG+++A+ I+
Sbjct: 528 IYGLGIREVGEATAANLANHFYTLAAIESA----------SLEDLQNVSDVGEVVAKNII 577

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            F++   N+  V  L + +       +      +  +  V TGTL ++ R +A+  +  L
Sbjct: 578 NFFKEEHNLAIVSGLSEVMHWPTIEIKSAEELPLAEQIFVLTGTLTQMGRTEAKTALQSL 637

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           GA VS  +S+ T  ++ GD  GSKL KAQ LG+ ++ E+  + LL ++  T+
Sbjct: 638 GAKVSGSVSKNTHFVVAGDKAGSKLTKAQDLGISVLTEDGLVALLAEHGITI 689


>gi|148652285|ref|YP_001279378.1| DNA ligase [Psychrobacter sp. PRwf-1]
 gi|190359276|sp|A5WCN7|DNLJ_PSYWF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148571369|gb|ABQ93428.1| DNA ligase, NAD-dependent [Psychrobacter sp. PRwf-1]
          Length = 686

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 241/709 (33%), Positives = 372/709 (52%), Gaps = 45/709 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           ++   ++ +L  ++  H++ YY   +P I D+EYD L+     +   +P+L +   P+ P
Sbjct: 15  QEVIAKMRTLIAQVRKHNNAYYVMDEPTISDNEYDQLRLSLIELEERYPELTQ---PDSP 71

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +G     S  +V H I  LSL  I+N +DL++F+ R+       D N   + +E K+
Sbjct: 72  TASVGDNPLPSFSQVQHDIAMLSLGNIFNYQDLQEFMRRVNDRLSDADRNP-EYEIEMKL 130

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193
           DG  ++++Y  G+FV    RGDG  GED++  ++ I  IP  + +    +++EVRGEV +
Sbjct: 131 DGLAVSLKYHNGQFVRGVTRGDGQMGEDITQNVKTINNIPLVIEAAQDIDVLEVRGEVLM 190

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAK 252
            K  F  LN      G K +ANPRNAA+G LR+L+P         F+ + + +       
Sbjct: 191 PKAGFKRLNRLAQENGDKTFANPRNAAAGSLRQLDPAVAASRPLAFYAYSVNQGLPEAIT 250

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   L  ++ LGF   +   +  T   +  YY  M   R+ L ++IDG+V KVD+ +LQ
Sbjct: 251 LQSAALTWLKQLGF-TVSDFERVKTAQQVQDYYESMIQKRADLAFEIDGMVIKVDDLTLQ 309

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            QLG  +R PRW  ++KF  +   T L  I+ Q+GRTG LTPV +LEPV +GG  ++N T
Sbjct: 310 SQLGALSREPRWATAYKFPAETVMTTLNSIEWQVGRTGQLTPVGKLEPVQVGGVTVSNVT 369

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   I+ L           D+R GD V V RAG+VIPKV  +  + R       + P+
Sbjct: 370 LHNFGEIQRL-----------DVRAGDTVSVHRAGDVIPKVTRVWHDLRPEGTSAVTLPT 418

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S VV           A  RCTG L C AQQ E L HFVSR A +I+GLG++ L 
Sbjct: 419 HCPVCDSPVVLPEGE------ALARCTGELFCPAQQQEALIHFVSRKAMDIDGLGERWLI 472

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF+       ++  ADI+ L         ++  +   G+ SV+N+  +I + +  +L R
Sbjct: 473 SFFEH----GIVKTVADIYHLNEH----ADELVTLEKLGEKSVSNMLRAIEESKKTTLAR 524

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI++LGIR VG   A++LA+Y+                      +L  VP VG I A+ I
Sbjct: 525 FIYALGIRGVGETTAQNLAQYFGDLPELMGA----------SIDALEAVPDVGHITAELI 574

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTL--QKIQRHKAQEY 669
             F++   NI  + AL +         ++ + +  +E +  V TGTL    + R  A+ +
Sbjct: 575 YNFFRAEHNIEVINALQQAGVYWDKVEQQALDNLPLEGQTWVITGTLVASGMSRDDAKAH 634

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  LGA VS  +S KT  ++ G+  GSKL KAQ LGV+++ E++FL ++
Sbjct: 635 LQALGAKVSGSVSAKTSALLAGEKAGSKLTKAQSLGVRVVLEDEFLKMI 683


>gi|71281008|ref|YP_270140.1| DNA ligase, NAD-dependent [Colwellia psychrerythraea 34H]
 gi|123774873|sp|Q47YI0|DNLJ_COLP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71146748|gb|AAZ27221.1| DNA ligase, NAD-dependent [Colwellia psychrerythraea 34H]
          Length = 689

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 247/712 (34%), Positives = 390/712 (54%), Gaps = 61/712 (8%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92
             YY   +P + D+EYD L      +    P+L      + P  K+GG+   S  +VTH 
Sbjct: 20  HEYYVLDQPSVPDAEYDRLMTALIDLEKTNPELKTI---DSPSQKVGGQALKSFTQVTHQ 76

Query: 93  IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152
           +P LSL+ +++++D   F+ R+       D+ +I F  EPK+DG  +++RYE G+ + AA
Sbjct: 77  LPMLSLDNVFSLDDFHAFVKRVKDRLN--DNQAIVFCAEPKLDGLAVSLRYEHGQLIQAA 134

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEVYISKNDFLALNDEMIAV 208
            RGDG  GE+++  IR I +IP  L      + P+I+EVRGEV++ K  F ALN      
Sbjct: 135 TRGDGSVGENITTNIRTIKSIPLKLMGTPGKDFPDIVEVRGEVFMPKASFDALNTLAKKR 194

Query: 209 GRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK--------------TSEIFAKG 253
           G K +ANPRNAA+G LR+L+      R L F+ + LG               T++ FA  
Sbjct: 195 GEKGFANPRNAAAGSLRQLDSKITAKRNLAFYAYSLGFVGKLSDGGAESTDLTNDFFANS 254

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E L +++ LG P+   VR   +     ++Y ++ + RS L Y+IDG V KVDE SLQK
Sbjct: 255 HHERLCQLKRLGLPMCPEVRLLESEQACDAFYQDILAKRSALSYEIDGTVLKVDEISLQK 314

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I++KF  ++  T + D++ Q+GRTG +TPVARL+PV +GG  ++NATL
Sbjct: 315 RLGFVARAPRWAIAYKFPAEEELTCVEDVEFQVGRTGAITPVARLKPVFVGGVTVSNATL 374

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+D I  L            ++V D V+++RAG+VIP++V +++++R  +A    FP+ 
Sbjct: 375 HNQDEITRL-----------GLKVNDFVVIRRAGDVIPQIVSVVLDKRPDNAVDIVFPTS 423

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S V +          A  RCT GL C+AQ+ E +KHF SR A +++GLG + ++ 
Sbjct: 424 CPVCDSAVAKPEGE------AVLRCTAGLFCAAQRKEAIKHFASRKAHDVDGLGDKLVEQ 477

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               +     I  PAD+F L   Q ++      I   G  S TNL + + + ++ +L +F
Sbjct: 478 LVDEK----LINTPADLFKLTEIQVST------IDRMGKKSATNLINGLEQAKSTTLAKF 527

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I+ LGIR VG   A +LA ++ +                     L  V  VG+++A+ I+
Sbjct: 528 IYGLGIREVGEATAANLANHFYTLAAIESA----------SLEDLQNVSDVGEVVAKNII 577

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            F++   N+  V  L + +       +      +  +  V TGTL ++ R +A+  +  L
Sbjct: 578 NFFKEEHNLAIVSGLSEVMHWPTIEIKSAEELPLAEQIFVLTGTLTQMGRTEAKTALQSL 637

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           GA VS  +S+ T  ++ GD  GSKL KAQ LG+ ++ E+  + LL ++  T+
Sbjct: 638 GAKVSGSVSKNTHFVVAGDKAGSKLTKAQDLGISVLTEDGLVALLAEHGITI 689


>gi|332529208|ref|ZP_08405172.1| DNA ligase [Hylemonella gracilis ATCC 19624]
 gi|332041431|gb|EGI77793.1| DNA ligase [Hylemonella gracilis ATCC 19624]
          Length = 738

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 246/744 (33%), Positives = 384/744 (51%), Gaps = 91/744 (12%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           ++ +H   YY    P I D+EYD L +   AI  A P+L     P+ P  ++ G++   L
Sbjct: 31  QLHHHAHRYYVLDAPEIPDAEYDRLFQELQAIEAAHPEL---RTPDSPTQRVIGQVLDGL 87

Query: 87  FKVTHSIPTLSLEKIWN--IEDLRKFITRIYRFWQKKDD-NSIFFTLEPKIDGTMITIRY 143
             V H++P LS++   +   E  R F TR+ +     +  + + +  E K DG  I +RY
Sbjct: 88  LPVRHAVPMLSIDTETDTTPEGARAFDTRVRKALGLGEGASPVEYAAELKFDGLAINLRY 147

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIP----------------------------- 174
           E+G  V AA RGDG +GEDV+  IR I  IP                             
Sbjct: 148 ERGVLVQAATRGDGETGEDVTQNIRTINQIPLRLLAPTLPAARGSLPPSPSNAQDALEPG 207

Query: 175 ----------RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV------GRKPYANPRN 218
                       ++   PE++EVRGEVY+ ++DF ALN+           G K + NPRN
Sbjct: 208 VRFALGLPGGETMTSWPPEVLEVRGEVYMRRDDFEALNERQREKIAAGAKGEKTFINPRN 267

Query: 219 AASGILRRLNPTDI-TRYLNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQAN 276
            A+G +R+L+P     R L+F+ +GLG+           +++     +G PV        
Sbjct: 268 TAAGAVRQLDPAMAAQRPLSFYAYGLGEARGWTLPATHGQVMDAFVAMGLPVCEHRALGA 327

Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336
               +V ++  M ++R +LP+DIDG+VYKV+  +LQ+QLG ++R PRW ++HK+  ++  
Sbjct: 328 GAEALVDFHARMGALRDSLPFDIDGVVYKVNSLALQQQLGFKSREPRWAVAHKYPAQEML 387

Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396
           T +  I++Q+GRTG LTPVA+L PV +GG  +TNATLHNE   +            +D+R
Sbjct: 388 TTVQAIEVQVGRTGKLTPVAKLAPVFVGGVTVTNATLHNELEARR-----------KDVR 436

Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456
           VGD V+V+RAG+VIP+VV ++ ++R P A  F+ P+ CP+C S  VR+         A H
Sbjct: 437 VGDTVIVRRAGDVIPEVVGVLPDKRPPGAPEFTMPTSCPVCGSAAVREEGE------ADH 490

Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516
           RCTGGL CSAQ+ + L HF  R A +IEGLG + +D     E     ++   D++ L   
Sbjct: 491 RCTGGLFCSAQRKQALLHFAQRRAMDIEGLGDKLVDQLVDGE----VVKTLPDLYRL--- 543

Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                T +  +    + S  N+ D++ K +  +L RF++ LGIRHVG   A+ LA+++  
Sbjct: 544 ---GLTSLAALERMAEKSAQNIVDALQKSKQTTLPRFLYGLGIRHVGESTAKDLARHFGQ 600

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
                               +L+  P VG ++AQ+I  F++   N   VE L        
Sbjct: 601 LDAIMDA----------GVEALMEAPDVGPVVAQSIRTFFEQAHNREVVEQLRACGVQWA 650

Query: 637 GRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
                  +   +  +  V TGTL  + R +A+E +   GA V+  +S+KT  ++ G+  G
Sbjct: 651 EGEPAPRALLPLAGQTFVLTGTLPTLSREEAKEMLEAAGAKVAGSVSKKTSYVVAGEEAG 710

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SKL+KA++LGV +++E +   LL+
Sbjct: 711 SKLDKARELGVPVIDEAKMQALLK 734


>gi|288801242|ref|ZP_06406697.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288331853|gb|EFC70336.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 666

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 225/712 (31%), Positives = 360/712 (50%), Gaps = 50/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ EQ  + +  L +E+  H+  YY  + P I D  +DAL     ++ +A P+     D 
Sbjct: 1   MTTEQ--ERIIELRKELHQHNYNYYVLNAPQIDDFTFDALLHELQSLENAHPE---MYDA 55

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++G ++  S  +V H  P LSL   +N +++  F   + +F             E
Sbjct: 56  NSPTQRVGSDLQESFEQVVHVYPMLSLSNTYNKQEVADFYNTVSKFLN---GEEFEICCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
            K DG  I++RYE GK V A  RGDG  G+DV+A ++ I TIP VL  N  P + E+RGE
Sbjct: 113 LKYDGLSISLRYEDGKLVRAVTRGDGTRGDDVTANVKTIKTIPLVLQGNDYPAVFEMRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           V +    F  LN+E        +ANPRNAASG L+ LNP  + +             +I 
Sbjct: 173 VLMPWKVFDKLNEERRQQEEPLFANPRNAASGTLKSLNPVLVAKRSLDAYLYYLLGEDIN 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             G +E L+  +  G  +  G+R+ ++   I ++ +     R  LP   DG+V KV+   
Sbjct: 233 IDGHFERLEAAKRWGVKIGEGMRKVSSLEDIYAFIDYWDVERKNLPVATDGIVLKVNSLK 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ +G  A++PRW I++KF  ++  T+L  +  Q+GRTG +TPVA +EPV + G ++  
Sbjct: 293 QQQSMGFTAKNPRWAIAYKFKAERELTKLESVSYQVGRTGTITPVANMEPVLLAGTVVKR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATL+NED+IK             D+ +GD V V++ GE+IPK+V + +++R    QP  F
Sbjct: 353 ATLNNEDFIKSF-----------DLHIGDYVYVEKGGEIIPKIVGVELSKRTEGMQPIEF 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
              CP C +++VR          AA+ C   + C  Q   +++HF++R A NI+ LG + 
Sbjct: 402 IKTCPECGTQLVRYEG------QAAYYCPNDMGCPPQIKGKIEHFIARKAMNIDSLGPET 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D ++        I+  AD++ L               G    S   + D+I K + +  
Sbjct: 456 IDSYYNK----GLIKDVADLYCLAIDDINEG-------GAHQKSAKKVIDAIEKSKQVPF 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +R +F+LGIR VG   AR LA+ +    +                  L+ V  VGDIIA 
Sbjct: 505 DRVLFALGIRFVGETSARLLARKFNDINSLRNATAA----------QLLEVEGVGDIIAT 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           ++V F+ + +NI  +E L             E    + +E K +V +G      R + + 
Sbjct: 555 SVVTFFSDEKNIALIERLESYGLQMAMPVMDEGPKGNVLEGKTIVISGIFTHHSRDEYKA 614

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            + QLG   +  +S KT  ++ GDN G SKL+KA+ LGVKI++E++FL +++
Sbjct: 615 MIEQLGGKNTGSISAKTSFVLAGDNMGPSKLQKAESLGVKILSEDEFLEMIK 666


>gi|254882009|ref|ZP_05254719.1| polydeoxyribonucleotide synthase [Bacteroides sp. 4_3_47FAA]
 gi|254834802|gb|EET15111.1| polydeoxyribonucleotide synthase [Bacteroides sp. 4_3_47FAA]
          Length = 665

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 231/705 (32%), Positives = 356/705 (50%), Gaps = 48/705 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L +E+  H+  YY  + P I D E+D L R    +    P+     D N P  ++
Sbjct: 5   ERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G ++N +  +V H  P LSL   ++  ++ +F  R+ +      +       E K DGT 
Sbjct: 62  GSDINKNFTQVVHKYPMLSLANTYSETEVTEFYDRVKKSL----NEDFEICCEMKYDGTS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197
           I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL     PE  E+RGE+ +    
Sbjct: 118 ISLTYENGKLVRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPETFEIRGEILMPWVV 177

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  LN E  A     +ANPRNAASG L+  N   +                +   G YE 
Sbjct: 178 FEELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPCDGHYEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L++    GF +++  R+  T   +  +       R  LP   DG+V KV+    Q+ LG 
Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++KF  +QA TRL  +  Q+GRTG +TPVA L+P+ + G ++  A+LHN D
Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPIQLSGTVVKRASLHNAD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+GL           D+ +GD V V++ GE+IPK+V +  + R        F + CP C
Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKDARIMIGDKVKFITHCPEC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S++VR          AA+ CT   AC  Q   +++HF+SR A NI+GLG + +D F++ 
Sbjct: 407 GSKLVRYEGE------AAYYCTNDAACPPQIKGKIEHFISRRAMNIDGLGPETVDQFYQE 460

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 IR  AD++TL       T+ I N+   G+ S  N+   I + + +  ER +F+L
Sbjct: 461 ----GLIRDVADLYTL------KTSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG  +A+ +AK + S    A               +LI V  +G+ IAQ+I+ ++ 
Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADA----------SLDNLIHVDEIGEKIAQSILLYFA 560

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           NP+N   +E L           E       ++  + +V +G      R + +E + + G 
Sbjct: 561 NPKNRDIIERLRVAGVRLEADEEDTSEHTDKLAGESIVISGVFAHHSRDEYKELIEKHGG 620

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
                +S KT  I+ GDN G SKLEKAQ+LGV I++EE+FL +++
Sbjct: 621 KNVGSISSKTSFILAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665


>gi|153003607|ref|YP_001377932.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. Fw109-5]
 gi|166215389|sp|A7H8A2|DNLJ_ANADF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|152027180|gb|ABS24948.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. Fw109-5]
          Length = 699

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 236/730 (32%), Positives = 367/730 (50%), Gaps = 58/730 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
             + A    + L   I   D  YY   +P++ D+EYD L R    I  A P+LA S   +
Sbjct: 6   DRDSAETRAAELRARILDADHAYYVLDRPVLADAEYDRLVRELAEIEAAHPELATS---D 62

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++ G  +    +V H  P LSL  I +  +L +F  R++R      D  + +  EP
Sbjct: 63  SPTQRVSGAPSERFERVVHREPMLSLGNIQSDGELDEFDARVHRLLGLAGDVQVGYVAEP 122

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRA------IPTIPRVLSLNIPEIIE 186
           K+DG  + + YE G+ V  + RGDG +GEDV+A +R          +P  L+  +P  +E
Sbjct: 123 KLDGLAVELVYEGGRLVQGSTRGDGVNGEDVTANLRTVGRTRANRGVPERLAGEVPPRVE 182

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH---- 241
           VRGEV + K  F A+N +++  G +P+ANPRNAA+G LR+L+      R L+F  +    
Sbjct: 183 VRGEVLLFKEHFEAMNRQILRAGDEPFANPRNAAAGSLRQLDWRVTARRPLSFIAYEALV 242

Query: 242 -----GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
                G  +      +   E L+ +   GF  N    +      + +Y + M   R  LP
Sbjct: 243 PGAEPGGARAGPWAWRTHAEKLEALARWGFETNAENERCEGIAAVKAYRDRMAERRFALP 302

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           YD DG+V KVD+   +++LG  ++ PRW ++ K+  ++ +TR+  I   +GRTGILTPV 
Sbjct: 303 YDTDGVVVKVDDLDWRRRLGAASKFPRWAVAFKYPPQEEATRIRRIWASVGRTGILTPVV 362

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
             EPV + GA+++ ATLHNED ++            +D+  GD +LV+RAGEVIP+VV  
Sbjct: 363 DFEPVRLSGAMVSRATLHNEDEMRR-----------KDVLEGDWILVRRAGEVIPEVVMP 411

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           +   R  + +PF+FP+ CPIC ++VVR+   K       +RCTG  AC AQ + RL HF 
Sbjct: 412 LKERRTGEERPFAFPAECPICGAKVVREEGEK------VYRCTGA-ACPAQLVGRLTHFA 464

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF------ 530
            R A +I+GLG +      +       ++  AD++ +                       
Sbjct: 465 QRRAMDIDGLGDKLALGLVER----GLVKDFADLYAVPFPAWQELFSRPRKEERDAKAEL 520

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
              S  N+ D++ + +  +L R +F+LGI  VG   A +LA+++     F          
Sbjct: 521 PQKSAQNMVDALERSKATTLRRLLFALGIPQVGEATAATLARHFGELARFMDASE----- 575

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
                 +L+ V  VG   A+ I  + + P+N   VE LL            +       K
Sbjct: 576 -----DALLAVRDVGPETAREIRAWTEEPQNRRVVERLLAAGVR-PAPETVDAGGPFAGK 629

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG L  + R  A+  + + G  VS  +SRKTD+++ G   GSKLEKAQ LGV+++ 
Sbjct: 630 TVVLTGGLAALSRDDAKAEIERRGGKVSGSVSRKTDLVVAGAEAGSKLEKAQALGVRVVG 689

Query: 711 EEQFLFLLQQ 720
           EE+FL +L++
Sbjct: 690 EEEFLRMLEE 699


>gi|158334366|ref|YP_001515538.1| NAD-dependent DNA ligase LigA [Acaryochloris marina MBIC11017]
 gi|190359221|sp|B0C308|DNLJ_ACAM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|158304607|gb|ABW26224.1| DNA ligase, NAD-dependent [Acaryochloris marina MBIC11017]
          Length = 675

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 211/709 (29%), Positives = 341/709 (48%), Gaps = 49/709 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L Q +      YY    P++ D+ YD L      +   +P L     P+ P  +
Sbjct: 9   QARVQELRQLLQKASYAYYGLDAPLMEDAVYDQLYHELVDLEAQYPQLI---TPDSPTQR 65

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G         V H IP  SLE  ++  D+  +  R ++           +  E KIDG+
Sbjct: 66  VGERPATQFVSVQHRIPLYSLENAFDRGDMDTWDERWHKLVPNLSQEPG-YVTELKIDGS 124

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKN 196
            + + YE G  V    RGDG  GE+++  +R I +IP      + PE +EVRGE ++   
Sbjct: 125 ALALTYENGLLVRGTTRGDGTKGEEITQNVRTIRSIPLRLNIEHPPEWLEVRGEAFLGLQ 184

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF----A 251
            F  +N + I  G   +ANPRNAA+G LR+L+      R L+FF + +  +         
Sbjct: 185 VFDQINRDRIQAGEAEFANPRNAAAGTLRQLDSKVVAERKLDFFAYTIHISGPTDDLALP 244

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           + Q++ L+ ++ LGF VN   RQ  +   + +YY++    R  LPY  DG+V K+D   +
Sbjct: 245 QTQWQALETLKQLGFRVNPNRRQCESLAEVQTYYDDWSLKRLDLPYLTDGVVIKLDNLGV 304

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG   + PRW I+ K+  ++A+TR+  I + +GRTG LTPVA  +PV + G  ++ A
Sbjct: 305 QDELGFTQKFPRWAIAWKYPPEEAATRIEQITVNVGRTGALTPVAEFKPVQLAGTTVSRA 364

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L           DI +GD V+V++AGE+IP+V+ ++   R   AQP+  P
Sbjct: 365 TLHNRDRISEL-----------DIHIGDTVVVRKAGEIIPEVLRVLPELRPAGAQPYQMP 413

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C    V+          A  RC    +C A     L H+VSR A +I+GLG++ +
Sbjct: 414 TACPSCGQPAVQLETE------AVTRCVNA-SCPAILRGSLIHWVSRGALDIDGLGEKIV 466

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                S+     ++  AD++ L   +         +   G      +  +I   +     
Sbjct: 467 GQLTDSQ----MVQSVADLYELNEDKLMD------LDRMGTKLARKIVSAIATSKQQPWH 516

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LGIRHVG+  A+ L + Y +                 D   +  +  +G  IAQ+
Sbjct: 517 RVLYGLGIRHVGSVNAQLLTENYPTVDALMA----------VDGDKIATIHGIGPEIAQS 566

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYV 670
           + E++Q P N   ++ L            ++     +  K  V TGTL  ++R +A++ +
Sbjct: 567 VYEWFQTPTNQTLIQRLQSAGLQFEAIVSESTQPQTLSGKTFVITGTLPTLKRDQAKQMI 626

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G  V+  +S+ T  ++VG + GSKL KAQ LG+  ++E   L LLQ
Sbjct: 627 QDAGGKVTGSVSKNTSYVVVGADAGSKLTKAQSLGINQLSEADLLALLQ 675


>gi|87308785|ref|ZP_01090924.1| DNA ligase [Blastopirellula marina DSM 3645]
 gi|87288496|gb|EAQ80391.1| DNA ligase [Blastopirellula marina DSM 3645]
          Length = 679

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 223/714 (31%), Positives = 369/714 (51%), Gaps = 51/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   ++E+  L  EI  HD  YY  +K  I D EYD L  R   +    P L     P+ 
Sbjct: 1   MAAVQEEIDHLRAEIRRHDRMYYVEAKTEISDLEYDQLLNRLKHLEAENPQLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  +IG +    L +V H +P LS++  +++E+L+ +  RI +      +  I + +E K
Sbjct: 58  PTQRIGDQPVEHLNQVAHRVPMLSIDNTYSLEELKAYGERIQKLL---PEEKIEWVVELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           IDG   ++ YE G+ V    RG+G  G+D++  IR I  IP  L+ +  P ++EVRGE+Y
Sbjct: 115 IDGVAASLLYEAGRLVRGVTRGNGQVGDDITHNIRTIKDIPLQLAGDDVPPVLEVRGEIY 174

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251
           ++ ++   +N  + A G   Y N RN  +G +R L+P     R L  F HG+G    + +
Sbjct: 175 MTNDELSRINKRLAAAGEALYKNTRNVTAGSIRLLDPRICAERNLRMFTHGVGYAEGLNS 234

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           +   + L +++  G      V     F   V++   +      LP+++DGLV KV+ F  
Sbjct: 235 ESHIDFLNELKQYGLSPTPKVEAFADFDAAVAHCETLIETLQDLPFEVDGLVLKVNRFEQ 294

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG   +SPRW+I++KF + +A T+L DI +Q+G+TG +TP+A LEPV + G  ++ +
Sbjct: 295 RERLGSTTKSPRWIIAYKFEKYEAITKLNDIRVQVGKTGTITPIAELEPVELAGTTVSRS 354

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN + I+ L           DIR+GD V+V++AG++IP +V + ++ER  +   F FP
Sbjct: 355 SLHNAEQIERL-----------DIRIGDVVVVEKAGKIIPHIVRVEMHERKTELPKFEFP 403

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CPIC + +V+D            RC     C AQ  ER+ +F SR+A ++EGLG + +
Sbjct: 404 TQCPICHTTLVKDEG------GVYIRCPNRETCPAQLKERIGYFASRNAMDVEGLGDKLV 457

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D     E     ++   DI+ L         ++  +   G  S  NL  SI   ++  L 
Sbjct: 458 DQLVVDE----LVKSYGDIYRLTVE------ELAQLERMGKKSSENLIASIAASKDRGLA 507

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +  L IRHVG  +A+ LA+++++                     +  V  +G IIA +
Sbjct: 508 RLLNGLSIRHVGNRVAQLLARHFVTVDALLSASE----------EEIAAVNEIGPIIAAS 557

Query: 612 IVEFYQNPRNICAVEALLKEV------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +  F+ +      +E L +         P +   ++     +  K LV TGTL K  R +
Sbjct: 558 VHHFFASEFGQQTIEDLRQLGLKLTEDVPDVVASDETGGGPLTGKTLVVTGTLVKYGRDE 617

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            QE + + G   ++ +S+KTD ++ G+  GSKL KA+QLGVK+++E +F  LL 
Sbjct: 618 IQELIEKHGGKATSSVSKKTDYVVAGEKAGSKLAKARQLGVKVLSEAEFEVLLA 671


>gi|254465633|ref|ZP_05079044.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium Y4I]
 gi|206686541|gb|EDZ47023.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium Y4I]
          Length = 750

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 298/763 (39%), Positives = 440/763 (57%), Gaps = 59/763 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M +     + AL+ E AR E  +LE ++   D  Y+Q   P I D+EYD+LK+R  A+A 
Sbjct: 1   MAENSEKDVTALTAEDARAEFLALEDQLRAADLAYHQADAPEISDAEYDSLKQRYRALAE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           AFPDLA +      L+ +G        K+TH++  LSL   +  ED+  F   + ++   
Sbjct: 61  AFPDLADAATH---LDAVGAPAASGFGKITHAVRMLSLGNAFAEEDVTDFDRSVRKYLGL 117

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             + ++ +T EPKIDG  +++RYE+GK V AA RGDG  GE+V+A  R I  IP+ L+  
Sbjct: 118 GGEAALGYTAEPKIDGLSLSLRYEQGKLVQAATRGDGSVGENVTANARTISDIPQHLTGA 177

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            PE++EVRGEVY+S  DF ALN      G K +ANPRNAA+G LR+L+      R L FF
Sbjct: 178 -PEVLEVRGEVYMSHADFEALNARHAERGGKIFANPRNAAAGSLRQLDAEITRARPLRFF 236

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ S   A+ Q E +++++ LGF  N   R   +   ++ +Y  ++  R+TL YDI
Sbjct: 237 AYSWGELSAPLAETQMEAIERLQSLGFQTNPLTRLCTSVADMIDHYRSIEEQRATLGYDI 296

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKV++ +LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL 
Sbjct: 297 DGVVYKVNDLALQGRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLT 356

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG +++NATLHNEDYI+G D+ G+ +RGG+DIR+GD V + RAG+VIPKV D+ ++
Sbjct: 357 PVTVGGVVVSNATLHNEDYIQGRDSKGEEIRGGKDIRIGDWVQIYRAGDVIPKVADVDLS 416

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R   A+P+ FP  CP C S   R+         A  RC+GGL C AQ +E+LKHFVSR 
Sbjct: 417 KRPQHAEPYQFPHTCPECGSPAEREEG------DAVRRCSGGLICPAQAVEKLKHFVSRA 470

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           AF+IEGLG +Q++ F         I+ PADIF LQ    +   +++N  G+G+ S  NL+
Sbjct: 471 AFDIEGLGAKQVEQFHSD----GWIKEPADIFDLQANYGSGLQQLKNREGWGEKSADNLF 526

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ----------------- 582
            +I ++R I L + IF+LGIRH G    R LA +Y  +Q  A                  
Sbjct: 527 AAIEEKRTIPLAKLIFALGIRHAGEVAGRDLALHYRDWQGMAAALDAARPAALAHRAADE 586

Query: 583 --------------------------EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
                                         + A     W  LI V  +G ++  ++ + +
Sbjct: 587 AEEAERQSAAEEGRRARISETRAAAIAACEVPAEAASAWADLIGVDGIGAVLGLSLSDAF 646

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            NP    A++ L+ +++  +        S +  K +VFTGTL+K+ R +A+     LGA 
Sbjct: 647 ANPEERAAIDRLVAKLTV-VPPDAPAADSPVAGKTVVFTGTLEKMTRAEAKARAEALGAK 705

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           VS  +S+KTDI++ G   GSK +KA +LG++ ++E+ +L L+ 
Sbjct: 706 VSGSVSKKTDILVAGPGAGSKAKKAAELGIQTLDEDGWLELIA 748


>gi|313893283|ref|ZP_07826858.1| DNA ligase (NAD+) [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442179|gb|EFR60596.1| DNA ligase (NAD+) [Veillonella sp. oral taxon 158 str. F0412]
          Length = 667

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 230/702 (32%), Positives = 367/702 (52%), Gaps = 46/702 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L+QE+++    YY    P + D EYD   R    +  A P+      P+ P  +
Sbjct: 4   KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++  S  KV H  P LSL  ++N +++R F +R+ +           + +E KIDG 
Sbjct: 61  VGMKVEGSFEKVVHGRPMLSLSNVFNADEVRAFASRVEKELG---HKPSAYVVELKIDGL 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G FV A  RGDG  GEDV+A +R I +IP  L  N PE IEVRGE Y+  ++
Sbjct: 118 AVNLHYENGMFVRAVTRGDGRVGEDVTANVRTIKSIPLYL-ENAPEFIEVRGEAYMPHSE 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G   + NPRNAA+G LR+ +P    +R L FF + +G         Q E
Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEEGASIHSQEE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+ +    F VN   R   T   ++   N  +  R  LPYD DG+V KV+ F  Q+ LG
Sbjct: 237 LLKSLENFKFSVNPHYRVCQTIDDVIETINYWEEKRHDLPYDTDGMVIKVNSFDDQEALG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W  ++K+  ++  T L DI I +GRTG+LTP   LE V + G  ++  TLHN+
Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I             +DIR+GD V++ +A E+IP+V+ ++  +R     PF+ P+ CP+
Sbjct: 357 DFI-----------NEKDIRIGDHVIIHKAAEIIPEVIRVVPEKRTGSEVPFTIPNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S  VR          AA RCT    C A + E++ HF SRDA NI+GLG   ++    
Sbjct: 406 CESPTVRREGE------AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     I    D++ L   Q  +          G  S  NL  +I   ++  L+R ++ 
Sbjct: 459 NK----LIANVVDLYHLTVDQLVTM------DRMGKKSAENLVKAIGDSKSRGLDRVLYG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G++ A ++A    S + F                 L+ V  +G  +A +IVE+ 
Sbjct: 509 LGIRLIGSKAAATIANVVQSMERFMTITK----------EELVAVEEIGPTMADSIVEYR 558

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q+P +   +E L +          +   ++++ + +V TG L+ + R +A + +   GA 
Sbjct: 559 QDPAHAAIIEGLTQAGLKMTVDVVEAAGNQMDGEIVVLTGKLEIMGRSEAGKILEAHGAK 618

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           V+  +S+KT +++ G++ GSKL KA +LG+++MNEE+F+ LL
Sbjct: 619 VTGSVSKKTTLVVAGEDSGSKLTKANELGIRVMNEEEFVELL 660


>gi|282899989|ref|ZP_06307949.1| NAD-dependent DNA ligase [Cylindrospermopsis raciborskii CS-505]
 gi|281195087|gb|EFA70024.1| NAD-dependent DNA ligase [Cylindrospermopsis raciborskii CS-505]
          Length = 690

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 227/712 (31%), Positives = 360/712 (50%), Gaps = 53/712 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L + +      YY    PI+ D+ YD L R    +   +P+L  +   + P  ++
Sbjct: 12  QRVEELRKLLQQASYAYYVLDSPIMEDTIYDRLYRELQELEKKYPNLVTT---DSPTQRV 68

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSIFFTLEPKIDGT 137
           G         V H+IP  SLE  +N+E+L+ +  R  R          + +  E KIDG 
Sbjct: 69  GERPATHFSSVRHNIPLYSLENAFNVEELQSWNQRWIRHLPTPHSLTEVEYVAELKIDGA 128

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE---VRGEVYIS 194
            + + Y+ G  V  A RGDG +GED++  +R I +IP  L+ +  E+IE   VRGEV++ 
Sbjct: 129 ALALTYQNGVLVRGATRGDGITGEDITPNVRTIRSIPLRLNFDGIELIEKVEVRGEVFLP 188

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL---GKTSEIF 250
              F  +N +    G + +ANPRNA +G LR+L+P     R L+FF + L   G      
Sbjct: 189 LEVFKQINQKRQKAGEQLFANPRNAVAGTLRQLDPRVVAQRQLDFFAYTLHIPGLDDRSI 248

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A  Q+E LQ ++ LGF V+   +  ++   +  YY    + R   PY  DG+V K++ F 
Sbjct: 249 ANTQWESLQLLQKLGFRVDVNHKLCSSVDEVAQYYQYWNTERLNSPYMTDGVVVKLNAFK 308

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG   + PRW I+ K+A ++A TR+ +I + +GRTG LTP+A + PV + G  ++ 
Sbjct: 309 LQEQLGFTQKFPRWAIALKYAAEEAPTRVENIMVNVGRTGALTPLAEMRPVQLAGTTVSR 368

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D ++ L           DIR+GD V+V++AGE+IP+VV +I   R  D +PF  
Sbjct: 369 ATLHNSDRLREL-----------DIRIGDTVIVRKAGEIIPEVVRVIKELRPNDTEPFIM 417

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C   VVR+L           RC    +C A     ++H+VSRDA +I+G+G++ 
Sbjct: 418 PTNCPVCGQPVVRELGE------VVTRCVNA-SCPAILKGEIEHWVSRDALDIKGIGEKL 470

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +            +   AD++ L   Q         +   G  S   L   I + +N   
Sbjct: 471 VHQLVDK----GLVHSVADLYNLTEEQLCG------LERMGKRSAEKLVQVIRESKNQPW 520

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R ++ LGIRHVG+  A+ L++ + +    A    +           +  V  +G  IAQ
Sbjct: 521 SRVLYGLGIRHVGSVNAQLLSEKFTTVDKLASAKQS----------DIEGVYGIGVEIAQ 570

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSE-IENKKLVFTGTLQKIQRHKA 666
           ++ +++    N   +  L             H +   +  I  K  V TGTL  ++R +A
Sbjct: 571 SVYQWFHISANQNLIIRLETIGIQLATGKSVHARTEPNPQIAGKTFVITGTLPTLKRDEA 630

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  + + G  V+  +S+KTD I+VG + GSKLEKAQ LG+K ++E   L +L
Sbjct: 631 KAMIQKAGGKVTDTVSKKTDFIVVGADAGSKLEKAQSLGIKQLDEANLLEML 682


>gi|53713694|ref|YP_099686.1| DNA ligase [Bacteroides fragilis YCH46]
 gi|81382396|sp|Q64TM7|DNLJ_BACFR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|52216559|dbj|BAD49152.1| DNA ligase [Bacteroides fragilis YCH46]
          Length = 665

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 223/706 (31%), Positives = 349/706 (49%), Gaps = 48/706 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L  ++  H+  YY  + P I D E+D L R    +    P+     D N P  
Sbjct: 3   VKEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEYK---DENSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +      +       E K DG
Sbjct: 60  RVGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRVRKAL----NEDFEICCEMKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195
           T I++ YE GK + A  RGDG  G+DV+  ++ I +IP VL   N PE+ E+RGE+ +  
Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPEVFEIRGEILMPW 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
             F ALN E  A     +ANPRNAASG L+  N   +                +   G Y
Sbjct: 176 EVFEALNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPTDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ+    GF ++  +R+  T   +  + N     R  L    DG+V KV+    Q+ L
Sbjct: 236 ENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+GL           D+ +GD V V++ GE+IPK+  +  + R    +   F + CP
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSVRFMIGEKVKFITHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F+
Sbjct: 405 ECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I   AD++ L             +   GD S  N+   I + + +  ER IF
Sbjct: 459 R----LGLIHDTADLYRLTTDDIRG------LDRMGDKSAENIIKGIMQSKEVPFERVIF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ +AK +   +               D  +LI +  +G+ IA++I+ +
Sbjct: 509 ALGIRFVGETVAKKIAKSFKDIEELENA----------DLETLINIDEIGEKIARSILNY 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           + N  N   V+ L           E       ++  + +V +G      R + ++ + + 
Sbjct: 559 FANESNRKLVDRLKTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTHHSRDEYKDLIEKH 618

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           G      +S KT  I+ GDN G +KLEKA +LG+KIMNEE+FL L+
Sbjct: 619 GGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664


>gi|289435095|ref|YP_003464967.1| DNA ligase, NAD-dependent [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171339|emb|CBH27881.1| DNA ligase, NAD-dependent [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 671

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 369/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLQIEAAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N  DL  F  RI      K    I +  E KIDG 
Sbjct: 61  VGGEVLEGFQKVAHDTPMLSLANAFNKGDLADFDRRIRD----KVGEDIAYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YEKGK+   A RGDG +GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 117 AVSLQYEKGKYKQGATRGDGTTGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+     +R L+ F++ +    E+      +
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVTTHSD 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R       + +Y +E    R+ L YDIDG+V K+++   Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCANLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNDLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTAKSPRWSIAYKFPAEEVPTKLLDIELNIGRTGVVTPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D           +   +DIR+GD VL+K+AG++IP+V+  I  ER  + +PF  P  CP 
Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERTGEEEPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CGSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFT 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI + +  SLE+ +F 
Sbjct: 457 H----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEQSKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 507 LGIRHVGAKAAKSLAIHFETMDNLKLA----------DKETLTSINDIGEKMADSIVTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      ++ L +          K             K +V TG L+++ R+ A+  + 
Sbjct: 557 ANEEVHDLLDELKRANVNMTYTGPKLENMSEEELIFAGKTVVLTGKLEQLTRNDAKSLIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +E   +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLIEYLPDEG 667


>gi|227540068|ref|ZP_03970117.1| DNA ligase (NAD(+)) [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240084|gb|EEI90099.1| DNA ligase (NAD(+)) [Sphingobacterium spiritivorum ATCC 33300]
          Length = 673

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 215/714 (30%), Positives = 370/714 (51%), Gaps = 48/714 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + +++++ L QE+++++  YY  ++ +I D ++D   +  +A+   +P  A   DP
Sbjct: 1   MSAVEIQEKIAQLTQELNHYNYQYYVLAQSLISDYDFDQKLKELEALESQYPQFA---DP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG++      V H  P LSL   ++ E+LR F  R+ +       +   +  E
Sbjct: 58  NSPTRRVGGDITSRFNTVKHRWPMLSLGNTYSQEELRDFDQRVRKIIG----DDFEYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
            K DG  I++ Y+ GK V    RGDG  G++V+A +R I +IP  + + + PE  E+RGE
Sbjct: 114 LKFDGLSISLTYKDGKLVQGVTRGDGTQGDEVTANVRTIRSIPLTLKTNDYPEEFEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVHGLGKTSE 248
           +++ K+ FL LN E    G + YANPRN A+G ++  +  ++ R     F          
Sbjct: 174 IFMHKSAFLRLNKEREENGDQIYANPRNFAAGTIKLQDSAEVARRPLDCFLYFLYMDNRR 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 +E L+ +R  GF V +  R  +    + S+ N   + R  L Y+IDG+V KV++
Sbjct: 234 KHFSTHWESLEAVRKWGFHVCDHTRLCSNIDDVFSFINYWDTERHNLSYEIDGIVIKVND 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           ++ Q++LG  A++PRW  S+KF  ++  T L  I  Q+GRTG +TPVA L+PV++ G  +
Sbjct: 294 YAQQEELGFTAKNPRWATSYKFKAERVETILKSISYQVGRTGAVTPVANLQPVSLAGTTV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN + I  L           D+   D V V++ GE+IPKV+   + +R PDA PF
Sbjct: 354 KRASLHNANEIVRL-----------DLHEQDTVYVEKGGEIIPKVIAANLEKRKPDALPF 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P+ CP CQ+ +VR+         A H C     C  Q + +++HF+ R   +IEG+G 
Sbjct: 403 HYPTHCPECQTLLVREEGE------AVHYCPNEDGCPPQIIGKMQHFIGRKMMDIEGMGN 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++ FFK       IR   DI++L+  ++    +++ +  FG  S+ N+   I K +  
Sbjct: 457 ETIETFFKK----GLIRNVVDIYSLKEHEE----ELQQMERFGQKSIDNMLKGIEKSKEK 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
             E+ +F+LGIRHVG  IA+ LA Y+ +    AQ               +  V  +G  I
Sbjct: 509 PFEKVLFALGIRHVGETIAKKLALYFKNIDALAQA----------SVEEIASVQDIGGRI 558

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKA 666
           A+++ ++   P +   ++ L           ++ +   + +E K  + +G      R + 
Sbjct: 559 AESVHQYLNTPIHQNQIQKLKDYGLQFEIEEKEVILAGNGLEGKTFLISGVFADFSREEL 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
              +   G  + + +S K + ++ GD  G SKL KA++L V I+NE++ L L+ 
Sbjct: 619 TALIESHGGKMVSSISAKLNYLVAGDKMGPSKLAKAEKLQVPIINEQELLVLIN 672


>gi|193213809|ref|YP_001995008.1| NAD-dependentDNA ligase [Chloroherpeton thalassium ATCC 35110]
 gi|254781288|sp|B3QSH0|DNLJ_CHLT3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193087286|gb|ACF12561.1| DNA ligase, NAD-dependent [Chloroherpeton thalassium ATCC 35110]
          Length = 684

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 219/721 (30%), Positives = 363/721 (50%), Gaps = 55/721 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++  +A  ++ +L +EI+ H+  YY  +KP I D ++DAL R    +   +PDL     P
Sbjct: 1   MNKSEAEAKIRALRREINEHNYNYYNLAKPKISDYDFDALLRTLAELEAKYPDLV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GGE+  +   V H    LSL   +N+ +L  F+ R+ +  + +   +  FT E
Sbjct: 58  DSPSQRVGGEVTKNFPIVRHKTRMLSLSNTYNLGELGDFLARVAKSLESEGVQAYDFTAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP------------RVLSL 179
            K DG  +++ Y  G  V  A RGDG  G++++A ++ + TIP                 
Sbjct: 118 LKYDGVAVSLIYRDGLLVQGATRGDGSQGDEITANLKTVRTIPLRLRAPASGSAFDTEKW 177

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFF 239
           N    IEVRGEV+++K DF  +N E     +  +ANPRNA +G L++ +  ++ +     
Sbjct: 178 NGSGDIEVRGEVFMTKADFEKINAERDESEQ--FANPRNATAGTLKQQDSREVAKRRLTM 235

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           V               E L+K+  LGF      R   +   I ++ +E ++ R  L Y+I
Sbjct: 236 VAYYLDGRPFADLSHGERLEKLAELGFYTGEAHRTCRSLQDIQAFLDEWENKRDALAYEI 295

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG V K++    Q+ LG  ++SPRW I++K+A ++A T L ++  Q+GRTG +TPVA L+
Sbjct: 296 DGAVIKLNNVRYQELLGATSKSPRWAIAYKYAARRAETVLENVVFQVGRTGAITPVAELQ 355

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G++I+ +TLHN D I+ L           D+ +GDRV+++++G+VIPKVV ++  
Sbjct: 356 PVKLSGSVISRSTLHNLDEIRRL-----------DLHIGDRVIIEKSGDVIPKVVGVVAE 404

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R P+A+     S CP C + +    N         + C     C AQ+  RL HF SR 
Sbjct: 405 KRPPEARTIEPLSTCPSCGTPLEHPENE------VIYYCPNEFGCPAQRKARLVHFASRH 458

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG+  ++        A  I  P D++ +++      T +  +  F + S  NL 
Sbjct: 459 AMDIEGLGEAVVEQLL----GAGLIGDPGDLYFIEK------TALLALERFAEKSAQNLL 508

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           + I   ++ S ER IF+LGIR+VG   A  LA  + S                     L 
Sbjct: 509 NGIEASKSRSFERLIFALGIRYVGRRTASILADRFTSLDTIKSASQA----------ELC 558

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTL 658
               +G+ IA+++  F+  P+    +  L +     +  +   +         +VFTG+L
Sbjct: 559 ETEEIGETIAKSVALFFTKPQVQELLGKLERAGLRLASDKKSPDAPQTFAGMTVVFTGSL 618

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +   R  A   V + G  V++ +S+KT +++ G   G KL KA++LGVKI+ E +F  +L
Sbjct: 619 ENFTRDDAAAKVGERGGKVTSTVSKKTSLVVAGKEAGGKLAKAEKLGVKIVTEAEFQTML 678

Query: 719 Q 719
            
Sbjct: 679 A 679


>gi|313623350|gb|EFR93577.1| DNA ligase, NAD-dependent [Listeria innocua FSL J1-023]
          Length = 671

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 364/711 (51%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 4   KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWV---TPESPSKR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N +DL  F  RI      K  + I +  E KIDG 
Sbjct: 61  VGGEVLEGFKKVEHDTPMLSLANAFNRDDLADFDRRIRD----KVGDDISYMCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YE GK+   A RGDG  GED++A +R I +IP  L       IEVRGE ++ K  
Sbjct: 117 AVSLQYENGKYKQGATRGDGTVGEDITANLRTIRSIPMKLKKAYS--IEVRGEAFMPKRS 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+     +R L+ F++ +    E+  +    
Sbjct: 175 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSA 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R  +    + +Y +E    R+ L YDIDG+V K++    Q+Q+G
Sbjct: 235 GLDMLETLGLKVNKERRLCSNLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              +SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D           +   +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP 
Sbjct: 355 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERTGSEKPFHMPKNCPT 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 404 CDSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F 
Sbjct: 457 ----MHLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +   ++
Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNL----------KIADKETLTSINDIGEKMADSXXTYF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      +E L +          K             K +V TG L+K+ R+ A+  + 
Sbjct: 557 ANEEVHDLLEELKRAGVNMTYTGPKLENMSEEELVFAGKTVVLTGKLEKLTRNDAKALIE 616

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 617 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 667


>gi|313632855|gb|EFR99806.1| DNA ligase, NAD-dependent [Listeria seeligeri FSL N1-067]
          Length = 678

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 245/711 (34%), Positives = 370/711 (52%), Gaps = 53/711 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L   +  +   YY    P + D+EYD   +    I  A P+      P  P  +
Sbjct: 11  KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLQIEAAHPEWI---TPESPSKR 67

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+     KV H  P LSL   +N +DL  F  RI      K    I +  E KIDG 
Sbjct: 68  VGGEVLEGFQKVAHDTPMLSLANAFNKDDLADFDRRIRD----KVGEDIAYMCELKIDGL 123

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++++YEKGK+   A RGDG +GED++A +R I +IP  L  +    IEVRGE ++ K  
Sbjct: 124 AVSLQYEKGKYKQGATRGDGTTGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRS 181

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+     G+  +ANPRNAA+G LR+L+     +R L+ F++ +    E+      +
Sbjct: 182 FQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVTTHSD 241

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +  LG  VN   R       + +Y +E    R+ L YDIDG+V K+++   Q+Q+G
Sbjct: 242 GLDMLETLGLKVNKERRLCANLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNDLEQQRQMG 301

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNE
Sbjct: 302 TTAKSPRWSIAYKFPAEEVPTKLLDIELNIGRTGVVTPTAVLEPVRVAGTTVSRASLHNE 361

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D           +   +DIR+GD VL+K+AG++IP+V+  I  ER  + +PF  P  CP 
Sbjct: 362 D-----------LITEKDIRIGDTVLIKKAGDIIPEVIKSITEERTGEEEPFHMPKNCPT 410

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ +   F 
Sbjct: 411 CGSELVRLEEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFT 463

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD+F L +       K+  +   G+ SVTNL  SI + +  SLE+ +F 
Sbjct: 464 H----HLIKDVADLFFLSKE------KLLELERMGEKSVTNLLASIEQSKQNSLEKLLFG 513

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++
Sbjct: 514 LGIRHVGAKAAKSLAIHFETMDNLKLA----------DKETLTSINDIGEKMADSIVTYF 563

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            N      ++ L +          K             K +V TG L+++ R+ A+  + 
Sbjct: 564 ANEEVHDLLDELKRANVNMTYTGPKLENMSEEELIFAGKTVVLTGKLEQLTRNDAKSLIE 623

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LG  VS  +S+KTD+++ G + GSKL KA++L + I +E   +  L    
Sbjct: 624 SLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLIEYLPDEG 674


>gi|310826558|ref|YP_003958915.1| DNA ligase [Eubacterium limosum KIST612]
 gi|308738292|gb|ADO35952.1| DNA ligase [Eubacterium limosum KIST612]
          Length = 666

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 236/711 (33%), Positives = 371/711 (52%), Gaps = 52/711 (7%)

Query: 12  LSIE--QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           ++ E  QA  ++S L+++I  ++  YY    P+I D  YD + +   ++  A+P    S 
Sbjct: 1   MNEELKQAEAKISQLKKQIEENNVRYYDKDAPVIPDYAYDRMMQELISLETAYPQFLTS- 59

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG  + +  KV ++ P LSL   +N  DLR F TRI +         + + 
Sbjct: 60  --DSPSQRVGGAPSEAFEKVHYTTPKLSLSNAFNAGDLRDFDTRIRKVC-----PDVAYC 112

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +E K DG  + + YE G  V  + RGDG +GE+V+  ++ + TIP  L+  +   +EVRG
Sbjct: 113 VEHKFDGLTVVLDYENGLLVRGSTRGDGVTGENVTQNLKTVKTIPLRLTEPM--TLEVRG 170

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EV I K DF  LN      G   +ANPRNAA+G +R+L+P     R L+ FV  L     
Sbjct: 171 EVLIYKEDFEELNAAREEQGEPLFANPRNAAAGSIRQLDPKLAAERPLDIFVFNLEYCEN 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVYKVD 307
              +   E    +   GF  +  V+       I++Y  EM+       PY+IDG+V KV+
Sbjct: 231 RSFETHKESFDFLTHCGFKTSE-VKLYKDMEDIITYIEEMEHGGREALPYEIDGMVIKVN 289

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             + +++LG+ ++SPRW I++KF+ +Q  T + DI +Q+GRTG LTPVA LEPV + G++
Sbjct: 290 NLAERERLGDTSKSPRWAIAYKFSPEQTVTTVRDITVQVGRTGALTPVAELEPVLLAGSV 349

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           I+ ATLHNEDYI             +DIR+GDRV++++AG+VIP+V   I  +R      
Sbjct: 350 ISRATLHNEDYI-----------IDKDIRIGDRVVIQKAGDVIPEVDHSIPEDRTGAEVV 398

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F+ P+ CP+C S   R          A  +C     C AQ   ++ HF SRDA NI+G+G
Sbjct: 399 FTMPAHCPVCGSETYRVPGE------AVTKCLNM-DCPAQVFRKIVHFASRDAMNIDGMG 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
              +     +E     I    DI+ +  R++     +  +   G+ SV NL ++I   ++
Sbjct: 452 PAVVRQLLDNE----LIHTIVDIYHVSDRRE----DLTGLEKMGEKSVDNLINAIEDSKS 503

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L + +F+LGI  VGA  A+ LA ++ S     +               L  +  +G  
Sbjct: 504 RPLSKVVFALGIPLVGANGAKILASHFGSMDALMEASE----------EELTEIYDIGGK 553

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A  IV+F++   N   V+ L +          +  + E+  K  V TGTL  + R +A+
Sbjct: 554 MAVEIVDFFKTDANRRIVDGLREAGVNMTENTARATA-ELAGKTFVLTGTLPTMGRREAK 612

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +   GA VS  +S+KTD ++ G+NPGSK EKA  L V +++EE F  ++
Sbjct: 613 EILESHGAKVSGSVSKKTDYVLAGENPGSKAEKAMSLDVPVIDEETFKKMV 663


>gi|93005182|ref|YP_579619.1| DNA ligase, NAD-dependent [Psychrobacter cryohalolentis K5]
 gi|122989955|sp|Q1QDW8|DNLJ_PSYCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|92392860|gb|ABE74135.1| DNA ligase, NAD-dependent [Psychrobacter cryohalolentis K5]
          Length = 691

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 248/722 (34%), Positives = 380/722 (52%), Gaps = 43/722 (5%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
            K       A + +    ++ +    +  H+  YY    PI+ DSEYD L+R    +   
Sbjct: 10  SKDINTAKSAANEDAIVAQMRTFIDALKKHNYAYYVLDNPILEDSEYDQLRRSLLELEEE 69

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           +PDL +   P+ P+N++G     +  +VTH IP LSL  ++  +DLR F+ R+       
Sbjct: 70  YPDLIQ---PDSPINQVGDMPLSAFTQVTHDIPMLSLGNVFEYDDLRDFMRRVNDRLSVA 126

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLN 180
             +   + +E K+DG  ++++Y  GKFV A  RGDG +GED++   + I  +P  + + +
Sbjct: 127 QQSP-EYEMELKLDGLAVSLKYAYGKFVQAVTRGDGQTGEDITQNAKTIRNLPLWIPAAS 185

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFF 239
             E++EVRGEV + K  F  LN      G K +ANPRNAA+G LR+L+P         F+
Sbjct: 186 DIELLEVRGEVLMPKAGFERLNRLAEEKGDKTFANPRNAAAGSLRQLDPAIAASRPLAFY 245

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            + + +      K Q   L  ++ +GF   + V          +YY  +K  R  LP++I
Sbjct: 246 CYSVNQGLPEHIKTQSAALAWLKTIGF-TVSAVEVVQNPREAQAYYESVKETRGDLPFEI 304

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV+  +LQ+QLG  +R PRW  ++KF  +   TRL  I+ Q+GRTG +TPV +LE
Sbjct: 305 DGMVIKVNSLALQQQLGFLSREPRWATAYKFPAETVMTRLHAIEWQVGRTGAITPVGKLE 364

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG  ++N TLHN   I+ L           D+R GD V V RAG+VIPKV  +  +
Sbjct: 365 PVKVGGVTVSNVTLHNFGEIQRL-----------DVRAGDMVSVHRAGDVIPKVTRVWTD 413

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  +++P   PS CP+C S VV   +       A  RCTGGL C AQQ+E L HFVSR 
Sbjct: 414 QRPENSEPVKLPSTCPVCDSPVVLPKDE------ALARCTGGLFCPAQQVEALIHFVSRR 467

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +I+GLG   L  FF+       ++  ADI+ L   Q+    ++  +   G+ SV N+ 
Sbjct: 468 AMDIDGLGASWLISFFEH----GLVKTVADIYQLHNHQE----ELITLEKLGEKSVQNIL 519

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   +  +L RFI++LGIR VG   A++LA+ +                       L+
Sbjct: 520 SAIEASKQTTLARFIYALGIRGVGETTAQNLAQQFGDLDALMSA----------SIEKLL 569

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTL 658
             P VG I A+   +F++ P NI  + AL +         +       ++ +  V TG L
Sbjct: 570 LTPDVGAITAELTYKFFRAPHNIEVINALREAGVHWDKVEQVASEGLPLDGQTWVITGAL 629

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R +A+  +  LGA VS  +S KT  ++ GD  GSK+ KA++LGVK++ EE+FL L+
Sbjct: 630 DSMARDEAKAKLQALGAKVSGSISAKTTALLAGDKAGSKMAKAEKLGVKVVGEEEFLVLV 689

Query: 719 QQ 720
            +
Sbjct: 690 GE 691


>gi|299139723|ref|ZP_07032896.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX8]
 gi|298598347|gb|EFI54512.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX8]
          Length = 723

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 243/762 (31%), Positives = 363/762 (47%), Gaps = 92/762 (12%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            P  ALS +   +++ +L +++ +H+  YY    P + D++YDA       +    P+L 
Sbjct: 4   TPSNALSPD---QQIEALREDLRHHEHLYYVLDAPELTDAQYDARMNELRRLETEHPELV 60

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+ P  ++GG+      KV HS P LSL+  +N  +LR +  R+           +
Sbjct: 61  ---TPDSPTQRVGGKPKEGFAKVAHSRPMLSLDNAYNEAELRAWAERVVSGL--PSGEVV 115

Query: 127 FFTLEPKIDGTMITIRYEKG-----KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
            F  E K+DG  + ++Y+ G            RG+G  GEDV+  +R I ++P  +    
Sbjct: 116 RFVCELKLDGLSLALQYDAGAKHEAVLKTGVTRGNGTIGEDVTTNVRTIRSVPLHIQAAK 175

Query: 182 PE------IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITR 234
                     EVRGEV + +  F  +N E  A G  P ANPRNAA+G +R L P     R
Sbjct: 176 LAKAGLPQQFEVRGEVVLPQKAFEKMNAEREAAGLAPAANPRNAAAGTIRTLEPNIVAQR 235

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            L FF + L +  E     Q   LQ +R  GF VN   R   +   ++++ NE + +R  
Sbjct: 236 RLEFFAYFLLREGEPLLAEQSSALQALREAGFLVNKHARTVGSIDEVLAFINEAEPLRDG 295

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LPY+IDG+V KVD  + Q++LG   ++PRW I++KF  + A TRL D+  Q+GRTG +TP
Sbjct: 296 LPYEIDGVVIKVDAIAQQRRLGFTGKAPRWAIAYKFPARAAVTRLDDVLFQVGRTGKVTP 355

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L PV IGG  +T ATLHN D I  L            +RVGD V V+R G+VIPK+ 
Sbjct: 356 VAALAPVFIGGTTVTRATLHNADEIARL-----------GVRVGDFVSVERGGDVIPKIT 404

Query: 415 DIIVNERHP-DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
           +++ + +HP       FPS CP+C S +VR             RC   + C A+  E L 
Sbjct: 405 EVVEDAKHPRGTSEIIFPSHCPVCGSELVRAEGE------VDWRCINAV-CPARVREELL 457

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDP--------------------------------- 500
           H+ +R   NIEGLG+  +       +                                  
Sbjct: 458 HWAARGVMNIEGLGESMVAQLLGQAEEDSESAEGRSGLQPGLSESVSDEGLQTGLAEPIK 517

Query: 501 ---AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 IR  AD+++L R Q  +      +   G+ +   L   I + +   L R +F L
Sbjct: 518 TSHEPLIRSIADLYSLTREQLLT------LERVGEKTADALLAEIERSKQAPLARVLFGL 571

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG   A  LA+++ S  +  +               L  V  VG  +AQAIVEF+ 
Sbjct: 572 GIRFVGERTASLLAEHFGSLDDLMKA----------SAEDLEAVNEVGPRVAQAIVEFFA 621

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +N   VE L   V  +    ++ V +       V TGTL  + R +A++ +   G  V
Sbjct: 622 EEKNRELVEKLRT-VGLTFTAEKRVVGTTFAGLTFVLTGTLPTLTRDEAKQRIEDAGGKV 680

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           S  +S+KT  ++ G++ GSKLEKAQQLGV +++E   L L+ 
Sbjct: 681 SGSVSKKTSYVVAGEDAGSKLEKAQQLGVAVLDEAGLLALIA 722


>gi|227543584|ref|ZP_03973633.1| DNA ligase, NAD-dependent [Lactobacillus reuteri CF48-3A]
 gi|300909387|ref|ZP_07126848.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri SD2112]
 gi|227186424|gb|EEI66495.1| DNA ligase, NAD-dependent [Lactobacillus reuteri CF48-3A]
 gi|300893252|gb|EFK86611.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri SD2112]
          Length = 680

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 238/725 (32%), Positives = 384/725 (52%), Gaps = 50/725 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M ++Q  P++ L++++A+ E+  L  +++     YY+   P + D  YD   +R   +  
Sbjct: 1   MSQKQ-TPVKELTLQEAQDEIKPLRAKLTEWGKEYYEQDNPTVEDHVYDRAYQRLVQLEE 59

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP L      + P  ++GG     L KV H IP LS+  +++IE+L  F  R      +
Sbjct: 60  QFPQLL---SADSPTQRVGGATESQLTKVRHEIPMLSMGDVFSIEELMDFNQRQQE--NR 114

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             +    + LE KIDG  +++ YE GK V  + RG+G  GEDV+A +R I ++P  L   
Sbjct: 115 DVEVEPEYNLELKIDGLSLSLVYENGKLVQGSTRGNGTIGEDVTANVRTIKSVPAELPEP 174

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +   IEVRGE Y+ K  F  LN +  A G   +ANPRNAA+G LR+L+P     R L+ F
Sbjct: 175 LS--IEVRGECYMPKAAFAKLNAKREAEGLPVFANPRNAAAGSLRQLDPKVTAQRELDTF 232

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ + +  ++  K Q E L +MR LGF VN   R  +    I  Y  E  + R  L Y I
Sbjct: 233 IYYVPEYQKLGVKTQAEALDRMRELGFNVNLNNRVVHNREEIEKYIEEYTAQRDKLTYGI 292

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV++   +  LG   + PRW I++KF  ++ +T + DI   +GRTG +TP A ++
Sbjct: 293 DGIVEKVNDLDTEVALGNTVKVPRWEIAYKFPPEEQATIVRDIVWTVGRTGNVTPTAVMD 352

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  ++ A+LHN DY++            +DIR+GD V + +AG++IP++  + + 
Sbjct: 353 PVQLAGTTVSRASLHNPDYLR-----------EKDIRIGDTVYLHKAGDIIPEISKVDLT 401

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  D+  +  P+ CP+C S +V            A RC   + C AQ  E L HF SR+
Sbjct: 402 KRPADSVEYEIPTKCPVCSSELVHLDGE------VALRCINPM-CPAQIKEGLAHFASRN 454

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NI+GLG + ++  +  E     I   A ++ L   Q  +      +  FG+ S  NL 
Sbjct: 455 AMNIDGLGPRIIEQLWDKE----LIHDVAGLYRLNHDQLLT------LDKFGEKSTANLL 504

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            SI+  RN S+ER +F LGIRHVGA+ AR + +++    +  +  +            + 
Sbjct: 505 TSIDNSRNNSVERLLFGLGIRHVGAKAARIIMEHFGDLDSLMKAND----------DEIS 554

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTG 656
            +  +G  I ++IV ++ N + +  ++ L +          R   N  SE   +++V TG
Sbjct: 555 AISGIGPTIGESIVTYFANQQVVKLIDELREVGVNFAYLGSRSNANPDSEWNGRRVVLTG 614

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L ++ R +A+ ++   GA V+  +S+KTDI+I G + GSKL KAQ LG+ + NE+QF  
Sbjct: 615 KLTEMTRGEAKLWLENHGAKVTGSVSKKTDIVIAGADAGSKLTKAQDLGIDVWNEQQFSQ 674

Query: 717 LLQQY 721
            +++ 
Sbjct: 675 AMKEE 679


>gi|160889578|ref|ZP_02070581.1| hypothetical protein BACUNI_02004 [Bacteroides uniformis ATCC 8492]
 gi|317480069|ref|ZP_07939180.1| DNA ligase [Bacteroides sp. 4_1_36]
 gi|156861095|gb|EDO54526.1| hypothetical protein BACUNI_02004 [Bacteroides uniformis ATCC 8492]
 gi|316903746|gb|EFV25589.1| DNA ligase [Bacteroides sp. 4_1_36]
          Length = 665

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 231/707 (32%), Positives = 359/707 (50%), Gaps = 50/707 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L  E+  H+  YY  + P I D E+D L R    +    P+    +D N P  
Sbjct: 3   VKEKIDQLRAELHQHNYNYYVLNAPEISDKEFDDLMRELQDLEKEHPEY---QDDNSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +      +       E K DG
Sbjct: 60  RVGSDLNKNFTQVAHKYPMLSLGNTYSENEVTDFYERVKKAL----NEDFEICCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE GK V A  RGDG  G+DV+  ++ I TIP VL  N P+  E+RGE+ +   
Sbjct: 116 TSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNYPKSFEIRGEILMPWV 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F  LN E  A     +ANPRNAASG L+  N   +               E+   G YE
Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGEELPCDGHYE 235

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ     GF  +   R+A++   +  Y N   + R  LP   DG+V KV+    QK LG
Sbjct: 236 NLQAAASWGFKTSEHTRKAHSLEEVFEYINYWDTERKNLPVATDGIVLKVNSLRQQKNLG 295

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN 
Sbjct: 296 FTAKSPRWAIAYKFQAERALTRLNRVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHNA 355

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435
           D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F + CP
Sbjct: 356 DIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSMLIGEKVKFITHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F+
Sbjct: 405 ECGSKLIRFEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I+  AD++ L+     +      +   G+ S  N+ + I   + +  ER +F
Sbjct: 459 R----LGLIKDTADLYQLKTDDIKN------LERMGEKSAENIVNGIAASKEVPFERVLF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ +AK +   +               D   L  +  +G+ IAQ+I+ +
Sbjct: 509 ALGIRFVGETVAKKIAKSFTDIEELENA----------DLEKLKNIDEIGEKIAQSIITY 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           + NP N   VE L       + R E+++S    ++  + +V +G      R + +E + +
Sbjct: 559 FSNPANRELVERLKSNG-LQLHRTEEDLSGYTDKLAGQSIVISGVFTHHSRDEYKEMIEK 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G      +S KT  I+ G+N G +KLEKAQ+LGVKIM+E++FL LL
Sbjct: 618 NGGKNVGSISSKTSFILAGENMGPAKLEKAQKLGVKIMSEDEFLALL 664


>gi|60681965|ref|YP_212109.1| putative DNA ligase [Bacteroides fragilis NCTC 9343]
 gi|81314971|sp|Q5LCI0|DNLJ_BACFN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|60493399|emb|CAH08185.1| putative DNA ligase [Bacteroides fragilis NCTC 9343]
          Length = 665

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 223/706 (31%), Positives = 349/706 (49%), Gaps = 48/706 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L  ++  H+  YY  + P I D E+D L R    +    P+     D N P  
Sbjct: 3   VKEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEYK---DENSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +      +       E K DG
Sbjct: 60  RVGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRVRKAL----NEDFEICCEMKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195
           T I++ YE GK + A  RGDG  G+DV+  ++ I +IP VL   N PE+ E+RGE+ +  
Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPEVFEIRGEILMPW 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
             F ALN E  A     +ANPRNAASG L+  N   +                +   G Y
Sbjct: 176 EVFEALNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPTDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ+    GF ++  +R+  T   +  + N     R  L    DG+V KV+    Q+ L
Sbjct: 236 ENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+GL           D+ +GD V V++ GE+IPK+  +  + R    +   F + CP
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSVRFMIGEKVKFITHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F+
Sbjct: 405 ECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I   AD++ L             +   GD S  N+   I + + +  ER IF
Sbjct: 459 R----LGLIHDTADLYQLTTDDIRG------LDRMGDKSAENIIKGIMQSKEVPFERVIF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ +AK +   +               D  +LI +  +G+ IA++I+ +
Sbjct: 509 ALGIRFVGETVAKKIAKSFKDIEELENA----------DLETLINIDEIGEKIARSILNY 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           + N  N   V+ L           E       ++  + +V +G      R + ++ + + 
Sbjct: 559 FANESNRKLVDRLKTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTHHSRDEYKDLIEKH 618

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           G      +S KT  I+ GDN G +KLEKA +LG+KIMNEE+FL L+
Sbjct: 619 GGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664


>gi|260436246|ref|ZP_05790216.1| DNA ligase, NAD-dependent [Synechococcus sp. WH 8109]
 gi|260414120|gb|EEX07416.1| DNA ligase, NAD-dependent [Synechococcus sp. WH 8109]
          Length = 680

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 223/717 (31%), Positives = 352/717 (49%), Gaps = 49/717 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    +  + L   ++     YY    P++ D+ YD L R    +    P L R   P+ 
Sbjct: 1   MADPHERAAELRHLLNRAGHAYYVLDAPVMEDAVYDRLYRELLELEQNDPGLQR---PDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG+       V H +  LSL+  +N +DLR +  R+ +   + +D  +    E K
Sbjct: 58  PTQRVGGDPAEGFTNVEHRVGMLSLDNAFNRDDLRAWHERLLKVLDRPNDTRLPLVGELK 117

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVY 192
           IDG  + + Y  G    AA RGDG  GE+++A +R I +IP      N PE +EVRGE +
Sbjct: 118 IDGNALALSYRNGVLERAATRGDGSRGEEITANVRTISSIPLRLQIENPPEWVEVRGEAF 177

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251
           I    F A+N E    G   +ANPRNA +G LR+L+P     R L+FF + L    +   
Sbjct: 178 IPDATFAAINAEREQRGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPGDAQP 237

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            GQ+  L+ +   GF VN           I  + +  +  R  LPY  DG+V K+D   L
Sbjct: 238 PGQWAALEWLNTAGFRVNPNRELCGELAAIQRFCDHWEQGRHDLPYATDGVVVKLDNLQL 297

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q + G   ++PRW I+ K+  ++A TRLL I  Q+GRTG +TPVA  E V + G  ++ A
Sbjct: 298 QDEAGFTQKAPRWAIALKYPAEEAPTRLLRIGAQVGRTGAITPVAEFEAVALAGTSVSRA 357

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D I  L           D+ +GD ++V++AGE+IP+VV ++   R  DA P   P
Sbjct: 358 TLHNADRIAEL-----------DLHLGDTIVVRKAGEIIPEVVRVLPELRPSDATPVQLP 406

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C S +VR+ +       AA RC    +C A     L+H+VS+ A +++GLG + +
Sbjct: 407 QQCPECGSNLVREGDE------AATRCVNS-SCPAILRGGLRHWVSKSALDVDGLGSKLI 459

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   +       +   AD++ L      S      +   GD S TNL +++   +     
Sbjct: 460 EQLVER----GLVGSLADLYRLDAALLAS------LDRMGDKSATNLVEALEASKQQPWH 509

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LGIRH+G   A++LA  + S         ++ A   +    +  +  +G  I+ +
Sbjct: 510 RQLYGLGIRHIGEVNAKALAAAFFSID-------SLAAAALEAPEQIAELHGIGPEISAS 562

Query: 612 IVEFYQNPRNICAVEALLK-EVSPSIGRHEKNV--------SSEIENKKLVFTGTLQKIQ 662
           + ++ + P N   ++ L   E+S      E+             ++ K LV TGTL  + 
Sbjct: 563 LGQWLRTPANQQLLQDLRSVELSLEASASEQEAASQAGADADGVLQGKTLVLTGTLPNLS 622

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R +A+  +      VS  +S+KTD ++ G+  GSKL KA+ LGV +++E     LLQ
Sbjct: 623 RSEAKALIEAADGKVSGSVSKKTDYLVAGEAAGSKLTKAESLGVTVLSEADLTALLQ 679


>gi|67920947|ref|ZP_00514466.1| NAD-dependent DNA ligase [Crocosphaera watsonii WH 8501]
 gi|67857064|gb|EAM52304.1| NAD-dependent DNA ligase [Crocosphaera watsonii WH 8501]
          Length = 670

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 226/697 (32%), Positives = 369/697 (52%), Gaps = 47/697 (6%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
             +  YY    PI+ D+ YD L R  D +      L  S   + P  ++G +       +
Sbjct: 15  KANYAYYVLDNPIMEDAVYDQLYRELDTLEKENTHLITS---DSPTQRVGDKPASQFVSL 71

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H+IP  SLE  +N+E+L+ +  R  R+ +K++  S  +  E KIDG+ + + YE G  +
Sbjct: 72  AHNIPLYSLENAFNLENLQAWQKRWQRYSEKENIESAEYVCELKIDGSALALTYENGLLI 131

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
               RGDG +GED++  +R I +IP  L+  N P IIEVRGE ++  ++F  +N +    
Sbjct: 132 RGVTRGDGTTGEDITQNVRTIRSIPLKLNLENPPPIIEVRGEAFLPLDEFDRINQQREEN 191

Query: 209 GRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268
           G   +ANPRNAA+G LR+L+P  + +    F              Q+E L  ++  GF V
Sbjct: 192 GEALFANPRNAAAGTLRQLDPKIVDQRRLQFFAYTLHLETTDINSQWESLNYLQNSGFLV 251

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
           N   +   +   +  Y+ + ++ R  LPY  DG+V K++++SLQK LG   + PRW I+ 
Sbjct: 252 NTHRKLCPSLEEVADYFQQWETERKDLPYMTDGVVVKINDYSLQKVLGFTQKFPRWAIAL 311

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           K+  ++A T + DI + +GRTG +TP+A +EPV++ G  +  ATLHN D IK L      
Sbjct: 312 KYPAEEAPTIVKDIIVNVGRTGAVTPMAVMEPVHLAGTTVQKATLHNSDRIKQL------ 365

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
                DIRVGD V++++AGE+IP+VV ++ + R P+ Q +  PS CP C S + R  N  
Sbjct: 366 -----DIRVGDTVIIRKAGEIIPEVVRVLDDLRPPNTQLYQMPSHCPECDSTLKRPPNE- 419

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508
                A  RC   L+C A     L H+ SRDA +I GLG++ +     +      +   A
Sbjct: 420 -----AVTRCMN-LSCGAILRGSLVHWASRDALDIRGLGEKIVILLINN----GLVNSLA 469

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           D++ L         KI N+   G  S  NL ++I   +     R ++ LGIR+VG+  A 
Sbjct: 470 DLYDLTPE------KIANLERMGSKSANNLIEAIEGSKKQPFSRVLYGLGIRYVGSVTAG 523

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            LA+ + S +  +Q            +  L  V  VG+ IAQ+I++++   +N   ++ L
Sbjct: 524 LLAENFPSMEQLSQA----------SFSDLSSVYGVGEEIAQSIIDWFSIEKNCDLIQQL 573

Query: 629 LKEVSPSIGRHEKNVS-----SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
            K          K  +     +    K  V TGTL  ++R++A+  + + G  V++ +S+
Sbjct: 574 EKVGLQLEATKSKTPTVDSPLTPFAGKTFVITGTLPSLKRNEAKALIMEAGGKVTSSVSK 633

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +TD +++G+NPGSKL +A++LG+  ++E +FL L+++
Sbjct: 634 RTDYLLLGENPGSKLTQAEKLGITQLSEAEFLTLVKK 670


>gi|309389839|gb|ADO77719.1| DNA ligase, NAD-dependent [Halanaerobium praevalens DSM 2228]
          Length = 670

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 231/715 (32%), Positives = 388/715 (54%), Gaps = 48/715 (6%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            L+ E+A K++++L+++I  H+  Y+    P I D+E+D L +    +   FPDL     
Sbjct: 3   NLNKEKASKKITALKEKIRKHEYKYFVLDDPSISDAEFDQLMQELIKLESEFPDLI---T 59

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG +     KV HS   LSL+  +N EDL +F  R+ +  + +D     + +
Sbjct: 60  EDSPTQRVGGAVLDEFKKVKHSTKMLSLDNAFNKEDLIEFDQRVQKNLKGEDYQ---YVV 116

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG    +RY  G F   A RG+G  GED+S  ++ I ++P  +       +++RGE
Sbjct: 117 EHKIDGLSAVMRYNNGTFELGATRGNGEVGEDISNNMKTIRSLPLKIEE--KAEMQLRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEI 249
           +Y++K++F  LN + +     P+ANPRNAA+G +R+L+        L+  ++ L   S+ 
Sbjct: 175 IYLAKSEFKRLNKQRLENDESPFANPRNAAAGSVRQLDSKIAAERSLSILIYDLISHSKR 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             K   E+   ++  GF +N   + A+    ++    +    R  L ++IDGLV K+++ 
Sbjct: 235 EFKTHLEVFAYLKKQGFKIN-WYQAASNIESVIEICQDWHQKREKLDFEIDGLVIKINDL 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +L+K+LG  ARSPRW I++KF  +Q +T++ DI+I +GRTG LTP A L+PV + G+ ++
Sbjct: 294 ALRKKLGNTARSPRWAIAYKFPAQQKTTKIKDIEISLGRTGALTPTAILDPVELAGSTVS 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNED IK            +DI++GD VLV++AG+VIP+VV +I  +R    + F 
Sbjct: 354 RATLHNEDEIKR-----------KDIKIGDIVLVQKAGDVIPEVVKVITEKRDGSEKEFE 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C   V+R          A  RCT  ++C AQ+ E + HFVSR+A NI+G+G  
Sbjct: 403 MPKNCPVCGGEVIRPEGE------AVSRCTN-ISCPAQRKESILHFVSRNAMNIDGVGPA 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++    +      I   AD++ L++      + ++++   G+ S  N+  +I   +   
Sbjct: 456 LIEQLLANN----LIEDYADLYFLKQ------SHLKDLERMGEKSSENVIKAIEASKKRE 505

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             R +++LGIRHVG   AR LA+ + S                     L  +  +G +IA
Sbjct: 506 FFRVLYALGIRHVGIGAARILAENFNSIDELKSA----------KIDDLKNISEIGPVIA 555

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            +IV F+Q   NI  +  L +       +  +   + ++  K VFTG+L    R + ++ 
Sbjct: 556 DSIVNFFQERHNIDLLSRLKQAGIRLKNKASQENENFLDQLKFVFTGSLNDFTRSEIKDL 615

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           V   G    + +S KTD +++GDNPGSK +KAQ LG++I+NE +F  ++++  ++
Sbjct: 616 VENAGGRAVSSVSSKTDYLVIGDNPGSKYDKAQSLGIEILNESEFKEMIKKKRSS 670


>gi|296046569|gb|ADG86426.1| NAD-dependent DNA ligase [Francisella novicida]
          Length = 689

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 246/712 (34%), Positives = 389/712 (54%), Gaps = 61/712 (8%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92
             YY   +P + D+EYD L      +    P+L      + P  K+GG+   S  +VTH 
Sbjct: 20  HEYYVLDQPSVPDAEYDRLMTALIDLEKTNPELKTI---DSPSQKVGGQALKSFTQVTHQ 76

Query: 93  IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152
           +P LSL+ +++++D   F+ R+       D+ +I F  EPK+DG  +++RYE G+ + AA
Sbjct: 77  LPMLSLDNVFSLDDFHAFVKRVKDRLN--DNQAIVFCAEPKLDGLAVSLRYEHGQLIQAA 134

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEVYISKNDFLALNDEMIAV 208
            RGDG  GE+++  IR I +IP  L      + P+I+EVRGEV++ K  F ALN      
Sbjct: 135 TRGDGSVGENITTNIRTIKSIPLKLMGTPGKDFPDIVEVRGEVFMPKASFDALNTXAKKR 194

Query: 209 GRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK--------------TSEIFAKG 253
           G K +ANPRNAA+G LR+L+      R L F+ + LG               T++ FA  
Sbjct: 195 GEKGFANPRNAAAGSLRQLDSKITAKRNLAFYAYSLGFVGKLSDGGAESTDLTNDFFANS 254

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E L +++ LG P+   VR   +     ++Y ++ + RS L Y+IDG V KVDE SLQK
Sbjct: 255 HHERLCQLKRLGLPMCPEVRLLESEQACDAFYQDILAKRSALSYEIDGTVLKVDEISLQK 314

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I++KF  ++  T + D++ Q+GRTG +TPVARL+PV +GG  ++NATL
Sbjct: 315 RLGFVARAPRWAIAYKFPAEEELTCVEDVEFQVGRTGAITPVARLKPVFVGGVTVSNATL 374

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+D I  L            ++V D V+++RAG+VIP++V +++++R  +A    FP+ 
Sbjct: 375 HNQDEITRL-----------GLKVNDFVVIRRAGDVIPQIVSVVLDKRPDNAVDIVFPTS 423

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S V +          A  RCT GL C+AQ+ E +KHF SR A +++GLG + ++ 
Sbjct: 424 CPVCDSAVAKPEGE------AVLRCTAGLFCAAQRKEAIKHFASRKAHDVDGLGDKLVEQ 477

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               +     I   AD+F L   Q ++      I   G  S TNL + + + ++ +L +F
Sbjct: 478 LVDEK----LINTXADLFKLTEIQVST------IDRMGKKSATNLINGLEQAKSTTLAKF 527

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I+ LGIR VG   A +LA ++ +                     L  V  VG+++A+ I+
Sbjct: 528 IYGLGIREVGEATAANLANHFYTLAAIESA----------SLEDLQNVSDVGEVVAKNII 577

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            F++   N+  V  L + +       +      +  +  V TGTL ++ R +A+  +  L
Sbjct: 578 NFFKEEHNLAIVSGLSEVMHWPTIEIKSAEELPLAEQIFVLTGTLTQMGRTEAKTALQSL 637

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           GA VS  +S+ T  ++ GD  GSKL KAQ LG+ ++ E+  + LL ++  T+
Sbjct: 638 GAKVSGSVSKNTHFVVAGDKAGSKLTKAQDLGISVLTEDGLVALLAEHGITI 689


>gi|332519658|ref|ZP_08396122.1| DNA ligase, NAD-dependent [Lacinutrix algicola 5H-3-7-4]
 gi|332044217|gb|EGI80411.1| DNA ligase, NAD-dependent [Lacinutrix algicola 5H-3-7-4]
          Length = 665

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 224/705 (31%), Positives = 370/705 (52%), Gaps = 47/705 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E+  L QE+  H+  YY    P I D ++D   +   A+  A P+     D N P  +
Sbjct: 4   KQEIEQLRQELREHNYNYYVLDNPTISDYDFDIKLKELQALEEAHPEFF---DANSPTLR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+  +   V H     SL+  +++EDL+ + TRI +      D  I +T E K DG 
Sbjct: 61  VGGEVTKNFNTVVHEHRMYSLDNSYSLEDLKDWETRIKKLV----DGDISYTCELKYDGA 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  + A  RGDG  G++V+A I+ I ++P  L  + P   ++RGE+ +    
Sbjct: 117 SISLTYENGNLLKAVTRGDGFQGDEVTANIKTIKSVPLQLKGDYPAKFDIRGEIVLPFKG 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           FL +N+E +A G +PY NPRN ASG L+  +  ++ +     +      + +  + Q+E 
Sbjct: 177 FLKMNEERVANGEEPYKNPRNTASGSLKLQDSGEVAKRPLECLLYNLTGTNLGVENQFES 236

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+K R +GF V N  R   T   +  + N   + R  LPY+ DG+V KV+    Q++LG 
Sbjct: 237 LEKARKMGFKVPNEARLCKTIDEVFKFINHWDTERHNLPYETDGVVVKVNSLYQQEELGY 296

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +++PRW +++KF  +Q ST L +I  Q+GRTG +TPVA LEPV++ G ++  A+LHN D
Sbjct: 297 TSKAPRWAMAYKFKAEQVSTILKEITYQVGRTGAITPVANLEPVDLAGTVVKRASLHNAD 356

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+ L           DIR+ D V V++ GE+IPK++ + + +R  D++P  + + CP C
Sbjct: 357 QIEKL-----------DIRINDTVFVEKGGEIIPKIIAVDLTQRLQDSKPTKYATHCPEC 405

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           Q+ + R          A H C     C  Q + R++HF+SR A +IEGLG + +    K 
Sbjct: 406 QTPLERLEGE------AKHFCPNYNGCEPQVIGRIQHFISRKAMDIEGLGGETVGLLVKE 459

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I   AD++TL + Q      I  +    + S  NL + I   + IS ER +F++
Sbjct: 460 ----GLITNYADLYTLTKAQ------ILPLERMAEKSAENLINGIEASKQISFERVLFAI 509

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR VG  +A+ LAK+Y S +   Q               L +V  +G  IA+++V F+ 
Sbjct: 510 GIRFVGETVAKKLAKHYKSIEALEQA----------SIEDLEKVDEIGIKIAESVVSFFA 559

Query: 618 NPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +  N   ++ L               N +++++ K  V +G   K+ R++ ++ +   G 
Sbjct: 560 SEENRNIIKRLKNVGVQLEISAEKLANQTNKLKGKSFVVSGVFTKVSRNELKKLIEDNGG 619

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
              + +S KTD ++ GD  G SK EKA++L + ++ E++FL ++ 
Sbjct: 620 KNVSSISSKTDFVVAGDKMGPSKKEKAEKLNISLITEDEFLQMVD 664


>gi|332705189|ref|ZP_08425270.1| DNA ligase, NAD-dependent [Lyngbya majuscula 3L]
 gi|332355932|gb|EGJ35391.1| DNA ligase, NAD-dependent [Lyngbya majuscula 3L]
          Length = 1092

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 221/736 (30%), Positives = 360/736 (48%), Gaps = 63/736 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
              + +  L + +      YY    PI+ D+ YD L R    +   +P+L  S   + P 
Sbjct: 7   DVNQRIQELRRLLQNASYAYYVLDNPIMADAIYDQLYRELQELETEYPELVTS---DSPT 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR----FWQKKDDNSIFFTLE 131
            ++G +       V H+IP  SL+  +N+E+  ++  R  R       +    +  +  E
Sbjct: 64  QRVGEKPATGFVSVRHNIPLYSLDNAFNLEEFSQWQERWQRHISGDISQDSGFNTEYVCE 123

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS------LNIPEII 185
            KIDG+ + + YE G  V    RGDG +GED++  +R I +IP  L+        +P ++
Sbjct: 124 LKIDGSALALTYENGILVRGVTRGDGSTGEDITQNVRTIRSIPLRLNLDQLNLDQLPALV 183

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244
           EVRGE ++  + F  +N E    G   +ANPRNAA+G LR+L P     R L FF + L 
Sbjct: 184 EVRGEAFLPLDVFERINQERAQAGEPLFANPRNAAAGTLRQLEPRIVAKRQLAFFAYTLH 243

Query: 245 KTSE--------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
             ++             Q++ L+ ++ LGFPVN   +   +   +  YYN   + R  LP
Sbjct: 244 IPNQDSSEEYTIPMPNCQWDALELLQKLGFPVNPHRQCCASLQDVQDYYNYWDARRQDLP 303

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           Y  DG+V K++ F +Q+QLG   + PRW I+ K+  ++A +R+  I + +GRTG +TP+A
Sbjct: 304 YLTDGVVVKINAFGIQQQLGFTQKFPRWAIALKYPAEEAPSRVEAITVNVGRTGAVTPLA 363

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            LEPV + G  +  A LHN DY+  L           D+RVGD V+V++AGE+IP+VV +
Sbjct: 364 ILEPVQLAGTTVQRAALHNGDYVAQL-----------DLRVGDTVIVRKAGEIIPEVVRV 412

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           +   R   A+PF  P+ CP+C   +VR          A  RC    +C A     L H+ 
Sbjct: 413 LPELRPDHAKPFEMPTHCPVCSQPLVRPKGE------AVTRCINS-SCPAIVKGTLTHWA 465

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR+A +I GLG++ ++           +   AD++ L   Q  S      +   G     
Sbjct: 466 SRNALDINGLGEKIVEQLVDQ----GLVTSVADLYDLTLDQLVS------LERMGHKLAQ 515

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
            L ++I K +     R ++ LGIRHVG+  A++L + + + +  AQ              
Sbjct: 516 KLLNAIAKSKTQPWSRVLYGLGIRHVGSVNAQTLVQTFPTIEQLAQAT----------VT 565

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLV 653
            +  +  +G  IAQ++  ++Q   N   +  L +         +    + +  +  K  V
Sbjct: 566 DIEGIYGIGPEIAQSVWGWFQISSNQTLIARLREAGLQLEASTKTIALDQTQPLTGKTFV 625

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL  ++R  A++ +   G  V++ +S KTD ++VG++ GSKLEKAQ+LG+  + E Q
Sbjct: 626 ITGTLPTLKRSDAKDLIQNAGGKVTSAVSAKTDYLVVGEDAGSKLEKAQKLGITQLTESQ 685

Query: 714 FLFLLQQYNTTLRIHD 729
            L   Q++  T     
Sbjct: 686 LLVKSQKFPATEEAPT 701



 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 71/250 (28%), Positives = 119/250 (47%), Gaps = 23/250 (9%)

Query: 472  LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
            L H+ SR A +I GLGK+ ++           +   AD++ L   Q  S      + G G
Sbjct: 863  LTHWASRYALDINGLGKKIVEQLVDQ----GLVTSVADLYNLTLEQLVS------LNGIG 912

Query: 532  DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
                  L ++I K +     R ++ LGIRHVG+  A++L + + + +  AQ         
Sbjct: 913  HKLAQKLLNAIAKSKTQPWSRVLYGLGIRHVGSVNAQTLVQTFPTIEQLAQAT------- 965

Query: 592  NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIE 648
                  +  +  +G  IAQ++  ++Q   N   +  L +         +    + S  + 
Sbjct: 966  ---VTDIEGIYGIGPEIAQSVWGWFQISSNQTLIARLREAGLQLEASTKTIALDKSLPLT 1022

Query: 649  NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
             K  V TGTL  ++R  A++ +   G  V++ +S KTD ++VG++ GSKLEKAQ+LG+  
Sbjct: 1023 GKIFVITGTLPTLKRSDAKDLIQNAGGKVTSAVSAKTDYLVVGEDAGSKLEKAQKLGITQ 1082

Query: 709  MNEEQFLFLL 718
            + E Q L LL
Sbjct: 1083 LTESQLLDLL 1092



 Score = 94.1 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 20/182 (10%)

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
           T  LA +  Q   L H+ SR+A +I GLGK+ ++           +   AD++ L   Q 
Sbjct: 701 TVQLAGTKVQQRALTHWASRNALDINGLGKKIIEQLVDQ----GLVTSVADLYDLTLEQL 756

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578
            S      + G G      L ++I K +     R ++ LGIRHVG++ A++LAK + + +
Sbjct: 757 VS------LKGIGYKLAQKLLNAIAKSKTQPWSRVLYGLGIRHVGSDKAKTLAKKFRNIE 810

Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638
             AQ               +  +  +G  IA+++ +++QN  N   ++ L +    SI +
Sbjct: 811 QLAQAT----------IPDIEGIYSIGPKIAKSVRDWFQNSSNQTLIDRLREAGLQSIDK 860

Query: 639 HE 640
             
Sbjct: 861 RP 862


>gi|315502322|ref|YP_004081209.1| DNA ligase, nad-dependent [Micromonospora sp. L5]
 gi|315408941|gb|ADU07058.1| DNA ligase, NAD-dependent [Micromonospora sp. L5]
          Length = 717

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 224/709 (31%), Positives = 361/709 (50%), Gaps = 43/709 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR+  ++L QE++ H   YY    P + D+E+D   R  +A+   +P L     P+ P  
Sbjct: 32  ARERHATLSQELTEHQYRYYVLDAPTVTDAEFDKQLRELEALEAEYPAL---RTPDSPTQ 88

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG  +     VTH+   LSL+  +  E+L  +  R+ R         + +  E K+DG
Sbjct: 89  RVGGTFSTDFTPVTHAERMLSLDNAFADEELAAWSERVER----DAGGPVPYLCELKVDG 144

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-----SLNIPEIIEVRGEV 191
             I + YEKG+ V AA RGDG +GEDV+A +R+I  +P  L       ++P++IEVRGE+
Sbjct: 145 LAINLTYEKGRLVRAATRGDGRTGEDVTANVRSIKGVPARLTPAGDFPDVPDLIEVRGEI 204

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y     F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L   VHG+G  +   
Sbjct: 205 YFPVAAFADLNASLVEQGKAPFANPRNAAAGSLRQKDPRVTASRPLRLVVHGVGARTGFR 264

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E    ++  G P ++  R  +   G+  Y       R  + ++IDG+V KVD  S
Sbjct: 265 PAAQSESYAALKAWGLPTSDRWRVVDDLAGVAEYIAYYGRHRHDVEHEIDGVVVKVDPVS 324

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q +LG  +R+PRW I+ K+  ++ +T+LLDI++++GRTG +TP A L+PV + G+ +  
Sbjct: 325 IQGRLGSTSRAPRWAIAFKYPPEEVNTKLLDIEVEVGRTGRVTPRAVLQPVRVAGSTVAY 384

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN   ++            + + +GD V++++AG+VIP+V+  +V  R  DA+PF  
Sbjct: 385 ATLHNAREVER-----------KGVLIGDTVVLRKAGDVIPEVLGPVVELRPADARPFVM 433

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + +         +     RC  G AC  Q  ER+ +  SR   +IE LG++ 
Sbjct: 434 PTTCPACGTPLA-----PAKESDVDIRCPNGRACPGQIRERVFYLASRKVLDIEVLGEKG 488

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                 ++     I    D+F L   Q + +    N  G    + T L D++ + +   L
Sbjct: 489 AAALLDAQ----IITNEGDLFQLDAEQLSRSPFFVNKDGSLGSNATKLLDNLAEAKERDL 544

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IRHVG   A++LA+++ S          + A        L  V  VG  IA 
Sbjct: 545 WRVLVALSIRHVGPTAAQALARHFRS----------VAAIEAAGEEELSSVDGVGPTIAA 594

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ E++    +   V    +                ++   +V TGTL    R +A E +
Sbjct: 595 SVKEWFAVDWHRDVVRKWAEAGVRMAEEAADEGPRPLDGITVVVTGTLGGFSRDQAAEAI 654

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G  V+  +S+KT  ++VGDNPGSK +KA  L + I++E+ F  LL 
Sbjct: 655 QVRGGKVTGSVSKKTGFVVVGDNPGSKADKAATLKLPILDEDGFRVLLD 703


>gi|119503165|ref|ZP_01625249.1| DNA ligase (NAD+) [marine gamma proteobacterium HTCC2080]
 gi|119460811|gb|EAW41902.1| DNA ligase (NAD+) [marine gamma proteobacterium HTCC2080]
          Length = 673

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 229/708 (32%), Positives = 359/708 (50%), Gaps = 47/708 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S      E+  L   +      YY+   P + DSEYD        +   FP L      
Sbjct: 1   MSEVDPYDEVMRLRDLLRSWGVEYYRNDAPTVSDSEYDRTLLALRELEQKFPHLV---SA 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G         V H +P LSL+  +N +DL  F  R+       D   + +  E
Sbjct: 58  DSPTQRVGAAPLEGFETVVHRLPMLSLDNAFNADDLLDFDRRVRERL---DGAQVRYACE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-EVRGE 190
           PK+DG  ++I +++G+   AA RGDG +GE+++  +R I ++P  LS        E RGE
Sbjct: 115 PKLDGIAVSIVWQEGELTLAATRGDGRTGENITQNVRTIDSVPLRLSGENIPRYLEARGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT--S 247
           +++ +  F A N      G KP+ NPRNAA+G LR+L+ +    R L+F  +GLG     
Sbjct: 175 IFMPRAGFEAFNARARRDGGKPFVNPRNAAAGSLRQLDSSITRRRPLSFCAYGLGYVEGM 234

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   E + ++   G P++   R      G   YY ++  +R  L +DIDG+V+KVD
Sbjct: 235 SGALLSHTEAMAQLNQWGLPISEHSRSVPGIDGCERYYEDLSQVREGLGFDIDGIVFKVD 294

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            F+ Q++LG  +R+PRW I+ KF  ++  T +L ++ Q+GRTG +TPVARL+PV +GG  
Sbjct: 295 TFAEQERLGFVSRAPRWAIARKFPAQEEMTVVLGVEFQVGRTGAVTPVARLDPVFVGGVT 354

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN D I  L            I+VGD V+V+RAG+VIP+V  ++V+ R P A+ 
Sbjct: 355 VSNATLHNADEIARL-----------GIKVGDTVIVRRAGDVIPQVAGVVVDRRLPQAED 403

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
            +FP  CP C S +VR+         A  RC  G AC AQ+   ++HFVSR A +I+G G
Sbjct: 404 VAFPDSCPACDSVLVREPGE------AVWRCDAGSACPAQRRAAIEHFVSRRAMDIDGCG 457

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ +D           I+  +D++ L +           +   G  S  NL  +I   +N
Sbjct: 458 EKIIDQLVD----LDLIKTASDLYELSQDTLAG------LERMGTKSAKNLQAAIEDSKN 507

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L RFI++LGIR VG   AR LA+Y+ +        +            L  V  VG I
Sbjct: 508 TTLSRFIYALGIREVGETTARQLAEYFGALAPLFTATD----------EQLQEVEDVGPI 557

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A  +  F+ +P     + +L+           +     +  +  V TG L+++ R +A+
Sbjct: 558 VAGHLQRFFADPGRQEMINSLISHGVYWPAPEVQIGDLPLSGQTWVVTGKLEQMSRDQAE 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           E +   GA VS+ +S KT  ++ G   GSKL+KA  L V +++E +F+
Sbjct: 618 ERLRVFGAKVSSSVSGKTSCVVAGPGAGSKLKKAHSLEVSVIDEAEFI 665


>gi|164686703|ref|ZP_02210731.1| hypothetical protein CLOBAR_00298 [Clostridium bartlettii DSM
           16795]
 gi|164604093|gb|EDQ97558.1| hypothetical protein CLOBAR_00298 [Clostridium bartlettii DSM
           16795]
          Length = 674

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 232/707 (32%), Positives = 371/707 (52%), Gaps = 50/707 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            A+K +  L   I+YH++ YY    P I D EYD L +    +    P+L R+   + P 
Sbjct: 2   SAQKRIEELINLINYHNEKYYNQDSPEIEDFEYDNLMKELIKLEEENPELKRN---DSPS 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           N++GG+      +V H IP LSL   ++ EDL+ F +R+           + + +E KID
Sbjct: 59  NRVGGKPLDKFEQVVHKIPMLSLSNAYSWEDLKDFDSRVREAVGS----DVEYVVEFKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y  G F   A RG+G  GE+++  +  I  IP  +       + VRGEVYISK
Sbjct: 115 GLSVGLNYNNGIFESGATRGNGIVGENITKNLMTIKNIPLNIDE--KGELTVRGEVYISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF  +N       +  YANPRN A+G LR+L+      R L+ F+  L   +    K  
Sbjct: 173 KDFEEINKIQEEQDQPLYANPRNLAAGSLRQLDSKLTAKRPLDIFIFNLEDINSKQFKTH 232

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L+ ++ LGF V+   +   T   I+ Y       R  L + IDG+V KV+  + ++Q
Sbjct: 233 SESLEYLKQLGFHVSPEFKVFKTMDEIIEYIKYWTEHREDLGFGIDGMVIKVNNLAQREQ 292

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           +G  A+SPRW I++KF  ++  T+LLDI +++GRTG +TP A LEP+ + G  ++ ATLH
Sbjct: 293 MGYTAKSPRWAIAYKFPAERKETKLLDIVVEVGRTGTITPTAVLEPIRLAGTTVSRATLH 352

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NEDYI             +DI++ D VLV++AG++IP+VV++I  +R  +   F  P  C
Sbjct: 353 NEDYI-----------NEKDIKINDTVLVQKAGDIIPQVVEVIKEKRTGEEIEFKMPEEC 401

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C    VR          AA +C   ++C AQ    + HF SR+A +I+GLG+  +   
Sbjct: 402 PVCGEPTVRLEGE------AAVKCIN-ISCPAQIRRGIIHFASREAMDIDGLGESIITLL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            K +     I+  +D++ L++ Q +       +   GD S TNL ++INK +   L RFI
Sbjct: 455 LKQD----LIKDISDLYYLKKEQIS------VLERMGDKSATNLINAINKSKENDLWRFI 504

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             LGI+ +G + A+ LA  +                       LI +   G  +A ++VE
Sbjct: 505 NGLGIKLIGTKAAKILASEFKDLDKLMSATE----------QELINLEEFGQTMADSVVE 554

Query: 615 FYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           F++  +NI  +E L +    +  I   ++++    E  K+V TGTL  ++R+ A+E + +
Sbjct: 555 FFKEEKNISVIEKLKEAGVNTKLIESDDEDIPKIFEKMKIVLTGTLPTLKRNDAKEMIEK 614

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL L+ 
Sbjct: 615 RGGKATSSVSKSTSFVLAGEEAGSKLTKANDLGIKVIDEEKFLQLID 661


>gi|188995252|ref|YP_001929504.1| DNA ligase [Porphyromonas gingivalis ATCC 33277]
 gi|254781390|sp|B2RKL2|DNLJ_PORG3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|188594932|dbj|BAG33907.1| DNA ligase [Porphyromonas gingivalis ATCC 33277]
          Length = 669

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 218/704 (30%), Positives = 348/704 (49%), Gaps = 47/704 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            +  L + +  H+  YY  S P I D EYDA+ ++ + +   +P+    + P+ P +++G
Sbjct: 10  RIEELRRILREHEYRYYVLSSPTIDDFEYDAMMKQLEELEREYPEW---DSPDSPTHRVG 66

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +       V H  P LSL   +N +++  F  R+    Q           E K DG  I
Sbjct: 67  SDKTEGFASVRHDRPMLSLSNTYNYDEIGDFYRRVSEGLQ---GAPFEIVAELKFDGLSI 123

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-EVRGEVYISKNDF 198
           ++ YE G  V A  RGDG  G+DV+A +R I ++P  L  +    + EVRGE+ +   +F
Sbjct: 124 SLIYEDGMLVRAVTRGDGIMGDDVTANVRTIRSVPLRLRGDDYPRMLEVRGEILLPFKEF 183

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N +  A G   +ANPRNAASG +++L+P  +             + E  A+  Y+ L
Sbjct: 184 DRINAQREAEGEPLFANPRNAASGTIKQLDPHIVAGRNLDAYFYYLYSDEPLAENHYDRL 243

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            + R  GF V++ V    +   + ++ +   + R TLP   DG+V KV+  + Q  LG  
Sbjct: 244 MQARQWGFKVSDAVTLCCSKEDVYAFIDRFDTERLTLPVATDGIVLKVNAPAQQDLLGFT 303

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           A+SPRW I++K+  ++  TRL  +  Q+GRTG +TPVA L+PV I G ++  A+LHN D+
Sbjct: 304 AKSPRWAIAYKYQAERVRTRLQHVSYQVGRTGAVTPVANLDPVLISGTVVRRASLHNADF 363

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +D+  GD V V++ GE+IPK+V +  + R  D +P  F   CP C 
Sbjct: 364 I-----------AEKDLHEGDFVYVEKGGEIIPKIVGVDTDARSIDGRPIVFTVLCPDCA 412

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           + +VR+         AA+ C     C  QQ  RL+H+  R A +I    +       +  
Sbjct: 413 TPLVREQGE------AAYYCPNAEGCPQQQKGRLEHYCGRKAADINIGPET-----IELL 461

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                IR  AD + L   Q  +      + GF   +   L DSI   +    +  +F LG
Sbjct: 462 YSRNMIRNVADFYALTEEQLLT------LPGFKKRAAAKLLDSIEASKARPYQAILFGLG 515

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IR VG  +A+ LA  Y S    A   +            L+++  +G+ IA A++ F+  
Sbjct: 516 IRFVGETVAKKLAAVYPSIDALAAATS----------EELVQIDEIGERIAAAVLHFFSL 565

Query: 619 PRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
            +N   +E L L  VS         VS+ +  K +V +GT +K  R + +  V   G  +
Sbjct: 566 RQNRELIERLRLAGVSLEAETVSVPVSARLAGKTVVISGTFEKYSRDEYKAMVEDNGGRM 625

Query: 678 SAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +S KT  I+ G + G SK EKA++LGV++M+EE+FL L+++
Sbjct: 626 AGSVSSKTSFILAGSDMGPSKREKAEKLGVRLMSEEEFLRLIEE 669


>gi|301163404|emb|CBW22954.1| putative DNA ligase [Bacteroides fragilis 638R]
          Length = 665

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 222/706 (31%), Positives = 348/706 (49%), Gaps = 48/706 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L  ++  H+  YY  + P I D E+D L R    +    P+     D N P  
Sbjct: 3   VKEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEYK---DENSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +      +       E K DG
Sbjct: 60  RVGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRVRKAL----NEDFEICCEMKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195
           T I++ YE GK + A  RGDG  G+DV+  ++ I +IP VL   N PE+ E+RGE+ +  
Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPEVFEIRGEILMPW 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
             F ALN E  A     +ANPRNAASG L+  N   +                +   G Y
Sbjct: 176 EVFEALNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPTDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ+    GF ++  + +  T   +  + N     R  L    DG+V KV+    Q+ L
Sbjct: 236 ENLQEAAKWGFKISPLMHKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+GL           D+ +GD V V++ GE+IPK+  +  + R    +   F + CP
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSVRFMIGEKVKFITHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F+
Sbjct: 405 ECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I   AD++ L             +   GD S  N+   I + + +  ER IF
Sbjct: 459 R----LGLIHDTADLYRLTTDDIRG------LDRMGDKSAENIIKGIMQSKEVPFERVIF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ +AK +   +               D  +LI +  +G+ IA++I+ +
Sbjct: 509 ALGIRFVGETVAKKIAKSFKDIEELENA----------DLETLINIDEIGEKIARSILNY 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           + N  N   V+ L           E       ++  + +V +G      R + ++ + + 
Sbjct: 559 FANESNRKLVDRLKTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTHHSRDEYKDLIEKH 618

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           G      +S KT  I+ GDN G +KLEKA +LG+KIMNEE+FL L+
Sbjct: 619 GGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664


>gi|329770498|ref|ZP_08261876.1| DNA ligase [Gemella sanguinis M325]
 gi|328836247|gb|EGF85916.1| DNA ligase [Gemella sanguinis M325]
          Length = 666

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 235/712 (33%), Positives = 385/712 (54%), Gaps = 48/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ ++E+  L + ++ +   YY    P I D+EYD L ++ + +   +P+L +    N 
Sbjct: 1   MKEIKEEIYKLVKLLNKYSYDYYVEDNPQISDTEYDTLYKQLEKLEKEYPELIQE---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G  +     KVTH +P LSL   ++ EDLR F  RI +      +  I +  E K
Sbjct: 58  PTQRVGDVVLSEFEKVTHKVPMLSLSNTFSTEDLRDFDNRIKKVV---ANRKIEYICELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+I Y  GK + AA RGDG  GE+V+  I+ I +IP+VL     +  EVRGEVY+
Sbjct: 115 IDGLAISINYVNGKLISAATRGDGTVGEEVTDNIKTIFSIPKVLKD--NKTFEVRGEVYL 172

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            K  F  LN+E        +ANPRNAA+G LR+L+                   +   + 
Sbjct: 173 PKKSFNILNEERKENNEVLFANPRNAAAGSLRQLDSKIT-AQRRLSAFIYSVVGDNTIES 231

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q + L+       PVNN  +       +++Y       R  LPY+IDG+V KV+ +SLQ+
Sbjct: 232 QLQALKTAEEYELPVNNNYKLCKNIDEVINYIEYWDINRKNLPYEIDGIVIKVNSYSLQE 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           ++G   +SPRW  + KF E++ +T+LLD+++ +GRTGI+TPVA+L+P+ I G+ ++ A+L
Sbjct: 292 EIGYTQKSPRWATAFKFPEEELATKLLDVELSVGRTGIVTPVAQLDPIVISGSTVSKASL 351

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+D I  L           DI +GD V+VK+AGE+IPKVV ++   R  +++ +  P+ 
Sbjct: 352 HNKDVIDEL-----------DIHIGDMVIVKKAGEIIPKVVRVLKELRLENSEKYIMPNR 400

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S +V   +    +            C  Q + ++ HF SRDA NIEGLG + +  
Sbjct: 401 CPSCNSELVSKKDDPFIR-------CVNPECPEQNIRKIIHFASRDALNIEGLGDKVVAT 453

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            ++       I    D+F+L+R +         +   G+ SV NL  +I   +N SL++ 
Sbjct: 454 LYEQ----GIISHTIDLFSLEREKLID------LDRMGEKSVDNLLKAIENSKNSSLDKV 503

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGI +VG + A+ LA+ YL+                     LI +P +G I A++++
Sbjct: 504 IYALGILNVGKKAAKILAEKYLNLTTLMTAT----------VDELINLPDIGLITAESVI 553

Query: 614 EFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           +F  N  NI  +  L+    +P     +    +    K +V TG L ++ R++A+EY+ +
Sbjct: 554 DFLSNEINIKFINDLISIGMNPQYKVQKIEDDNIFSGKTIVLTGKLVELTRNEAKEYLEK 613

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           LGA V+  ++ KTD+++ G+  GSKL KA+QLG+++++EE+F+ +L +    
Sbjct: 614 LGAKVTGSVTTKTDLVLAGEKAGSKLAKAEQLGIQVISEEEFISMLGEKKVN 665


>gi|221066629|ref|ZP_03542734.1| DNA ligase, NAD-dependent [Comamonas testosteroni KF-1]
 gi|220711652|gb|EED67020.1| DNA ligase, NAD-dependent [Comamonas testosteroni KF-1]
          Length = 708

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 250/711 (35%), Positives = 379/711 (53%), Gaps = 52/711 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++++L  ++      YY    P + D EYD + ++ +A+  A+P L     P+ P  ++ 
Sbjct: 32  KVAALRAQLWQWAHEYYVLDAPTVPDGEYDRVYQQLEALEGAYPALV---TPDSPTQRVI 88

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKDDNS-IFFTLEPKIDG 136
           G +   L  V H++P LS++   + E      F  R+ +        + I +  EPK DG
Sbjct: 89  GAVLDGLTPVRHAVPMLSIQTETDNEATGAMAFDQRVRKELGLDASAAAIEYVAEPKFDG 148

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI--PEIIEVRGEVYIS 194
             + +RYE G+ V A  RGDG  GEDV+  IR I  IP  L  +   P ++EVRGEV+++
Sbjct: 149 LAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRQIPLSLPADRNVPPVVEVRGEVHMA 208

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI---- 249
           K D   LN    A G K +ANPRNAA+G +R+L+ +    R L+FF +GLG+ +      
Sbjct: 209 KADLEKLNARQQAAGAKTFANPRNAAAGSVRQLDSSIAAQRPLSFFAYGLGEITPPEQGG 268

Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 Y MLQ +R  GFPV   V  A     +V+++  + + R+ LPY+IDG+VYKV+ 
Sbjct: 269 PDFGTHYAMLQTLRSWGFPVAPQVALARGASELVAFHQRIGAERANLPYEIDGVVYKVNS 328

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG ++R PRW ++HK+  ++  T +  ID+Q+GRTG LTPVARL PV +GG ++
Sbjct: 329 LALQRRLGFKSREPRWAVAHKYPAQEMPTLMEAIDVQVGRTGKLTPVARLAPVQVGGVVV 388

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNATL N   I+            + +RVGD+V+V+RAG+VIP+VV  +  ER      F
Sbjct: 389 TNATLSNLFDIRK-----------KGVRVGDQVIVRRAGDVIPEVVGRVPGERPVYVPNF 437

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CPIC S VVR+         A HRCTGGL C AQ+ E + HF  R A +IEGLG 
Sbjct: 438 RMPRTCPICASAVVREKGE------ANHRCTGGLFCGAQRKEAILHFAHRRAMDIEGLGD 491

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +D           +R+  D++ L        + +  +    + S  N+  ++ K ++ 
Sbjct: 492 KLVDQLVD----GQVVRVLPDLYRL------GLSSLAALDRMAEKSAQNVLAALEKSKST 541

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L+RF+F LGIR+VG   AR LAK++                       L++V  VG ++
Sbjct: 542 TLQRFLFGLGIRNVGESTARDLAKHFGKLDAIMDA----------SVEELLQVKDVGPVV 591

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           A +I  F+  P N   VE L         G   +     +    +V TGTL  + R  A+
Sbjct: 592 ADSIHTFFAQPHNREVVEQLRACGVHWEEGEPVEKAPQILAGLTVVLTGTLPTLGRDVAK 651

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + +   GA VS  +S+KT  ++ G   GSKL KA++LGV +++E   L LL
Sbjct: 652 DMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVPVLDEAGMLALL 702


>gi|161485980|ref|NP_737948.2| NAD-dependent DNA ligase LigA [Corynebacterium efficiens YS-314]
 gi|259506289|ref|ZP_05749191.1| DNA ligase [Corynebacterium efficiens YS-314]
 gi|259166069|gb|EEW50623.1| DNA ligase [Corynebacterium efficiens YS-314]
          Length = 678

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 223/717 (31%), Positives = 351/717 (48%), Gaps = 52/717 (7%)

Query: 12  LSIEQARKE--LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           ++ + A+     + L +++ YH D YY   +P I D+++DAL R+   +    P+LA   
Sbjct: 1   MTDDNAQLRRTWNELAEKVRYHRDLYYNQ-QPEIPDADFDALFRQLQDLEEQHPELAV-- 57

Query: 70  DPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            P+ P  ++G  +    S   V H    LSL+ +++ E+LR ++ R           +  
Sbjct: 58  -PDSPTKEVGAPVTEQSSFDNVEHLERMLSLDNVFDEEELRDWLART---------PAKR 107

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR----VLSLNIPE 183
           +  E KIDG  I + Y  G    AA RGDG  GED++A  R I  IP          IP 
Sbjct: 108 YLTELKIDGLSIDLVYRNGMLERAATRGDGRVGEDITANARVIGDIPHELTATEEYPIPA 167

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHG 242
           ++EVRGEV+I   DF  +N + I  G KP+ANPRNAA+G LR+ NP D   R L    HG
Sbjct: 168 VLEVRGEVFIPIEDFADVNAQRIEDGGKPFANPRNAAAGSLRQKNPEDVKKRRLRMITHG 227

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +G +       Q++    +   G P ++      T   +V         R    +++DGL
Sbjct: 228 IGYSEGFQPASQHDAYLALAAWGLPTSSYTEAVETADAVVDKVLYWADHRHDALHEMDGL 287

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVD+ + Q+ LG  +R+PRW I++K+  ++ +T+L+DI + +GRTG +TP A +EPV 
Sbjct: 288 VIKVDDIASQRALGSTSRAPRWAIAYKYPPEEVTTKLIDIKVSVGRTGRVTPFAMMEPVF 347

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G+ ++ ATLHN+  +K            + + +GD V+V++AGEVIP+V+  +V  R 
Sbjct: 348 VAGSTVSMATLHNQSEVKR-----------KGVLIGDTVVVRKAGEVIPEVLGPVVELRD 396

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              + F FP  CP C S +            A  RC    +C  Q  +RL +   R AF+
Sbjct: 397 GTEREFVFPEHCPECGSTLAPTRAE-----DADWRCPNTRSCPGQLSQRLTYIAGRGAFD 451

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IE LG++      ++      +   A +F L       +       G  + S   L  ++
Sbjct: 452 IEALGEKGAQDLIRN----GILVDEAGLFDLTEEDLLESDVYTTKAGAVNASGRKLLANL 507

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            +R+N  L R + +L IRHVG   AR+LA  Y S Q                   L    
Sbjct: 508 EQRKNTDLWRVLVALSIRHVGPTAARALAGRYRSMQKLVDAP----------VDELAETD 557

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            VG IIAQ+  ++++   +   V+              + +   +E   +V TG L+   
Sbjct: 558 GVGMIIAQSFKDWFEVDWHRAIVDTWAAAGVTMEDAETEQLEQTLEGLTIVVTGGLEGFT 617

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R   +E +   G   S  +S+KTD ++VG+N GSK  KA++LG+ I++EE F+ LL 
Sbjct: 618 RDSVKEAIISRGGKASGSVSKKTDYVVVGENAGSKATKAEELGLTILDEEAFVRLLD 674


>gi|240168924|ref|ZP_04747583.1| NAD-dependent DNA ligase LigA [Mycobacterium kansasii ATCC 12478]
          Length = 683

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 217/713 (30%), Positives = 350/713 (49%), Gaps = 43/713 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +   L +++  H   YY    PII D+E+D L RR + +   +P+L     P+ P   +G
Sbjct: 4   QWQDLAEQVREHQFRYYVRDAPIITDAEFDELLRRLEVLEEQYPEL---RTPDSPTQLVG 60

Query: 80  GE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G         V H    LSL+  ++  +L  +  R++     +  ++  +  E KIDG  
Sbjct: 61  GAGFATEFEPVEHLERMLSLDNAFSAAELAAWAARVH----AEVGDAASYLTELKIDGVA 116

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYIS 194
           +++ Y++G+   A+ RGDG +GEDV+   R I  +P  L       +PE++EVRGEV+  
Sbjct: 117 LSLVYQQGRLTRASTRGDGRTGEDVTLNARTIDDVPERLSPSDDYPVPEVLEVRGEVFFR 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
             DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    HGLG T       
Sbjct: 177 VADFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHTQGFRPAS 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            ++    +R  G PV+      N   G+    +     R  + ++IDG+V KVDE +LQ+
Sbjct: 237 LHQAYLALRAWGLPVSEHTTLVNDMAGVQERIDYWGEHRHEVDHEIDGVVIKVDEVALQR 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ +  ATL
Sbjct: 297 RLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVAQATL 356

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN   +K            + + +GD V++++AG+VIP+V+  +V+ R    + F  P+ 
Sbjct: 357 HNASEVKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFVMPTT 405

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + +  +      +  A  RC     C AQ  ER+ H  SR A +IE LG +    
Sbjct: 406 CPECGTVLAPE-----KEGDADIRCPNSQRCPAQLRERVFHVASRSALDIEVLGYEAAVA 460

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +    A  I    D+F L       T       G    +   L  +++K +   L R 
Sbjct: 461 LLQ----AGVIASEGDLFALTEDDLLRTELFRTKAGGLSANGKRLLANLDKAKAAPLWRV 516

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           + +L IRHVG   AR+LA  + + +  A                L  V  VG  IA A+ 
Sbjct: 517 LVALSIRHVGPTAARALATEFGTLEAIANA----------STEQLAAVEGVGPTIAAAVS 566

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           E++    +   V+             +++V   +    +V TG+L    R +A+E +   
Sbjct: 567 EWFTVDWHREIVDKWRAAGVRMADERDESVPRTLAGLTVVVTGSLAGFSRDEAKEAIVAR 626

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           G   +  +S+KT  ++ GD+PGSK +KA +LGV I++E+ F  LL Q      
Sbjct: 627 GGKAAGSVSKKTSYVVAGDSPGSKYDKAVELGVPILDEDGFRELLAQGPADPE 679


>gi|121594439|ref|YP_986335.1| DNA ligase [Acidovorax sp. JS42]
 gi|166215384|sp|A1W7N4|DNLJ_ACISJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120606519|gb|ABM42259.1| DNA ligase, NAD-dependent [Acidovorax sp. JS42]
          Length = 731

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 248/740 (33%), Positives = 381/740 (51%), Gaps = 81/740 (10%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++ +L ++++     YY    P + D+EYD   ++  A+  A+PDL     P+ P  ++ 
Sbjct: 22  KIKALREQLNRWAHEYYVQDTPSVPDAEYDRAFQQLQALEGAYPDLV---TPDSPTQRVL 78

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKDD-NSIFFTLEPKIDG 136
           G +   L  V H +P LS+    + E    + F  R+ R  +   D   + +  EPK DG
Sbjct: 79  GAVLDGLTPVRHRVPMLSIRTETDTEASGAQAFDARVRRELKLPPDAPPVEYVAEPKFDG 138

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +++RYE G+ V AA RGDG  GEDV+  +R I  IP  L   +P ++EVRGEVY+ + 
Sbjct: 139 LAMSLRYEGGRLVQAATRGDGEVGEDVTHNVRTIRQIPLSLPAGVPPVLEVRGEVYMRRA 198

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-----IF 250
           DF ALN+     G K + NPRNAA+G +R+L+      R L+FF +GLG+ +        
Sbjct: 199 DFDALNERQREKGDKTFVNPRNAAAGAVRQLDSGITAQRPLSFFAYGLGEVTPAAEGGPD 258

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               + MLQ+++  GFPV   V+ A     +++++  + + R  LPYDIDG+VYKV+  +
Sbjct: 259 FGTHFGMLQQLKEWGFPVAAQVQIAQGASELIAFHQRVGAERDALPYDIDGVVYKVNSLA 318

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG   R PRW ++HK+  ++  TR+  ID+Q+GRTG LTPVARL PV +GG  +TN
Sbjct: 319 LQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKLTPVARLAPVFVGGVTVTN 378

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV---------------- 414
           ATLHN   ++            + +RVGD+V+V+RAG+VIP+VV                
Sbjct: 379 ATLHNLFELRR-----------KKVRVGDQVIVRRAGDVIPEVVGVVPAGAGLAVLAGSD 427

Query: 415 ---------------DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT 459
                            +   R P    F  P  CPIC S VVR+           HRC+
Sbjct: 428 ALVDAASSADGTAPAQPLAGPRQPYVPNFRMPRQCPICGSAVVREPGE------VNHRCS 481

Query: 460 GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT 519
           GGL C AQ+ + + HF  R A +IEGLG++ +D           IR   D++ L      
Sbjct: 482 GGLFCPAQRKQAVLHFAQRRAMDIEGLGEKLVDQLVD----GHVIRTLPDLYRL------ 531

Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579
             + +  +    + S  N+ D+++K +  +L RF+F LGIRHVG   A+ LA+++     
Sbjct: 532 GLSSLAQLDRMAEKSAQNVLDALDKSKRTTLARFLFGLGIRHVGEATAKDLARHFGQLDA 591

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-R 638
                             L++V  VG ++A+AI  F+  P N   VE L           
Sbjct: 592 IMDA----------GVEQLLQVNDVGPVVAEAIHTFFAQPHNREVVEQLRACGVTWDESE 641

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
                +  +    +V TGTL  + R  A++ +   GA V+  +S+KT  ++ G + GSKL
Sbjct: 642 PAAAATLPLAGMTVVLTGTLPTLGRDAAKDLLESAGAKVAGSVSKKTHYVVAGADAGSKL 701

Query: 699 EKAQQLGVKIMNEEQFLFLL 718
            KAQ+LG+ +++E+    LL
Sbjct: 702 AKAQELGIPVLDEDGLHALL 721


>gi|148243508|ref|YP_001228665.1| NAD-dependent DNA ligase LigA [Synechococcus sp. RCC307]
 gi|166216253|sp|A5GWQ3|DNLJ_SYNR3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147851818|emb|CAK29312.1| NAD-dependent DNA ligase [Synechococcus sp. RCC307]
          Length = 675

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 217/711 (30%), Positives = 352/711 (49%), Gaps = 48/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            Q +   + L Q ++     YY    P   D+ YD L R    +    PDL      + P
Sbjct: 5   AQQQLRAAELRQLLNRAAHAYYVLDAPEFEDAVYDRLYRELLDLEQQHPDLL---SADSP 61

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GG        V H I  LSL+  +N E+L+ +  R+ R  +   +    +  E KI
Sbjct: 62  TQRVGGPPAEGFSSVEHRIGMLSLDNAFNAEELQAWDARLGRQLEDNPERQREYVCELKI 121

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYI 193
           DG  + + Y  G  V AA RGDG  GE+++A +R I  +P  L     P  +EVRGE +I
Sbjct: 122 DGNALALSYADGVLVRAATRGDGSRGEEITANVRTIQAVPLRLQLKQPPAWVEVRGEAFI 181

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-A 251
             + F A+N E    G   +ANPRNA +G LR+L+P     R L+FF + +   ++    
Sbjct: 182 PDDTFEAINAERQQRGEALFANPRNACAGTLRQLDPKAVAARRLDFFAYTVHLPADEMGP 241

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K Q++ LQ +   GF VN    + +   G+V++Y+  +  R  LPY  DG+V K+D    
Sbjct: 242 KSQWDALQWLETAGFRVNPHRERTSGADGVVAFYDRWEEQRHQLPYATDGVVVKLDALER 301

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+  G   ++PRW I+ K+A ++A +RLL +  Q+GRTG++TPVA  E V + G  ++ A
Sbjct: 302 QQLAGFTQKAPRWAIALKYAAEEAPSRLLRLVAQVGRTGVVTPVAEFEAVPLAGTSVSRA 361

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D ++ L           D+  GD ++V++AGE+IP+V+ ++   R   A+    P
Sbjct: 362 TLHNADRLEEL-----------DLHSGDTIVVRKAGEIIPEVLRVLPELRPEGAEQLELP 410

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP C S +VR+         AA RC    +C A     L+H+VSR A +++GLG + +
Sbjct: 411 SHCPECGSLLVRESGE------AATRCVNS-SCPAILRGALRHWVSRQAMDVDGLGGKLI 463

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +           +R  AD++ L      S      +   G+ S +NL +++   R     
Sbjct: 464 EQLVDR----GLVRSIADLYRLDAALLAS------LERMGEQSASNLIEALAASRQRPWH 513

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +++LGI H+G+  A++LA  + S++                  +L  +  +G  I+Q+
Sbjct: 514 RLLYALGIHHIGSVNAKTLAAAFPSWEALQSASE----------EALNELYGIGPEISQS 563

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQ 667
           + ++     N   +  L     P         S      +  + LV TGTL  + R +AQ
Sbjct: 564 MQQWCSTEANQSLMAELAALELPLASDDSSAESAGAIGALTGQTLVLTGTLPNLSRLEAQ 623

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             +   G  V+  +S+KT+ ++ G   GSKL+KA++LGV +++E +   LL
Sbjct: 624 ALIEAAGGKVTGSVSKKTNYVVAGSEAGSKLQKAEKLGVAVIDEAELKALL 674


>gi|325102906|ref|YP_004272560.1| DNA ligase, NAD-dependent [Pedobacter saltans DSM 12145]
 gi|324971754|gb|ADY50738.1| DNA ligase, NAD-dependent [Pedobacter saltans DSM 12145]
          Length = 670

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 212/711 (29%), Positives = 363/711 (51%), Gaps = 46/711 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S+ + ++++ +L  E++ H+  YYQ + P I D E+D   +  + +    P   R    
Sbjct: 1   MSLFEIKEKIDALVTELNRHNYNYYQLAMPTISDYEFDQKLKELEKLEQENPAFIRI--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GGE+  +   VTH  P LSL   +N +DL  F  RI +       ++  +  E
Sbjct: 58  DSPTQKVGGEITKTFKTVTHKWPMLSLGNTYNEQDLVDFDQRIRKIIG----DNFEYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
            K DG  I++ YE G  + A  RGDG  G++V+  I+ I TIP  +    I    E+RGE
Sbjct: 114 LKFDGLSISLTYENGDLIRAVTRGDGTKGDEVTTNIKTIRTIPHRIKGEGILPSFEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           V++ K  F  LN E I  G +P+ANPRN ASG ++  N  ++ +             +  
Sbjct: 174 VFMHKAAFEKLNQERIENGEQPFANPRNFASGTVKMQNSAEVAKRPLDCFLYFLYADKKP 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +E L  +   GF ++   +       +  +       R  L YDIDG+V KV+ ++
Sbjct: 234 FPTHWESLHAVEKWGFKISQESKLCKNLAEVFDFITYWDQERFKLSYDIDGIVIKVNSYA 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW IS+KF   +  T L+++  Q+GRTG +TPVA L+PV + G  +  
Sbjct: 294 QQEELGFTAKSPRWAISYKFKAAEVETELIEVTYQVGRTGAVTPVANLKPVLLAGTTVKR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN + I+ L           D+  GD VLV++ GE+IPK++ + +++R  DAQ   +
Sbjct: 354 ATLHNANEIERL-----------DLYEGDTVLVEKGGEIIPKIMGVNLDKRKSDAQKIHY 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            + CP C + +VR +        A H C     C  Q + +++HF+SR   NI+G+G + 
Sbjct: 403 ITHCPECGTELVRKVGE------AVHYCPNDEGCRPQIIGKMQHFISRKVMNIDGIGDET 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  +        IR  +DI+ L++ +      ++ +  FG+ SVTN+   I   + +  
Sbjct: 457 IETLYSK----GFIRHISDIYNLKQDED----SLKQMDRFGEKSVTNMLLGIENSKQMPF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIR+VG  +A+ LA ++ + QN               +  LI    +G+ IAQ
Sbjct: 509 EKVLFGLGIRYVGETVAKKLALHFKNIQNLQHA----------SFEQLIEAEEIGERIAQ 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQE 668
           +I+E++ +  +I  +  L+          ++ +  S  +  +  + +G  +   R + ++
Sbjct: 559 SILEYFSDETHINEINKLITYGLQFEIEEKEVILQSESLLGQTFLISGVFENHSREELKK 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            +   G  + + +S K + ++ GDN G SKLEKA +L + I++E+    LL
Sbjct: 619 IIEDNGGKMLSSISAKLNYLVAGDNMGPSKLEKANKLNIPIISEQDLFNLL 669


>gi|330995784|ref|ZP_08319681.1| DNA ligase [Paraprevotella xylaniphila YIT 11841]
 gi|329574514|gb|EGG56079.1| DNA ligase [Paraprevotella xylaniphila YIT 11841]
          Length = 669

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 212/709 (29%), Positives = 351/709 (49%), Gaps = 49/709 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++++  L  E+  H+  YY  + P I D E+D + R    +  A P+    +DP+ P 
Sbjct: 4   EVKEQIERLRSELHRHNYNYYVLNAPEISDQEFDRMMRELQDLEAAHPEF---DDPDSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N    +V H  P LSL   +N +++  F  R+       +        E K D
Sbjct: 61  RRVGSDLNQEFVQVPHRYPMLSLSNTYNKQEVADFYERVRSGL---EGEPFEICCEMKYD 117

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194
           G  I++ YE+G+ V A  RGDG  G+DV+  ++ I  IP  L+ N  PE  E+RGE+ + 
Sbjct: 118 GLSISLTYEQGRLVRAVTRGDGVQGDDVTENVKTIRCIPLRLNGNGYPEEFEIRGEILMP 177

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
              F ALN E        +ANPRNAASG L+  N   + +              +   G 
Sbjct: 178 WTSFEALNREREEREEPLFANPRNAASGTLKSKNSAVVAQRKLDAYLYYLLGEHVPFDGH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ     GF ++ G+++  T  GI  + +     R  LP   DG+V KV+    Q+ 
Sbjct: 238 YENLQAACSWGFKISGGMKKVTTLQGIYDFIDYWDVERKNLPVATDGIVLKVNSQRQQRA 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA ++PV + G ++  ATLH
Sbjct: 298 LGYTAKSPRWAIAYKFQAERARTRLNAVTFQVGRTGTVTPVANMDPVQLAGTVVRRATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QPFSFPSF 433
           N D ++ L           D+ +GD V V++ GE+IPK+V + ++ R  +      F + 
Sbjct: 358 NADVMEQL-----------DLHIGDMVYVEKGGEIIPKIVGVDIDARGAETGPRAEFITR 406

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + +VR          AA  C    AC  Q   R++H++SR A NI+ LG + +D 
Sbjct: 407 CPECGAELVRYEGE------AAWYCPNDTACPPQIKGRIEHYISRRAMNIDSLGPETVDD 460

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           +++       IR  AD++ ++  Q           G  + S   +  SI     +  ER 
Sbjct: 461 YYRR----GLIRDVADLYDIRVEQING-------DGTREKSAQKIVRSIADSVEVPFERV 509

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LGIR VG   A++LA+++ S    +                ++++  +G +IA++++
Sbjct: 510 VFALGIRFVGEIAAKALARHFKSMDALSSA----------SLEDMLQINGIGVVIAESVI 559

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVT 671
            ++ N  N   V  L ++        E+  S   ++  + +V +G      R + +  + 
Sbjct: 560 RYFANEANHDLVRRLREKGVRMELSDEELSSHSDKLSGQSIVVSGVFSLHSRDEYKAMIE 619

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           Q G      +S KT  ++ G N G +KLEKA +LG+ I++EE+FL  ++
Sbjct: 620 QHGGKNVGSISSKTSFVLAGANMGPAKLEKAGKLGIPILSEEEFLKKIE 668


>gi|229493359|ref|ZP_04387148.1| DNA ligase, NAD-dependent [Rhodococcus erythropolis SK121]
 gi|229319675|gb|EEN85507.1| DNA ligase, NAD-dependent [Rhodococcus erythropolis SK121]
          Length = 700

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 219/723 (30%), Positives = 355/723 (49%), Gaps = 42/723 (5%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR++ + L +E+  H   YY    P+I D  +D L  + +A+   +PDL     P+ 
Sbjct: 12  PNEAREQWTELAEEVRQHQFRYYVRDAPVISDGAFDTLLGQLNALEEQYPDL---RTPDS 68

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +GG        V H    LSL+ +++  +LR +I ++     ++    + +  E K
Sbjct: 69  PTQLVGGGFATDFTSVDHLERMLSLDNVFDESELRAWIAKVE----QETGPELHYLCEVK 124

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRG 189
           IDG  + + YE GK V AA RGDG +GE V+     I  IP  L+      IP ++EVRG
Sbjct: 125 IDGVALNLVYENGKLVRAATRGDGRTGELVTLNALTINDIPERLTATDEYPIPSLLEVRG 184

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EV+    DF ALN  ++  G+ P+ANPRN+A+G LR+ NP     R L    HG G+   
Sbjct: 185 EVFFRLEDFAALNASLVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGFGRMEG 244

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                QY+    +   G PV+    +      +V         R  + ++IDGLV KVDE
Sbjct: 245 FEPASQYDAYVALAAWGLPVSTHTSRVVGADAVVEKMKYWGEHRHDVEHEIDGLVVKVDE 304

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SL ++LG  +R+PRW I++K+  ++ +T+LLDI + +GRTG +TP A +EPV + G+ +
Sbjct: 305 MSLHRRLGTTSRAPRWAIAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVTVAGSTV 364

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN   +K            + + +GD V++++AG+VIP+V+  + + R    + F
Sbjct: 365 SLATLHNGSEVKR-----------KGVLIGDTVVLRKAGDVIPEVLGPVADVRDGTEREF 413

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C + +         +     RC     C AQ  ER+ H   R AF+IE LG 
Sbjct: 414 VMPTHCPECGTLLA-----PAKEGDVDVRCPNQQYCPAQLRERVFHVSGRGAFDIEVLGY 468

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +      +++     I    D+F+L   +           G    +   L  +++  ++ 
Sbjct: 469 EAATGLLEAK----VIGDEGDLFSLDAEKLIEVPIFRTNAGSLSANGKRLLANLDSAKDK 524

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L R + +L IRHVG   AR+LA  + S Q   +               L  V  VG  I
Sbjct: 525 PLWRVLVALSIRHVGPTAARALAGEFGSLQRIREA----------SVDELAAVDGVGSTI 574

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A A+VE++    +   V+             + ++   +E   +V TG+L+   R +A+E
Sbjct: 575 AAAVVEWFSVDWHQQIVDKWASAGVRMEDERDDSIPRNLEGLSIVVTGSLETYSRDQAKE 634

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIH 728
            +   G   +  +S+KT  ++VG+ PGSK +KA +LGV +++E+ F  LL+     +   
Sbjct: 635 AILVRGGKAAGSVSKKTAFVVVGEAPGSKHDKAVELGVPVLDEDGFRRLLEDGPDAVAPT 694

Query: 729 DDD 731
           D D
Sbjct: 695 DLD 697


>gi|312870519|ref|ZP_07730638.1| DNA ligase (NAD+) [Lactobacillus oris PB013-T2-3]
 gi|311093981|gb|EFQ52306.1| DNA ligase (NAD+) [Lactobacillus oris PB013-T2-3]
          Length = 679

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 233/722 (32%), Positives = 372/722 (51%), Gaps = 49/722 (6%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
            +  P++ L++  A++E++ L +++      YY+   P + D  YD   +R   +   FP
Sbjct: 2   DKPTPVDQLTLAAAKQEIAPLREQLIKWGQEYYEQDNPSVEDYVYDRAYQRLVELEQRFP 61

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           +L  S   + P   +GG     L KVTH IP LS+  +++I++L  F  R          
Sbjct: 62  ELKTS---DSPTQHVGGGPTSELTKVTHEIPMLSMGDVFSIDELMDFNQRQQD--NGDVS 116

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
            +  + LE KIDG  +++ YE G+ V  + RG+G+ GEDV+A +  I +IP  L   +  
Sbjct: 117 VTPEYNLELKIDGLSLSLVYENGRLVQGSTRGNGNIGEDVTANVMTIKSIPHQLPEPLS- 175

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E RGE Y+ K  F+ LN E  A G   +ANPRNAA+G LR+L+P     R L  F++ 
Sbjct: 176 -LEFRGECYMPKESFVKLNQEREAAGLSVFANPRNAAAGSLRQLDPQVTARRDLATFMYY 234

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           + +  ++  + Q   L +MR LGF VN   R  +    I  Y  E  + R  L Y IDG+
Sbjct: 235 VPEYQKLGVRTQAAALDRMRELGFSVNPHNRVVHNRQEITDYVEEYTAQRDQLSYGIDGI 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV++   +  LG   + PRW I++KF  ++ +T + DI   +GRTG +TP A ++PV 
Sbjct: 295 VEKVNDLDTENALGNTVKVPRWEIAYKFPPEEQATVVRDIVWTVGRTGNVTPTAVMDPVQ 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++ A+LHN DY+             +DIR+GD V + +AG++IP++  + + +R 
Sbjct: 355 LAGTTVSRASLHNPDYL-----------SEKDIRLGDTVYLHKAGDIIPEISRVDLKKRP 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D+QP+  P+ CP+C S +V   +        A RC   + C AQ  E L HF SR+A N
Sbjct: 404 ADSQPYQVPTTCPVCGSDLVHLDDE------VALRCVNPM-CPAQIKEGLAHFASRNAMN 456

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GLG + +   +  E     +   AD+++L   Q  +      +  FGD S  NL  SI
Sbjct: 457 IDGLGPKIIQQLWDKE----LVHDVADLYSLTHDQLLT------LDKFGDKSAANLLTSI 506

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              RN S+ER +F LGIRHVGA+ AR + +++ S                     +  V 
Sbjct: 507 ANSRNNSVERLLFGLGIRHVGAKAARLIMEHFQSLDRLLTA----------SADEVAAVD 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQ 659
            +G  I  ++  ++ N +    V+ L                   SE   +++V TG L+
Sbjct: 557 GIGPTIGDSVQTYFANEQVKKLVDELRAVGVNFDYHGSVVPAATDSEWNGRRVVLTGKLE 616

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ R  A+ ++   GA V+  +S+KTDI+I G   GSKL KAQ LG+ + +E +F   ++
Sbjct: 617 ELTRADAKHWLEAHGAKVTGSVSKKTDIVIAGTAAGSKLTKAQDLGITVWDEARFAQAMK 676

Query: 720 QY 721
           + 
Sbjct: 677 EE 678


>gi|309812136|ref|ZP_07705894.1| DNA ligase (NAD+) [Dermacoccus sp. Ellin185]
 gi|308433823|gb|EFP57697.1| DNA ligase (NAD+) [Dermacoccus sp. Ellin185]
          Length = 770

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 213/720 (29%), Positives = 349/720 (48%), Gaps = 51/720 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            +  R   + L ++I  H   YY    P I D EYD L R    +  ++P+L     P  
Sbjct: 22  PDAVRHRAAELTEQIDGHQFAYYVKDAPTISDGEYDELLRELQGVEESYPEL---RSPES 78

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG  +     V H    LSL+  ++ E+L ++  R+ R    + + S  +  E K
Sbjct: 79  PTQRVGGTYSTEFTAVDHVERMLSLDNAFSPEELAEWGDRVVR----EANTSFHYLCELK 134

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           IDG  I + YE GK V    RGDG +GEDV+  +R I  IP  L  +  P+++E+RGEV+
Sbjct: 135 IDGLAINLLYENGKLVRGVTRGDGRTGEDVTLNVRTIQGIPLELHGDDLPQLVEIRGEVF 194

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251
               +F ALN  ++  G+ P+ANPRNAA+G LR+ +P     R L   VHG+G  +    
Sbjct: 195 FPVKEFEALNASLVEEGKSPFANPRNAAAGSLRQKDPAKTAKRPLRMLVHGIGARTGFDI 254

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E  + +   G P +      +T   +  +       R ++ ++IDG+V KVDE ++
Sbjct: 255 TRQSEAYELLADWGLPTSPYAEVLDTMDEVQKFVAHYGEHRHSVTHEIDGVVVKVDEIAV 314

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  +R+PRW I++K+  ++ +T+LLDI++ +GRTG +TP   ++PV + G+ ++ A
Sbjct: 315 QRALGATSRAPRWAIAYKYPPEEVNTKLLDIEVNVGRTGRVTPFGMMQPVKVAGSTVSMA 374

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP++V  +V  R  D + F  P
Sbjct: 375 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEIVGPVVEARTGDEREFVMP 423

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +  +      +     RC  G  C +Q  ERL    SR AF+IE LG +  
Sbjct: 424 THCPACGTELAYER-----EGNKDIRCPNGRTCPSQLRERLFSLASRGAFDIEALGWEGA 478

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL------------GFGDVSVTNLY 539
               +S      +   + +F L             +                  +   L 
Sbjct: 479 ISLLES----GVLTDESTLFDLTYDDLARVPLYTRVAKKSDPEAKVRDGRIVSATGEKLL 534

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            ++   +   L R I +L IRHVG   AR+LA  + S                 D  +L 
Sbjct: 535 ANLEVAKTQPLWRVIVALSIRHVGPTAARALATQFGSIDAIRDA----------DEATLA 584

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
               VG +IA +I E++    +   V              ++++   +    +V TG+L+
Sbjct: 585 ATDGVGAVIAHSIKEWFAVDWHENIVAGWAASGVRMEDERDESIEQTLAGLTIVATGSLE 644

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R   +E +   G   S  +S+KTD +++G+N GSK  KA++LG++I++E QF  LL+
Sbjct: 645 NFTRDGVKEAIIARGGKASGSVSKKTDYVVLGENAGSKATKAEELGLRILDEAQFTRLLE 704


>gi|332291077|ref|YP_004429686.1| DNA ligase, NAD-dependent [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169163|gb|AEE18418.1| DNA ligase, NAD-dependent [Krokinobacter diaphorus 4H-3-7-5]
          Length = 664

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 219/710 (30%), Positives = 360/710 (50%), Gaps = 51/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++IE+   ++ +L  E+  H+  YY    P I D ++D   ++ +A+  A P+    +DP
Sbjct: 1   MTIEE---QILALRNELQSHNHSYYVLDTPTISDFDFDQKLKQLEALEAAHPEF---DDP 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P +++GG +  +   + H     SL+  ++ EDL  +  R+ +      D  + +T E
Sbjct: 55  NSPTHRVGGAVTKNFETIVHENRMYSLDNSYSKEDLEDWEARVKKMV----DGEVNYTCE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I++ YE G+ + A  RGDG  G+DV+  I+ I ++P  L  + PE  ++RGE+
Sbjct: 111 LKYDGASISLTYENGELLKAVTRGDGLQGDDVTTNIKTIKSVPLKLKGDYPEKFDIRGEI 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
            +    F A+N E   +G + Y NPRN ASG L+  +  ++ R     +      + +  
Sbjct: 171 VLPWEGFHAMNAEREELGFELYRNPRNTASGSLKLQDSAEVARRPLQCLLYNITGNNLGI 230

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q + LQK R  GF V    + A     ++ + N     R  LPY+ DG+V KV+    
Sbjct: 231 ATQMDSLQKARDWGFRVPEAAKLAKNIDEVLEFINHWDVARRDLPYETDGVVVKVNGLQQ 290

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  A++PRW +++KF  +Q STRL +I  Q+GRTG +TPVA LEPV + G  +  A
Sbjct: 291 QEELGYTAKAPRWAMAYKFKAEQVSTRLREITYQVGRTGAITPVANLEPVELAGTTVKRA 350

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN D I+ L           DIR GD V V++ GE+IPK++ + + +R  D++P ++ 
Sbjct: 351 SLHNADQIERL-----------DIREGDEVFVEKGGEIIPKIIAVDLTKRPADSEPTTYI 399

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +VR          A H C   + C  Q + R++H++SR A +I+GLG + +
Sbjct: 400 TECPECSTPLVRKEGE------AQHYCPNDMGCPTQIIGRIQHYISRKAMDIDGLGGETV 453

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                       I   AD++ L   Q      +  +      S  NL   +     I  E
Sbjct: 454 ALLVNE----GLIVNYADLYELTVAQ------LLPLERMAQKSAENLVSGVQASVQIPFE 503

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +F LGIR+VG  +A+ LAK+Y S                     L+ V  +G  IA++
Sbjct: 504 KVLFGLGIRYVGETVAKKLAKHYKSIDAIISATE----------EELVAVDEIGSKIAES 553

Query: 612 IVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++ F+    +I  +E L               N S ++     V +G  + + R++ ++ 
Sbjct: 554 VMAFFAKAEHITLIERLRSYGVQLEISAEKLANQSDKLAGYIFVVSGVFE-MPRNELKKL 612

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           +   G  VS+ +S KT  ++ GD  G SKLEKA+ LGV I++EE+FL L+
Sbjct: 613 IEDNGGKVSSSISSKTTYVVAGDKMGPSKLEKAESLGVTIISEEEFLNLV 662


>gi|257869253|ref|ZP_05648906.1| NAD-dependent DNA ligase [Enterococcus gallinarum EG2]
 gi|257803417|gb|EEV32239.1| NAD-dependent DNA ligase [Enterococcus gallinarum EG2]
          Length = 676

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 225/710 (31%), Positives = 371/710 (52%), Gaps = 53/710 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + ++    L   ++ +   YY   +P + D  YD L +    +   +P L      + P 
Sbjct: 7   EVQQRAEELRTTLNQYAYEYYVKDQPSVEDYVYDRLYKELVQLETDYPQLV---TEDSPT 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +     KV H IP  SL  +++ E++  F  R+ +   +    ++ +  E KID
Sbjct: 64  QRVGGIVLPGFEKVIHDIPLYSLNDVFDKEEIIAFDARVQKALGR----AVDYVCELKID 119

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I+++YE G+FV  A RGDG  GE+++  ++ + +IP  L   +   +EVRGE Y+ K
Sbjct: 120 GLSISLKYENGRFVRGATRGDGTVGENITENLKTVKSIPLKLKEPVS--LEVRGECYMPK 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254
             F+ LN      G + +ANPRNAA+G LR+L+     +R L+ F++ L     I A  Q
Sbjct: 178 ASFIRLNQVREEEGLEVFANPRNAAAGSLRQLDTRIAASRNLSTFLYTLADFGPIEAHDQ 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +  L ++  LGF  N+  R   T   + +Y  E    RS LPY+IDG+V KV++FS Q  
Sbjct: 238 FSALDELDSLGFRTNHERRLCRTIDEVWAYIEEFHEKRSELPYEIDGVVIKVNDFSDQDT 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   ++PRW  ++KF  ++A T + +I+  +GRTG++TP A + PV + G  ++ A+LH
Sbjct: 298 LGFTVKAPRWAAAYKFPPEEAETTIEEIEWTVGRTGVVTPTAVMTPVRVAGTTVSRASLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N DYI+            +DIR+ D V++ +AG++IP+V +++ ++R   ++P+  P+ C
Sbjct: 358 NVDYIR-----------AKDIRLNDSVIIYKAGDIIPEVANVLTDKRSKASEPYPIPTHC 406

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC S +V            A RC     C AQ  E L HFVSR+A NIEGLG + L+  
Sbjct: 407 PICDSELVHLDEE------VALRCINPK-CPAQMKEGLSHFVSRNAMNIEGLGPRVLEQM 459

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       +   AD++ L   Q  +      +    + S  N+  +I   +  S+ER I
Sbjct: 460 YEK----HLVADVADLYYLTEEQLLT------LDKIKEKSANNILSAIEASKENSVERLI 509

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LGIRHVG++ AR LA++Y + +N ++           D   ++ +  +G  IA ++V 
Sbjct: 510 FGLGIRHVGSKAARILAEHYRNLRNLSKA----------DESEIVSLETIGQTIADSVVT 559

Query: 615 FYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++ N      ++ L K                 + S  + K +V TG L    R +A+E 
Sbjct: 560 YFNNEEVHDLLDELEKAGVNFDYLGLKNEELSAIDSPFKGKTVVLTGKLTHFTREEAKER 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  LG  V+  +S+KTDI++ G+  GSKL KAQ LG+ +  E Q +  ++
Sbjct: 620 IENLGGKVTGSVSKKTDIVVAGEEAGSKLTKAQSLGITVWEENQMVAAIE 669


>gi|302554316|ref|ZP_07306658.1| DNA ligase, NAD-dependent [Streptomyces viridochromogenes DSM
           40736]
 gi|302471934|gb|EFL35027.1| DNA ligase, NAD-dependent [Streptomyces viridochromogenes DSM
           40736]
          Length = 731

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 219/737 (29%), Positives = 356/737 (48%), Gaps = 62/737 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR++ + L ++I  H   YY    P++ D+E+D L R  +A+   +P+L     P+ 
Sbjct: 13  PAEAREKHARLAEQIEEHRFRYYVKDAPVVSDAEFDQLLRSLEALEDEYPEL---RTPDS 69

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G        V H    LSL+  +N E+L  +  RI R   ++D +   F  E K
Sbjct: 70  PTQKVAGAYATEFTAVEHRERMLSLDNTFNEEELAAWAERIARELGEQDYH---FLCELK 126

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG +GED++  +R I  IP  L  +  P+++E+RGEVY
Sbjct: 127 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPERLKGDRVPDLVEIRGEVY 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF- 250
                F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G       
Sbjct: 187 FPMEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGALEGFTG 246

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                +    +   G P +   R  +   G++ +       R ++ ++IDG+V K+DE  
Sbjct: 247 LTRLSQAYDLLGTWGLPTSRHNRVVDGLEGMLEFIAHYGENRHSVEHEIDGVVVKLDEIP 306

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +R+PRW I++K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ +  
Sbjct: 307 LQGRLGSTSRAPRWAIAYKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVAGSEVEF 366

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+D +K            + + +GD V++++AG+VIP+++  + + R    + F  
Sbjct: 367 ATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVM 415

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK-- 488
           P+ CP C + +         +     RC     C AQ  ERL +   R A +IE  G   
Sbjct: 416 PAECPECGTALRPM-----KEGDVDLRCPNARTCPAQLRERLFYLAGRKALDIEHFGYVA 470

Query: 489 ----------------QQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTK-----IE 525
                            + D F  + D    I+         L +R   +  +       
Sbjct: 471 AAALTAPLEPKDPPLVDEGDLFDLTIDQLLPIKAYVLDPDSGLPKRDPKTGEEKVATIFA 530

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
           N  G    +   + ++I   +   L R I SL IRHVG   A +LA+ + S +   Q   
Sbjct: 531 NQEGNPRKNALAMLENIAAAKERPLARIITSLSIRHVGPVAAEALAREFRSIERIDQATE 590

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNV 643
                       L     VG  IA ++ +++    +   +                E   
Sbjct: 591 ----------EELAVTEGVGPTIAASLKQWFAEDWHREIIRKWKAAGVRMEAESTGEDEG 640

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGD+PGSK +KA Q
Sbjct: 641 PRPLEGLTVVVTGTLEHFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDSPGSKYDKAMQ 700

Query: 704 LGVKIMNEEQFLFLLQQ 720
           L V ++NE+ F  LL+Q
Sbjct: 701 LKVPVLNEDGFGVLLEQ 717


>gi|118470314|ref|YP_886705.1| NAD-dependent DNA ligase LigA [Mycobacterium smegmatis str. MC2
           155]
 gi|166216211|sp|A0QUW7|DNLJ_MYCS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118171601|gb|ABK72497.1| DNA ligase, NAD-dependent [Mycobacterium smegmatis str. MC2 155]
          Length = 701

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 224/730 (30%), Positives = 352/730 (48%), Gaps = 47/730 (6%)

Query: 1   MKKRQLIPIEALSIE----QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCD 56
           M ++    +EA   E      R+    L  E+  H   YY    PII D+E+D L R   
Sbjct: 1   MSEKATGEVEAELPEHPDADERRRWQELADEVREHQFRYYVKDAPIISDAEFDKLLRELQ 60

Query: 57  AIAHAFPDLARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY 115
           A+  A P+L     P+ P   +GG           H    LSL+ +++ ++L  +  RI 
Sbjct: 61  ALEDAHPEL---RTPDSPTQLVGGAGFATEFAPAEHLERMLSLDNVFDSDELTAWAARIS 117

Query: 116 RFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175
                       F  E KIDG  +++ Y  G+    A RGDG +GEDV+   R I  IP 
Sbjct: 118 SETGDAAH----FLCELKIDGVALSLVYRDGRLERGATRGDGRTGEDVTLNARTIDDIPE 173

Query: 176 VLS----LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT- 230
            L+      +P ++EVRGEV+    DF  LN  ++A G+ P+ANPRN+A+G LR+ NP  
Sbjct: 174 RLTPSDEFPVPAVLEVRGEVFFRVADFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPAV 233

Query: 231 DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290
              R L    HG+G T        ++  + +   G PV+    + +T   +         
Sbjct: 234 TARRKLRMICHGIGYTEGFTPASLHDAYRALGAWGLPVSEHTTKVSTVAEVAERIAYWGE 293

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
            R  + ++IDG+V KVDE +LQ++LG  +R+PRW +++K+  ++A+T+LLDI + +GRTG
Sbjct: 294 HRHDVEHEIDGVVVKVDEVALQRRLGATSRAPRWAVAYKYPPEEATTKLLDIRVNVGRTG 353

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TP A +EPV + G+ +  ATLHN   +K            + + +GD V++++AG+VI
Sbjct: 354 RVTPFAYMEPVKVAGSTVGLATLHNASEVKR-----------KGVLIGDTVVIRKAGDVI 402

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P+V+  +V+ R    + F FP+ CP C + +         +  A  RC    +C AQ  E
Sbjct: 403 PEVLGPVVDLRDGTEREFEFPTHCPECGTELA-----PAKEGDADIRCPNSRSCPAQLRE 457

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
           RL H   R AF+IEGLG +           A  I    D+FTL       T       G 
Sbjct: 458 RLFHLAGRGAFDIEGLGYEAATALL----AAQVIPDEGDLFTLTADDLLRTELFTTKKGE 513

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
              +   L  ++ K +   L R + +L IRHVG   AR+LA  + S +         +A 
Sbjct: 514 LSANGKRLLANLTKAKEQPLWRVLVALSIRHVGPTAARALATEFGSLEAIEAASEEELAA 573

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
                        VG  IA A+ +++    +   V+             + ++   +E  
Sbjct: 574 VE----------GVGPTIAAAVKDWFTVDWHRAIVDKWRAAGVRMADERDASIERTLEGL 623

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG+L    R +A+E +   G   +  +S+KT  ++ GD PGSK +KA +LGV +++
Sbjct: 624 SIVVTGSLAGFSRDQAKEAIIARGGKAAGSVSKKTAYVVAGDAPGSKYDKAVELGVPVLD 683

Query: 711 EEQFLFLLQQ 720
           E+ F  LL+Q
Sbjct: 684 EDGFRRLLEQ 693


>gi|270296700|ref|ZP_06202899.1| DNA ligase, NAD-dependent [Bacteroides sp. D20]
 gi|270272687|gb|EFA18550.1| DNA ligase, NAD-dependent [Bacteroides sp. D20]
          Length = 665

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 229/707 (32%), Positives = 360/707 (50%), Gaps = 50/707 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L  E+  H+  YY  + P I D E+D L R    +    P+    +D N P  
Sbjct: 3   VKEKIDQLRAELHQHNYNYYVLNAPEISDKEFDDLMRELQDLEKEHPEY---QDDNSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +      +       E K DG
Sbjct: 60  RVGSDLNKNFTQVAHKYPMLSLGNTYSENEVTDFYERVKKAL----NEDFEICCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE GK V A  RGDG  G+DV+  ++ I TIP VL  + P+  E+RGE+ +   
Sbjct: 116 TSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGDYPKSFEIRGEILMPWV 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F  LN E  A     +ANPRNAASG L+  N T +               E+   G YE
Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSTIVASRKLDAYLYYLLGEELPCDGHYE 235

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ     GF  +   R+A++   +  Y N   + R  LP   DG+V K++    QK LG
Sbjct: 236 NLQAAASWGFKTSEHTRKAHSLEEVFEYINYWDTERKNLPVATDGIVLKINSLRQQKNLG 295

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN 
Sbjct: 296 FTAKSPRWAIAYKFQAERALTRLNRVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHNA 355

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435
           D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F + CP
Sbjct: 356 DIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSMLIGEKVKFITHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F+
Sbjct: 405 ECGSKLIRFEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I+  AD++ L+     +      +   G+ S  N+ + I   + +  ER +F
Sbjct: 459 R----LGLIKDTADLYQLKTDDIKN------LERMGEKSAENIVNGIAASKEVPFERVLF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ +AK +   +               D   L  +  +G+ IAQ+I+ +
Sbjct: 509 ALGIRFVGETVAKKIAKSFTDIEELENA----------DLEKLKNIDEIGEKIAQSIITY 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           + NP N   VE L       + R E+++S    ++  + +V +G      R + +E + +
Sbjct: 559 FSNPVNRELVERLKSNG-LQLHRTEEDLSGYTDKLAGQSIVISGVFTHHSRDEYKEMIEK 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G      +S KT  I+ G+N G +KLEKAQ+LGVKIM+E++FL L+
Sbjct: 618 NGGKNVGSISSKTSFILAGENMGPAKLEKAQKLGVKIMSEDEFLALI 664


>gi|304384418|ref|ZP_07366824.1| NAD-dependent DNA ligase LigA [Prevotella marshii DSM 16973]
 gi|304334516|gb|EFM00803.1| NAD-dependent DNA ligase LigA [Prevotella marshii DSM 16973]
          Length = 680

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 220/706 (31%), Positives = 348/706 (49%), Gaps = 48/706 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L +++  H+  YY  + P I D E+D +      +    P+    +DPN P  +
Sbjct: 19  KARIEQLRRDLHAHNYKYYVLNAPTIGDQEFDEMMHELQRLETLHPEW---DDPNSPTQR 75

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G +++    +V H  P LSL   +N +D+ ++   + +      D       E K DG 
Sbjct: 76  VGSDLSTGFAQVKHRYPMLSLSNTYNEQDVAEWYESVRKGLN---DEDFEVCCEMKYDGL 132

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196
            I++ Y  G+ V    RGDG  G+DV+A +R I  IP VL     P   E+RGE+ +   
Sbjct: 133 SISLTYVDGRIVQGVTRGDGVQGDDVTANVRTIHAIPLVLPGTGYPHEFEIRGEILMPWA 192

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F  LN E  A     +ANPRNAASG L+ L+P  +                + A G YE
Sbjct: 193 VFEQLNKEREAAEEPLFANPRNAASGTLKSLDPALVATRRLDAYLYYLLGETLPADGHYE 252

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L      GF ++ G+++  T   I ++     S R  LP   DG+V KV+    Q+ LG
Sbjct: 253 NLMAAASWGFKISAGMKKVRTLEEIYAFIRYWDSERKNLPVATDGIVLKVNSLRQQRALG 312

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++A TRL ++  Q+GRTG +TPVA +EPV + G  +  ATL+NE
Sbjct: 313 FTAKSPRWAIAYKFKAERACTRLNEVTYQVGRTGAVTPVANMEPVQLAGTTVKRATLNNE 372

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I+             D+ +GD V V++ GE+IPK+V +    R  DA P  F + CP 
Sbjct: 373 DFIRSF-----------DLHLGDYVYVEKGGEIIPKIVGVDTTRRLADALPVHFITVCPE 421

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + +VR          AAH C   ++C  Q   R++HF++R A NIE LG + +D +++
Sbjct: 422 CGTSLVRYEGE------AAHYCPNDVSCPPQVKGRIEHFIARKAMNIESLGPETVDEYYR 475

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  IR  AD++ ++  Q           G  + S   +   I + +N+  ER +F+
Sbjct: 476 R----GLIRNIADLYEIRTEQING-------DGSREKSAQRVVAGIAQSKNVPFERVVFA 524

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG   AR LA+ + +     +               L+++  VG  IA ++V ++
Sbjct: 525 LGIRFVGETSARLLARRFKNIDALMEA----------SPDELMQIEGVGMSIANSVVGYF 574

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +NP N   VE L           ++       +  K +V +G      R + +  + Q G
Sbjct: 575 RNPVNREIVERLRGYGLQMALSADEMTGMTDRLAGKTVVISGVFSHHSREEYKRMIEQNG 634

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
              +  +S KT  I+ GD+ G SKLEKA++LGV +++EE FL +++
Sbjct: 635 GKNTGSISSKTSFILAGDHMGPSKLEKAEKLGVPVIDEETFLSMIE 680


>gi|116669859|ref|YP_830792.1| DNA ligase, NAD-dependent [Arthrobacter sp. FB24]
 gi|166215392|sp|A0JUH2|DNLJ_ARTS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116609968|gb|ABK02692.1| DNA ligase, NAD-dependent [Arthrobacter sp. FB24]
          Length = 790

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 217/735 (29%), Positives = 362/735 (49%), Gaps = 61/735 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            R+E  +L +E+  H   YYQ   PII D+E+D L RR + I    P+L  +   + P  
Sbjct: 51  VREEYENLVEEVRKHRFAYYQEDAPIISDAEFDELFRRLETIEAMHPELVAN---DSPTQ 107

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--IFFTLEPKI 134
           ++GGE++ +   V H     SLE ++++E+L  +I +      K  + +    +  E KI
Sbjct: 108 EVGGEVSAAFAAVEHLQRMYSLEDVFSLEELESWIAKAEASVAKLGNGTAGPAWLTELKI 167

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYI 193
           DG  + + Y  GK V AA RGDG++GED++  +  I  IP+     N P  +EVRGEV+I
Sbjct: 168 DGLAVNLLYRDGKLVRAATRGDGYTGEDITHNVLTIKEIPQQLTGGNYPAEMEVRGEVFI 227

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAK 252
               F   N+ +I  G+ P ANPRNAA+G LR+ +P +   R L  +VHG+G    +   
Sbjct: 228 PSKAFAEYNEALIEAGKAPLANPRNAAAGSLRQKDPAETAKRPLRMYVHGIGAREGLRTV 287

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q +  +++   G P +       +   I+ +       R +L ++IDG+V KVD+F+ Q
Sbjct: 288 SQSDTYRQLAEWGLPTSPYFEVLGSLKDILDFIKRYGDKRHSLTHEIDGIVVKVDDFATQ 347

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  +R PRW +++K+  ++  T+LLDI + +GRTG +TP   +EPV + G+ +  AT
Sbjct: 348 RALGYTSRVPRWAVAYKYPPEEVHTKLLDIAVNVGRTGRVTPFGIMEPVKVAGSTVGMAT 407

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---PDAQPFS 429
           LHN+D +K            + +++GD V++++AG+VIP++V  ++  R    P  + F 
Sbjct: 408 LHNQDVVK-----------AKGVKIGDIVVLRKAGDVIPEIVGPVLALRDQQDPPVRDFV 456

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +         +     RC    +C AQ  ER+ H  SR AF+IE LG +
Sbjct: 457 MPTECPACGTPLA-----PGKEGDVDIRCPNSRSCPAQLRERVFHVASRGAFDIEALGWE 511

Query: 490 QLDFFFKSEDP-AFSIRIPADIFTLQRRQ------------------------QTSTTKI 524
                 +  +P    +   A++F L R                             T   
Sbjct: 512 AAIALTQPAEPVTPPLTSEANLFRLTREDLADVRIRREKRSKGVATGEFELVPYFYTKGT 571

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
                    +   L+  + K ++  L R + +L IRHVG   +R+LA  + S     +  
Sbjct: 572 AKSPSKPTATTEKLFTELEKAKSQPLWRVLVALSIRHVGPRASRALATAFGSMDAIREAS 631

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
                        L  V  VG +IA A+ E++    +   V+   ++        +++  
Sbjct: 632 E----------EELAHVDGVGPVIAAALKEWFAEDWHREIVDTWAEDGVRMEDEQDESTP 681

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TG+L+   R +A+E +   G   S  +S+ T  ++ G+N G+KL+KA+QL
Sbjct: 682 RTLEGLTVVVTGSLEGFSRDEAKEAILIRGGKASGSVSKNTSYVVAGENAGTKLDKAEQL 741

Query: 705 GVKIMNEEQFLFLLQ 719
           GV +++E+ F  LL 
Sbjct: 742 GVPVLDEDGFRALLA 756


>gi|328954073|ref|YP_004371407.1| DNA ligase [Desulfobacca acetoxidans DSM 11109]
 gi|328454397|gb|AEB10226.1| DNA ligase [Desulfobacca acetoxidans DSM 11109]
          Length = 676

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 239/709 (33%), Positives = 380/709 (53%), Gaps = 48/709 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +     + L  +I YHD  YY    P I D+EYD L R  + +            P+ P 
Sbjct: 10  EIAARAARLRDQIHYHDYRYYVLDDPEISDAEYDLLFRELERLEEE---YPELVTPDSPT 66

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG        VTH  P LSLE  ++  ++++F  R+ RF  ++      + LEPK+D
Sbjct: 67  QRVGGGPAEKFESVTHRQPMLSLENAFSEGEVQEFEPRLKRFLHQQA--EFDYVLEPKMD 124

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVY 192
           G  + + YE G     A RGDGH GE+V+  +R I TIP   R  +   P  +EVRGEVY
Sbjct: 125 GVAVNLTYEDGLLAIGATRGDGHRGENVTQNLRTIKTIPLVLRRETTPAPAFLEVRGEVY 184

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           I   +F  LN    A G+  +ANPRNAA+G LR+L+P     R L  + +G+G+ +    
Sbjct: 185 IELAEFKKLNAAREAQGQPAFANPRNAAAGSLRQLDPAVTAGRPLKIYCYGIGEVAGREF 244

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              +E++Q ++  G  VN  V +       V+Y++ ++ +R  LPY+IDG+V KVD   L
Sbjct: 245 SSHWEVMQTLKTWGLRVNPYVDRCQGIEAAVAYHHRLEGLRHGLPYEIDGVVIKVDSLEL 304

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG ++RSPRW +++KFA  QA+T++  I +Q+GRTG +TP A + PV +GG  ++ A
Sbjct: 305 QTRLGIKSRSPRWALAYKFAATQATTQVRKIIVQVGRTGAVTPTAIMAPVEVGGVTVSRA 364

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED +             +D+R GD VL++RAG+VIP+VV +I + R    +PF  P
Sbjct: 365 TLHNEDEVAR-----------KDVREGDWVLIQRAGDVIPEVVKVITSRRTGREKPFKMP 413

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C + +VR          A  RC     CSAQ    ++HF S+ A +I+GLG++ +
Sbjct: 414 ERCPVCDTPLVRPQGE------AVTRCPNP-DCSAQLKRAIRHFASKGAMDIDGLGEKII 466

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +           ++  AD++ LQ            +  F + S  N+  +I   +  SL 
Sbjct: 467 EQLIDQ----GLVQDVADLYRLQASDL------LPLERFAEKSAQNIVQAIAGSKKPSLG 516

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFI++LGIR+VG   A  LA+++ +                     L+ +  +G  +A +
Sbjct: 517 RFIYALGIRYVGEATANLLARHFQTLNALKAA----------AVEDLLLIEGIGPQVAAS 566

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           I +++QNP+N   +  LL+  +       + +++ +  +  VFTG LQ++ R +A+  VT
Sbjct: 567 IRDYFQNPKNQALLAKLLQA-NLQPQAATQVLTTPLAGQTFVFTGRLQQLSRDEAKALVT 625

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             G  VS+ +S KTD ++VG +PG+K  +A +LG+ I++E  F  L+ +
Sbjct: 626 AQGGKVSSSVSAKTDYLVVGKDPGTKYAQALELGLTILDEAGFAQLIGR 674


>gi|300783591|ref|YP_003763882.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32]
 gi|299793105|gb|ADJ43480.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32]
          Length = 726

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 218/718 (30%), Positives = 348/718 (48%), Gaps = 43/718 (5%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
               R+  S+L +E+  H   YY    PII D ++D L      +  A P L     P  
Sbjct: 27  PADVRERHSALAEELRDHQFRYYVLDSPIISDGQFDELLGELQRLEDAHPALV---TPES 83

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG  +       H    LSL+ ++  ++   ++ R+ +   +       F  E K
Sbjct: 84  PTQRVGGTFSTEFTAHDHLERMLSLDNVFAEDEFLAWVERVEKEVGR-----TEFLAELK 138

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRG 189
           IDG  I + YE G    A  RGDG +GEDV+  +R +  +P+ L+       P ++EVRG
Sbjct: 139 IDGLAINLLYENGHLTRALTRGDGRTGEDVTLNVRTLDQVPQTLTGTDQFPVPALVEVRG 198

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EV+    DFL LN +M+  G+ PYANPRN A+G LR+ +P     R L    HGLGK + 
Sbjct: 199 EVFFRVEDFLELNAKMVEAGKPPYANPRNTAAGSLRQKDPKITRERRLRLICHGLGKRAG 258

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q E    +   G PV+   +   +   + ++       R    ++IDG+V KVD+
Sbjct: 259 FEPQRQSEAYDALAAWGLPVSPHSKVLTSADELTAHIAYWGEHRHDAEHEIDGVVIKVDQ 318

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG  +R+PRW I++K+  ++A T LLDI + +GRTG +TP A  EPV + G+ +
Sbjct: 319 VALQRRLGTTSRAPRWAIAYKYPPEEAITTLLDIQVGVGRTGRVTPFAVTEPVTVAGSTV 378

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN++ +K            + + +GDR+++++AG+VIP+V+  +V+ R  D + F
Sbjct: 379 SRATLHNQEEVKR-----------KGVLIGDRIVIRKAGDVIPEVLGPVVDARTGDEREF 427

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C + +         +     RC     C AQ  ERL H   R AF+IE LG 
Sbjct: 428 VMPTHCPECGTELAYQ-----KEGDKDIRCPNTRFCPAQLRERLFHLAGRGAFDIEVLGY 482

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +           A  +    D+F L               G    +   L  +++  ++ 
Sbjct: 483 EAAVALLD----ARVVADEGDVFDLNEDSLAEVELFRTKAGELSANARKLLSNLDAAKDR 538

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L + + +L IRHVG   A++LA+ + S +   Q               L  V  VG  I
Sbjct: 539 PLWKVLVALSIRHVGPTAAQALAREFGSIERIEQATE----------EELSAVDGVGPTI 588

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A A  E++    +   VE   +         ++++   +E   +V TG+L    R +A+E
Sbjct: 589 AHATQEWFDVAWHREIVEKWRRAGVRMEEARDESIPRHLEGLSIVVTGSLDGFSRDEAKE 648

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            V   G   +  +S+KT  ++VGD+PGSK +KA QL V +++E  F  LL+Q     R
Sbjct: 649 VVMARGGKAAGSVSKKTAFVVVGDSPGSKYDKAVQLKVPVLDEAGFRVLLEQGPDAAR 706


>gi|34540958|ref|NP_905437.1| DNA ligase, NAD-dependent [Porphyromonas gingivalis W83]
 gi|81417286|sp|Q7MV47|DNLJ_PORGI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|34397273|gb|AAQ66336.1| DNA ligase, NAD-dependent [Porphyromonas gingivalis W83]
          Length = 669

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 217/704 (30%), Positives = 347/704 (49%), Gaps = 47/704 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            +  L + +  H+  YY  S P I D EYDA+ ++ + +   +P+    + P+ P +++G
Sbjct: 10  RIEELRRILREHEYRYYVLSSPTIDDFEYDAMMKQLEELEREYPEW---DSPDSPTHRVG 66

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +       V H  P LSL   +N +++  F  R+    Q           E K DG  I
Sbjct: 67  SDKTEGFASVRHDRPMLSLSNTYNYDEIGDFYRRVSEGLQ---GAPFEIVAELKFDGLSI 123

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-EVRGEVYISKNDF 198
           ++ YE G  V A  RGDG  G+DV+A +R I ++P  L  +    + EVRGE+ +   +F
Sbjct: 124 SLIYEDGMLVRAVTRGDGIMGDDVTANVRTIRSVPLRLRGDDYPRMLEVRGEILLPFKEF 183

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N +  A G   +ANPRNAASG +++L+P  +             + E  A+  Y+ L
Sbjct: 184 DRINAQREAEGEPLFANPRNAASGTIKQLDPHIVAGRNLDAYFYYLYSDEPLAENHYDRL 243

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            + R  GF V++ V    +   + ++ +   + R TLP   DG+V KV+  + Q  LG  
Sbjct: 244 MQARQWGFKVSDAVTLCCSKEEVYAFIDRFDTERLTLPVATDGIVLKVNAPAQQDLLGFT 303

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           A+SPRW I++K+  ++  TRL  +  Q+GRTG +TPVA L+PV I G ++  A+LHN D+
Sbjct: 304 AKSPRWAIAYKYQAERVRTRLQHVSYQVGRTGAVTPVANLDPVLISGTVVRRASLHNADF 363

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +D+  GD V V++ GE+IPK+V +  + R  D +P  F   CP C 
Sbjct: 364 I-----------AEKDLHEGDFVYVEKGGEIIPKIVGVDTDARSIDGRPIVFTVLCPDCA 412

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           + +VR+         AA+ C     C  QQ  RL+H+  R   +I    +       +  
Sbjct: 413 TPLVREQGE------AAYYCPNAEGCPQQQKGRLEHYCGRKTADINIGPET-----IELL 461

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                IR  AD + L   Q  +      + GF   +   L DSI   +    +  +F LG
Sbjct: 462 YSRNMIRNVADFYALTEEQLLT------LPGFKKRAAAKLLDSIEASKARPYQAILFGLG 515

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IR VG  +A+ LA  Y S    A   +            L+++  +G+ IA A++ F+  
Sbjct: 516 IRFVGETVAKKLAAVYPSIDALAAATS----------EELVQIDEIGERIAAAVLHFFSL 565

Query: 619 PRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
            +N   +E L L  VS         VS+ +  K +V +GT +K  R + +  V   G  +
Sbjct: 566 RQNRELIERLRLAGVSLEAETVSVAVSNRLAGKTVVISGTFEKRSRDEYKAMVEDNGGRM 625

Query: 678 SAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +S KT  I+ G + G SK EKA++LGV++M+EE+FL L+++
Sbjct: 626 AGSVSSKTSFILAGSDMGPSKREKAEKLGVRLMSEEEFLRLIEE 669


>gi|313674932|ref|YP_004052928.1| DNA ligase, nad-dependent [Marivirga tractuosa DSM 4126]
 gi|312941630|gb|ADR20820.1| DNA ligase, NAD-dependent [Marivirga tractuosa DSM 4126]
          Length = 671

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 216/714 (30%), Positives = 364/714 (50%), Gaps = 47/714 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A +++  L +++ Y++  YYQ S   I D E+D + +    +   FPDL  S   
Sbjct: 1   MEKKAAEQKIQELSEKLHYYNYKYYQESVSEISDYEFDMMLKELIELEEKFPDLKTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++  +   V H IP LSL   ++ E+L  F  R+ R   ++   S  +  E
Sbjct: 58  DSPSQRVGGDITKNFETVEHKIPMLSLGNTYSKEELDDFDGRVKRGLGEE---SYEYFCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
            K DG  I++ YE GK +    RGDG  G+D++   + I TIP  +     PE  E RGE
Sbjct: 115 LKFDGVAISLHYENGKLIRGVTRGDGSKGDDITNNAKTIRTIPLKVRGEQFPEYFEARGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           V++ +  F  +N E    G    ANPRNAASG L+  +   + +             ++ 
Sbjct: 175 VFLPREAFNEINREREENGEALLANPRNAASGTLKMQDSGVVAKRKLDCFLYSYAGEDLP 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E ++++   GF V+   ++    + + ++ NE +  R +LP D DG+V KV+   
Sbjct: 235 IDSHEEGIKQLEKFGFNVSQTYKKCKNINEVFNFINEWEEKRHSLPVDTDGIVIKVNSLG 294

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  A+SPRW I++K+  + ++T L +I  Q+GRTG +TPVA LEPV++ G  +  
Sbjct: 295 QQEQLGFTAKSPRWAIAYKYKAESSTTILKEITYQVGRTGAVTPVANLEPVSLAGTTVKR 354

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN + I  L           D+RVGD V V++ GE+IPK+  + + +R   +    +
Sbjct: 355 ASLHNANEIARL-----------DLRVGDTVHVEKGGEIIPKITGVDLTKRDLGSNEVEY 403

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
              CP C + +VR          A H C     C  Q    ++H++ R A +I+ +G++ 
Sbjct: 404 IQECPECGTELVRAEGE------AVHYCPNKKGCPPQIKGSIEHYIQRKAADIDSMGERT 457

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   ++       ++  AD++ L+            + GF D+S  NL   I + + I  
Sbjct: 458 IHLLYEK----GLVKNVADLYDLKYEDVF------ELEGFKDLSTQNLLKGIEESKQIPF 507

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E  +F LGIR VG  +A  L  ++ +  N A+            +  LI VP +G+ IAQ
Sbjct: 508 ENILFGLGIRFVGKTVAEKLGAHFKNIDNLAKA----------SFDELIEVPEIGERIAQ 557

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           ++VE++ +  NI  +E L         +    +   + +ENK LV +G  +   R + +E
Sbjct: 558 SVVEYFHDEDNIKLIERLKSAGLQFEIQETVIEQKGNVLENKSLVVSGVFEHYGRDEIKE 617

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQY 721
            + Q G  V + +S K DI++ G+N G +KL+KA++LGVKI++E +F  L+++ 
Sbjct: 618 VIKQYGGKVVSAISGKVDILVAGENMGPAKLQKAEKLGVKIIDEVEFRSLIKEN 671


>gi|282896837|ref|ZP_06304843.1| NAD-dependent DNA ligase [Raphidiopsis brookii D9]
 gi|281198246|gb|EFA73136.1| NAD-dependent DNA ligase [Raphidiopsis brookii D9]
          Length = 692

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 225/712 (31%), Positives = 360/712 (50%), Gaps = 53/712 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L + +      YY    PI+ D+ YD L R    +   +P+L  S   + P  ++
Sbjct: 12  QRVEELRKLLQQAGYAYYVLDSPIMEDTIYDRLYRELQELEKKYPNLVTS---DSPTQRV 68

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSIFFTLEPKIDGT 137
           G         V H+IP  SLE  +N+E+L+ +  R  R          + +  E KIDG 
Sbjct: 69  GERPATHFSSVRHNIPLYSLENAFNVEELQTWNQRWIRHLPTPHSLTKVEYVAELKIDGA 128

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGEVYIS 194
            + + Y+ G  V  A RGDG +GED++  +R I +IP  L+   +   E +EVRGEV++ 
Sbjct: 129 ALALTYQNGVLVKGATRGDGITGEDITPNVRTIRSIPLRLNFDGIEPIEKVEVRGEVFLP 188

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL---GKTSEIF 250
              F  +N +    G + +ANPRNA +G LR+L+P     R L+FF + L   G      
Sbjct: 189 LEVFKQINQKRQKAGEQLFANPRNAVAGTLRQLDPRVVAQRQLDFFAYTLHIPGLDDRSI 248

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A  Q+E L+ ++ LGF V+   +  ++   +  YY    + R   PY  DG+V K++ F 
Sbjct: 249 ANTQWESLELLQKLGFRVDVNHKLCSSVDEVAQYYQYWNTERLNSPYMTDGVVVKLNAFK 308

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG   + PRW I+ K+A ++A TR+ +I + +GRTG LTP+A + PV + G  ++ 
Sbjct: 309 LQEQLGFTQKFPRWAIALKYAAEEAPTRVENIMVNVGRTGALTPLAEMRPVQLAGTTVSR 368

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D ++ L           DIR+GD V+V++AGE+IP+VV +I   R  + +PF  
Sbjct: 369 ATLHNSDRLREL-----------DIRIGDTVIVRKAGEIIPEVVRVIKELRPNETKPFIM 417

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C   VVR+L           RC    +C A     ++H+VSRDA +I+G+G++ 
Sbjct: 418 PTNCPVCGQPVVRELGE------VVTRCVNA-SCPAILKGEIEHWVSRDALDIKGIGEKL 470

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +            +   AD+++L   Q         +   G  S   L   I + +N   
Sbjct: 471 VHQLVDK----GLVHSVADLYSLTEEQLCG------LERMGKRSAEKLVQVIRESKNQPW 520

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R ++ LGIRHVG   A+ L++ + +    A    +           +  V  +G  IAQ
Sbjct: 521 SRVLYGLGIRHVGNVNAQLLSEKFTTVDKLATAKQS----------DIEGVYGIGVEIAQ 570

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH----EKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++ +++    N   +  L                     ++ NK  V TGTL  ++R +A
Sbjct: 571 SVYQWFHISANQNLITRLQSIGLQFDQTQLIYNAAATKPDLVNKIFVITGTLPTLKRDEA 630

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  + + GA V+  LS+KTD ++VGD  GSKLEKA+ LG+K ++E + L +L
Sbjct: 631 KSLIQKAGAKVTDSLSKKTDFVVVGDKAGSKLEKARALGIKQLDEAELLEML 682


>gi|253565642|ref|ZP_04843097.1| DNA ligase [Bacteroides sp. 3_2_5]
 gi|251945921|gb|EES86328.1| DNA ligase [Bacteroides sp. 3_2_5]
          Length = 665

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 223/706 (31%), Positives = 348/706 (49%), Gaps = 48/706 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L  ++  H+  YY  + P I D E+D L R    +    P+     D N P  
Sbjct: 3   VKEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEYK---DENSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +      +       E K DG
Sbjct: 60  RVGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRVRKAL----NEDFEICCEMKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195
           T I++ YE GK + A  RGDG  G+DV+  ++ I +IP VL   N PE+ E+RGE+ +  
Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPEVFEIRGEILMPW 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
             F ALN E  A     +ANPRNAASG L+  N   +                +   G Y
Sbjct: 176 EVFEALNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPTDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ+    GF ++  +R+  T   +  + N     R  L    DG+V KV+    Q+ L
Sbjct: 236 ENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+GL           D+ +GD V V++ GE+IPK+  +  + R    +   F + CP
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSVRFMIGEKVKFITHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F+
Sbjct: 405 ECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I   AD++ L             +   GD S  N+   I + + +  ER IF
Sbjct: 459 R----LGLIHDTADLYRLTTDDIRG------LDRMGDKSAENIIKGIMQSKEVPFERVIF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ +AK +   +               D  +LI +  +G+ IA++I+ +
Sbjct: 509 ALGIRFVGETVAKKIAKSFKDIEELENA----------DLETLINIDEIGEKIARSILNY 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           + N  N   V  L           E       ++  + +V +G      R + ++ + + 
Sbjct: 559 FANESNRKLVGRLKTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTHHSRDEYKDLIEKH 618

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           G      +S KT  I+ GDN G +KLEKA +LG+KIMNEE+FL L+
Sbjct: 619 GGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664


>gi|313884866|ref|ZP_07818618.1| DNA ligase (NAD+) [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619557|gb|EFR30994.1| DNA ligase (NAD+) [Eremococcus coleocola ACS-139-V-Col8]
          Length = 673

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 225/720 (31%), Positives = 375/720 (52%), Gaps = 57/720 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ ++++        L+++++     YY   KP   D+ YD + R+ + +    PD    
Sbjct: 4   IKEMTLDD----YQDLKEQLNQLAYAYYVLDKPQAEDAVYDQMYRQLENLEKIHPDWL-- 57

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ P  +IG ++     KVTH  P  SL   ++ E++  FI R+           + F
Sbjct: 58  -SPDSPTQRIGDQVLAGFEKVTHLEPLYSLANAFSEEEVVAFIDRVQNQVS----GPLTF 112

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E KIDG  I++RYE G FV  A RGDG  GE++++ +R I  +P  L   +    E R
Sbjct: 113 MCECKIDGLSISLRYEDGLFVQGATRGDGRVGENITSNLRTIKALPLRLQKPVSG--EFR 170

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247
           GE Y+ K  F  LN+     G  P+ANPRNAA+G LR++NP +   R LN F++G     
Sbjct: 171 GEAYMPKAVFQKLNESRDLAGLAPFANPRNAAAGGLRQINPKEAAKRQLNIFMYGAVYNE 230

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +     Q ++   ++ LG   N   R  +    I++Y  E+   R+ LPY+IDG+V KV+
Sbjct: 231 DYQIDSQAQLFDFLQELGLRTNPLRRLCHNKEEIMAYIQEVGQKRADLPYEIDGVVIKVN 290

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q  LG   ++PRW I++KF  +  +TRL +++  +GRTG++TP A ++PV + G  
Sbjct: 291 QVAQQSSLGYTVKAPRWAIAYKFKAQVEATRLKEVEWTVGRTGVVTPTAVMDPVFLAGTT 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN D IK L           D+R+GD+V++ +AG++IP+++++ +++R  D+ P
Sbjct: 351 VQRASLHNIDLIKAL-----------DVRIGDQVVIHKAGDIIPEIIEVNLDQRPADSTP 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP+C   + R+          A RC   L C AQ+L ++ HF SR A NI GLG
Sbjct: 400 LVIPETCPVCYHPLEREAGE------VALRCLNPL-CPAQRLAQISHFGSRGAMNISGLG 452

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ +      +     I+  AD++ L      +   +  +    + S   L  +I   + 
Sbjct: 453 EKVVAALLDHD----MIQNVADLYHL------TLADLLKLPNTKEKSAQKLLQAIEASKT 502

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SLER +F  GIRHVGA+ AR +A+ + + +  +Q               +  +  +G I
Sbjct: 503 NSLERLLFGFGIRHVGAKAARLVAQKFDTIEALSQASE----------EEITNIDGIGTI 552

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-----KKLVFTGTLQKIQ 662
           IA+++V+F Q+  +   ++ L            K   + ++N     K +V TGT+    
Sbjct: 553 IAKSLVDFLQDEASHALIQDLTNMGVNMTYTGPKVNQTSLDNDFWLDKTVVLTGTMASYS 612

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R +A+E +  LGA V   +S+ TD ++ G + GSKL KA+QLGV I++E +FL  + + +
Sbjct: 613 RSQAKEILQGLGAKVIGSVSKNTDYLVAGQDAGSKLSKAEQLGVTILDESEFLAQINEES 672


>gi|317056400|ref|YP_004104867.1| DNA ligase, NAD-dependent [Ruminococcus albus 7]
 gi|315448669|gb|ADU22233.1| DNA ligase, NAD-dependent [Ruminococcus albus 7]
          Length = 659

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 221/710 (31%), Positives = 370/710 (52%), Gaps = 53/710 (7%)

Query: 12  LSIEQ-ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           +S ++ A+K +  L + ++YH   YY   +  I D EYD L+     +  A PDL R   
Sbjct: 1   MSEKESAKKRIDELVEILNYHSRLYYVEDRNEISDYEYDMLQNELKKLEAANPDLIRK-- 58

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GGE      KVTH +   SL+ +++ +++R+F+ R+             F +
Sbjct: 59  -DSPTQRVGGEAVSGFEKVTHKVQMGSLQDVFSFDEVREFVDRVRESVS-----DPVFVV 112

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           EPKIDG  +++ Y  G+    + RGDG  GE+V+  ++ + +IP     +   +IEVRGE
Sbjct: 113 EPKIDGLSVSLEYHDGQLTVGSTRGDGFVGENVTENLKTVRSIPV-TIDSSLPMIEVRGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI 249
           VY+ +N FL+L  E      +P+ NPRNAA+G LR+ +P     R L+ FV  + +    
Sbjct: 172 VYMPRNVFLSLIKEQEDNDEQPFKNPRNAAAGSLRQKDPKIAAKRKLDIFVFNVQQVDGK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 + L  ++ LGF      +Q +T   I++  NE+   R  LPYDIDG+V KVD+F
Sbjct: 232 ELTAHKQSLDYLKELGFKTVPDYKQVSTSDEIIARINEIGESRFDLPYDIDGVVIKVDDF 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             +  LG  A+ P+W +++KF  ++ +T+L+DI++ +GRTG +TPVA  EPV + G  ++
Sbjct: 292 KHRDILGATAKVPKWAVAYKFPPEEKNTKLIDIELNVGRTGAVTPVAVFEPVFLAGTQVS 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+D           +   ++I +GD + V++AG++IP+V+  +          F 
Sbjct: 352 RATLHNQD-----------LIIEKNINIGDTIRVRKAGDIIPEVLGSVEKN---SEGAFM 397

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C +++V+  +       AA RC     C AQ    + HF S+ A NI+GLG Q
Sbjct: 398 LPDECPVCHTKLVKSEDE------AAVRCPNV-ECPAQIFRSIVHFASKGAMNIDGLGPQ 450

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +     ++     I   AD++ ++     +      +  F + S  NL  +I K R++S
Sbjct: 451 IVRLLLDNK----LITSVADLYNIKEDDLLA------LDSFKEKSAHNLVTAIEKSRSVS 500

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L+R IF LGIR++G   A+ L   +    +                  +  +   G ++A
Sbjct: 501 LDRLIFGLGIRNIGQASAKLLCAKFGGLDSIMSAT----------AEEISGIDGFGVVMA 550

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           Q++   +     I  ++ L KE   +    +         K  V TGTL  ++R+ A+E 
Sbjct: 551 QSVYNAFHEEHMIALIQRL-KECGVNTEYEKVQQDDRFAGKTFVLTGTLPTLKRNDAKEL 609

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + + G   S  +S+KTD ++ G+  GSKL KAQ+LGVKI++EE+F+ +++
Sbjct: 610 IEKFGGKASGSVSKKTDFVLAGEEAGSKLTKAQELGVKIISEEEFMEMIK 659


>gi|150025890|ref|YP_001296716.1| DNA ligase (NAD+) [Flavobacterium psychrophilum JIP02/86]
 gi|166215404|sp|A6H0N9|DNLJ_FLAPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149772431|emb|CAL43913.1| DNA ligase (NAD+) [Flavobacterium psychrophilum JIP02/86]
          Length = 666

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 225/703 (32%), Positives = 360/703 (51%), Gaps = 46/703 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++ SL +E++ H+  YY    P I D ++D       ++    P+     D N P  ++
Sbjct: 5   QKIQSLREELNLHNYNYYVLDNPTISDYDFDVKLTDLQSLEKNNPEYF---DENSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +  +   + H     SL+  ++ EDL  +  RI +      D  + +  E K DG  
Sbjct: 62  GGTITKNFETLKHDYRMYSLDNSYSKEDLLDWENRIQKALG---DVPLEYICELKYDGAS 118

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I+I YE G+ V A  RGDG  G+DV+  I+ I  +P  L  + PE  ++RGE+ +    F
Sbjct: 119 ISITYENGRLVRAVTRGDGFQGDDVTNNIKTIKAVPIKLKGDFPEKFDIRGEIILPFAGF 178

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N ++I +G  PY+NPRN ASG L+  +  ++ +     +      + +  +  +E L
Sbjct: 179 EKMNQDLIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLDCLLYSLIGNNLPFQSHFEGL 238

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           +K R  GF V      A   + +  + N     R TLPY+ DG+V KV++  LQ +LG  
Sbjct: 239 EKARLWGFKVPKQSHLAKNMNEVFDFINIWDKNRHTLPYETDGVVIKVNDLHLQDELGYT 298

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           A+SPRW I++KF  +Q  T+L  I  Q+GRTG +TPVA LEPV + G ++  A+LHN D 
Sbjct: 299 AKSPRWAIAYKFKSEQVFTQLNSISYQVGRTGSITPVANLEPVQLAGTIVKRASLHNADQ 358

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I+ L           DIR+ D V V++ GE+IPK++ + + +R  ++Q  ++ + CP CQ
Sbjct: 359 IEKL-----------DIRINDTVFVEKGGEIIPKIIGVDLQKRPSNSQKTAYITHCPECQ 407

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           +++ R          A H C     C  Q + R++H++SR A +IEGLG + +   + + 
Sbjct: 408 TKLERKEGE------ANHYCPNFYGCRPQIIGRIQHYISRKAMDIEGLGGETVALLYDN- 460

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                ++  AD++ L   Q      I  +      S  NL   +   +NI  E  +F+LG
Sbjct: 461 ---GLVKNYADLYDLSVEQ------ILPLERMAQKSAENLVQGVQNSKNIPFENVLFALG 511

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IR+VG  +A+ LAK+Y +    A            + L L+ V  +GD IAQ++VEF+ N
Sbjct: 512 IRYVGETVAKKLAKHYKNIDAIANA----------NLLELVMVDEIGDKIAQSVVEFFDN 561

Query: 619 PRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
             NI  +E L           E N  VS+++  K  V +G  +   R + ++ +   G  
Sbjct: 562 QENISVLERLKNNGIQLAISEENNTVVSNKLLGKIFVVSGVFEIYSRDELKKAIEDNGGK 621

Query: 677 VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           V + +S KT+ +I G N G +KLEKA QL V I++E  F  LL
Sbjct: 622 VGSSISAKTNYVIAGQNMGPAKLEKANQLKVSIISESDFSALL 664


>gi|227548037|ref|ZP_03978086.1| DNA ligase (NAD(+)) [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079891|gb|EEI17854.1| DNA ligase (NAD(+)) [Corynebacterium lipophiloflavum DSM 44291]
          Length = 689

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 228/712 (32%), Positives = 362/712 (50%), Gaps = 46/712 (6%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +S     ++   L  ++ +H D YY   + +I D+E+D L     A   A P+LA  
Sbjct: 18  VSDIS-ADLHRQWDDLASQVRHHRDLYYN-GQQVISDAEFDKLFNNLVAFEEAHPELAV- 74

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P  P  ++G  ++ +   VTH    +SL+ +++ E+L  ++ +              +
Sbjct: 75  --PESPTKEVGAPVSSAFADVTHLERMMSLDNVFSAEELADWLAKT----------PGPY 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E KIDG  I + YE G+ V AA RGDG  GED++A  + IP IP  L+ + PE++EVR
Sbjct: 123 LTELKIDGLSIDLVYENGELVRAATRGDGRVGEDITANAKVIPDIPHRLTGDFPELLEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247
           GEV+I   DF  LN++ I  G KP+ANPRN A+G LR+ NP D   R L    HG+G   
Sbjct: 183 GEVFIRPEDFPELNEQRIKEGGKPFANPRNTAAGGLRQKNPEDVKKRRLRMICHGIGARE 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 Q+E  +K+   G PV+   R+A T + +    +     R    +++DG+V KVD
Sbjct: 243 GFSPASQFEAYEKLAEWGLPVSEYTRRAETANEVQESVDYWAEHRHDAIHEMDGVVIKVD 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             + Q+ LG  +R+PRW I++K+  ++ +T+LLDI++ +GRTG  TP A LEPV + G+ 
Sbjct: 303 SVATQRSLGATSRAPRWAIAYKYPPEEVTTKLLDIEVSVGRTGRATPFAVLEPVFVSGST 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN+  +K            + + +GD V++++AGE+IP+V+  + + R    + 
Sbjct: 363 VSLATLHNQHEVKR-----------KGVLIGDTVVIRKAGEIIPEVLGPVADLRDGSERE 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F +P  CP C + +         +  A  RC    +C AQ  +RLK+  SR AF+IE LG
Sbjct: 412 FIYPKDCPACGTELA-----PAKEGDADWRCPNTRSCPAQLSQRLKYLASRGAFDIEALG 466

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++       S      +    D+F L       ++      G  + +   L  +++  R 
Sbjct: 467 EKGAIDLIDS----GVLVDEGDLFDLTEEDLKKSSAYTTKAGNVNAAGKKLLANLDTARE 522

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R + +L IRHVG   AR+LA  Y S Q                   L     VG +
Sbjct: 523 RELWRVLVALSIRHVGPTAARALAARYASMQALIDAP----------VADLADTDGVGLV 572

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IAQ+  +++    +   V+   K     +          +E   +V TGTL+   R +A+
Sbjct: 573 IAQSFKDWFTVDWHRDIVDKWAKAGVRMVDDTTDAAPQTLEGLTVVVTGTLENFSRDEAK 632

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E +   G   +  +S+KT  ++VG+N GSK +KA++LGV I+NEEQF  LLQ
Sbjct: 633 EAILSRGGKAAGSVSKKTSYVVVGENAGSKEDKARELGVPILNEEQFEQLLQ 684


>gi|255658313|ref|ZP_05403722.1| DNA ligase, NAD-dependent [Mitsuokella multacida DSM 20544]
 gi|260849632|gb|EEX69639.1| DNA ligase, NAD-dependent [Mitsuokella multacida DSM 20544]
          Length = 675

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 214/711 (30%), Positives = 349/711 (49%), Gaps = 47/711 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           SI+Q +KEL+ L + I YH++ YY    P I D EYD L  R  AI   +P+L      N
Sbjct: 9   SIQQVKKELTELRKTIRYHNNRYYNEDNPEISDYEYDQLMLRLKAIEAKYPELI---TKN 65

Query: 73  GPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P   +GG+    +   V H +P LSL+ +++ E++  F+  + +  +        F +E
Sbjct: 66  SPTQVVGGQARRTAGVLVKHDVPMLSLQDVFSKEEIFAFVEELQQELEAP-----EFVVE 120

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
            KIDG  + +RYE G+ V A  RGDG   GEDV+   + I  + + L   +P   E+RGE
Sbjct: 121 EKIDGLSMALRYEDGELVRAITRGDGIVQGEDVTENAKVIHDVKKKLKDKLPY-FEIRGE 179

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249
           VY+ K  F A+N     +G KP+ANPRN A+G LR+L+      R+L+ F+  L      
Sbjct: 180 VYMEKKAFDAVNARQELLGLKPFANPRNCAAGTLRQLDSRITKERHLSLFIFNLQTARGR 239

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E    M+  G  V +G +  +T   +      +   R  LPYDIDG V K++  
Sbjct: 240 TFTTHTEAYDFMKKQGIKVIHGYKVCHTADEVWQAITAIGENRGNLPYDIDGAVVKLNNL 299

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + +++LG  A+ PRW I++K+  ++  T +  I++ +GRTG +TP A  +P+ + G  + 
Sbjct: 300 ADREKLGATAKVPRWAIAYKYPPEEKETVIRKIELSVGRTGRITPTAVFDPIRLCGTTVE 359

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+D+I  L           D+R+GD V V ++GE+IPKV +++  +R    +PF 
Sbjct: 360 RATLHNQDFIDNL-----------DVRIGDTVRVYKSGEIIPKVKEVVKEKRPAGTEPFV 408

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
             + CP+C +  VR+ +    K           +C AQ    + +FV R A +I+GLG+ 
Sbjct: 409 IGTTCPVCGAPAVREPDTSDIK-------CKNPSCPAQLESHILNFVGRSAMDIKGLGEA 461

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +    +       I   AD++ L  +++    K        + +   +  +I   +   
Sbjct: 462 AIHRLIED----GFIATIADLYRLGGKREELIEKGII---GKEKNTDKVLAAIEASKENE 514

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            +R +  LGI  +G   AR L  ++ S    A+               ++ V  +G+I A
Sbjct: 515 PQRLLTGLGIPGIGRTAARELMLHFGSIDALAKASE----------EEILEVRDMGEISA 564

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +AIV+++ +P +   + A               V  +   K  V TGTL  + R  A   
Sbjct: 565 KAIVQYFNDPASQKILAAFRAAGVNFTLEDTGLVDEKFAGKTFVITGTLPSLSRKDAAAL 624

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +   G  V+  +S+KTD ++ G+  GSKL+KA  LG+ I++E     LL+ 
Sbjct: 625 IESHGGRVAGSVSKKTDYLVAGEAAGSKLQKATDLGITILDEAGLQALLED 675


>gi|167770441|ref|ZP_02442494.1| hypothetical protein ANACOL_01786 [Anaerotruncus colihominis DSM
           17241]
 gi|167667036|gb|EDS11166.1| hypothetical protein ANACOL_01786 [Anaerotruncus colihominis DSM
           17241]
          Length = 664

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 207/708 (29%), Positives = 350/708 (49%), Gaps = 51/708 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
            +E A++ +  L   I  H+  YY   +P + D EYD L      +  AFP+LA     +
Sbjct: 6   DLESAKRRVQELRTVIEKHNHSYYVLDRPTVSDYEYDRLLHELIDLEEAFPELA---SDH 62

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG    +   V H +   SL+ +++  +L  F  R+    ++       + +EP
Sbjct: 63  SPTRRVGGAALNTFAPVRHEVQMGSLQDVFDTAELEAFDARVREQIERPV-----YIVEP 117

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  + + Y+ G F   + RGDG +GEDVS  ++ + +IP  L   +P +IEVRGEVY
Sbjct: 118 KIDGLSVALEYQDGVFFRGSTRGDGVTGEDVSENLKTVRSIPMTLPEALP-LIEVRGEVY 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + ++ F  +    +    +P+ NPRNAA+G LR+ +      R L+ FV  + +      
Sbjct: 177 MPRSSFERVVARQLENEEEPFKNPRNAAAGSLRQKDSRVTAQRGLDIFVFNIQRIEGKTL 236

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            G  E L  M+ LGF V    +  +     ++    + + R   P+DIDG V KVD+F+ 
Sbjct: 237 SGHKESLDYMKSLGFKVIPSYKAFDNISDAIAEVERIGAQRYEFPFDIDGAVIKVDDFAQ 296

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           ++ LG  ++ P+W ++ K+  ++  + L DI+I++GRTG LTP A  EP+ + G  ++ A
Sbjct: 297 REALGATSKFPKWAVAFKYPPEEKQSVLRDIEIKVGRTGALTPTAVFEPITLAGTTVSRA 356

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
            LHN+D+I             + I +GD ++V++AG++IP+VV +  ++  PDA  +  P
Sbjct: 357 VLHNQDFI-----------NEKGIAIGDTIVVRKAGDIIPEVVSVARHQ--PDAPVYQIP 403

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S   R+         A  RC    AC AQ    L HF SRDA +I+G+G   +
Sbjct: 404 AVCPSCGSTAEREEGE------AVLRCVNM-ACPAQVARNLTHFASRDAMDIDGMGPAIV 456

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                    A  ++  AD+++L + Q  +      +   G+ S  NL  ++ + ++  L 
Sbjct: 457 HQLL----AAGLVKSAADLYSLTQAQLAA------LERMGERSAQNLIAALEQSKSRDLA 506

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +++LGIR +G   A+ LA+ + +                     + ++   G I+AQ 
Sbjct: 507 RLLYALGIRGIGQRSAQLLAQRFGTMDGVLAA----------SVEEIAQIDGFGGIMAQN 556

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             +F+    N   ++ L                  +  K  V TGTL  + R +A+  + 
Sbjct: 557 TADFFALEPNRALIDRLRAAGLNMACTSAPTAD-TLSGKIFVLTGTLPTLTRGEAKAMIE 615

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             G  VS  +S+KTD ++ G+  GSKL KA +LGV +++E     +L+
Sbjct: 616 AAGGKVSGSVSKKTDYVVAGEEAGSKLRKAGELGVAVLDEAALRAMLE 663


>gi|326559356|gb|EGE09783.1| NAD-dependent DNA ligase [Moraxella catarrhalis 7169]
          Length = 691

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 263/711 (36%), Positives = 389/711 (54%), Gaps = 45/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE      +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+     + +E+RGEV +
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAK 252
            K  F  LN E IA G K +ANPRNAA+G LR+LN          FF + +         
Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   +Q +  LGF + +  + A +   I ++Y  +   RS LP++IDGLV KV++ +LQ
Sbjct: 255 TQSGAMQWLGQLGFEIAS-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N T
Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   I+ L            + VGD V V RAG+VIPKV  +I   R  DA+P   P+
Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+CQS +            A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L 
Sbjct: 423 VCPVCQSPISLPEGE------ALARCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF+       ++  ADI+ L +        +  + G GD SVT +  +I K +  +L R
Sbjct: 477 KFFE----MGLVQTVADIYKLHK----QAEYLITLEGMGDKSVTKMLSAIEKSKQTTLPR 528

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A SLA+ +   Q+  +           D  +L  VP +G+I AQ+I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F++   NI  V+AL++           + SS  +  +  V TGTL  + R +A++ + 
Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|326569993|gb|EGE20040.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC1]
          Length = 691

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 263/711 (36%), Positives = 389/711 (54%), Gaps = 45/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE      +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+     + +E+RGEV +
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAK 252
            K  F  LN E IA G K +ANPRNAA+G LR+LN          FF + +         
Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   +Q +  LGF + +  + A +   I ++Y  +   RS LP++IDGLV KV++ +LQ
Sbjct: 255 TQSGAMQWLGQLGFEIAS-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N T
Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   I+ L            + VGD V V RAG+VIPKV  +I   R  DA+P   P+
Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+CQS +            A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L 
Sbjct: 423 VCPVCQSPISLPEGE------ALARCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF+       ++  ADI+ L +        +  + G GD SVT +  +I K +  +L R
Sbjct: 477 KFFE----MGLVQTVADIYKLHK----QAEYLITLEGMGDKSVTKMLSAIEKSKQTTLPR 528

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A SLA+ +   Q+  +           D  +L  VP +G+I AQ+I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F++   NI  V+AL++           + SS  +  +  V TGTL  + R +A++ + 
Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|326572929|gb|EGE22914.1| NAD-dependent DNA ligase [Moraxella catarrhalis CO72]
          Length = 691

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 264/711 (37%), Positives = 389/711 (54%), Gaps = 45/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE      +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+     + +E+RGEV +
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAK 252
            K  F  LN E IA G K +ANPRNAA+G LR+LN          FF + +         
Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   +Q +  LGF + +  + A +   I ++Y  +   RS LP++IDGLV KV++ SLQ
Sbjct: 255 TQSGAMQWLGQLGFEIAS-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLSLQ 313

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N T
Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   I+ L            + VGD V V RAG+VIPKV  +I   R  DA+P   P+
Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+CQS +            A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L 
Sbjct: 423 VCPVCQSPISLPEGE------ALARCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF+       ++  ADI+ L +        +  + G GD SVT +  +I K +  +L R
Sbjct: 477 KFFE----MGLVQTVADIYKLHK----QAEYLITLEGMGDKSVTKMLSAIEKSKQTTLPR 528

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A SLA+ +   Q+  +           D  +L  VP +G+I AQ+I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F++   NI  V+AL++           + SS  +  +  V TGTL  + R +A++ + 
Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|162148970|ref|YP_001603431.1| DNA ligase [Gluconacetobacter diazotrophicus PAl 5]
 gi|190359260|sp|A9H0L6|DNLJ_GLUDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|161787547|emb|CAP57143.1| putative DNA ligase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 695

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 280/715 (39%), Positives = 409/715 (57%), Gaps = 34/715 (4%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
               L+  QA  EL  L Q+I   D  YY+   P + D+EYDAL++R  AI   FPDL R
Sbjct: 2   DPSELTEPQAMVELERLAQQIRALDRAYYEDDAPTVTDAEYDALRQRNLAIEARFPDLRR 61

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-- 125
           +   + P   + G  + +  +  H +P LSL+ ++  ED   F+TR  RF    DD +  
Sbjct: 62  A---DSPSLHVSGAPSAAFGRHRHLVPMLSLDNVFGREDFESFVTRAARFLGLNDDQARA 118

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + F  EPKIDG  I++ YE G+FV    RGDG  GEDV+A +R +  +P  L    P +I
Sbjct: 119 LRFVAEPKIDGLSISLTYEHGRFVRGTTRGDGTEGEDVTANLRTLRDVPLRLKGPAPALI 178

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           E+RGEV++SK  FL++N      G+KP+ANPRNAA+G LR+L+P     R L+ F +  G
Sbjct: 179 EIRGEVFLSKPAFLSINAAQAEAGQKPFANPRNAAAGSLRQLDPNITARRPLSLFAYAQG 238

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
            +S+  A   ++ L+++R  GF VN       +     ++ + +   RS L YDIDG+VY
Sbjct: 239 FSSDRVADTHWDYLERLRQWGFTVNPLSCVVESAEAAEAFMDRIARERSGLEYDIDGVVY 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD+ +LQ +LG   R+PRW I+ KF  +QA TRL  IDIQ+GRTG LTPVA LEPVN+G
Sbjct: 299 KVDDLALQDRLGFVGRAPRWAIAWKFPAEQAITRLTRIDIQVGRTGALTPVAILEPVNVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERH 422
           G ++T ATLHNED I             +D+RVGD V ++RAG+VIP+++ ++    +  
Sbjct: 359 GVIVTRATLHNEDEIAR-----------KDVRVGDLVQIQRAGDVIPQILGVVPPGADAP 407

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P  + F FP  CPIC +R  R             RCTGGL C AQ +ERL HFVSRDAF+
Sbjct: 408 PRGEAFIFPHTCPICGARAERPPGE------VVWRCTGGLTCPAQVVERLIHFVSRDAFD 461

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GLG++ +  F         ++ PADIF L   +      I    G+G VS  NL  S+
Sbjct: 462 IDGLGERTITEFHAD----GLLKTPADIFRLPDHEA----DIATREGWGTVSARNLTASV 513

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
             R+ I L RFI++LGIR +G   AR LA++Y SY ++ +++       +D+ L+L  + 
Sbjct: 514 RARQTIPLARFIYALGIRRIGTSNARLLARHYGSYTHWREQMLRATTIGSDERLALGSIT 573

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G  IA  +  F+    N+  ++ L   ++             +  K +VFTGTL  + 
Sbjct: 574 GIGGAIADELAAFFMEAHNLETLDDLTAMLTAIEDEDLPAQGH-LSGKTVVFTGTLTTMT 632

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           R +A+    +LGA V+  +S+KTD++++G + GSK  KA +LG+  ++EE +  L
Sbjct: 633 RPEAKAIAERLGARVTDSVSKKTDLVVLGADAGSKARKAAELGIDTLDEEGWREL 687


>gi|326570074|gb|EGE20120.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC7]
          Length = 691

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 263/711 (36%), Positives = 388/711 (54%), Gaps = 45/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDGEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE      +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+     + +E+RGEV +
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAK 252
            K  F  LN E IA G K +ANPRNAA+G LR+LN          FF + +         
Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   +Q +  LGF +    + A +   I ++Y  +   RS LP++IDGLV KV++ +LQ
Sbjct: 255 TQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N T
Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   I+ L            + VGD V V RAG+VIPKV  +I   R  DA+P   P+
Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+CQS +            A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L 
Sbjct: 423 VCPVCQSPISLPEGE------ALARCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF+       ++  ADI+ L +        +  + G GD SVT +  +I K +  +L R
Sbjct: 477 KFFE----MGLVQTVADIYKLHK----QAEYLITLEGMGDKSVTKMLSAIEKSKQTTLPR 528

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A SLA+ +   Q+  +           D  +L  VP +G+I AQ+I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F++   NI  V+AL++           + SS  +  +  V TGTL  + R +A++ + 
Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|326573825|gb|EGE23778.1| NAD-dependent DNA ligase [Moraxella catarrhalis O35E]
          Length = 691

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 263/711 (36%), Positives = 388/711 (54%), Gaps = 45/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDGEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE      +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+     + +E+RGEV +
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAK 252
            K  F  LN E IA G K +ANPRNAA+G LR+LN          FF + +         
Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   +Q +  LGF +    + A +   I ++Y  +   RS LP++IDGLV KV++ +LQ
Sbjct: 255 TQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N T
Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   I+ L            + VGD V V RAG+VIPKV  +I   R  DA+P   P+
Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+CQS +            A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L 
Sbjct: 423 VCPVCQSPISLPEGE------ALARCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF+       ++  ADI+ L +        +  + G GD SVT +  +I K +  +L R
Sbjct: 477 KFFE----MGLVQTVADIYKLHK----QAEYLITLEGMGDKSVTKMLSAIEKSKQTTLPR 528

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A SLA+ +   Q+  +           D  +L  VP +G+I AQ+I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F++   NI  V+AL++           + SS  +  +  V TGTL  + R +A++ + 
Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|213964541|ref|ZP_03392741.1| DNA ligase, NAD-dependent [Corynebacterium amycolatum SK46]
 gi|213952734|gb|EEB64116.1| DNA ligase, NAD-dependent [Corynebacterium amycolatum SK46]
          Length = 703

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 208/720 (28%), Positives = 350/720 (48%), Gaps = 51/720 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    +    R++   L   I  +   YY  ++P+I D+EYD + R+   +   +PDL  
Sbjct: 23  PASEPAPADVREKWQELATRIRDNAALYYT-AQPVISDAEYDEMFRQLQQLEEQWPDLVV 81

Query: 68  SEDPNGPLNKIGGEMN-----LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
              P+ P  ++G ++           V H     SL+ +++ ++LR ++ R         
Sbjct: 82  ---PDSPTQQVGAQVEAPADGEVFEPVEHLERLYSLDNVFDEQELRGWLART-------- 130

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI- 181
             +  +  E KIDG  I + YEKG+ V AA RGDG  GE+V+A  R I  IP  +S    
Sbjct: 131 -PASTYLTELKIDGLSIDLVYEKGRLVRAATRGDGRVGENVTANARTIEDIPHEISGENV 189

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFV 240
           P+++EVRGEV+IS  +F  +N + +  G+KP+ANPRNAA+G LR+ +  +   R L+   
Sbjct: 190 PDVLEVRGEVFISLEEFERINSDRVDAGQKPFANPRNAAAGSLRQKDVAEVAKRRLSMIC 249

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           HG+G       + Q+E  + +   GF V+    Q ++   +V         R    +++D
Sbjct: 250 HGIGHIEGWRPQSQHEAYRALGEWGFHVSPYTNQVHSADDVVKQMQYWGEHRHDAIHEMD 309

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           GLV KVD  S Q+ LG  +R+PRW I++K+  ++ +T LLDI + IGRTG  TP A ++P
Sbjct: 310 GLVVKVDSLSEQRALGATSRAPRWAIAYKYPPEEVTTDLLDIRVSIGRTGRATPYAVMKP 369

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G+ +  ATLHN   +             + + +GDRV +++AG+VIP+V+  + + 
Sbjct: 370 VFVAGSTVEMATLHNPSEVHR-----------KGVLIGDRVTIRKAGDVIPEVLGPVADL 418

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R    + + +P+ CP C +R+            A  RC     C  Q   R++   SR  
Sbjct: 419 RDGSERKYIYPTLCPECGTRLA-----PAKDSDADWRCPNTRYCPGQLRRRIEFLASRSG 473

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG-DVSVTNLY 539
           F+IE LG++              +   + +F L       T           + +   L 
Sbjct: 474 FDIENLGERGAADLIHR----GVLDDESRLFDLTEEDLLGTEVYTTASRKSLNANGKKLL 529

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I+  ++  L R + SL IRHVG  +AR+LA+ + S +                   + 
Sbjct: 530 ANIDAAKDKELWRVLVSLSIRHVGPTVARTLAQKFGSMEALRAA----------SREEIS 579

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +  +G+II  ++ ++++   +   VE                    +E   +V TG+L+
Sbjct: 580 AIDGIGEIIGDSVADWFEVDWHREVVERWEAAGVRMADEVTDRPDQVLEGLTVVVTGSLE 639

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R  A+E +   G   +  +S+KTD ++VG+N GSK  KA++LG+ I++E+ F  LL+
Sbjct: 640 DFTRDSAKEAIISRGGKAAGSVSKKTDYVVVGENAGSKATKAEELGLPILDEDGFKRLLE 699


>gi|325962711|ref|YP_004240617.1| DNA ligase, NAD-dependent [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468798|gb|ADX72483.1| DNA ligase, NAD-dependent [Arthrobacter phenanthrenivorans Sphe3]
          Length = 767

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 216/751 (28%), Positives = 359/751 (47%), Gaps = 63/751 (8%)

Query: 3   KRQLIPIEALSI--EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
            R   P+E  S+  E  R+E  +L   +  +   YYQ   P++ D+E+D L RR + I  
Sbjct: 13  TRTTEPVEPESVPSESVREEYENLVDLVRKYRFAYYQEDAPLVSDAEFDELFRRLEEIEA 72

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
             P+L      + P  ++GGE++ +   V H     SLE ++++E+L  ++T+      K
Sbjct: 73  LHPELV---SNDSPTQEVGGEVSAAFAAVEHLQRMYSLEDVFSLEELEAWLTKASASIGK 129

Query: 121 KDDNSIF--FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
             + +    +  E KIDG  + + Y  GK V AA RGDG +GED++  +  I  IPR L 
Sbjct: 130 LGNGTPAAAWLTELKIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHNVLTIQEIPRELR 189

Query: 179 LN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYL 236
               P  +EVRGEV+I   +F   N+ +I  G+ P ANPRNAA+G LR+ +P +   R L
Sbjct: 190 GEGFPAEMEVRGEVFIPSKEFAEFNEALIEAGKAPLANPRNAAAGSLRQKDPAETAKRPL 249

Query: 237 NFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
             FVHG+G    + A  Q E    ++  G PV+       +   ++ +       R  L 
Sbjct: 250 KMFVHGIGARDGLPAGSQSESYALLKQWGLPVSPYSEVLGSLDEVLEFIKRYGDKRHKLL 309

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           ++IDG+V KVD+F+ Q+ LG   R PRW +++K+  ++  T+LLDI + +GRTG +TP  
Sbjct: 310 HEIDGIVIKVDDFATQRALGYTTRVPRWAVAYKYPPEEVHTKLLDIQVNVGRTGRVTPFG 369

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            +EPV + G+ +  ATLHN+D +K            + +++GD V++++AG+VIP++V  
Sbjct: 370 LMEPVKVAGSTVEMATLHNQDVVK-----------AKGVKIGDIVILRKAGDVIPEIVGP 418

Query: 417 IVNERH---PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
           ++  R    P  + F  P+ CP C + +         +     RC    +C +Q  ER+ 
Sbjct: 419 VLALRDQQDPPVRDFVMPTECPSCGTPLA-----PAKEGDVDIRCPNAKSCPSQLRERVF 473

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKIENI----- 527
           H   R AF+IE LG +      +  +P    +   A +F L                   
Sbjct: 474 HLAGRGAFDIEALGWEAAIALTQPAEPEVPPLTSEAALFDLTPEDLAGVRIRREKRSKGV 533

Query: 528 -------------------LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
                                    +   L+  ++K +   L R + +L IRHVG   +R
Sbjct: 534 PTGEYELVPYFYSKGTAKSPSRPTATTEKLFKELDKAKTQPLWRVLVALSIRHVGPRASR 593

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
           +LA  + S     Q               L  V  VG  IA A+ E++    +   V+  
Sbjct: 594 ALATAFGSMDAIRQASE----------EELAHVDGVGPTIAAALKEWFAEDWHREIVDRW 643

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
                      ++++   +E   +V TG+L    R +A+E +   G   +  +S+ T  +
Sbjct: 644 AAAGVRMKDERDESMPRTLEGLTVVVTGSLPNFSRDEAKEAILVRGGKAAGSVSKNTSYL 703

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + G++ G+KL+KA+QLG+ +++E+ F  LL 
Sbjct: 704 VAGESAGTKLDKAEQLGIPVLDEDGFRQLLA 734


>gi|209545276|ref|YP_002277505.1| NAD-dependent DNA ligase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532953|gb|ACI52890.1| DNA ligase, NAD-dependent [Gluconacetobacter diazotrophicus PAl 5]
          Length = 708

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 279/716 (38%), Positives = 410/716 (57%), Gaps = 34/716 (4%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +    L+  QA  EL  L Q+I   D  YY+   P + D+EYDAL++R  AI   FPDL 
Sbjct: 14  LDPSELTEPQAMVELERLAQQIRALDRAYYEDDAPTVTDAEYDALRQRNLAIEARFPDLR 73

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS- 125
           R+   + P   + G  + +  +  H +P LSL+ ++  ED   F+TR  RF    DD + 
Sbjct: 74  RA---DSPSLHVSGAPSAAFGRHRHLVPMLSLDNVFGREDFESFVTRAARFLGLNDDQAR 130

Query: 126 -IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + F  EPKIDG  I++ YE G+FV    RGDG  GEDV+A +R +  +P  L    P +
Sbjct: 131 ALRFVAEPKIDGLSISLTYEHGRFVRGTTRGDGTEGEDVTANLRTLRDVPLRLKGPAPAL 190

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           IE+RGEV++SK  FL++N      G+KP+ANPRNAA+G LR+L+P     R L+ F +  
Sbjct: 191 IEIRGEVFLSKPAFLSINAAQAEAGQKPFANPRNAAAGSLRQLDPNITARRPLSLFAYAQ 250

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G +S+  A   ++ L+++R  GF VN       +     ++ + +   RS L YDIDG+V
Sbjct: 251 GFSSDRVADTHWDYLERLRQWGFTVNPLSCVVESAEAAEAFMDRIARERSGLEYDIDGVV 310

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD+ +LQ +LG   R+PRW I+ KF  +QA TRL  I+IQ+GRTG LTPVA LEPVN+
Sbjct: 311 YKVDDLALQDRLGFVGRAPRWAIAWKFPAEQAITRLTRINIQVGRTGALTPVAILEPVNV 370

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ER 421
           GG ++T ATLHNED I             +D+RVGD V ++RAG+VIP+++ ++    + 
Sbjct: 371 GGVIVTRATLHNEDEIAR-----------KDVRVGDLVQIQRAGDVIPQILGVVPPGADA 419

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            P  + F FP  CPIC +R  R             RCTGGL C AQ +ERL HFVSRDAF
Sbjct: 420 PPRGEAFIFPHTCPICGARAERPPGE------VVWRCTGGLTCPAQVVERLIHFVSRDAF 473

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I+GLG++ +  F         ++ PADIF L   +      I    G+G VS  NL  S
Sbjct: 474 DIDGLGERTITEFHAD----GLLKTPADIFRLPDHEA----DIATREGWGTVSARNLTAS 525

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +  R+ I L RFI++LGIR +G   AR LA++Y SY ++ +++       +D+ L+L  +
Sbjct: 526 VRARQTIPLARFIYALGIRRIGTSNARLLARHYGSYTHWREQMLRATTIGSDERLALGSI 585

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G  IA  +  F+    N+  ++ L   ++             +  K +VFTGTL  +
Sbjct: 586 TGIGGAIADELAAFFMEAHNLETLDDLTAMLTAIEDEDLPAQGH-LSGKTVVFTGTLTTM 644

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            R +A+    +LGA V+  +S+KTD++++G + GSK  KA +LG+  ++EE +  L
Sbjct: 645 TRPEAKAIAERLGARVTDSVSKKTDLVVLGADAGSKARKAAELGIDTLDEEGWREL 700


>gi|318040766|ref|ZP_07972722.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CB0101]
          Length = 690

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 216/722 (29%), Positives = 343/722 (47%), Gaps = 49/722 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    S+       + L Q ++     YY    P + D  YD L R    +  A P+L  
Sbjct: 4   PAPDESLAAPHARAAELRQLLNRAAHAYYVLDAPEMEDPVYDRLYRELLDLETAHPELIA 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++GG        V H I  LSL+  +N  +L  +  R+ +   ++   ++ 
Sbjct: 64  ---PDSPTQRVGGAPAEGFQSVQHRIGLLSLDNAFNTGELEAWYARLLKVLDREPAAALP 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIE 186
              E KIDG  + + YE G  V AA RGDG  GE+++A +R I ++P  L   + PE +E
Sbjct: 121 MVGELKIDGNALALSYEHGVLVRAATRGDGEQGEEITANVRTIGSVPLRLQLEHPPEWLE 180

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245
           VRGE +I    F A+N E  + G   +ANPRNA +G LR+L+P     R L+FF + L  
Sbjct: 181 VRGEAFIPDGTFTAINAERESRGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHL 240

Query: 246 TSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                    Q+E LQ ++  GF VN           + +++    + R  L Y  DG+V 
Sbjct: 241 PPGTQGPASQWESLQWLKAAGFKVNPNAELLPDLAAVEAFFERWDTGRRQLDYATDGVVV 300

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+++ +LQ   G   ++PRW I+ K+  ++A ++LL +  Q+GRTG++TPVA  EPV + 
Sbjct: 301 KLNDLALQDAAGFTQKAPRWAIALKYPAEEAPSKLLRLACQVGRTGVVTPVAEFEPVPLA 360

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ ATLHN D +  L           D+  GD ++V++AGE+IP+VV ++   R   
Sbjct: 361 GTSVSRATLHNADRLVEL-----------DLHAGDTIVVRKAGEIIPEVVRVLAELRPAG 409

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           AQ    P  CP C S +VR+         AA RC    +C A     L+H+VS+ A +++
Sbjct: 410 AQRLELPHTCPECGSELVREEGE------AATRCVNS-SCPAILRGALRHWVSKGALDVD 462

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG + ++           +   AD++ L      S      +   G  S  NL  ++  
Sbjct: 463 GLGSKLIEQLVDR----GLVGSIADLYRLDGALLAS------LERMGSKSADNLVAALAA 512

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +     R ++ LGI HVG   A++LA  + S    A           D    +  V  +
Sbjct: 513 SKAQPWNRQLYGLGIHHVGEVNAKTLASAFPSAAELATA-------ATDTPELITAVYGI 565

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEV--------SPSIGRHEKNVSSEIENKKLVFTG 656
           G  IAQ++ +++    N   +  L +            +        S+++  +  V TG
Sbjct: 566 GGEIAQSLQQWFATAANQELLSQLERLGFSLATSDEELAAAAERSAASAQLNGQTFVLTG 625

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  + R +A+  +   G  VS  +S+KT  ++ GD  GSKL KA+ LGV +++E     
Sbjct: 626 TLPSMSRSEAKALIEAAGGKVSGSVSKKTSYVVAGDEAGSKLSKAESLGVAVLDEAGLQA 685

Query: 717 LL 718
           LL
Sbjct: 686 LL 687


>gi|81749525|sp|Q8FPZ7|DNLJ_COREF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|23493177|dbj|BAC18148.1| putative DNA ligase [Corynebacterium efficiens YS-314]
          Length = 938

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 224/714 (31%), Positives = 349/714 (48%), Gaps = 50/714 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
              Q R+  + L +++ YH D YY   +P I D+++DAL R+   +    P+LA    P+
Sbjct: 264 DNAQLRRTWNELAEKVRYHRDLYYNQ-QPEIPDADFDALFRQLQDLEEQHPELAV---PD 319

Query: 73  GPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            P  ++G  +    S   V H    LSL+ +++ E+LR ++ R           +  +  
Sbjct: 320 SPTKEVGAPVTEQSSFDNVEHLERMLSLDNVFDEEELRDWLART---------PAKRYLT 370

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR----VLSLNIPEIIE 186
           E KIDG  I + Y  G    AA RGDG  GED++A  R I  IP          IP ++E
Sbjct: 371 ELKIDGLSIDLVYRNGMLERAATRGDGRVGEDITANARVIGDIPHELTATEEYPIPAVLE 430

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245
           VRGEV+I   DF  +N + I  G KP+ANPRNAA+G LR+ NP D   R L    HG+G 
Sbjct: 431 VRGEVFIPIEDFADVNAQRIEDGGKPFANPRNAAAGSLRQKNPEDVKKRRLRMITHGIGY 490

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           +       Q++    +   G P ++      T   +V         R    +++DGLV K
Sbjct: 491 SEGFQPASQHDAYLALAAWGLPTSSYTEAVETADAVVDKVLYWADHRHDALHEMDGLVIK 550

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ + Q+ LG  +R+PRW I++K+  ++ +T+L+DI + +GRTG +TP A +EPV + G
Sbjct: 551 VDDIASQRALGSTSRAPRWAIAYKYPPEEVTTKLIDIKVSVGRTGRVTPFAMMEPVFVAG 610

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + ++ ATLHN+  +K            + + +GD V+V++AGEVIP+V+  +V  R    
Sbjct: 611 STVSMATLHNQSEVKR-----------KGVLIGDTVVVRKAGEVIPEVLGPVVELRDGTE 659

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F FP  CP C S +            A  RC    +C  Q  +RL +   R AF+IE 
Sbjct: 660 REFVFPEHCPECGSTLAPTRAE-----DADWRCPNTRSCPGQLSQRLTYIAGRGAFDIEA 714

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++      ++      +   A +F L       +       G  + S   L  ++ +R
Sbjct: 715 LGEKGAQDLIRN----GILVDEAGLFDLTEEDLLESDVYTTKAGAVNASGRKLLANLEQR 770

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L R + +L IRHVG   AR+LA  Y S Q                   L     VG
Sbjct: 771 KNTDLWRVLVALSIRHVGPTAARALAGRYRSMQKLVDAP----------VDELAETDGVG 820

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            IIAQ+  ++++   +   V+              + +   +E   +V TG L+   R  
Sbjct: 821 MIIAQSFKDWFEVDWHRAIVDTWAAAGVTMEDAETEQLEQTLEGLTIVVTGGLEGFTRDS 880

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +E +   G   S  +S+KTD ++VG+N GSK  KA++LG+ I++EE F+ LL 
Sbjct: 881 VKEAIISRGGKASGSVSKKTDYVVVGENAGSKATKAEELGLTILDEEAFVRLLD 934


>gi|120434999|ref|YP_860685.1| DNA ligase [Gramella forsetii KT0803]
 gi|166215777|sp|A0LZ23|DNLJ_GRAFK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|117577149|emb|CAL65618.1| DNA ligase [Gramella forsetii KT0803]
          Length = 664

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 222/707 (31%), Positives = 358/707 (50%), Gaps = 47/707 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  K++  L +E+  H+  YY   KP I D E+D   +    +   +P+    ED N P 
Sbjct: 2   EVEKKIRGLREELQQHNYNYYVLDKPQISDYEFDIKLKELQELEEKYPEF---EDDNSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +  +   V H     SL   ++ E+L ++  R+ +  +      I +  E K D
Sbjct: 59  RRVGGAVTKNFETVVHENRMYSLSNSYSKEELEEWEARLKKIVE----GKIQYVCELKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I++ YE G    A  RGDG  G+DV+  I+ I ++P  L    P   ++RGE+ +  
Sbjct: 115 GASISLTYENGILKRAVTRGDGFQGDDVTNNIKTIRSVPLKLKDEFPHKFDIRGEIVLPY 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
             F  +N E + +G +PYANPRN ASG L+  +  ++ R     +             Q+
Sbjct: 175 EGFAKMNAERVEMGEEPYANPRNTASGSLKLQDSAEVARRPLECLLYSITGENTGVASQF 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+K R  GF V       ++   ++ Y N     R  LPY+ DG+V KV+ F  Q++L
Sbjct: 235 EGLEKARKWGFKVPAESELKDSIEEVLHYINYWDEHRHDLPYETDGVVVKVNNFHQQEEL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  +Q ST+L  I  Q+GRTG +TPVA L+ V + G ++  A+LHN
Sbjct: 295 GHTAKSPRWAIAYKFKAEQESTKLNKITYQVGRTGAITPVANLDAVQLAGTVVRRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L           D+R GD V V++ GE+IPK+V +   +R PD+ P  + + CP
Sbjct: 355 ADQIEKL-----------DVREGDTVFVEKGGEIIPKIVGVDFTKRDPDSNPTQYATNCP 403

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S ++R          A H C     C  Q + R++H++SR A +IEGLG + +    
Sbjct: 404 ECDSELIRKDGE------AQHYCPNVNGCPPQIIGRIQHYISRKAMDIEGLGGETVALLV 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                A  I   AD++ LQ+       ++  +    + S  NL + I + + I  ER +F
Sbjct: 458 N----ADLIESYADLYKLQKE------EVLPLERMAEKSAENLINGIERSKEIPFERVLF 507

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR+VG  +A+ LAK++ S +                   L+ +  +G+ IA ++VEF
Sbjct: 508 ALGIRYVGETVAKKLAKHFKSIEALMAASE----------EELVNIDEIGERIAWSVVEF 557

Query: 616 YQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +    N   VE L +             N ++ +E    V +G  +K+ R+  ++ +   
Sbjct: 558 FNIEANRENVERLKEYGIQLEISAEKLANQTNILEGNTFVISGVFEKVSRNDLKKMIEDN 617

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           G  +S+ +S KT+ ++ GDN G SKL KA++LG  I++EE FL +L+
Sbjct: 618 GGKLSSSISSKTNYLVAGDNMGPSKLAKAEKLGTSIISEEDFLKMLE 664


>gi|226305867|ref|YP_002765827.1| NAD(+)-dependent DNA ligase [Rhodococcus erythropolis PR4]
 gi|254781402|sp|C0ZXK3|DNLJ_RHOE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226184984|dbj|BAH33088.1| NAD(+)-dependent DNA ligase [Rhodococcus erythropolis PR4]
          Length = 700

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 219/723 (30%), Positives = 355/723 (49%), Gaps = 42/723 (5%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR++ + L +E+  H   YY    P+I D  +D L  + +A+   +PDL     P+ 
Sbjct: 12  PNEAREQWTELAEEVRQHQFRYYVRDAPVISDGAFDTLLGQLNALEEQYPDL---RTPDS 68

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +GG        V H    LSL+ +++  +LR +I ++     ++    + +  E K
Sbjct: 69  PTQLVGGGFATDFTSVDHLERMLSLDNVFDESELRGWIAKVE----QETGPELHYLCEVK 124

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRG 189
           IDG  + + YE GK V AA RGDG +GE V+     I  IP  L+      IP ++EVRG
Sbjct: 125 IDGVALNLVYENGKLVRAATRGDGRTGELVTLNALTINDIPERLTATDEFPIPTLLEVRG 184

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EV+    DF ALN  ++  G+ P+ANPRN+A+G LR+ NP     R L    HG G+   
Sbjct: 185 EVFFRLEDFAALNASLVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGFGRMEG 244

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                QY+    +   G PV+    +      +V         R  + ++IDGLV KVDE
Sbjct: 245 FEPASQYDAYVALAAWGLPVSTHTSRVVGADAVVEKMKYWGEHRHDVEHEIDGLVVKVDE 304

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SL ++LG  +R+PRW I++K+  ++ +T+LLDI + +GRTG +TP A +EPV + G+ +
Sbjct: 305 MSLHRRLGTTSRAPRWAIAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVTVAGSTV 364

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN   +K            + + +GD V++++AG+VIP+V+  + + R    + F
Sbjct: 365 SLATLHNGSEVKR-----------KGVLIGDTVVLRKAGDVIPEVLGPVADVRDGTEREF 413

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C + +         +     RC     C AQ  ER+ H   R AF+IE LG 
Sbjct: 414 VMPTHCPECGTLLA-----PAKEGDVDVRCPNQQHCPAQLRERVFHVSGRGAFDIEVLGY 468

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +      +++     I    D+F+L   +           G    +   L  +++  ++ 
Sbjct: 469 EAATGLLEAK----VIGDEGDLFSLDAEKLIEVPIFRTNAGALSANGKRLLANLDSAKDK 524

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L R + +L IRHVG   AR+LA  + S Q   +               L  V  VG  I
Sbjct: 525 PLWRVLVALSIRHVGPTAARALAGEFGSLQRIREA----------SVDELAAVDGVGSTI 574

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A A+VE++    +   V+             + ++   +E   +V TG+L+   R +A+E
Sbjct: 575 AAAVVEWFSVDWHQQIVDKWASAGVRMEDERDDSIPRNLEGLSIVVTGSLETYSRDQAKE 634

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIH 728
            +   G   +  +S+KT  ++VG+ PGSK +KA +LGV +++E+ F  LL+     +   
Sbjct: 635 AILVRGGKAAGSVSKKTAFVVVGEAPGSKHDKAVELGVPVLDEDGFRRLLEDGPDAVAPT 694

Query: 729 DDD 731
           D D
Sbjct: 695 DLD 697


>gi|329912476|ref|ZP_08275756.1| DNA ligase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545605|gb|EGF30768.1| DNA ligase [Oxalobacteraceae bacterium IMCC9480]
          Length = 679

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 262/696 (37%), Positives = 380/696 (54%), Gaps = 47/696 (6%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
             H   YY    P+I D++YD L R  +A+  + P+L  +   + P  ++G        +
Sbjct: 21  DRHAHAYYVLDNPVIPDADYDLLFRELEALEASHPELVTA---DSPTRRVGAPPLPEFVQ 77

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V HS+P LSL   +  ED+  F  R+    Q      + +  E K DG  I +RYE G  
Sbjct: 78  VRHSVPMLSLSNGFADEDVIGFDRRVRDGLQIA--GEVAYATELKYDGLAINLRYENGVL 135

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           V AA RGDG +GE+V+  IR I  IP    +   P II+VRGEV + K DF +LN    A
Sbjct: 136 VEAATRGDGSTGENVTVNIRTIRGIPLRLHTDTPPAIIDVRGEVLLYKADFASLNARQRA 195

Query: 208 VGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK-TSEIFAKGQYEMLQKMRCLG 265
            G K +ANPRNAA+G LR+L+      R L FF +G+G             +L   R LG
Sbjct: 196 AGLKEFANPRNAAAGSLRQLDSRITAQRALRFFAYGIGTLEGVAMPDSHSGLLDWYRALG 255

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
            PV +  +  +   G++ +Y E+ + R++LPY+IDG+VYKVD+   Q+QLG  AR+PR+ 
Sbjct: 256 IPVCDERKVVHGAAGLLDFYREIGAKRASLPYEIDGVVYKVDDAVQQQQLGFVARAPRYA 315

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           ++HKF  ++AST +  ID+Q+GRTG +TPVARL PV +GG ++TNATLHNED ++     
Sbjct: 316 LAHKFPAEEASTVVQGIDVQVGRTGAITPVARLAPVAVGGVIVTNATLHNEDEVRR---- 371

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  +DIR+GD V+V+RAG+VIP+VV  I + R PD Q F  PS CP+C S +VR  
Sbjct: 372 -------KDIRIGDTVIVRRAGDVIPEVVAFIADLRGPDVQEFVMPSACPVCGSAIVRLE 424

Query: 446 NPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
           +       A  RC+G  + C+AQ+   L HFVSR A +IEGLG+Q +      E     I
Sbjct: 425 DE------AIARCSGGWIKCAAQRKGGLLHFVSRRAMDIEGLGEQLVVQLVDRE----VI 474

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           R PAD++ L          +  +    D S  N+  ++ K ++ +L RFI++LGIRHVG 
Sbjct: 475 RTPADLYKL------GLVGLSELARMADKSARNVLAALEKSKSTTLARFIYALGIRHVGE 528

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             A+ LA ++                       L+ V  VG ++A +I+EF+ +P N+  
Sbjct: 529 ATAKELAAHFGQLDIVLAATE----------EQLLEVADVGPVVACSILEFFADPLNVEL 578

Query: 625 VEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           VE L       +     + VS     K  V TGTL  + R +A   +   G  V+  +S+
Sbjct: 579 VEQLRAAGVHWTEHAGRQVVSLPQSGKTFVLTGTLPTLGRDEAAALIEAAGGKVAGSVSK 638

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           KT  ++ G + GSKL KAQ+LG+ I++E   L LL+
Sbjct: 639 KTSYVVAGSDAGSKLAKAQELGLAILDEAGLLQLLK 674


>gi|255281707|ref|ZP_05346262.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469]
 gi|255267774|gb|EET60979.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469]
          Length = 674

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 211/708 (29%), Positives = 348/708 (49%), Gaps = 48/708 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++E  ++++  L + + YH D YY    P I D EYD +     ++    P+L     P 
Sbjct: 4   TVETIQQKIEELRKTLEYHSDRYYNQDNPEISDYEYDQMMLELKSLEKEHPELI---TPE 60

Query: 73  GPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P   +GG     +   V H +P LSL  +++ E++  F+  +          +  F +E
Sbjct: 61  SPTQHVGGTAKREAGVLVKHRVPMLSLADVFSREEVDAFVQDMQ-----AQFGNPEFVVE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
            KIDG  + +RY  G    A  RGDG   GEDV+   R I  +   L   IP + E+RGE
Sbjct: 116 TKIDGLSMALRYTDGVLTTAITRGDGIIQGEDVTENARVIKDVKTRLKHPIPYL-EIRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249
           VY++   F  +N++   +G+K +ANPRN A+G LR+L+      R L+ FV  + +T   
Sbjct: 175 VYMTDAAFEKVNEKQELLGKKLFANPRNCAAGTLRQLDSRITKERELSLFVFNIQETQGR 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E  + ++  G  V +  +   T   + +   E+ S+R  L YDIDG V K++  
Sbjct: 235 EFTTHTEGYEYLKSNGIRVIDHYKVCRTADEVWNAIEEIGSMRGELGYDIDGAVVKLNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + +  +G  ++ PRW +++K+  ++  + LLDI++ +GRTG +TP A  EPV + G  ++
Sbjct: 295 AQRAIVGATSKVPRWAVAYKYPPEEKESVLLDIELSVGRTGRITPTAVFEPVRLCGTSVS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+D+I  L           DI +GD ++V ++GE+IPK+  +   +R   A+ F 
Sbjct: 355 RATLHNQDFIDDL-----------DICIGDTIVVYKSGEIIPKIRAVKKEKRPQGAKRFR 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C +  VR+ +       A  RCTG   C AQ    + +FV RDA +I+G G  
Sbjct: 404 IPDVCPVCGAPAVREKD------TADIRCTGS-NCPAQLERHIINFVGRDAMDIKGFGAN 456

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +    +       ++  ADIF+L+  ++    +        + +   L  +I   +   
Sbjct: 457 YIIELVR----LGYLKNVADIFSLKEHREELIEQGII---GKEKNTDKLLKAIEDAKANQ 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            +R +  LGI+ VG   ARSL  ++ + +  A                L  V  +G I A
Sbjct: 510 PDRLLTGLGIQGVGKATARSLMSHFGTIEKLAGASQ----------EELESVSDIGSISA 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +AI  ++  P N   +E L           E+   +    K  V TGTL  + R +A   
Sbjct: 560 EAIRSYFAEPDNRRLLEKLRDAGVNMEAEQEE-AGTVFAGKTFVVTGTLPTMGRSEAVSL 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           + +LG   +  +S+KT  ++ G+N GSKL KAQQLG+ +++E +FL +
Sbjct: 619 IQKLGGKAAGSVSKKTSYVLAGENAGSKLTKAQQLGIPVIDEAEFLEM 666


>gi|160902460|ref|YP_001568041.1| DNA ligase, NAD-dependent [Petrotoga mobilis SJ95]
 gi|190359269|sp|A9BJX5|DNLJ_PETMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160360104|gb|ABX31718.1| DNA ligase, NAD-dependent [Petrotoga mobilis SJ95]
          Length = 668

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 233/708 (32%), Positives = 374/708 (52%), Gaps = 45/708 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            +  ++    L+ EI  H+  YY  + PII D EYD L +    +   +P+L     P+ 
Sbjct: 4   PKNIKERYEKLKAEIEEHNYRYYVLADPIISDQEYDKLFKELVELEKKYPELK---TPDS 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  +IGG +     KV H IP LSL+  +N E++  F  R+ +       N + +  E K
Sbjct: 61  PTQRIGGIVVEGFNKVNHLIPMLSLDNTYNEEEILDFHKRVLKNLSL---NHVEYFCELK 117

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  + +RY  G    A  RGDG +GED++  ++ IP+IP  L  N+   IEVRGE+Y+
Sbjct: 118 IDGVSVALRYTDGVLTQAITRGDGTTGEDITQNVKTIPSIPLRLRENL--TIEVRGEIYM 175

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAK 252
            K +F+ +N E    G   +ANPRNA +G L+ L+ T+   R L+ F++ +        +
Sbjct: 176 PKKEFVRINSEREEKGLPVFANPRNATAGTLKLLDSTEVAKRKLSSFMYYVIFPQNYNLE 235

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E +  ++ +GF +N   + A     ++ ++ E    R  L Y++DG+V KV+ F LQ
Sbjct: 236 TQEEAINFLKEVGFRINPNYKNAQDIGQVIEFWKEWNRRRKELEYEVDGIVVKVNSFELQ 295

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LGE ARSPRW I+ KF  +Q  T+L  I +Q+G TGI+TPVA  +P+ + G ++  A+
Sbjct: 296 RLLGETARSPRWAIAFKFEAEQKETKLKAIKLQVGSTGIITPVAEFDPIQLEGTIVKRAS 355

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DY+K            RDIR GD VL+++AG +IP+V+  +  +R  + +    P 
Sbjct: 356 LHNFDYLK-----------ERDIREGDYVLIEKAGGIIPQVIGPVKEKRTGEEKIIRPPE 404

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C  +V      K      A RC    +C  + L  L++FVSR+A NI+GLG + L 
Sbjct: 405 KCPVCGGKVG-----KIKSSEVAIRCLNP-SCPEKLLRTLENFVSRNAMNIQGLGPKILK 458

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                   A  ++  AD++ L  ++  S        G GD +V N+   I + +N  L+R
Sbjct: 459 RMVD----AGLLKDIADLYYLNEQKIRSLG-----EGIGDKTVENILTQIEQSKNRELDR 509

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            I +LGI +VG++ A+ LA ++ +  +               +  L+ +  +G+ IA AI
Sbjct: 510 LINALGIPNVGSKTAKDLANHFKNLDSLIDA----------KFDELVEIEGIGEDIANAI 559

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++F+        V+ L         + E+ +   ++   +  TG L K+ R +  EYV  
Sbjct: 560 IKFFSQEEVKKIVKKLKDAGVNMGKKEEEKLEGPLKGLVICQTGALSKMTRQEFAEYVES 619

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            G   S  +++KT+I++VG+NPGSKL+KAQ  G+ IM+EE+F     +
Sbjct: 620 KGGTFSENVTKKTNILVVGENPGSKLDKAQSYGITIMSEEEFFDKYGE 667


>gi|296270799|ref|YP_003653431.1| NAD-dependent DNA ligase [Thermobispora bispora DSM 43833]
 gi|296093586|gb|ADG89538.1| DNA ligase, NAD-dependent [Thermobispora bispora DSM 43833]
          Length = 732

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 228/739 (30%), Positives = 360/739 (48%), Gaps = 62/739 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R   + L + I   +  YY    P + D+EYDA  R    +   +PDL     P+ P  K
Sbjct: 18  RDRHAELAELIEEANWRYYVLDSPTVSDAEYDAWMREIRELEERYPDL---RTPDSPTQK 74

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG ++     VTH     SL+  ++ EDL  +  RI R +         F  E KIDG 
Sbjct: 75  VGGAISTEFTPVTHLRRLESLDNAFSDEDLAAWHARIQRLYGADVG---PFLCELKIDGL 131

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196
            + + YE G+ V AA RGDG +GED++  IR I  +P  L+ + +P ++EVRGEV++   
Sbjct: 132 AVALVYENGRLVRAATRGDGRTGEDITPNIRTIRNVPHRLTGDGVPSLLEVRGEVFLPVE 191

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEIFAKGQ 254
            F  LN++++  G++P+ANPRNAA+G +R+ +P     R L   VHG+G        + Q
Sbjct: 192 GFRRLNEQLLDAGKQPFANPRNAAAGSVRQKDPRVTAQRPLKMIVHGVGVWEGGDPPESQ 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             + +++R LG PV+   R      GI  Y    +  R    Y+IDG+V KVD  ++Q+ 
Sbjct: 252 SAVYERLRELGLPVSERYRVVEDLGGIREYIAYYREHRHDPEYEIDGVVAKVDRIAVQRA 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW I+ K+  ++ +T+LLDI + +GRTG +TP A ++PV + G+ +  ATLH
Sbjct: 312 LGSTSRAPRWAIAFKYPPEEVTTKLLDIQVGVGRTGRVTPYAVMKPVVVSGSTVERATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   +K            + + +GD V++++AG+VIP++V  +V+ R    + F  P+ C
Sbjct: 372 NAFEVKR-----------KGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGSEREFVMPTHC 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C +R+  +      +  A  RC    +C AQ  ER+     RDA +IEGLG       
Sbjct: 421 PECGTRLAYER-----EGDADLRCPNTKSCPAQLRERIFFAAGRDALDIEGLGYVAASAL 475

Query: 495 FKSEDP-AFSIRIPADIFTLQRRQ------------------------QTSTTKIENILG 529
            +   P    IR  AD+F L   +                            +    + G
Sbjct: 476 TQPLPPQEPPIRTDADLFDLTMDRLLPIKTVVRDPDTGLPKLDPQTGEPKVVSFFATVSG 535

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
               +   L + + + +   L R + +L IRHVG   AR+LA+++ S    A      +A
Sbjct: 536 APSKNAEKLLEQLEQAKQRPLWRILVALSIRHVGPPTARALAEHFRSIDAIAAASEEELA 595

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--I 647
                         +G +IA AI E++    +   +E                      +
Sbjct: 596 AVE----------GIGPVIAAAIKEWFSVDWHREIIERWRAAGVRMADEEPAVPEGPRPL 645

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
           E    V TGTL    R +A E +T  G  V++ +S+KTD ++VG+NPGSK  KA +LG+ 
Sbjct: 646 EGLTFVITGTLSGYTRDEAGEAITSRGGRVASSVSKKTDFVVVGENPGSKYAKAVKLGIP 705

Query: 708 IMNEEQFLFLLQQYNTTLR 726
            ++E+ F  LL++     R
Sbjct: 706 RLDEQGFQVLLEKGPDAAR 724


>gi|29829290|ref|NP_823924.1| NAD-dependent DNA ligase LigA [Streptomyces avermitilis MA-4680]
 gi|81719851|sp|Q82JK7|DNLJ_STRAW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|29606397|dbj|BAC70459.1| putative DNA ligase [Streptomyces avermitilis MA-4680]
          Length = 730

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 216/736 (29%), Positives = 351/736 (47%), Gaps = 61/736 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR++ + L ++I  H   YY    P++ D+E+D L R  +A+   +P+L     P+ 
Sbjct: 13  PAEAREKHAQLAEQIEEHRFRYYVKDAPVVSDAEFDTLLRSLEALEEEYPEL---RTPDS 69

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G        V H    LSL+  ++   L  +  R+ +     D +   F  E K
Sbjct: 70  PTQKVAGGYETEFTAVQHRERMLSLDNAFDDLGLAAWAERVAKDVGTSDYH---FLCELK 126

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG +GED++  +R I  IP  L  +  P+++E+RGEVY
Sbjct: 127 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLKGDRIPDLVEIRGEVY 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G       
Sbjct: 187 FPMEKFEELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGARQGFDI 246

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               +  + +R  G P     R  +   G+  +       R ++ ++IDG+V K+DE  L
Sbjct: 247 DRLSQAYELLREWGLPTTRYARVVDDLDGVREFIAYYGENRHSVEHEIDGVVVKLDEIPL 306

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ +  A
Sbjct: 307 QGRLGSTSRAPRWAIAWKYAPEEVNTKLINIRVGVGRTGRVTPYAQVEPVTVAGSEVEFA 366

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D +K            + + +GD V++++AG+VIP+++  +V+ R    + F  P
Sbjct: 367 TLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTERAFVMP 415

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK--- 488
           + CP C + +         +     RC     C AQ  ERL +   R + +IE  G    
Sbjct: 416 AECPECGTPLA-----PAKEGDVDLRCPNARTCPAQLRERLFYLAGRKSLDIEQFGYVAA 470

Query: 489 ---------------QQLDFFFKSEDPAFSIRIP--ADIFTLQRRQQTSTTK-----IEN 526
                           + D F  + +    I+         L +R   +  +       N
Sbjct: 471 AALTKPLEPAEPPLLDEGDLFDLTIERLLPIKAYVLDQDSGLPKRDPKTGEEKVATVFAN 530

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             G    +  ++ D+I   +   L R +  L IRHVG   A +LA+ + S     Q    
Sbjct: 531 QQGEPRKNAISMLDNIAAAKERPLARILTGLSIRHVGPVAAEALARAFRSIDRIDQATE- 589

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVS 644
                      L     VG I+A A+ +++    +   +                E    
Sbjct: 590 ---------EELKDTDGVGPIVAAAVKQWFAEDWHREIIRKWKAAGVRMEDERSGEDEGP 640

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA QL
Sbjct: 641 RPLEGLTVVVTGTLEHHTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQL 700

Query: 705 GVKIMNEEQFLFLLQQ 720
            V ++NE  F  LL+Q
Sbjct: 701 KVPVLNEAGFAVLLEQ 716


>gi|227503896|ref|ZP_03933945.1| NAD-dependent DNA ligase LigA [Corynebacterium striatum ATCC 6940]
 gi|227199519|gb|EEI79567.1| NAD-dependent DNA ligase LigA [Corynebacterium striatum ATCC 6940]
          Length = 680

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 208/709 (29%), Positives = 342/709 (48%), Gaps = 49/709 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +++ S L QE+  H + YY   +P I D+++D L +R   +    P+LA    P+ P 
Sbjct: 12  DIQRKWSELAQEVRKHRELYYN-GEPSIPDADFDELFQRLLKLEAEHPELAV---PDSPT 67

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G         + H     SL+ ++N  +++ ++ R           +  +  E KID
Sbjct: 68  QQVGAAP-EGAADIEHLERLYSLDNVFNESEMQDWLDRT---------PAQTYLTELKID 117

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEV 191
           G  I + Y  GK   AA RGDG  GED++A  + I  IP  LS       P ++EVRGEV
Sbjct: 118 GLSIDLVYRDGKLTTAATRGDGRVGEDITANAKVITDIPHELSGTDEYPVPALVEVRGEV 177

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+  ++F  +N      G+  +ANPRNAA+G LR  +P +   R L+   HG+G      
Sbjct: 178 YMRPDEFAEINAARREDGKPTFANPRNAAAGGLRMKDPNEVKKRRLHMVCHGIGARDGFQ 237

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q++  Q +   GFPV+   +Q  +   +          R    +++DGLV KVD+ +
Sbjct: 238 PSSQHDAYQALEAWGFPVSPYTKQVKSAAAVQKEIKHWAEHRHDAYFEMDGLVVKVDDLA 297

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  +R+PRW I++K+  ++ +T+LLDI++ +GRTG +TP A +EPV + G+ ++ 
Sbjct: 298 SQRALGATSRAPRWAIAYKYPPEEVTTKLLDIEVGVGRTGRITPFAVMEPVFVSGSTVSK 357

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+  +K            + + +GD +++++AGE+IP+V+  ++  R      + F
Sbjct: 358 ATLHNQFEVK-----------NKGVMIGDTIIIRKAGEIIPEVLGPVLELRDDSVYEWVF 406

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C +++               RC    +C AQ   RL++  SR   +IE LG++ 
Sbjct: 407 PENCPSCGTKLA-----PQKDGDQDWRCPNTRSCPAQLSARLEYLASRKGMDIEALGEKA 461

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                +S      +   AD+F L   +   ++      G  +     L  ++   R    
Sbjct: 462 AVDLIES----GVLVDEADLFDLDEEKLLKSSAYTTKAGKLNAQGKKLLKNLESARQTDF 517

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + SL IRHVG   AR+LA  Y S +       +           L     VG IIA 
Sbjct: 518 WRVLVSLSIRHVGPIAARALATRYRSMEALRAASES----------ELADTDGVGGIIAA 567

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +   +++   +   VE              +     +E   +V TGTL+   R  A+E +
Sbjct: 568 SFKAWFEEDWHRNIVEKWAAAGVTMEDTATEQHEQTLEGLTIVVTGTLENFSRDSAKEAI 627

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G   S  +S+KTD ++VG+N GSK  KA++LG+ I++E  F  LL+
Sbjct: 628 ITRGGKASGSVSKKTDYVVVGENAGSKETKARELGLTILDEAGFQRLLE 676


>gi|88809499|ref|ZP_01125007.1| DNA ligase [Synechococcus sp. WH 7805]
 gi|88786718|gb|EAR17877.1| DNA ligase [Synechococcus sp. WH 7805]
          Length = 692

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 218/728 (29%), Positives = 360/728 (49%), Gaps = 56/728 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++  + L Q ++     YY    P + D+ YD L R    +  A P+L  +   + P  +
Sbjct: 2   QERAAELRQLLNRAAHAYYVLDAPDLEDAVYDRLYRELLDLESAHPELVEA---DSPTQR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NSIFFTLEP 132
           +GG        VTH +P  SL+  ++ ++LR + TR+ +   ++        ++    E 
Sbjct: 59  VGGSPAEGFRSVTHRVPLFSLDNAFSADELRGWYTRLIKVLDREPPSDSPLPALAMVGEL 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEV 191
           KIDG  + + YE G  V AA RGDG  GE+++A +R I +IP  L   + P  +EVRGE 
Sbjct: 119 KIDGNALALSYENGVLVRAATRGDGDQGEEITANVRTIASIPLRLHLDHPPAWVEVRGEA 178

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEI- 249
            I  + F A+N E  A     +ANPRNA +G LR+L+P     R L+FF + L    E  
Sbjct: 179 LIPDSTFAAINGERAARDEPLFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPEEWS 238

Query: 250 --FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 Q+E L+ +   GF VN           +  ++++  S R  L Y  DG+V K++
Sbjct: 239 GQRPASQWESLRWLEDAGFRVNPNAALLPNLEAVEQFFSDWDSRRHDLNYATDGVVVKLN 298

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +  LQ   G   ++PRW I+ K+  ++A +RLL +  Q+GRTG++TPVA  EPV++ G  
Sbjct: 299 DLRLQDAAGFTQKAPRWAIALKYPAEEAPSRLLKLTCQVGRTGVVTPVAEFEPVSLAGTS 358

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN D ++ L           D+  GD ++V++AGE+IP+V+ ++   R   A P
Sbjct: 359 VSRATLHNADRLQEL-----------DLHSGDTIIVRKAGEIIPEVLRVLPELRLEGALP 407

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C S +VR+         AA RC    +C A     L+H+VS+ A +++GLG
Sbjct: 408 LELPHHCPSCGSDLVRESGE------AATRCVNS-SCPAILSGALRHWVSKGALDVDGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++   +       +R  AD++ L     TS      +   G+ S +NL  ++ + R+
Sbjct: 461 SKLIEQLVER----GLVRSIADLYRLDTALLTS------LERMGEKSASNLVAALEQSRS 510

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R ++ LGI HVG   A++LA  +    + A               ++  +  +G  
Sbjct: 511 QPWSRQLYGLGIHHVGEVNAKALASAFPDADSLADA-------AVLQPEAITGLHGIGPE 563

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--------NVSSEIENKKLVFTGTLQ 659
           IAQ++ +++    N   ++ L           ++        N S ++  +  V TGTL 
Sbjct: 564 IAQSLQQWFSTSANQDLLQQLRDVGLTLAASDQERQTLADRSNGSGQLSGQTFVLTGTLP 623

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + R +AQ  +   G  VS  +S+KT  ++ GD  GSKLEKA+ LGV +++E   + L+Q
Sbjct: 624 SLSRSQAQALIEAAGGKVSGSVSKKTSFVVAGDEAGSKLEKAKSLGVSVLDEAALMLLIQ 683

Query: 720 QYNTTLRI 727
               ++  
Sbjct: 684 DSADSIHP 691


>gi|51473890|ref|YP_067647.1| NAD-dependent DNA ligase LigA [Rickettsia typhi str. Wilmington]
 gi|81389976|sp|Q68W27|DNLJ_RICTY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|51460202|gb|AAU04165.1| DNA joinase [Rickettsia typhi str. Wilmington]
          Length = 693

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 269/712 (37%), Positives = 422/712 (59%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S ++A+K L  L  +I+ ++  YY    P++ DSEYD L      + + FP L  S
Sbjct: 4   IDLISEKEAKKLLEELADKIAMYNHAYYIEDNPLVSDSEYDQLFNLNLKLENTFPHLVLS 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  KIG ++     KV H  P LSL   ++ ED+R F+ RI  F +  +   I  
Sbjct: 64  ---NSPSKKIGAKITNKFAKVIHQAPMLSLSNAFDEEDIRDFLERIKNFLRINEFTPI-- 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G F+  A RGDG+ GED++  I+ I   P     N PE +EVR
Sbjct: 119 FCEPKIDGLSFSAIYKHGLFITGATRGDGYVGEDITINIKTIKNFPH-KIDNAPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DF+ LN E  A  R  +ANPRNAA+G +R+L+      R L +F++  G T 
Sbjct: 178 GEIYIEKQDFVNLNKEQEAQNRGKFANPRNAAAGSIRQLDVAITAQRPLKYFIYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++ L F VN   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 KNLASTQEQLLAKLKALSFSVNEISKLASSEEEIFAFYEYLKTNRHNLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            F++Q ++G  ARSPR+ I+HKF      T+LL I +Q+GRTG+LTPVA L+P+ IGG +
Sbjct: 298 NFAMQNRMGFIARSPRFAIAHKFPAIIGQTKLLSITVQVGRTGMLTPVAELDPLEIGGVV 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIP++  + +++R  D   
Sbjct: 358 VSRATLHNFQDIAR-----------KDVRIKDYVFLQRAGDVIPQITGVDISKRSNDTVK 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FCP C S++               RC  GL C AQ  ER+ HFVS++A +I GLG
Sbjct: 407 FDTPVFCPSCNSKLRY------VSEDIIIRCDNGLNCPAQNYERICHFVSKNAMDIAGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q+ F          I  P DIF L+++ +T+  ++EN+ G+G  SV NL+ +I K + 
Sbjct: 461 RKQVAFLIDKR----LISNPLDIFFLKKKNETNLIRLENMDGWGKKSVANLWQNIEKSQK 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           ISL+RFI++LGIRH+G + A+ LA+ ++SY NF  ++  +  +++D +  L  +  +GD 
Sbjct: 517 ISLQRFIYALGIRHIGEQNAKLLAREFVSYNNFIAQMELLSKNDSDVYQKLNDLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +   I++F+    NI  ++ L   ++    +  +  +  +  K LVFTG+L+ I R +A+
Sbjct: 577 MLVDIIDFFYVKENIQLIKKLGAVLNIEDYKETREQN-ILTGKILVFTGSLKTISRVEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E   +LGA V++ +S  TD++IVG N GSKL+KA++L +KI++E ++L  ++
Sbjct: 636 EIAEKLGAKVASSVSSNTDLLIVGVNGGSKLKKAKELNIKIIDEAEWLAFIK 687


>gi|224539983|ref|ZP_03680522.1| hypothetical protein BACCELL_04895 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518409|gb|EEF87514.1| hypothetical protein BACCELL_04895 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 694

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 228/713 (31%), Positives = 366/713 (51%), Gaps = 53/713 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A++   A++++  L  E+  H+  YY  + P I D E+D + R    +    P+    +D
Sbjct: 29  AMT---AKEKIDQLRAELHRHNYNYYVLNAPEISDKEFDDMMRELQDMEREHPEY---QD 82

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
              P  ++G ++N +  +VTH  P LSL   ++  ++  F  R  +      +       
Sbjct: 83  ETSPTMRVGSDLNKNFTQVTHKYPMLSLGNTYSEGEVSDFYDRTQKAL----NEDFEICA 138

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K DGT I++ YE GK + A  RGDG  G+DV+  ++ I TIP VL  + P++ E+RGE
Sbjct: 139 ELKYDGTSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGDYPQLFEIRGE 198

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           + +    F  LN E  A     +ANPRNAASG L+  N   +               E+ 
Sbjct: 199 ILMPWEVFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGEELP 258

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             G YE LQK    GF +++ +++ ++   +  Y +   + R  LP   DG+V KV+   
Sbjct: 259 CDGHYENLQKAAQWGFKISDHMKKCHSLQEVFDYIHYWDTERKNLPVATDGIVLKVNSLK 318

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            QK LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  
Sbjct: 319 QQKNLGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKR 378

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFS 429
           A+LHN D I+GL           D+ VGD V V++ GE+IPK+  +  + R     +   
Sbjct: 379 ASLHNADIIEGL-----------DLHVGDMVYVEKGGEIIPKITGVDKDARSMMVGEKVK 427

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           F + CP C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG +
Sbjct: 428 FITHCPECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPE 481

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D F++       I+  AD++ L      +      +   GD S  N+   I + + + 
Sbjct: 482 TVDMFYR----LGLIKDTADLYKLTVDDIKN------LDRMGDKSAENIVKGIAQSKEVP 531

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ER +F+LGIR VG  +A+ +AK +   +               D   LI +  +G+ IA
Sbjct: 532 FERALFALGIRFVGETVAKKIAKSFTDIEELENA----------DLERLINIDEIGEKIA 581

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666
           Q+I+ ++ NP N   +E L K       R E+++S    ++  + +V +G      R + 
Sbjct: 582 QSIISYFANPLNRELIERL-KIAGLQFSRKEEDLSGYTDKLAGQSIVISGVFTHHSRDEY 640

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           ++ + + G      +S KT  I+ G+N G +KLEKAQ+LGV+IM+E++FL L+
Sbjct: 641 KDLIEKNGGKNVGSISAKTSFILAGENMGPAKLEKAQKLGVQIMSEDEFLALI 693


>gi|291513768|emb|CBK62978.1| DNA ligase, NAD-dependent [Alistipes shahii WAL 8301]
          Length = 674

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 217/705 (30%), Positives = 366/705 (51%), Gaps = 48/705 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            R+ +  L +++  H+  YY  + P I D E+DA+ R    +  A P+ A   DPN P  
Sbjct: 2   VRERIEELRRQLELHNFKYYVENAPEISDFEFDAMMRELQDLERAHPEYA---DPNSPSV 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++      V H    LSL   +++++L +FI RI R     D     +  E K DG
Sbjct: 59  RVGSDLTAEFRTVKHRYAMLSLGNTYSLDELHEFIGRIEREAGATD-----YVCELKFDG 113

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195
           T I++ YE G+ V A  RGDG  G+DV+A +R + T+P  L   + P++ E+RGE+ +  
Sbjct: 114 TAISLTYEHGRLVRAVTRGDGVEGDDVTANVRTVRTVPLRLRGTDWPDLFEIRGEILMPY 173

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
             F  LN E  A G + +ANPRNAA+G L++ +   + R             E+     +
Sbjct: 174 ASFDRLNAEREANGEQLFANPRNAAAGTLKQQSSAVVARRGLDCTLYQLAGDELPFTSHW 233

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+K R  GF V++  R   +   I ++     + R  LP+  DG+V KV++F++++QL
Sbjct: 234 ESLEKARQWGFKVSDAARICRSVAEIDAFIEHWDTARRRLPFPTDGVVIKVNDFAVRRQL 293

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A++P+W +++KF  ++A+TRL  +  Q+GRTG +TPVA LEPV + G  +  ATLHN
Sbjct: 294 GFTAKAPKWAVAYKFKAERAATRLDSVSFQVGRTGAITPVANLEPVLLAGTTVRRATLHN 353

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            + +  L           DIR GD V V++ GE+IPK++ + + +R  D++PF + + CP
Sbjct: 354 AEQMAQL-----------DIRPGDTVYVEKGGEIIPKIIGVDLAQRPADSRPFEYITVCP 402

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +VR          A H C     C  Q + R+ HF+ R A +IEGLG++ ++  +
Sbjct: 403 ECGTPLVRYEGE------AKHYCPNQSGCRPQIIGRIIHFIRRKALDIEGLGEETVELLY 456

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           ++      +R  AD++ L+  Q      +  +   G+ S  N+  S+ + + +  +R +F
Sbjct: 457 EN----GLVRDVADLYDLRAEQ------LAPLPRLGEKSADNIIRSVERSKAVPFQRVLF 506

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIR VG   A+ LA+++ S     +               L+    VG  IA AI+E+
Sbjct: 507 GLGIRFVGETTAKYLAEHFRSLDAVMRATR----------EELVEADEVGGRIADAIIEY 556

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +    N+  +  L            +  S  +  +  V +G   +  R + +E +   G 
Sbjct: 557 FAEEDNLRIIRRLRAAGLQFEAEARRLASEALAGRSFVVSGKFTR-SRDEMKELIELHGG 615

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
              A +S   D ++ GD  G +KL+KA++LGV+I++EE+F+ +++
Sbjct: 616 RNLAAVSGSVDYLVAGDKMGPAKLKKAEKLGVRIISEEEFIAMIE 660


>gi|309777086|ref|ZP_07672052.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915156|gb|EFP60930.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 3_1_53]
          Length = 665

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 234/700 (33%), Positives = 362/700 (51%), Gaps = 47/700 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L + +      YY   +P + D EYD   +   A+   +P      DPN    +
Sbjct: 3   QQRILELRKILDRLAYEYYVLDQPSMSDQEYDRYYQELVALEEKYPQY---RDPNSITQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  +  KV H    LSL   +N++DL  F  R+     +            KIDG 
Sbjct: 60  VGGVVLDAFTKVEHKRTMLSLGNAFNLDDLHAFDERVREVVPRVRYVVE-----LKIDGL 114

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++ Y  G+FV A  RGDG  GEDVS  ++ I +IP    + +   +EVRGEVY+    
Sbjct: 115 AMSLIYRDGRFVQALTRGDGVVGEDVSHNVKTIASIPMN--IPLQGEVEVRGEVYMPNAS 172

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E    G + +ANPRNAA+G +R+L+ +    R L+ F +      E       E
Sbjct: 173 FDMLNAEREKNGEELFANPRNAAAGSIRQLDSSIAAKRKLDAFWYYFVNAQEYDIHSHEE 232

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+KM  +   VN   +  ++   + ++  E+   R+TLPY IDG+V KVD+   Q +LG
Sbjct: 233 ALEKMSEMHLRVNPLRKVCDSIAEVWAFIEEITKQRNTLPYAIDGMVIKVDDLDAQNRLG 292

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + PRW I++KF  ++  T+LLDI + +GRTG +TP A LEPV + G  ++ A LHNE
Sbjct: 293 STVKVPRWAIAYKFPAEEVVTKLLDIVVTVGRTGRITPNAVLEPVRVAGTTVSAAQLHNE 352

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D IK            +DIR+ D V+V++AG++IP+VV  +V  R+     + FP+ CPI
Sbjct: 353 DMIK-----------EKDIRIQDDVVVRKAGDIIPEVVRPLVERRNDTQAVYHFPTHCPI 401

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +VR          AAH C     C A+ +E + HF SRDA +I+ LG ++++FF K
Sbjct: 402 CGSELVRFPEE------AAHYCIN-QDCPARVVESMIHFASRDAMDIDTLGDKKIEFFHK 454

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +    DI+ L+  +Q    ++ ++ GF + SV  L D+I   +   LE  ++ 
Sbjct: 455 Q----GFLNTIEDIYCLKEHKQ----ELIDLEGFKEKSVAKLLDAIEDSKKNPLEDLVYG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG + A+ LAK +L+                     L+ +  +G I A++I  F+
Sbjct: 507 LGIRQVGKKAAKVLAKQFLTMDALMAA----------SVEELVAIKDIGQITAESITAFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
             P+N+  +  L           E+   S+   K +V TGTL ++ R+ A+  +  LGA 
Sbjct: 557 HEPKNMELIAHLKGYGLRMDTEAEQIQESQFSGKTVVLTGTLTQMTRNDAKALLESLGAN 616

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           VS  +S+KTD++I G+  GSKL KA  LGV  M+E+ F+ 
Sbjct: 617 VSGSVSKKTDLVIYGEAAGSKLTKANSLGVMTMDEDTFMK 656


>gi|220912112|ref|YP_002487421.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6]
 gi|254778146|sp|B8HFJ3|DNLJ1_ARTCA RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|219858990|gb|ACL39332.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6]
          Length = 770

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 216/742 (29%), Positives = 359/742 (48%), Gaps = 61/742 (8%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E++  +  R+E  +L   I  +   YYQ   P++ D+E+D L RR + I    P+L  + 
Sbjct: 22  ESIPSDAIREEYENLSDLIRKYRFAYYQDDAPLVSDAEFDTLFRRLEEIEALHPELVAN- 80

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIF 127
             + P  ++GGE + +   V H     SLE +++IE+L  ++ R      K  D      
Sbjct: 81  --DSPTQEVGGEASAAFAAVEHLQRMYSLEDVFSIEELEAWLNRAEASIAKLGDGTAQAA 138

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           +  E KIDG  + + Y  GK V AA RGDG +GED++  +  I  IP+ LS    P  +E
Sbjct: 139 WLTELKIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHNVLTIKEIPQQLSGEGYPSEVE 198

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245
           VRGEV+I    F   N+ +I  G+ P ANPRNAA+G LR+ +P +   R L  FVHG+G 
Sbjct: 199 VRGEVFIPSKAFAEFNEALIEAGKAPLANPRNAAAGSLRQKDPAETAKRPLKMFVHGIGA 258

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
              + A+ Q E    ++  G PV+           ++ + ++    R  L ++IDG+V K
Sbjct: 259 REGLEARSQSETYALLKEWGLPVSPYFEVLEARADVLGFISKYGEQRHKLLHEIDGIVIK 318

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+F+ Q+ LG   R PRW +++K+  ++  T+LLDI + +GRTG +TP   +EPV + G
Sbjct: 319 VDDFATQRALGYTTRVPRWAVAYKYPPEEVHTKLLDIQVNVGRTGRVTPFGMMEPVKVAG 378

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH--- 422
           + +  ATLHN+D +K            + +++GD V++++AG+VIP++V  ++  R    
Sbjct: 379 STVEMATLHNQDVVK-----------AKGVKIGDIVVLRKAGDVIPEIVGPVLALRDQQD 427

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P  + F  P+ CP C + +         +     RC  G +C +Q  ER+ H   R  F+
Sbjct: 428 PPVRDFVMPTECPACGTPLA-----PAKEGDVDIRCPNGKSCPSQLRERVFHLAGRGGFD 482

Query: 483 IEGLGKQQLDFFFKSEDPA-FSIRIPADIFTLQRRQ------------------------ 517
           IE LG +      +  +P    +   A +F L R                          
Sbjct: 483 IEALGWEAAIALTQPAEPDVPPLTSEAALFDLTREDLADVKIRREKRSKGVATGEYELVP 542

Query: 518 QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
              +            S   L+  ++K ++  L R + +L IRHVG   +R+LA+ + + 
Sbjct: 543 YFYSKGTAKSPSKPTASTEKLFKELDKAKSQPLWRVLVALSIRHVGPRASRALAQAFGTM 602

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
                               L  V  VG  IA A+ E++    +   V+           
Sbjct: 603 DGIRAASE----------EELAHVDGVGPTIAAALKEWFAEDWHREIVDRWAAAGVRMED 652

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697
             +++    +E   +V TG+L    R +A+E +   G   S  +S+ T  ++ G++ G+K
Sbjct: 653 ERDESTPRTLEGLTVVVTGSLPNFSRDEAKEAILVRGGKASGSVSKNTSYVVAGESAGTK 712

Query: 698 LEKAQQLGVKIMNEEQFLFLLQ 719
           L+KA+QLG+++++E+ F  LL 
Sbjct: 713 LDKAEQLGIRVLDEDGFRLLLD 734


>gi|327402054|ref|YP_004342892.1| DNA ligase [Fluviicola taffensis DSM 16823]
 gi|327317562|gb|AEA42054.1| DNA ligase [Fluviicola taffensis DSM 16823]
          Length = 670

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 222/712 (31%), Positives = 353/712 (49%), Gaps = 49/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++ +A+ ++  L +E++ H+  YY  S P I D E+D L +    +   FP+LA     
Sbjct: 1   MNLSEAQLKIEQLTKELTLHNHNYYVESNPTISDYEFDVLLKELQDLETQFPELASDL-- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++GG++      V H  P LSL   ++ E++ ++  R+ +         I +  E
Sbjct: 59  -SPTKRVGGDITKKFATVVHKFPMLSLSNSYSEEEIIEWEQRLKKL----ATGPIEYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I IRY  GKF  A  RGDG  GED+SA ++ I TIP  L  + P+  E+RGE+
Sbjct: 114 LKYDGVAIGIRYVNGKFARAVTRGDGTKGEDISANVKTIRTIPLTLKGDYPDDFEIRGEI 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           +  K +F A+N +   +G   +ANPRN+ASG L+  +   +               ++  
Sbjct: 174 FFPKANFEAMNRQREELGEPVFANPRNSASGTLKSQDSKVVAERGLDCFLYGVYGDDLLM 233

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQA----NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +   E +QK +  GF       +      +  GI+ + +     R  LP++IDG+V KV+
Sbjct: 234 ESHLESIQKAQEWGFKTPQEKNKYILNTFSIEGIMEFIHYWDKERYNLPFEIDGIVIKVN 293

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            +  Q  LG  A+SPRW I++KF  ++ ST L ++  Q+GRTG +TPVA L PV +GG +
Sbjct: 294 NYDQQADLGFTAKSPRWAIAYKFKAERVSTTLKEVTYQVGRTGAITPVANLIPVLLGGTV 353

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN D I+ L           D+ + D V V++ GE+IPK+V +  + R  +A+ 
Sbjct: 354 VKRASLHNADQIEKL-----------DLYLEDSVYVEKGGEIIPKIVGVQTDSRPVNAEK 402

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             F   CP C S + R            H C   L C  Q   R++HF+SR A NI+GLG
Sbjct: 403 VIFIERCPECNSELQRREGE------VQHYCLNDLVCPPQVKGRMEHFISRKAMNIDGLG 456

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +D  +K           AD++ L   Q  +      +    D S  NL   I   + 
Sbjct: 457 AETIDLLYKE----GLADSIADLYDLTFDQVVN------LERMADKSANNLIIGIRNSKE 506

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           I  ER +F+LGIR VG  +A+ LA  + +    ++            +  LI V  +G+ 
Sbjct: 507 IPFERVLFALGIRFVGETVAKKLAYAFNNIDAISKAT----------YDELIAVDEIGEK 556

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IA A+ +F+Q+ R I  +E L               S+ +E K  V +G   K  R + +
Sbjct: 557 IAIAVQKFFQDERAIQIIERLKIAGVQFEVEEVALDSNSLEGKSFVVSGVFSKFSRDEIK 616

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + + + G      +S KT  ++ G+N G +KLEKA  LG+ I++EE F+ +L
Sbjct: 617 DLIEKNGGKNVGSISAKTTYVLAGENMGPAKLEKASSLGIPIISEEDFIQML 668


>gi|325288193|ref|YP_004263983.1| DNA ligase [Cellulophaga lytica DSM 7489]
 gi|324323647|gb|ADY31112.1| DNA ligase [Cellulophaga lytica DSM 7489]
          Length = 664

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 217/706 (30%), Positives = 355/706 (50%), Gaps = 47/706 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++ +L +E+  H+  YY    P I D ++D   +   A+    P+     D N P 
Sbjct: 2   SVKEQIEALREELRKHNHNYYVLDTPTISDYDFDIKLKELQALEAKHPEF---YDANSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GGE+  +   V H     SL+  ++ EDL  +  R+ +      D++I FT E K D
Sbjct: 59  LRVGGEITKNFNTVVHEHRMYSLDNSYSKEDLLDWEKRVEKILG---DSNIEFTCELKYD 115

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I++ YE+GK V A  RGDG  G+DV+  I+ I ++P  L  + P   ++RGE+ +  
Sbjct: 116 GASISLTYEEGKLVRAVTRGDGFQGDDVTTNIKTIKSVPLQLKGDYPAKFDIRGEIVLPF 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
             F  +N+E IA G  PY NPRN ASG L+  + + + +     +      + +  + Q+
Sbjct: 176 EGFYKMNEERIANGEDPYMNPRNTASGSLKLQDSSLVAQRPLECLLYSVVGANLNLETQF 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+K R  GF V    +   +   ++++       R  LPY+ DG+V KV+    Q++L
Sbjct: 236 EALEKTRSWGFKVPTVAKLCKSVDEVMAFVEYWDVHRHELPYETDGVVVKVNTLRYQEEL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  ++SPRW +++KF  +Q ST L +I  Q+GRTG +TPVA L PV + G  +  A+LHN
Sbjct: 296 GYTSKSPRWAMAYKFKAEQVSTVLNEISYQVGRTGAITPVANLAPVLLAGTTVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+ L           D+RVGD V V++ GE+IPK+V + ++ R  +++P  +   CP
Sbjct: 356 ADQIEKL-----------DVRVGDAVFVEKGGEIIPKIVGVNLDLRPQNSEPTKYIDHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + ++R          A H C     C  Q   +++HF+SR A +I+GLG + ++  F
Sbjct: 405 ECNTELIRTEG------DAKHYCPNEYGCPPQITGKIQHFISRKAMDIDGLGSETVELLF 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           K       I+  AD++ L   Q      +  +      S  NL   +     I  ER +F
Sbjct: 459 KE----GLIQNYADLYALTVDQ------LLPLERMAKKSAENLVKGVAASVEIPFERVLF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ LAK Y +                   L L  V  +G+ IA ++V F
Sbjct: 509 ALGIRFVGETVAKKLAKAYKNIDALMYA----------SALELATVDEIGERIASSVVAF 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +QN  N+  +  L           EK  N + +++ +  V +G  + + R+  ++ +   
Sbjct: 559 FQNEINLDIINRLKGYGLQFQVSAEKLLNQTEKLKGETYVVSGVFE-MSRNDLKKLIEDN 617

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           G  V + +S KT  ++ GD  G SK  KA+ L V I++E++FL  L
Sbjct: 618 GGKVGSSISSKTTFLVAGDKMGPSKRTKAESLNVPIISEQEFLAKL 663


>gi|296451892|ref|ZP_06893609.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP08]
 gi|296879713|ref|ZP_06903688.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP07]
 gi|296259274|gb|EFH06152.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP08]
 gi|296429302|gb|EFH15174.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP07]
          Length = 677

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 222/711 (31%), Positives = 375/711 (52%), Gaps = 50/711 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +     + E++ L + I+YH++ YY    P I D EYD L +   ++    P+L R    
Sbjct: 1   MQKVSIKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRI--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P N++GG+      ++ H  P LSL   ++ +DLR F  R+  +  +    ++ + +E
Sbjct: 58  DSPTNRVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + + Y  G+F   A RGDG  GED+S  +  + +IP  L +N  + + VRGEV
Sbjct: 114 FKIDGLSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           YISK++F  +N++     +  +ANPRN A+G LR+L+P     R L+ FV  +    +  
Sbjct: 172 YISKDNFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEDYD 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L+ +  LGF V+   +   +   ++ +       R  L Y+IDG+V KV+   
Sbjct: 232 LESHSDSLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLEYEIDGMVIKVNNIK 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            + ++G  A+SPRW I++KF  ++  T+++DI +++GRTG +TP A LEPV + G  ++ 
Sbjct: 292 QRDEMGYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYI+            +DI++ D VLV++AG++IP+V+++I  ER  D   F  
Sbjct: 352 ATLHNEDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C    +R          AA +C    +C AQ    + HFVSRDA NI+GLG+  
Sbjct: 401 PEKCPVCSEPTIRLEGE------AAVKCINM-SCPAQIRRGIIHFVSRDAMNIDGLGESI 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +      +     I+  +D++ +++           +   G+ S  NL +SI K +   L
Sbjct: 454 ITLLLNEK----IIQDVSDLYYIKKEDVV------ELERMGEKSADNLINSIEKSKENDL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R I  LGI+ +G + A+ LA  +    +     +            L  +   G I+A 
Sbjct: 504 WRLINGLGIKFIGVKAAKILAYNFKDLDDVMSATS----------EQLEELEEFGSIMAN 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           ++VEF++  +N+  +  L        S+    + V    E  K+V TGTL  ++R+ A++
Sbjct: 554 SVVEFFKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKD 613

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + + G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL LL+
Sbjct: 614 MIEKRGGKATSSVSKSTTFVLAGEEAGSKLAKANDLGIKVIDEERFLELLK 664


>gi|15604557|ref|NP_221075.1| NAD-dependent DNA ligase LigA [Rickettsia prowazekii str. Madrid E]
 gi|6225281|sp|Q9ZCK9|DNLJ_RICPR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|3861252|emb|CAA15151.1| DNA LIGASE (lig) [Rickettsia prowazekii]
 gi|292572364|gb|ADE30279.1| DNA ligase, NAD-dependent [Rickettsia prowazekii Rp22]
          Length = 689

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 270/712 (37%), Positives = 417/712 (58%), Gaps = 29/712 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           I+ +S ++A+K L  L  +I+ ++  YY    P++ DSEYD L      + + FP L  S
Sbjct: 4   IDLISEQEAKKLLKELADKIAMYNHAYYIEDNPLVSDSEYDQLFNINLKLENTFPHLVLS 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N P  K+G  +     KV H  P LSL   ++ +DLR F+ RI  F +  +   I  
Sbjct: 64  ---NSPSKKVGANITNKFAKVIHQAPMLSLSNAFDEDDLRDFLERIKNFLRINEFTPI-- 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG   +  Y+ G F+  A RGDG+ GED++  I+ I   P     N PE +EVR
Sbjct: 119 FCEPKIDGVSFSAIYKNGLFITGATRGDGYVGEDITMNIKTIKNFPH-KIDNAPEFLEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE+YI K DFL LN E  A  R  +ANPRNAA+G +R+L+      R L +F++  G T 
Sbjct: 178 GEIYIEKQDFLNLNKEQEAQNRGKFANPRNAAAGSIRQLDVAITAQRPLKYFIYSGGVTE 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +  A  Q ++L K++ L F VN   + A++   I ++Y  +K+ R  LPY+IDG+VYK++
Sbjct: 238 QNLASTQEQLLTKLKALSFSVNEISKLASSEEEIFAFYEYLKTNRHNLPYEIDGVVYKLN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            F++Q ++G  ARSPR+ I+HKF      T+LL I +Q+GRTG+LTPVA L+P+ IGG +
Sbjct: 298 NFAMQNRMGFIARSPRFAIAHKFPAIIGQTKLLSITVQVGRTGMLTPVAELDPIEIGGVV 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN   I             +D+R+ D V ++RAG+VIP++  + +++R  D   
Sbjct: 358 VSRATLHNFQDIAR-----------KDVRIKDYVFLQRAGDVIPQITGVDISKRSNDTVK 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P FCP C S++               RC  GL C AQ  ER+ HFVS++A +IEGLG
Sbjct: 407 FDTPVFCPSCNSKLRY------VSEDIIIRCDNGLNCPAQNYERICHFVSKNAMDIEGLG 460

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++Q+ F          I  P DIF L+ + +T+  ++EN+ G+G  SV NL+ +I K + 
Sbjct: 461 RKQVAFLIDKR----LISNPLDIFFLKEKNETNLIRLENMDGWGKKSVANLFKNIEKSQK 516

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           ISL+RFI++LGIRH+G + A+ LA+ + SY NF  ++  +  +++D +  L  +  +GD 
Sbjct: 517 ISLQRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLSKNDSDIYQKLNDLEGIGDK 576

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           I   IV+F+    N   ++ L   ++    +  +  +  +  K +VFTG+L  I R +A+
Sbjct: 577 ILVDIVDFFYVKENTQLIKRLGSVLNIEDYQETREQN-ILTGKIVVFTGSLSTISRVEAK 635

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E   +LGA V+A +S  TD++I G N GSKL+KA++L +KI++E ++L  ++
Sbjct: 636 EIAEKLGAKVTASVSLNTDLVIAGVNGGSKLKKAKELNIKIIDEVEWLAFIK 687


>gi|119961355|ref|YP_947208.1| DNA ligase, NAD-dependent [Arthrobacter aurescens TC1]
 gi|166215391|sp|A1R4P6|DNLJ_ARTAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119948214|gb|ABM07125.1| DNA ligase, NAD-dependent [Arthrobacter aurescens TC1]
          Length = 768

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 223/753 (29%), Positives = 364/753 (48%), Gaps = 65/753 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  R E   L   +  +   YYQ   P + D+E+D L RR + +    P+L      + P
Sbjct: 31  ESLRDEYEQLADLVRKYRYAYYQEDSPTVSDAEFDELYRRLEELEALHPELV---SNDSP 87

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFTLEP 132
             ++GGE++ +   V H     SL+ ++++++L  ++ +      K  D    I +  E 
Sbjct: 88  TQEVGGEVSSAFAAVEHLQRMYSLDDVFSLDELEAWVRKAEASVAKLGDSVPPIAWLTEL 147

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEV 191
           KIDG  + + Y  GK V AA RGDG +GED++  +  I  IPR LS +  P  +E+RGEV
Sbjct: 148 KIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHNVLTIKEIPRQLSGSGYPSEVEIRGEV 207

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           +I    FL  N+ ++A G+ P ANPRNAA+G LR+ +P +   R L+ FVHG+G    + 
Sbjct: 208 FIPSKAFLEFNESLVAAGKAPLANPRNAAAGSLRQKDPAETAKRPLSMFVHGIGAREGLD 267

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q E  + +   G PV+  ++   TF  ++ +  +    R  L ++IDG+V K+D+F+
Sbjct: 268 AKSQSESYKLLEEWGLPVSPYLKVLETFDDVLKFIADYGERRHKLVHEIDGIVVKIDDFA 327

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  +R PRW  ++K+  ++  T+LLDI + +GRTG +TP   +EPV + G+ +  
Sbjct: 328 TQRALGYTSRVPRWAAAYKYPPEEVHTKLLDIAVNVGRTGRVTPFGLMEPVKVAGSTVGM 387

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP--- 427
           ATLHN+D +K            + + +GD V++++AG+VIP++V  ++  R     P   
Sbjct: 388 ATLHNQDVVK-----------AKGVMIGDIVILRKAGDVIPEIVGPVLALRDKQEPPVRE 436

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P+ CP C + +         +     RC    +C +Q  ER+ H  SR AF+IE LG
Sbjct: 437 FVMPTECPSCGTPLA-----PAKESDVDIRCPNAKSCPSQLRERVFHVASRGAFDIEALG 491

Query: 488 KQQLDFFFKSEDP-AFSIRIPADIFTLQRRQ------------------------QTSTT 522
            +      +  +P    +   A +F+L R                             T 
Sbjct: 492 WEAAVALTQPAEPETPPLTSEARLFSLTREDLADVLIRREKRSKGVGTGEYELVPYFYTK 551

Query: 523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582
                      +   L+  + K +   L R + +L IRHVG   +R+LA  + S      
Sbjct: 552 GTAKSPSKPTATTEKLFAELEKAKQQPLWRVLVALSIRHVGPTASRALATAFGSMDAIRN 611

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
                +AH          V  VG  IA A+ E++    +   V++            + +
Sbjct: 612 ATEEQMAH----------VDGVGPTIAVALKEWFAVDWHNEIVDSWAAAGVRMEDERDAS 661

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
           V   +E   +V TGTL    R +A+E +   G   S  +S+ T  ++ G++ G+KL+KA+
Sbjct: 662 VPRTLEGLTVVVTGTLPNFSRDEAKEAIIIRGGKASGSVSKNTSYLVAGESAGTKLDKAE 721

Query: 703 QLGVKIMNEEQFLFLL----QQYNTTLRIHDDD 731
           QLGV +++E+ F  LL     Q  T      D+
Sbjct: 722 QLGVPVLDEDGFRELLANGPAQTGTEAEAATDE 754


>gi|282889962|ref|ZP_06298497.1| hypothetical protein pah_c008o052 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500155|gb|EFB42439.1| hypothetical protein pah_c008o052 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 668

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 228/711 (32%), Positives = 382/711 (53%), Gaps = 46/711 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++   + +    L  +I  H+  YY   +P+I D E+D L  + + +    P+   S   
Sbjct: 1   MTKPSSHQSYQELCNQIWSHNKAYYVDHRPVISDEEFDHLMHQLEQMEKEHPEWISSA-- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++G  +      V H  P LSL   ++ ++++ FI R+ +  + +D   + F+ E
Sbjct: 59  -SPTQRVGEMLTEGFQTVAHRTPMLSLANSYSKDEVQDFIHRVKKLTRSQD---VAFSCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190
            K+DG  I+ ++EKG FV    RGDG  G+D++  +R +   P  L     P+ +EVRGE
Sbjct: 115 LKMDGIAISAQFEKGIFVRGITRGDGKKGDDITQNLRTVAAFPLQLIGPSAPDFLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEI 249
           +++ K  F  LN E    G   +ANPRNAA+G L+ L+P +   R L+   +G+G+ S+ 
Sbjct: 175 IFMPKQVFQKLNAEKELEGEDLWANPRNAAAGSLKLLDPNETRRRKLDVVFYGIGQDSQD 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q+     ++  G P+ + V + +T   I  +  +++++R++LP++IDG+V K+D  
Sbjct: 235 ALTSQFACHALLKSYGLPILHQVEKCHTLEEIWEFVEKVRTLRASLPFEIDGVVVKLDSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + QK+LG   ++PRW +++KFA +QA T +  I +Q+GRTG+LTPVA L+PV + G+ I 
Sbjct: 295 AEQKRLGSTGKNPRWAVAYKFAAEQAETDIYSITVQVGRTGVLTPVAELKPVFLAGSTIA 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNE+ +             +DIR GD V++++ G+VIPKVV +  ++R  D+ P+ 
Sbjct: 355 RATLHNEEEV-----------LRKDIREGDSVIIEKGGDVIPKVVSVNFDKRKSDSHPWK 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + V R ++        A +C   L C  QQL RL +F  + A +IE +G++
Sbjct: 404 MPTHCPSCGALVARSVDE------VAVKCPNTLHCPEQQLRRLIYFAGKFAMDIEHMGEK 457

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   +       ++ P+DI+ L   Q         + GF   SV NL  SI K +++S
Sbjct: 458 VVEQLVR----LGFVKRPSDIYALTSEQLF------QLEGFKTKSVENLITSIEKSKDVS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RFI +LGI+HVG   A  LAK   +     Q               L+++  +G+ +A
Sbjct: 508 FSRFIMALGIKHVGEGTAELLAKRAGNVHILMQ----------MTTEELLQIEGIGEKVA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQE 668
            AIVE++ + RN   ++ LL+           +      + K  V TGTL++  R  A  
Sbjct: 558 TAIVEYFADARNQEEIQLLLQRGVLPQEVKSISHKGHPFDAKTFVLTGTLKQYTRPAAAT 617

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + + G  V+  +S KTD ++ G++PGSKL+KA+ L V+I+ EE+F  +L 
Sbjct: 618 LIKERGGKVTNSVSSKTDYLLAGEDPGSKLDKAKSLQVRILTEEEFQAMLD 668


>gi|149372321|ref|ZP_01891509.1| putative DNA ligase [unidentified eubacterium SCB49]
 gi|149354711|gb|EDM43274.1| putative DNA ligase [unidentified eubacterium SCB49]
          Length = 677

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 219/719 (30%), Positives = 359/719 (49%), Gaps = 59/719 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
             +++  L +E+  ++  YY      + D E+D   +    +  A P+     D N P  
Sbjct: 3   IEQQIKELREELRAYNYQYYVLDNATVSDFEFDQKLKELQQLEDAHPEYF---DANSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GGE+  +   V H+    SL+  ++ EDL  + TR+ +      D  + +  E K DG
Sbjct: 60  RVGGEITKNFETVKHNFRMYSLDNSYSKEDLEDWETRVKKMV----DGDVNYACELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +++ YEKG  V A  RGDG  G++V+A ++ I ++P  L  + PE+ E+RGE+ +  +
Sbjct: 116 ASMSLTYEKGVLVRAVTRGDGFQGDNVTANVKTIKSVPLQLKGDYPELFEIRGEIVLPFD 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F A+N+E IA G +PY NPRN ASG L+  +  ++ +     +      +++    Q E
Sbjct: 176 GFNAMNEERIAAGEEPYRNPRNTASGSLKLQDSAEVAKRPLDCLLYSLVANKLPVATQME 235

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K    GF V    + A++   ++ + N     R  LPY+ DG+V KV+    Q++LG
Sbjct: 236 GLKKASDWGFKVPPVAKLASSIEEVLEFVNYWDKHRHELPYETDGVVVKVNSLQQQEELG 295

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++SPRW +++KF  +Q ST L +I  Q+GRTG +TPVA L+PV + G  +  A+LHN 
Sbjct: 296 YTSKSPRWAMAYKFKAEQVSTVLEEITYQVGRTGAITPVANLQPVELAGTTVKRASLHNA 355

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DIR  D V V++ GE+IPK++ + + ER  D+QP  + S CP 
Sbjct: 356 DQIEKL-----------DIRERDTVYVEKGGEIIPKIIGVNLEERPEDSQPTKYISQCPD 404

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + +VR          A H C     CS Q + R++HF+SR A +IEGLG + +     
Sbjct: 405 CHTALVRTEG------DAKHYCPNEEGCSTQIIGRIQHFISRKAMDIEGLGGETVALLVN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD++ L          I  +      S  NL + ++K + I  ER +F+
Sbjct: 459 E----GVIKNYADLYALTVED------ILPLERMAQKSAENLVEGVSKSKEIPFERVLFA 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG  +A+ LAK++ S     +            +  LI V  +GD IA++++ F+
Sbjct: 509 LGIRFVGETVAKKLAKHFKSIDALMEA----------SFEQLIAVDEIGDRIAESVLAFF 558

Query: 617 QN------------PRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQ 662
           +               +   VE L           E+       +     V +G   K+ 
Sbjct: 559 KIETQDLFSEIKQGETHREVVERLRAYGVQLAISEEELAGQTDTLAGSTFVVSGVFAKVS 618

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R + ++ +   G  VS  +S+KT  ++ GD  G SK  KA++LGV I+ E+ FL ++ +
Sbjct: 619 RTELKKLIEDNGGKVSGSISKKTSYVVAGDKMGPSKRTKAEELGVVIITEDDFLAMIAK 677


>gi|163789388|ref|ZP_02183827.1| DNA ligase, NAD-dependent [Carnobacterium sp. AT7]
 gi|159875242|gb|EDP69307.1| DNA ligase, NAD-dependent [Carnobacterium sp. AT7]
          Length = 673

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 240/720 (33%), Positives = 369/720 (51%), Gaps = 53/720 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +     E A++ +  L   +  +   YY    P I D++YD L     A+   FPDL   
Sbjct: 1   MSTQDFESAKQRVFDLRTLLDKYSYEYYVKDTPSIPDADYDKLYHELVALEEEFPDLI-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P  ++GG +     KV H +P LSL   +N  DL  F  RI +      D    +
Sbjct: 59  -SNDSPTQRVGGTILPGFEKVVHEVPMLSLGNAFNEGDLLDFDRRIKKL----TDKPFSY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E KIDG  ++++YEKGK V AA RGDG  GE+V+  IR + ++P  L       IEVR
Sbjct: 114 ICELKIDGLAVSLKYEKGKLVRAATRGDGTVGENVTQNIRTVKSVPLRLKNAYS--IEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247
           GE Y+ K+ F+ LN +    G   +ANPRNAA+G LR L+  +   R LN F++ +G   
Sbjct: 172 GECYMPKDSFIKLNQDREENGEAIFANPRNAAAGGLRNLDTKETAKRNLNTFLYTVGDFG 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           E+ A  Q + L ++  LG   N   R   T   + +Y  E +  R+ LPY+IDG+V KV+
Sbjct: 232 ELTAISQEDALHQLDELGLRTNQDRRVFQTIEEVWAYTQEFQEKRTALPYEIDGIVIKVN 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           EF +QK++G   ++PRW I++KF  ++A T + DI+  +GRTG++TP A ++PV + G  
Sbjct: 292 EFDVQKEVGFTVKAPRWAIAYKFPAEEAHTVIRDIEWSVGRTGVVTPTAIMDPVQLAGTT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHNED I             RDIR+ D V+V +AG++IP+V  ++++ER  ++QP
Sbjct: 352 VQRASLHNEDLIH-----------ERDIRLLDTVVVHKAGDIIPEVTRVVLDERPEESQP 400

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C S ++            A RC     C AQ  E L HFVSR+A NI+GLG
Sbjct: 401 YLIPTHCPACDSELIHLEEE------VALRCMNPK-CPAQITEGLSHFVSRNAMNIDGLG 453

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + L   F+ E     +   AD++TL   Q  +      +    + S  NL  +I+  R+
Sbjct: 454 IKVLLQMFEKE----MVHDVADLYTLTFNQLVT------LDKIKEKSANNLLTAIDASRS 503

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SLER +F LGIRHVGA+ A+ +A+ + + +   Q     I         +         
Sbjct: 504 NSLERLLFGLGIRHVGAKAAKLIAERFETIEAVQQAEKEAIIAIEGIGEIIA-------- 555

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPS-----IGRHEKNVSSEIENKKLVFTGTLQKIQ 662
              ++V ++  P     ++ L                   V S    K +V TG L    
Sbjct: 556 --DSVVAYFSLPEVTELIQELKNSQVNMTYLGKKKEEVATVDSYFNGKTIVLTGKLTHFT 613

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R +A+E +  LG  V+  +S+KTD+++ G+  GSKL+KA+ L + + +E+Q L  L+   
Sbjct: 614 REEAKERIENLGGNVTGSVSKKTDLVVAGEEAGSKLDKAESLNILVWDEDQLLKALEGEE 673


>gi|126700928|ref|YP_001089825.1| DNA ligase [Clostridium difficile 630]
 gi|123362868|sp|Q180F3|DNLJ_CLOD6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 677

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 225/711 (31%), Positives = 374/711 (52%), Gaps = 50/711 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +     + E++ L + I+YH++ YY    P I D EYD L +   ++    P+L R    
Sbjct: 1   MQKVSVKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRI--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P N++GG+      ++ H  P LSL   ++ +DLR F  R+  +  +    ++ + +E
Sbjct: 58  DSPTNRVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + + Y  G+F   A RGDG  GED+S  +  + +IP  L +N  + + VRGEV
Sbjct: 114 FKIDGLSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           YISK++F  +N++     +  +ANPRN A+G LR+L+P     R L+ FV  +    E  
Sbjct: 172 YISKDNFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYD 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   E L+ +  LGF V+   +   +   ++ +       R  L Y+IDG+V KV+   
Sbjct: 232 LESHSESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIK 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            + ++G  A+SPRW I++KF  ++  T+++DI +++GRTG +TP A LEPV + G  ++ 
Sbjct: 292 QRDEMGYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYI+            +DI++ D VLV++AG++IP+V+++I  ER  D   F  
Sbjct: 352 ATLHNEDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C    +R          AA +C    +C AQ    + HFVSRDA NI+GLG+  
Sbjct: 401 PEKCPVCSEPTIRLEGE------AAVKCINM-SCPAQIRRGIIHFVSRDAMNIDGLGESI 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +      +     I+  +D++ +++           +   G+ S  NL +SI K +   L
Sbjct: 454 ITLLLNEK----IIQDVSDLYYIKKEDVVD------LERMGEKSADNLINSIEKSKENDL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R I  LGI+ +G + A+ LA  +          +            L  +   G I+A 
Sbjct: 504 WRLINGLGIKFIGVKAAKILAYNFKDLDEVISATS----------EQLEELEEFGSIMAN 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           ++VEF++  +N+  +  L        S+    + V    E  K+V TGTL  ++R+ A+E
Sbjct: 554 SVVEFFKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKE 613

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + + G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL LL+
Sbjct: 614 MIEKRGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEERFLELLK 664


>gi|299145622|ref|ZP_07038690.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_23]
 gi|298516113|gb|EFI39994.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_23]
          Length = 666

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 228/709 (32%), Positives = 356/709 (50%), Gaps = 51/709 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+     D N P 
Sbjct: 2   DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEYK---DENSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N +  +V H  P LSL   ++  ++  F  R+ +      +       E K D
Sbjct: 59  MRVGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKAL----NEDFEICCEMKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           GT I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ + 
Sbjct: 115 GTSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
              F  LN E  A     +ANPRNAASG L+  N + +                +   G 
Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGDNLPCDGH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK 
Sbjct: 235 YENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKN 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LH
Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-HPDAQPFSFPSF 433
           N D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F   
Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIVN 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S++VR          AAH C    AC  Q   +++HF+SR A NI+GLG + +D 
Sbjct: 404 CPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDM 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F++       IR  AD++ L             +   G+ S  N+   I + + +  ER 
Sbjct: 458 FYR----LGLIRNTADLYKLTADDIKG------LDRMGEKSAENIVTGIAQSKTVPFERV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG  +A+ +AK + +  +  Q           D   L+ +  +G+ IAQ+I+
Sbjct: 508 IFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIAQSIL 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYV 670
            ++ N  N   V  L KE    + R E+++S    ++  + +V +G      R + +E +
Sbjct: 558 AYFANESNRELVAKL-KEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFVHHSRDEYKELI 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            + G      +S KT  I+ GDN G +KLEKA++LG+ I++E++FL L+
Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665


>gi|326574755|gb|EGE24691.1| NAD-dependent DNA ligase [Moraxella catarrhalis 101P30B1]
          Length = 691

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 263/711 (36%), Positives = 389/711 (54%), Gaps = 45/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE+     +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGELLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+     + +E+RGEV +
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAK 252
            K  F  LN E IA G K +ANPRNAA+G LR+LN          FF + +         
Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   +Q +  LGF +    + A +   I ++Y  +   RS LP++IDGLV KV++ +LQ
Sbjct: 255 TQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N T
Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   I+ L            + VGD V V RAG+VIPKV  +I   R  DA+P   P+
Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+CQS +            A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L 
Sbjct: 423 VCPVCQSPISLPEGE------ALARCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF+       ++  ADI+ L +        +  + G GD SVT +  +I K +  +L R
Sbjct: 477 KFFE----MGLVQTVADIYKLHK----QAEYLITLEGMGDKSVTKMLSAIEKSKQTTLPR 528

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A SLA+ +   Q+  +           D  +L  VP +G+I AQ+I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F++   NI  V+AL++           + SS  +  +  V TGTL  + R +A++ + 
Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|326562480|gb|EGE12798.1| NAD-dependent DNA ligase [Moraxella catarrhalis 46P47B1]
 gi|326567201|gb|EGE17321.1| NAD-dependent DNA ligase [Moraxella catarrhalis 12P80B1]
 gi|326568292|gb|EGE18374.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC8]
          Length = 691

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 263/711 (36%), Positives = 388/711 (54%), Gaps = 45/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMCALIKLLKRHNHAYYVMDAPTISDGEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE      +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+     + +E+RGEV +
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAK 252
            K  F  LN E IA G K +ANPRNAA+G LR+LN          FF + +         
Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   +Q +  LGF +    + A +   I ++Y  +   RS LP++IDGLV KV++ +LQ
Sbjct: 255 TQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N T
Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   I+ L            + VGD V V RAG+VIPKV  +I   R  DA+P   P+
Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+CQS +            A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L 
Sbjct: 423 VCPVCQSPISLPEGE------ALARCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF+       ++  ADI+ L +        +  + G GD SVT +  +I K +  +L R
Sbjct: 477 KFFE----MGLVQTVADIYKLHK----QAEYLITLEGMGDKSVTKMLSAIEKSKQTTLPR 528

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A SLA+ +   Q+  +           D  +L  VP +G+I AQ+I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F++   NI  V+AL++           + SS  +  +  V TGTL  + R +A++ + 
Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|38233671|ref|NP_939438.1| NAD-dependent DNA ligase LigA [Corynebacterium diphtheriae NCTC
           13129]
 gi|81401524|sp|Q6NHQ4|DNLJ_CORDI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|38199932|emb|CAE49600.1| DNA ligase [Corynebacterium diphtheriae]
          Length = 677

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 217/713 (30%), Positives = 351/713 (49%), Gaps = 49/713 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +    R++   L +++ +H D YY +  P I D+E+D L R+   +    P+LA    P 
Sbjct: 4   NFADLRRQWDDLAEQVRHHRDAYYNH-TPEISDAEFDQLFRQLQQLEQEHPELAV---PE 59

Query: 73  GPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P  ++G  +   S   V H    LSL+ +++  +L  ++ R           S  +  E
Sbjct: 60  SPTLRVGAPVEQSSFDNVEHLERMLSLDNVFDAAELDDWLQRT---------PSATYLTE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEV 187
            KIDG  I + Y  G+   AA RGDG  GEDV+A  + I  IP  L       +PE++E+
Sbjct: 111 LKIDGLSIDLVYRSGRLERAATRGDGRVGEDVTANAKVIEDIPHRLQHSDAYPVPELVEI 170

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246
           RGEV+I+  DF  +N++    G KP+ANPRNAA+G LR+ +      R L    HG+G +
Sbjct: 171 RGEVFIAVEDFALVNEQRQKEGGKPFANPRNAAAGSLRQKDTEAVRKRRLKMICHGIGAS 230

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
               A  Q++  + +   G PV+   ++ ++   +          R    +++DGLV K+
Sbjct: 231 EGFEADTQFDAYKALEAWGLPVSPYTKRVHSAQEVQERVTYWAQHRHDATHEMDGLVIKI 290

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D F+ Q+ LG  AR+PRW I++K+  ++ +T+LLDI + +GRTG +TP A ++PV + G+
Sbjct: 291 DSFAEQRALGSTARAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMDPVFVAGS 350

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN+  +K            + + +GD V++++AGEVIP+V+  +V +R    +
Sbjct: 351 TVEMATLHNQTEVKR-----------KGVLIGDTVVIRKAGEVIPEVLGPVVEKRDGSER 399

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F FP+ CP C +R+         +  A  RC    +C AQ   RL +   R AF+IE L
Sbjct: 400 EFIFPTLCPACGTRLA-----PQKEDDADWRCPNSQSCPAQLSSRLTYLAGRGAFDIEAL 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++  +        +  +   A +F L       T       G  + +   L  ++   +
Sbjct: 455 GEKGAEDLI----ASGVLIDEAQLFNLTEDDLKRTKVYTTKAGALNATGEKLLANLESAK 510

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +  L R + +L IRHVG   AR+LA  Y S +               D   +     VG 
Sbjct: 511 HTDLWRVLVALSIRHVGPTAARALAVRYRSLEALRAA----------DVEDIANTEGVGA 560

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           IIAQ+  +++  P +   VE                    +E   +V TG+L    R  A
Sbjct: 561 IIAQSFAQWFDVPWHRNIVEVWADAGVTMADSEADIPDQVLEGLTIVVTGSLVDFSRDSA 620

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E +   G   S  +S+KT  ++VG+N GSK  KA+ LG++I+NE++F  LL 
Sbjct: 621 KEAIVSRGGKASGSVSKKTSYVVVGENAGSKETKARDLGLRILNEDEFKQLLA 673


>gi|254820448|ref|ZP_05225449.1| NAD-dependent DNA ligase LigA [Mycobacterium intracellulare ATCC
           13950]
          Length = 693

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 216/711 (30%), Positives = 346/711 (48%), Gaps = 43/711 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R++   L + +  H   YY    PII D+E+D++     A+    P+L  +   + P 
Sbjct: 12  EVRRQWQDLAEAVREHQFRYYIKDAPIISDAEFDSMFNELLALEERHPELRVA---DSPT 68

Query: 76  NKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             +GG        +  H    LSL+ +++ ++L  +  R+     K+      +  E KI
Sbjct: 69  QLVGGAGFATDFAEAQHLERMLSLDDVFDRDELVAWSNRVENEVGKEPH----YLCELKI 124

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV----LSLNIPEIIEVRGE 190
           DG  +++ Y  G+   AA RGDG  GEDV+   R I  +P           P ++EVRGE
Sbjct: 125 DGVALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLSAGKDFPAPSLLEVRGE 184

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V+    DF ALN  ++  G+ P+ANPRN+A+G LR+ NP     R L    HG+G+T   
Sbjct: 185 VFFLLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGRTEGF 244

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             K Q+E    ++  G PV     +      +          R  L ++IDG+V KVD+ 
Sbjct: 245 APKTQHEAYAALKAWGLPVAEQTARVRGLAAVEERIGYWGEHRYDLEHEIDGVVVKVDDV 304

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  +R+PRW +++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ + 
Sbjct: 305 ALQRRLGTTSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVG 364

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   +K            + + +GD V++++AG+VIP+V+  +V+ R    + F 
Sbjct: 365 LATLHNAAEVKR-----------KGVLIGDTVMIRKAGDVIPEVLGPVVDLRDGSEREFV 413

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +         +  A  RC    +C AQ  ER+ H   R AF+IEGLG +
Sbjct: 414 MPTTCPECDTPLA-----PAKEGDADIRCPNARSCPAQLRERVFHVAGRGAFDIEGLGYE 468

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                 K+E     I    D+FTL       T       G    +   L D+++K + ++
Sbjct: 469 AAIALLKAE----VIADEGDLFTLTEDDLLRTELFRTKAGTLSANGRRLLDNLDKAKKVA 524

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L IRHVG   AR+LA  +                       L  V  VG  IA
Sbjct: 525 LWRVLVALSIRHVGPTAARALATEFGDLDAIVSA----------STERLAAVEGVGPTIA 574

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            A+ E++    +   V+             + +V   +E   +V TG+L    R  A+E 
Sbjct: 575 AALTEWFTVDWHRAIVDKWRAAGVRMADERDTSVPRTLEGLTVVVTGSLAGFSRDDAKEA 634

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +   G   +  +S+KTD ++ GD+PGSK +KA +LGV +++E+ F  LL  
Sbjct: 635 ILARGGKAAGSVSKKTDYVVAGDSPGSKYDKAVELGVPVLDEDGFRRLLAD 685


>gi|296113927|ref|YP_003627865.1| NAD-dependent DNA ligase [Moraxella catarrhalis RH4]
 gi|295921621|gb|ADG61972.1| NAD-dependent DNA ligase [Moraxella catarrhalis RH4]
          Length = 691

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 262/711 (36%), Positives = 388/711 (54%), Gaps = 45/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE+     +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGELLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+     + +E+RGEV +
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAK 252
            K  F  LN E IA G K +ANPRNAA+G LR+LN          FF + +         
Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   +Q +  LGF +    + A +   I ++Y  +   RS LP++IDGLV KV++ +LQ
Sbjct: 255 TQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N T
Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   I+ L            + VGD V V RAG+VIPKV  +I   R  DA+P   P+
Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+CQS +            A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L 
Sbjct: 423 VCPVCQSPISLPEGE------ALARCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF+       ++  ADI+ L +        +  + G GD SV  +  +I K +  +L R
Sbjct: 477 KFFE----MGLVQTVADIYKLHK----QAEYLITLEGMGDKSVAKMLSAIEKSKQTTLPR 528

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A SLA+ +   Q+  +           D  +L  VP +G+I AQ+I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F++   NI  V+AL++           + SS  +  +  V TGTL  + R +A++ + 
Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|147669216|ref|YP_001214034.1| DNA ligase, NAD-dependent [Dehalococcoides sp. BAV1]
 gi|190359250|sp|A5FRL4|DNLJ_DEHSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146270164|gb|ABQ17156.1| DNA ligase, NAD-dependent [Dehalococcoides sp. BAV1]
          Length = 680

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 236/707 (33%), Positives = 372/707 (52%), Gaps = 43/707 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+ +L +EI+ H+  YY    P I D++YD L RR   +  A P+L     P+ P  ++G
Sbjct: 10  EVENLRREINRHNQLYYVQDNPEISDAQYDTLIRRLKELEEAHPELV---TPDSPTQRVG 66

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            E   +   V H  P LSL   ++  +L  +  R+ +      +       EPK+DG  +
Sbjct: 67  AEPLKAFGIVNHPYPLLSLANAFSDTELEAWYQRVKKLLG---NIPFQIDCEPKMDGLAV 123

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + Y  GKF   A RGDG  GE+++  +R I +IP     N P + EVRGEVY+SKN F 
Sbjct: 124 ALTYRNGKFATGATRGDGFQGENITRNLRTIHSIPLNAEPNAPPVFEVRGEVYLSKNGFA 183

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYEM 257
            LN E    G   +ANPRNAA+G LR+L+P+    R L+ F++ LG + + +     +++
Sbjct: 184 KLNRERADKGLPLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYSEDSLLPDSHWQI 243

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L     +GF +N   R  NT      YY +M + R++LPY+ DG+V+KVD  SLQ +LG+
Sbjct: 244 LDYFSKIGFRINPLNRLVNTLEEAKEYYRQMAANRASLPYEADGVVFKVDSVSLQHRLGD 303

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             R PRW I++KF  +Q  TRL  I I +GRTG L P A LEPVN+GG ++  A LHNED
Sbjct: 304 VGREPRWAIAYKFPAEQVMTRLKKIGISVGRTGTLNPFAVLEPVNVGGVVVKQAALHNED 363

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC--- 434
            I             +DIR GD V+++RAGEVIP+VV  ++++R+P+++PF         
Sbjct: 364 DI-----------LRKDIREGDTVIIQRAGEVIPEVVAPVLSKRNPESKPFRMEESLFNP 412

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
            + ++               A      ++C AQ   +L+HFVSR A +I G+G+      
Sbjct: 413 NLNRTACPVCGGEIYRPAGEAMHYCANVSCPAQFERQLEHFVSRGAMDIRGIGESLSVIL 472

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +       ++  +D++ L      +T  +  +   G+ S  N+ D+I   +   L+R I
Sbjct: 473 AQQ----GLVKNVSDLYYL------TTADLLQLPRMGEKSADNIIDAIADSKTRPLDRVI 522

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F LG+RHVG E A  L+++Y +    A+               L  +P +GD IA +IV 
Sbjct: 523 FGLGVRHVGNETATLLSRHYGNIWALAKTGLG----------ELQTIPDIGDKIASSIVA 572

Query: 615 FYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           ++   +N+  +  L +     +  +   N +      + V TG L+   R +AQE +  L
Sbjct: 573 YFSEEKNVAVIRRLEEAGVRLTSDQKPVNKNMPFSGMEFVVTGKLESFSREEAQEKIRSL 632

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G      +++ T+ ++VG + GSKL KA+ +GVK ++E +F+ +L+Q
Sbjct: 633 GGTAKDNVTKATNYLVVGADAGSKLTKARSMGVKELSEREFINMLEQ 679


>gi|328552313|gb|AEB22805.1| NAD-dependent DNA ligase LigA [Bacillus amyloliquefaciens TA208]
          Length = 668

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 244/715 (34%), Positives = 397/715 (55%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A+     L + I  +   YY   +P + DSEYD L +   AI    P+L     P
Sbjct: 1   MDKETAKHRADELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPEL---RTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  S  KV H  P LSL   +N +D    +    R  ++   + + + +E
Sbjct: 58  DSPTQRVGGAVLESFQKVQHGTPMLSLGNAFNDDD----LRDFDRRVRQAVGDGVAYNVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +       IEVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKM--KRNLSIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           ++ K  F ALN+E +    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+ 
Sbjct: 172 FMPKQSFEALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q + L  +  LGF  N   +Q  T   ++    E+++ R+ LPY+IDG+V KVD   
Sbjct: 232 VETQSQGLDFLDELGFKTNQERKQCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ 
Sbjct: 292 QQEELGYTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED IK            +DIR+ D+V+VK+AG++IP+VV++++ +R  + + F+ 
Sbjct: 352 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTVCPECESELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       +R  AD++ L + Q         +   G+ S  NL  SI K +  SL
Sbjct: 454 ITQLFRE----HLVRNVADLYKLTKEQVI------RLERMGEKSTDNLISSIQKSKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA ++ S +N  Q               L+ V  +G+ +A 
Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKQATE----------EELLAVDEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A++ +++    +  +  L +    ++ +       ++  S    K +V TG L+++ R++
Sbjct: 554 AVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+KTD++I G+  GSKL KAQ+L +++ +E Q L  L++
Sbjct: 614 AKTQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWDEAQLLGELKK 668


>gi|326564268|gb|EGE14498.1| NAD-dependent DNA ligase [Moraxella catarrhalis 103P14B1]
          Length = 691

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 263/711 (36%), Positives = 389/711 (54%), Gaps = 45/711 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +Q   ++ +L + +  H+  YY    P I D EYD L+R    +    P+L +   P+ P
Sbjct: 21  DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           +N +GGE+     +V H +P LSL  ++N +DL  F+ R         D    + +E K+
Sbjct: 78  INTVGGELLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAID---EYEMELKL 134

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  ++++Y+ G+F  A  RGDG  GED++  +R I  +P  L+     + +E+RGEV +
Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLM 194

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAK 252
            K  F  LN E IA G K +ANPRNAA+G LR+LN          FF + +         
Sbjct: 195 PKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGIT 254

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   +Q +  LGF +    + A +   I ++Y  +   RS LP++IDGLV KV++ +LQ
Sbjct: 255 TQSGAMQWLGQLGFEIAP-SKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNLQ 313

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R PRW  ++KF  +   TRL+D++ Q+GRTG LTPV RLEP+ +GG  ++N T
Sbjct: 314 ARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVT 373

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN   I+ L            + VGD V V RAG+VIPKV  +I   R  DA+P   P+
Sbjct: 374 LHNFGEIERL-----------GVMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLPT 422

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+CQS +            A  RCTGGL C+AQQ E L HFVSR A +I+GLG Q L 
Sbjct: 423 VCPVCQSPISLPEGE------ALARCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWLI 476

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF+       ++  ADI+ L +        +  + G GD SVT +  +I K +  +L R
Sbjct: 477 KFFE----MGLVQTVADIYKLHK----QAEYLITLEGMGDKSVTKMLSAIEKSKQTTLPR 528

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR VG   A SLA+ +   Q+  +           D  +L  VP +G+I AQ+I
Sbjct: 529 FIFALGIRGVGESTALSLAQQFGELQSIIEA----------DLQALQAVPDIGEITAQSI 578

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVT 671
            +F++   NI  V+AL++           + SS  +  +  V TGTL  + R +A++ + 
Sbjct: 579 YDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKLI 638

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA V+  +S KT  ++ G+  GSKLEKAQ+LGV ++ E++FL L+  YN
Sbjct: 639 ALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689


>gi|145295383|ref|YP_001138204.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum R]
 gi|166215581|sp|A4QDK5|DNLJ_CORGB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|140845303|dbj|BAF54302.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 680

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 217/717 (30%), Positives = 351/717 (48%), Gaps = 52/717 (7%)

Query: 12  LSIEQARKE--LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           ++ + A+     + L +++ YH D YY   +P I D+++DAL ++   +    P+LA   
Sbjct: 1   MTEDNAQLRRTWNDLAEKVRYHRDRYYNE-QPEIPDADFDALFKQLQQLEEDHPELAV-- 57

Query: 70  DPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            P+ P   +G  +    S   V H    LSL+ +++ ++LR ++ R           +  
Sbjct: 58  -PDSPTMVVGAPVAEQSSFDNVEHLERMLSLDNVFDEQELRDWLGRT---------PAKQ 107

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PE 183
           +  E KIDG  I + Y  G+   AA RGDG  GED++A  R I  IP  L        P 
Sbjct: 108 YLTELKIDGLSIDLVYRNGQLERAATRGDGRVGEDITANARVIEDIPHQLQGTDEYPVPA 167

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHG 242
           ++E+RGEV+I+  DF  +N + IA G KP+ANPRNAA+G LR+ N  D   R L    HG
Sbjct: 168 VLEIRGEVFITVEDFPEVNAQRIADGGKPFANPRNAAAGSLRQKNIEDVKKRRLRMISHG 227

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +G T       Q++    +   G P +           +V   +     R    +++DGL
Sbjct: 228 IGFTEGFSPASQHDAYLALAAWGLPTSPYTEAVTDPEDVVKKVSYWADHRHDALHEMDGL 287

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVD+ + Q+ LG  +R+PRW I++K+  ++ +T+LLDI + +GRTG +TP A +EPV 
Sbjct: 288 VIKVDDIASQRALGSTSRAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMEPVL 347

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G+ ++ ATLHN+  +K            + + +GD V++++AGEVIP+V+  +V  R 
Sbjct: 348 VAGSTVSMATLHNQSEVKR-----------KGVLIGDTVVIRKAGEVIPEVLGPVVELRD 396

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              + + FP+ CP C +R+               RC    +C  Q   RL +   R AF+
Sbjct: 397 GTEREYIFPTLCPECGTRLA-----PAKADDVDWRCPNMQSCPGQLSTRLTYLAGRGAFD 451

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IE LG++  +   ++      +   + +F L      S+       G  + S   L D++
Sbjct: 452 IEALGEKGAEDLIRT----GILLDESGLFDLTEDDLLSSNVYTTNAGKVNASGKKLLDNL 507

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K +   L R + +L IRHVG   AR+LA  Y S Q                   L    
Sbjct: 508 QKSKQTDLWRVLVALSIRHVGPTAARALAGRYHSIQALIDAP----------LEELSETD 557

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            VG IIAQ+  ++++   +   V+              +     +E   +V TG L+   
Sbjct: 558 GVGTIIAQSFKDWFEVDWHKAIVDKWAAAGVTMEEEVGEVAEQTLEGLTIVVTGGLEGFT 617

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R   +E +   G   S  +S+KTD ++VG+N GSK  KA++LG++I++E  F+ LL 
Sbjct: 618 RDSVKEAIISRGGKASGSVSKKTDYVVVGENAGSKATKAEELGLRILDEAGFVRLLN 674


>gi|237717569|ref|ZP_04548050.1| DNA ligase [Bacteroides sp. 2_2_4]
 gi|293371586|ref|ZP_06618001.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CMC 3f]
 gi|229453155|gb|EEO58946.1| DNA ligase [Bacteroides sp. 2_2_4]
 gi|292633449|gb|EFF52017.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CMC 3f]
          Length = 666

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 227/709 (32%), Positives = 356/709 (50%), Gaps = 51/709 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+     D N P 
Sbjct: 2   DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEYK---DENSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N +  +V H  P LSL   ++  ++  F  R+ +      +       E K D
Sbjct: 59  MRVGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKAL----NEDFEICCEMKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           GT I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ + 
Sbjct: 115 GTSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
              F  LN E  A     +ANPRNAASG L+  N + +                +   G 
Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGDNLPCDGH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK 
Sbjct: 235 YENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKN 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LH
Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-HPDAQPFSFPSF 433
           N D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F   
Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIVN 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S++VR          AAH C    AC  Q   +++HF+SR A NI+GLG + +D 
Sbjct: 404 CPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDM 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F++       I+  AD++ L             +   G+ S  N+   I + + +  ER 
Sbjct: 458 FYR----LGLIKNTADLYKLTADDIKG------LDRMGEKSAENIITGIAQSKTVPFERV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG  +A+ +AK + +  +  Q           D   L+ +  +G+ IAQ+I+
Sbjct: 508 IFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIAQSIL 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYV 670
            ++ N  N   V  L KE    + R E+++S    ++  + +V +G      R + +E +
Sbjct: 558 AYFANESNRELVAKL-KEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFVHHSRDEYKELI 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            + G      +S KT  I+ GDN G +KLEKA++LG+ I++E++FL L+
Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665


>gi|160884627|ref|ZP_02065630.1| hypothetical protein BACOVA_02616 [Bacteroides ovatus ATCC 8483]
 gi|156110366|gb|EDO12111.1| hypothetical protein BACOVA_02616 [Bacteroides ovatus ATCC 8483]
          Length = 666

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 228/709 (32%), Positives = 357/709 (50%), Gaps = 51/709 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+     D N P 
Sbjct: 2   DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEYK---DENSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N +  +V H  P LSL   ++  ++  F  R+ +      +       E K D
Sbjct: 59  MRVGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKAL----NEDFEICCEMKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           GT I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P+  E+RGE+ + 
Sbjct: 115 GTSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPDSFEIRGEILMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
              F  LN E  A     +ANPRNAASG L+  N + +                +   G 
Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGDNLPCDGH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK 
Sbjct: 235 YENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKN 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LH
Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-HPDAQPFSFPSF 433
           N D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F   
Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIVN 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S++VR          AAH C    AC  Q   +++HF+SR A NI+GLG + +D 
Sbjct: 404 CPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDM 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F++       I+  AD++ L             +   G+ S  NL   I + + +  ER 
Sbjct: 458 FYR----LGLIKNTADLYKLTADDIKG------LDRMGEKSAENLITGIAQSKTVPFERV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG  +A+ +AK + +  +  Q           D   L+ +  +G+ IAQ+I+
Sbjct: 508 IFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIAQSIL 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYV 670
            ++ N  N   V  L KE    + R E+++S    ++  + +V +G      R + +E +
Sbjct: 558 AYFANESNRELVAKL-KEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFVHHSRDEYKELI 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            + G      +S KT  I+ GDN G +KLEKA++LG+ I++E++FL L+
Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665


>gi|308172548|ref|YP_003919253.1| DNA ligase [Bacillus amyloliquefaciens DSM 7]
 gi|307605412|emb|CBI41783.1| DNA ligase [Bacillus amyloliquefaciens DSM 7]
 gi|328910657|gb|AEB62253.1| DNA ligase [Bacillus amyloliquefaciens LL3]
          Length = 669

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 244/715 (34%), Positives = 397/715 (55%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A+     L + I  +   YY   +P + DSEYD L +   AI    P+L     P
Sbjct: 2   MDKETAKHRADELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPEL---RTP 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  S  KV H  P LSL   +N +D    +    R  ++   + + + +E
Sbjct: 59  DSPTQRVGGAVLESFQKVQHGTPMLSLGNAFNDDD----LRDFDRRVRQAVGDGVAYNVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +       IEVRGE 
Sbjct: 115 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKM--KRNLSIEVRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           ++ K  F ALN+E +    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+ 
Sbjct: 173 FMPKQSFEALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q + L  +  LGF  N   +Q  T   ++    E+++ R+ LPY+IDG+V KVD   
Sbjct: 233 VETQSQGLDFLDELGFKTNQERKQCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLD 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ 
Sbjct: 293 QQEELGYTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED IK            +DIR+ D+V+VK+AG++IP+VV++++ +R  + + F+ 
Sbjct: 353 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTVCPECESELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       +R  AD++ L + Q         +   G+ S  NL  SI K +  SL
Sbjct: 455 ITQLFRE----HLVRNVADLYKLTKEQVI------RLERMGEKSTDNLISSIQKSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA ++ S +N  Q               L+ V  +G+ +A 
Sbjct: 505 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKQATE----------EELLAVDEIGEKMAD 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A++ +++    +  +  L +    ++ +       ++  S    K +V TG L+++ R++
Sbjct: 555 AVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+KTD++I G+  GSKL KAQ+L +++ +E Q L  L++
Sbjct: 615 AKTQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWDEAQLLGELKK 669


>gi|103486042|ref|YP_615603.1| DNA ligase, NAD-dependent [Sphingopyxis alaskensis RB2256]
 gi|123078573|sp|Q1GVQ2|DNLJ_SPHAL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|98976119|gb|ABF52270.1| DNA ligase, NAD-dependent [Sphingopyxis alaskensis RB2256]
          Length = 714

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 272/733 (37%), Positives = 407/733 (55%), Gaps = 57/733 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +  + +L+  +A  EL  L ++I++H+  Y+    P I D++YDAL RR  AI  AFP L
Sbjct: 1   MKDVGSLTEAEAANELMRLAKQIAHHNKLYHAEDSPEISDADYDALVRRNTAIEEAFPHL 60

Query: 66  ARSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
            R+   + P   +G  +    L KVTH+   +SL+  +  ED+ +F  R+ RF    +  
Sbjct: 61  IRA---DSPNRLVGAAVEASPLAKVTHAQRMMSLDNAFAAEDVEEFAARVRRFLNLDEGE 117

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + FT E KIDG   ++RYEKG  V AA RGDG  GEDV+  +R I  IP+ L  +IP+I
Sbjct: 118 PLAFTAEDKIDGLSCSLRYEKGVLVQAATRGDGTVGEDVTPNVRTIADIPQNLKGDIPDI 177

Query: 185 IEVRGEVYISKNDFLALNDEM-----IAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
            E+RGEVY++K DF ALN  +          + +ANPRNAA+G LR+ + +   +R L F
Sbjct: 178 FEIRGEVYMAKADFAALNARLLAEADDPDKARQFANPRNAAAGSLRQKDASVTASRPLRF 237

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
             HG G+ S + A  QY +++ +   G PV+  +++ +    ++ +Y  +++ R+ LPYD
Sbjct: 238 LAHGWGEVSALPADTQYAVMKAIESWGVPVSPLLKRCDGVADLLDHYRMIEAERAELPYD 297

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD    Q +LG  AR+PRW I+HKF  ++A T L  IDIQ+GRTG LTPV RL
Sbjct: 298 IDGVVYKVDRLDWQARLGFVARAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRL 357

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV +GG +++N TLHN D I  L            +R GDR++V+RAG+VIP+V  +  
Sbjct: 358 TPVTVGGVVVSNVTLHNRDEIARL-----------GVRPGDRIIVQRAGDVIPQV--VEN 404

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             R    +P+ FP  CP+C S  V +            RCTGGL C+AQ+ ERL+HFVSR
Sbjct: 405 LTRDEPREPYVFPDHCPVCGSEAVAEDGE------VDVRCTGGLICNAQKFERLRHFVSR 458

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +IEGLG++ +  F +     +  + PADIF L+  ++    ++    G+ + SV NL
Sbjct: 459 GALDIEGLGEKSIAEFLE---LGWLEKGPADIFRLKSHRE----ELLAREGWKERSVDNL 511

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---- 594
             +I  +R     R +F LGIRHVGA  AR L K          +   + A    +    
Sbjct: 512 LAAIEAKRQPDAARLLFGLGIRHVGAVTARDLLKGIGDIARLPGKAAELRAWVEANPRIE 571

Query: 595 -----------WLSLIRV-----PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638
                        ++  +       +G  +A+A+ +F+  P N    + LL EVSP    
Sbjct: 572 GESEGKYAARRLEAIKAILDVRADGIGPAVAEALGDFFHEPHNRVLWDDLLSEVSPPPYV 631

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
            E    SE+  K +VFTG L+ + R +A+     LGA  +  +S KTD+++ G   GSKL
Sbjct: 632 VETR-DSEVSGKTVVFTGKLETMSRDEAKAQAEALGAKAAGSVSAKTDLVVAGPGAGSKL 690

Query: 699 EKAQQLGVKIMNE 711
           ++A  LG+++++E
Sbjct: 691 KQAASLGIRVIDE 703


>gi|260662792|ref|ZP_05863686.1| DNA ligase, NAD-dependent [Lactobacillus fermentum 28-3-CHN]
 gi|260552873|gb|EEX25872.1| DNA ligase, NAD-dependent [Lactobacillus fermentum 28-3-CHN]
          Length = 679

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 243/726 (33%), Positives = 392/726 (53%), Gaps = 51/726 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K++   +  L+ +QA+ EL+ L +++      YY+   P + D  YD   +R   I  
Sbjct: 1   MSKQE--AVSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQ 58

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FPDL     P+ P  ++GG     L KVTH IP LS+  +++  +L  F  R       
Sbjct: 59  RFPDLVV---PDSPTQRVGGAAESQLNKVTHEIPMLSMGDVFSPAELADFNRRQQD--NS 113

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                  + LE KIDG  +++ YE G+ V  + RG+G  GEDV+  ++ I +IP+VL   
Sbjct: 114 DVKVDFDYNLELKIDGLSLSLVYENGRLVQGSTRGNGTIGEDVTENVKTIKSIPQVLPEP 173

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +   +E RGE Y+ K  F+ LN+   A G+  +ANPRNAA+G LR+L+P     R L+ F
Sbjct: 174 LS--LEFRGECYMPKEAFVKLNERREAEGQPVFANPRNAAAGSLRQLDPKVTAARQLDTF 231

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ +     +    Q + L+KMR LGF VN   R  ++   + +Y  E    R  LPY I
Sbjct: 232 MYYVPDYQALGVTTQAQALEKMRALGFAVNPNYRVVHSQAELTAYIEEYTEKRDQLPYGI 291

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV++ + Q  LG   + PRW I++KF  ++ +T + DI+  +GRTG +TP A ++
Sbjct: 292 DGIVEKVNDLATQVALGNTVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMD 351

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  ++ A+LHN DY+             +DIR+GD VL+ +AG++IP++  +I+ 
Sbjct: 352 PVQLAGTTVSRASLHNPDYL-----------AEKDIRLGDTVLLHKAGDIIPEISRVIIE 400

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  D++P+  P+ CP C + +V   +        A RC   + C AQ  E L HF SR+
Sbjct: 401 KRPADSKPYEVPTTCPECGADLVHLDDE------VALRCVNPM-CPAQIKEGLAHFASRN 453

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NI+GLG + ++  +        ++  AD++ L+  Q  +      +  FG+ S++NL 
Sbjct: 454 AMNIDGLGPKIIEQLWDK----GMVKDVADLYRLEAAQLLT------LPKFGEKSISNLL 503

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R+ S ER +F LGIRHVGA++A+ LA  + S                 D  ++ 
Sbjct: 504 TAIANSRHNSCERLLFGLGIRHVGAKVAQLLAAEFKSVDALMAA----------DAATIS 553

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTG 656
            V  +G II  A+  ++QN +    +  L +                S+E   K++V TG
Sbjct: 554 AVDSIGPIIGDAVATYFQNEQVHQLIAELKEVGVNMDYLAPTTSATESAEWAGKRVVLTG 613

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L K+ R +AQE+++  GA V+  +S+KTD++I G+  GSKLEKAQ LG+++ +E++F  
Sbjct: 614 KLTKMTRGQAQEWLSARGASVTGSVSKKTDLLIAGEKAGSKLEKAQTLGIEVWDEDRFDQ 673

Query: 717 LLQQYN 722
            +++ N
Sbjct: 674 AMKEEN 679


>gi|225851368|ref|YP_002731602.1| DNA ligase, NAD-dependent [Persephonella marina EX-H1]
 gi|254781385|sp|C0QSF6|DNLJ_PERMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225645574|gb|ACO03760.1| DNA ligase, NAD-dependent [Persephonella marina EX-H1]
          Length = 714

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 256/721 (35%), Positives = 379/721 (52%), Gaps = 56/721 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + E A   +  L   I YHD  YY  + P+I D EYD L      I   FP+L     P+
Sbjct: 27  TKEDAEAIIEDLRDVIRYHDWRYYVLANPVISDYEYDQLFHLLKDIESRFPELI---TPD 83

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++  E+     +V H  P LSL+  +N EDLR+F  R+           I + +EP
Sbjct: 84  SPTQRVPSELTKEFPQVKHLAPMLSLDNSYNEEDLREFDRRVREAVGIDI---IEYAVEP 140

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGE 190
           K DG  I++ YEK  FV  A RGDG  GED++  IR I T+P     ++     IE+RGE
Sbjct: 141 KFDGAGISLVYEKDMFVRGATRGDGVVGEDITPNIRVIKTVPLSAEFSVYGIDRIEIRGE 200

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSE- 248
           V I+K  F  +N + +  G  P ANPRNAA+G LR  +P +   R L  FV+ +    + 
Sbjct: 201 VLINKEKFKEINHQRLEEGLPPLANPRNAAAGSLRLQDPKEVAKRGLEAFVYQITYAVDK 260

Query: 249 -------IFAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDID 300
                     +  Y+ ++ +  LGF      ++       ++ Y  E +  R   PY+ID
Sbjct: 261 DGNNLLGNKLRYHYDSIKILYELGFKSPYKEIKVCRGIDEVIDYCREWERKRDDYPYEID 320

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KV++ SL  +LG  +  PRW I+ KF  +QA+T+++ +  Q+GRTG +TPVA+LEP
Sbjct: 321 GMVIKVNDISLYDRLGVTSHHPRWAIAFKFRARQATTKIIKVVFQVGRTGAVTPVAKLEP 380

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V IGG  +++ +L NED+IK            +DIRVGD VL++RAG+VIP VV ++   
Sbjct: 381 VEIGGVTVSSVSLINEDFIK-----------EKDIRVGDLVLIERAGDVIPYVVKVVTEA 429

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R    +P  FP  CP C S +V+          A  RC   + C AQ +ER+ +F S+DA
Sbjct: 430 RTGKEKPIQFPKECPSCGSPLVKPAGE------AVWRCIN-INCPAQVVERIIYFASKDA 482

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I GLG+  +  F++       +R   DI+ L   +         + GFG  SV NL  
Sbjct: 483 MDIRGLGEANIRKFYQ----LGFLRSIPDIYRLPYDKII------QLEGFGQKSVENLKK 532

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I + +N  + R I  LGIR VG   AR+LA+     ++                  L R
Sbjct: 533 AIEESKNRPINRLITGLGIRFVGKVTARTLAENINCVEDLKDW----------SVEDLER 582

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +P VG ++A +I +F+ NP NI  ++ L +    +    E+ V +  E K  VFTGTL  
Sbjct: 583 LPDVGYVVAHSIYDFFHNPDNIKMIQELKRLGVQTCKEKEEVVENIFEGKTFVFTGTLSC 642

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             R  AQE V +LG   S+ +SRKT  ++VG+NPGSK  KA  LGV+I++E+QF+ +++ 
Sbjct: 643 CSREIAQEIVERLGGHASSSVSRKTSYVVVGENPGSKYRKALSLGVQILDEKQFIEMIKD 702

Query: 721 Y 721
           +
Sbjct: 703 H 703


>gi|225377122|ref|ZP_03754343.1| hypothetical protein ROSEINA2194_02767 [Roseburia inulinivorans DSM
           16841]
 gi|225211027|gb|EEG93381.1| hypothetical protein ROSEINA2194_02767 [Roseburia inulinivorans DSM
           16841]
          Length = 668

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 212/710 (29%), Positives = 361/710 (50%), Gaps = 47/710 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A + ++ L++ + YH D YY    P I D EYD + +    +    P+L     P
Sbjct: 1   MKKMSAEERIAELKKTLEYHIDRYYNQDSPEISDYEYDMMMQELKNLEKEHPELV---TP 57

Query: 72  NGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++GG     +   V H++P LSL+ +++ E++  F+  + +           F +
Sbjct: 58  DSPTQRVGGTAKREAGVLVRHNVPMLSLQDVFSKEEVFNFVEEMQKQLDHP-----EFVV 112

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           E KIDG  +++RYE G+ + A  RGDG + GEDV+A  + I  + + L    PE +E+RG
Sbjct: 113 EYKIDGLSMSLRYENGELILAETRGDGINFGEDVTANAKVIKDVKQKLKDK-PEYLEIRG 171

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EVY+    F  +N+    +G+K +ANPRN A+G LR+L+      R L+ F+  + +   
Sbjct: 172 EVYMKNAAFEKVNETQELLGKKVFANPRNCAAGTLRQLDSKVTKERDLSMFIFNIQQVRG 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E  + ++  G  V +  +   T   +      +   R  L YDIDG V K++ 
Sbjct: 232 MEFATHTEGYEFLKKQGIHVIDDYKVCTTAEEVWDAITAIGENRGNLAYDIDGAVVKINR 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           FS ++QLGE ++ PRW I++K+  ++  +RLL+I++ +GRTG +TP A  EPV + G  +
Sbjct: 292 FSDREQLGETSKVPRWAIAYKYPPEEKESRLLNIELSVGRTGRITPTAVFEPVRLCGTSV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN+D+I  L           DI +GD ++V ++GE+IPK+ ++   +R  D + F
Sbjct: 352 SRATLHNQDFIDDL-----------DIGIGDTIVVYKSGEIIPKIKEVKKEKRPSDWKRF 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C ++  R+ +       A  RCT    C AQ    + +FV RDA +I+G G 
Sbjct: 401 VIPDVCPVCGAKTEREKD------TADIRCTSP-NCPAQLERHIINFVGRDAMDIKGFGT 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             ++   +       I   AD+F L+  +     +        + +   L D+I K +  
Sbjct: 454 VYIEELVR----LGYINNVADVFVLKTHRDELIDQGII---GKEKNTDKLLDAIEKSKEN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              + +  LGI +VG   A+++ KY+    +  +               L  V  +G++ 
Sbjct: 507 DAYKLLTGLGIPNVGKAAAKAIMKYFKDMDHLKEA----------SVEQLTEVNDIGEVS 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A  I  F+ + +NI  ++ L +          + V S +  K +V TGTL  + R +A E
Sbjct: 557 ALCIRNFFTDEKNIEILDRLKEYGVNMQAEETETVESVLTGKTVVVTGTLPTLGRKEASE 616

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + + G   S  +S+KTD ++ G+N GSKL KAQ+LG+ +++EEQ   +L
Sbjct: 617 LIEKYGGKASGSVSKKTDYVLAGENAGSKLTKAQELGIPVISEEQLKEML 666


>gi|52313150|emb|CAH55605.1| DNA ligase (NAD dependent) [Bacillus amyloliquefaciens FZB42]
          Length = 668

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 245/715 (34%), Positives = 397/715 (55%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A+     L + I  +   YY   +P + DSEYD L +   AI    P+L     P
Sbjct: 1   MDKETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPEL---RTP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  S  KV H  P LSL   +N +D    +    R  ++   + + + +E
Sbjct: 58  DSPTQRVGGAVLESFQKVQHGTPMLSLGNAFNDDD----LRDFDRRVRQAVGDGVAYNVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +       IEVRGE 
Sbjct: 114 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKM--KRNLSIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F ALN+E +    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+ 
Sbjct: 172 YMPKQSFEALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q + L  +  LGF  N   ++  T   ++    E+++ R+ LPY+IDG+V KVD   
Sbjct: 232 VETQSQGLDFLDELGFKTNQERKKCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLD 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ 
Sbjct: 292 QQEELGYTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED IK            +DIR+ D+V+VK+AG++IP+VV++++ +R  + + F+ 
Sbjct: 352 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 401 PTGCPECESELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       +R  AD++ L + Q         +   G+ S  NL  SI K +  SL
Sbjct: 454 ITQLFRE----HLVRNVADLYKLTKEQVI------RLERMGEKSTDNLISSIQKSKENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA ++ S +N  Q               L+ V  +G+ +A 
Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKQVTE----------EELLAVDEIGEKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A++ +++    +  +  L +    ++ +       ++  S    K +V TG L+++ R++
Sbjct: 554 AVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+KTD++I G+  GSKL KAQ+L +++ NE Q L  L++
Sbjct: 614 AKAQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWNEAQLLGELKK 668


>gi|260684853|ref|YP_003216138.1| DNA ligase [Clostridium difficile CD196]
 gi|260688511|ref|YP_003219645.1| DNA ligase [Clostridium difficile R20291]
 gi|260211016|emb|CBA66332.1| DNA ligase [Clostridium difficile CD196]
 gi|260214528|emb|CBE07046.1| DNA ligase [Clostridium difficile R20291]
          Length = 677

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 224/711 (31%), Positives = 374/711 (52%), Gaps = 50/711 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +     + E++ L + I+YH++ YY    P I D EYD L +   ++    P+L R    
Sbjct: 1   MQKVSVKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRI--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P N++GG+      ++ H  P LSL   ++ +DLR F  R+  +  +    ++ + +E
Sbjct: 58  DSPTNRVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + + Y  G+F   A RGDG  GED+S  +  + +IP  L +N  + + VRGEV
Sbjct: 114 FKIDGLSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           YISK++F  +N++     +  +ANPRN A+G LR+L+P     R L+ FV  +    E  
Sbjct: 172 YISKDNFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYD 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   E L+ +  LGF V+   +   +   ++ +       R  L Y+IDG+V KV+   
Sbjct: 232 LESHSESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIK 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            + ++G  A+SPRW I++KF  ++  T+++DI +++GRTG +TP A LEPV + G  ++ 
Sbjct: 292 QRDEMGYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYI+            +DI++ D VLV++AG++IP+V+++I  ER  D   F  
Sbjct: 352 ATLHNEDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C    +R          AA +C    +C AQ    + HFVSRDA NI+GLG+  
Sbjct: 401 PEKCPVCSEPTIRLEGE------AAVKCINM-SCPAQIRRGIIHFVSRDAMNIDGLGESI 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +      +     I+  +D++ +++           +   G+ S  NL +SI K +   L
Sbjct: 454 ITLLLNEK----IIQDVSDLYYIKKEDVVD------LERMGEKSADNLINSIEKSKENDL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R I  LGI+ +G + A+ LA  +          +            L  +   G I+A 
Sbjct: 504 WRLINGLGIKFIGVKAAKILAYNFKDLDEVISATS----------EQLEELEEFGSIMAN 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           ++VEF++  +N+  +  L        S+    + V    E  K+V TGTL  ++R+ A++
Sbjct: 554 SVVEFFKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKD 613

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + + G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL LL+
Sbjct: 614 MIEKRGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEERFLELLK 664


>gi|299783520|gb|ADJ41518.1| DNA ligase, NAD-dependent [Lactobacillus fermentum CECT 5716]
          Length = 679

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 243/726 (33%), Positives = 393/726 (54%), Gaps = 51/726 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K++   +  L+ +QA+ EL+ L +++      YY+   P + D  YD   +R   I  
Sbjct: 1   MSKQE--AVSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQ 58

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FPDL     P+ P  ++GG     L KVTH IP LS+  ++++ +L  F  R       
Sbjct: 59  RFPDLVV---PDSPTQRVGGAAESQLNKVTHEIPMLSMGDVFSLAELADFNRRQQD--NS 113

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                  + LE KIDG  +++ YE G+ V  + RG+G  GEDV+  ++ I +IP+VL   
Sbjct: 114 DVKVDFDYNLELKIDGLSLSLVYENGRLVQGSTRGNGTIGEDVTENVKTIKSIPQVLPEP 173

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +   +E RGE Y+ K  F+ LN+   A G+  +ANPRNAA+G LR+L+P     R L+ F
Sbjct: 174 LS--LEFRGECYMPKEAFVKLNERREAEGQPVFANPRNAAAGSLRQLDPKVTAARQLDTF 231

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ +     +    Q + L+KMR LGF VN   R  ++   + +Y  E    R  LPY I
Sbjct: 232 MYYVPDYQALGVTTQAQALEKMRALGFAVNPNYRVVHSQAELTAYIEEYTEKRDQLPYGI 291

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV++ + Q  LG   + PRW I++KF  ++ +T + DI+  +GRTG +TP A ++
Sbjct: 292 DGIVEKVNDLATQVALGNTVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMD 351

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  ++ A+LHN DY+             +DIR+GD VL+ +AG++IP++  +I+ 
Sbjct: 352 PVQLAGTTVSRASLHNPDYL-----------AEKDIRLGDTVLLHKAGDIIPEISRVIIE 400

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  D++P+  P+ CP C + +V   +        A RC   + C AQ  E L HF SR+
Sbjct: 401 KRPADSKPYEVPTTCPECGADLVHLDDE------VALRCVNPM-CPAQIKEGLAHFASRN 453

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NI+GLG + ++  +        ++  AD++ L+  Q  +      +  FG+ S++NL 
Sbjct: 454 AMNIDGLGPKIIEQLWDK----GMVKDVADLYRLEAAQLLT------LPKFGEKSISNLL 503

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R+ S ER +F LGIRHVGA++A+ LA  + S                 D  ++ 
Sbjct: 504 TAIANSRHNSCERLLFGLGIRHVGAKVAQLLAAEFKSVDALMAA----------DAATIS 553

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTG 656
            V  +G II  A+  ++QN +    +  L +                S+E   K++V TG
Sbjct: 554 AVDSIGPIIGDAVATYFQNEQVHQLIAELKEVGVNMDYLAPTTSATESAEWAGKRVVLTG 613

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L K+ R +AQE+++  GA V+  +S+KTD++I G+  GSKLEKAQ LG+++ +E++F  
Sbjct: 614 KLTKMTRGQAQEWLSARGASVTGSVSKKTDLLIAGEKAGSKLEKAQTLGIEVWDEDRFDQ 673

Query: 717 LLQQYN 722
            +++ N
Sbjct: 674 AMKEEN 679


>gi|265764018|ref|ZP_06092586.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_16]
 gi|263256626|gb|EEZ27972.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_16]
          Length = 665

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 221/706 (31%), Positives = 347/706 (49%), Gaps = 48/706 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L  ++  H+  YY  + P I D E+D L R    +    P+     D N P  
Sbjct: 3   VKEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEYK---DENSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +      +       E K DG
Sbjct: 60  RVGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRVRKAL----NEDFEICCEMKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195
           T I++ YE GK + A  RGDG  G+DV+  ++ I +IP +L   N PE+ E+RGE+ +  
Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLILHGDNYPEVFEIRGEILMPW 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
             F  LN E  A     +ANPRNAASG L+  N   +                +   G Y
Sbjct: 176 EVFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPTDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ+    GF ++  +R+  T   +  + N     R  L    DG+V KV+    Q+ L
Sbjct: 236 ENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+GL           D+ +GD V V++ GE+IPK+  +  + R    +   F + CP
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSARFMIGEKVKFITHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F+
Sbjct: 405 ECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I   AD++ L             +   GD S  N+   I + + +  ER IF
Sbjct: 459 R----LGLIHDTADLYQLTTDDIRG------LDRMGDKSAENIIKGIMQSKEVPFERVIF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ +AK +   +               D  +LI +  +G+ IA++I+ +
Sbjct: 509 ALGIRFVGETVAKKIAKSFKDIEELENA----------DLETLINIDEIGEKIARSILNY 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           + N  N   V  L           E       ++  + +V +G      R + ++ + + 
Sbjct: 559 FANESNRKLVGRLKTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTYHSRDEYKDLIEKH 618

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           G      +S KT  I+ GDN G +KLEKA +LG+KIMNEE+FL L+
Sbjct: 619 GGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664


>gi|307293327|ref|ZP_07573173.1| DNA ligase, NAD-dependent [Sphingobium chlorophenolicum L-1]
 gi|306881393|gb|EFN12609.1| DNA ligase, NAD-dependent [Sphingobium chlorophenolicum L-1]
          Length = 711

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 279/739 (37%), Positives = 416/739 (56%), Gaps = 56/739 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +     ++  +A   L  L +EI+ H+  Y+   +P I D+ YDAL R  +A+  AFP L
Sbjct: 1   MTDPTPMTEAEAANRLMRLAREIARHNRLYHDQDQPEITDAAYDALIRENNALEAAFPHL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            RS   + P  ++G     +L KV H++  +SL+  +  ED+ +FI R+ RF    +D  
Sbjct: 61  IRS---DSPNAQVGAAPTSALKKVQHAVRMMSLDNGFADEDIAEFIARVRRFLALPEDAP 117

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184
           +  T EPKIDG   ++RYEKG+ V AA RGDG +GEDV+A +R I  IP+ L+   +P++
Sbjct: 118 VALTAEPKIDGLSCSLRYEKGELVLAATRGDGTTGEDVTANVRTIADIPQRLTGQAVPDL 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNPT-DITRYLNF 238
            EVRGEVY++K DF+ALN+ ++A    P     +ANPRNAA+G LR+ +     +R L F
Sbjct: 178 FEVRGEVYMAKADFVALNERLLAEAEDPEKARQFANPRNAAAGSLRQKDAAVTASRPLRF 237

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
             HG G+ S + A+ Q  ++Q +   G PV++ +   +T   ++++Y  +++ R+ LP+D
Sbjct: 238 LAHGWGEVSAVPAQTQLGVMQAIAGWGLPVSDRLACVDTLEALIAHYRAIEAARAELPFD 297

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD    Q++LG  A++PRW I+HKF  ++A T L  IDIQ+GRTG LTPV RL
Sbjct: 298 IDGVVYKVDRLDWQQRLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRL 357

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV +GG +++N TLHN D I  L            +R GDR++V+RAG+VIP+V  +  
Sbjct: 358 TPVTVGGVVVSNVTLHNADEIARL-----------GVRPGDRIVVQRAGDVIPQV--VDN 404

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             R     PF FP  CP+CQS  VR+            RCTGGL C+AQ+ ERL+HFVSR
Sbjct: 405 LTRDDPRSPFIFPDHCPVCQSEAVREEGE------VDIRCTGGLICAAQRFERLRHFVSR 458

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +IEGLG++ ++ F         I  PADIF L+  +      +    G+ + SV NL
Sbjct: 459 AALDIEGLGEKSIEEFLD----LGWIAEPADIFRLRTHRT----DLLGREGWKEKSVDNL 510

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN------ 592
             +I  +R     R +F LGIRH+GA  AR L K Y +          IIA  +      
Sbjct: 511 LAAIEAKRQPDAARLLFGLGIRHIGAVTARDLLKRYTTLPAIHGLAKEIIALRDAAAPAE 570

Query: 593 ------------DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
                             I V  VG  +  A+ +F+  P N+     LL EVSP     E
Sbjct: 571 GEEESRFRNRLDKAIAEQIGVENVGSAVGHALADFFHEPHNVEVWNDLLSEVSPPDYVVE 630

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
              +S +  K +VFTG L+ + R +A+    +LGA  +  +S KTD+++ G   GSKL++
Sbjct: 631 -TTASAVTGKTVVFTGKLETMSRDEAKAQAERLGAKAAGSVSAKTDLLVAGPGAGSKLKQ 689

Query: 701 AQQLGVKIMNEEQFLFLLQ 719
           A  LG+++++E  +  +++
Sbjct: 690 AAALGIEVIDEAAWAEIVK 708


>gi|255657267|ref|ZP_05402676.1| DNA ligase [Clostridium difficile QCD-23m63]
          Length = 674

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 222/707 (31%), Positives = 374/707 (52%), Gaps = 50/707 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             + E++ L + I+YH++ YY    P I D EYD L +   ++    P+L R    + P 
Sbjct: 2   SIKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRI---DSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           N++GG+      ++ H  P LSL   ++ +DLR F  R+  +  +    ++ + +E KID
Sbjct: 59  NRVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVEFKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y  G+F   A RGDG  GED+S  +  + +IP  L +N  + + VRGEVYISK
Sbjct: 115 GLSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
           ++F  +N++     +  +ANPRN A+G LR+L+P     R L+ FV  +    +   +  
Sbjct: 173 DNFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEDYDLESH 232

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            + L+ +  LGF V+   +   +   ++ +       R  L Y+IDG+V KV+    + +
Sbjct: 233 SDSLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLEYEIDGMVIKVNNIKQRDE 292

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           +G  A+SPRW I++KF  ++  T+++DI +++GRTG +TP A LEPV + G  ++ ATLH
Sbjct: 293 MGYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLH 352

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NEDYI+            +DI++ D VLV++AG++IP+V+++I  ER  D   F  P  C
Sbjct: 353 NEDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKC 401

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C    +R          AA +C    +C AQ    + HFVSRDA NI+GLG+  +   
Sbjct: 402 PVCSEPTIRLEGE------AAVKCINM-SCPAQIRRGIIHFVSRDAMNIDGLGESIITLL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              +     I+  +D++ +++           +   G+ S  NL +SI K +   L R I
Sbjct: 455 LNEK----IIQDVSDLYYIKKEDVV------ELERMGEKSADNLINSIEKSKENDLWRLI 504

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             LGI+ +G + A+ LA  +    +     +            L  +   G I+A ++VE
Sbjct: 505 NGLGIKFIGVKAAKILAYNFKDLDDVMSATS----------EQLEELEEFGSIMANSVVE 554

Query: 615 FYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           F++  +N+  +  L        S+    + V    E  K+V TGTL  ++R+ A++ + +
Sbjct: 555 FFKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKDMIEK 614

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL LL+
Sbjct: 615 RGGKATSSVSKSTTFVLAGEEAGSKLAKANDLGIKVIDEERFLELLK 661


>gi|189465636|ref|ZP_03014421.1| hypothetical protein BACINT_01996 [Bacteroides intestinalis DSM
           17393]
 gi|189437910|gb|EDV06895.1| hypothetical protein BACINT_01996 [Bacteroides intestinalis DSM
           17393]
          Length = 665

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 227/707 (32%), Positives = 362/707 (51%), Gaps = 50/707 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A++++  L  E+  H+  YY  + P I D E+D + R    +    P+    +D   P  
Sbjct: 3   AKEKIDQLRAELHRHNYNYYVLNAPEISDKEFDDMMRELQEMEREHPEY---QDETSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +VTH  P LSL   ++  ++  F  R  +      +       E K DG
Sbjct: 60  RVGSDLNKNFTQVTHKYPMLSLGNTYSEGEVSDFYDRTQKAL----NEDFEICAELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE GK + A  RGDG  G+DV+  ++ I TIP VL  + P++ E+RGE+ +   
Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGDYPQLFEIRGEILMPWK 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F  LN E  A     +ANPRNAASG L+  N   +               E+   G YE
Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGEELPCDGHYE 235

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQK    GF +++ +++ ++   +  Y +   + R  LP   DG+V KV+    QK LG
Sbjct: 236 NLQKAAQWGFKISDHMKKCHSLQEVFDYIHYWDTERKNLPVATDGIVLKVNSLKQQKNLG 295

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN 
Sbjct: 296 FTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHNA 355

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFCP 435
           D I+GL           D+ VGD V V++ GE+IPK+  +  + R     +   F + CP
Sbjct: 356 DIIEGL-----------DLHVGDMVYVEKGGEIIPKITGVDKDARSMMVGEKVKFITHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F+
Sbjct: 405 ECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I+   D++ L      +      +   GD S  N+   I + R +  ER +F
Sbjct: 459 R----LGLIKDTTDLYKLTVDDIKN------LDRMGDKSAENIVKGIAQSREVPFERALF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ +AK +   +               D   LI +  +G+ IAQ+I+ +
Sbjct: 509 ALGIRFVGETVAKKIAKSFTDIEELENA----------DLERLINIDEIGEKIAQSIISY 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           + NP N   +E L K       R E+++S    ++  + +V +G      R + ++ + +
Sbjct: 559 FANPLNRELIERL-KIAGLQFSRKEEDLSGYTDKLVGQSIVISGVFTHHSRDEYKDLIEK 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G      +S KT  I+ G+N G +KLEKAQ+LGV+IM+E++FL L+
Sbjct: 618 NGGKNVGSISAKTSFILAGENMGPAKLEKAQKLGVQIMSEDEFLALI 664


>gi|184155951|ref|YP_001844291.1| NAD-dependent DNA ligase [Lactobacillus fermentum IFO 3956]
 gi|254781353|sp|B2GDS9|DNLJ_LACF3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|183227295|dbj|BAG27811.1| NAD-dependent DNA ligase [Lactobacillus fermentum IFO 3956]
          Length = 679

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 243/726 (33%), Positives = 393/726 (54%), Gaps = 51/726 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K++   +  L+ +QA+ EL+ L +++      YY+   P + D  YD   +R   I  
Sbjct: 1   MSKQE--AVSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQ 58

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FPDL     P+ P  ++GG     L KVTH IP LS+  ++++ +L  F  R       
Sbjct: 59  RFPDLVV---PDSPTQRVGGAAESQLNKVTHEIPMLSMGDVFSLAELADFNRRQQD--NS 113

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                  + LE KIDG  +++ YE G+ V  + RG+G  GEDV+  ++ I +IP+VL   
Sbjct: 114 DVKVDFDYNLELKIDGLSLSLVYENGRLVQGSTRGNGTIGEDVTENVKTIKSIPQVLPEP 173

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +   +E RGE Y+ K  F+ LN+   A G+  +ANPRNAA+G LR+L+P     R L+ F
Sbjct: 174 LS--LEFRGECYMPKEAFVKLNERREAEGQPVFANPRNAAAGSLRQLDPKVTAARQLDTF 231

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ +     +    Q + L+KMR LGF VN   R  ++   + +Y  E    R  LPY I
Sbjct: 232 MYYVPDYQALGVTTQAQALEKMRALGFAVNPNYRVVHSQAELTAYIEEYTKKRDQLPYGI 291

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV++ + Q  LG   + PRW I++KF  ++ +T + DI+  +GRTG +TP A ++
Sbjct: 292 DGIVEKVNDLATQVALGNTVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMD 351

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  ++ A+LHN DY+             +DIR+GD VL+ +AG++IP++  +I+ 
Sbjct: 352 PVQLAGTTVSRASLHNPDYL-----------VEKDIRLGDTVLLHKAGDIIPEISRVIIE 400

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  D++P+  P+ CP C + +V   +        A RC   + C AQ  E L HF SR+
Sbjct: 401 KRPADSKPYEVPTTCPECGADLVHLDDE------VALRCVNPM-CPAQIKEGLAHFASRN 453

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NI+GLG + ++  +        ++  AD++ L+  Q  +      +  FG+ S++NL 
Sbjct: 454 AMNIDGLGPKIIEQLWDK----GMVKDVADLYRLEAAQLLT------LPKFGEKSISNLL 503

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R+ S ER +F LGIRHVGA++A+ LA  + S                 D  ++ 
Sbjct: 504 TAIANSRHNSCERLLFGLGIRHVGAKVAQLLAAEFKSVDALMAA----------DAATIS 553

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTG 656
            V  +G II  A+  ++QN +    +  L +                S+E   K++V TG
Sbjct: 554 AVDSIGPIIGDAVATYFQNEQVHQLIAELKEVGVNMDYLAPTTSATESAEWAGKRVVLTG 613

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L K+ R +AQE+++  GA V+  +S+KTD++I G+  GSKLEKAQ LG+++ +E++F  
Sbjct: 614 KLTKMTRGQAQEWLSARGASVTGSVSKKTDLLIAGEKAGSKLEKAQTLGIEVWDEDRFDQ 673

Query: 717 LLQQYN 722
            +++ N
Sbjct: 674 AMKEEN 679


>gi|154685157|ref|YP_001420318.1| NAD-dependent DNA ligase LigA [Bacillus amyloliquefaciens FZB42]
 gi|166215394|sp|A7Z261|DNLJ_BACA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|154351008|gb|ABS73087.1| LigA [Bacillus amyloliquefaciens FZB42]
          Length = 669

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 245/715 (34%), Positives = 397/715 (55%), Gaps = 53/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E A+     L + I  +   YY   +P + DSEYD L +   AI    P+L     P
Sbjct: 2   MDKETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPEL---RTP 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  S  KV H  P LSL   +N +D    +    R  ++   + + + +E
Sbjct: 59  DSPTQRVGGAVLESFQKVQHGTPMLSLGNAFNDDD----LRDFDRRVRQAVGDGVAYNVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++RYE G FV  A RGDG +GED++  ++ I  IP  +       IEVRGE 
Sbjct: 115 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKM--KRNLSIEVRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+ K  F ALN+E +    +P+ANPRNAA+G LR+L+P     R L+ FV+ + +  E+ 
Sbjct: 173 YMPKQSFEALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMG 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q + L  +  LGF  N   ++  T   ++    E+++ R+ LPY+IDG+V KVD   
Sbjct: 233 VETQSQGLDFLDELGFKTNQERKKCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLD 292

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ 
Sbjct: 293 QQEELGYTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSR 352

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED IK            +DIR+ D+V+VK+AG++IP+VV++++ +R  + + F+ 
Sbjct: 353 ASLHNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNM 401

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG++ 
Sbjct: 402 PTGCPECESELVRIEGE------VALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERV 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       +R  AD++ L + Q         +   G+ S  NL  SI K +  SL
Sbjct: 455 ITQLFRE----HLVRNVADLYKLTKEQVI------RLERMGEKSTDNLISSIQKSKENSL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIR +G++ A++LA ++ S +N  Q               L+ V  +G+ +A 
Sbjct: 505 ERLLFGLGIRFIGSKAAKTLAMHFESLENLKQVTE----------EELLAVDEIGEKMAD 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A++ +++    +  +  L +    ++ +       ++  S    K +V TG L+++ R++
Sbjct: 555 AVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A+  +  LG  ++  +S+KTD++I G+  GSKL KAQ+L +++ NE Q L  L++
Sbjct: 615 AKAQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWNEAQLLGELKK 669


>gi|298492390|ref|YP_003722567.1| DNA ligase, NAD-dependent ['Nostoc azollae' 0708]
 gi|298234308|gb|ADI65444.1| DNA ligase, NAD-dependent ['Nostoc azollae' 0708]
          Length = 684

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 225/723 (31%), Positives = 366/723 (50%), Gaps = 55/723 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  ++ E   + +  L   +      YY    P++ D  YD L R    +   +P L   
Sbjct: 1   MMQMTSE--AQLVRELRLLLQQASYAYYVLDAPVMEDMVYDRLYRELQELETQYPYLV-- 56

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-SIF 127
             P+ P  ++G         V H+IP  SLE  +N+E+L+ +  R  R    +     + 
Sbjct: 57  -TPDSPTQRVGERPATHFTSVRHNIPLYSLENAFNVEELQGWDQRWRRHLMAQYYPVEVD 115

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEI 184
           +  E KIDG  + + Y+ G  V  A RGDG  GED++  +R I +IP  L+ +     E 
Sbjct: 116 YVAELKIDGAALALTYQNGILVRGATRGDGVMGEDITQNVRTIRSIPLRLNFDGLENIEK 175

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL 243
           +EVRGEV++    F  +N++    G + +ANPRNA +G LR+L+      R L+FF + +
Sbjct: 176 VEVRGEVFLPLEVFKQINEKRQKAGEQLFANPRNAVAGTLRQLDSRIVAQRQLDFFAYTV 235

Query: 244 ---GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
              G      A  Q+E L+ ++ LGF V+   R  ++   +  YY    + R   PY  D
Sbjct: 236 HIPGMDDASIANTQWEALELLQRLGFRVDTNHRLCHSIREVAEYYEYWDTERLNSPYMTD 295

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K++ F LQ+QLG   + PRW I+ K+A +QA TR+ +I I +GRTG LTP+A + P
Sbjct: 296 GVVVKLNTFKLQEQLGFTQKFPRWAIALKYAAEQAPTRVNNITINVGRTGALTPLAEMRP 355

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G  ++ ATLHN D I+ L           DIR+GD V+V++AG++IP+VV +I   
Sbjct: 356 VQLAGTTVSRATLHNSDRIQQL-----------DIRIGDTVIVRKAGDIIPEVVRVIKEL 404

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  D  PF  PS CPIC   VVR+         A  RC    +C+A     ++H+VSRDA
Sbjct: 405 RPSDTAPFIMPSHCPICGQPVVRESGE------AVTRCVSA-SCAAILKGEIEHWVSRDA 457

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I+G+G++ +      E     +   +D++ L + +  +      +   G  S   L +
Sbjct: 458 LDIKGMGEKLVHQLVDKE----LVLSVSDLYKLIKEELCA------LERMGQKSAQKLVN 507

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I + +N    R ++ LGIRHVG+  A+ L + + + +  A    +           +  
Sbjct: 508 AIAQSKNQPWSRVLYGLGIRHVGSVNAQLLTEKFTTVEQLAAAKQS----------DIEG 557

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN----VSSEIENKKLVFTG 656
           V  +G  IAQ++ ++++ P N   +  L           E      ++  +  K  V TG
Sbjct: 558 VYGIGAEIAQSVYQWFRTPANQTLISRLQDIGLQLANTAETKPVGEINPNLAGKIFVVTG 617

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +A+  + + G  V+  +SRKTD ++VG + G K++KAQ LG+  + E Q L 
Sbjct: 618 TLPTLKRDEAKVLIQKAGGKVTDSVSRKTDFLVVGADAGFKVKKAQSLGITQLTETQLLK 677

Query: 717 LLQ 719
           +L+
Sbjct: 678 MLE 680


>gi|237713195|ref|ZP_04543676.1| DNA ligase [Bacteroides sp. D1]
 gi|262406666|ref|ZP_06083215.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_22]
 gi|294643460|ref|ZP_06721274.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CC 2a]
 gi|294808131|ref|ZP_06766900.1| DNA ligase (NAD(+)) [Bacteroides xylanisolvens SD CC 1b]
 gi|229446662|gb|EEO52453.1| DNA ligase [Bacteroides sp. D1]
 gi|262355369|gb|EEZ04460.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_22]
 gi|292641208|gb|EFF59412.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CC 2a]
 gi|294444674|gb|EFG13372.1| DNA ligase (NAD(+)) [Bacteroides xylanisolvens SD CC 1b]
          Length = 666

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 226/709 (31%), Positives = 354/709 (49%), Gaps = 51/709 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+     D N P 
Sbjct: 2   DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEYK---DENSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N +  +V H  P LSL   ++  ++  F  R+ +      +       E K D
Sbjct: 59  MRVGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKAL----NEDFEICCEMKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           GT I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ + 
Sbjct: 115 GTSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
              F  LN E  A     +ANPRNAASG L+  N + +                +   G 
Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGDNLPCDGH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK 
Sbjct: 235 YENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKN 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A T L  +  Q+GRTG +TPVA L+PV + G ++  A+LH
Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTCLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-HPDAQPFSFPSF 433
           N D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F   
Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIVN 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S++VR          AAH C    AC  Q   +++HF+SR A NI+GLG + +D 
Sbjct: 404 CPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDM 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F++       I   AD++ L             +   G+ S  N+   I + + +  ER 
Sbjct: 458 FYR----LGLIENTADLYKLTVDDIKG------LDRMGEKSAENIVTGIAQSKTVPFERV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG  +A+ +AK + +  +  Q           D   L+ +  +G+ IAQ+I+
Sbjct: 508 IFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIAQSIL 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYV 670
            ++ N  N   V  L KE    + R E+++S    ++  + +V +G      R + +E +
Sbjct: 558 AYFANESNRELVNRL-KEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFIHHSRDEYKELI 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            + G      +S KT  I+ GDN G +KLEKA++LG+ I++E++FL L+
Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665


>gi|300858287|ref|YP_003783270.1| DNA ligase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685741|gb|ADK28663.1| DNA ligase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206007|gb|ADL10349.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis
           C231]
 gi|302330560|gb|ADL20754.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis
           1002]
 gi|308276242|gb|ADO26141.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis
           I19]
          Length = 694

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 215/711 (30%), Positives = 348/711 (48%), Gaps = 50/711 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R++   L +++ YH D YY    P I D ++DAL R    +    P+LA    P+ P 
Sbjct: 23  ELRRQWDELAEQVRYHRDAYYN-DTPEISDQDFDALFRTLQKLEEEHPELAV---PDSPT 78

Query: 76  NKIGGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
            ++G  +  + S   V H    +SL+ +++  +L +++ R           +  +  E K
Sbjct: 79  LEVGAPVALSSSFNNVEHLERLMSLDNVFDAAELSEWLQRT---------PAQAYLTELK 129

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRG 189
           IDG  + + Y  GK   AA RGDG  GEDV+   + I  +P  L       IPE++EVRG
Sbjct: 130 IDGLSLDLIYRDGKLWRAATRGDGRIGEDVTENAKVIADVPHRLKENAEFPIPELLEVRG 189

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248
           EV+I+  DF A+N++    G KP+ANPRNAA+G LR+ +      R L    HGLG T  
Sbjct: 190 EVFIAVEDFAAVNEQRQLEGGKPFANPRNAAAGSLRQKDVEAVKKRRLRMICHGLGATQG 249

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                QY   + +   G PV+       +   +          R    +++DG+V KVD 
Sbjct: 250 FTPASQYHAYEALAAWGLPVSPYTELVQSAAEVQEKVLYWAEHRHDAAHEMDGVVVKVDS 309

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            S Q+ LG  AR+PRW I++K+  ++ +T LLDI + +GRTG +TP A + PV + G+ +
Sbjct: 310 ISEQRALGATARAPRWAIAYKYPPEEVTTELLDIQVGVGRTGRVTPFAVMRPVFVAGSTV 369

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN+  +K            + + +GD V++++AGEVIP+V+  +V +R    + F
Sbjct: 370 SMATLHNQTEVKR-----------KGVLIGDTVVIRKAGEVIPEVLGPVVEKRDGTEREF 418

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CP C +R+         +  A  RC    +C AQ   RL +   R AF+IE LG+
Sbjct: 419 IFPTLCPSCGTRLA-----PQKEDDADWRCPNSQSCPAQLSTRLTYLAGRGAFDIEALGE 473

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +  +   ++      +   A +F L       T          + + + L  ++ + +  
Sbjct: 474 KAAEDLIRT----GVLIDEAGLFELTEEDLLKTRVYTTKKKTLNATGSKLLANLEQSKKA 529

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L R + +L IRHVG   AR+LA  Y S     +               +     VG II
Sbjct: 530 DLWRVLVALSIRHVGPTAARALASRYHSMDALREA----------SAEEIADTEGVGAII 579

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           AQ+  ++++   +   VE   +          +     +    +V TG+L+   R  A+E
Sbjct: 580 AQSFKDWFEVDWHAHIVEQWARAGVTMAEETSQLPEQTLAGMTVVVTGSLEGFSRDSAKE 639

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +   G   S  +S+KTD ++VG+N GSK  KA++LG+ I++E  F+ LL+
Sbjct: 640 AIISRGGKASTSVSKKTDYVVVGENAGSKETKARELGLTILDESGFIRLLE 690


>gi|94497003|ref|ZP_01303577.1| DNA ligase, NAD-dependent [Sphingomonas sp. SKA58]
 gi|94423679|gb|EAT08706.1| DNA ligase, NAD-dependent [Sphingomonas sp. SKA58]
          Length = 703

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 278/731 (38%), Positives = 415/731 (56%), Gaps = 48/731 (6%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +     L+  +A   L  L +E++ H+  Y+    P I D++YDAL R  +A+  AFP L
Sbjct: 1   MTDPAMLTEAEAANRLMRLAKEVAKHNRLYHDQDAPEISDADYDALIRENNALEAAFPHL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            R+   + P  ++G     +L KV H++  +SL+  ++ ED+  F+ RI RF    DD  
Sbjct: 61  IRA---DSPNAQVGAASTTALKKVPHAVRMMSLDNGFSDEDIADFLARIRRFLALPDDAP 117

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184
           +  T EPKIDG   ++RYEKG+ V AA RGDG +GEDV+A +  I  IP+ L+   IP++
Sbjct: 118 VALTAEPKIDGLSCSLRYEKGELVLAATRGDGTTGEDVTANVHTIADIPQRLTGEAIPDL 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNPT-DITRYLNF 238
            E+RGEVY++K DF+ALN  ++A    P     +ANPRNAA+G LR+ + T   +R L F
Sbjct: 178 FEIRGEVYMAKGDFVALNARLLAEAENPEKARQFANPRNAAAGSLRQKDATVTASRPLRF 237

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
             HG G  S + A  Q  ++Q +   G PV++ +   ++   ++++Y  +++ R+ LP+D
Sbjct: 238 LAHGWGAHSALPADTQLGVMQAIAGWGLPVSDMLACVDSLDALIAHYRTIEAGRADLPFD 297

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD    Q++LG  A++PRW I+HKF  ++A T L  IDIQ+GRTG LTPV RL
Sbjct: 298 IDGVVYKVDRLDWQQRLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRL 357

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV +GG +++N TLHN D I  L            +R GDR++V+RAG+VIP+V  +  
Sbjct: 358 TPVTVGGVVVSNVTLHNADEIARL-----------GVRPGDRIIVQRAGDVIPQV--VDN 404

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             R    +PF FP+ CP+C S  VR+            RCTGGL C AQ+ ERL+HFVSR
Sbjct: 405 LTRDEAREPFPFPTHCPVCGSEAVREEGE------VDVRCTGGLICPAQRFERLRHFVSR 458

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +IEGLG++ +  F         I  PADIF L++ +      +    G+ + SV NL
Sbjct: 459 AALDIEGLGEKTIQEFLD----LGWIAEPADIFRLKKHRA----DLLGREGWKEKSVDNL 510

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN------- 591
             +I  +R     R +F LGIRHVGA  AR L K Y +         +I+A         
Sbjct: 511 LMAIEAKRQPDAARLLFGLGIRHVGAVTARDLLKRYATLPAIRALAQDIMALRDQPHDSQ 570

Query: 592 ---NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
              +      I V  VG  +  A+  F+  P N+ A + LL EVSP     E  V S + 
Sbjct: 571 AKMDKAIAEHIGVDNVGVAVGHALAHFFHEPHNVEAWDDLLSEVSPPPYVVETTV-SAVT 629

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +VFTG L+ + R +A+    ++GA  +  +S KTD+++ G   GSKL++A  LG+++
Sbjct: 630 GKTVVFTGKLETMSRDEAKAQAERMGAKAAGSVSAKTDLVVAGPGAGSKLKQATVLGIEV 689

Query: 709 MNEEQFLFLLQ 719
           + E+ +  +++
Sbjct: 690 ITEQAWADIVK 700


>gi|294631529|ref|ZP_06710089.1| DNA ligase, NAD-dependent [Streptomyces sp. e14]
 gi|292834862|gb|EFF93211.1| DNA ligase, NAD-dependent [Streptomyces sp. e14]
          Length = 732

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 224/737 (30%), Positives = 348/737 (47%), Gaps = 62/737 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR+E + L +++  H   YY    P+I D+++D L R  +A+   +P+L     P+ 
Sbjct: 2   PAEAREEHARLAEQVEEHRFRYYVKDAPVISDADFDRLLRSLEALEERYPEL---RTPDS 58

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G        V H    LSL+  +N EDL  ++ RI R   +       F  E K
Sbjct: 59  PTQKVAGSYETEFTAVEHRERMLSLDNTFNDEDLAAWVDRIARELGE---QEYHFLCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG +GED++  +R I  IP  L+ +  P+++E+RGEVY
Sbjct: 116 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLNGDKVPDLVEIRGEVY 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
                F  LN  ++A G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G       
Sbjct: 176 FPMAGFEELNARLVAAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGALEGYEG 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E    +   G P +   R  +   GI  +       R ++ ++IDG+V K+DE  
Sbjct: 236 LTRLSEAYDLLSTWGLPTSPHNRVVDGLDGIRDFIAYYGEHRHSVEHEIDGVVVKLDEIR 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  AR+PRW I++K+A ++ +T+LL+I + +GRTG +TP A++EPV + G+ +  
Sbjct: 296 LQGRLGSTARAPRWAIAYKYAPEEVNTKLLNIRVGVGRTGRVTPYAQVEPVTVAGSEVEF 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+D +K            + + +GD V++++AG+VIP+++  + + R    + F  
Sbjct: 356 ATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVM 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C + +         +     RC     C AQ  ERL +   R A +IE  G   
Sbjct: 405 PGECPECGTPLRPM-----KEGDVDLRCPNARTCPAQLRERLFYLAGRKALDIEHFGYVA 459

Query: 491 LDFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI------------------------E 525
                K  +PA   +R   D+F L   Q                                
Sbjct: 460 AAALTKPLEPAEPPLRDEGDLFDLTVEQLLPIKAYVLDQDSGLPKRDPKTGEEKIATVFA 519

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
           N  G    +   + ++I   +   L R +  L IRHVG   A +LA+ + S     Q   
Sbjct: 520 NQQGEPKKNALAMLENIAAAKQRPLARVLTGLSIRHVGPVAAEALAREFRSIDRIEQASE 579

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS- 644
                       L     VG IIA ++ E++    +   +                    
Sbjct: 580 ----------EELANTEGVGQIIAASLKEWFAEEWHQEIIRKWRAAGVRMEEEGPGEDEG 629

Query: 645 -SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              +E   +V TGTL+   R  A+  +   GA V+  +S+KT  ++VGDNPGSK +KA Q
Sbjct: 630 PRPLEGLTVVVTGTLEHFTRDGAKAALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQ 689

Query: 704 LGVKIMNEEQFLFLLQQ 720
           L V +++E  F  LL Q
Sbjct: 690 LKVPVLDETGFGVLLDQ 706


>gi|182411830|ref|YP_001816896.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1]
 gi|254778148|sp|B1ZWH2|DNLJ1_OPITP RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|177839044|gb|ACB73296.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1]
          Length = 675

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 224/714 (31%), Positives = 361/714 (50%), Gaps = 49/714 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++  +A+  ++ L  +++ HD+ Y++ ++P I D EYDALKR    +  A+P  AR    
Sbjct: 1   MTPVEAQSRIAELRAQVARHDELYHRRAQPQIGDFEYDALKRELAELEAAWPQFARGA-- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++G +         H    +SL+  ++  +LR+F  R+ R  ++     + F +E
Sbjct: 59  -SPTEQVGDDRTEGFQVYRHRERMMSLDNTYSETELREFHDRLVRELERDG---LKFVIE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEV 187
           PKIDG  ++I YEKGK V A  RG+G  G+D++     I ++PR L        P +IE+
Sbjct: 115 PKIDGLAVSITYEKGKLVRAVTRGNGIEGDDITTNALTIKSLPRELKRADGVPLPAVIEI 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT 246
           RGEV+++  +FL +N +    G   YANPRN A+G +++L+P +   R L   ++G G  
Sbjct: 175 RGEVFLTTEEFLRINRQREEAGEPLYANPRNLAAGTIKQLDPREVAQRKLEVVLYGRGYV 234

Query: 247 SEIF--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                  + Q +    ++  G P       A     I +   E+ ++R T  Y  DG V 
Sbjct: 235 EPASALPETQAQFHGWVKAWGLPTVERFWTATGADEIWAAVQELDALRDTFAYATDGAVV 294

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+D   LQ++ G  ++SPRW +++KFA  +A T+L  I +Q+GRTG+LTPVA L+PV + 
Sbjct: 295 KLDAVPLQRRAGSTSKSPRWAMAYKFAPDRAETQLRAITVQVGRTGVLTPVAELDPVQLA 354

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ ATLHN D I             +DIRVGD V V++AGE+IP V+ +    R P+
Sbjct: 355 GTTVSRATLHNRDEIAR-----------KDIRVGDFVYVEKAGEIIPAVIGVNPARRAPE 403

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
             P+ FP  CP C + VV+       +           +C  Q   R++HF S+   +IE
Sbjct: 404 CVPYVFPEKCPECGTAVVQLEGEVAVR-------CPNFSCPVQVRRRVQHFASKACVDIE 456

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+  +D   +       +    DI+ L+R    +  K        + S   L ++I  
Sbjct: 457 GMGEAMVDVLVEK----GWVHSVPDIYQLKRENLLTLGKS------VEKSTDKLLEAIEA 506

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +   L RFI  LGI H GA  A+ LA+ +   +  A                   +  +
Sbjct: 507 SKRAELWRFIHGLGIPHAGAAAAKDLARTFGGLERLASARYEDFIREKASV-----IGGI 561

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G+ +A AI+ ++  PRN   V+ L++     +     N  S +  K  V TGTL  + R 
Sbjct: 562 GETMALAILAYFAEPRNRAVVDELVRVGVQPVVP---NSGSALAGKTFVLTGTLPTLTRD 618

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A   +   G  VS+ +S+KT  ++ G+  GSKLEKA+ L V +++E +FL LL
Sbjct: 619 EATAQIEAAGGKVSSGVSKKTSYVLAGEEAGSKLEKARALAVPVIDEAEFLRLL 672


>gi|291299865|ref|YP_003511143.1| DNA ligase NAD-dependent [Stackebrandtia nassauensis DSM 44728]
 gi|290569085|gb|ADD42050.1| DNA ligase, NAD-dependent [Stackebrandtia nassauensis DSM 44728]
          Length = 749

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 224/769 (29%), Positives = 352/769 (45%), Gaps = 84/769 (10%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
             + AR+  + L  EI  H   Y++   P I D+EYDAL R   AI  A P LA     +
Sbjct: 14  DFDAARERHTKLAAEIDRHRQLYHRDDAPQISDAEYDALMRELLAIEEAHPVLATQ---D 70

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG+++     V H+    SL+  ++ E+L  ++ R+       +     +  E 
Sbjct: 71  SPSQQVGGDVSELFASVRHAERLYSLDNAFSPEELTAWVERVT-----AEVPGEAYLCEL 125

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVR 188
           KIDG  + + YE G  V  A RGDG +GED++  +R I +IP  L       +PE +E+R
Sbjct: 126 KIDGLAVNLTYENGVLVRGATRGDGTTGEDITPNVRTIASIPEKLKGTKKYPVPEFVEIR 185

Query: 189 GEVYISKNDFLALNDEMIAVGRKP--------------------YANPRNAASGILRRLN 228
           GEV++S   F  LN + +A   +                     YANPRNAA+G LR+ +
Sbjct: 186 GEVFMSTESFEKLNADRLAENERITAANEERKAEGKRLQKLLPLYANPRNAAAGSLRQKD 245

Query: 229 PT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE 287
           PT   +R L+  V+G G         Q +    ++  G P ++  +  +T  G+  Y   
Sbjct: 246 PTITASRALSMTVYGFGARRGFEPTHQSQGYAALKAWGLPTSSYFKVLDTVEGVTEYIEH 305

Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347
               R  + ++IDG+V K+D+ ++Q++LG   R+PRW I++K+  ++ +T L DI + +G
Sbjct: 306 YGEHRHDIEHEIDGVVIKIDDIAVQRRLGSTTRAPRWAIAYKYPPEEVTTTLRDIKVSVG 365

Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407
           RTG  TP A LEPV + G+ +  ATLHN+D +K            + + +GDRV++++AG
Sbjct: 366 RTGRATPYAVLEPVRVAGSEVEFATLHNQDIVK-----------AKGVLIGDRVIIRKAG 414

Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
           +VIP+V+  +   R  D   F  PS CP C + + +       +     RC    +C AQ
Sbjct: 415 DVIPEVLGPVEGARTGDEHEFVMPSNCPECGTELRQM-----SEGDIDLRCPNARSCPAQ 469

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA-FSIRIPADIFTLQRRQ--------- 517
             ERL +   R   +I+GLG        +  +P    +    D+F L   Q         
Sbjct: 470 LRERLSYLTGRSCLDIDGLGYVACTALVQPLEPKQPPLADEGDLFNLTMEQLLPIKSLVL 529

Query: 518 ---------------QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
                              T      G      T + + I   +   L R I  L IRHV
Sbjct: 530 DPDSGLPKKDPKTGKDKEVTYFATQDGAPKAGATKMLEGIEAAKQQELWRIINGLSIRHV 589

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G   AR+LA  +                   D   L  V  VG  IA A+ +++    ++
Sbjct: 590 GPVAARALATEFGDLDAIRDA----------DEERLAAVDGVGPTIATAVKQWFAEDWHV 639

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             +E         +    +     +    +V TG+L+   R  A E V   G  VS  +S
Sbjct: 640 EILEKWRAAGVRFVEERPEAGERHLAGLTVVITGSLEGWTRDGAAEAVRVRGGKVSGSVS 699

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
           +KT  ++VGD+PGSK +KA +LGV I++ E F  LL +    +R  + D
Sbjct: 700 KKTSFVVVGDSPGSKYDKAVKLGVPILDTEGFATLLSEGPDAVRPIEAD 748


>gi|255691906|ref|ZP_05415581.1| DNA ligase, NAD-dependent [Bacteroides finegoldii DSM 17565]
 gi|260622459|gb|EEX45330.1| DNA ligase, NAD-dependent [Bacteroides finegoldii DSM 17565]
          Length = 666

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 228/709 (32%), Positives = 355/709 (50%), Gaps = 51/709 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +  +  L  E+  H+  YY  + P I D E+D   R    +  A P+     D N P 
Sbjct: 2   DIKGRIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEEAHPEYK---DENSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N +  +V H  P LSL   ++ E++  F  R+ +      +       E K D
Sbjct: 59  MRVGSDLNKNFTQVAHKYPMLSLANTYSEEEVTDFYERVRKAL----NEDFEICCEMKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           GT I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ + 
Sbjct: 115 GTSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
              F ALN E        +ANPRNAASG L+  N + +                +   G 
Sbjct: 175 WEVFEALNREKEVREEPLFANPRNAASGTLKLQNSSVVASRKLDAYLYYLLGENLPCDGH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ+    GF +++ +R+  T   +  + N     R  LP   DG+V KV+    QK 
Sbjct: 235 YENLQEAAKWGFKISDLMRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKN 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LH
Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-HPDAQPFSFPSF 433
           N D I+GL           D+ +GD V V++ GE+IPK+  + V+ R     +   F + 
Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDVDARSFMVGEKVRFITT 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S++VR          AAH C    AC  Q   +++HF+SR A +I+GLG + +D 
Sbjct: 404 CPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMDIDGLGPETVDM 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F++       I   AD++ L             +   G+ S  N+   I + + +  ER 
Sbjct: 458 FYR----LGLIHNTADLYKLTIDDIKG------LERMGEKSAENIVTGIAQSKTVPFERV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG  +A+ +AK + +     +           D   L+ +  +G+ IAQ+I+
Sbjct: 508 IFALGIRFVGETVAKKIAKSFENIDELKRA----------DLERLVSIDEIGEKIAQSIL 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYV 670
            ++ N  N   V  L KE      R E+++S    ++  + +V +G      R + +E +
Sbjct: 558 TYFANEANCELVNRL-KEAGLQFYRTEEDLSGYTDKLAGQSIVISGVFIHHSRDEYKELI 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            + G      +S KT  I+ GDN G +KLEKAQ+LG+ I++E++FL L+
Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKAQKLGITILSEDEFLKLI 665


>gi|149275978|ref|ZP_01882123.1| DNA ligase [Pedobacter sp. BAL39]
 gi|149233406|gb|EDM38780.1| DNA ligase [Pedobacter sp. BAL39]
          Length = 671

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 207/712 (29%), Positives = 365/712 (51%), Gaps = 46/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + + ++ +L +E++ H   YY  + P I D E+D      + +   +P+ A   DP
Sbjct: 1   MSKNEVKDKMDALVKELNQHTYDYYVLAMPTIADYEFDRKLAALNKLEQQYPEYA---DP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG++  +   V H  P LSL   +N +DLR F  R+ +       +   +  E
Sbjct: 58  NSPTQQVGGDITKNFTTVAHKWPMLSLGNTYNEQDLRDFDERVRKAIG----DQFQYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
            K DG  I++ YE  K + A  RGDG  G+DV+  ++ I  IP    S  IP + E+RGE
Sbjct: 114 LKFDGVSISLTYEDQKLLRAVTRGDGTKGDDVTTNVKTIRNIPHKLSSGTIPSLFEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           + + +  F  LN E   +G   YANPRN A+G ++  +  ++ +           T +  
Sbjct: 174 ILMHRAAFERLNKEREELGEVTYANPRNFAAGTVKMQDSREVAKRPLDCFLYYFNTDKSP 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K  +E L+ ++  GF V+   R  NT   ++ + +  +  R  L YDIDG+V KV+ ++
Sbjct: 234 FKTHWESLETLKSWGFHVSEHSRLGNTIEEVLEFISYWEKERFNLSYDIDGIVIKVNSYA 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  A+SPRW IS+K+  ++  T L  +  Q+GRTG +TPVA L+PV + G  +  
Sbjct: 294 QQAELGFTAKSPRWAISYKYKAQEVETILERVTYQVGRTGAVTPVANLKPVLLAGTTVKR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN + I+ L           D+  GD V V++ GE+IPK++++ +++R   A    +
Sbjct: 354 ATLHNANEIERL-----------DLHEGDSVFVEKGGEIIPKIINVNLDKRENGAVKIIY 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + ++R           A+ C    AC  Q + +++HF+ R A +I+GLG + 
Sbjct: 403 PTQCPECGTTLIRKEGE------VAYYCPNDEACPPQIVGKIQHFIGRKAMDIDGLGDET 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  ++       ++  +D++ L +R +    +++ I  FG+ S+ N+   I   + +  
Sbjct: 457 IETCYQH----GLLKHISDLYVLHQRTE----ELKAIDRFGERSIENMLKGIESSKQMPF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + +F LGIR+VG  +AR LA    +    A               +L  +  +G  IA+
Sbjct: 509 AKVLFGLGIRYVGETVARKLAVATKNIDTLATA----------SLETLTAIDEIGQRIAE 558

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +I+E++  P +I  +E L           +  +  S ++  K  V +G  +   R + +E
Sbjct: 559 SIIEYFAKPEHIQQIELLKSYGLQFESDEKEIELQSDKLTGKTFVISGVFENYSREELKE 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            +   G  + + +S K + ++ GDN G SKLEKA++L + ++++++ L LL 
Sbjct: 619 IIELNGGKILSSISAKLNFLVAGDNMGPSKLEKAKKLNIPLISQDELLALLN 670


>gi|313203539|ref|YP_004042196.1| DNA ligase, nad-dependent [Paludibacter propionicigenes WB4]
 gi|312442855|gb|ADQ79211.1| DNA ligase, NAD-dependent [Paludibacter propionicigenes WB4]
          Length = 676

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 219/705 (31%), Positives = 348/705 (49%), Gaps = 47/705 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            + ++ SL +E+  H+  YY  S P I D E+DA  R+   +  A P+     DPN P  
Sbjct: 2   IKDQIESLRRELEQHNYNYYVKSAPTISDFEFDAKLRQLQELEAAHPEFF---DPNSPTQ 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++     +V H  P LSL   ++  +++ F  R+ +      +       E K DG
Sbjct: 59  RVGSDIASGFEQVAHVYPMLSLGNTYSEGEVQDFYERVRKGL----NEDFELVCELKYDG 114

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE G  V A  RGDG  G+DV+A ++ I +IP  L  N P+  E+RGE+ +  +
Sbjct: 115 TSISLTYEDGVLVRAVTRGDGEKGDDVTANVKTIRSIPLRLQGNYPKSFEIRGEILMPWS 174

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F  LN E      + +ANPRNAASG L+  N + +                + +    E
Sbjct: 175 VFDDLNREREEQEEQLFANPRNAASGTLKLQNSSVVASRKLDAYLYYLLGENLPSDLHSE 234

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+     GF +++  +   T   + ++ N     R  LP   DG+V KV+  S Q+ LG
Sbjct: 235 NLEAAHSWGFKISDATKVCRTLDEVSAFINYWDVERKNLPVATDGIVLKVNSLSQQRALG 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G  +  A+LHN 
Sbjct: 295 FTAKSPRWAIAYKFQAEKAVTRLNSVSYQVGRTGAVTPVANLDPVQLSGTTVKRASLHNA 354

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           D+ +GD V V++ GE+IPK+  +  + R        F   CP 
Sbjct: 355 DIIEAL-----------DLHIGDMVFVEKGGEIIPKITAVDKDARLLIGDKVQFIKSCPE 403

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + +VR          AAH C    AC  Q   +++HFVSR A NI+GLG + ++  ++
Sbjct: 404 CGAALVRFEGE------AAHYCPNENACPPQIKGKMEHFVSRKAMNIDGLGSETINLLYQ 457

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     +   ADI+TL          +  +   G  S  N+ +   K + I  ER +F+
Sbjct: 458 ND----LLHNIADIYTL------KVPDLIRLERLGTKSAYNIKEGAEKSKEIPFERVVFA 507

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG  IA+ LA  + + +   Q            +  L+ V  +G  IAQ++V ++
Sbjct: 508 LGIRFVGETIAKKLAYAFKNIEALEQA----------SYDELVAVDEIGGRIAQSVVAYF 557

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            +  NI  +  L +         +K  +    +    +V +GT  K  R + +  + + G
Sbjct: 558 SDSLNIEMLNRLKEYGLQMSLSEDKLQAHGTALAGLSIVISGTFSKHSRDEYKTMIERNG 617

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
                 +S KT  I+ GDN G  KL+KA++LGVK++NE+ FL ++
Sbjct: 618 GKNVGSVSAKTSFILAGDNMGPEKLKKAEKLGVKLVNEDDFLSMI 662


>gi|328887795|emb|CAJ70206.2| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Clostridium
           difficile]
          Length = 674

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 225/707 (31%), Positives = 373/707 (52%), Gaps = 50/707 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             + E++ L + I+YH++ YY    P I D EYD L +   ++    P+L R    + P 
Sbjct: 2   SVKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRI---DSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           N++GG+      ++ H  P LSL   ++ +DLR F  R+  +  +    ++ + +E KID
Sbjct: 59  NRVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVEFKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y  G+F   A RGDG  GED+S  +  + +IP  L +N  + + VRGEVYISK
Sbjct: 115 GLSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
           ++F  +N++     +  +ANPRN A+G LR+L+P     R L+ FV  +    E   +  
Sbjct: 173 DNFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESH 232

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L+ +  LGF V+   +   +   ++ +       R  L Y+IDG+V KV+    + +
Sbjct: 233 SESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDE 292

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           +G  A+SPRW I++KF  ++  T+++DI +++GRTG +TP A LEPV + G  ++ ATLH
Sbjct: 293 MGYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLH 352

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NEDYI+            +DI++ D VLV++AG++IP+V+++I  ER  D   F  P  C
Sbjct: 353 NEDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKC 401

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C    +R          AA +C    +C AQ    + HFVSRDA NI+GLG+  +   
Sbjct: 402 PVCSEPTIRLEGE------AAVKCINM-SCPAQIRRGIIHFVSRDAMNIDGLGESIITLL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              +     I+  +D++ +++           +   G+ S  NL +SI K +   L R I
Sbjct: 455 LNEK----IIQDVSDLYYIKKEDVVD------LERMGEKSADNLINSIEKSKENDLWRLI 504

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             LGI+ +G + A+ LA  +          +            L  +   G I+A ++VE
Sbjct: 505 NGLGIKFIGVKAAKILAYNFKDLDEVISATS----------EQLEELEEFGSIMANSVVE 554

Query: 615 FYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           F++  +N+  +  L        S+    + V    E  K+V TGTL  ++R+ A+E + +
Sbjct: 555 FFKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKEMIEK 614

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL LL+
Sbjct: 615 RGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEERFLELLK 661


>gi|226365931|ref|YP_002783714.1| NAD-dependent DNA ligase LigA [Rhodococcus opacus B4]
 gi|254781403|sp|C1B1S4|DNLJ_RHOOB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226244421|dbj|BAH54769.1| NAD(+)-dependent DNA ligase [Rhodococcus opacus B4]
          Length = 697

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 223/709 (31%), Positives = 359/709 (50%), Gaps = 42/709 (5%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             R+  + L +++  H   YY    PII D E+DAL    + + + +PDL     P+ P 
Sbjct: 15  SVREHWNELAEDVRQHQFRYYVRDAPIISDGEFDALLGELNDLENQYPDL---RTPDSPT 71

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +GG          H    LSL+ ++  ++LR +I+R+     ++    + +  E KID
Sbjct: 72  QLVGGGFATDFASADHLERMLSLDNVFATDELRTWISRVE----QETGPDLHYLCEVKID 127

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEV 191
           G  + + YE G+ V AA RGDG +GE+V+   R I  IP  L+      IP ++EVRGEV
Sbjct: 128 GVALNLVYENGRLVRAATRGDGRTGEEVTLNARTIDDIPEKLTGTDKYPIPALLEVRGEV 187

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           +    DF ALN  ++  G+ P+ANPRN+A+G LR+ NP     R L    HGLG++    
Sbjct: 188 FFRLEDFAALNAALVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGLGRSEGFE 247

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              QY+    +   G PV+    +      +V         R  + ++IDGLV KVDE S
Sbjct: 248 PASQYDAYTALAAWGLPVSTHTVRVTGADAVVDRVQYWGEHRHDVEHEIDGLVVKVDETS 307

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG  +R+PRW I++K+  ++A+T+LLDI + +GRTG +TP A +EPV + G+ ++ 
Sbjct: 308 LQRRLGSTSRAPRWAIAYKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVTVAGSTVSL 367

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN   +K            + + +GD V++++AG+VIP+V+  +V+ R  D   F  
Sbjct: 368 ATLHNGSEVKR-----------KGVLIGDTVVLRKAGDVIPEVLGPVVDARTGDEYEFVM 416

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + +         +  A  RC     C AQ  ER+ H   R AF+IE LG + 
Sbjct: 417 PANCPECDTPLA-----PAKEGDADIRCPNQQYCPAQLRERVFHVAGRGAFDIEVLGYEA 471

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                +++     I    D+F+L       TT      G    +   L D+++  ++  L
Sbjct: 472 ATSLLEAKA----IGDEGDLFSLTEDDLLKTTLFRTKAGGLSANGRRLLDNLDSAKDKPL 527

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IRHVG   AR+LA  + S     +               L  V  VG  IA 
Sbjct: 528 WRVLVALSIRHVGPTAARALAGEFGSLDRIRES----------SVEELAAVDGVGGTIAA 577

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           A+ E++    +   V+             ++++   +E   +V TG+L+   R +A+E +
Sbjct: 578 AVAEWFGVDWHRQIVDKWSAAGVRMEDERDESIPRNLEGLSIVVTGSLETFSRDQAKEAI 637

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G   +  +S+KT  ++ G++PGSK +KA +LGV +++E+ F  LL+
Sbjct: 638 LVRGGKAAGSVSKKTAFVVAGESPGSKHDKAVELGVPVLDEDGFRRLLE 686


>gi|19552465|ref|NP_600467.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum ATCC
           13032]
 gi|62390131|ref|YP_225533.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum ATCC
           13032]
 gi|81760918|sp|Q8NR20|DNLJ_CORGL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|21324011|dbj|BAB98637.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Corynebacterium glutamicum ATCC 13032]
 gi|41325467|emb|CAF19947.1| DNA LIGASE [Corynebacterium glutamicum ATCC 13032]
          Length = 680

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 216/717 (30%), Positives = 351/717 (48%), Gaps = 52/717 (7%)

Query: 12  LSIEQARKE--LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           ++ + A+     + L +++ YH D YY   +P I D+++DAL ++   +    P+LA   
Sbjct: 1   MTEDNAQLRRTWNDLAEKVRYHRDRYYNE-QPEIPDADFDALFKQLQQLEEDHPELAV-- 57

Query: 70  DPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            P+ P   +G  +    S   V H    LSL+ +++ ++LR ++ R           +  
Sbjct: 58  -PDSPTMVVGAPVAEQSSFDNVEHLERMLSLDNVFDEQELRDWLGRT---------PAKQ 107

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PE 183
           +  E KIDG  I + Y  G+   AA RGDG  GED++A  R I  IP  L        P 
Sbjct: 108 YLTELKIDGLSIDLVYRNGQLERAATRGDGRVGEDITANARVIEDIPHQLQGTDEYPVPA 167

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHG 242
           ++E+RGEV+I+  DF  +N + IA G KP+ANPRNAA+G LR+ N  D   R L    HG
Sbjct: 168 VLEIRGEVFITVEDFPEVNAQRIADGGKPFANPRNAAAGSLRQKNIEDVKKRRLRMISHG 227

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +G T       Q++    +   G P +           +V   +     R    +++DGL
Sbjct: 228 IGFTEGFSPASQHDAYLALAAWGLPTSPYTEAVTDPEDVVKKVSYWADHRHDALHEMDGL 287

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVD+ + Q+ LG  +R+PRW I++K+  ++ +T+LLDI + +GRTG +TP A +EPV 
Sbjct: 288 VIKVDDIASQRALGSTSRAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMEPVL 347

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G+ ++ ATLHN+  +K            + + +GD V++++AGEVIP+V+  +V  R 
Sbjct: 348 VAGSTVSMATLHNQSEVKR-----------KGVLIGDTVVIRKAGEVIPEVLGPVVELRD 396

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              + + FP+ CP C +R+               RC    +C  Q   RL +   R AF+
Sbjct: 397 GTEREYIFPTLCPECGTRLA-----PAKADDVDWRCPNMQSCPGQLSTRLTYLAGRGAFD 451

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IE LG++  +   ++      +   + +F L      S+       G  + S   L D++
Sbjct: 452 IEALGEKGAEDLIRT----GILLDESGLFDLTEDDLLSSNVYTTNAGKVNASGKKLLDNL 507

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K +   L R + +L IRHVG   AR+LA  Y S Q                   L    
Sbjct: 508 QKSKQTDLWRVLVALSIRHVGPTAARALAGRYHSIQALIDAP----------LEELSETD 557

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            VG IIAQ+  ++++   +   V+              +     +E   +V TG L+   
Sbjct: 558 GVGTIIAQSFKDWFEVDWHKAIVDKWAAAGVTMEEEVGEVAEQTLEGLTIVVTGGLEGFT 617

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R   +E +   G   S  +S+KTD +++G+N GSK  KA++LG++I++E  F+ LL 
Sbjct: 618 RDSVKEAIISRGGKASGSVSKKTDYVVIGENAGSKATKAEELGLRILDEAGFVRLLN 674


>gi|255327262|ref|ZP_05368336.1| DNA ligase, NAD-dependent [Rothia mucilaginosa ATCC 25296]
 gi|255295542|gb|EET74885.1| DNA ligase, NAD-dependent [Rothia mucilaginosa ATCC 25296]
          Length = 735

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 235/733 (32%), Positives = 365/733 (49%), Gaps = 57/733 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  R E + L  +I      YY    P + D+EYD L RR + I    P +  +   + P
Sbjct: 21  EALRAEYAELTDKIRAARRAYYNEDAPFLSDAEYDKLYRRLEIIEAEHPLIIAN---DSP 77

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE   +   VTH     SLE +++ E+LR ++T+     +    ++  +  E KI
Sbjct: 78  TQEVGGEAIEAFAPVTHLQRMYSLEDVFSFEELRAWLTKTEESTRNLTGSAPQWLTELKI 137

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193
           DG  + + Y  G  V AA RGDG +GEDV+  +R I +IP+ L+  N PE IE+RGEV+I
Sbjct: 138 DGLAVNLLYRNGTLVRAATRGDGTTGEDVTHNVRTIASIPQQLTGENHPEEIEIRGEVFI 197

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
           S  DF  LN+ MIA G+ P+ANPRNAA+G LR+ +     +R L+ +VHG+G  + +   
Sbjct: 198 SSADFEKLNESMIAAGKNPFANPRNAAAGSLRQKDAAITASRPLSMYVHGIGSRTGLDIA 257

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            QYE    +   G PV+     A     +  + N+    R +L ++IDG+V KV++F+ Q
Sbjct: 258 TQYETYDLLASWGLPVSPYSEIAANTEAVFDFINKYGEQRHSLVHEIDGIVIKVNDFATQ 317

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            QLG  +R PRW +++K+  ++  T+LLDI + +GRTG +TP   +EPV + G+ +  AT
Sbjct: 318 AQLGYTSRVPRWAVAYKYPPEEVHTKLLDIRVDVGRTGRVTPYGVMEPVFVSGSTVERAT 377

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+D +K            + + +GD V++++AG+VIP++V  +V  R    + F  PS
Sbjct: 378 LHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVAPVVALRDGTEREFVMPS 426

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S +         +     RCT   +C AQ  ER+ +  SR AF+IE LG +   
Sbjct: 427 ECPSCGSPLA-----PGKEGDVDLRCTNPRSCPAQLTERVYYAASRGAFDIEALGFEAAK 481

Query: 493 FFFKSEDP-AFSIRIPADIFTLQRRQ-------------------------QTSTTKIEN 526
                  P    +   A +F+L                               +      
Sbjct: 482 ALTSPATPHTPPLTTEAHLFSLNIEDLREVTIEREKKVKGVGTGKMERVPYFYTKPTKAR 541

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
                  +  NL+  + K +   L R + +L IRHVG   AR+LA  + S Q   +    
Sbjct: 542 PEPKPTKNTLNLFAELEKAKQQPLWRVLVALSIRHVGPTAARALAAEFGSMQAIREA--- 598

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
                  D   L  V  VG  IA +I+E++    +   V++            +++V   
Sbjct: 599 -------DRERLAAVDGVGTTIADSIIEWFAEDWHAEVVDSWAAAGVRMEDTRDESVERT 651

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +E   +V TGTL    R  A+E +   G   S  +S++T  ++ G N GSKL+KAQQLG+
Sbjct: 652 LEGLTVVVTGTLNGYTRDGAKEAIISRGGKASGSVSKRTHFVVAGANAGSKLDKAQQLGL 711

Query: 707 KIMNEEQFLFLLQ 719
           K+++EE F  LL+
Sbjct: 712 KVLDEEGFTALLE 724


>gi|110637718|ref|YP_677925.1| DNA ligase [Cytophaga hutchinsonii ATCC 33406]
 gi|123354667|sp|Q11VI1|DNLJ_CYTH3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110280399|gb|ABG58585.1| DNA ligase [Cytophaga hutchinsonii ATCC 33406]
          Length = 670

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 212/713 (29%), Positives = 364/713 (51%), Gaps = 49/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++  QA   +  L + + YH++ YYQ     I D E+D L +    +   FP   ++   
Sbjct: 1   MNDAQALARIEELNKVLHYHNNLYYQKDTTEISDFEFDTLLQELIELEKQFPLYLKA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +      ++H  P LSL   ++ E++R+F  R+ +       +++ +  E
Sbjct: 58  DSPSQRVGGTVTKEFASISHKYPMLSLSNTYSEEEIREFDERVQKAVG----HAVEYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
            K DG  I+I Y+ G    A  RGDG  G+DV+  I+ I +IP ++ S   PE  EVRGE
Sbjct: 114 MKFDGVAISITYKNGMIAQAVTRGDGVRGDDVTNNIKTIKSIPLKIQSATFPEEFEVRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           VY+    F  +N E   +G    ANPRNAASG ++  +   + +                
Sbjct: 174 VYLPYEMFERINQEREDIGEAALANPRNAASGTVKMQDSGIVAKRALDCFIYSLLQDSNK 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L +++  GF V++  +       I+ Y N     R  LP   DG+V KV++  
Sbjct: 234 QPTHAAALAQLKEWGFRVSDSYKVCKNVDEIIQYINHWSEERFKLPLATDGIVIKVNDLR 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  A+SPRW I++KF  ++AST +L ++ Q+GRTG +TPVA L PV++ G  +  
Sbjct: 294 LQSELGMTAKSPRWAIAYKFKAEEASTPILSVEYQVGRTGAVTPVANLAPVHLAGTTVKR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN + ++ L           ++ +GD V V++ GE+IPK+  + V++R   +Q   F
Sbjct: 354 ATLHNANEMERL-----------NLHIGDTVFVEKGGEIIPKITRVDVSKRIAGSQMIPF 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
              CP+C ++++R          AA  C     C+ Q   +++HF+ R A NI+G+G + 
Sbjct: 403 IQNCPVCDTKLIRIEGE------AAWYCPNDKGCAPQITGKIEHFIQRKAMNIDGIGSET 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  ++ +     IR  AD++TL   Q         +  FG+ SVTN+ + I   +    
Sbjct: 457 IELLYQKK----LIRNVADLYTLTYDQLI------QLDRFGEKSVTNVLNGIEASKQTPF 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +  +F++GIR+VG+ +A  LA ++ S     +               L++ P +G  IAQ
Sbjct: 507 KSVLFAIGIRYVGSTVAEKLALHFKSINALEKA----------SIEELLQAPEIGIKIAQ 556

Query: 611 AIVEFYQNPRNICAVEALLKEVS-PSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +I+E++    N+  +E L K      +  HE  K  S +   K  V +G  +  +R + +
Sbjct: 557 SIIEWFSVDTNVQLIEDLKKAGVKLELSEHEILKPESDKFAGKSFVISGVFENYERDELK 616

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + + + G  +S+ ++ K + ++ G+N G +KLEKAQ+L + I++E +F+ LL 
Sbjct: 617 DLILKNGGKISSGITGKLNYLVAGENMGPAKLEKAQKLNITILSEAEFISLLN 669


>gi|295084199|emb|CBK65722.1| DNA ligase, NAD-dependent [Bacteroides xylanisolvens XB1A]
          Length = 666

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 227/709 (32%), Positives = 355/709 (50%), Gaps = 51/709 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+     D N P 
Sbjct: 2   DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEYK---DENSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N +  +V H  P LSL   ++  ++  F  R+ +      +       E K D
Sbjct: 59  MRVGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKAL----NEDFEICCEMKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           GT I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ + 
Sbjct: 115 GTSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
              F  LN E  A     +ANPRNAASG L+  N + +                +   G 
Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGDNLPCDGH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK 
Sbjct: 235 YENLQEAAKWGFKISDLTRKCQTLEDVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKN 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LH
Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-HPDAQPFSFPSF 433
           N D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F   
Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIVN 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S++VR          AAH C    AC  Q   +++HF+SR A NI+GLG + +D 
Sbjct: 404 CPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDM 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F++       I   AD++ L             +   G+ S  N+   I + + +  ER 
Sbjct: 458 FYR----LGLIENTADLYKLTADDIKG------LDRMGEKSAENIVTGIAQSKTVPFERV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG  +A+ +AK + +  +  Q           D   L+ +  +G+ IAQ+I+
Sbjct: 508 IFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIAQSIL 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYV 670
            ++ N  N   V  L KE    + R E+++S    ++  + +V +G      R + +E +
Sbjct: 558 AYFANESNRELVNRL-KEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFIHHSRDEYKELI 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            + G      +S KT  I+ GDN G +KLEKA++LG+ I++E++FL L+
Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665


>gi|325335472|gb|ADZ11746.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Riemerella
           anatipestifer RA-GD]
          Length = 669

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 219/711 (30%), Positives = 354/711 (49%), Gaps = 46/711 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S++  + ++  L +E+  H+  YY    P I D E+D +      +  A+P+ A   D 
Sbjct: 1   MSLDDIKHKIEELREELHQHNYNYYVLDTPSISDYEFDMMLEELKELELAYPEFA---DN 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG +  +   V H     SL+  +N EDL  +  R+ +     D   I +  E
Sbjct: 58  NSPTQRVGGNITKNFPTVEHRHRMYSLDNSYNFEDLSDWQNRLIKSL---DTTDIEYVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I+I YE G F  A  RGDG  G++++A ++ I  IP  +    P    +RGE+
Sbjct: 115 LKYDGASISILYENGAFKQAITRGDGFQGDEITANVKTISDIPLKIKGEYPNTFYIRGEI 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           Y++K  F  +N      G   + NPRN ASG L+  + T++ +     V       E   
Sbjct: 175 YLTKKHFNLINKAREKEGLDLFMNPRNTASGSLKMQDSTEVRKRKLSAVLYQVVAEETPV 234

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K  +E+L++ +  GF  +   +       + ++ +     R  L ++IDG+V KV+    
Sbjct: 235 KTHWELLEQTKDWGFKTSQQAKLCKNLDEVKAFIDYWDKERQHLDFEIDGIVIKVNSLKQ 294

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  A+SPRW +++KF  ++  T+L  I  Q+GRTG +TPVA L+PV + G ++  A
Sbjct: 295 QQLLGYTAKSPRWAMAYKFKAEKVETQLESISYQVGRTGAITPVANLKPVLLAGTVVKRA 354

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHNED I+ L           ++   D V V++ GE+IPK+V +   +R P+A    + 
Sbjct: 355 SLHNEDIIRKL-----------NLHNQDFVYVEKGGEIIPKIVGVNEEKRQPNATLVEYI 403

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP C + +VR+         AAH C     C  Q + ++ H+VSR A NIE LG + +
Sbjct: 404 SHCPECNTPLVRNEGE------AAHFCPNEAHCPPQVVGKMIHYVSRKALNIENLGSETI 457

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F+       I   AD +TL + Q      +  +    + S  N+ D I K + I  E
Sbjct: 458 EQLFRE----GLISNIADFYTLTKEQ------LLPLERMAEKSAQNILDGIEKSKQIPFE 507

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +F LGI+HVG  +A+ L K + +     +               L  V  VG  IA++
Sbjct: 508 KVLFGLGIKHVGETVAKKLVKNFHTIDGLKKAT----------LEELTEVEDVGIKIAES 557

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +V ++QN  NI  ++ L             N  VS  +E K  +FTG L    R +A+E 
Sbjct: 558 LVNYFQNEENIEILDRLKSYGIQLEQEENTNTKVSDALEGKTFLFTGKLSLFTREQAEEM 617

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719
           V + G    + +S+  + ++VG+  GSKL+KAQ LG V I++E++FL L+ 
Sbjct: 618 VEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQTLGTVTILDEQEFLDLIN 668


>gi|269792727|ref|YP_003317631.1| DNA ligase, NAD-dependent [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100362|gb|ACZ19349.1| DNA ligase, NAD-dependent [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 673

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 229/713 (32%), Positives = 360/713 (50%), Gaps = 50/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    AR  +  L + I +HD  YYQ + P I D EYDAL R    +  +FPDL     P
Sbjct: 1   MDRSAARSRMEELAELIRHHDRLYYQENSPEITDQEYDALFRELVDLERSFPDL---RLP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G  + +  ++ HS P LSL+   + E++  F+ R+Y         S     E
Sbjct: 58  DSPTLRVSGSPSEAFKRLPHSEPMLSLDNAVSREEVSDFLRRLYDALG----GSAPVVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK+DG  +++ Y  G  +    RGDG  GEDV++ +  I  +P    ++    +EVRGEV
Sbjct: 114 PKLDGLAVSLLYRGGVLIRGLTRGDGSVGEDVTSNVMTIRDLP--KRIDYMGELEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+S+ DF ALN      G  P+ANPRNAA+G LR+L+P     R L+ F++ +    E+ 
Sbjct: 172 YMSRRDFAALNQRREEEGLPPFANPRNAAAGSLRQLDPRVTAQRNLSCFLYHVVNHREVG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q E+L  ++   FPV    R       ++ Y ++    R + P D DG+V K+D   
Sbjct: 232 LKTQEELLLWLKGRSFPVQEDFRLCRDPEEVLEYLDDWDRRRHSYPADTDGVVIKLDSLE 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG   RSPRW ++ KF  ++  TR+L I++ +GRTG++TP A LEPV + G  +  
Sbjct: 292 GREVLGSTNRSPRWAVAFKFPPEERPTRVLSIEVSVGRTGVVTPTAVLEPVRLSGTEVRR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D +             +D+RVGD V V++AGE+IP+V+ + +  R     PF  
Sbjct: 352 ASLHNFDELAR-----------KDVRVGDTVWVRKAGEIIPEVIRVDLGLRPEGTAPFVP 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C SR+VR           A RC    +C AQ  ER+ HF SRD  ++ GLG++ 
Sbjct: 401 PEGCPSCGSRLVRLPGE------VAIRCINP-SCPAQMKERIIHFASRDGMDVRGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                        ++  AD+F L      S      +   G+ S +NL  +++  R+  L
Sbjct: 454 ASQLVDR----GMVKDLADLFFLTMEDWLS------LDRMGERSASNLVRALDVARDRPL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + I++LGI  VG   A+ LA  +   +                   L  V  VG ++A+
Sbjct: 504 RKLIYALGIPGVGERTAQDLADRFGRLEALMDASE----------EELASVEGVGPVVAR 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ +F++N   +  V  L                  +E  + VFTG L  ++R +AQ+ V
Sbjct: 554 SVRDFFRNDSTVRLVRRLRDAGVRM--EERPTAGGPLEGMRFVFTGELGSMRRKEAQDLV 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            +LG  VS  +S+    ++ G+  GSKL +A+ LGV I +E++FL L++++  
Sbjct: 612 IRLGGKVSDSVSKGVTALVAGEGGGSKLSRARALGVPIWSEDRFLELVREHTD 664


>gi|218281363|ref|ZP_03487841.1| hypothetical protein EUBIFOR_00406 [Eubacterium biforme DSM 3989]
 gi|218217455|gb|EEC90993.1| hypothetical protein EUBIFOR_00406 [Eubacterium biforme DSM 3989]
          Length = 667

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 236/706 (33%), Positives = 360/706 (50%), Gaps = 47/706 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S+   +  +  L +E+  +   YY Y  P I D EYD L +   A+   +P+     D 
Sbjct: 1   MSMMDEKARILELRKELEKYSIEYYVYDNPSITDQEYDRLMQELMALEEKYPE---MYDA 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  +I G +     KVTH    LSL  ++N E++ +F+ RI          +  F +E
Sbjct: 58  TSPSQRIIGSVLDGFEKVTHDTQMLSLSNVFNKEEIEEFVQRISESVS-----NPEFVVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  + + Y+ G F  A  RGDG  GEDVS  ++ I +IP  +       +EVRGEV
Sbjct: 113 CKYDGLAMALLYDDGNFTRAVTRGDGIVGEDVSNNVKTILSIPMHIPEMRH--VEVRGEV 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+ K  F  LN      G  P+ANPRNAA+G +R+L+ +   +R L+ + +     S+  
Sbjct: 171 YMPKASFEQLNKRQEEKGLAPFANPRNAAAGSIRQLDSSICASRKLDAYWYYFQNASDFA 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + Q E LQ M  + F  N   +   T   I  +  E++  R  LPY+IDG+V K++  +
Sbjct: 231 VQTQEEALQAMSKMHFRTNPLRKVCTTVEQIWQFIQEIQEKREDLPYEIDGMVIKLNNLA 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+ PR+  ++KF  ++  TRL DI I +GRTG +TP A LEPV + G  ++ 
Sbjct: 291 DQRRLGSTAKVPRYATAYKFPAQEVLTRLKDIVITVGRTGKITPNAVLEPVRVAGTTVSA 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A LHNED I             +D+R+GD V+V++AGE+IP+VV  +   R     P+ F
Sbjct: 351 AQLHNEDMI-----------VNKDLRIGDIVVVRKAGEIIPEVVTSVPERRDGTQVPYKF 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CPIC S +VR  +       AAH C     C A+ +E + HF SRDA NI+ LG ++
Sbjct: 400 PTTCPICGSHLVRLPDE------AAHYCIN-QDCPARVVESMIHFASRDAMNIDTLGDKK 452

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++   +       +    DI+ L R       ++    G+   SV  L +SI K +   L
Sbjct: 453 IEQLHEW----GYLNSIEDIYFLDRY----YDELIEKPGYQKKSVDKLLESIEKSKKQPL 504

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
              ++ LGIR VG + A  LA+ +                       L+ +  +G I A 
Sbjct: 505 GVILYGLGIRQVGKKAAMILAEQFGDIDTLMHAC----------VDELVLIHDIGLITAS 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++V F++  +N+  ++ L +         ++ V S   NK  V TGTL+   R++A+  +
Sbjct: 555 SVVAFFKEEKNLHLIDVLKQAGCNFKQEKKQVVESRFTNKTCVLTGTLEHYTRNEAKAIL 614

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
             LGA VS  +S+KTD +I G   GSKL KAQ LGV  M+EE+F+ 
Sbjct: 615 ESLGANVSGSVSKKTDYVIYGTAAGSKLTKAQSLGVMTMSEEEFVQ 660


>gi|161723110|ref|YP_288664.2| NAD-dependent DNA ligase LigA [Thermobifida fusca YX]
          Length = 731

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 231/736 (31%), Positives = 350/736 (47%), Gaps = 64/736 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
               R+  + L Q++  +   YY    PII D+EYD L      +   +P L     P+ 
Sbjct: 13  PADVRERHARLSQDLDDYSYRYY-LGSPIISDAEYDQLMAELRDLEAQYPSLV---TPDS 68

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+G  ++     V H     SL+  ++   L  +  R+       +     F  E K
Sbjct: 69  PTQKVGAPISNEFAPVEHLERMQSLDNAFSDAQLEAWAHRV-----SAEVPVDAFLCELK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGE 190
           IDG  + + YEKG+ V AA RGDG  GED++  IR I T+P          PE++EVRGE
Sbjct: 124 IDGLAVALVYEKGRLVRAATRGDGRIGEDITLNIRTIDTVPLRLDESRYPAPELLEVRGE 183

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V++    F  LN  +   G+ P+ANPRNAA+G LR+ +P    +R L+  VHG+G    +
Sbjct: 184 VFLPVKAFEQLNSRLADEGKPPFANPRNAAAGSLRQKDPRVTASRPLSMLVHGIGAHRGV 243

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q +  + +   G PV++ +R  +T   +  Y       R    Y+IDG+V KVD+ 
Sbjct: 244 TITHQSQSYELLAAWGLPVSDRIRVVSTLDEVREYIAYYAEHRHDPEYEIDGVVVKVDDV 303

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ++LG  +R+PRW I++K+  ++ +T+LLDI   +GRTG +TP A LEPV + G+ + 
Sbjct: 304 SLQRRLGSTSRAPRWAIAYKYPPEEVTTKLLDIKTSVGRTGRVTPYAVLEPVKVAGSEVE 363

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   +             + + +GD V+V++AG++IP+VV  +V +R    +PF 
Sbjct: 364 FATLHNAQEVAR-----------KGVLIGDTVVVRKAGDIIPEVVGPVVEKRTGTERPFV 412

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S + +       +     RC     C  Q  ERL     R A +IE LG  
Sbjct: 413 MPTECPECGSPLGQQ-----KEGDVDLRCPNTRYCKGQLRERLAFIAGRKALDIEALGYV 467

Query: 490 QLDFFFKSEDPA-FSIRIPADIFTLQRRQ------------------------QTSTTKI 524
                 +  +PA   +R   D+F+L   Q                            +  
Sbjct: 468 AATALTQPLEPAEPPLRDEGDLFSLTVEQLLPIRTLVLDPDTAEPKIDPKTGKPKVVSFF 527

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
            N  G     V  L+  + + +   L R + +L IRHVG   A  LA+++ S    AQ  
Sbjct: 528 ANQKGEPKKIVEKLFQQLEEAKKRPLWRVLVALSIRHVGPRAAEDLARHFRSLDAIAQAS 587

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
                        L  V  +G  IA++IV+++    +   VE               +  
Sbjct: 588 E----------EELEAVEGIGPTIARSIVDWFSVDWHREIVEKWRAAGVRMEEEGADDGP 637

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             ++    V TGTL+K  R  A+E V +LG  V+  +SRKTD ++VG NPGSK +KA +L
Sbjct: 638 RLLDGITTVITGTLEKYSRDGAKEAVQKLGGRVTGSVSRKTDFVVVGANPGSKYDKAVKL 697

Query: 705 GVKIMNEEQFLFLLQQ 720
           GV I++E  F  LL Q
Sbjct: 698 GVPILDEAGFEVLLTQ 713


>gi|123774771|sp|Q47SC6|DNLJ_THEFY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71914739|gb|AAZ54641.1| NAD-dependent DNA ligase [Thermobifida fusca YX]
          Length = 745

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 231/736 (31%), Positives = 350/736 (47%), Gaps = 64/736 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
               R+  + L Q++  +   YY    PII D+EYD L      +   +P L     P+ 
Sbjct: 27  PADVRERHARLSQDLDDYSYRYY-LGSPIISDAEYDQLMAELRDLEAQYPSLV---TPDS 82

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+G  ++     V H     SL+  ++   L  +  R+       +     F  E K
Sbjct: 83  PTQKVGAPISNEFAPVEHLERMQSLDNAFSDAQLEAWAHRV-----SAEVPVDAFLCELK 137

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGE 190
           IDG  + + YEKG+ V AA RGDG  GED++  IR I T+P          PE++EVRGE
Sbjct: 138 IDGLAVALVYEKGRLVRAATRGDGRIGEDITLNIRTIDTVPLRLDESRYPAPELLEVRGE 197

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V++    F  LN  +   G+ P+ANPRNAA+G LR+ +P    +R L+  VHG+G    +
Sbjct: 198 VFLPVKAFEQLNSRLADEGKPPFANPRNAAAGSLRQKDPRVTASRPLSMLVHGIGAHRGV 257

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q +  + +   G PV++ +R  +T   +  Y       R    Y+IDG+V KVD+ 
Sbjct: 258 TITHQSQSYELLAAWGLPVSDRIRVVSTLDEVREYIAYYAEHRHDPEYEIDGVVVKVDDV 317

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SLQ++LG  +R+PRW I++K+  ++ +T+LLDI   +GRTG +TP A LEPV + G+ + 
Sbjct: 318 SLQRRLGSTSRAPRWAIAYKYPPEEVTTKLLDIKTSVGRTGRVTPYAVLEPVKVAGSEVE 377

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   +             + + +GD V+V++AG++IP+VV  +V +R    +PF 
Sbjct: 378 FATLHNAQEVAR-----------KGVLIGDTVVVRKAGDIIPEVVGPVVEKRTGTERPFV 426

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C S + +       +     RC     C  Q  ERL     R A +IE LG  
Sbjct: 427 MPTECPECGSPLGQQ-----KEGDVDLRCPNTRYCKGQLRERLAFIAGRKALDIEALGYV 481

Query: 490 QLDFFFKSEDPA-FSIRIPADIFTLQRRQ------------------------QTSTTKI 524
                 +  +PA   +R   D+F+L   Q                            +  
Sbjct: 482 AATALTQPLEPAEPPLRDEGDLFSLTVEQLLPIRTLVLDPDTAEPKIDPKTGKPKVVSFF 541

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
            N  G     V  L+  + + +   L R + +L IRHVG   A  LA+++ S    AQ  
Sbjct: 542 ANQKGEPKKIVEKLFQQLEEAKKRPLWRVLVALSIRHVGPRAAEDLARHFRSLDAIAQAS 601

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
                        L  V  +G  IA++IV+++    +   VE               +  
Sbjct: 602 E----------EELEAVEGIGPTIARSIVDWFSVDWHREIVEKWRAAGVRMEEEGADDGP 651

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             ++    V TGTL+K  R  A+E V +LG  V+  +SRKTD ++VG NPGSK +KA +L
Sbjct: 652 RLLDGITTVITGTLEKYSRDGAKEAVQKLGGRVTGSVSRKTDFVVVGANPGSKYDKAVKL 711

Query: 705 GVKIMNEEQFLFLLQQ 720
           GV I++E  F  LL Q
Sbjct: 712 GVPILDEAGFEVLLTQ 727


>gi|291544905|emb|CBL18014.1| DNA ligase, NAD-dependent [Ruminococcus sp. 18P13]
          Length = 660

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 222/706 (31%), Positives = 360/706 (50%), Gaps = 51/706 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  EQA+  L+ L +EI  H+  YY    P I D +YDAL R   AI   +P L     P
Sbjct: 1   MDFEQAKLRLAQLTKEIEQHNYAYYVLDAPTIEDCDYDALMRELKAIETEYPQLL---SP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       KVTH++   SL  +++ E++  F+    +           FT+E
Sbjct: 58  HSPSQRVGGMALSDFQKVTHTVQMGSLRDVFSFEEVAAFVAECQQKLDAP-----RFTVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++ YE G     + RGDG  GEDV+  IR I +IP  L  + P ++EVRGEV
Sbjct: 113 PKIDGLSVSLLYENGVLTCGSTRGDGFVGEDVTGNIRTIRSIPLRL-EDAPALLEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ ++ FL L ++      +P+ NPRNAA+G LR+ +      R L+ FV  + + +   
Sbjct: 172 FMPRDSFLKLVEQQELADEQPFKNPRNAAAGSLRQKHAEVTAKRRLDIFVFNVQQMTGGL 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  MR LGF      R   T+  I    + +   R+ LPYDIDG+V KV++ +
Sbjct: 232 HGTHAESLTWMRKLGFKTVE-FRLCETYQEIREQISRIGEERAKLPYDIDGVVIKVNDLA 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ +G   + P+W +++KF  ++  TRL  I++ +GRTG +TPVA  +P+ + G  ++ 
Sbjct: 291 QRQVMGATTKVPKWAVAYKFPPEEKETRLQKIEVNVGRTGAITPVAVFDPITLAGTSVSR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A LHN+ +I             +DIRVGD + V++AGE+IP+V+  + ++  PD+ P++ 
Sbjct: 351 AVLHNQQFI-----------ADKDIRVGDMIRVRKAGEIIPEVLASVSHQ--PDSVPYTL 397

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C +  VRD      +            C AQ L+ + HF S+ A NI+G+G   
Sbjct: 398 PTHCPVCGTEAVRDPEESVLR-------CPNTDCPAQLLKNVIHFASKGAMNIDGMGPAI 450

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                 +      IR  AD++TL      S      +  F + S  NL D+I K ++  L
Sbjct: 451 AQALLDN----GKIRSVADLYTLTMEDLLS------LDRFAEKSARNLLDAIEKSKSAPL 500

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +R IF LGIR +G   A  L   + S +                   L  +   G I+A+
Sbjct: 501 DRVIFGLGIRGIGQRAAVLLCDRFPSVEQIMNA----------SVEQLAEIDGFGSIMAE 550

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++V+ ++ P  +  V+ L         +  +           V TGTL  ++R +A++ +
Sbjct: 551 SVVQAFREPHRVALVQRLQACGVTMQYQAAQAQDQRFVGMTFVLTGTLPTMKRDEAKKLI 610

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
              G  VS  +S+KT +++ G++ GSKL KA+ LGV++++E + L 
Sbjct: 611 ESFGGKVSGSVSKKTSVVVAGEDAGSKLMKAESLGVEVIDEAELLR 656


>gi|15606063|ref|NP_213440.1| DNA ligase (NAD dependent) [Aquifex aeolicus VF5]
 gi|7673992|sp|O66880|DNLJ_AQUAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|2983242|gb|AAC06838.1| DNA ligase (NAD dependent) [Aquifex aeolicus VF5]
          Length = 720

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 237/725 (32%), Positives = 388/725 (53%), Gaps = 51/725 (7%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           R++  ++ LS E+A+K    L + I YHD  YY  + P+I D +YD L R    I   +P
Sbjct: 19  RKIKDVKVLSFEEAKKLAEDLREVIRYHDYKYYVEANPVIPDYDYDRLFRALKEIEKKYP 78

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           +L     P+ P  ++  E++     V H  P LSL+  ++ ++LR+F  R+ +    +  
Sbjct: 79  ELI---TPDSPTQRVASEISGEFPTVKHYTPMLSLDNAYSEDELREFDRRVRQITGLEV- 134

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
             + + +EPK+DG  I + YE   FV  A RGDG  GED++  ++ I TIP     +   
Sbjct: 135 --VEYAVEPKLDGAGIALVYENDLFVRGATRGDGEYGEDITNNLKTIKTIPLKAEFSRFG 192

Query: 184 II--EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY----LN 237
           I   E+RGEV I K++F  LN E +  G  P+ANPRNAA+G +R+ +P ++ +     + 
Sbjct: 193 IKLAEIRGEVVIRKDEFQKLNKERMEEGLPPFANPRNAAAGSIRQKDPKEVAKRNLEAIV 252

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           + +  +             +          +    +       ++ Y  E +  R + PY
Sbjct: 253 YHLSYVEPPETEPPTHYESLKMLHTLGFKTLFKDTKVCKGIDEVIEYCKEWEKKRDSYPY 312

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KV++  L K LG  +  PRW I++KF  ++A T+L+D+  Q+GRTG +TPV +
Sbjct: 313 EIDGMVVKVNDRRLWKVLGYTSHHPRWAIAYKFKPRRAVTKLVDVVFQVGRTGTITPVGK 372

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV +GG  +++ +L NED+I+            +DIR+GD V+V+RAG+VIP VV+++
Sbjct: 373 LEPVELGGVTVSSVSLFNEDFIR-----------EKDIRIGDWVVVERAGDVIPYVVEVL 421

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
             +R  + +P  FP +CP C S +V+           A RC   ++C AQ + R+KH+ S
Sbjct: 422 KEKRTGEEKPVEFPKYCPSCGSELVKLPEE------VAIRCIN-ISCPAQSVLRIKHWAS 474

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           RDA +I GLG   +   F         +   D++ L        T I  + GFG+ S  N
Sbjct: 475 RDAMDIRGLGDATIKLLFNR----GLAKDVGDLYYL------KLTDILKLPGFGEKSAMN 524

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L  +I + +N  L+R ++ LGIR+VG   A+ +A          + IN++    +     
Sbjct: 525 LLKAIEESKNRPLDRVLYGLGIRYVGQTTAKKIA----------EIINSVWDLKDIPLEK 574

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
           L+R+  +G  +A++I EF+  P+N+  ++ L K       + ++ V+  ++ K  VFTGT
Sbjct: 575 LMRLEGIGYKVARSIKEFFNIPQNLEVLKKLEKAGVNLAKKVKEKVADVLKGKTFVFTGT 634

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716
           L    R KA E V  LG   S  ++ KTD ++VG +PG +KL KA++ GVK + EE+F+ 
Sbjct: 635 LDCCSREKAGEIVEMLGGKFSNSVTSKTDYLVVGKDPGATKLSKAKKYGVKTITEEEFVN 694

Query: 717 LLQQY 721
           +++ Y
Sbjct: 695 MIKDY 699


>gi|227515527|ref|ZP_03945576.1| DNA ligase (NAD(+)) [Lactobacillus fermentum ATCC 14931]
 gi|227086140|gb|EEI21452.1| DNA ligase (NAD(+)) [Lactobacillus fermentum ATCC 14931]
          Length = 679

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 242/726 (33%), Positives = 391/726 (53%), Gaps = 51/726 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K++   +  L+ +QA+ EL+ L +++      YY+   P + D  YD   +R   I  
Sbjct: 1   MSKQE--AVSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQ 58

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FPDL     P+ P  ++GG     L KV H IP LS+  +++  +L  F  R       
Sbjct: 59  RFPDLVV---PDSPTQRVGGAAESQLNKVIHEIPMLSMGDVFSPAELADFNRRQQD--NS 113

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                  + LE KIDG  +++ YE G+ V  + RG+G  GEDV+  ++ I +IP+VL   
Sbjct: 114 DVKVDFDYNLELKIDGLSLSLVYENGRLVQGSTRGNGTIGEDVTENVKTIKSIPQVLPEP 173

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +   +E RGE Y+ K  F+ LN+   A G+  +ANPRNAA+G LR+L+P     R L+ F
Sbjct: 174 LS--LEFRGECYMPKEAFVKLNERREAEGQPVFANPRNAAAGSLRQLDPKVTAARQLDTF 231

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ +     +    Q + L+KMR LGF VN   R  ++   + +Y  E    R  LPY I
Sbjct: 232 MYYVPDYQALGVTTQAQALEKMRALGFAVNPNYRVVHSQAELTAYIEEYTEKRDQLPYGI 291

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV++ + Q  LG   + PRW I++KF  ++ +T + DI+  +GRTG +TP A ++
Sbjct: 292 DGIVEKVNDLATQVALGNTVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMD 351

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G  ++ A+LHN DY+             +DIR+GD VL+ +AG++IP++  +I+ 
Sbjct: 352 PVQLAGTTVSRASLHNPDYL-----------AEKDIRLGDTVLLHKAGDIIPEISRVIIE 400

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  D++P+  P+ CP C + +V   +        A RC   + C AQ  E L HF SR+
Sbjct: 401 KRPADSKPYEVPTTCPECGADLVHLDDE------VALRCVNPM-CPAQIKEGLAHFASRN 453

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A NI+GLG + ++  +        ++  AD++ L+  Q  +      +  FG+ S++NL 
Sbjct: 454 AMNIDGLGPKIIEQLWDK----GMVKDVADLYRLEAAQLLT------LPKFGEKSISNLL 503

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R+ S ER +F LGIRHVGA++A+ LA  + S                 D  ++ 
Sbjct: 504 TAIANSRHNSCERLLFGLGIRHVGAKVAQLLAAEFKSVDALMAA----------DAATIS 553

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTG 656
            V  +G II  A+  ++QN +    +  L +                S+E   K++V TG
Sbjct: 554 AVDSIGPIIGDAVATYFQNEQVHQLIAELKEVGVNMDYLAPTTSATESAEWAGKRVVLTG 613

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L K+ R +AQE+++  GA V+  +S+KTD++I G+  GSKLEKAQ LG+++ +E++F  
Sbjct: 614 KLTKMTRGQAQEWLSARGASVTGSVSKKTDLLIAGEKAGSKLEKAQTLGIEVWDEDRFDQ 673

Query: 717 LLQQYN 722
            +++ N
Sbjct: 674 AMKEEN 679


>gi|227832930|ref|YP_002834637.1| DNA ligase [Corynebacterium aurimucosum ATCC 700975]
 gi|262182581|ref|ZP_06042002.1| NAD-dependent DNA ligase LigA [Corynebacterium aurimucosum ATCC
           700975]
 gi|254781299|sp|C3PFU5|DNLJ_CORA7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|227453946|gb|ACP32699.1| DNA ligase [Corynebacterium aurimucosum ATCC 700975]
          Length = 674

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 209/714 (29%), Positives = 356/714 (49%), Gaps = 50/714 (7%)

Query: 12  LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           +S     ++E S L QE+  H + YY   +P I D+++D L +R  A+    P+L   + 
Sbjct: 1   MSDAVDIQREWSELAQEVRKHRELYYN-GEPSIPDADFDELFQRLLALEAEHPEL---QT 56

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+ P  ++G         + H     SL+ +++ E+L+ ++ R           +  +  
Sbjct: 57  PDSPTQQVGAAP-EGAVDIEHLERLYSLDNVFSAEELQDWLDRT---------PAEAYLT 106

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE----IIE 186
           E KIDG  I + Y  GK V AA RGDG  GED++A  R IP IP  L+         ++E
Sbjct: 107 ELKIDGLSIDLVYRDGKLVTAATRGDGRVGEDITANARVIPDIPHELTGTDEYPVPSLVE 166

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245
           VRGEVY+  ++F  +N      G+  +ANPRNAA+G LR  +P D   R L+   HG+G 
Sbjct: 167 VRGEVYMRPDEFEEINAARREDGKPTFANPRNAAAGGLRMKDPEDVKKRRLHMVCHGIGA 226

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                   Q++  + +   GFPV+   ++  T   +       +  R    +++DGLV K
Sbjct: 227 RERFQPTSQHDAYKALEAWGFPVSPYTQRVTTAKEVQERVTYWEEHRHDAYFEMDGLVIK 286

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ + Q+ LG  +R+PRW I++K+  ++ +T+LL+I++ +GRTG +TP A +EPV + G
Sbjct: 287 VDDLASQRALGATSRAPRWAIAYKYPPEEVTTKLLNIEVGVGRTGRVTPFAIMEPVFVSG 346

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + ++ ATLHN+  +K            +++ +GD +++++AGE+IP+V+  ++++R    
Sbjct: 347 STVSMATLHNQFEVK-----------NKNVLIGDTIIIRKAGEIIPEVLGPVLDKRDGSE 395

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
             + FP  CP C +++         +     RC    +C AQ   RL++  SR A +I  
Sbjct: 396 TEWVFPENCPACGTKLA-----PQKEGDQDWRCPNTRSCPAQLAARLEYLASRKALDIGE 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++       S      +   AD+F L  +    ++      G  + S   L +++   
Sbjct: 451 LGEKAAADLISS----GVLEDEADLFDLDEQALLKSSVYTTQKGALNASGKKLLENLKTA 506

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R     R + +L IRHVG   AR+LA  + S +                   L     VG
Sbjct: 507 RQAEFWRVLVALSIRHVGPIAARALATRFGSMEVLRAA----------SVEELADTDGVG 556

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            IIA++  ++++   +   V+                 +  +E   +V TGTL+   R  
Sbjct: 557 TIIAESFKQWFEVDWHDNIVQKWTAAGVTMEEESSDKPAQTLEGITVVVTGTLENFTRDS 616

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+E +   G   S+ +S+KT+ ++VG+N GSK +KA+ LG+ I++EE F  LL+
Sbjct: 617 AKEAIITRGGKASSSVSKKTNYVVVGENAGSKEQKARDLGLTILDEEGFTRLLE 670


>gi|296126514|ref|YP_003633766.1| DNA ligase, NAD-dependent [Brachyspira murdochii DSM 12563]
 gi|296018330|gb|ADG71567.1| DNA ligase, NAD-dependent [Brachyspira murdochii DSM 12563]
          Length = 663

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 241/707 (34%), Positives = 383/707 (54%), Gaps = 48/707 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+A++++  L + I+YH+  YY    P I D EYD L R  + +   FP+L +    
Sbjct: 1   MNKEEAKQKIKQLTETINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKD--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P NK+GG +     K  H I   SL  + N E+   F  R+ R     D ++I +T+E
Sbjct: 58  DSPTNKVGGTILEKFEKFEHPIAMYSLSNVMNEEEFLDFDNRMQREL---DASNIKYTVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  + + YEKGK   A+ RGDG  GE+V+  ++ +  +P+ +       + VRGE 
Sbjct: 115 NKFDGLALELIYEKGKLTVASTRGDGQVGENVTNNVKMMSNVPKSIKEKNK--LIVRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
            I+K DF ALN E   +   P+AN RNAASG LR+L+  +   R L FF + +    +  
Sbjct: 173 LITKKDFEALNKEREELEEIPFANARNAASGGLRQLDSAESKKRRLKFFAYQIANYKDFD 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              +Y+ ++ +  LGF    GV        ++  Y +++  RS + Y+IDGLV KVD+  
Sbjct: 233 LTNEYKSMEFLSDLGF-TVEGVHPNIDAKKVLETYYDIQEKRSKMDYEIDGLVIKVDDVK 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  +R+PR+ ++ KF  ++  T L +I++Q+GRTG LTPVA+LEPV +GG  ++N
Sbjct: 292 YQEKLGFLSRAPRFAVAFKFKPEEKETVLKNIEVQVGRTGALTPVAKLEPVQVGGVTVSN 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            TLHN + IK            +DIR+GD V+V R+G+VIPK+  +++ +R  D++PF F
Sbjct: 352 VTLHNPNEIKS-----------KDIRIGDTVVVIRSGDVIPKITRVVLEKRPEDSKPFEF 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C                   RC     C ++    +++FVS+ A N+E +GK+ 
Sbjct: 401 PKKCPVCGGDTAVTDG------DVIVRCIN-EECPSKITRYIEYFVSKPAMNMERIGKEW 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +  F KS      ++ PAD++ + R               GD   + + +SI   +N +L
Sbjct: 454 IAVFTKS----GLVKTPADLYKITRDDLFKF------ERMGDKLASYMLESIENSKNTTL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +RFI++LGIR VG   A  LAKY+ S +NF +               L  +  +G+I A+
Sbjct: 504 KRFIYALGIRQVGETTADLLAKYFTSIENFKKA----------AIEDLQNIEGIGEISAK 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I +F  N R +  ++ LL      +      V S +  K +V TG+++   R  A+E  
Sbjct: 554 SIYDFLHNERTLKLIDDLLAAGVNPVFEKVVTVESPLTGKNVVITGSIEGFTRTSAKEAA 613

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +LGA V + +S+ TDI+IVG+  GSKL+KAQ LG+ IM  ++F+ L
Sbjct: 614 ERLGAAVQSAVSKNTDILIVGEKAGSKLKKAQDLGIAIMEADEFIKL 660


>gi|73748436|ref|YP_307675.1| DNA ligase, NAD-dependent [Dehalococcoides sp. CBDB1]
 gi|123759761|sp|Q3ZX08|DNLJ_DEHSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|73660152|emb|CAI82759.1| DNA ligase, NAD-dependent [Dehalococcoides sp. CBDB1]
          Length = 677

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 242/714 (33%), Positives = 375/714 (52%), Gaps = 57/714 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+ +L +EI+ H+  YY    P I D++YD L RR   +  A P+L     P+ P  K+G
Sbjct: 7   EVENLRREINRHNQLYYVQDNPEISDAQYDTLIRRLKELEEAHPELV---TPDSPTQKVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            E   +   V H  P LSL   ++  +L  +  R+ +      + S     EPK+DG  +
Sbjct: 64  AEPLKAFGIVNHPYPLLSLANAFSDTELEAWYQRVKKLLG---NISFQIDCEPKMDGLAV 120

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + Y  GKF   A RGDG  GE+++  +R I +IP     N P + EVRGEVY+SKN F 
Sbjct: 121 ALTYRNGKFATGATRGDGFQGENITRNLRTIHSIPLNAEPNAPPVFEVRGEVYLSKNGFA 180

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYEM 257
            LN E    G   +ANPRNAA+G LR+L+P+    R L+ F++ LG + + +     +++
Sbjct: 181 KLNRERADKGLPLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYSEDSLLPDSHWQI 240

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L     +GF +N   R  NT      YY +M + R++LPY+ DG+V+KVD  SLQ +LG+
Sbjct: 241 LDYFSKIGFRINPLNRLVNTMEEAKEYYRQMAANRASLPYEADGVVFKVDSVSLQHRLGD 300

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             R PRW I++KF  +Q  TRL  I I +GRTG L P A LEPVN+GG ++  A LHNED
Sbjct: 301 VGREPRWAIAYKFPAEQVMTRLKKIGISVGRTGTLNPFAVLEPVNVGGVVVKQAALHNED 360

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF---- 433
            I             +DIR GD V+++RAGEVIP+VV  ++++R+P+++PF         
Sbjct: 361 DI-----------LRKDIREGDTVIIQRAGEVIPEVVAPVLSKRNPESKPFRMEESLFNP 409

Query: 434 ------CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                 CP+C   + R           A      ++C AQ   +L+HFVSR A +I G+G
Sbjct: 410 NLNRPACPVCGGEIYRPAGE-------AMHYCTNVSCPAQFERQLEHFVSRGAMDIRGIG 462

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       +       ++  +D++ L      +T  +  +   G+ S  N+ D+I   + 
Sbjct: 463 ESLSVILAQQ----GLVKNVSDLYYL------TTADLLQLPRMGEKSADNIIDAIADSKT 512

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L+R IF LG+RHVG E A  L+++Y +    A+               L  +P +GD 
Sbjct: 513 RPLDRVIFGLGVRHVGNETATLLSRHYGNIWALAKTGLG----------ELQTIPDIGDK 562

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           IA +IV ++   +N+  +  L +     +  +   N +      + V TG L+   R +A
Sbjct: 563 IASSIVAYFSEEKNVAVIRRLEEAGVRLTSDQKPVNKNMPFSGMEFVVTGKLESFSREEA 622

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           QE +  LG      +++ T  ++VG + GSKL KA+ +GVK ++E +F+ +L+Q
Sbjct: 623 QEKIRSLGGTAKDNVTKATSYLVVGADAGSKLAKARSMGVKELSEREFINMLEQ 676


>gi|229496499|ref|ZP_04390213.1| DNA ligase, NAD-dependent [Porphyromonas endodontalis ATCC 35406]
 gi|229316396|gb|EEN82315.1| DNA ligase, NAD-dependent [Porphyromonas endodontalis ATCC 35406]
          Length = 671

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 212/709 (29%), Positives = 353/709 (49%), Gaps = 52/709 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
             + +  L  EI  H+  YY  S P+I D E+D L ++   +    P+L     P  P  
Sbjct: 4   VEERIEQLRSEIEQHNYRYYVLSTPLISDVEFDRLMQQLIDLEAQHPELI---TPTSPTQ 60

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G + N S   V HS+P LSL   +N +++R+F  R++       + S+    E K DG
Sbjct: 61  RVGSDRNPSFVSVRHSVPMLSLSNTYNYDEVREFWHRLH-----SGNGSLTLDCELKFDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISK 195
             I + Y  G+   A  RGDG  G+DV+  IR I +IP  L     P  +EVRGE+ +  
Sbjct: 116 LSIAVVYLNGELSQAITRGDGIEGDDVTNNIRTIRSIPLRLLGENIPPRVEVRGEILLPY 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
           ++F  +N + +A G+ P+ANPRNAASG L++L+ + ++             + +      
Sbjct: 176 DEFERINSQRLAEGKDPFANPRNAASGTLKQLDTSVVSERRLDAFFYYLLVNGLDIDSHA 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L   +  G  V++   Q +T   I ++ +   + R +LP+  DG+V KVD  +LQ+ +
Sbjct: 236 ERLHLAKSWGIKVSDYSAQCSTLEDIYAFIDHWDTARRSLPFATDGIVLKVDSLALQQTI 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+ PRW I++K+  ++AST+L+D+  Q+GRTGI+TPVA L P+ I G ++  ATLHN
Sbjct: 296 GFTAKGPRWAIAYKYQPERASTQLIDVSYQVGRTGIITPVANLAPILISGTVVRRATLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D+I  L           D+   D V V++ GE+IPK+  +  + R  DA P  FPS CP
Sbjct: 356 ADFILSL-----------DLHQKDYVYVEKGGEIIPKIAGVDKSLRQSDALPIVFPSTCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +++            + C   L C  Q    ++H+  R A +I    +       
Sbjct: 405 DCGTTLIKAEGE------VGYFCPNKLGCPMQIKGSIEHYTQRKAADITIGPET-----I 453

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
            +      ++   D++ L      S      + GF + +  NL  SI + ++      +F
Sbjct: 454 DALYSRGFVKSICDLYRLTADDILS------LDGFKECATGNLLGSIEQSKSRPFPAILF 507

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIR+VG  +A+ L + + S +   +               L  +  +G+ IA++IV F
Sbjct: 508 GLGIRYVGENVAKILTRTFNSIETLMEASQ----------EELQTIDGIGERIAESIVSF 557

Query: 616 YQNPRNICAVEALLKEVS----PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           + + RN   + AL +       P      + +S  +E K +V +GT  +  R +  + + 
Sbjct: 558 FADERNQKIIAALKEFGVTLSNPVEEGISEAISRPLEGKSIVISGTFSQHTRDEYTQIIE 617

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           QLG    + +S+KT  I+ G++ G SK EKA  LG+ +++E++FL L+ 
Sbjct: 618 QLGGKKVSSISQKTSFILAGEDMGPSKREKALSLGIPLLSEDEFLALVD 666


>gi|254976908|ref|ZP_05273380.1| DNA ligase [Clostridium difficile QCD-66c26]
 gi|255308381|ref|ZP_05352552.1| DNA ligase [Clostridium difficile ATCC 43255]
 gi|255316048|ref|ZP_05357631.1| DNA ligase [Clostridium difficile QCD-76w55]
 gi|255518705|ref|ZP_05386381.1| DNA ligase [Clostridium difficile QCD-97b34]
 gi|255651827|ref|ZP_05398729.1| DNA ligase [Clostridium difficile QCD-37x79]
 gi|306521614|ref|ZP_07407961.1| DNA ligase [Clostridium difficile QCD-32g58]
          Length = 674

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 224/707 (31%), Positives = 373/707 (52%), Gaps = 50/707 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             + E++ L + I+YH++ YY    P I D EYD L +   ++    P+L R    + P 
Sbjct: 2   SVKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRI---DSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           N++GG+      ++ H  P LSL   ++ +DLR F  R+  +  +    ++ + +E KID
Sbjct: 59  NRVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVEFKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y  G+F   A RGDG  GED+S  +  + +IP  L +N  + + VRGEVYISK
Sbjct: 115 GLSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
           ++F  +N++     +  +ANPRN A+G LR+L+P     R L+ FV  +    E   +  
Sbjct: 173 DNFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESH 232

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L+ +  LGF V+   +   +   ++ +       R  L Y+IDG+V KV+    + +
Sbjct: 233 SESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDE 292

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           +G  A+SPRW I++KF  ++  T+++DI +++GRTG +TP A LEPV + G  ++ ATLH
Sbjct: 293 MGYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLH 352

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NEDYI+            +DI++ D VLV++AG++IP+V+++I  ER  D   F  P  C
Sbjct: 353 NEDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKC 401

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C    +R          AA +C    +C AQ    + HFVSRDA NI+GLG+  +   
Sbjct: 402 PVCSEPTIRLEGE------AAVKCINM-SCPAQIRRGIIHFVSRDAMNIDGLGESIITLL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              +     I+  +D++ +++           +   G+ S  NL +SI K +   L R I
Sbjct: 455 LNEK----IIQDVSDLYYIKKEDVVD------LERMGEKSADNLINSIEKSKENDLWRLI 504

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             LGI+ +G + A+ LA  +          +            L  +   G I+A ++VE
Sbjct: 505 NGLGIKFIGVKAAKILAYNFKDLDEVISATS----------EQLEELEEFGSIMANSVVE 554

Query: 615 FYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           F++  +N+  +  L        S+    + V    E  K+V TGTL  ++R+ A++ + +
Sbjct: 555 FFKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKDMIEK 614

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL LL+
Sbjct: 615 RGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEERFLELLK 661


>gi|319789848|ref|YP_004151481.1| DNA ligase, NAD-dependent [Thermovibrio ammonificans HB-1]
 gi|317114350|gb|ADU96840.1| DNA ligase, NAD-dependent [Thermovibrio ammonificans HB-1]
          Length = 723

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 231/729 (31%), Positives = 378/729 (51%), Gaps = 57/729 (7%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           +     + LS E+AR+    L + I YHD  YY  + P+I D +YD L    +A+  A P
Sbjct: 24  KTEEDFKKLSTEEARELAEKLRRVIRYHDYKYYVQANPVISDYQYDKLFHALEALEKAHP 83

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           ++     P+ P  +I         KV H     SLE  ++ EDL+++  ++         
Sbjct: 84  EVV---TPDSPTQRISPAFTGEFQKVKHYAEMTSLENTYSPEDLKEWDRKVKELLG---T 137

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP--RVLSLNI 181
           +++ + +EPK DG  + + Y+    V  A RGDG  GED++  IR I +IP     S + 
Sbjct: 138 DTVEYIVEPKFDGASVELVYKNDILVRGATRGDGIYGEDITVNIRTIKSIPLKAPFSKHG 197

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-----YL 236
            E+I +RGEV + K+ F  LN+E    G   +ANPRNAA+G LR  NP ++ +     Y+
Sbjct: 198 IELISIRGEVIMPKSVFKKLNEEREKQGLTLFANPRNAAAGTLRLKNPAEVAKRGLDCYV 257

Query: 237 NFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
              ++   K      + Q E L+ +   GF      +       ++      +  R T  
Sbjct: 258 YQILYSEPKKLCTDIRTQKEALKLLAECGFKTPPIQKVCKNIEEVIETVLAAQEERETWD 317

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           ++ DG+V KV++    ++LGE    PRW +++KF  KQA T+L+D+  Q+GRTG LTPVA
Sbjct: 318 FEADGMVIKVNDICAWEKLGETLHHPRWAVAYKFPAKQAVTKLIDVVWQVGRTGALTPVA 377

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            LEPV +GG +++ ATL N D+IK            +DIR+GD V+V+RAGE IP +V  
Sbjct: 378 ILEPVEVGGVIVSRATLFNPDFIKS-----------KDIRIGDYVIVERAGETIPYIVGP 426

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           + + R  D +P   P  CP+C + +V++L+       A  RC   + C AQ  E L ++ 
Sbjct: 427 VKDRRKGDEKPVEVPKHCPVCGAPIVKELDE------AVPRC-PNINCPAQLKEHLVYWG 479

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
                +I+GLG+   +   K       ++  AD++ L+R           + G+G     
Sbjct: 480 --KVLDIKGLGESTANVLTKK----GLVKSIADLYYLKREDL------LKLSGWGLKKSE 527

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL + I K ++    + + +LGIRHVG + A+ LAK + + +               D+ 
Sbjct: 528 NLLNQIEKSKSAPFWKKLTALGIRHVGEKTAQLLAKRFKNIEELMNA----------DFT 577

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKL 652
            L  +P +G I A +I  F++  +N+  ++ L +             E+ +   +E +++
Sbjct: 578 ELASIPGIGPITATSIQNFFKAEQNVEMIKKLQEAGFKFERTQEEEQEEKLPKPLEGQRI 637

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           VFTG L+   R +AQ  V  LGA  +  +++KT  ++VG+NPGSK +KAQ+LG+K++NE+
Sbjct: 638 VFTGELEHFTRKEAQHVVELLGANPTNSVTKKTSFVVVGENPGSKFQKAQKLGIKMLNEK 697

Query: 713 QFLFLLQQY 721
           +F+ LL++Y
Sbjct: 698 EFIELLKRY 706


>gi|260175035|ref|ZP_05761447.1| DNA ligase [Bacteroides sp. D2]
 gi|315923266|ref|ZP_07919506.1| DNA ligase [Bacteroides sp. D2]
 gi|313697141|gb|EFS33976.1| DNA ligase [Bacteroides sp. D2]
          Length = 666

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 227/709 (32%), Positives = 356/709 (50%), Gaps = 51/709 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+     D N P 
Sbjct: 2   DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEYK---DENSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N +  +V H  P LSL   ++  ++  F  R+ +      +       E K D
Sbjct: 59  MRVGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKAL----NEDFEICCEMKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           GT I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ + 
Sbjct: 115 GTSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
              F  LN E  A     +ANPRNAASG L+  N + +                +   G 
Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGDNLPCDGH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK 
Sbjct: 235 YENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKN 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LH
Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-HPDAQPFSFPSF 433
           N D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F   
Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIVN 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S++VR          AAH C    AC  Q   +++HF+SR A NI+GLG + +D 
Sbjct: 404 CPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDM 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F++       I+  AD++ L             +   G+ S  N+   I + + +  ER 
Sbjct: 458 FYR----LRLIKNTADLYKLTADDIKG------LDRMGEKSAENIITGIAQSKTVPFERV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG  +A+ +AK + +  +  Q           D   L+ +  +G+ IAQ+I+
Sbjct: 508 IFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIAQSIL 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYV 670
            ++ N  N   V  L KE    + R E+++S    ++  + +V +G      R + +E +
Sbjct: 558 AYFANESNRELVAKL-KEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFVHHSRDEYKELI 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            + G      +S KT  I+ GDN G +KLEKA++LG+ I++E++FL L+
Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665


>gi|256826919|ref|YP_003150878.1| DNA ligase, NAD-dependent [Cryptobacterium curtum DSM 15641]
 gi|256583062|gb|ACU94196.1| DNA ligase, NAD-dependent [Cryptobacterium curtum DSM 15641]
          Length = 725

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 373/719 (51%), Gaps = 47/719 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
             +     + +L +EI ++   YY    P I D+ +D+L R    +    P+     DP 
Sbjct: 11  DQDDVGARIEALRREIEHNSWLYYAQDAPAISDAAFDSLMRELRQLEAEHPEF---YDPT 67

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG +      VTH+    SL+   ++++L  ++ R +          +    E 
Sbjct: 68  SPTQRVGGYVGEQFAAVTHAERMYSLDNAMDLDELDAWMDRTFEALG----TDVPLCCEL 123

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-------LNIPEII 185
           KIDG+ I + YE G+ + AA RGDG  GEDV+A IR +  +P  L         ++ E +
Sbjct: 124 KIDGSGIAVTYEDGRLMRAATRGDGVVGEDVTANIRTVRDVPLRLRAEALDALTDVEEAL 183

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           E+RGEVY+ K  F ALN      GR+ +ANPRNAA+G LR+ +PT    R L+ F +   
Sbjct: 184 ELRGEVYMPKKSFNALNAAADREGRQEFANPRNAAAGSLRQKDPTITAQRDLSTFTYATA 243

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             + +   GQ+E+L+ MR  GF VN  VR  ++   + ++  E    R +LPY+IDG+V 
Sbjct: 244 SNAALTLPGQWELLEWMRNAGFHVNPDVRLCHSRDEVRAFCKEALDKRQSLPYEIDGVVV 303

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++FSLQ +LG  AR+PRW I+ KF  ++ +T L DI +Q+GRTG LTPVA LEPV++ 
Sbjct: 304 KVNDFSLQDRLGFTARAPRWAIAFKFPPEEKTTLLRDITVQVGRTGALTPVAELEPVSVS 363

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G++++ ATLHNED ++            +D+RVGD V+V++AG+VIP+V+  +++ R  D
Sbjct: 364 GSVVSRATLHNEDEVRR-----------KDVRVGDTVIVRKAGDVIPEVLGPVLSLRPAD 412

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           AQP+  P+ CP C S VVR+         A  RC   L C AQ  ERL H+ SR A +IE
Sbjct: 413 AQPWHAPTSCPSCGSPVVREEG------GAILRCVS-LDCPAQAHERLIHWASRGALDIE 465

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPA-DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           G+G++ +    +S              + L         K    +  G      +   I+
Sbjct: 466 GMGEEVIGRLLESGRVVDVADYYHLTEYDLATLDMGRVNKDGEAIHLGSTVAAKIVGQID 525

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + ++    R +F LGIRHVG   A ++A+ Y S +   +               L  +  
Sbjct: 526 QSKHRGFARVLFGLGIRHVGKTTAEAIAQAYPSIEALREA----------KMDDLAAIEG 575

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTL--QK 660
           +G IIA+++  F + P+N+  ++ LL                  +     V TG+L    
Sbjct: 576 IGPIIAESLFVFLRTPQNVQVIDRLLAAGVVMEEAALTPRAPQTLSGLTFVLTGSLVQSG 635

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + R +A + +  +GA VS  +S KT  +I G+  GSK +KA  LGV +++E  FL +L+
Sbjct: 636 MTRTEAGDALKAMGAKVSGSVSGKTSFVIAGEAAGSKRDKAVSLGVPVIDEAAFLHILE 694


>gi|225620892|ref|YP_002722150.1| NAD-dependent DNA ligase LigA [Brachyspira hyodysenteriae WA1]
 gi|254781267|sp|C0QVE5|DNLJ_BRAHW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225215712|gb|ACN84446.1| NAD-dependent DNA ligase LigA [Brachyspira hyodysenteriae WA1]
          Length = 663

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 238/707 (33%), Positives = 385/707 (54%), Gaps = 48/707 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++IE+A++ +  L + I+YH+  YY    P I D EYD L R  + +   FP+L +    
Sbjct: 1   MNIEEAKQRIEQLTETINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKD--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P NK+GG +     K  H I   SL  + N E+  +F  R+ +   +   + I +T+E
Sbjct: 58  DSPTNKVGGTILEKFEKFEHPIAMYSLSNVMNEEEFLEFDNRMQKELNQ---SKIKYTVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  + + YEKGK   A+ RGDG  GE+V+  ++ +  +P+ +     + + VRGE 
Sbjct: 115 NKFDGLALELIYEKGKLTVASTRGDGQVGENVTNNVKMMSNVPKSIKE--KKKLIVRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
            I+K DF ALN E   +   P+AN RNAASG LR+L+  +   R L FF + +    +  
Sbjct: 173 LITKKDFEALNKEREELEEIPFANARNAASGGLRQLDSAESKKRRLKFFAYQIANYKDFD 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              +Y+ ++ +  LGF    GV        ++  Y +++  RS + Y+IDGLV KVD+  
Sbjct: 233 LTNEYKSMEFLSELGF-TVEGVHPNIDAKKVLETYYDIQEKRSKMDYEIDGLVIKVDDVK 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  +R+PR+ ++ KF  ++  T L +I++Q+GRTG LTPVA+LEPV +GG  ++N
Sbjct: 292 HQEKLGFLSRAPRFAVAFKFKPEEKETVLKNIEVQVGRTGALTPVAKLEPVQVGGVTVSN 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            TLHN + IK            +DIR+GD V+V R+G+VIPK+  +++ +R  D++PF F
Sbjct: 352 VTLHNPNEIKS-----------KDIRIGDTVVVIRSGDVIPKITRVVLEKRTADSKPFEF 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C                   RC     C ++    +++FVS+ A N+E +GK+ 
Sbjct: 401 PKKCPVCGGDTAVTDG------DVIVRCIN-EECPSKITRYIEYFVSKPAMNMERIGKEW 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +  F KS      ++ PAD++ + R               G+     + +SI   +N +L
Sbjct: 454 IAVFTKS----GLVKTPADLYKITRDDLFKF------ERMGEKLAGYMLESIENSKNTTL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +RFI++LGIR VG   A  LAKY+ S +NF +               L  +  +G+I A+
Sbjct: 504 KRFIYALGIRQVGETTADLLAKYFTSIENFKKAT----------IDDLQNIEGIGEISAK 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I +F  N + +  ++ LL      +      V S +  K +V TG+++   R+ A+E  
Sbjct: 554 SIYDFLHNEKTLKLIDDLLASGVNPVFEKVVTVESPLTGKNVVITGSIEGFTRNSAKEAA 613

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +LGA V + +S+ T+I+IVG+  GSKL+KAQ LGV+IM  ++F+ L
Sbjct: 614 ERLGATVQSAVSKNTNILIVGEKAGSKLKKAQDLGVEIMEADEFIKL 660


>gi|301299742|ref|ZP_07205992.1| DNA ligase (NAD(+)) [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852673|gb|EFK80307.1| DNA ligase (NAD(+)) [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 672

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 240/719 (33%), Positives = 396/719 (55%), Gaps = 55/719 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S +    EL  L  +++   + YY    P + DS YD   +R   +  A PDL  +   
Sbjct: 1   MSQKDIEMELKELRDKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     KV+H IP LSL  +++ E+L +F+ R+    ++K    + ++ E
Sbjct: 58  DSPSQRVGGKVLSGFTKVSHDIPMLSLGDVFSKEELIEFLERLENSVEQK----LDYSCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE GKF+  + RG+G  GED++  ++ I  IP  L+  +   IEVRGE 
Sbjct: 114 LKIDGLAISLTYENGKFIKGSTRGNGVIGEDITENLKTIKAIPMELNEPVS--IEVRGEC 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN +  A G+  +ANPRNAA+G LR+L+     +R L+ F++ L +  ++ 
Sbjct: 172 YMPKKSFVELNTKREAEGQAVFANPRNAAAGSLRQLDTKITASRNLSTFIYYLMEPEKLG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q E L K+   GF VNN  +Q  T   I +Y +E    R+ LPYDIDG+V K + F+
Sbjct: 232 IKTQTEALDKLESWGFKVNNESKQVKTKEEIFAYIDEATDQRANLPYDIDGIVLKAESFA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q Q+G   + PRW I++KF   +  T++LDI+  +GRTG++TP A +EPV + G  +  
Sbjct: 292 VQSQVGNTVKVPRWAIAYKFPPDEQETKVLDIEWTVGRTGVVTPTAVMEPVTLAGTTVAR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DY+K            +DIR+GD V + +AG++IP++ ++++ +R  D+  +  
Sbjct: 352 ASLHNPDYLK-----------EKDIRIGDTVKLHKAGDIIPEISEVVLAKRPEDSVEYQI 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C +++V   +        A RC     C A   E L HF SR+A +I GLG + 
Sbjct: 401 PTECPECGAKLVHLDDE------VALRCINPQ-CPALVKESLTHFTSRNAMDIRGLGPRI 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  +  E     I+  A I++L   Q  +      +  F + S  NL  +I+  RN S+
Sbjct: 454 IEQLYNRE----MIKDVAGIYSLTFEQLIT------LDKFKEKSANNLLTAIDNSRNNSI 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA++AR LA+ Y S  N A+               +  +  +G+II  
Sbjct: 504 ERLIFGLGIRHVGAKVARILAENYKSMDNLAKA----------KSDEISTIDSLGEIIGD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI-------GRHEKNVSSEIENKKLVFTGTLQKIQR 663
           ++  ++ +   +  ++ L +              + E +  S     ++V TGTL  ++R
Sbjct: 554 SVEMYFADEHVMELLDELRQAGVNMEFLGQTREEQLESSTDSSFNGLRVVLTGTLDTLKR 613

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +A+ ++   GA V+  +S+KTD++I G + GSKL KAQ+L V++MNE +F+  +++ +
Sbjct: 614 SEAKSWLEAHGAKVTGSVSKKTDLLIAGHDAGSKLTKAQELNVRVMNEAEFIQQMEEES 672


>gi|224476961|ref|YP_002634567.1| DNA ligase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254781419|sp|B9DMU3|DNLJ_STACT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222421568|emb|CAL28382.1| DNA ligase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 668

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 229/708 (32%), Positives = 373/708 (52%), Gaps = 53/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +    +  L   ++ +   YY    P + DSEYD L R    I +A P+       + 
Sbjct: 1   MAELATRVQELHHLLNKYSHEYYVQDNPSVPDSEYDKLLRELIDIENAHPEYK---TEDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   +  KV H  P LSL   +N E+LR+F  R+     K     + +  E K
Sbjct: 58  PTVRVGGEAQATFNKVRHDTPMLSLGNAFNEEELRRFDARVREKAGK-----VEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG  GED++A +R I  IP  L +N P   EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTIGEDITANLRTIRAIP--LRINKPLTFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            K  F  LN +    G + +ANPRNAA+G LR+L+      R L+ F++ +   +   A+
Sbjct: 171 PKKSFEHLNQQKEEAGEQAFANPRNAAAGSLRQLDSKLAAKRRLSIFLYSVNDFTNFHAE 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N   ++ +   G++ Y     + R  LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDELGFKTNQNRKRVSDIDGVLEYIKYWTAHREELPYDIDGIVIKVNDLEEQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EELGYTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAVLEPVRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             +DIR+GD V++K+AG++IP+V+  + + R    +P+  P+
Sbjct: 351 LHNEDLIH-----------EKDIRIGDSVVIKKAGDIIPEVIRSLPDRRPEGTEPYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E + HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRLDGE------VALRCINPK-CPAQLVEGMIHFVSRQAMNIDGLGTKIIM 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +++E     I+   D++ L +           +   G+    NL ++I   +  SLE 
Sbjct: 453 QLYENE----IIKDVGDLYYLTKDDL------LPLERMGEKKADNLLNAIEASKKNSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ +A+ + +     +               L+ +  +GD +A ++
Sbjct: 503 LLFGLGIRHLGVKASQVIAERFETMDRLFKVTE----------EELLEIHDIGDKLATSL 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           + +  N   I  +E L ++            E    SE   K +V TG L  + R +A +
Sbjct: 553 ITYLNNKDIIALIEKLRRKNVNMTYEGIKTSEIQTDSEFNGKTVVLTGKLHNMTRTEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++   GA  ++ +++ TD++I G++ GSKL KA++LG ++ +E++F+ 
Sbjct: 613 WLEAQGAKTTSSVTKNTDLVIAGEDAGSKLTKAEKLGTEVWSEDEFIQ 660


>gi|297583057|ref|YP_003698837.1| DNA ligase [Bacillus selenitireducens MLS10]
 gi|297141514|gb|ADH98271.1| DNA ligase, NAD-dependent [Bacillus selenitireducens MLS10]
          Length = 668

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 245/712 (34%), Positives = 387/712 (54%), Gaps = 54/712 (7%)

Query: 12  LSIEQ-ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           +S  Q  +K + +L + ++ +   YY   +P + D+EYD L +  + +  A P+L RS  
Sbjct: 1   MSENQDVQKRIDTLTETVNDYAHHYYVLDQPKVPDAEYDRLLQELEELEAAHPELKRS-- 58

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GGE      KV H IP LSL   +N E+LR F  R+          +  +++
Sbjct: 59  -DSPSERVGGEPLDHFRKVQHDIPMLSLSNAFNEEELRDFDRRVRDGLGV----NPTYSV 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  IT++YE G+FV  A RGDG +GED++  ++ IP+IP  L  ++   +EVRGE
Sbjct: 114 ELKIDGLAITLKYEAGEFVLGATRGDGTTGEDITRNLKTIPSIPLKLKESV--TLEVRGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI 249
            ++ K  F  LN+     G   +ANPRNAA+G LR+L+P     R L+ FV+ +G+    
Sbjct: 172 AFMPKASFNRLNEAREEKGEALFANPRNAAAGSLRQLDPKIAAKRNLDMFVYSVGQIEGK 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E L  +  LGF +N   +  N    +V Y N     R  L Y+IDG+V KVD  
Sbjct: 232 TIDSHTETLDYVSKLGFKINPEAKHCNGIEEVVDYVNSWLDRRGDLDYEIDGIVIKVDSL 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q++LG  A+SPRW  + KF  ++  T+L+DI++ IGRTG++TP A LEPV++ G  + 
Sbjct: 292 DHQEELGFTAKSPRWATAFKFPAEEVVTKLIDIELSIGRTGVVTPTAILEPVSVAGTTVQ 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHNED I+            +D+++GDRV +K+AG++IPKVV+++  +R    + FS
Sbjct: 352 RASLHNEDLIR-----------QQDVKIGDRVTIKKAGDIIPKVVNVLTEQRDGSEEDFS 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C+S +VR           A RC     C AQ  E L HF SRDA NI+GLG++
Sbjct: 401 MPEHCPACESELVRIDGE------VALRCVNP-ECPAQIREGLIHFASRDAMNIDGLGER 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +      E     +R  AD++ L++    +      +   G+ S TNL ++I   ++ S
Sbjct: 454 VITQLHSRE----LVRNVADLYRLEKEAIMA------LERMGEKSATNLVEAIEATKSNS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           LE+ +F LGIR VG++ A++LA ++ +     +           D  +LI V  +GD +A
Sbjct: 504 LEKLLFGLGIRFVGSKAAKTLAMHFETMDALMEA----------DKEALIAVDEIGDKMA 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRH 664
            +IV  ++ P     + AL                 +   S +  K +V TG++++  R 
Sbjct: 554 DSIVMAFEQPGMKHLIGALKDLGVNMTYTGPKRITAEESDSPLAGKTVVITGSMEQYSRK 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +A+  V   G  V+  +S+KTD++I G+  GSKL+KA +LG+++ +E +F+ 
Sbjct: 614 EAKTEVEARGGKVTGTVSKKTDLVIAGEKAGSKLDKANELGIEVWDEARFID 665


>gi|227535466|ref|ZP_03965515.1| DNA ligase (polydeoxyribonucleotide synthase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227186876|gb|EEI66943.1| DNA ligase (polydeoxyribonucleotide synthase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 674

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 235/717 (32%), Positives = 366/717 (51%), Gaps = 51/717 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A+ E+  L ++++     YY    P + D+ YD   R   A+  A+P L  
Sbjct: 5   PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAYPKLV- 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+         + + 
Sbjct: 64  --TPDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARMQSNVG----HPVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE GK V  + RGDG+ GEDV+  +  I ++P+ L   +   +EV
Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPKQLKQPLS--LEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE Y+ K  F  LN      G  P+ANPRNAA+G LR+L+      R L+ F++ L + 
Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +     Q+E +  M+ LGF  N     A     I +Y  +  + R  LPY IDG+V KV
Sbjct: 236 EQFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G 
Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V +R  D  
Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPADTP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   P  CP C  ++V   +        A RC   + C AQ  E+L HF SR+A NI+GL
Sbjct: 405 PAPIPEACPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +            ++  AD++ L             +  F + S+ NL  +IN  R
Sbjct: 458 GPKIVAQLQAK----HLVKDVADLYHLTAADL------AKLDKFKEKSINNLLSAINNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+ER IF LGIRHVG + AR LA+++    +                 ++  VP +G 
Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQ----------EAIADVPNIGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            IA+AIV +++       +  L +       +         S +  K +V TG   +  R
Sbjct: 558 TIAEAIVTYFKAATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFAEFSR 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               + +  LGA V+  +S+KTD++I GD  GSKL KAQ L V IMNE + L  L+ 
Sbjct: 618 PALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNVPIMNETELLANLKD 674


>gi|255102476|ref|ZP_05331453.1| DNA ligase [Clostridium difficile QCD-63q42]
          Length = 674

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 224/707 (31%), Positives = 373/707 (52%), Gaps = 50/707 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             + E++ L + I+YH++ YY    P I D EYD L +   ++    P+L R    + P 
Sbjct: 2   SIKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRI---DSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           N++GG+      ++ H  P LSL   ++ +DLR F  R+  +  +    ++ + +E KID
Sbjct: 59  NRVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVEFKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y  G+F   A RGDG  GED+S  +  + +IP  L +N  + + VRGEVYISK
Sbjct: 115 GLSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
           ++F  +N++     +  +ANPRN A+G LR+L+P     R L+ FV  +    E   +  
Sbjct: 173 DNFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESH 232

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L+ +  LGF V+   +   +   ++ +       R  L Y+IDG+V KV+    + +
Sbjct: 233 SESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDE 292

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           +G  A+SPRW I++KF  ++  T+++DI +++GRTG +TP A LEPV + G  ++ ATLH
Sbjct: 293 MGYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLH 352

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NEDYI+            +DI++ D VLV++AG++IP+V+++I  ER  D   F  P  C
Sbjct: 353 NEDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKC 401

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C    +R          AA +C    +C AQ    + HFVSRDA NI+GLG+  +   
Sbjct: 402 PVCSEPTIRLEGE------AAVKCINM-SCPAQIRRGIIHFVSRDAMNIDGLGESIITLL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              +     I+  +D++ +++           +   G+ S  NL +SI K +   L R I
Sbjct: 455 LNEK----IIQDVSDLYYIKKEDVVD------LERMGEKSADNLINSIEKSKENDLWRLI 504

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             LGI+ +G + A+ LA  +          +            L  +   G I+A ++VE
Sbjct: 505 NGLGIKFIGVKAAKILAYNFKDLDEVISATS----------EQLEELEEFGSIMANSVVE 554

Query: 615 FYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           F++  +N+  +  L        S+    + V    E  K+V TGTL  ++R+ A++ + +
Sbjct: 555 FFKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKDMIEK 614

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++EE+FL LL+
Sbjct: 615 RGGKATSSVSKSTTFVLAGEEAGSKLTKASDLGIKVIDEERFLELLK 661


>gi|239631844|ref|ZP_04674875.1| NAD-dependent DNA ligase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239526309|gb|EEQ65310.1| NAD-dependent DNA ligase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 674

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 235/717 (32%), Positives = 365/717 (50%), Gaps = 51/717 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A+ E+  L ++++     YY    P + D+ YD   R   A+  A+P L  
Sbjct: 5   PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKLV- 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+         + + 
Sbjct: 64  --TPDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARMQSNVG----HPVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE GK V  + RGDG+ GEDV+  +  I ++P+ L   +   +EV
Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPKQLKQPLS--LEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE Y+ K  F  LN      G  P+ANPRNAA+G LR+L+      R L+ F++ L + 
Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                  Q+E +  M+ LGF  N     A     I +Y  +  + R  LPY IDG+V KV
Sbjct: 236 ERFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G 
Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V +R  D  
Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPADTP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   P  CP C  ++V   +        A RC   + C AQ  E+L HF SR+A NI+GL
Sbjct: 405 PAPIPEVCPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +            ++  AD++ L             +  F + S+ NL  +IN  R
Sbjct: 458 GPKIVAQLQAK----HLVKDVADLYHLTAADL------AKLDKFKEKSINNLLSAINNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+ER IF LGIRHVG + AR LA+++    +                 ++  VP +G 
Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQ----------EAIADVPNIGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            IA+AIV +++       +  L +       +         S +  K +V TG   +  R
Sbjct: 558 TIAEAIVTYFKAATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFAEFSR 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               + +  LGA V+  +S+KTD++I GD  GSKL KAQ L V IMNE + L  L+ 
Sbjct: 618 PALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNVPIMNETELLANLKD 674


>gi|255009394|ref|ZP_05281520.1| putative DNA ligase [Bacteroides fragilis 3_1_12]
 gi|313147153|ref|ZP_07809346.1| DNA ligase [Bacteroides fragilis 3_1_12]
 gi|313135920|gb|EFR53280.1| DNA ligase [Bacteroides fragilis 3_1_12]
          Length = 665

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 223/706 (31%), Positives = 348/706 (49%), Gaps = 48/706 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L  ++  H+  YY  + P I D E+D L R    +    P+     D N P  
Sbjct: 3   VKEKIDQLRIQLHQHNYNYYVLNAPEISDKEFDDLMRELQTLEQEHPEYK---DENSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +      +       E K DG
Sbjct: 60  RVGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRVRKAL----NEDFEICCEMKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
           T I++ YE GK + A  RGDG  G+DV+  ++ I +IP VL  N  P++ E+RGE+ +  
Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGNNYPDVFEIRGEILMPW 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
             F  LN E  A     +ANPRNAASG L+  N   +                +   G Y
Sbjct: 176 EVFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPTDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ+    GF ++  +R+  T   +  + N     R  L    DG+V KV+    QK L
Sbjct: 236 ENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWNVERKNLNVATDGIVLKVNSLKQQKNL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNTVSYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I+GL           D+ +GD V V++ GE+IPK+  + V  R    +   F + CP
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDVAARFMIGEKVKFITHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F+
Sbjct: 405 ECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I   AD++ L      +      +   GD S  N+   I + + I  ER IF
Sbjct: 459 R----LDLIHNTADLYQLTTDDIKN------LDRMGDKSAENIIRGIMQSKEIPFERVIF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ +AK +                   D  +L+ +  +G+ IAQ+I+ +
Sbjct: 509 ALGIRFVGETVAKKIAKSFKDIVELENA----------DLETLVSIDEIGEKIAQSILNY 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           + N  N   ++ L           E       ++  + +V +G      R + ++ + + 
Sbjct: 559 FANDSNRKLIDRLKIAGLQLYRPEEDLSEHTDKLAGQSIVISGVFTHHSRDEYKDLIEKH 618

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           G      +S KT  I+ GDN G +KLEKA +LG+KIMNEE+FL L+
Sbjct: 619 GGKNVGSISAKTSFILAGDNMGPAKLEKANKLGIKIMNEEEFLKLI 664


>gi|86605509|ref|YP_474272.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-3-3Ab]
 gi|123765626|sp|Q2JW63|DNLJ_SYNJA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|86554051|gb|ABC99009.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-3-3Ab]
          Length = 673

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 231/700 (33%), Positives = 371/700 (53%), Gaps = 51/700 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  +    L   +      YY +  PI+ DS YD L R    +  A+P+L     P+ P 
Sbjct: 4   KLEQRARELRALLQKASIAYYVHDAPILEDSVYDRLYRELQELERAYPELI---TPDSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-KDDNSIFFTLEPKI 134
            ++G +       V+H IP  SLE  +N+E+L+++  R++R   +  ++  + +  E KI
Sbjct: 61  QRVGEKPAEQFPTVSHRIPLYSLENAFNLEELKEWQERLWRVLGRTPEEGELEYVCELKI 120

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYI 193
           DG  + + Y  G     A RGDG SGED++  IRAIP+IP    +   P ++EVRGE Y+
Sbjct: 121 DGAALALTYVDGLLQRGATRGDGQSGEDITPNIRAIPSIPLRLATAAPPPVLEVRGEAYL 180

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL----GKTSE 248
              +F  +N E  + G  P+ANPRN A+G LR+L+      R L+FF + L    G  S 
Sbjct: 181 PIAEFERINRERCSAGDPPFANPRNCAAGTLRQLDSRVVAARKLSFFAYALHWPEGWPSG 240

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q+E LQ+++ LG PVN   +       +V +Y   +  +   PY  DG+V K++ 
Sbjct: 241 DPPQTQWECLQRLKDLGLPVNPLSQVCRGLEEVVQFYERWRQAQL--PYACDGVVVKLNS 298

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ++ G   + PRW I+ K+  ++  TR+  I   +GRTG +TPVA LEPV + G  +
Sbjct: 299 LRLQEEAGFTQKFPRWAIALKYPAQEVPTRIRAIVASVGRTGAVTPVAELEPVLLAGTTV 358

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D ++ L           D+ +GD  +V++AGE+IP+VV I+   R PDA P+
Sbjct: 359 SRASLHNADRLEEL-----------DVHIGDTAIVRKAGEIIPEVVGILKELRPPDAVPY 407

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             PS CP C + +VR          A  RC    AC A+   +L+H+ SRDA +IEGLG+
Sbjct: 408 RLPSHCPECGTLLVRPAGE------AITRCPNP-ACPAKIRGQLQHWASRDAMDIEGLGE 460

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +++    +       +R  AD++ L          +E++ G G  S   L  +I + R  
Sbjct: 461 KRVAQLVEK----LGVRTVADLYRLTPE------HLESLEGMGSRSSQKLVQAIQRSRQQ 510

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
             ER ++ LGI HVG   A+ LA+++ + +  AQ               + ++  +G  I
Sbjct: 511 PWERVLYGLGIPHVGVVTAQILAQHFPAPELLAQAR----------AEDIAQIYGIGAEI 560

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKAQ 667
           A+A+V ++ +P +   ++ L +   P++ R     VS  +  KK V TGTL  + R +A+
Sbjct: 561 AEAVVAWFADPAHQKLLQELRELGIPALPRQAAPAVSQVLAGKKFVITGTLPTLSRQQAK 620

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
            ++   G  V+A +SR+TD ++VG +PGSKL++AQ LG+ 
Sbjct: 621 AWIESRGGKVTASVSRQTDYVVVGSDPGSKLKQAQALGIP 660


>gi|315641089|ref|ZP_07896168.1| NAD-dependent DNA ligase LigA [Enterococcus italicus DSM 15952]
 gi|315483097|gb|EFU73614.1| NAD-dependent DNA ligase LigA [Enterococcus italicus DSM 15952]
          Length = 671

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 221/712 (31%), Positives = 370/712 (51%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            +   +++  L+++++ +   YY   +P++ D+ YD L ++  A+  A P+    +  + 
Sbjct: 2   KQTVAEQIHDLQKKLTEYAYAYYVKDQPVVDDAYYDQLYQQLVALETAHPEY---QTSDS 58

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG +     KV H IP  SL  +++  ++  F  R+ +       +++ +  E K
Sbjct: 59  PTQRVGGVVRKGFEKVVHEIPLYSLNDVFSKAEIIAFDQRVQKTLG----HAVSYICELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+++YE G+ V  A RGDG  GE+++   + + +IP  L+  I   IEVRGE Y+
Sbjct: 115 IDGLSISLKYENGRLVRGATRGDGTIGENITDNSKTVKSIPLTLTEPI--DIEVRGECYM 172

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            K  F+ LN +    G   +ANPRNAA+G +R+L+     +R L+ F++ L     +   
Sbjct: 173 PKASFIQLNQKREEEGLDIFANPRNAAAGSIRQLDSKVTASRNLSTFLYTLADFGPLHVT 232

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L  +  LGF  N      +T   + +Y       RS LPY+IDG+V KV++FS Q
Sbjct: 233 NQAEALTHLDDLGFRTNQERAVCSTIDDVWAYIESFHDKRSQLPYEIDGVVIKVNDFSDQ 292

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            QLG   ++PRW +++KF  ++A T + +I+  +GRTG++TP A + PV + G  +  A+
Sbjct: 293 NQLGFTVKAPRWAVAYKFPPEEAQTTIEEIEWTVGRTGVVTPTAVMTPVRVAGTTVARAS 352

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DYIK            +DIR+ D+V++ +AG++IP+V  +I   R   +QP++ P+
Sbjct: 353 LHNADYIKM-----------KDIRLHDQVVIYKAGDIIPEVAHVIEEARDSASQPYTIPT 401

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S +V            A RC     C A   E + HFVSRDA NIEG+G + ++
Sbjct: 402 NCPVCGSELVHLDEE------VALRCINPK-CPALLKEGISHFVSRDAMNIEGIGPRMIE 454

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF        +   AD++ L   Q  +      I    + S TN+  +I   +  SLE+
Sbjct: 455 QFFNH----GFVEDVADLYRLTLDQLLT------IDKVKEKSATNMLQAIEASKQNSLEK 504

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRHVG + A+ LA+ + +    +Q               ++ V  +G  IA ++
Sbjct: 505 LLFGLGIRHVGVKAAKLLAERFETLTQLSQAT----------VEEILTVATIGPTIADSL 554

Query: 613 VEFYQNPRNICAVEALLKEVSPS-----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           V ++ N      +  L              +    + S  + K +V TG LQ   R +A+
Sbjct: 555 VTYFANEEVHELMTELKAAGVNETYLGLKSQDVAEIESAFQGKTVVLTGKLQTYTRDQAK 614

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + + +LG  ++  +S+KTD++I G + GSKL KAQ L + +  EE+ +  L+
Sbjct: 615 KRIEELGGTITGSVSKKTDLVIAGADAGSKLTKAQALDIPVWTEEEMIAALE 666


>gi|307297347|ref|ZP_07577153.1| DNA ligase, NAD-dependent [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916607|gb|EFN46989.1| DNA ligase, NAD-dependent [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 665

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 234/709 (33%), Positives = 378/709 (53%), Gaps = 47/709 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+ARK +  L +EI YH   YY    P I DSEYD L R    +   +P+L     P
Sbjct: 2   ITFEEARKRIDELRKEIDYHAYRYYVLDDPEIPDSEYDNLLRTLIDLEEQYPELK---TP 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G +   S  +V H     SL+  ++ E++ +F  R+    Q +    + +  E
Sbjct: 59  DSPSIRVGLKPVASFKEVVHEYRLFSLDNTYSEEEVLQFDRRVREELQIEI---VRYMCE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I+++Y+ G  V  A RG+G  GEDV+  IRAI +IP  L  ++   +EVRGEV
Sbjct: 116 LKIDGLSISVKYDNGLLVRGATRGNGFVGEDVTENIRAIKSIPLRLRQDLS--VEVRGEV 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+ K+ F  +N        + +ANPRNAA+G LR+L+P +   R LN F + + + S++ 
Sbjct: 174 YLPKDVFYEINRARSKGELQVFANPRNAAAGTLRQLDPREVAKRRLNAFFYHVVEPSKLQ 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q E LQ ++ +G  V      A    G+++++ +    +S+L Y +DG V KVD+  
Sbjct: 234 LKSQNEQLQFLKSIGMRVEPNSELAEGTDGVIAFWKKWSESKSSLNYAVDGTVVKVDDLY 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG   ++PRW I+ KF  +QA T+L+ +   +GRTG +TPVA LEPV + G  +  
Sbjct: 294 AQEELGYTTKAPRWAIAFKFPAEQAMTKLIKVTFGVGRTGTITPVAELEPVQLAGTTVKR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A++HN D+I             +DIR+ D V+V++AGE+IP++V  I  +R    +  + 
Sbjct: 354 ASMHNFDFI-----------SEKDIRLFDIVIVQKAGEIIPQIVRSIPEKRTGKEKRITP 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C   V R+             C   L+       R++ F SRDA +IEGLG++ 
Sbjct: 403 PSRCPVCGGEVGREKEEDVALKCLNPTCPAKLS------RRIQFFCSRDAMDIEGLGEK- 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                +    A  ++ P+D++ L +    S        G G+ + +NL ++I K R+  L
Sbjct: 456 ---LVERIVEAGLVKNPSDLYKLNKDDLLSLG-----EGIGEKTASNLIEAIQKSRSNPL 507

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + I  LGI  VG++ ++ LA Y+ S +               D   L  V  +G+ +A+
Sbjct: 508 FKLITGLGIPGVGSKTSKDLANYFGSLRGLVSA----------DEKELRNVSGIGEQLAK 557

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I  ++ +P     VE LLK V+          S  ++  K V TGTL    R + QE +
Sbjct: 558 DIKRYFSSPEVKKEVEELLKYVNIKDEDSP--GSKPLKGMKFVVTGTLPGYSRKEIQEKI 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +LG  V++ +S+ TD +++G+NPGSK +KA+ LG+KI++E  F  +++
Sbjct: 616 IKLGGEVASSVSKNTDFLLLGENPGSKEQKARDLGIKIIDERDFEEMIK 664


>gi|325956253|ref|YP_004286863.1| DNA ligase [Lactobacillus acidophilus 30SC]
 gi|325332818|gb|ADZ06726.1| DNA ligase [Lactobacillus acidophilus 30SC]
          Length = 667

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 208/714 (29%), Positives = 366/714 (51%), Gaps = 50/714 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +++++A+KE +SL  +++   D YY    P + D+ YD    R   +   FP++   
Sbjct: 1   MAEITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GG+++    KV H IP LS+  +++ E+L++F  R+ +       + + +
Sbjct: 59  -TPDSITQRVGGQIDNDFTKVEHPIPMLSMGDVFSKEELKEFDQRMQKLVG----HPVEY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ YE GK V A+ RG+G+ GEDV+A    I  IP+ L   +    EVR
Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAHYIADIPQTLPEPL--TTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN+E    G   +ANPRNAA+G LR+L+P    +              
Sbjct: 172 GECYMGKEAFAKLNEEREEQGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ +++M  LGF  N   R+  T   I  + +E  + R++L Y IDG+V K+D+
Sbjct: 232 EGITSQHQAIERMHELGFHTNETGRKLATLDEIFDFIDEYTAKRNSLTYGIDGIVLKIDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  +
Sbjct: 292 LNIEQELGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN DY+             + +R+GD V + +AG++IP++ ++++ +R  D++P+
Sbjct: 352 ARASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLAKRPADSEPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG 
Sbjct: 401 KIPDTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +      +     +   AD++ L             +  F + S+ NL  +I+  ++ 
Sbjct: 454 KIVKQLIAKD----LVHNVADLYHLTADDL------AELDHFKEKSINNLLTAIDNSKSN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  I  LGI HVGA+ AR +A+ + +                     +  +  +G  I
Sbjct: 504 SVELLITGLGIDHVGAKAARLIAQKFKNLSKIMA----------QGVQDIASIDTIGMTI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+++  ++  P     +E L +            E    +  ++K +V TG L+   R +
Sbjct: 554 AESMTTYFAQPEVQKLIEELRESGLNMDYLGEDEEAAPDNPFKDKTVVLTGKLEHYTRSE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             + +  LGA V+  +S+KT+ +I G + GSK  KA+QLG+ ++ EE+ +  ++
Sbjct: 614 FTKKLQALGAKVTGSVSKKTNYVIYGKDAGSKYNKAEQLGIPLLTEEEAIAQIE 667


>gi|327183069|gb|AEA31516.1| DNA ligase [Lactobacillus amylovorus GRL 1118]
          Length = 667

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 208/714 (29%), Positives = 366/714 (51%), Gaps = 50/714 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +++++A+KE +SL  +++   D YY    P + D+ YD    R   +   FP++   
Sbjct: 1   MAEITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GG+++    KV H IP LS+  +++ E+L++F  R+ +       + + +
Sbjct: 59  -TPDSITQRVGGQIDNDFTKVEHPIPMLSMGDVFSKEELKEFDQRMQKLVG----HPVEY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ YE GK V A+ RG+G+ GEDV+A    I  IP+ L   +    EVR
Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAHYIADIPQTLPEPL--TTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN+E    G   +ANPRNAA+G LR+L+P    +              
Sbjct: 172 GECYMGKEAFAKLNEEREEQGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ +++M  LGF  N   R+  T   I  + +E  + R++L Y IDG+V K+D+
Sbjct: 232 EGITSQHQAIERMHELGFHTNETDRKLATLDEIFDFIDEYTAKRNSLTYGIDGIVLKIDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  +
Sbjct: 292 LNIEQELGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN DY+             + +R+GD V + +AG++IP++ ++++ +R  D++P+
Sbjct: 352 ARASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLAKRPADSEPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG 
Sbjct: 401 KIPDTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +      +     +   AD++ L             +  F + S+ NL  +I+  ++ 
Sbjct: 454 KIVKQLIAKD----LVHNVADLYHLTADDL------AELDHFKEKSINNLLTAIDNSKSN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  I  LGI HVGA+ AR +A+ + +                     +  +  +G  I
Sbjct: 504 SVELLITGLGIDHVGAKAARLIAQKFKNLSKIMA----------QGVQDIASIDTIGMTI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+++  ++  P     +E L +            E    +  ++K +V TG L+   R +
Sbjct: 554 AESMTTYFAQPEVQKLIEELRESGLNMDYLGEDEEAAPDNPFKDKTVVLTGKLEHYTRSE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             + +  LGA V+  +S+KT+ +I G + GSK  KA+QLG+ ++ EE+ +  ++
Sbjct: 614 FTKKLQALGAKVTGSVSKKTNYVIYGKDAGSKYNKAEQLGIPLLTEEEAIAQIE 667


>gi|315037778|ref|YP_004031346.1| DNA ligase [Lactobacillus amylovorus GRL 1112]
 gi|312275911|gb|ADQ58551.1| DNA ligase [Lactobacillus amylovorus GRL 1112]
          Length = 667

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 208/714 (29%), Positives = 366/714 (51%), Gaps = 50/714 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +++++A+KE +SL  +++   D YY    P + D+ YD    R   +   FP++   
Sbjct: 1   MAEITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GG+++    KV H IP LS+  +++ E+L++F  R+ +       + + +
Sbjct: 59  -TPDSITQRVGGQIDNDFTKVEHPIPMLSMGDVFSKEELKEFDQRMQKLVG----HPVEY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ YE GK V A+ RG+G+ GEDV+A    I  IP+ L   +    EVR
Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAHYIADIPQTLPEPL--TTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN+E    G   +ANPRNAA+G LR+L+P    +              
Sbjct: 172 GECYMGKEAFAKLNEEREEQGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ +++M  LGF  N   R+  T   I  + +E  + R++L Y IDG+V K+D+
Sbjct: 232 EGITSQHQAIERMHELGFHTNETGRKLATLDEIFDFIDEYTAKRNSLTYVIDGIVLKIDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  +
Sbjct: 292 LNIEQELGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN DY+             + +R+GD V + +AG++IP++ ++++ +R  D++P+
Sbjct: 352 ARASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLAKRPADSEPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG 
Sbjct: 401 KIPDTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +      +     +   AD++ L             +  F + S+ NL  +I+  ++ 
Sbjct: 454 KIVKQLIAKD----LVHNVADLYHLTADDL------AELDHFKEKSINNLLTAIDNSKSN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  I  LGI HVGA+ AR +A+ + +                     +  +  +G  I
Sbjct: 504 SVELLITGLGIDHVGAKAARLIAQKFKNLSKIMA----------QGVQDIASIDTIGMTI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+++  ++  P     +E L +            E    +  ++K +V TG L+   R +
Sbjct: 554 AESMTTYFAQPEVQKLIEELRESGLNMDYLGEDEEAAPDNPFKDKTVVLTGKLEHYTRSE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             + +  LGA V+  +S+KT+ +I G + GSK  KA+QLG+ ++ EE+ +  ++
Sbjct: 614 FTKKLQALGAKVTGSVSKKTNYVIYGKDAGSKYNKAEQLGIPLLTEEEAIAQIE 667


>gi|229551868|ref|ZP_04440593.1| DNA ligase (NAD(+)) [Lactobacillus rhamnosus LMS2-1]
 gi|258539286|ref|YP_003173785.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus Lc 705]
 gi|229314812|gb|EEN80785.1| DNA ligase (NAD(+)) [Lactobacillus rhamnosus LMS2-1]
 gi|257150962|emb|CAR89934.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus Lc 705]
          Length = 674

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 243/716 (33%), Positives = 372/716 (51%), Gaps = 51/716 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A  E++ L ++++     YY    P + D+ YD   R   A+  AFP L  
Sbjct: 5   PAAQFTLEEAEAEIAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFPKLV- 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+         +++ 
Sbjct: 64  --TPDSPTQQVGDVINSDFAKVRHPIPMLSMGDVFSFEELSEWDARMQANVG----HAVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE G+ V  + RGDG+ GEDV+  +  I ++P   +L  P  +EV
Sbjct: 118 YNVELKIDGLALSLIYENGRLVQGSTRGDGNIGEDVTKNVLTIASVP--KTLKRPLSLEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE Y+ K  F  LN    A G  P+ANPRNAA+G LR+LNP     R L+ F++ L   
Sbjct: 176 RGECYMPKAAFAKLNARKEADGDTPFANPRNAAAGSLRQLNPKITAGRELDTFIYTLIDA 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K Q+E +  M+ LGF  N     A+    I +Y  +  S R  LPY IDG+V KV
Sbjct: 236 DRFNVKTQHEAIAFMQDLGFTTNPSSEVASDMQAIDAYITKYTSDRDALPYGIDGIVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G 
Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAKTVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V +R  +  
Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVKKRPANTP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   P  CP C  ++V   +        A RC   + C AQ  E+L HF SR+A NI+GL
Sbjct: 405 PAPIPEECPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +      +     +   AD++ L           E +  F + S+ NL ++IN  R
Sbjct: 458 GPKIIAQLQAKK----LVTDVADLYRLTATDL------EKLDKFKEKSINNLLNAINNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+ER IF LGIRHVG + AR LA+++ S                 D   +  +P +G 
Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGSLDELMAA----------DQDQVAAIPNIGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            IA+A+V +++       VE L         +         S +  K +V TG   +  R
Sbjct: 558 TIAEAVVTYFKTDTVKKLVEQLRSAGVNLRYTGPTRPAVSDSFVSGKTVVITGKFAEFSR 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  + + QLGA V+  +S+KTD++I GD  GSKL KAQ L V IM+E   L  L+
Sbjct: 618 PELTKRLEQLGAKVTGSVSKKTDLVIAGDAAGSKLTKAQDLNVPIMDETALLTNLK 673


>gi|308176651|ref|YP_003916057.1| DNA ligase [Arthrobacter arilaitensis Re117]
 gi|307744114|emb|CBT75086.1| DNA ligase [Arthrobacter arilaitensis Re117]
          Length = 767

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 226/772 (29%), Positives = 376/772 (48%), Gaps = 70/772 (9%)

Query: 1   MKKRQLIPIEALS--IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
           + ++ + P+E  +   E  +     L ++I  H D YYQ   P++ D EYDAL      +
Sbjct: 10  VSEKDVAPVETTNVPPEADKTRYDQLVEQIRAHRDAYYQNDAPLVSDVEYDALFHELQLL 69

Query: 59  AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RF 117
              +P LA     + P  ++GGE++ +   VTH+    SLE ++++++L  ++ R     
Sbjct: 70  EATYPILAGQ---DSPTQEVGGEVSAAFASVTHASRMYSLEDVFSLDELEAWLERAQANA 126

Query: 118 WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177
            +      + +  E KIDG  + + Y  GK V AA RGDG +GEDV+     I  IP+ L
Sbjct: 127 ERLHPQTPVRWLCEVKIDGLALNLTYRDGKLVRAATRGDGTTGEDVTHNALTISDIPQQL 186

Query: 178 SLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRY 235
             +  P   EVRGEV+I+  DF   N+ +IA G+ P ANPRNAA+G LR+ +P     R 
Sbjct: 187 EGSGWPAEFEVRGEVFIATEDFNKFNEALIAQGKAPLANPRNAAAGSLRQKDPAQTAKRP 246

Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           L  FVHGLG++ +     Q +  + MR  G PV+   R  ++      Y  E    R  L
Sbjct: 247 LRMFVHGLGRSRDFKLTEQSQAYELMRGWGLPVSPYGRVVDSRQAAKDYIAEHGEKRHDL 306

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            +DIDG+V KVD+ + Q+QLG  +R PRW +++K+  ++  T+LLDI +Q+GRTG +TP 
Sbjct: 307 IHDIDGIVIKVDDLATQEQLGYTSRVPRWAVAYKYPPEEVHTKLLDIQVQVGRTGRVTPF 366

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
             +EPV + G+ +  ATLHN++ +K            +++++GD +++++AG+VIP++V 
Sbjct: 367 GVMEPVLVAGSTVARATLHNQEVVK-----------AKNVKIGDTIILRKAGDVIPEIVG 415

Query: 416 IIVNERHPDA--QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
            ++  R  +   + F  P+ CP C   +         +     RC    +C AQ  ER+ 
Sbjct: 416 PVLPLREGNDELRDFIMPTECPSCGQPLA-----PAKEGDVDIRCLNAESCPAQLTERVA 470

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDP-------------AFSIRIPADIFTLQRRQ--- 517
           +   R A +IE LG +                           ++  A++F L+ +    
Sbjct: 471 YLGGRSALDIEALGYEAAAALTSGPGEDPATLGGIILPAGPGPLKNEAELFNLKDKLEEL 530

Query: 518 -----------------------QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                                     +            S   L D + K ++  L R +
Sbjct: 531 GEVKVWREKRVKGEGTGKFELVPYFYSKATAKKPSAPTKSTMKLLDELEKAKDNPLWRVL 590

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +L IRHVG   +R++A  Y S     + ++     + +    L  +  VG IIA+A+V+
Sbjct: 591 VALSIRHVGPNASRAIATRYGSMDALLEVLD-----SGNAEAELSEIDSVGSIIAEALVD 645

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +++   +   V +            ++N++  +E   +V TGTL+   R  A+E +   G
Sbjct: 646 WFKVDWHREIVASWQAAGVKMQDEQDENITKNLEGLAIVVTGTLENYSRDTAKEAIIVRG 705

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
              +  +S+KTD ++ G+  GSKL+KAQ LGV +++E  F  LL+Q     R
Sbjct: 706 GKATGSVSKKTDFLVAGEAAGSKLDKAQSLGVPVLDEAGFGVLLEQGPDAAR 757


>gi|42521704|ref|NP_967084.1| DNA ligase [Bdellovibrio bacteriovorus HD100]
 gi|81618744|sp|Q6MRL9|DNLJ_BDEBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|39574234|emb|CAE77738.1| DNA ligase [Bdellovibrio bacteriovorus HD100]
          Length = 684

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 242/709 (34%), Positives = 372/709 (52%), Gaps = 53/709 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K    L++ IS HD  Y+   KP I D EYD L      I    P     +  + P  +
Sbjct: 21  KKRHEELKKIISEHDHNYHVLDKPTITDYEYDQLFAELLDIE-KNP--KGLDLSDSPSQR 77

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H +P LSL   ++ ED+ +F  R+ +F   +D   + +  E K DG 
Sbjct: 78  VGGTVLEGFTKAQHRLPMLSLANSYSPEDIFEFDERVRKFLNTED--PVEYLCELKFDGL 135

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKN 196
            + + YE G+ V A  RGDG  GEDV+  I+ I +IP      N P ++EVRGEV + K 
Sbjct: 136 SMELIYENGQLVRAITRGDGTVGEDVTHNIKTIKSIPLKLSHKNPPPLLEVRGEVLMFKE 195

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAKGQY 255
           DF  LN+     G++ +ANPRNAA+G +R+L+          FF + LG         Q 
Sbjct: 196 DFARLNETQQENGQQTFANPRNAAAGTVRQLDSRIAASRPLRFFGYALGAVEGETFNTQK 255

Query: 256 EMLQKMRCLGFPVNNGVR-----QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + +     G P     +      A     +V YY+ ++ +R  LP+DIDG+V KV+   
Sbjct: 256 NIQEYFNDHGIPTVLPYKEDLLVVAKGPEEVVKYYHHIEKVRPKLPFDIDGVVIKVNSLR 315

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+ LG  ARSPRW  + KF  +QA T + DI +Q+GRTG LTPVA ++PV +GG  +TN
Sbjct: 316 LQEDLGLVARSPRWATAAKFKPEQAQTTVEDIVVQVGRTGALTPVAIMKPVKVGGVTVTN 375

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI-IVNERHPDAQPFS 429
           ATLHN+D I             +DIR+GD V+++RAG+VIP+VV++   ++R  D  P+S
Sbjct: 376 ATLHNQDEITR-----------KDIRIGDTVIIQRAGDVIPEVVEVVNPDKRPADRLPYS 424

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C S  V+             RC   L C A   E LKHFV+R A NI+ +G +
Sbjct: 425 IPERCPACDSVAVKAEGE------VVTRCVNPL-CIAVVKESLKHFVARRAMNIDKVGDR 477

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++    ++     +   +D + L + Q  S      +   GD S  N+  SI   +N +
Sbjct: 478 LIETLVDNK----LLTRFSDFYRLTKEQILS------LERQGDKSADNIIKSIENSKNPT 527

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L RFIF+LGIR VG +  + LA ++L+   F +               L++VP +G  +A
Sbjct: 528 LARFIFALGIRFVGEQTGKHLADHFLTIDKFLEASE----------EELLQVPEIGAKVA 577

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++I ++  NP+ +  V+A++ E+   I    +     +     + TGTL  ++R  A++ 
Sbjct: 578 KSIRDWTGNPKLVDEVKAMI-ELGVKIAGPVRAQEGSLSGMSFLITGTLP-VKRDDAKDL 635

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + + G  +   +S K + ++VGD+PGSK+EKAQ LGVKI++ E+   ++
Sbjct: 636 IERNGGKILGSVSSKLNYLVVGDDPGSKVEKAQGLGVKIISWEELQAMI 684


>gi|56962859|ref|YP_174586.1| NAD-dependent DNA ligase LigA [Bacillus clausii KSM-K16]
 gi|81366743|sp|Q5WJ30|DNLJ_BACSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56909098|dbj|BAD63625.1| DNA ligase [Bacillus clausii KSM-K16]
          Length = 671

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 231/696 (33%), Positives = 359/696 (51%), Gaps = 53/696 (7%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90
           +   YY    P + DSEYD L      +   +PDL      + P  +IGG    S  KV 
Sbjct: 20  YGYHYYVLDTPKVPDSEYDRLMNELLQLEADYPDLV---TEDSPSVRIGGPPAPSFKKVA 76

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
           H +P +SL   +N EDLR F  R+ +   +     + +  E K DG  +++ YE GK V 
Sbjct: 77  HRVPMMSLSNAFNEEDLRAFDRRVRQAVGEH----VSYVCELKFDGLAVSLTYENGKLVR 132

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
            A RGDG  GED++  +R +P IP  L       IEVRGE Y+ K  F  LN+     G 
Sbjct: 133 GATRGDGTIGEDITNNLRTVPAIPLRLKQPYS--IEVRGEAYMPKASFERLNEAKEQAGE 190

Query: 211 KPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269
           + +ANPRNAA+G LR+L+P     R L+ F + +G+      +  ++ L  ++ LGF VN
Sbjct: 191 EKFANPRNAAAGSLRQLDPKIAAKRNLSLFAYSIGEVEGKNVQTHFDSLMFLKELGFKVN 250

Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
               +  T   +++Y  +    R  LPY+IDG+V KV+  +  ++LG  A+SPRW  + K
Sbjct: 251 EEAAECETIEDVIAYTEKWSERRHELPYEIDGVVVKVNSLADHEKLGFTAKSPRWATAFK 310

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389
           F  ++  T L DI++ +GRTG++TP A L+PV + G  +  A+LHNED I+         
Sbjct: 311 FPAEEVLTVLRDIELNVGRTGVVTPTALLDPVLVAGTTVRRASLHNEDLIR--------- 361

Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449
              +D+++GD V+VK+AG++IP+VV ++ ++R  +   F  P+ CP C S + R      
Sbjct: 362 --EKDVKLGDTVIVKKAGDIIPEVVGVLTDKRTGEEVDFHMPTECPECHSVLERLEGE-- 417

Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509
                A RC     C AQ  E L HFVSR+A NI+GLG++ +   F  +  A        
Sbjct: 418 ----VALRCLNPK-CPAQIREGLIHFVSRNAMNIDGLGEKVISQLFLHQLIA-------- 464

Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569
              +         ++  +   G+ SV NL  +I   +  SLER +F LGIR VGA+ A++
Sbjct: 465 --DVADLYLLEREELLQLERMGEKSVDNLLAAIEASKENSLERLLFGLGIRFVGAKAAKT 522

Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
           LA  + + +   +            +  L+ V  +G+ +A +IV ++Q P     +E L 
Sbjct: 523 LAYEFETMERLQEAT----------FEQLLAVNEIGEKMADSIVSYFQKPEVATLLEKLA 572

Query: 630 KEVSPSIGRHEKNVS-----SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
                      K  +          K +V TG L +  R +AQE +  LG  V+  +S+K
Sbjct: 573 NAGVNMTYTGPKKAAIAEEAGVFAGKTVVLTGKLSQWTRKEAQEKIEALGGTVTGSVSKK 632

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           TD+++ G++ GSK +KA+ +G++I  EEQF   ++Q
Sbjct: 633 TDLVVAGEDAGSKQKKAESIGIEIWTEEQFTQAVEQ 668


>gi|319951546|ref|ZP_08025350.1| NAD-dependent DNA ligase LigA [Dietzia cinnamea P4]
 gi|319434794|gb|EFV90110.1| NAD-dependent DNA ligase LigA [Dietzia cinnamea P4]
          Length = 726

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 212/724 (29%), Positives = 347/724 (47%), Gaps = 54/724 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R+E + L + +  H   YY    PI+ D+E+D L     A+   +P L      + P 
Sbjct: 19  EIRQEWTELAETVRDHQFRYYVKDAPIVSDAEFDRLFGELQALEEKYPAL---RTADSPT 75

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +GG  +     V H     SL+ +++ E+LR ++          +D  + F  E KID
Sbjct: 76  QLVGGGFSTDFAPVEHLERMTSLDNVFSEEELRDWVASAVEQAGVPEDR-LPFLCEVKID 134

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP----RVLSLNIPEIIEVRGEV 191
           G  + + Y  GK V AA RGDG +GEDV+   R I  IP          +P ++EVRGEV
Sbjct: 135 GVALDLVYRDGKLVSAATRGDGRTGEDVTLNARTIEDIPVTLTPTPDRPVPSLLEVRGEV 194

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           +    DF  LN  ++A G+ P+ANPRN+A+G LR+ NP     R L  + HGLG      
Sbjct: 195 FFRLEDFAELNARLVAEGKAPFANPRNSAAGSLRQKNPAITAQRRLGMYCHGLGAVEGAT 254

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +  +++   +   G PV+     A     +V         RS   ++IDGLV K+D+ +
Sbjct: 255 FESLHDVYLALADWGLPVSPHTAPATGVEEVVERMRYWGEHRSDPEHEIDGLVVKIDDRA 314

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q++LG+ +R+PRW I++K+  ++  T LLDI + +GRTG +TP A +EPV + G+ ++ 
Sbjct: 315 VQRRLGQTSRAPRWAIAYKYPPEEVMTELLDIRVSVGRTGRVTPFAYMEPVLVAGSTVSL 374

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+  +             + + +GD V++++AG+VIP+V+  +V  R    + F F
Sbjct: 375 ATLHNQTEVIR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVERRDGTEREFVF 423

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C + +         +  A  RC    +C AQ  ERL +  SR+A +IE LG + 
Sbjct: 424 PERCPECDTVLA-----PAREGDADWRCPNQRSCPAQLRERLFYLASRNALDIEALGYEG 478

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD---------- 540
                     +  +   A +F L       T     I       +    +          
Sbjct: 479 ASDLL----ASGVLENEAGLFDLTEADLLRTHLYTRIEKATRKQIEEGAEPERVVLTENG 534

Query: 541 -----SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                ++   ++  L R + +L IRHVG   AR+LA  + + +      +          
Sbjct: 535 RKLLANLATAKDRPLWRVLVALSIRHVGPTAARALATRFGTMEAIRAASD---------- 584

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
             L     VG  IA ++VE++    +   V+             ++++   +E   +V T
Sbjct: 585 QELAETDGVGQTIAASVVEWFGVDWHREIVDRWAAAGVSMADERDESIPRTLEGLTIVAT 644

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G+L+   R   +E +   G   S  +S+KTD ++VGDNPGSK  KA++LG+ I++E  F+
Sbjct: 645 GSLEGFTRDGIKEAIIARGGKASGSVSKKTDYVVVGDNPGSKAAKAEELGLTILDEAGFV 704

Query: 716 FLLQ 719
            L++
Sbjct: 705 ELME 708


>gi|114797923|ref|YP_759116.1| DNA ligase, NAD-dependent [Hyphomonas neptunium ATCC 15444]
 gi|122942770|sp|Q0C577|DNLJ_HYPNA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|114738097|gb|ABI76222.1| DNA ligase, NAD-dependent [Hyphomonas neptunium ATCC 15444]
          Length = 701

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 280/691 (40%), Positives = 408/691 (59%), Gaps = 28/691 (4%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YYQ   P + D++YDAL++R  AI   FP L R    + P +++G E      K  HS P
Sbjct: 33  YYQNDAPELTDADYDALRQRNLAIEARFPALKRE---DSPTDRVGAEAGDGFAKARHSAP 89

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+  +  ED+  F  RI RF     + ++ FT EPKIDG  +++ YE GK + AA R
Sbjct: 90  MLSLDNAFTDEDVADFAVRIRRFLGLAPEETLAFTAEPKIDGLSLSLTYENGKLMRAATR 149

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           GDG +GEDV+A  R +  IP  L     PE IEVRGEVY++K+ F  LN      GRK +
Sbjct: 150 GDGQTGEDVTANARTLGDIPVKLKGKGWPERIEVRGEVYMAKSAFADLNAREAEAGRKVF 209

Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA+G LR+L+     +R L FF +     SE FA+ Q+E ++     GF  N+ +
Sbjct: 210 ANPRNAAAGSLRQLDVEITKSRPLRFFAYAWAAASEPFAQTQFEAVKAFADWGFVTNSRM 269

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
            +  T   ++SYY E+++ R++L YDIDG+VYKVD    Q++LG  +R+PRW I+HKF  
Sbjct: 270 IRIKTVEEVLSYYQEIEAERASLEYDIDGVVYKVDRLDWQQRLGFVSRAPRWAIAHKFPA 329

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
           ++A T LL IDIQ+GRTG LTPVARLEPV +GG +++NATLHNED I  L          
Sbjct: 330 EKAVTTLLGIDIQVGRTGSLTPVARLEPVTVGGVVVSNATLHNEDEIARL---------- 379

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
             ++ GD+V ++RAG+VIP+V+ ++         P++ P  CP+C S  VR+++   G+ 
Sbjct: 380 -GVKPGDKVEIQRAGDVIPQVLRVVEP---GQGAPWAMPDTCPVCGSAAVREIDDA-GRA 434

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
               RCTGGL C AQ +ERLKHFVSR A +I+GLG++Q+  F +      +++ P DIF 
Sbjct: 435 DVRRRCTGGLICPAQAVERLKHFVSRKALDIDGLGEKQVLLFHEK----GAVKAPQDIFR 490

Query: 513 LQR-RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           L++  +      +E   GFG  S   LY +I+ RR +   RF+  LGIR+VG   +   A
Sbjct: 491 LKKNIEAAGLPPLEEWEGFGAQSARKLYSAIDARRKVPFARFLNGLGIRYVGQTTSAQFA 550

Query: 572 KYYLSYQNFAQEINNIIA--HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
           + +LS+Q+F   +         ++ +  LI +  +G   A++++ F   P N   + A L
Sbjct: 551 RSFLSWQSFWAAVKAAEEGGIESEAYNELIGIDGIGQAAARSLMAFEGEPHNREMLAA-L 609

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
            E             S +  K +VFTGTL+K+ R +A+   + LGA V+  +S KTDI+I
Sbjct: 610 LEEVEVEDEIPAETGSPVTGKTVVFTGTLEKMTRDEAKARASALGAKVAGTVSAKTDIVI 669

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            G   GSKL KA+QLG+ +M E+++L L+ +
Sbjct: 670 AGPGAGSKLVKAEQLGLAVMTEDEWLALIGE 700


>gi|294011619|ref|YP_003545079.1| NAD-dependent DNA ligase [Sphingobium japonicum UT26S]
 gi|292674949|dbj|BAI96467.1| NAD-dependent DNA ligase [Sphingobium japonicum UT26S]
          Length = 711

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 276/739 (37%), Positives = 417/739 (56%), Gaps = 56/739 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +  + +++  +A   L  L +EI+ H+  Y+   +P I D+ YDAL R  +A+  AFP L
Sbjct: 1   MTDLTSMTEAEAANHLMRLAREIARHNRLYHDQDQPEITDAAYDALIRENNALEAAFPHL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            RS   + P  ++G     +L KV H++  +SL+  +  ED+ +FI R+ RF    ++  
Sbjct: 61  VRS---DSPNAQVGAAPTSALKKVQHAVRMMSLDNGFADEDIAEFIARVRRFLALPENAP 117

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEI 184
           +  T EPKIDG   ++RYEKG+ V AA RGDG +GEDV+A +R I  IP  L+ +  P++
Sbjct: 118 VALTAEPKIDGLSCSLRYEKGELVLAATRGDGTTGEDVTANVRTIADIPERLTGDTVPDL 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNPT-DITRYLNF 238
            EVRGEVY++K +F+ALN+ ++A    P     +ANPRNAA+G LR+ +     +R L F
Sbjct: 178 FEVRGEVYMAKANFVALNERLLAEAEDPEKARQFANPRNAAAGSLRQKDAAVTASRPLRF 237

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
             HG G+ S + A+ Q  ++Q +   G PV++ +   +T   ++++Y  +++ R+ LP+D
Sbjct: 238 LAHGWGEVSAVPAETQLGVMQAIASWGLPVSDRLTCVDTLESLIAHYRAIEAARAELPFD 297

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD    Q++LG  A++PRW I+HKF  ++A T L  IDIQ+GRTG LTPV RL
Sbjct: 298 IDGVVYKVDRLDWQQRLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRL 357

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV +GG +++N TLHN D I  L            +R GDR++V+RAG+VIP+V  +  
Sbjct: 358 TPVTVGGVVVSNVTLHNADEIARL-----------GVRPGDRIVVQRAGDVIPQV--VDN 404

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             R     PF+FP  CP+CQS  VR+            RCTGGL C AQ+ ERL+HFVSR
Sbjct: 405 LTRDDPRAPFAFPDHCPVCQSEAVREEGE------VDIRCTGGLICPAQRFERLRHFVSR 458

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +IEGLG++ ++ F         I  PADIF L+  +     +     G+ + SV NL
Sbjct: 459 AALDIEGLGEKSIEEFLD----LGWIAEPADIFRLKTHRADLMGR----EGWKEKSVDNL 510

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---- 594
             +I  +R     R +F LGIRH+GA  AR L K Y +          IIA  +      
Sbjct: 511 LAAIEAKRQPDAARLLFGLGIRHIGAVTARDLLKRYATLPAIHALALEIIALRDAAQPAE 570

Query: 595 --------------WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
                             I V  VG  +  A+ +F+  P N+     LL EVSP     E
Sbjct: 571 GEEESRFRNRLDKAIAEQIGVENVGSAVGHALADFFHEPHNVEVWNDLLSEVSPPDYVVE 630

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
              +S +  K +VFTG L+ + R +A+    ++GA  +  +S KTD+++ G   GSKL++
Sbjct: 631 -TTASAVTGKTVVFTGKLETMSRDEAKAQAERMGAKAAGSVSAKTDLVVAGPGAGSKLKQ 689

Query: 701 AQQLGVKIMNEEQFLFLLQ 719
           A  LG+++++E  +  +++
Sbjct: 690 AAALGIEVIDEAAWAEIVK 708


>gi|303247047|ref|ZP_07333322.1| DNA ligase, NAD-dependent [Desulfovibrio fructosovorans JJ]
 gi|302491473|gb|EFL51358.1| DNA ligase, NAD-dependent [Desulfovibrio fructosovorans JJ]
          Length = 693

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 243/729 (33%), Positives = 365/729 (50%), Gaps = 58/729 (7%)

Query: 12  LSIEQ-ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           +S E+ A   L  L  +I  HD  YY    P+I D+ YDAL R    +  A P+L   +D
Sbjct: 1   MSEEKDAAARLRELRAQIHEHDYRYYVLDDPVIEDAAYDALYRELRKLETAHPEL---DD 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-SIFFT 129
           PN P  ++GG +  +     H +   SL+   + E+ R F+TR     +++    +  F 
Sbjct: 58  PNSPTKRVGGTVLPAFVSKPHRLAMYSLDNAMSEEEWRDFVTRAANKLEREGQPFTRTFW 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-------RVLSLNIP 182
           ++PK DG  + I YE G +  A  RGDG  GEDV+  +R +  +P          +L +P
Sbjct: 118 VDPKFDGLALEIIYENGVYAGALTRGDGEVGEDVTENVRTVKNVPLDLRPHAVRANLPVP 177

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVH 241
            ++EVRGEV +++ DF  LN+     G K +ANPRNAA+G +R+L+     +R L FF +
Sbjct: 178 ALLEVRGEVVMTRQDFYELNERQREQGGKIFANPRNAAAGSVRQLDSKISASRPLTFFAY 237

Query: 242 GLGKTSE----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            +G                ++  +  LG PV    + A     +  Y+  M   R  LP+
Sbjct: 238 AIGAQDWAGADPGWTTHSGIMAGLGKLGLPVAREGKVAGE-DAVYPYFKTMGVRRPDLPF 296

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KVD  + Q+ LG   R+PR+ I+ KF   +A T L  I++Q+GRTG+LTPVA 
Sbjct: 297 EIDGVVVKVDSLADQEALGFTGRAPRFAIALKFPAHEAETVLKRIEVQVGRTGVLTPVAI 356

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV++ G  ++ ATLHNED IK            +D+R GD V+V+RAG+VIP+VV ++
Sbjct: 357 LEPVSLAGVTVSRATLHNEDEIK-----------AKDLRAGDTVVVRRAGDVIPEVVRVV 405

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
             +R  DA+PF FP  CP C S  VR          AA RC   LAC A     + +FVS
Sbjct: 406 PEKRPADAEPFPFPHICPSCHSPAVRAPGE------AAWRCVN-LACPAMLRRGIAYFVS 458

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           +   +IEG+G + +            ++ PAD+F L         ++        V+   
Sbjct: 459 KSGLDIEGIGNKWVKTLIDK----GMVKTPADLFNLTEMDLIPMERMAEKSAANFVAAVE 514

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
                       L + I +LG+R VG   AR+LA+++      A   +            
Sbjct: 515 KAQQNAT-----LAKLIAALGMRQVGTRTARTLAEHFRDLDGLAAATS----------ED 559

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVF 654
           L  +P +G  +A +I EF+ N  N   +E   +     +   +  V    + +  KK +F
Sbjct: 560 LTALPDIGPEVAGSIREFFDNAANRELIERFRQIGLWPVSEPKTAVPPEATPLGGKKFLF 619

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL  + R KA+  V   G  V   +S+K D ++VG +PGSKL KAQ LG+ I++ E F
Sbjct: 620 TGTLPGMSREKAEALVEAAGGRVMKSISKKLDYLVVGADPGSKLAKAQSLGITILDAEAF 679

Query: 715 LFLLQQYNT 723
             LL + N 
Sbjct: 680 QELLGEENA 688


>gi|297202535|ref|ZP_06919932.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083]
 gi|197709937|gb|EDY53971.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083]
          Length = 730

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 212/737 (28%), Positives = 354/737 (48%), Gaps = 62/737 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR++ + L ++I  H   YY    P++ D+++D L R  +A+   +P+L     P+ 
Sbjct: 12  PSEAREKHAQLAEQIEEHRFRYYVNDAPVVSDADFDKLLRSLEALEDEYPEL---RTPDS 68

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G        V H    LSL+  ++ E+L  +  R+ +     D +      E K
Sbjct: 69  PTQKVAGAYETEFTSVQHRSRMLSLDNAFSDEELAAWAERVAKDVGTTDYH---LLCELK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG +GED++  +R I  IP  L+ +  P+++E+RGEVY
Sbjct: 126 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLTGDKVPDLVEIRGEVY 185

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G       
Sbjct: 186 FPMEKFEELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGALEGFDG 245

Query: 252 KGQYEM-LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             +       ++  G P     +  +   G+  +       R ++ ++IDG V K+DE  
Sbjct: 246 MTRLSQGYDLLKSWGLPTAKHNKVVDGLDGVREFIAYFGENRHSVEHEIDGAVVKLDEIP 305

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +R+PRW I++K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ +  
Sbjct: 306 LQGRLGSTSRAPRWAIAYKYAPEEVNTKLINIRVGVGRTGRVTPYAQVEPVTVAGSEVEF 365

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+D +K            + + +GD V++++AG+VIP+++  +V+ R    + F  
Sbjct: 366 ATLHNQDVVK-----------LKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVM 414

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK-- 488
           P+ CP C + +         +     RC     C AQ  ERL +   R + +IE  G   
Sbjct: 415 PAECPECGTALRPM-----KEGDVDLRCPNARTCPAQLRERLFYLAGRKSLDIEHFGYVA 469

Query: 489 ----------------QQLDFFFKSEDPAFSIRIP--ADIFTLQRRQQTSTTK-----IE 525
                            + D F  + +    I+         L +R   +  +       
Sbjct: 470 AAALTQPLEPSDPPLTDEGDLFDLTIEQLLPIKAYVLDQDSGLPKRDPKTGEEKVATVFA 529

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
           N  G    +   + ++I   ++  L R +  L IRHVG   A +LA+ + S     Q   
Sbjct: 530 NQQGEPKKNAVAMLENIAAAKDRPLARVLTGLSIRHVGPVAAEALARNFRSIDRIEQASE 589

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-- 643
                       L     VG IIA+++ E++    +   +                    
Sbjct: 590 ----------EELANTDGVGSIIAKSLKEWFAEDWHQEILRKWKAAGVRMEEEGSGEDEG 639

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              +E   +V TGTL++  R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA Q
Sbjct: 640 PRPLEGLTVVVTGTLERFTRDGAKEALQSKGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQ 699

Query: 704 LGVKIMNEEQFLFLLQQ 720
           L V ++NE+ F  LL+Q
Sbjct: 700 LKVPVLNEDGFDVLLEQ 716


>gi|329959979|ref|ZP_08298475.1| DNA ligase [Bacteroides fluxus YIT 12057]
 gi|328533113|gb|EGF59882.1| DNA ligase [Bacteroides fluxus YIT 12057]
          Length = 665

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 227/706 (32%), Positives = 354/706 (50%), Gaps = 48/706 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A++++  L  E+  H+  YY  + P I D E+D        +    P+    +D N P  
Sbjct: 3   AKEKIDRLRAELHQHNYNYYVLNAPEISDKEFDDKMHELQNLEKEHPEY---QDENSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +      +       E K DG
Sbjct: 60  RVGSDLNKNFTQVAHKYPMLSLGNTYSENEVTDFYDRVKKTL----NEDFEICCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE GK + A  RGDG  G+DV+  ++ I TIP VL  N P   E+RGE+ +   
Sbjct: 116 TSISLTYEDGKLIRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNYPRSFEIRGEILMPWE 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F  LN E  A     +ANPRNAASG L+  N   +               E+   G YE
Sbjct: 176 SFEMLNREREAREEPLFANPRNAASGTLKSQNSAVVASRKLDAYLYYLLGEELPCDGHYE 235

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ     GF ++   ++A++   +  Y N   + R  LP   DG+V KV+    QK LG
Sbjct: 236 NLQMAGSWGFKISEHTKKASSLEEVFEYINYWDTERKNLPVATDGIVLKVNSLRQQKNLG 295

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN 
Sbjct: 296 FTAKSPRWAIAYKFQAERALTRLNKVSYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNA 355

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435
           D I+GL           D+ +GD V V++ GE+IPK+  +  N R     +   F + CP
Sbjct: 356 DIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKNARGMLLGEKVRFITHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C +R++R          AAH C    AC  Q   R++HF+SR A NI+GLG + +D F+
Sbjct: 405 ECGNRLIRYEGE------AAHYCPNETACPPQIKGRIEHFISRKAMNIDGLGPETVDMFY 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I+  AD++ L+     +      +   G+ S  N+ + I   + +  ER +F
Sbjct: 459 R----LGLIKDTADLYDLKADDIKN------LDRMGEKSAENIINGIAASKEVPFERVLF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ +AK +   +             N D  +L  +  +G+ IAQ+I+ +
Sbjct: 509 ALGIRFVGETVAKKIAKSFTDIEELI----------NTDLENLKNIDEIGEKIAQSIITY 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           + NP N   V  L         + E       ++  + +V +G      R + +E + + 
Sbjct: 559 FSNPFNRELVGRLKAAGLQLFRKEEDLSGYTDKLTGQSIVISGVFTHHSRDEYKELIEKN 618

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           G      +S KT  I+ G+N G +KLEKAQ+LGVKIM+E++FL L+
Sbjct: 619 GGKNVGSISAKTSFILAGENMGPAKLEKAQKLGVKIMSEDEFLTLI 664


>gi|124006376|ref|ZP_01691210.1| DNA ligase, NAD-dependent [Microscilla marina ATCC 23134]
 gi|123988033|gb|EAY27704.1| DNA ligase, NAD-dependent [Microscilla marina ATCC 23134]
          Length = 691

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 205/711 (28%), Positives = 357/711 (50%), Gaps = 45/711 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ ++A++ +  L +++ +++  YYQ    ++ D ++D L      +   FP   +    
Sbjct: 1   MTNQEAQERIRELSKDLHHYNYMYYQKHVSVVTDYKFDKLLEELIDLEEKFPQFKKD--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +      + H    LSL   ++ +DL  F  R+ +     DD  I +  E
Sbjct: 58  DSPSQRVGGTITKDFPTIKHRYRMLSLGNTYSKDDLLDFDKRLKKLLG--DDKEIEYICE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
            K DG  I++ YE GK V AA RGDG  G+DV+A  R I T+P  +  N  P   EVRGE
Sbjct: 116 LKFDGVSISLTYENGKLVTAATRGDGVQGDDVTANARTIRTVPISIQGNSFPANFEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           V++    F A+N + +  G+  YANPRN ASG ++  +  ++ +              + 
Sbjct: 176 VFMPNKVFEAINAQRVKEGKDLYANPRNTASGTMKLQDSAEVAKRKLDAYLYFLLGDNLP 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   E ++ +   GF V+   ++      ++ Y N  +  R  LP D DG+V KV++  
Sbjct: 236 YKTHEEAIKAVESWGFHVSPTYKRCTGIDAVMEYVNHWEKERKNLPVDTDGVVIKVNDID 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  ++SPRW I++K+  +  ST L  I  Q+GRTG +TPVA L PV + G  +  
Sbjct: 296 LQEQLGFTSKSPRWAIAYKYKAESVSTVLNSITYQVGRTGSVTPVAELTPVQLAGTTVKR 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D I+              +   D V V++ GE+IPKV  + + +R  +AQ   F
Sbjct: 356 ASLHNADEIES----------RLQLHENDTVFVEKGGEIIPKVTGVDLTKRAANAQAVKF 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
              CP C + +VR          A H C     C  Q   R++HF+ R+A +I+ +G + 
Sbjct: 406 IDHCPECGTALVRKDGE------ANHYCPNEKGCPPQIKGRIEHFIQRNALDIDSMGGET 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  F+       ++  AD++ L  +Q  S      +  FG+ S  NL + + + ++IS 
Sbjct: 460 INQLFEK----GLVKNVADLYDLTLKQLLS------LDRFGEKSAHNLIEGLKQSKSISF 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R ++ LGIR VG  +A+ LA ++ + +   +  +            L+ V  +G  IA 
Sbjct: 510 ARVLYGLGIRFVGKTVAQKLAVHFKTMEAIQKASH----------DELVAVEDIGGRIAD 559

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +++E +++  N+  +  L              +  S +++ K  V +GT Q+  R + ++
Sbjct: 560 SLIEHFKDTENLDVINRLKAAGLQFEDNTPVLQKDSDKLDGKTFVVSGTFQQFSRDEIKQ 619

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            +   G  V + +S+K D +I GD  G SKL+KA++L V +++E++F+ ++
Sbjct: 620 KIEANGGKVVSSISKKLDYLIAGDKMGPSKLDKAKKLDVTMISEDEFVQMV 670


>gi|298385661|ref|ZP_06995219.1| DNA ligase, NAD-dependent [Bacteroides sp. 1_1_14]
 gi|298261802|gb|EFI04668.1| DNA ligase, NAD-dependent [Bacteroides sp. 1_1_14]
          Length = 666

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 225/709 (31%), Positives = 354/709 (49%), Gaps = 51/709 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+     D N P 
Sbjct: 2   DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLELAHPEYK---DENSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +++ +  +V H  P LSL   ++  ++  F  R+ +      +       E K D
Sbjct: 59  MRVGSDISKNFTQVAHKYPMLSLANTYSESEVTDFYERVRKAL----NEDFEICCEMKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           GT I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ + 
Sbjct: 115 GTSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPSSFEIRGEILMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
              F  LN E  A     +ANPRNAASG L+  N + +                +   G 
Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGDNLPCDGH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK 
Sbjct: 235 YENLQEAAKWGFKISDLTRKCQTLEEVFEFINHWDVERKNLPVATDGIVLKVNSLRQQKN 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+ V + G ++  A+LH
Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDAVQLSGTIVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-HPDAQPFSFPSF 433
           N D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F + 
Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFITN 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S+++R          AAH C    AC  Q   R++HF+SR A NI+GLG + +D 
Sbjct: 404 CPECGSKLIRYEGE------AAHYCPNETACPPQIKGRIEHFISRKAMNIDGLGPETVDM 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F++       I   AD++ L+            +   G+ S  N+   I + + +  ER 
Sbjct: 458 FYR----LGLIHNTADLYELKADDIKG------LDRMGEKSAENIITGIEQSKTVPFERV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG  +A+ +AK +       Q           D   LI +  +G+ IA++I+
Sbjct: 508 IFALGIRFVGETVAKKIAKSFGDIDELQQA----------DLEKLISIDEIGEKIARSIL 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYV 670
            ++ N  N   V  L KE    + R E+++S    ++  + +V +G      R + ++ +
Sbjct: 558 LYFSNESNRELVGRL-KEAGLQLYRTEEDMSGYTDKLAGQSIVISGVFTHHSRDEYKDLI 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            + G      +S KT  I+ GDN G +KLEKA++LGV I++E++FL L+
Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGVTILSEDEFLKLI 665


>gi|301066103|ref|YP_003788126.1| NAD-dependent DNA ligase [Lactobacillus casei str. Zhang]
 gi|300438510|gb|ADK18276.1| NAD-dependent DNA ligase [Lactobacillus casei str. Zhang]
          Length = 674

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 235/717 (32%), Positives = 366/717 (51%), Gaps = 51/717 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A+ E+  L ++++     YY    P + D+ YD   R   A+  A+P L  
Sbjct: 5   PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKLV- 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+         + + 
Sbjct: 64  --TPDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARMQSNVG----HPVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE GK V  + RGDG+ GEDV+  +  I ++P+ L   +   +EV
Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPKQLKQPLS--LEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE Y+ K  F  LN      G  P+ANPRNAA+G LR+L+      R L+ F++ L + 
Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +     Q+E +  M+ LGF  N     A     I +Y  +  + R  LPY IDG+V KV
Sbjct: 236 EQFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G 
Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V +R  D  
Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPVDTP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   P  CP C  ++V   +        A RC   + C AQ  E+L HF SR+A NI+GL
Sbjct: 405 PAPIPEVCPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +            ++  AD++ L             +  F + S+ NL  +IN  R
Sbjct: 458 GPKIVAQLQAK----HLVKDVADLYHLTAADL------AKLDKFKEKSINNLLSAINNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+ER IF LGIRHVG + AR LA+++    +                 ++  VP +G 
Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQ----------EAIADVPNIGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            IA+AIV +++       +  L +       +         S +  K +V TG   +  R
Sbjct: 558 TIAEAIVTYFKAATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFAEFSR 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               + +  LGA V+  +S+KTD++I GD  GSKL KAQ L V IMNE + L  L+ 
Sbjct: 618 PALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNVPIMNETELLANLKD 674


>gi|295426520|ref|ZP_06819170.1| NAD-dependent DNA ligase LigA [Lactobacillus amylolyticus DSM
           11664]
 gi|295063888|gb|EFG54846.1| NAD-dependent DNA ligase LigA [Lactobacillus amylolyticus DSM
           11664]
          Length = 669

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 213/716 (29%), Positives = 367/716 (51%), Gaps = 52/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  ++++QA+ E+++L +++    + YY    P + D+ YD    R   +   FP+L   
Sbjct: 1   MADITLDQAKTEVAALRKQLDEWAEAYYSKDAPEVEDNVYDQKYNRLLELEKDFPELV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GG+++    KV H IP LS+  +++ E+LR+F  RI +       + + +
Sbjct: 59  -TPDSITQRVGGKIDTKFTKVAHPIPMLSMGDVFSKEELREFDQRIQKQVG----HPVAY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y+ G+ + A+ RG+G  GEDV+A  R I  IP+ L   +   IEVR
Sbjct: 114 NVELKIDGLSLSLEYQNGRLMRASTRGNGQVGEDVTANARFIRDIPQTLPKPL--TIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+SK  F  LN E    G++ +ANPRNAA+G LR+L+     +              
Sbjct: 172 GECYMSKEAFAKLNAERDENGKEVFANPRNAAAGSLRQLDAKVTKKRDLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ +++M  LGF  N   R+  T   I  + +E  + R +LPY IDG+V KVD+
Sbjct: 232 EGITSQHQAIEEMHKLGFHTNQTGRKLETLDEIFDFIDEYTAKRDSLPYCIDGIVLKVDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             ++++LG   + PRW I++KF  ++  T + DI+  +GRTG++TP A ++PV + G  +
Sbjct: 292 LGIEQELGSTVKVPRWEIAYKFPPEEQETVVRDIEWTVGRTGVVTPTAVMDPVQLAGTTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A LHN D +K            +D+R+GD V + +AG++IP++ ++++++R  D++P+
Sbjct: 352 ARAVLHNPDLLK-----------EKDVRIGDTVKLHKAGDIIPEISEVVLSKRPADSKPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C  ++V            A RC    +C AQ  E + HF SR A NI GLG 
Sbjct: 401 EIPTTCPSCGQKLVHLKGE------VALRCINP-SCPAQLEEGIIHFASRQAMNIAGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +      +     +   AD++ L             +  F + S+ NL  +I+K +  
Sbjct: 454 KIVKQLIAKD----LVHNVADLYHLTPDDLM------QLDHFKEKSINNLLTAIDKSKQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  +  LGI HVGA++AR +++ + +                 D   +  +  +G  I
Sbjct: 504 SVELLLTGLGIDHVGAKVARLISQKFKNLPKIMAA----------DVQEVAAIDTIGPTI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI-----GRHEKNVSSEIENKKLVFTGTLQKIQR 663
           A+++  ++  P     +E L +               +   +  +NK +V TG L    R
Sbjct: 554 AESLTTYFAQPAVQKLIEELEESGLNMDYLGQDETEAEIADNFFKNKTVVLTGKLAHYTR 613

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  + +  LGA V+  +S KTD +I G + GSK  KAQ LGV  + EE+ +  ++
Sbjct: 614 SEFTKRLQSLGAKVTGSVSHKTDYVIYGKDAGSKFTKAQSLGVPTLTEEEAIAQIK 669


>gi|191637997|ref|YP_001987163.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus
           casei BL23]
 gi|254781352|sp|B3WD54|DNLJ_LACCB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190712299|emb|CAQ66305.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus
           casei BL23]
 gi|327382073|gb|AEA53549.1| DNA ligase [Lactobacillus casei LC2W]
 gi|327385217|gb|AEA56691.1| DNA ligase [Lactobacillus casei BD-II]
          Length = 674

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 235/717 (32%), Positives = 366/717 (51%), Gaps = 51/717 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A+ E+  L ++++     YY    P + D+ YD   R   A+  A+P L  
Sbjct: 5   PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKLV- 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+         + + 
Sbjct: 64  --TPDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARMQSNVG----HPVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE GK V  + RGDG+ GEDV+  +  I ++P+ L   +   +EV
Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPKQLKQPLS--LEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE Y+ K  F  LN      G  P+ANPRNAA+G LR+L+      R L+ F++ L + 
Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +     Q+E +  M+ LGF  N     A     I +Y  +  + R  LPY IDG+V KV
Sbjct: 236 EQFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G 
Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V +R  D  
Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPVDTP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   P  CP C  ++V   +        A RC   + C AQ  E+L HF SR+A NI+GL
Sbjct: 405 PAPIPEACPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +            ++  AD++ L             +  F + S+ NL  +IN  R
Sbjct: 458 GPKIVAQLQAK----HLVKDVADLYHLTAADL------AKLDKFKEKSINNLLSAINNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+ER IF LGIRHVG + AR LA+++    +                 ++  VP +G 
Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQ----------EAIADVPNIGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            IA+AIV +++       +  L +       +         S +  K +V TG   +  R
Sbjct: 558 TIAEAIVTYFKAATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFAEFSR 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               + +  LGA V+  +S+KTD++I GD  GSKL KAQ L V IMNE + L  L+ 
Sbjct: 618 PALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNVPIMNETELLANLKD 674


>gi|167750769|ref|ZP_02422896.1| hypothetical protein EUBSIR_01747 [Eubacterium siraeum DSM 15702]
 gi|167656204|gb|EDS00334.1| hypothetical protein EUBSIR_01747 [Eubacterium siraeum DSM 15702]
          Length = 660

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 228/710 (32%), Positives = 366/710 (51%), Gaps = 51/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  EQ + E   L ++   H+  YY    P I D EYD L RR   I    P++      
Sbjct: 1   MDKEQIKSEYEQLCKQAEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIV---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P   +GG    +  KVTH +   SL+ +++  +L +F  R+ +   K       + +E
Sbjct: 58  SSPTQHVGGYAINTFEKVTHEVQMGSLQDVFSKGELYEFDERVKKAVGKAV-----YCVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++ Y+ G F   + RGDG  GED++  ++ I +IP  L+  IP  IEVRGEV
Sbjct: 113 PKIDGLSVSLEYKDGIFTRGSTRGDGFVGEDITKNLKTIKSIPMELNEKIP-FIEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K DF  L  + +    +P  NPRNAA+G LR+ +     +R L+ FV  L + +   
Sbjct: 172 YMPKADFEKLVRKQLENDEQPAKNPRNAAAGSLRQKDSRVTASRGLDIFVFNLQRIAGRE 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  M+ LGF V +G +  +     VS   E+   R +  YDIDG V KVD F 
Sbjct: 232 LTCHSESLDYMKSLGFNVIDGYKTFDNIEDAVSRIMEIGENRQSYSYDIDGAVIKVDNFE 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L+ +LG  A+ P+W ++ K+  ++  T+LLDI+I +GRTG LTPVA  EPV + G  ++ 
Sbjct: 292 LRNELGSTAKVPKWAVAFKYPPEEKETKLLDIEINVGRTGALTPVAVFEPVWLAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A LHN+DYI             +DIR+GD + V++AG++IP+VV  + +    +++PF  
Sbjct: 352 AVLHNQDYIDS-----------KDIRIGDIIAVRKAGDIIPEVVRSVSHA--ENSEPFVI 398

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C  +  R  +       A  RC   + C AQ L+ ++HF SR A NI+GLG+  
Sbjct: 399 PHICPVCHGKAERAEDE------AVIRCVN-IDCPAQLLKNIEHFASRPAMNIDGLGEAV 451

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +    ++      I   AD++ LQ++        E + GF  VS + L  +I   +  S 
Sbjct: 452 VKQLVENR----LISTVADLYGLQQQDL------EMLPGFAKVSASKLIANIENSKANSP 501

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +R +F+LGI+ +G + A+ L K++ S +  ++               +  V   GDI+A 
Sbjct: 502 DRLLFALGIKGIGQKNAQLLMKHFGSIEKLSET----------SPEEISAVENFGDILAN 551

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I      P     ++ L      ++ + +     ++     V TGTL  + R +A+  +
Sbjct: 552 NIFTALHEPHMTELIKRLKSYGVNTVYQSDVKSD-KLAGLTFVITGTLPDMTRDEAKTLI 610

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            Q G   S  +S+KT  ++ G+  GSKL KAQQLGV +++++Q + ++ +
Sbjct: 611 EQNGGKCSGSVSKKTSYVLAGEEAGSKLTKAQQLGVTVISQQQLIEMIGE 660


>gi|71064896|ref|YP_263623.1| NAD dependent DNA ligase [Psychrobacter arcticus 273-4]
 gi|123734475|sp|Q4FUW9|DNLJ_PSYA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71037881|gb|AAZ18189.1| probable NAD dependent DNA ligase [Psychrobacter arcticus 273-4]
          Length = 691

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 375/711 (52%), Gaps = 43/711 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + +    ++ +    +  H+  YY    PI+ DSEYD L+R    +   +PDL +   P+
Sbjct: 21  NDDAIVTQMRTFIDTLKQHNYAYYVLDNPILEDSEYDQLRRSLLELEEEYPDLVQ---PD 77

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P+N++G     +  +VTH IP LSL  ++   DLR F+ R+         +   + +E 
Sbjct: 78  SPINQVGDMPLPAFTQVTHDIPMLSLGNVFEYNDLRDFMRRVNDRLSVAQQSP-EYEMEL 136

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEV 191
           K+DG  ++++Y  GKF  A  RGDG +GED++   + I  +P  L+     E++EVRGEV
Sbjct: 137 KLDGLAVSLKYVHGKFTQAVTRGDGQTGEDITQNAKTIRNMPLWLADAADIELLEVRGEV 196

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF 250
            + K  F  LN        K +ANPRNAA+G LR+L+P+        F+ + + +     
Sbjct: 197 LMPKAGFERLNRLAAEKEEKTFANPRNAAAGSLRQLDPSVAASRPLAFYAYSVNQGLLDT 256

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q   L  ++ +GF   + V   +      +YY  + + R+ LP++IDG+V KV+  +
Sbjct: 257 IDTQSAALAWIKDIGF-SVSAVEVVSNPREAQTYYESIIATRADLPFEIDGMVIKVNSLA 315

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  +R PRW  ++KF  +   TRL  ID Q+GRTG +TPV +LEPV +GG  ++N
Sbjct: 316 LQQQLGFLSREPRWATAYKFPAETVMTRLHAIDWQVGRTGQITPVGKLEPVKVGGVTVSN 375

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            TLHN   I+ L           D+R GD V V RAG+VIPKV  +   +R  +++P   
Sbjct: 376 VTLHNFGEIQRL-----------DVRAGDMVSVHRAGDVIPKVTRVWHEQRPENSEPVQL 424

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S VV   +       A  RCTGGL C AQQ E L HFVSR A +I+GLG   
Sbjct: 425 PSTCPVCDSPVVLPKDE------ALARCTGGLFCPAQQQEALIHFVSRRAMDIDGLGASW 478

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L  FF+       ++  ADI+ L   Q+    ++  +   G+ SV N+  +I   ++ +L
Sbjct: 479 LISFFEH----GLVKTVADIYQLHNHQE----ELVTLEKLGEKSVQNIISAIEASKHTTL 530

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI++LGIR VG   A++LA+ +                       L+  P VG I A+
Sbjct: 531 SRFIYALGIRGVGETTAQNLAQQFGDLDALMSA----------SIEKLLLTPDVGAITAE 580

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEY 669
              +F++ P NI  + AL +         +       ++ +  V TG L  + R +A+  
Sbjct: 581 LAYKFFRAPHNIEVITALREAGVHWDKVEQVVSEGLPLDGQTWVITGALDSMARDEAKAK 640

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  LGA VS  +S KT  ++ GD  GSK+ KA++LGVK++ EE+FL L+ +
Sbjct: 641 LQALGAKVSGSISAKTTALLAGDKAGSKMAKAEKLGVKVVGEEEFLALVGE 691


>gi|291454298|ref|ZP_06593688.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074]
 gi|291357247|gb|EFE84149.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074]
          Length = 736

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 209/742 (28%), Positives = 343/742 (46%), Gaps = 61/742 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
              AR+    L +++  H   YY   +P++ D+E+D   R    +   +P L     P+ 
Sbjct: 19  PADARERHKHLAEQVEEHRFRYYVNDQPVVSDAEFDRQLRALTQLEEQYPPL---RTPDS 75

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G+       V H    LSL+  ++ E+L  +  R+ +       +   F  E K
Sbjct: 76  PTQKVAGQYETEFTSVQHRERMLSLDNAFDDEELAAWAERVAKEVGAPGYH---FLCELK 132

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG  GED++  +R I  IP  L  +  P ++E+RGEV+
Sbjct: 133 VDGLAVNLTYEHGRLTRAATRGDGRVGEDITPNVRTISDIPERLHGDDLPALVEIRGEVF 192

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               +F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G       
Sbjct: 193 FPMEEFEKLNARLVEAGEKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGAREGFTI 252

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                    +R  G P     +      G+ ++       R ++ ++IDG+V K+DE  L
Sbjct: 253 DCLSHAYDLLRSWGLPTARHNKVVEGLDGVRAFITYYGDHRHSVEHEIDGVVVKLDEVPL 312

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R+PRW I+ K+  ++ ++RL+DI + +GRTG +TP A++EPV + G+ +  A
Sbjct: 313 QGRLGSTSRAPRWAIAWKYPPEEVNSRLIDIRVGVGRTGRVTPYAQVEPVTVAGSEVEFA 372

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D ++            + + +GD V++++AG+VIP+++  + + R    +PF+ P
Sbjct: 373 TLHNQDVVR-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGTERPFTMP 421

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG---- 487
           + CP C + +         +     RC    +C AQ  ER+ +   R   +IE  G    
Sbjct: 422 AECPECSTPLKPM-----KEGDIDLRCPNARSCPAQLRERIYYLAGRKCLDIENFGYVAA 476

Query: 488 --------------KQQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTK-----IEN 526
                         + + D F  + D    IR         L +R   +  +       N
Sbjct: 477 TALTQPLEPSEPPLRDEGDLFDLTVDQLLPIRSYVLDPDSGLPKRDPKTGEEKIVTFFAN 536

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             G    +   + D I   +   L R +  L IRHVG   A++LA+ + S +        
Sbjct: 537 KQGEAKKNTLAMLDHIEAAKQRPLARVLTGLSIRHVGPVAAQALAREFRSIERIEAATE- 595

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVS 644
                      L +   VG  IA ++  ++    +   V    +           E    
Sbjct: 596 ---------EELAQTEGVGPTIAASLKSWFAEEWHREIVRKWREAGVRMEEESTGEDEGP 646

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA Q 
Sbjct: 647 RPLEGLTVVVTGTLEHHTRDNAKEALQNQGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQA 706

Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726
            V +++E  F  LL Q     R
Sbjct: 707 KVPVLDEAGFAVLLDQGPDAAR 728


>gi|239982451|ref|ZP_04704975.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074]
          Length = 728

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 209/742 (28%), Positives = 343/742 (46%), Gaps = 61/742 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
              AR+    L +++  H   YY   +P++ D+E+D   R    +   +P L     P+ 
Sbjct: 11  PADARERHKHLAEQVEEHRFRYYVNDQPVVSDAEFDRQLRALTQLEEQYPPL---RTPDS 67

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G+       V H    LSL+  ++ E+L  +  R+ +       +   F  E K
Sbjct: 68  PTQKVAGQYETEFTSVQHRERMLSLDNAFDDEELAAWAERVAKEVGAPGYH---FLCELK 124

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG  GED++  +R I  IP  L  +  P ++E+RGEV+
Sbjct: 125 VDGLAVNLTYEHGRLTRAATRGDGRVGEDITPNVRTISDIPERLHGDDLPALVEIRGEVF 184

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               +F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G       
Sbjct: 185 FPMEEFEKLNARLVEAGEKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGAREGFTI 244

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                    +R  G P     +      G+ ++       R ++ ++IDG+V K+DE  L
Sbjct: 245 DCLSHAYDLLRSWGLPTARHNKVVEGLDGVRAFITYYGDHRHSVEHEIDGVVVKLDEVPL 304

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R+PRW I+ K+  ++ ++RL+DI + +GRTG +TP A++EPV + G+ +  A
Sbjct: 305 QGRLGSTSRAPRWAIAWKYPPEEVNSRLIDIRVGVGRTGRVTPYAQVEPVTVAGSEVEFA 364

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D ++            + + +GD V++++AG+VIP+++  + + R    +PF+ P
Sbjct: 365 TLHNQDVVR-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGTERPFTMP 413

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG---- 487
           + CP C + +         +     RC    +C AQ  ER+ +   R   +IE  G    
Sbjct: 414 AECPECSTPLKPM-----KEGDIDLRCPNARSCPAQLRERIYYLAGRKCLDIENFGYVAA 468

Query: 488 --------------KQQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTK-----IEN 526
                         + + D F  + D    IR         L +R   +  +       N
Sbjct: 469 TALTQPLEPSEPPLRDEGDLFDLTVDQLLPIRSYVLDPDSGLPKRDPKTGEEKIVTFFAN 528

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             G    +   + D I   +   L R +  L IRHVG   A++LA+ + S +        
Sbjct: 529 KQGEAKKNTLAMLDHIEAAKQRPLARVLTGLSIRHVGPVAAQALAREFRSIERIEAATE- 587

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVS 644
                      L +   VG  IA ++  ++    +   V    +           E    
Sbjct: 588 ---------EELAQTEGVGPTIAASLKSWFAEEWHREIVRKWREAGVRMEEESTGEDEGP 638

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA Q 
Sbjct: 639 RPLEGLTVVVTGTLEHHTRDNAKEALQNQGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQA 698

Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726
            V +++E  F  LL Q     R
Sbjct: 699 KVPVLDEAGFAVLLDQGPDAAR 720


>gi|118581474|ref|YP_902724.1| DNA ligase, NAD-dependent [Pelobacter propionicus DSM 2379]
 gi|166216225|sp|A1ATJ6|DNLJ_PELPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118504184|gb|ABL00667.1| DNA ligase, NAD-dependent [Pelobacter propionicus DSM 2379]
          Length = 704

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 273/725 (37%), Positives = 414/725 (57%), Gaps = 30/725 (4%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKP--IILDSEYDALKRRCDAIAHAF 62
           Q  P    +     + +  L Q I++++  YY+   P   I D EYD L +    +   F
Sbjct: 2   QNSPTTEQTKNIVAERIQELRQLIAHNNRLYYENIPPRREIHDYEYDELFKELQELESRF 61

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P+    +  + P   +GG ++    KV HS+P LS+E    +  +   +  I +   K D
Sbjct: 62  PEF---QSADSPTQIVGGSVSEGFKKVQHSVPMLSIEN-KPVTKMLSEVRSIIKEL-KDD 116

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
             SI    EPKIDG   +IRYEK + V AA RGDG  GED++  + +I  IP++L L+ P
Sbjct: 117 AISIDIVAEPKIDGLSCSIRYEKHQLVRAATRGDGLEGEDITVNVHSISEIPKILPLDAP 176

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
           E+IE+RGEVY+S +DF     +   +G KP  NPRNAA+G LR+L+P+   +R L FF +
Sbjct: 177 EVIEIRGEVYMSNSDFKQYTAQQNKIGEKPPENPRNAAAGSLRQLDPSVTASRPLRFFAY 236

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             G+ S  FAK Q++ LQ +R  GF V + +R   +   + SY+ EM+  RS L + IDG
Sbjct: 237 AWGEISNSFAKSQWDALQTLRGWGFKVCDDIRLLYSSDELNSYFEEMQERRSELDFTIDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYK++  SLQ+++G+  R+PRW  + KF  ++  T L +I I +GR+G LTPVA L PV
Sbjct: 297 IVYKLNSLSLQERVGQTNRAPRWAAAQKFPPEKRETLLQNITISVGRSGALTPVAELLPV 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  ++NATLHN+D ++            +D R+ D ++V+RAG+VIP+VV +++ +R
Sbjct: 357 RLLGTTVSNATLHNQDEVEC-----------KDFRIDDTIVVQRAGDVIPQVVSVVIEKR 405

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              + PF FPS CP+C S+ VR+         A  +CTGGL C AQ LERLKHFVSRDAF
Sbjct: 406 LSGSIPFVFPSACPVCGSKAVREPRE------AVWKCTGGLTCPAQSLERLKHFVSRDAF 459

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN-----ILGFGDVSVT 536
           NI+GLG++ ++ F+     A  + I      L           E        G+G++S  
Sbjct: 460 NIDGLGEKNIELFYNKGLLASPVDIFRLEEILSPPLLWQQKPSEFKPLQEWDGWGELSAN 519

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL+ +I  ++ I+L RFI++LGI  VG   A+ LA  Y+S  N+   +       ++ + 
Sbjct: 520 NLFRAIRTKQKITLYRFIYALGIPKVGEVTAKILADNYVSLDNWQSSMLKAAERESECYQ 579

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            LI +  +G ++A  IV F+    NI  +++L   +S         +SS I  K +VFTG
Sbjct: 580 HLISIDGIGSVVADEIVSFFAEAHNIQVLDSLKNYLSVEDFTKPAIISSNISGKIVVFTG 639

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L+K  R  A+    + GA V+  +SRKTDI+I G +PGSKL KAQ+LG+KI++E+++  
Sbjct: 640 ELEKRSRKAAKIEAEKFGAKVATDVSRKTDIVIAGTDPGSKLRKAQELGIKILSEDEWEH 699

Query: 717 LLQQY 721
           L+ + 
Sbjct: 700 LINEK 704


>gi|209527955|ref|ZP_03276440.1| DNA ligase, NAD-dependent [Arthrospira maxima CS-328]
 gi|209491614|gb|EDZ91984.1| DNA ligase, NAD-dependent [Arthrospira maxima CS-328]
          Length = 680

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 212/698 (30%), Positives = 344/698 (49%), Gaps = 49/698 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  ++L  L   +      YY    P + D  YD L R    +   +P+L     P+ P 
Sbjct: 12  EISQKLEQLRLTVQRASYAYYVLDAPTMEDGVYDRLYRELQELETQYPELI---SPDSPT 68

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G +       V H+I   SLE  +N+ +L+ +  +  RF          +  E KID
Sbjct: 69  QRVGEKPATQFESVRHNISLYSLENAFNMAELQAWDEKWRRFLGNWAAEDNNYICELKID 128

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYIS 194
           G+ I + Y  G  V  A RGDG +GED++  I+ I +IP  L   N P ++EVRGE ++ 
Sbjct: 129 GSAIALTYHDGILVRGATRGDGVTGEDITQNIKTIRSIPLKLHLDNPPPVVEVRGEAFLY 188

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKG 253
              F  +N E    G   +ANPRNAA+G LR+L+      R+L+FF + L          
Sbjct: 189 NRIFAEINQERQKNGEPLFANPRNAAAGTLRQLDSRIVAARHLDFFAYTL-HLDSPNLHD 247

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            ++ L+ +  +GF VN   +   +   +  Y+N  ++ R  LPY  DG+V K++  SLQK
Sbjct: 248 HWDCLELLPKMGFKVNPNRQLCQSLLEVQQYFNTWETQRRELPYMTDGVVVKLNSLSLQK 307

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           QLGE  + PRW I+ K+  ++  T+++ +  Q+GRTG LTPVA LEP+ + G  +  ATL
Sbjct: 308 QLGETRKFPRWAIALKYPAEELPTKIISVTFQVGRTGALTPVAELEPIQLAGTTVKRATL 367

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+D +  L           D+ +GD V+V++AGE+IP+VV ++ + R   A+  + P+ 
Sbjct: 368 HNQDRLTEL-----------DLHIGDTVIVRKAGEIIPEVVRVLPDLRPTGAKLVTMPTH 416

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C   VV+          A  RC    +C A     + H+  R A +I G+G++ +  
Sbjct: 417 CPECGETVVKTPPE------AVTRCINS-SCPAIVRGSIIHWCGRRALDINGIGEKLVQQ 469

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +++     +R  AD++ L   Q  +      +   G  S   + ++I   +     R 
Sbjct: 470 LVETQ----LVRSVADLYHLNMDQLVA------LERQGQKSAQKILEAIAASKKQPWHRV 519

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           ++ LGIR+VG   A  LA+ + S Q+ A   +            +  V  +G  IA ++ 
Sbjct: 520 LYGLGIRYVGEVNAELLAQNFPSCQSLAAASSA----------QIEGVYGIGAEIATSVY 569

Query: 614 EFYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           +++QNP NI   + L +        PS        +     K  V TGTL  + R +A+ 
Sbjct: 570 QWFQNPANISLCDRLEQSGLQLASVPSTALKSTPQAQPFAGKTFVLTGTLPTLTREEAKS 629

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
            + + G  V+  +++K D +++GD PGSKL KAQ LG+
Sbjct: 630 IIEKAGGKVTNSVTQKVDYLLLGDKPGSKLAKAQNLGI 667


>gi|162448184|ref|YP_001621316.1| DNA ligase [Acholeplasma laidlawii PG-8A]
 gi|190359222|sp|A9NHW0|DNLJ_ACHLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|161986291|gb|ABX81940.1| DNA ligase, NAD-dependent [Acholeplasma laidlawii PG-8A]
          Length = 659

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 227/705 (32%), Positives = 364/705 (51%), Gaps = 47/705 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +  +  L ++I+  +  Y+   +PII D  YD L R    +   +P+    +D   P 
Sbjct: 2   DIQTRIKELRKQINEANYLYHTKDQPIISDFVYDGLMRELIELETKYPEY---DDETSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            KIGG +  +  K TH++P +SL  I+N E+L+ F  RI +        +  FT E KID
Sbjct: 59  KKIGGVVLDAFKKHTHTVPMMSLSNIFNKEELKVFYDRIQKVI-----PNTSFTTELKID 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ YEKG F  AA RG+G  GED++  ++ I T+P  L L+ P  IEVRGE+Y+S 
Sbjct: 114 GLAVTLIYEKGIFKKAATRGNGVVGEDITENVKTIKTLP--LQLSKPLDIEVRGEIYMSH 171

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
             F  +N E        + NPRNAA+G +R+L+   + +            +  F   Q 
Sbjct: 172 KTFKEVNLERANSNLDLFVNPRNAAAGTVRQLDSKVVAKRRLDLFTYTVVGASNFNSTQK 231

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+ +  LGFPVN   +  +    +    +    +R TLPYD DG+V KV++F   + +
Sbjct: 232 ETLEFLSELGFPVNPHYKLVDNLDALSDAIDNYDILRKTLPYDTDGVVIKVNQFEHYETI 291

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+ P++  ++KF  ++  T++ DI  Q+GRTG++TPVA L PV I G+L++ ATLHN
Sbjct: 292 GYTAKYPKYAGAYKFEAEKQITKVEDIIFQVGRTGVITPVAVLTPVFISGSLVSRATLHN 351

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           EDYI             +DIR+ D+VLV +AGE+IP+V+++++  R  +  PF     CP
Sbjct: 352 EDYI-----------LNKDIRIDDQVLVHKAGEIIPEVIEVVLGSRT-NQAPFEMVKHCP 399

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C+S +VR                    C  + +  L HF SR A +I+ LG++ ++   
Sbjct: 400 ACESNLVRKQGEAD-------YYCANDNCPGKNVFGLIHFASRAAMDIDTLGEKVVELLH 452

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   ++   DI+ L   +     ++E + GFG   V  L ++I   +  +L+R IF
Sbjct: 453 DQT----YLQTIPDIYKLHTFKD----QLEELPGFGKKKVEKLLNAIEASKMQTLDRLIF 504

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGI++VGA++A++L  +Y S    A             +  LI++P +G  IA ++  +
Sbjct: 505 GLGIKNVGAKVAKTLLNHYPSITLLADA----------KYEDLIQIPDIGPEIADSVTTY 554

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           + N  N   +E L         + +   +     K  V TGTL    R +A + + +LG 
Sbjct: 555 FSNESNQHMLEELKNLGLQMTYKIDVVTTHPFNGKTFVVTGTLDDFSRTEASDIIEKLGG 614

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            VS  +S+KTD ++ G   GSKL KA +LG+++M+E  F   + +
Sbjct: 615 KVSGSVSKKTDYVLAGKEAGSKLTKALELGIEVMDEATFKVKINE 659


>gi|153806306|ref|ZP_01958974.1| hypothetical protein BACCAC_00565 [Bacteroides caccae ATCC 43185]
 gi|149130983|gb|EDM22189.1| hypothetical protein BACCAC_00565 [Bacteroides caccae ATCC 43185]
          Length = 666

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 222/708 (31%), Positives = 347/708 (49%), Gaps = 49/708 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+     D N P 
Sbjct: 2   DIKEKIEGLRAELHRHNYNYYVLNAPEISDKEFDEKIRELQDLEQAHPEYK---DENSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N +  +V H  P LSL   ++  ++  F  R+ +      +       E K D
Sbjct: 59  MRVGSDINKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKAL----NEDFEICCEMKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           GT I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ + 
Sbjct: 115 GTSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPSSFEIRGEILMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
              F  LN E  A     +ANPRNAASG L+  N   +                +   G 
Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPCDGH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK 
Sbjct: 235 YENLQEAAKWGFKISDLTRKCKTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKN 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LH
Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSF 433
           N D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F + 
Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSSMLGEKVRFITN 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S++VR          AAH C    AC  Q   +++HF+SR A NI+GLG + +D 
Sbjct: 404 CPECNSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDM 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F++       I   AD++ L             +   G+ S  N+   I + + +  ER 
Sbjct: 458 FYR----LGLIHNTADLYDLSVENIKG------LDRMGEKSAENIITGIAQSKAVPFERV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG  +A+ +AK + +     Q           D  +LI +  +G+ IAQ+I+
Sbjct: 508 IFALGIRFVGETVAKKIAKSFENIDELQQA----------DLETLISIDEIGEKIAQSIL 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVT 671
            ++ N  N   +  L           E       ++  + +V +G      R + +E + 
Sbjct: 558 SYFANESNCELINRLKAAGLQLYRTEEDLSEYTDKLAGQSIVISGVFTHHSRDEYKELIE 617

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + G      +S KT  I+ G+N G +KLEKA++LG+ I++E++FL L+
Sbjct: 618 KNGGKNVGSISAKTSFILAGENMGPAKLEKAKKLGITILSEDEFLKLI 665


>gi|256844676|ref|ZP_05550161.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 125-2-CHN]
 gi|256613217|gb|EEU18421.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 125-2-CHN]
          Length = 668

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 208/715 (29%), Positives = 363/715 (50%), Gaps = 51/715 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +++++A+KE +SL ++++   + YY    P + D+ YD    R   +   FP++   
Sbjct: 1   MAEITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GG+++    KV H IP LS+  +++  +L+ F  R+ +       + + +
Sbjct: 59  -TPDSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRMQKLVG----HPVEY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ YE GK V A+ RG+G+ GEDV+A  + I  IP+ L   +    EVR
Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPEPL--TTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+SK  F  LN E    G   +ANPRNAA+G LR+L+P    +              
Sbjct: 172 GECYMSKEAFAKLNAEREEQGLAVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ +QKM  LGF  N   R+  T   + ++ +E  + R++L Y IDG+V K+D+
Sbjct: 232 EEITSQHQAIQKMHDLGFHTNETGRKLKTLDEVFAFIDEYTAKRNSLTYGIDGIVLKIDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             ++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  +
Sbjct: 292 LGIEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN DY+             + IR+GD V + +AG++IP++ ++++ +R  D+  +
Sbjct: 352 ARASLHNPDYL-----------NEKGIRIGDTVKLHKAGDIIPEISEVVMAKRSADSVAY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG 
Sbjct: 401 QIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +      +     +   AD++ L             +  F + S+ NL  +++  +  
Sbjct: 454 KIVKQLIAKD----LVHNVADLYHLTADDL------AQLDHFKEKSINNLLTALDNSKQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  I  LGI HVGA+ AR +A+ + +                 D   +  +  +G  I
Sbjct: 504 SVELLITGLGIDHVGAKAARLIAQKFKNLAKIMSL----------DVQEIASIDTIGMTI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           A+++  ++  P     ++ L +              +   +  ++K +V TG L+   R 
Sbjct: 554 AESMTTYFAQPEAQKVIDELRESGLNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTRS 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  + +  LGA V+  +S KTD +I G + GSK  KAQ LGV ++ EE+ +  ++
Sbjct: 614 EFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAIAQIE 668


>gi|227877013|ref|ZP_03995105.1| DNA ligase [Lactobacillus crispatus JV-V01]
 gi|256850560|ref|ZP_05555986.1| DNA ligase [Lactobacillus crispatus MV-1A-US]
 gi|227863384|gb|EEJ70811.1| DNA ligase [Lactobacillus crispatus JV-V01]
 gi|256712583|gb|EEU27578.1| DNA ligase [Lactobacillus crispatus MV-1A-US]
          Length = 668

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 207/715 (28%), Positives = 363/715 (50%), Gaps = 51/715 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +++++A+KE +SL ++++   + YY    P + D+ YD    R   +   FP++   
Sbjct: 1   MAEITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GG+++    KV H IP LS+  +++  +L+ F  R+ +       + + +
Sbjct: 59  -TPDSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRMQKLVG----HPVEY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ YE GK V A+ RG+G+ GEDV+A  + I  IP+ L   +    EVR
Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPEPL--TTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+SK  F  LN E    G   +ANPRNAA+G LR+L+P    +              
Sbjct: 172 GECYMSKEAFAKLNAEREEQGLAVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ +QKM  LGF  N   R+  T   + ++ +E  + R++L Y IDG+V K+D+
Sbjct: 232 EEITSQHQAIQKMHDLGFHTNETGRKLKTLDEVFAFIDEYTAKRNSLTYGIDGIVLKIDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             ++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  +
Sbjct: 292 LGIEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN DY+             + +R+GD V + +AG++IP++ ++++ +R  D+  +
Sbjct: 352 ARASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVMAKRPADSVAY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG 
Sbjct: 401 QIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +      +     +   AD++ L             +  F + S+ NL  +++  +  
Sbjct: 454 KIVKQLIAKD----LVHNVADLYHLTADDL------AQLDHFKEKSINNLLTALDNSKQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  I  LGI HVGA+ AR +A+ + +                 D   +  +  +G  I
Sbjct: 504 SVELLITGLGIDHVGAKAARLIAQKFKNLAKIMSL----------DVQEIASIDTIGMTI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           A+++  ++  P     ++ L +              +   +  ++K +V TG L+   R 
Sbjct: 554 AESMTTYFAQPEAQKVIDELRESGLNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTRS 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  + +  LGA V+  +S KTD +I G + GSK  KAQ LGV ++ EE+ +  ++
Sbjct: 614 EFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAIAQIE 668


>gi|307609752|emb|CBW99264.1| DNA ligase [Legionella pneumophila 130b]
          Length = 650

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 237/690 (34%), Positives = 366/690 (53%), Gaps = 46/690 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +  ++ + +L+++I  +D  YY   +P++ D+EYD   +        +P       P
Sbjct: 1   MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G  + +   V H  P LSL  ++  ++L+ FI R      +  +  + F  E
Sbjct: 58  DSPTQRVSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAIEKLDE-PNQQLVFACE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  + + YE G   +AA RGDG  GE+++A I+ I ++P      N P++IEVRGE
Sbjct: 117 PKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG-KTSE 248
           VYI K DF A N     +G K +ANPRNAA+G LR+LNP     R L  + +G+G     
Sbjct: 177 VYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISANRPLAIYCYGIGAFEDY 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L  ++  GF V+   R+A    G + YY  M + R+ LP++IDG+VYK+D 
Sbjct: 237 KLPNSHLEQLNLLKEFGFRVSPETRRAVGIEGCLDYYQYMLAKRNQLPFEIDGVVYKIDS 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ+QLG  +R+PR+  +HKF   +  TRL+ +D Q+GRTG +TPVARLEPV++GG  +
Sbjct: 297 ISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I             +DIR+GD V+++RAG+VIP+VV +I+ +R  +A+  
Sbjct: 357 SNATLHNFDEITR-----------KDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMI 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S VVR+ +       A  RC GGL C AQ    + HF SR A  IEGLG 
Sbjct: 406 ELPKNCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGS 459

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +D           +   AD++ L          + ++   G+ S  NL  ++ K +  
Sbjct: 460 VLIDQLVDE----GIVHHLADLYEL------DLQTLASLPRMGEKSAKNLLSALEKSKKT 509

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +  RF+++LGIR +G   AR LA++Y   +                   L+ +  +G + 
Sbjct: 510 TFNRFLYALGIREIGEVGARVLAEHYCDVEGLKAAT----------IEELMTLNDIGPVA 559

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  +V F+    N+  ++ LLK     P   + + N  +    K +V TGTL  + R +A
Sbjct: 560 ASHVVHFFAQAHNLEVIDRLLKLGIHWPKSEKIQVNQQNPFFGKTVVLTGTLSTMGREEA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
           +  +  LGA VS  +S KTD ++ G   GS
Sbjct: 620 KAKLLALGAKVSGSVSSKTDYVVAGSEAGS 649


>gi|258508011|ref|YP_003170762.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus GG]
 gi|257147938|emb|CAR86911.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus GG]
 gi|259649339|dbj|BAI41501.1| DNA ligase [Lactobacillus rhamnosus GG]
          Length = 674

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 243/716 (33%), Positives = 372/716 (51%), Gaps = 51/716 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A  E++ L ++++     YY    P + D+ YD   R   A+  AFP L  
Sbjct: 5   PAAQFTLEEAEAEIAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFPKLV- 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+         +++ 
Sbjct: 64  --TPDSPTQQVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARMQANVG----HAVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE G+ V  + RGDG+ GEDV+  +  I ++P   +L  P  +EV
Sbjct: 118 YNVELKIDGLALSLIYENGRLVQGSTRGDGNVGEDVTKNVLTIASVP--KTLKRPLSLEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE Y+ K  F  LN    A G  P+ANPRNAA+G LR+LNP     R L+ F++ L   
Sbjct: 176 RGECYMPKAAFAKLNARKEADGDTPFANPRNAAAGSLRQLNPKITAGRELDTFIYTLIDA 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K Q+E +  M+ LGF  N     A+    I +Y  +  S R  LPY IDG+V KV
Sbjct: 236 DRFNVKTQHEAIAFMQDLGFTTNPSSEVASDMQAIDAYITKYTSDRDALPYGIDGIVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G 
Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAKTVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V +R  +  
Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVKKRPANTP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   P  CP C  ++V   +        A RC   + C AQ  E+L HF SR+A NI+GL
Sbjct: 405 PAPIPEKCPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +      +     +   AD++ L           E +  F + S+ NL ++IN  R
Sbjct: 458 GPKIIAQLQAKK----LVTDVADLYRLTATDL------EKLDKFKEKSINNLLNAINNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+ER IF LGIRHVG + AR LA+++ S                 D   +  +P +G 
Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGSLDELMAA----------DQDQVAAIPNIGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            IA+A+V +++       VE L         +         S +  K +V TG   +  R
Sbjct: 558 TIAEAVVTYFKTDTVKKLVEQLRSAGVNLRYTGPTRPAVSDSFVSGKTVVITGKFAEFSR 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  + + QLGA V+  +S+KTD++I GD  GSKL KAQ L V IM+E   L  L+
Sbjct: 618 PELTKRLEQLGAKVTGSVSKKTDLVIAGDAAGSKLTKAQDLNVPIMDETALLTNLK 673


>gi|227488027|ref|ZP_03918343.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227091889|gb|EEI27201.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 679

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 209/708 (29%), Positives = 344/708 (48%), Gaps = 50/708 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
                L  ++ YH D YY    P I D+E+D L  +   +    P L     P+ P  ++
Sbjct: 7   ARWEELAAQVRYHRDKYYN-GTPEITDAEFDVLFSQLQQLEAEHPGL---RAPDSPTLEV 62

Query: 79  GGEMNLS--LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           G           + H     SL+ +++ ++L +++ R           S  +++E KIDG
Sbjct: 63  GAPSPEGSSFENIAHLERMYSLDNVFSKDELEQWLIRT---------PSDTYSVELKIDG 113

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEVY 192
             I + Y  G+   AA RGDG  GE+++A  R I  IP  L       IP ++EVRGEVY
Sbjct: 114 VSIDLVYRDGELATAATRGDGTVGEEITANARMITGIPDHLQENDAFPIPSVLEVRGEVY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFA 251
           I+ +DF  +N++     +KP+ANPRNAA+G +R+ +      R L    HG+G    I  
Sbjct: 174 IAIDDFPLVNEQRQLENKKPFANPRNAAAGSMRQKDPQAVKKRKLTLVCHGIGAAEGISV 233

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           + Q E  + +   G PV+      ++   +     +    R    +++DG+V KVD    
Sbjct: 234 ESQTEAYKALAAFGLPVSEYTTVVHSHEEVHEMVEKWADHRHDAVFEMDGMVVKVDNREQ 293

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  +R+PRW I++K+  ++A T+L+D+ + +GRTG +TP A +EPV + G+ +  A
Sbjct: 294 QRALGATSRAPRWAIAYKYPPEEAVTKLIDVRVGVGRTGRVTPFAIMEPVEVAGSTVEMA 353

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+  +             + + +GD+V++++AGEVIP+V+  + + R    +PF FP
Sbjct: 354 TLHNQSEVNR-----------KGVLIGDQVVIRKAGEVIPEVLGPVADLRDGTERPFVFP 402

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C +++         +  A  RC    +C  Q   RL++   R  F+IE LG++  
Sbjct: 403 TLCPQCGTKLA-----PAKEEDADWRCPNTRSCPGQLAGRLEYIAGRGVFDIEALGEKAA 457

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
               ++      +   AD+FTL       +    N  G  + +   L   +  ++   L 
Sbjct: 458 ADLVRT----GILTDEADLFTLTEDDLLDSRVYTNSKGAVNAAGKKLIAGLKTQKETDLW 513

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R I  L IRHVG   AR+LA+ + S     +               L     VG +IA +
Sbjct: 514 RVITGLSIRHVGPTAARALAREFGSMDAIRKATE----------EELAATEGVGGVIAAS 563

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           IV+++    +   V+A  +          +     +E   +V TG+L+   R  A+E + 
Sbjct: 564 IVDWFSVDWHRAIVDAWAEAGVTMEDERGEAKEQTLEGLTIVVTGSLENYTRDGAKEAII 623

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + G   S  +S+KTD ++VG N GSK  KA++LG  I+NE+QF  LL 
Sbjct: 624 ERGGKASGSVSKKTDYVVVGANAGSKAAKAEELGRPIINEQQFEELLA 671


>gi|111023430|ref|YP_706402.1| NAD-dependent DNA ligase LigA [Rhodococcus jostii RHA1]
 gi|123045472|sp|Q0S2J2|DNLJ_RHOSR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110822960|gb|ABG98244.1| DNA ligase (NAD+) [Rhodococcus jostii RHA1]
          Length = 696

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 223/708 (31%), Positives = 359/708 (50%), Gaps = 42/708 (5%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            R+  + L +E+  H   YY    PII D E+D L    + + + +PDL     P+ P  
Sbjct: 15  VREHWNELAEEVRQHQFRYYVRDAPIISDGEFDVLLGELNDLENQYPDL---RTPDSPTQ 71

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
            +GG  +       H    LSL+ ++  ++LR +I+R+     ++    + +  E KIDG
Sbjct: 72  LVGGGFSTDFASADHLERMLSLDNVFATDELRTWISRVE----QETGPDLHYLCEVKIDG 127

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEVY 192
             + + YE G+   AA RGDG +GE+V+   R I  IP  L+      IP ++EVRGEV+
Sbjct: 128 VALNLVYENGRLDRAATRGDGRTGEEVTLNARTIDDIPEKLTGTDEYPIPALLEVRGEVF 187

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF ALN  ++  G+ P+ANPRN+A+G LR+ NP     R L    HGLG++     
Sbjct: 188 FRLEDFAALNAALVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGLGRSEGFEP 247

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             QY+    +   G PV+    +      +V         R  + ++IDGLV KVDE SL
Sbjct: 248 VSQYDAYTALAAWGLPVSTHTARVTGADAVVDRVQYWGEHRHDVEHEIDGLVVKVDETSL 307

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++A+T+LLDI + +GRTG +TP A +EPV + G+ ++ A
Sbjct: 308 QRRLGSTSRAPRWAIAYKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVTVAGSTVSLA 367

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+V+  +V+ R  D   F  P
Sbjct: 368 TLHNGSEVKR-----------KGVLIGDTVVLRKAGDVIPEVLGPVVDARTGDEYEFVMP 416

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +         +  A  RC     C AQ  ER+ H   R AF+IE LG +  
Sbjct: 417 THCPECDTPLA-----PAKEGDADIRCPNQQYCPAQLRERVFHVAGRGAFDIEVLGYEAA 471

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
               +++     I    D+F+L       T+      G    +   L D+++  ++  L 
Sbjct: 472 TSLLEAKA----IGDEGDLFSLTEDDLLKTSLFRTKAGGLSANGRRLLDNLDSAKDKPLW 527

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R + +L IRHVG   AR+LA  + S     +               L  V  VG  IA A
Sbjct: 528 RVLVALSIRHVGPTAARALAGEFGSLARIRES----------SVEELAAVDGVGGTIAAA 577

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           + E++    +   VE             ++++   +E   +V TG+L+   R +A+E + 
Sbjct: 578 VAEWFGVDWHQQIVEKWSAAGVRMEDERDESIPRNLEGLSIVVTGSLETFSRDQAKEAIL 637

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             G   +  +S+KT  ++VG++PGSK +KA +LGV +++E+ F  LL+
Sbjct: 638 IRGGKAAGSVSKKTAFVVVGESPGSKHDKAVELGVPVLDEDGFRRLLE 685


>gi|163782033|ref|ZP_02177032.1| D-tyrosyl-tRNA deacylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882565|gb|EDP76070.1| D-tyrosyl-tRNA deacylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 715

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 235/715 (32%), Positives = 374/715 (52%), Gaps = 52/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E+A++ +  L + I+YHD  YY  + P+I D EYD L R    +   +P+L     P+ 
Sbjct: 29  KEEAQEYVQELREVINYHDYKYYVQASPVISDYEYDQLFRALRDLEKKYPELI---TPDS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++  E+  +   V H  P LSL+  +  E+LR F  R+           + +++EPK
Sbjct: 86  PTQRVASEITGAFPTVRHYTPMLSLDNAYTEEELRDFDRRVRELTGLDV---VEYSVEPK 142

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEV 191
            DG  I + Y    FV  A RGDG +GED++  +R + TIP     +   I  IE+RGEV
Sbjct: 143 YDGAGIALLYRDDLFVRGATRGDGETGEDITNNLRTVRTIPLKAEFSRFGIRLIELRGEV 202

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD---ITRYLNFFVHGLGKTSE 248
            I++ +F  +N+E +  G  P+ANPRNAA+G +R  NP +          +     +   
Sbjct: 203 LINREEFRKMNEERLEEGLPPFANPRNAAAGSIRLQNPAEVAKRKLDAVVYQVSYVEPES 262

Query: 249 IFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 YE ++ +  LGF      ++       ++ Y  E +  R   PY+IDG+V KV+
Sbjct: 263 RHPNTHYEAIEMLHLLGFKTPFPDMKLCKGIDEVIEYCREWEEKREEYPYEIDGMVVKVN 322

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                + LG  +  PRW I+ KF  KQA+T+L+D+  Q+GR G +TPV +LEPV IGG +
Sbjct: 323 RKEYYEVLGFTSHHPRWAIAFKFKPKQATTKLIDVVFQVGRVGTITPVGKLEPVEIGGVV 382

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +++ +L NED+I+            +DIR+GD VLV+RAG+VIP VV++I   R  D  P
Sbjct: 383 VSSVSLFNEDFIR-----------EKDIRIGDLVLVERAGDVIPYVVEVIKEARDGDEVP 431

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             FP  CP C S++V+           A RC   ++C AQ + RLKH+ SR+A +I GLG
Sbjct: 432 IEFPDRCPSCGSKLVKLPGE------VAWRCIN-ISCPAQVVLRLKHWGSREAMDIRGLG 484

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +      ++       ++   D++ L+            + GF + S  NLY++I + +N
Sbjct: 485 EATSKALYEK----GLVKDVGDLYYLKVVDLMK------LPGFAEKSAMNLYNAIQESKN 534

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L+R ++ LGIR+VG   A+ L++   S  +                  L  +  +GD+
Sbjct: 535 RGLDRVLYGLGIRYVGLTTAKKLSQVIDSIWDLRD----------MPVEKLEAIEGIGDV 584

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++I EF+    N+  +E L +     + R +      ++    VFTGTL+   R +A 
Sbjct: 585 VARSIKEFFSREENVKVIEKLDRAGV-KLRRTKLEKEGPLKGMVFVFTGTLRCCSRERAG 643

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQY 721
           E V  LG   S  ++ KT  ++VG+ PG +KL +A+QLG+K++NEE FL +++ Y
Sbjct: 644 ELVESLGGTFSNSVTSKTTYLVVGEEPGRTKLRRAEQLGIKLLNEEDFLNMVKDY 698


>gi|319937197|ref|ZP_08011604.1| DNA ligase [Coprobacillus sp. 29_1]
 gi|319807563|gb|EFW04156.1| DNA ligase [Coprobacillus sp. 29_1]
          Length = 662

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 236/701 (33%), Positives = 379/701 (54%), Gaps = 49/701 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L  +++ ++ ++  YY    P + D EYD L +   AI +  P+   +   + P  ++
Sbjct: 4   ERLIEIKKLLNEYNYQYYVLDNPSVSDQEYDRLMQELQAIENQHPEWLTA---DSPSQRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++  S  K+TH    LSL  I+N ++L  F  R+          ++ +  E KIDG  
Sbjct: 61  GGQVLDSFTKITHERMMLSLGNIFNEDELMAFDERVRE-----TYPNVEYVCELKIDGLA 115

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +++ Y  G+  YAA RGDG  GED++  ++ I +IP  L+++     EVRGE+++ K  F
Sbjct: 116 VSLVYADGRLDYAATRGDGTVGEDITHNVKTIKSIP--LTIDYDGDFEVRGEIFMPKKSF 173

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257
             LN+E    G   +ANPRNAA+G +R+L+ T    R L+ F++ +   +E+      E 
Sbjct: 174 NELNEERAKAGEALFANPRNAAAGSVRQLDSTIAAKRKLDAFLYMVPTATEVGCTTHKEA 233

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L  ++ LGF  N     ++    + ++  EM   R TLPY+IDG+V KV+    Q +LG 
Sbjct: 234 LDYIKELGFKTNPMTHVSSDIQDVWAFIQEMTEKRDTLPYEIDGIVIKVNNLEEQVRLGY 293

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+ P+W I++KF  ++  T+L DI   IGRTG +TP A LEPV + G+ +  ATLHNED
Sbjct: 294 TAKVPKWAIAYKFPAEEVVTKLKDIIFTIGRTGQITPNAILEPVRVAGSTVQRATLHNED 353

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            +K            +DIR+GD V+V++AG+VIP+VV  +   R    + F    +CP C
Sbjct: 354 NVK-----------NKDIRIGDYVVVRKAGDVIPEVVRSLKERRDGSEEKFKMIEYCPHC 402

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            SR+VR  N       AA+ C     C  +++ER+ HF SRDA NIEGLG++ ++ F+  
Sbjct: 403 GSRLVRKDNE------AAYYCLNDQ-CDFKKIERIIHFASRDAMNIEGLGEKIIEQFYN- 454

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++   DI+ L + +Q    +I +I GFG  S+ NL  +I K +  S+E+ +F L
Sbjct: 455 ---LGFVKNIEDIYDLYKHEQ----EIMDIEGFGKKSMDNLVAAIEKSKENSMEKLLFGL 507

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI+ +GA++A +L+K + S     +               L+ +  VG+ I Q+I  F  
Sbjct: 508 GIKGIGAKMADNLSKEFKSIDAMLEASTA----------KLLSIKDVGETIVQSINHFRN 557

Query: 618 NPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +P ++  +  L           E      S    + +  TGTL+ + R + ++Y+ +LGA
Sbjct: 558 DPASLELLMNLKALGLNMNYLKETTLLQESIFNGQTVCITGTLELMTRKEMKDYLARLGA 617

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            V+  +S+ TD +I G + GSKLEKA QLGV ++ EE+F  
Sbjct: 618 NVTGSVSKNTDFLICGRDAGSKLEKANQLGVTVLTEEEFRK 658


>gi|259502571|ref|ZP_05745473.1| DNA ligase [Lactobacillus antri DSM 16041]
 gi|259169461|gb|EEW53956.1| DNA ligase [Lactobacillus antri DSM 16041]
          Length = 678

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 231/718 (32%), Positives = 379/718 (52%), Gaps = 48/718 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            P++ L++  A++E++ L Q+++     YY+   P + D  YD   +R   +   FP+L 
Sbjct: 5   TPVDQLTLAAAKQEIAPLRQQLTKWGREYYEQDNPSVEDYVYDRAYQRLVELEQRFPELK 64

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
            S   + P   +GG     L KVTH IP LS+  +++I++L  F  R         + + 
Sbjct: 65  TS---DSPTQHVGGGPTGELTKVTHEIPMLSMGDVFSIDELMDFNQRQQD--NDDVNVTP 119

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            + LE KIDG  +++ YE G+ V  + RG+G+ GEDV+A +  I ++P  L   +   +E
Sbjct: 120 EYNLELKIDGLSLSLVYENGRLVQGSTRGNGNIGEDVTANVMTIKSVPHQLPEPLS--LE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
            RGE Y+ K  F+ LN E  A G   +ANPRNAA+G LR+L+P     R L  F++ + +
Sbjct: 178 FRGECYMPKESFVKLNQEREAAGLPIFANPRNAAAGSLRQLDPQVTARRDLATFMYYVPE 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             ++  + Q   L +MR LGF VN   R   +   I  Y  E  + R  L Y IDG+V K
Sbjct: 238 YQKLGVRTQAAALNRMRELGFSVNPHNRVVRSRQEITDYIEEYTAQRDQLSYGIDGIVEK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++   +  LG   + PRW I++KF  ++ +T + +I   +GRTG +TP A ++P+ + G
Sbjct: 298 VNDLDTENALGNTVKVPRWEIAYKFPPEEQATVVREIVWTVGRTGNVTPTAVMDPIQLAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ A+LHN DY++            +DIR+GD V + +AG++IP++  + + +R  D+
Sbjct: 358 TTVSRASLHNPDYLR-----------EKDIRLGDTVYLHKAGDIIPEISRVDLKKRPADS 406

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           QP+  P+ CP+C S +V            A RC   + C AQ  E L HF SR+A NI+G
Sbjct: 407 QPYQVPTTCPVCGSDLVHLDGE------VALRCVNPM-CPAQIKEGLAHFASRNAMNIDG 459

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + +   +  +     +   AD+++L   Q  +      +  FGD S TNL  SI   
Sbjct: 460 LGPKIIQQLWDKQ----LVHDVADLYSLTHDQLLT------LDKFGDKSATNLLTSIANS 509

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           RN S+ER +F LGIRHVGA+ AR + +++ + +         +A              +G
Sbjct: 510 RNNSVERLLFGLGIRHVGAKAARLIMEHFQTLERLMAANAEEVAAV----------DGIG 559

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQR 663
             I +++  ++ N + +  V+ L          G      +SE   +++V TG L+++ R
Sbjct: 560 PTIGESVQTYFANEQVVTLVDELRAAGVNFDYHGASAPVAASEWNGRRVVLTGKLEELTR 619

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
             A+ ++   GA V+  +S+KTDI+I G   GSKL KAQ LG+ + +E +F   +++ 
Sbjct: 620 TDAKNWLEAHGAKVTGSVSKKTDIVIAGTAAGSKLTKAQDLGITVWDEARFAQAMKEE 677


>gi|262047040|ref|ZP_06019999.1| DNA ligase, NAD-dependent [Lactobacillus crispatus MV-3A-US]
 gi|293381897|ref|ZP_06627865.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 214-1]
 gi|260572617|gb|EEX29178.1| DNA ligase, NAD-dependent [Lactobacillus crispatus MV-3A-US]
 gi|290921544|gb|EFD98578.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 214-1]
          Length = 668

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 206/715 (28%), Positives = 362/715 (50%), Gaps = 51/715 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +++++A+KE +SL ++++   + YY    P + D+ YD    R   +   FP++   
Sbjct: 1   MAEITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GG+++    KV H IP LS+  +++  +L+ F  R+ +       + + +
Sbjct: 59  -TPDSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRMQKLVG----HPVEY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ YE GK V A+ RG+G+ GEDV+A  + I  IP+ L   +    EVR
Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPEPL--TTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+P    +              
Sbjct: 172 GECYMGKEAFAKLNAEREEQGLVVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ +QKM  LGF  N   R+  T   + ++ +E  + R++L Y IDG+V K+D+
Sbjct: 232 EEITSQHQAIQKMHDLGFHTNETGRKLKTLDEVFAFIDEYTAKRNSLTYGIDGIVLKIDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             ++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  +
Sbjct: 292 LGIEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN DY+             + +R+GD V + +AG++IP++ ++++ +R  D+  +
Sbjct: 352 ARASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVMAKRPADSVAY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG 
Sbjct: 401 QIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +      +     +   AD++ L             +  F + S+ NL  +++  +  
Sbjct: 454 KIVKQLIAKD----LVHNVADLYHLTADDL------AQLDHFKEKSINNLLTALDNSKQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  I  LGI HVGA+ AR +A+ + +                 D   +  +  +G  I
Sbjct: 504 SVELLITGLGIDHVGAKAARLIAQKFKNLAKIMSL----------DVQEIASIDTIGMTI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           A+++  ++  P     ++ L +              +   +  ++K +V TG L+   R 
Sbjct: 554 AESMTTYFAQPEAQKVIDELRESGLNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTRS 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  + +  LGA V+  +S KTD +I G + GSK  KAQ LGV ++ EE+ +  ++
Sbjct: 614 EFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAIAQIE 668


>gi|166216285|sp|Q03JF6|DNLJ_STRTD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 652

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 219/703 (31%), Positives = 359/703 (51%), Gaps = 55/703 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K +  L  +++ +   YY    P + D+EYD L R    +    P+L ++   + P ++
Sbjct: 2   EKRMKELVDKLNQYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQA---DSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  RI       +  +  +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRIK-----SEFPNADYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP  L L+ P  I VRGE Y+ + +
Sbjct: 114 SISLTYVDGILQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAE 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVHGLGKTSEIFAKGQY 255
           F  +N +    G   +ANPRNAA+G LR+L+   +       FF    G T  +    Q 
Sbjct: 172 FERINTQRQENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFFYQEAGPTERLT---QN 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++L ++  LGF VN      ++   I  +   +   R  L YDIDG+V KV+  ++Q++L
Sbjct: 229 DVLNEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDHLAYDIDGVVIKVNSLAMQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++PRW I++KF  ++   +LL +D Q+GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAKLLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR+GD V+V +AG++IP V+ ++ ++R         PS CP
Sbjct: 349 VDYI-----------TEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQE-AMPVPSQCP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S ++   +        A RC    +C AQ  E L HF SRDA NI G+G   ++  F
Sbjct: 397 SCGSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNISGMGPSVVEKLF 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           K+E     ++  ADI+ L  +          + GF + S   LY +I   +  S E+ ++
Sbjct: 450 KAE----LVKEVADIYGLNSQDF------LQLEGFKEKSAEKLYAAIQASKENSAEKLLY 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIRHVGA++++ L + + + +  A            D  ++  V  +G++IA++I  +
Sbjct: 500 GLGIRHVGAKVSKQLLESFGTIKELASA----------DVQAIAAVDGLGEVIAKSIQRY 549

Query: 616 YQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +        ++ L            +    + +  K +V TG L+ ++R +A+  +  LG
Sbjct: 550 FAKEEAQVLLKELESYGVNLSYLGQKVTDDAILSGKTVVLTGKLEHLKRSEAKAKLEALG 609

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           A V+  +S+KTD+++ G + GSKLEKAQ LG+++ +E   L L
Sbjct: 610 AKVTGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 652


>gi|291557760|emb|CBL34877.1| DNA ligase, NAD-dependent [Eubacterium siraeum V10Sc8a]
          Length = 660

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 231/710 (32%), Positives = 368/710 (51%), Gaps = 51/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  EQ + E   L +E+  H+  YY    P I D EYD L RR   I    P++      
Sbjct: 1   MDKEQIKSEYEQLCREVEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIV---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P   +GG    +  KVTH +   SL+ +++  +L +F  R+ +   K       + +E
Sbjct: 58  SSPTQHVGGYAINTFEKVTHEVQMGSLQDVFSKGELYEFDERVKKAVGKAV-----YCVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++ Y+ G F   + RGDG  GED++  ++ I +IP  L+  IP  IEVRGEV
Sbjct: 113 PKIDGLSVSLEYKDGIFTRGSTRGDGFVGEDITKNLKTIKSIPMELNEKIP-FIEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K DF  L  + +    +P  NPRNAA+G LR+ +     +R L+ FV  L +     
Sbjct: 172 YMPKADFEKLVRKQLENDEQPAKNPRNAAAGSLRQKDSRVTASRGLDIFVFNLQRIEGRE 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  M+ LGF V +G +  +     VS   E+   R +  YDIDG V KVD F 
Sbjct: 232 LTCHSESLDYMKSLGFNVIDGYKTFDNIEDAVSRIMEIGENRQSYSYDIDGAVIKVDNFE 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L+ +LG  A+ P+W ++ K+  ++  T+LLDI+I +GRTG LTPVA  EPV + G  ++ 
Sbjct: 292 LRNELGSTAKVPKWAVAFKYPPEEKETKLLDIEINVGRTGALTPVAVFEPVWLAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A LHN+DYI             +DIR+GD + V++AG++IP+VV  + +    +++PF  
Sbjct: 352 AVLHNQDYIDS-----------KDIRIGDIIAVRKAGDIIPEVVRSVSHA--ENSEPFII 398

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C  +  R  +       A  RC   + C AQ L+ ++HF SR A NI+GLG+  
Sbjct: 399 PHICPVCHGKAERAEDE------AVIRCVN-IDCPAQLLKNIEHFASRPAMNIDGLGEAV 451

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +    ++      I   AD+++LQ++        E + GF  VS + L  +I   +  S 
Sbjct: 452 VKQLVENR----LISTVADLYSLQQQDL------EMLPGFAKVSASKLIANIENSKANSP 501

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +R +F+LGI+ +G + A+ L K++ S +  ++ +             +  V   GDI+A 
Sbjct: 502 DRLLFALGIKGIGQKNAQLLMKHFGSIEKLSETLP----------EEISAVENFGDILAN 551

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I      P     +E L      ++ + +     ++     V TGTL  + R +A+  +
Sbjct: 552 NIFTALHEPHMTELIERLKSYGVNTVYQSDVKSD-KLAGLTFVITGTLPDMTRDEAKTLI 610

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            Q G   S  +SRKT  ++ G+  GSKL KAQQLGV +++++Q + ++ +
Sbjct: 611 EQNGGKCSGSVSRKTSYVLAGEEAGSKLTKAQQLGVTVISQQQLIEMIGE 660


>gi|29346304|ref|NP_809807.1| DNA ligase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568276|ref|ZP_04845687.1| DNA ligase [Bacteroides sp. 1_1_6]
 gi|81445157|sp|Q8A9C1|DNLJ_BACTN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|29338199|gb|AAO76001.1| DNA ligase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842349|gb|EES70429.1| DNA ligase [Bacteroides sp. 1_1_6]
          Length = 666

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 225/709 (31%), Positives = 354/709 (49%), Gaps = 51/709 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+     D N P 
Sbjct: 2   DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLELAHPEYK---DENSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N +  +V H  P LSL   ++  ++  F  R+ +      +       E K D
Sbjct: 59  MRVGSDINKNFTQVAHKYPMLSLANTYSEGEVTDFYERVRKAL----NEDFEICCEMKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           GT I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ + 
Sbjct: 115 GTSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPSSFEIRGEILMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
              F  LN E  A     +ANPRNAASG L+  N + +                +   G 
Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGDNLPCDGH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK 
Sbjct: 235 YENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKN 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+ V + G ++  A+LH
Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDAVQLSGTVVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-HPDAQPFSFPSF 433
           N D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F + 
Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFITN 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S+++R          AAH C    AC  Q   +++HF+SR A NI+GLG + +D 
Sbjct: 404 CPECGSKLIRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDM 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F++       I   AD++ L+            +   G+ S  N+   I + + +  ER 
Sbjct: 458 FYR----LGLIHNTADLYELKADDIKG------LDRMGEKSAENIITGIEQSKTVPFERV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG  +A+ +AK +       Q           D   LI +  +G+ IA++I+
Sbjct: 508 IFALGIRFVGETVAKKIAKSFGDIDELRQA----------DLEKLISIDEIGEKIARSIL 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYV 670
            ++ N  N   V  L KE    + R E+++S    ++  + +V +G      R + ++ +
Sbjct: 558 LYFSNESNRELVGRL-KEAGLQLYRTEEDMSGYTDKLAGQSIVISGVFTHHSRDEYKDLI 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            + G      +S KT  I+ GDN G +KLEKA++LGV I++E++FL L+
Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGVTILSEDEFLKLI 665


>gi|322373465|ref|ZP_08048001.1| DNA ligase, NAD-dependent [Streptococcus sp. C150]
 gi|321278507|gb|EFX55576.1| DNA ligase, NAD-dependent [Streptococcus sp. C150]
          Length = 652

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 216/701 (30%), Positives = 359/701 (51%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K +  L  +++ +   YY    P + D+EYD L R   A+    P+L ++   + P ++
Sbjct: 2   EKRMKELVAKLNQYAKEYYTEDNPSVSDAEYDKLYRELVALEAEHPELVQA---DSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHEYPLYSLQDAFSREELDTFDKRVK-----DEFPNADYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP  L L+ P  I VRGE Y+ + +
Sbjct: 114 SISLTYVNGILQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAE 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N +    G   +ANPRNAA+G LR+L+   +            + S      Q ++
Sbjct: 172 FERINTQRQENGEAEFANPRNAAAGTLRQLDTKVV-AKRRLATFLYQEASPTERLTQNDV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN      ++   I  +   +   R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LNEVTELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDYLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    LL +D Q+GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAELLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++ ++R     P   P+ CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQE-PMEVPTQCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC    +C AQ  E L HF SRDA NI G+G   ++  F++
Sbjct: 399 GSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNIAGMGPSVVEKLFQA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           E     ++  ADI+ L  +          + GF + S   LY +I   +  S E+ ++ L
Sbjct: 452 E----LVKDVADIYGLNSQDF------LQLEGFKEKSAEKLYAAIQTSKENSAEKLLYGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA++++ L + + + ++ A            D  ++  V  +G++IA++I  ++ 
Sbjct: 502 GIRHVGAKVSKQLLEAFETIKDLASA----------DVEAIAAVDGLGEVIAKSIQRYFV 551

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  ++ L           +K   +  +  K +V TG L+ ++R +A+  +  LGA 
Sbjct: 552 KEEVKVLLKELESYGINMAYLGQKVADNAILSGKTVVLTGKLEHLKRSEAKAKLEALGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++ G + GSKLEKAQ LG+ +++E   L L
Sbjct: 612 VTGSVSKKTDLVVAGSDAGSKLEKAQSLGIDVVDEAWLLNL 652


>gi|210621776|ref|ZP_03292805.1| hypothetical protein CLOHIR_00750 [Clostridium hiranonis DSM 13275]
 gi|210154540|gb|EEA85546.1| hypothetical protein CLOHIR_00750 [Clostridium hiranonis DSM 13275]
          Length = 678

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 223/710 (31%), Positives = 370/710 (52%), Gaps = 51/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E  + ++ +L  +I+YH D YY    P I D EYD L +    +    P+  R    
Sbjct: 1   MGKEDIKLQIDNLIDKINYHSDKYYNQDTPEISDFEYDMLMKELIKLEAENPEFKRV--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P N++GG       +VTH  P LSL   ++ EDLR F  R+        D  + + +E
Sbjct: 58  DSPSNRVGGMALDKFDQVTHKNPMLSLSNAYSAEDLRDFDRRVREM----TDGDVEYVVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + I YE G+F  AA RG+G  GED+S  +  I +IP  +       I VRGEV
Sbjct: 114 FKIDGLSVGITYENGEFKSAATRGNGIIGEDISKNVMTIKSIPLKIDDKRE--IIVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVHGLGKTSEI 249
           YISK +F  +N+       + +ANPRN A+G LR+L+     +     F  +        
Sbjct: 172 YISKENFEKVNEYQEEHDLQIFANPRNLAAGSLRQLDSKLTAKRPLDIFVFNLENINELD 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 + L+ ++ LGF V+   +   +   ++ +       R +L +DIDG+V KV+  
Sbjct: 232 GIDTHSDSLEYLKKLGFSVSENYKICKSIDEVIEFIEYWTENRGSLKFDIDGMVVKVNNI 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             + ++G  A+SPRW I++KF  ++  +++LDI++++GRTG +TP A LEPV + G  ++
Sbjct: 292 EQRNEMGFTAKSPRWAIAYKFPAERKKSKILDIEVEVGRTGTITPTAILEPVRLAGTSVS 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNED+I+            +DI++ D V+V++AG++IP++V+++  +R  D + F 
Sbjct: 352 RATLHNEDFIR-----------EKDIKLFDHVIVQKAGDIIPQIVEVVKEDRTGDEKDFV 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            PS CP C    VR          AA +C   ++C AQ    + HFVSR+A +I+G+G+ 
Sbjct: 401 MPSVCPECGEPTVRLEGE------AAVKCIN-ISCPAQIRRGMIHFVSREAMDIDGMGES 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +  F K       I+  +DI+ L++ Q         +   G+ S  NL  +I K ++  
Sbjct: 454 IITLFLKE----GLIKDVSDIYYLKKEQIV------PLERMGEKSADNLIKAIEKSKSND 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R I  LGIR VG + A+ LA  + S                 D   L ++   G I++
Sbjct: 504 LWRLINGLGIRFVGVKGAKILASNFSSLDEIINA----------DVERLQQLEEFGSIMS 553

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQ 667
           +++V+F++  +N+  ++ L      +    +K+  +    E  K+V TGTL  ++R++A+
Sbjct: 554 ESVVKFFREEQNLAVIQKLKDAGVNTEAGEDKSEGIPQLFEGMKIVLTGTLPTLKRNQAK 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           E +   G   ++ +S+ T  ++ G+  GSKL KA  LG+K+++E+ FL L
Sbjct: 614 EIIELRGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEDMFLKL 663


>gi|289432483|ref|YP_003462356.1| DNA ligase, NAD-dependent [Dehalococcoides sp. GT]
 gi|288946203|gb|ADC73900.1| DNA ligase, NAD-dependent [Dehalococcoides sp. GT]
          Length = 680

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 242/714 (33%), Positives = 374/714 (52%), Gaps = 57/714 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+ +L +EI+ H+  YY    P I D++YD L  R   +  A P+L     P+ P  K+G
Sbjct: 10  EVENLRREINRHNQLYYVQDNPEISDAQYDTLISRLKELEEAHPELV---TPDSPTQKVG 66

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            E   +   V H  P LSL   ++  +L  +  R+ +      +       EPK+DG  +
Sbjct: 67  AEPLKAFGIVNHPYPLLSLANAFSDTELEAWYQRVKKLLG---NIPFQIDCEPKMDGLAV 123

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + Y  GKF   A RGDG  GE+++  +R I +IP     N P + EVRGEVY+SKN F 
Sbjct: 124 ALTYRDGKFATGATRGDGFQGENITRNLRTIHSIPLNAEPNAPPVFEVRGEVYLSKNGFA 183

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYEM 257
            LN E    G  P+ANPRNAA+G LR+L+P+    R L+ F++ LG + + +     +++
Sbjct: 184 KLNRERADKGLPPFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYSEDSLLPDSHWQI 243

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L     +GF +N   R  NT      YY +M + R++LPYD DG+V+KVD  SLQ +LG+
Sbjct: 244 LDYFSKIGFRINPLNRLVNTLEEAKEYYRQMAANRASLPYDADGVVFKVDSVSLQHRLGD 303

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             R PRW I++KF  +Q  TRL  I I +GRTG L P A LEPVN+GG ++  A LHNED
Sbjct: 304 VGREPRWAIAYKFPAEQVMTRLKKIGISVGRTGTLNPFAVLEPVNVGGVVVKQAALHNED 363

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF---- 433
            I             +DIR GD V+++RAGEVIP+VV  ++++R+P+++PF         
Sbjct: 364 DI-----------LRKDIREGDTVIIQRAGEVIPEVVAPVLSKRNPESKPFRMEESLFNP 412

Query: 434 ------CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                 CP+C   + R           A      ++C AQ   +L+HFVSR A +I G+G
Sbjct: 413 NLNRPACPVCGGEIYRPAGE-------AMHYCANVSCPAQFERQLEHFVSRGAMDIRGIG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       +       ++  +D++ L      +T  +  +   G+ S  N+ D+I   + 
Sbjct: 466 ESLSVILAQQ----GLVKNVSDLYYL------TTADLLQLPRMGEKSADNIIDAIADSKT 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L+R IF LG+RHVG E A  L+++Y +    A+               L  +P +GD 
Sbjct: 516 RPLDRVIFGLGVRHVGNETATLLSRHYGNIWALAKTGLG----------ELQTIPDIGDK 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           IA +IV ++   +N+  +  L +     +  +   N +      + V TG L+   R +A
Sbjct: 566 IASSIVAYFSEEKNVAVIRRLEEAGVRLTSDQKPVNKNMPFSGMEFVVTGKLESFSREEA 625

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           QE +  LG      +++ T  ++VG + GSKL KA+ +GVK ++E +F+ +L+Q
Sbjct: 626 QEKIRSLGGTAKDNVTKATSYLVVGADAGSKLAKARSMGVKELSEREFINMLEQ 679


>gi|329954852|ref|ZP_08295869.1| DNA ligase [Bacteroides clarus YIT 12056]
 gi|328526956|gb|EGF53967.1| DNA ligase [Bacteroides clarus YIT 12056]
          Length = 665

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 222/707 (31%), Positives = 356/707 (50%), Gaps = 50/707 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L  ++  H+  YY  + P I D E+D   R    +    P+    +D N P  
Sbjct: 3   IKEKIDQLRADLHRHNYNYYVLNTPEISDKEFDDRMRELQELEKEHPEY---QDENSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +      +       E K DG
Sbjct: 60  RVGSDLNKNFTQVAHKYPMLSLGNTYSENEVTDFYDRVKKAL----NEDFEICCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE GK V A  RGDG  G+DV+  ++ I TIP +L  N P + E+RGE+ +   
Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLILHGNYPALFEIRGEILMPWE 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F  LN E  A     +ANPRNAASG L+  N   +               E+   G YE
Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGEELPCDGHYE 235

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ     GF ++   ++A++   +  Y     + R  LP   DG+V KV+    QK LG
Sbjct: 236 NLQAAAGWGFKISEHTKKAHSLEEVFEYIRYWDTERKNLPVATDGIVLKVNSMRQQKNLG 295

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN 
Sbjct: 296 FTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHNA 355

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435
           D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F + CP
Sbjct: 356 DIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARGMLIGEKVKFITHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S+++R          AAH C    +C  Q   +++HF+SR A NI+GLG + +D F+
Sbjct: 405 ECGSKLIRYEGE------AAHYCPNETSCPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I+  AD++ L      +      +   G+ S  N+   I   + +  ER +F
Sbjct: 459 R----LGLIKNTADLYQLTTDDIKN------LDRMGEKSAENIIKGIEASKEVPFERVLF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ +AK +                   +   LI +  +G+ IAQ+I+ +
Sbjct: 509 ALGIRFVGETVAKKIAKSFNDIDELENA----------NLEKLINIDEIGEKIAQSILAY 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           + NP N   VE L K     + R E+++S    ++  + +V +G      R + +E + +
Sbjct: 559 FANPLNRELVERL-KSTGLQLYRREEDLSGYTDKLAGQSIVISGVFAHHSRDEYKELIEK 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G      +S KT  I+ G+N G +KLEKA +LG++IM+E++FL L+
Sbjct: 618 NGGKNVGSISAKTSFILAGENMGPAKLEKAHKLGIRIMSEDEFLALI 664


>gi|22298400|ref|NP_681647.1| NAD-dependent DNA ligase LigA [Thermosynechococcus elongatus BP-1]
 gi|81743454|sp|Q8DKK2|DNLJ_THEEB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|22294579|dbj|BAC08409.1| DNA ligase [Thermosynechococcus elongatus BP-1]
          Length = 689

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 236/725 (32%), Positives = 360/725 (49%), Gaps = 62/725 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E   + +  L + +      YY   +PI+ D  YD L R    +  A+P+      P+ 
Sbjct: 4   KEPPAERIQQLRRLLQRASYAYYALDQPIMEDEVYDQLYRELQELEAAYPEYI---TPDS 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW----QKKDDNSIFFT 129
           P  +IG         V+H IP  SLE  +   D+  +  R  R+W    Q++      + 
Sbjct: 61  PTQRIGEAPVSQFESVSHRIPLYSLENAFTFADMVAWQERWQRYWRTLRQEEPLPPAEYV 120

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVR 188
            E K+DG  + + YE G  V  A RGDG  GEDV++ +R I  IP  L+  N P ++EVR
Sbjct: 121 CELKMDGVALALTYENGLLVRGATRGDGQRGEDVTSNVRTIRPIPLRLALDNPPPVVEVR 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL---- 243
           GE ++    F  LN E  A G  P+ANPRNAA+G LR+L+P     R L+FF + L    
Sbjct: 181 GEAFLPLERFHQLNQERQAQGEPPFANPRNAAAGTLRQLDPRIVAQRQLDFFAYALHLPE 240

Query: 244 ------GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
                 G+      + Q ++L  ++ LGF VN           + +YY+  ++ R  LPY
Sbjct: 241 GGSVPLGENQAGEPQSQRQVLYALQHLGFRVNPHHADCPDLEAVKAYYDRWQTARHQLPY 300

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
             DG+V K+++  LQ+ LG   + PR  I+ K+  +QA T +L I +Q+GRTG LTPVA 
Sbjct: 301 LTDGIVVKLNDLKLQQTLGFTQKFPRGSIAWKYEPEQAITDVLAITVQVGRTGALTPVAE 360

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           L PV + G  ++ ATLHN DYI  L           D+ +GD+V++ +AGE+IP++V + 
Sbjct: 361 LAPVQLAGTTVSRATLHNADYIAEL-----------DLHIGDKVVIHKAGEIIPEIVRVF 409

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
              R P A+PF+ P+ CP C   VVR  N       A  RC     C A    +++H+ S
Sbjct: 410 PELRPPTARPFTMPTACPECHQPVVRPANE------AVSRCGNPR-CPAIVRGQIRHWAS 462

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           RDA +I+GLG++ +      E     +R PAD++ L   Q  S      +   G  S   
Sbjct: 463 RDALDIQGLGEKLVQQLVTKE----LVRTPADLYRLTAAQLLS------LERMGQKSADK 512

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L  +I   +     R ++ LGIRHVG+  A+ LA  + S +  A                
Sbjct: 513 LLVAIANSKQQPWPRVLYGLGIRHVGSVNAQLLADRFKSVEELATAT----------VAD 562

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP-----SIGRHEKNVSSEIENKKL 652
           L  V  +G+ IAQA+ E++Q+P +   +  L              +        +  K+ 
Sbjct: 563 LCGVDGIGEEIAQAVQEWFQDPDHQSLIADLQALGLQLAAALHPAQKALTTEKSLNGKRF 622

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL  + R +A+  + + G  VS  +SR+TD ++VG+  GSKL +AQ+LG+  +NE 
Sbjct: 623 VITGTLPTLTREQAKALIQKHGGHVSESVSRQTDYLVVGEKAGSKLRRAQELGIPCINET 682

Query: 713 QFLFL 717
           + + +
Sbjct: 683 ELIQM 687


>gi|256847801|ref|ZP_05553246.1| DNA ligase, NAD-dependent [Lactobacillus coleohominis 101-4-CHN]
 gi|256715490|gb|EEU30466.1| DNA ligase, NAD-dependent [Lactobacillus coleohominis 101-4-CHN]
          Length = 674

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 236/716 (32%), Positives = 391/716 (54%), Gaps = 48/716 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E +++ +A+KE+  L Q++      YY+   P + D  YD   +R   +   FP+L    
Sbjct: 4   EQITLAEAKKEIGPLRQQLIQWGKEYYEQDNPSVEDYVYDRQYQRLVELEARFPELV--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GG+ +  L KVTH IP LS+  ++++E+L  F  R        D   I + 
Sbjct: 61  TPDSPTQRVGGQTDTQLAKVTHDIPMLSMGDVFSVEELHAFNERQQSNL--LDTAPIEYD 118

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           LE KIDG  +++ YE G+ + A+ RG+G  GED++A    I  IP  L   +   +E RG
Sbjct: 119 LELKIDGLSLSLVYENGRLIQASTRGNGVIGEDITANAMTIKDIPHQLPEPLS--LEFRG 176

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           E Y+ K  F+ LN E  A G+  +ANPRNAA+G LR+L+P     R L  F++ + +  +
Sbjct: 177 ECYMPKESFVKLNAEREANGQPVFANPRNAAAGSLRQLDPQVTARRNLATFMYYVPEYEK 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +    Q E LQ+MR LGF VN   +  ++   +  Y  E  + R  L Y IDG+V KV++
Sbjct: 237 LGVTTQEEALQRMRDLGFNVNPHNQTVHSEKELAEYIGEYTAQRDQLAYGIDGIVEKVND 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ +LG   + PRW I++KF  ++ +T + +I   +GRTG +TP A ++PV + G  +
Sbjct: 297 LHLQTKLGNTVKVPRWEIAYKFPPEEQATVVREIVWTVGRTGNVTPTAVMDPVQLAGTTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN DY++            +DIR+GD VL+ +AG++IP++  +I+ +R  +++ +
Sbjct: 357 SRASLHNPDYLR-----------EKDIRLGDTVLLHKAGDIIPEISRVIIEKRPVNSEEY 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP+C+S++V            A RC   + C AQ  E L HF SR+A NI+GLG 
Sbjct: 406 QIPTQCPVCESKLVHLDGE------VALRCVNPM-CPAQIKEGLAHFASRNAMNIDGLGP 458

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++  +  +     +R  AD++ L   Q  +      +  FG+ S TNL  SI+  R+ 
Sbjct: 459 KIIEQLWDKK----LVRDFADLYRLNEEQLLT------LDKFGEKSATNLLTSIDNSRHN 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+ER +F LGIRHVGA++AR +A+ + S     +               +  V  +G  I
Sbjct: 509 SVERLLFGLGIRHVGAKVARLIAEKFGSLDAVMKA----------SAEDIAAVDTIGPTI 558

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKA 666
             ++  ++ N +    ++ L               ++SSE   +++V TG L    R +A
Sbjct: 559 GDSVATYFANTQVHQLIQELKDVQVNMEYTAASHVDLSSEWNGQRVVLTGKLAMFTRGEA 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +E++ + GA V+  +S+KT+++I G+  GSKL+KAQ LG+ I +E++F   +++ N
Sbjct: 619 KEWLEEHGAQVTGSVSKKTNLLIAGEKAGSKLQKAQGLGIPIWDEQRFSQAMKEDN 674


>gi|312984361|ref|ZP_07791702.1| DNA ligase, NAD-dependent [Lactobacillus crispatus CTV-05]
 gi|310894255|gb|EFQ43336.1| DNA ligase, NAD-dependent [Lactobacillus crispatus CTV-05]
          Length = 666

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 207/712 (29%), Positives = 361/712 (50%), Gaps = 51/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++++A+KE +SL ++++   + YY    P + D+ YD    R   +   FP++     P
Sbjct: 2   LTLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV---TP 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++GG+++    KV H IP LS+  +++  +L+ F  R+ +       + + + +E
Sbjct: 59  DSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRMQKLVG----HPVEYNVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ YE GK V A+ RG+G+ GEDV+A  + I  IP+ L   +    EVRGE 
Sbjct: 115 LKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPEPL--TTEVRGEC 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           Y+ K  F  LN E    G   +ANPRNAA+G LR+L+P    +                 
Sbjct: 173 YMGKEAFAKLNAEREEQGLVVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEEI 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q++ +QKM  LGF  N   R+  T   + ++ +E  + R++L Y IDG+V K+D+  +
Sbjct: 233 TSQHQAIQKMHDLGFHTNETGRKLKTLDEVFAFIDEYTAKRNSLTYGIDGIVLKIDDLGI 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  +  A
Sbjct: 293 EQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVARA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN DY+             + +R+GD V + +AG++IP++ ++++ +R  D+  +  P
Sbjct: 353 SLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVMAKRPADSVAYQIP 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG + +
Sbjct: 402 TTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPKIV 454

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                 +     +   AD++ L             +  F + S+ NL  +++  +  S+E
Sbjct: 455 KQLIAKD----LVHNVADLYHLTADDL------AQLDHFKEKSINNLLTALDNSKQNSVE 504

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             I  LGI HVGA+ AR +A+ + +                 D   +  +  +G  IA++
Sbjct: 505 LLITGLGIDHVGAKAARLIAQKFKNLAKIMSL----------DVQEIASIDTIGMTIAES 554

Query: 612 IVEFYQNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +  ++  P     ++ L +              +   +  ++K +V TG L+   R +  
Sbjct: 555 MTTYFAQPEAQKVIDELRESGLNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTRSEFT 614

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +  LGA V+  +S KTD +I G + GSK  KAQ LGV ++ EE+ +  ++
Sbjct: 615 KKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAIAQIE 666


>gi|291530728|emb|CBK96313.1| DNA ligase, NAD-dependent [Eubacterium siraeum 70/3]
          Length = 660

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 230/710 (32%), Positives = 367/710 (51%), Gaps = 51/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  EQ + E   L ++   H+  YY    P I D EYD L RR   I    P++      
Sbjct: 1   MDKEQIKSEYEQLCKQAEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIV---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P   +GG    +  KVTH +   SL+ +++  +L +F  R+ +   K       + +E
Sbjct: 58  SSPTQHVGGYAINTFEKVTHEVQMGSLQDVFSKGELYEFDERVKKAVGKAV-----YCVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++ Y+ G F   + RGDG  GED++  ++ I +IP VL   IP  IEVRGEV
Sbjct: 113 PKIDGLSVSLEYKDGIFTRGSTRGDGFVGEDITKNLKTIKSIPMVLREKIP-FIEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K DF  L  + +    +P  NPRNAA+G LR+ +     +R L+ FV  L +     
Sbjct: 172 YMPKADFEKLVRKQLENDEQPAKNPRNAAAGSLRQKDSRVTASRGLDIFVFNLQRIEGRE 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  M+ LGF V +G +  +     VS   E+   R +  YDIDG V KVD+F 
Sbjct: 232 LTCHSESLDYMKSLGFNVIDGYKTFDNIEDAVSRIMEIGENRQSYSYDIDGAVIKVDDFE 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L+ +LG  A+ P+W ++ K+  ++  T+LLDI+I +GRTG LTPVA  EPV + G  ++ 
Sbjct: 292 LRNELGSTAKVPKWAVAFKYPPEEKETKLLDIEINVGRTGALTPVAVFEPVWLAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A LHN+DYI             +DIR+GD + V++AG++IP+VV  + +    +++PF  
Sbjct: 352 AVLHNQDYIDS-----------KDIRIGDIIAVRKAGDIIPEVVRSVSHA--ENSEPFVI 398

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C  +  R  +       A  RC   + C AQ L+ ++HF SR A NI+GLG+  
Sbjct: 399 PHICPVCHGKAERAEDE------AVIRCVN-IDCPAQLLKNIEHFASRPAMNIDGLGEAV 451

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +    ++      I   AD+++LQ++        E + GF  VS + L  +I   +  S 
Sbjct: 452 VKQLVENR----LISTVADLYSLQQQDL------EMLPGFAKVSASKLIANIENSKTNSP 501

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +R +F+LGI+ +G + A+ L K + S +  ++  +            +  V   GDI+A 
Sbjct: 502 DRLLFALGIKGIGQKNAQLLMKNFGSIEKLSETSS----------EEISAVENFGDILAN 551

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I      P     +E L      ++ + +     ++     V TGTL  + R +A+  +
Sbjct: 552 NIFTALHEPHMTELIERLKSYGVNTVYQSDVKSD-KLAGLTFVITGTLPDMTRDEAKTLI 610

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            Q G   S  +S+KT  ++ G+  GSKL KAQQLGV +++++Q + ++ +
Sbjct: 611 EQNGGKCSGSVSKKTSYVLAGEEAGSKLTKAQQLGVTVISQQQLIEMIGE 660


>gi|325681379|ref|ZP_08160905.1| DNA ligase (NAD+) [Ruminococcus albus 8]
 gi|324106869|gb|EGC01159.1| DNA ligase (NAD+) [Ruminococcus albus 8]
          Length = 665

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 215/712 (30%), Positives = 365/712 (51%), Gaps = 52/712 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           IE    + A+K +  L   ++YH   YY   +  I D +YD ++     +   +P+  R 
Sbjct: 5   IEMADKDNAKKRIDELVATLNYHAHLYYVEDRNEISDYDYDMMQNELKKLEAQYPEFIR- 63

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ P  ++GG+      KV H +   SL+ +++ E +R+F+ R+         +   F
Sbjct: 64  --PDSPTQRVGGKAVSRFEKVQHKVQMGSLQDVFSFEGVREFVDRVRETV-----DDPKF 116

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +EPKIDG  +++ Y  G+    + RGDG  GE+V+  +R + +IP     +   ++EVR
Sbjct: 117 VVEPKIDGLSVSLEYHDGQLTVGSTRGDGFVGENVTENLRTVRSIPV-SIDSTLPMLEVR 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247
           GEVY+ ++ FL L  E      +P+ NPRNAA+G LR+ NP     R L+ FV  + +  
Sbjct: 176 GEVYMPRSVFLKLVKEQEDNDEQPFKNPRNAAAGSLRQKNPKIAAKRKLDIFVFNVQQVE 235

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   + L  ++ LGF      R  +T   I++   E+   R  LPYDIDG+V KVD
Sbjct: 236 GKELTAHKQSLDYLKELGFKTVPDYRLVSTADEIIARIGEIGESRFELPYDIDGVVIKVD 295

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +FS ++++G  A+ P+W +++KF  ++ +T+LLDI++ +GRTG +TPVA  EPV + G  
Sbjct: 296 DFSQRERIGSTAKDPKWAVAYKFPPEEKNTKLLDIELNVGRTGAVTPVAIFEPVFLAGTQ 355

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN+D           +   ++I +GD + V++AG++IP+V+ ++          
Sbjct: 356 VSRATLHNQD-----------LINEKNINIGDIIKVRKAGDIIPEVLGVVEKNSDG---A 401

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F+ P  CP+C+++++R          AA RC     C AQ    + HF S+ A NI+GLG
Sbjct: 402 FTLPDECPVCKTKLIRSEEE------AAVRCPNV-ECPAQIFRSIVHFASKGAMNIDGLG 454

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            Q +            I   AD++ +         K+  +  F + S  NL  +I K ++
Sbjct: 455 PQIVRVLLDK----GLITSVADLYHITEE------KLLELDNFKEKSAHNLVTAIEKSKS 504

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL+R IF LGIR +G   A+ L   +    +  +               +  +   GDI
Sbjct: 505 NSLDRLIFGLGIRGIGQASAKLLCAKFGGIDSIMRATAA----------EIAEIEGFGDI 554

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A ++   +     +  ++ L      +     +      E K  V TGTL  ++R++A+
Sbjct: 555 MADSVYSAFHEEHMLSLIQRLKDCGVNTDYEKVQ-QDDRFEGKTFVLTGTLPTLKRNEAK 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E + + G   S  +S+KTD ++ G+  GSKL KA+QLG+KI+ EE+F+ +++
Sbjct: 614 ELIEKFGGKASGSVSKKTDYVLAGEEAGSKLTKAEQLGIKIITEEEFMEMIK 665


>gi|199597353|ref|ZP_03210784.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus HN001]
 gi|199591869|gb|EDY99944.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus HN001]
          Length = 674

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 244/716 (34%), Positives = 372/716 (51%), Gaps = 51/716 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A  E++ L ++++     YY    P + D+ YD   R   A+  AFP L  
Sbjct: 5   PAAQFTLEEAEAEVAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFPKLV- 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+         +++ 
Sbjct: 64  --TPDSPTQQVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARMQANVG----HAVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE G+ V  + RGDG+ GEDV+  +  I ++P   +L  P  +EV
Sbjct: 118 YNVELKIDGLALSLIYENGRLVQGSTRGDGNIGEDVTKNVLTIASVP--KTLKRPLSLEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE Y+ K  F  LN    A G  P+ANPRNAA+G LR+LNP     R L+ F++ L   
Sbjct: 176 RGECYMPKAAFAKLNARKEADGDTPFANPRNAAAGSLRQLNPKITAGRELDTFIYTLIDA 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K Q+E +  M+ LGF  N     A+    I +Y  +  S R  LPY IDG+V KV
Sbjct: 236 DRFNVKTQHEAIAFMQDLGFTTNPSSEVASDMQAIDAYITKYTSDRDALPYGIDGIVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G 
Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAKTVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V ER  +  
Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVKERPANTP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   P  CP C  ++V   +        A RC   + C AQ  E+L HF SR+A NI+GL
Sbjct: 405 PAPIPEKCPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +      +     +   AD++ L           E +  F + S+ NL ++IN  R
Sbjct: 458 GPKIIAQLQAKK----LVTDVADLYRLTATDL------EKLDKFKEKSINNLLNAINNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+ER IF LGIRHVG + AR LA+++ S                 D   +  +P +G 
Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGSLDELMAA----------DQDQVAAIPNIGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            IA+A+V +++       VE L         +         S +  K +V TG   +  R
Sbjct: 558 TIAEAVVTYFKTDTVKKLVEQLRSAGVNLRYTGPTRPAVSDSFVSGKTVVITGKFAEFSR 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  + + QLGA V+  +S+KTD++I GD  GSKL KAQ L V IM+E   L  L+
Sbjct: 618 PELTKRLEQLGAKVTGSVSKKTDLVIAGDAAGSKLTKAQDLNVPIMDETALLTNLK 673


>gi|55821530|ref|YP_139972.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus LMG
           18311]
 gi|55823458|ref|YP_141899.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus CNRZ1066]
 gi|81559086|sp|Q5LYL9|DNLJ_STRT1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81560280|sp|Q5M382|DNLJ_STRT2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|55737515|gb|AAV61157.1| DNA ligase [Streptococcus thermophilus LMG 18311]
 gi|55739443|gb|AAV63084.1| DNA ligase [Streptococcus thermophilus CNRZ1066]
          Length = 652

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 214/701 (30%), Positives = 355/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K +  L  +++ +   YY    P + D+EYD L R    +    P+L ++   + P ++
Sbjct: 2   EKRMKELVDKLNQYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQA---DSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRVK-----SEFPNADYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP  L L+ P  I VRGE Y+ + +
Sbjct: 114 SISLTYVDGILQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAE 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N +    G   +ANPRNAA+G LR+L+   +             +       Q ++
Sbjct: 172 FERINTQRQENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFFYQEASPTERLT-QNDV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN      ++   I  +   +   R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LNEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDHLAYDIDGVVIKVNSLAIQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++   +LL +D Q+GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAKLLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++ ++R         PS CP C
Sbjct: 351 YI-----------TEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQE-AMPVPSQCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC    +C AQ  E L HF SRDA NI G+G   ++  FK+
Sbjct: 399 GSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNISGMGPSVVEKLFKA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           E     ++  ADI+ L  +          + GF + S   LY +I   +  S E+ ++ L
Sbjct: 452 E----LVKEVADIYGLNSQDF------LQLEGFKEKSAEKLYAAIQASKENSAEKLLYGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA++++ L + + + +  A            D  ++  V  +G++IA++I  ++ 
Sbjct: 502 GIRHVGAKVSKQLLESFGTIKELASA----------DVQAIAAVDGLGEVIAKSIQRYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  ++ L            +    + +  K +V TG L+ ++R +A+  +  LGA 
Sbjct: 552 KEEAQVLLKELESYGVNLSYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAKLEALGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++ G + GSKLEKAQ LG+++ +E   L L
Sbjct: 612 VTGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 652


>gi|258648381|ref|ZP_05735850.1| DNA ligase, NAD-dependent [Prevotella tannerae ATCC 51259]
 gi|260851551|gb|EEX71420.1| DNA ligase, NAD-dependent [Prevotella tannerae ATCC 51259]
          Length = 677

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 218/711 (30%), Positives = 353/711 (49%), Gaps = 47/711 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L +E+  H+  YY  + P ILD+++DAL +    +    P+ A   D N P  +
Sbjct: 8   KDRIDFLRKELHRHNYNYYVKNNPEILDADFDALMQELADLEQKHPEWA---DNNSPTVR 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G +++    +V H  P LSL   ++  ++++F  RI    +    ++     E K DG 
Sbjct: 65  VGSDLSNDFVQVRHQYPMLSLGNTYDKAEIKEFYDRITGDLK---GSAFEICCELKFDGL 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--IPEIIEVRGEVYISK 195
            I++ YE G+ + A  RGDG  G+DV+  I+ I +IP  L      P   EVRGEV +  
Sbjct: 122 SISLLYEDGRLIRAVTRGDGSVGDDVTENIKTIKSIPLQLQEGLGWPRRFEVRGEVLMPW 181

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
             F  LN E    G   +ANPRNAASG L+  N   +               +I  K  Y
Sbjct: 182 ASFEKLNTERETNGEPLFANPRNAASGTLKSKNSAVVASRRLDAYLYYVLGEDIPKKSHY 241

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L  ++  GF V+  +  + +   I +Y +   + R  LP   DG+V KVD  + Q+QL
Sbjct: 242 ENLLMIKKWGFKVSENIHLSKSLDNIYAYIDHWDTERRYLPVATDGIVLKVDNLNQQQQL 301

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A T LLD+  Q+GRTG +TPVA ++PV + G  +  A+LHN
Sbjct: 302 GSTAKSPRWAIAYKFKAERARTHLLDVIYQVGRTGAVTPVAVMDPVLLAGTTVKRASLHN 361

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFC 434
           ED I+ L           D+   D V V++AGE+IP++V +  + R+        F + C
Sbjct: 362 EDIIQQL-----------DLHYNDFVFVEKAGEIIPQIVGVDKDARNESLGDKVHFITQC 410

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + ++R  N       AA  C     C  Q   R++HF+SRDA +I  LG + +D +
Sbjct: 411 PECGTHLIRFPNE------AATYCPNDATCPPQIKGRIEHFISRDAMDINSLGPETIDNY 464

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I   AD++ L+      +            S   + + I K ++   +R +
Sbjct: 465 YER----GLIHDIADLYKLRIEDLAGS------DATRLKSARKIIEGIEKSKSTPFDRVL 514

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIR VG  +A++LA Y+ S                     L++V  VG  IA+ + +
Sbjct: 515 YALGIRFVGKVVAKTLAAYFHSMDALQAAT----------LEELLQVEGVGQTIAENVRQ 564

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           ++ +P N+  ++ L            + VS+ +  K +V +GT  +  R + +  + + G
Sbjct: 565 WFMSPTNLQILDRLTVAGLQMTADVSRQVSNRLAGKSIVISGTFTRHSREEYKAIIEENG 624

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
                 +S+KTD I+ GDN G SK  KA+ LG+ ++ EE FL +L + +TT
Sbjct: 625 GKNVGSISKKTDFILAGDNMGPSKRTKAEALGIPLLQEEAFLAMLDEESTT 675


>gi|295692390|ref|YP_003601000.1| DNA ligase [Lactobacillus crispatus ST1]
 gi|295030496|emb|CBL49975.1| DNA ligase [Lactobacillus crispatus ST1]
          Length = 668

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 207/715 (28%), Positives = 362/715 (50%), Gaps = 51/715 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +++++A+KE +SL ++++   + YY    P + D+ YD    R   +   FP++   
Sbjct: 1   MAEITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GG+++    KV H IP LS+  +++  +L+ F  R+ +       + + +
Sbjct: 59  -TPDSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRMQKLVG----HPVEY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ YE GK V A+ RG+G+ GEDV+A  + I  IP+ L   +    EVR
Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPEPL--TTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+SK  F  LN E    G   +ANPRNAA+G LR+L+P    +              
Sbjct: 172 GECYMSKEAFAKLNAEREEQGLAVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ +QKM  LGF  N   R+      + ++ +E  + R++L Y IDG+V K+D+
Sbjct: 232 EEITSQHQAIQKMHDLGFHTNETGRKLKILDEVFAFIDEYTAKRNSLTYGIDGIVLKIDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             ++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  +
Sbjct: 292 LGIEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN DY+             + IR+GD V + +AG++IP++ ++++ +R  D+  +
Sbjct: 352 ARASLHNPDYL-----------NEKGIRIGDTVKLHKAGDIIPEISEVVMAKRPADSVAY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG 
Sbjct: 401 QIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +      +     +   AD++ L             +  F + S+ NL  +++  +  
Sbjct: 454 KIVKQLIAKD----LVHNVADLYHLTADDL------AQLDHFKEKSINNLLTALDNSKQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  I  LGI HVGA+ AR +A+ + +                 D   +  +  +G  I
Sbjct: 504 SVELLITGLGIDHVGAKAARLIAQKFKNLAKIMSL----------DVQEIASIDTIGMTI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           A+++  ++  P     ++ L +              +   +  ++K +V TG L+   R 
Sbjct: 554 AESMTTYFAQPEAQKVIDELRESALNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTRS 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  + +  LGA V+  +S KTD +I G + GSK  KAQ LGV ++ EE+ +  ++
Sbjct: 614 EFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAIAQIE 668


>gi|227542668|ref|ZP_03972717.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227181551|gb|EEI62523.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 679

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 208/708 (29%), Positives = 343/708 (48%), Gaps = 50/708 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
                L  ++ YH D YY    P I D+E+D L  +   +    P L     P+ P  ++
Sbjct: 7   ARWEELAAQVRYHRDKYYN-GTPEITDAEFDVLFSQLQQLEAEHPGL---RAPDSPTLEV 62

Query: 79  GGEMNLS--LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           G           + H     SL+ +++ ++L +++ R           S  +++E KIDG
Sbjct: 63  GAPSPEGSSFENIAHLERMYSLDNVFSKDELEQWLIRT---------PSDTYSVELKIDG 113

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEVY 192
             I + Y  G+   AA RGDG  GE+++A  R I  IP  L       IP ++EVRGEVY
Sbjct: 114 VSIDLVYRDGELATAATRGDGTVGEEITANARMITGIPDHLQENDAFPIPSVLEVRGEVY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFA 251
           I+ +DF  +N++     +KP+ANPRNAA+G +R+ +      R L    HG+G    I  
Sbjct: 174 IAIDDFPLVNEQRQLENKKPFANPRNAAAGSMRQKDPQAVKKRKLTLVCHGIGAAEGISF 233

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           + Q E  + +   G PV+      ++   +     +    R    +++DG+V KVD    
Sbjct: 234 ESQTEAYKALAAFGLPVSEYTTVVHSHEEVHEMVEKWADHRHDAVFEMDGMVVKVDNREQ 293

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  +R+PRW I++K+  ++A T+L+D+ + +GRTG +TP A +EPV + G+ +  A
Sbjct: 294 QRALGATSRAPRWAIAYKYPPEEAVTKLIDVRVGVGRTGRVTPFAIMEPVEVAGSTVEMA 353

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+  +             + + +GD+V++++AGEVIP+V+  + + R    +PF FP
Sbjct: 354 TLHNQSEVNR-----------KGVLIGDQVVIRKAGEVIPEVLGPVADLRDGTERPFVFP 402

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C +++         +  A  RC    +C  Q   RL++   R  F+IE LG++  
Sbjct: 403 TLCPQCGTKLA-----PAKEEDADWRCPNTRSCPGQLAGRLEYIAGRGVFDIEALGEKAA 457

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
               ++      +   AD+FTL       +    N  G  + +   L   +  ++   L 
Sbjct: 458 ADLVRT----GILTDEADLFTLTEDDLLDSRVYTNSKGAVNAAGKKLIAGLKTQKETDLW 513

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R I  L IRHVG   AR+LA+ + S     +               L     VG +IA +
Sbjct: 514 RVITGLSIRHVGPTAARALAREFGSMDAIRKATE----------EELAATEGVGGVIAAS 563

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           IV+++    +   V+A  +          +     +E   +V TG+L+   R   +E + 
Sbjct: 564 IVDWFSVDWHRAIVDAWAEAGVTMEDERGEAKEQTLEGLTIVVTGSLENYTRDGVKEAII 623

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + G   S  +S+KTD ++VG N GSK  KA++LG  I+NE+QF  LL 
Sbjct: 624 ERGGKASGSVSKKTDYVVVGANAGSKAAKAEELGRPIINEQQFEELLA 671


>gi|89054995|ref|YP_510446.1| DNA ligase, NAD-dependent [Jannaschia sp. CCS1]
 gi|123401112|sp|Q28PE1|DNLJ_JANSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|88864544|gb|ABD55421.1| DNA ligase NAD-dependent [Jannaschia sp. CCS1]
          Length = 752

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 285/750 (38%), Positives = 433/750 (57%), Gaps = 56/750 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S + A+  L+ L + +S  +  Y+    P + D++YDALKR   AI  AFPDL R+   +
Sbjct: 16  SADAAKTRLAELAKRLSDANTAYHAADAPDLSDADYDALKRENAAIEAAFPDLKRA---D 72

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P +++G        K+TH+   LSL   ++  D+  F+  I R+     +  + FT EP
Sbjct: 73  SPSDQVGAAPAEGFSKLTHTQRMLSLANAFDAGDVPDFVAGIRRYLNLGAEADLPFTAEP 132

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  +++RYE G+ V AA RGDG  GE+V+A  R I  IP+ L+   P+++EVRGEVY
Sbjct: 133 KIDGLSLSLRYEDGQLVSAATRGDGAIGENVTANARTIDDIPQTLTDA-PDVLEVRGEVY 191

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           +S  DF ALND     G K +ANPRNAA+G LR+L+ +   +R L FF +  G+ S   A
Sbjct: 192 MSHADFAALNDRQAEAGAKTFANPRNAAAGSLRQLDASITRSRPLRFFAYAWGEVSAPLA 251

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q   L  ++ LGF +N+  +  ++   ++++Y  ++  R+ L YDIDG+VYK+D+   
Sbjct: 252 ATQSGALNTLKTLGFQINDRTKTCHSAEDMLAHYASIEQDRADLGYDIDGVVYKIDDLDY 311

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL PV +GG +++NA
Sbjct: 312 QRRLGMRSTTPRWAIAHKFPAELAWTTLEAIDIQVGRTGALSPVARLTPVTVGGVVVSNA 371

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNEDYI G DA+G  +R G+DIRVGDRV V RAG+VIPKV D+ + +R  +   ++FP
Sbjct: 372 TLHNEDYIAGRDANGGPIRDGKDIRVGDRVQVYRAGDVIPKVADVDLAKRPENTAKYAFP 431

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP CQS  +R+         A  RCTGGL C AQ +E+LKHFVSR AF+I+GLG +Q+
Sbjct: 432 DHCPQCQSEAIREEG------DAVRRCTGGLICPAQAVEKLKHFVSRAAFDIDGLGAKQV 485

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F+        I  PADIF L+        ++ N  G+G+ S T+L+++I+ +R+I+L 
Sbjct: 486 EAFYLD----GWIAEPADIFRLKENYGEGMKQLRNREGWGEKSATSLFNAIDDKRSIALH 541

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN------------------- 592
           R IF+LGIRHVG   A  LA+++ +++  A+ ++                          
Sbjct: 542 RLIFALGIRHVGEVAASDLARHFTTWKALAEIVDQAAPAAEAHRRAEDAVLAERKAAADE 601

Query: 593 ----------------------DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
                                   W  L  +  +G  +A ++V  +Q  R   +++ L+ 
Sbjct: 602 GRRASLQPQRDKAWADTPEPAKAAWDDLTGIDGIGATVAVSLVTTFQQARERASIDRLIT 661

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
           E++       +   S +    +VFTG L+++ R +A+     +GA VS  +S KTDI++ 
Sbjct: 662 ELTDIQPPEARATQSAVAGLTVVFTGALERMTRAEAKARAEAMGAKVSGSVSAKTDIVVA 721

Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G   GSK +KA+ LG++++ EEQ+L  +  
Sbjct: 722 GPGAGSKEKKAKDLGIELLTEEQWLDRIGD 751


>gi|295394422|ref|ZP_06804646.1| NAD-dependent DNA ligase LigA [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972774|gb|EFG48625.1| NAD-dependent DNA ligase LigA [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 740

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 224/755 (29%), Positives = 359/755 (47%), Gaps = 76/755 (10%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
               L   + +K  + L  +I  H + YY +  P I D E+D L    + +  A+P+LAR
Sbjct: 13  DPAELEPAERQKLAAELAAQIEEHREAYYVHDAPKISDKEFDELVHALEDLESAYPELAR 72

Query: 68  SEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               + P  K+GG  +      V H     SLE ++++E+L ++  R+ +          
Sbjct: 73  D---DSPTQKVGGYADTEAFAPVQHVARMYSLEDVFSVEELDQWFERVAKSVP----AGT 125

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEII 185
            F  E KIDG    + YE G+ V AA RGDG++GED++A +R I  IP  L+  N P  +
Sbjct: 126 PFLSEVKIDGLACNLLYENGQLVRAATRGDGYTGEDITANVRTIDDIPTTLNATNPPARV 185

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL- 243
           E+RGEV+   + F  LN  ++  G+ P+ANPRNAA+G LR+ +P+    R L+  VHG+ 
Sbjct: 186 EIRGEVFFPSDKFADLNASLVEQGKPPFANPRNAAAGSLRQKDPSITAQRPLHMLVHGIA 245

Query: 244 ----GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
               G         Q ++   +R  G P++   R   T   + +Y  E    R  L ++I
Sbjct: 246 AWQSGDAGAQEPTQQSQVYDLLRDWGMPISPYYRVCTTQDDVHAYITEFGERRHELLHEI 305

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KVD  +LQ++LG  +R+PRW  ++K+  ++ +T+LLDI +Q+GRTG +TP A +E
Sbjct: 306 DGIVVKVDNIALQEELGYTSRAPRWACAYKYPPEEVTTKLLDIRVQVGRTGRVTPFAVME 365

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G+ ++ ATLHN   +K            + + +GD V++++AG+VIP+V+  +  
Sbjct: 366 PVLVAGSTVSRATLHNAHEVKR-----------KGVLIGDDVVIRKAGDVIPEVLGPVTA 414

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R    + F  P+ CP C + +      +  +     RC     C AQ   RL +  SR 
Sbjct: 415 NRDGSERAFVMPTHCPDCGAELY-----EQKEGDKDLRCPNSETCPAQVANRLAYLASRA 469

Query: 480 AFNIEGLGKQQLDFFFKS------EDPAFSIRIPAD------------------------ 509
           A +IE LG++      +       +  A    +  D                        
Sbjct: 470 ALDIELLGEEASLALTQPLGEPPLKSEAGLFDLTVDDLGEVEIEREVKKNGVPTGEIERV 529

Query: 510 -IFTLQRRQQTSTTKIENI--LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
             F  +     S  K   +        +   + D I K +   L R + +L IRHVG   
Sbjct: 530 KYFFTKEELYASGEKKGQVKKPSQPRANTLAMLDEIEKAKGQPLWRVLVALSIRHVGPTA 589

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           AR +A ++ S                     L+ V  VG+ IAQ++V+++    +   V+
Sbjct: 590 ARDIAAHFRSMDAVRNAT----------VEDLLEVEGVGETIAQSVVDWFAEEWHAHIVD 639

Query: 627 ALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
           +  K          +  +    +E   +V TG+L    R   +E +   G   S+ +S+K
Sbjct: 640 SWAKAGVRMADEPAEESTQPQTLEGLTIVATGSLDNFTRDGIKESIVGAGGKASSSVSKK 699

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           TD ++ G+N GSKL KAQ LGV ++NEEQF  LL 
Sbjct: 700 TDYVVAGENAGSKLTKAQDLGVPVLNEEQFQQLLA 734


>gi|255324552|ref|ZP_05365669.1| DNA ligase, NAD-dependent [Corynebacterium tuberculostearicum
           SK141]
 gi|255298458|gb|EET77758.1| DNA ligase, NAD-dependent [Corynebacterium tuberculostearicum
           SK141]
          Length = 689

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 203/717 (28%), Positives = 349/717 (48%), Gaps = 53/717 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
              +E + L QE+  H + YY   +P I D+++DAL +R  A+    P+LA    P+ P 
Sbjct: 9   DLHREWNDLAQEVRRHRNLYYN-GEPAIPDADFDALFQRLLALEEEHPELAV---PDSPT 64

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G   ++    + H    +SL+ +++  +++ ++ R           +  +  E KID
Sbjct: 65  QQVGAAPSVG-EDIEHLERMMSLDNVFSAGEMQDWLDRT---------PAKTYLTELKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEV 191
           G  I + Y  G+   AA RGDG  GE+++A  R I  IP  L+      +PE+IE+RGEV
Sbjct: 115 GLSIDLVYRNGRLTTAATRGDGTVGEEITANARVIEDIPHELTGTAEYPVPELIEIRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+   DF  +N+E  A G+  +ANPRNAA+G LR  +  +   R L    HGLG      
Sbjct: 175 YMRPEDFEEINEERAADGKDKFANPRNAAAGGLRMKDSAEVKKRRLKMVCHGLGAREGFS 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q++  + +   G PV+   +Q ++   +          R    +++DGLV KVD+ +
Sbjct: 235 PTSQHDAYKAIAAWGLPVSPYTKQVHSAKEVQDEVAHWAEHRHDAIFEMDGLVVKVDDLA 294

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  +R+PRW I++K+  ++ +T+L +I++ +GRTG +TP A +EPV + G+ +  
Sbjct: 295 SQRALGATSRAPRWAIAYKYPPEEVTTKLKNIEVGVGRTGRVTPYAVMEPVFVSGSTVEM 354

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+  +K            + + +GD V++++AGE+IP+V+  +  +R      ++F
Sbjct: 355 ATLHNQSEVKR-----------KGVLIGDTVIIRKAGEIIPEVLGPVREQRDGSEHEWTF 403

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C +++            A  RC    +C AQ   RL++  SR A +IE LG++ 
Sbjct: 404 PENCPACGTKLA-----PQKDGDADWRCPNTQSCPAQLSARLEYLASRKALDIEALGEKG 458

Query: 491 LDFFFKSE--------DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
                 +             + ++ A      ++        +      + +  NL +++
Sbjct: 459 AMDLIDNGILVDESELFELTAKKLLASDVYTAKKDTKDKRSKKEGNVKVNTAGQNLLNNL 518

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + +     R + SL IRHVG   AR+LA  Y S                     L  V 
Sbjct: 519 EEVKGRDFWRVLVSLSIRHVGPIAARALASRYGSMDKLRAA----------KTEELAEVD 568

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            VG  IAQ+  ++++   +   V+             E++    +E   +V TG+L+   
Sbjct: 569 GVGMTIAQSFHDWFEVDWHRTIVDKWAAAGVAMEVAAEEHKEQTLEGLTIVVTGSLENFT 628

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R  A+E +   G   +  +S+KT  ++ G N GSK +KA++L + I+NE QF  LL+
Sbjct: 629 RDSAKEAIVSRGGKATGSVSKKTSYLVAGANAGSKEDKARELDIPILNESQFQQLLE 685


>gi|313207091|ref|YP_004046268.1| DNA ligase, naD-dependent [Riemerella anatipestifer DSM 15868]
 gi|312446407|gb|ADQ82762.1| DNA ligase, NAD-dependent [Riemerella anatipestifer DSM 15868]
 gi|315022511|gb|EFT35538.1| DNA ligase [Riemerella anatipestifer RA-YM]
          Length = 669

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 217/711 (30%), Positives = 353/711 (49%), Gaps = 46/711 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S++  + ++  L +E+  H+  YY    P I D E+D +      +  A+P+ A   D 
Sbjct: 1   MSLDDIKHKIEELREELHQHNYNYYVLDTPSISDYEFDMMLEELKELELAYPEFA---DN 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG +  +   V H     SL+  +N EDL  +  R+ +     D   I +  E
Sbjct: 58  NSPTQRVGGNITKNFPTVEHRHRMYSLDNSYNFEDLSDWQNRLIKSL---DTTDIEYVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I+I YE G F  A  RGDG  G++++A ++ I  IP  +    P    +RGE+
Sbjct: 115 LKYDGASISILYENGAFKQAITRGDGFQGDEITANVKTISDIPLKIKGEYPNTFYIRGEI 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           Y++K  F  +N      G   + NPRN ASG L+  + T++ +     V       +   
Sbjct: 175 YLTKKHFNLINKAREKEGLDLFMNPRNTASGSLKMQDSTEVRKRKLSAVLYQVVAEDTPV 234

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K  +E+L++ +  GF  +   +       +  + +     R  L ++IDG+V KV+  + 
Sbjct: 235 KTHWELLEQTKDWGFKTSQQAKLCKNLDEVKDFIDYWDKERQHLDFEIDGIVIKVNNLNQ 294

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  A+SPRW ++HKF  ++  T+L  I  Q+GRTG +TPVA L+PV + G ++  A
Sbjct: 295 QQLLGYTAKSPRWAMAHKFKAEKVETQLESISYQVGRTGTITPVANLKPVLLAGTIVKRA 354

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHNED I+ L           ++   D V V++ GE+IPK+V +   +R P+A   ++ 
Sbjct: 355 SLHNEDIIRKL-----------NLHTQDFVYVEKGGEIIPKIVGVNKEKRLPNATLVAYI 403

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP C   +VR+         AAH C     C  Q + ++ H+VSR A NIE LG + +
Sbjct: 404 SHCPECHMPLVRNEGE------AAHFCPNETHCPPQVIGKMIHYVSRKALNIENLGSETI 457

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F+       I   AD +TL + Q      +  +    + S  N+ D I K + I  E
Sbjct: 458 EQLFRE----GLISNIADFYTLTKEQ------LLPLDRMAEKSAQNILDGIEKSKQIPFE 507

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +F LGI+HVG  +A+ L K + +     +               L  V  VG  IA++
Sbjct: 508 KVLFGLGIKHVGETVAKKLVKNFHTIDGLKKAT----------LEELTEVEDVGIKIAES 557

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +V ++QN  NI  ++ L                VS+ +E K  +FTG L    R +A+E 
Sbjct: 558 LVNYFQNEENIEILDRLKSYGIQLEQEENTSAKVSNALEGKTFLFTGKLSLFTREQAEEM 617

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719
           V + G    + +S+  + ++VG+  GSKL+KAQ L  V I++E++FL L+ 
Sbjct: 618 VEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQTLSTVTILDEQEFLDLIN 668


>gi|11095423|gb|AAG29863.1|AF313764_6 DNA ligase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|49284|emb|CAA77966.1| DNA ligase [Zymomonas mobilis subsp. mobilis CP4]
 gi|382210|prf||1819268B DNA ligase
          Length = 731

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 294/733 (40%), Positives = 440/733 (60%), Gaps = 51/733 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +  + LS EQA  EL  L + IS++D  Y+    P + DSEYDAL  R   I   FPDL 
Sbjct: 21  LAPKNLSREQAVIELERLAKLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLI 80

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R   P+ P  K+G   N  L K+ H    LSL+  +  +D+  F+ R+ RF+  K++ ++
Sbjct: 81  R---PDSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVEDFLGRVRRFFNLKENQAV 137

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEII 185
             T+EPKIDG   ++RYEKG    A  RGDG  GEDV+  +R I  IP+ L   N PEII
Sbjct: 138 ICTVEPKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRVIDDIPKTLKGDNWPEII 197

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           E+RGEVY++K+DF ALN       +K +ANPRNAA+G LR+L+P     R L F  HG G
Sbjct: 198 EIRGEVYMAKSDFTALNARQTEENKKLFANPRNAAAGSLRQLDPNITARRSLRFLAHGWG 257

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + + + A  QY M++ +   G  V+N + +A+    ++ +Y ++++ R+ L +DIDG+VY
Sbjct: 258 EATSLPADTQYGMMKMIESYGLSVSNLLARADDIGQMLDFYQKIEAERADLDFDIDGVVY 317

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+D+   Q++ G  AR+PR+ ++HKF  ++A T LLDI+IQ+GRTG+LTPVA+LEPV +G
Sbjct: 318 KLDQLDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVGRTGVLTPVAKLEPVTVG 377

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++++ATLHN D I+ L            +R GDRVLV+RAG+VIP++V+ +  +   D
Sbjct: 378 GVVVSSATLHNSDEIERL-----------GVRPGDRVLVQRAGDVIPQIVENLTPDV--D 424

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              + FP  CP+C S   R+          A RCTGGL C AQ++E L HFVSR AF I+
Sbjct: 425 RPIWHFPHRCPVCDSVARREEGE------VAWRCTGGLICPAQRVEALCHFVSRTAFEID 478

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLGK  ++ FF  +     I  PADIF L +++Q    +     G+G++SV NL  +I+K
Sbjct: 479 GLGKSHIESFFADK----LIETPADIFRLFQKRQLLIER----EGWGELSVDNLISAIDK 530

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN-------IIAHNNDDWL- 596
           RR +  +RF+F+LGIRHVGA  AR LAK Y ++ NF   I+        +   + +    
Sbjct: 531 RRKVPFDRFLFALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQPSSEESEEK 590

Query: 597 -------SLIR---VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
                   LI    +P +G  I +++++F+    N   V  LL+EV       E   SS 
Sbjct: 591 YQKRVDKELISFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLYFE-LASSP 649

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K +VFTG+LQKI R +A+     LGA V++ +S+KT++++ G+  GSKL KA++L +
Sbjct: 650 LSGKIIVFTGSLQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKELDI 709

Query: 707 KIMNEEQFLFLLQ 719
            I++E+++  +++
Sbjct: 710 SIIDEDRWHRIVE 722


>gi|148240764|ref|YP_001226151.1| NAD-dependent DNA ligase LigA [Synechococcus sp. WH 7803]
 gi|166216252|sp|A5GPI9|DNLJ_SYNPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147849303|emb|CAK24854.1| NAD-dependent DNA ligase [Synechococcus sp. WH 7803]
          Length = 698

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 223/735 (30%), Positives = 358/735 (48%), Gaps = 57/735 (7%)

Query: 12  LSIEQ-ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           +SI Q  ++  + L Q ++     YY    P + DS YD L R    +  A P+L  +  
Sbjct: 1   MSIPQGLQERAAELRQLLNRAAHAYYVLDAPDLEDSVYDRLYRELLDLEAAHPELVEA-- 58

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NS 125
            + P  ++GG        VTH IP  SL+  ++ E+LR + TR+ +   ++        +
Sbjct: 59  -DSPTQRVGGSPAEGFRSVTHRIPLFSLDNAFSAEELRGWYTRLLKVLDREPPSGSPLPA 117

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEI 184
           +    E KIDG  + + Y+ G  V AA RGDG  GED++A +R I +IP  L     P  
Sbjct: 118 LAMVGELKIDGNALALSYDNGVLVRAATRGDGDQGEDITANVRTIASIPLRLHLDPPPAW 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL 243
           +EVRGE  I  N F A+N E  A     +ANPRNA +G LR+L+P     R L+FF + L
Sbjct: 178 VEVRGEALIPDNTFAAINSERAARDEPLFANPRNACAGTLRQLDPKVVAARRLDFFAYTL 237

Query: 244 GKTSEI---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
               +        Q+E L+ +   GF VN           +  ++ +  S R  L Y  D
Sbjct: 238 HLPEDWSGERPTSQWESLRWLEDAGFRVNPNAALLPDVDSVEQFFGDWDSRRHDLNYATD 297

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K+++  LQ   G   ++PRW I+ K+  ++A +RLL +  Q+GRTG++TPVA  EP
Sbjct: 298 GVVVKLNDLRLQDAAGFTQKAPRWAIALKYPAEEAPSRLLKLTCQVGRTGVVTPVAEFEP 357

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V++ G  ++ ATLHN D ++ L           D+  GD ++V++AGE+IP+V+ ++   
Sbjct: 358 VSLAGTSVSRATLHNADRLQEL-----------DLHSGDTIIVRKAGEIIPEVLRVLPEL 406

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R   A P   P  CP C S +VR+         AA RC    +C A     L+H+VS+ A
Sbjct: 407 RPEGALPLELPQQCPSCGSDLVRESGE------AATRCVNS-SCPAILSGALRHWVSKGA 459

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +++GLG + ++   +       +R  AD++ L     TS      +   G+ S  NL  
Sbjct: 460 LDVDGLGSKLIEQLVER----GLVRSIADLYRLDTALLTS------LERMGEKSAGNLVA 509

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           ++ + R     R ++ LGI HVG   A++LA  +    + A               ++  
Sbjct: 510 ALAQSRTQPWSRQLYGLGIHHVGEVNAKALASAFADAHSLADAAVQRP-------EAITD 562

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--------NVSSEIENKKL 652
           +  +G  IAQ++ +++    N   ++ L           ++        N    +  +  
Sbjct: 563 LHGIGPEIAQSLQQWFNTSANQDLLQQLRAVGLTLAASDQERQALADRNNGKGHLNGQTF 622

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL  + R +AQ  +   G  VS  +S+KT  ++ GD  GSKL+KA  LGV +++E 
Sbjct: 623 VLTGTLPSLSRSQAQALIEGAGGKVSGSVSKKTSFVVAGDEAGSKLDKANTLGVSVLDEA 682

Query: 713 QFLFLLQQYNTTLRI 727
             + L+Q    T+ +
Sbjct: 683 ALMLLIQNSADTIHL 697


>gi|56551260|ref|YP_162099.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ZM4]
 gi|59802648|sp|P28719|DNLJ_ZYMMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56542834|gb|AAV88988.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 731

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 296/733 (40%), Positives = 441/733 (60%), Gaps = 51/733 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +  + LS EQA  EL  L + IS++D  Y+    P + DSEYDAL  R   I   FPDL 
Sbjct: 21  LAPKDLSREQAVIELERLAKLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLI 80

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R   P+ P  K+G   N  L K+ H    LSL+  +  +D+  F+ R+ RF+  K++ ++
Sbjct: 81  R---PDSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVEDFLGRVRRFFNLKENQAV 137

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEII 185
             T+EPKIDG   ++RYEKG    A  RGDG  GEDV+  +R I  IP+ L   N PEII
Sbjct: 138 ICTVEPKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRVIDDIPKTLKGDNWPEII 197

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           E+RGEVY++K+DF ALN       +K +ANPRNAA+G LR+L+P     R L F  HG G
Sbjct: 198 EIRGEVYMAKSDFAALNARQTEENKKLFANPRNAAAGSLRQLDPNITARRSLRFLAHGWG 257

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + + + A  QY M++ +   G  V+N + +A+    ++ +Y ++++ R+ L +DIDG+VY
Sbjct: 258 EATSLPADTQYGMMKVIESYGLSVSNLLARADDIGQMLDFYQKIEAERADLDFDIDGVVY 317

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+D+   Q++ G  AR+PR+ ++HKF  ++A T LLDI+IQ+GRTG+LTPVA+LEPV +G
Sbjct: 318 KLDQLDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVGRTGVLTPVAKLEPVTVG 377

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++++ATLHN D I+ L            +R GDRVLV+RAG+VIP++V+ +  +   D
Sbjct: 378 GVVVSSATLHNSDEIERL-----------GVRPGDRVLVQRAGDVIPQIVENLTPDV--D 424

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              + FP  CP+C S   R+          A RCTGGL C AQ++ERL HFVSR AF IE
Sbjct: 425 RPIWRFPHRCPVCDSVARREEGE------VAWRCTGGLICPAQRVERLCHFVSRTAFEIE 478

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLGK  ++ FF  +     I  PADIF L +++Q    +     G+G++SV NL  +I+K
Sbjct: 479 GLGKSHIESFFADK----LIETPADIFRLFQKRQLLIER----EGWGELSVDNLISAIDK 530

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN-------IIAHNNDDWL- 596
           RR +  +RF+F+LGIRHVGA  AR LAK Y ++ NF   I+        +   + +    
Sbjct: 531 RRKVPFDRFLFALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQPSSEESEEK 590

Query: 597 -------SLIR---VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
                   LI    +P +G  I +++++F+    N   V  LL+EV       E   SS 
Sbjct: 591 YQKRVDKELISFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLYFE-LASSP 649

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K +VFTG+LQKI R +A+     LGA V++ +S+KT++++ G+  GSKL KA++L +
Sbjct: 650 LSGKIIVFTGSLQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKELDI 709

Query: 707 KIMNEEQFLFLLQ 719
            I++E+++  +++
Sbjct: 710 SIIDEDRWHRIVE 722


>gi|227892258|ref|ZP_04010063.1| NAD-dependent DNA ligase [Lactobacillus salivarius ATCC 11741]
 gi|227865899|gb|EEJ73320.1| NAD-dependent DNA ligase [Lactobacillus salivarius ATCC 11741]
          Length = 672

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 241/719 (33%), Positives = 394/719 (54%), Gaps = 55/719 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S +    EL  L  +++   + YY    P + DS YD   +R   +  A PDL  +   
Sbjct: 1   MSQKDIEMELKELRDKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     KV H IP LSL  +++ E+L +F+ R+    ++K    + ++ E
Sbjct: 58  DSPSQRVGGKVLSGFTKVNHDIPMLSLGDVFSKEELIEFLERLENSVEQK----LDYSCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE GKF+  + RG+G  GED++  ++ I  IP  L+  +   IEVRGE 
Sbjct: 114 LKIDGLAISLTYENGKFIKGSTRGNGVIGEDITENLKTIKAIPMELNEPVS--IEVRGEC 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN +  A G+  +ANPRNAA+G LR+L+     +R L+ F++ L +  ++ 
Sbjct: 172 YMPKKSFVELNTKREAEGQAVFANPRNAAAGSLRQLDTKITASRNLSTFIYYLMEPEKLG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q E L K+   GF VNN  +Q  T   I +Y +E    R+ LPYDIDG+V KV+ F+
Sbjct: 232 IKTQTEALNKLESWGFKVNNESKQVKTKEEIFAYIDEATDQRANLPYDIDGIVLKVESFA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q Q+G   + PRW I++KF   +  T++LDI+  +GRTG++TP A +EPV + G  +  
Sbjct: 292 VQSQVGNTVKVPRWAIAYKFPPDEQETKVLDIEWTVGRTGVVTPTAVMEPVTLAGTTVAR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DY++            +DIR+GD V + +AG++IP++ ++++ +R  D+  +  
Sbjct: 352 ASLHNPDYLR-----------EKDIRIGDTVKLHKAGDIIPEISEVVLAKRTEDSVEYQI 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + +V   +        A RC     C A   E L HF SR+A +I GLG + 
Sbjct: 401 PTECPECGANLVHLDDE------VALRCINPQ-CPALVKESLTHFASRNAMDIRGLGPRI 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  +  E     I+  A I++L   Q  +      +  F + S  NL  +IN  RN S+
Sbjct: 454 IEQLYNRE----MIKDVAGIYSLTFEQLIT------LDKFKEKSANNLLTAINNSRNNSI 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA++AR LA+ Y S  N A+               +  +  +G II  
Sbjct: 504 ERLIFGLGIRHVGAKVARILAENYKSMDNLAKA----------KSDEISTIDSLGKIIGD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI-------GRHEKNVSSEIENKKLVFTGTLQKIQR 663
           ++  ++ +   +  ++ L +              + E +  S     ++V TGTL  ++R
Sbjct: 554 SVEMYFADEHVMELLDELRQAGVNLEFLGKTREEQLESSTDSSFNGLRVVLTGTLDTLKR 613

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +A+ ++   GA V+  +S+KTD++I G + GSKL KAQ+L V++MNE +F+  +++ +
Sbjct: 614 SEAKSWLEAHGAKVTGSVSKKTDLLIAGHDAGSKLTKAQELNVRVMNEAEFIQQMEEES 672


>gi|33866919|ref|NP_898478.1| NAD-dependent DNA ligase LigA [Synechococcus sp. WH 8102]
 gi|81573701|sp|Q7U3P1|DNLJ_SYNPX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33639520|emb|CAE08904.1| Putative DNA ligase [Synechococcus sp. WH 8102]
          Length = 679

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 220/718 (30%), Positives = 356/718 (49%), Gaps = 54/718 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + + ++  + L   ++     YY    P++ D+ YD L R    +  A P L      + 
Sbjct: 1   MAEQQQRAAELRSLLNRAAHAYYVLDAPVMEDTLYDRLYRELQQLEQADPSLL---SADS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G         V H IP  SL+  ++  +L+ +  R+ +   + DD+ +    E K
Sbjct: 58  PTQRVGKAPATGFHSVEHRIPLQSLDNAFDHGELKAWHERLLKVLDRADDSPLPLVGELK 117

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVY 192
           IDG  + + Y  G    AA RGDG SGE+++A +R I +IP      + PE +EVRGE +
Sbjct: 118 IDGNALALSYRHGVLERAATRGDGSSGEEITANVRTISSIPLRLQIDDPPEWVEVRGEAF 177

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--SEI 249
           I  + F A+N+E  A G   +ANPRNA +G LR+L+P     R L+FF + L        
Sbjct: 178 IPDDTFAAINNERAAHGDALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPSDHSN 237

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             + Q+++L  +   GF VN      +  +GI  + +  +  R  L Y  DG+V K+++ 
Sbjct: 238 SPECQWDVLAWLEQAGFRVNPNRELCDGLNGIERFCDRWEQQRHQLTYATDGVVVKLNDL 297

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ + G   ++PRW I+ K+  ++A ++LL + +Q+GRTG +TPVA  EPV + G  ++
Sbjct: 298 RLQDEAGTTQKAPRWAIALKYPAEEAPSKLLKLAVQVGRTGAVTPVAEFEPVALAGTSVS 357

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN D I  L           D+ +GD V+V++AGE+IP+VV ++   R   A P  
Sbjct: 358 RATLHNADRIAEL-----------DLHLGDTVVVRKAGEIIPEVVRVLPELRPTGAVPLE 406

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C S +VRD +       AA RC    +C A     L+H+VS+ A +++GLG +
Sbjct: 407 LPDHCPECGSNLVRDDSE------AATRCINS-SCPAILRGGLRHWVSKGALDVDGLGNK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +    +       +R  AD++ L      S      +   G+ S  NL  ++ + +   
Sbjct: 460 LIQQLVER----GLVRSIADLYRLDAALLAS------LERVGEKSAANLVAALEQSKQQP 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             R ++ LGIRH+G   A++LA  Y +  + A            +  S+  +  +G  I+
Sbjct: 510 WHRQLYGLGIRHIGEVNAKALAAAYPNSASLAAA----------EPESIAALHGIGPEIS 559

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEK---------NVSSEIENKKLVFTGTLQK 660
            ++ +++ NP N   +E L            +         N S  +  K LV TGTL  
Sbjct: 560 SSLQQWHANPPNQRLLEDLRAVGLSLEANTSELNANSTGEGNSSGALLGKTLVLTGTLPN 619

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + R  A+  +   G  VS  +S+KTD ++ G+  GSKL KA+ LGV+I+ E +   LL
Sbjct: 620 LSRSDAKTLIEGAGGKVSGSVSKKTDYLVAGEAAGSKLSKAESLGVEILTEAELQKLL 677


>gi|194335632|ref|YP_002017426.1| DNA ligase, NAD-dependent [Pelodictyon phaeoclathratiforme BU-1]
 gi|254781384|sp|B4SCX5|DNLJ_PELPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194308109|gb|ACF42809.1| DNA ligase, NAD-dependent [Pelodictyon phaeoclathratiforme BU-1]
          Length = 674

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 224/710 (31%), Positives = 363/710 (51%), Gaps = 50/710 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + ++ L +EI  H   YY  +KP + D E+D L  +   +   FP L     P+ P  
Sbjct: 7   AAEAIAQLRREIERHTHLYYVEAKPELSDFEFDQLLDQLITLERQFPQLL---TPDSPSQ 63

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG +      V H  P LSL   ++I ++ +F  R+ +    +         E K DG
Sbjct: 64  RVGGAITREFPAVQHREPMLSLSNSYSITEVEEFYNRVRKLLALEGVVEQEMVAELKFDG 123

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-------IIEVRG 189
             I++ Y+ G  V  A RGDG  G+D++A ++ + TIP  L   +          IEVRG
Sbjct: 124 VAISLIYQDGILVRGATRGDGRQGDDITANLKTVATIPLRLEETLVAALQGEERAIEVRG 183

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           EV++ K DF  LN+         +ANPRNA +G L+  +  ++ R    FV    K  + 
Sbjct: 184 EVFMRKEDFERLNESR--PDEDRFANPRNATAGSLKLQDSGEVARRSMSFVAYYLKGLKD 241

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            +      L+ +  LGF   +  R  NT   I +Y  E    R  LPY+ DG+V K+++ 
Sbjct: 242 ESTPHIHRLELLARLGFFTGDHYRLCNTLEEINTYIAEWAEKRWQLPYETDGVVLKLNDV 301

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             +++LG  A+SPRW I++K+  +QA + L ++  Q+GR G +TPVA LEPV + G+ ++
Sbjct: 302 PFREKLGATAKSPRWAIAYKYPAQQARSVLQNVLFQVGRLGTITPVAELEPVLLAGSTVS 361

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            +TLHN D I+ L            + + DRV+++++GEVIPKVV  +  ER  DA P  
Sbjct: 362 RSTLHNFDEIERL-----------GLMLRDRVIIEKSGEVIPKVVRTLFEERPADAMPIL 410

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +VR  N        ++ C     C AQ   RL HF SR+A +I+ LG  
Sbjct: 411 PPTHCPSCGAPLVRPENE------VSYSCPNEEECPAQIKGRLLHFASRNAMDIQTLGDA 464

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++           ++ P D++ LQ  Q      +E +   G  S  N+  ++ K R  S
Sbjct: 465 LVEQLVAK----GLVKDPGDLYFLQEPQ------LEKLERMGPKSAQNILRALEKSREKS 514

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ER +++LGIRHVG   AR L++   S     +               L  +P +G ++A
Sbjct: 515 YERLLYALGIRHVGRATARELSQACPSIDLLREASE----------EQLATIPDIGPVVA 564

Query: 610 QAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           ++I++++  P     +E L    +  S    ++ V+   E   ++FTG+L++  R KA E
Sbjct: 565 RSIIDYFAKPSWPHLLEKLRTAALQLSASEPKEQVNRNFEGVTVLFTGSLERYDRQKASE 624

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            V + G  V   +S+KT +++ G +PGSKL+KA +LGV++++E++F  +L
Sbjct: 625 LVLERGGRVVGSVSKKTGMVVAGQDPGSKLQKANKLGVRVVSEDEFEAML 674


>gi|116494557|ref|YP_806291.1| NAD-dependent DNA ligase [Lactobacillus casei ATCC 334]
 gi|122264017|sp|Q03AC3|DNLJ_LACC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116104707|gb|ABJ69849.1| NAD-dependent DNA ligase [Lactobacillus casei ATCC 334]
          Length = 674

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 235/717 (32%), Positives = 365/717 (50%), Gaps = 51/717 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    ++E+A+ E+  L ++++     YY    P + D+ YD   R   A+  A+P L  
Sbjct: 5   PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKLV- 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++G  +N    KV H IP LS+  +++ E+L ++  R+         + + 
Sbjct: 64  --TPDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARMQSNVG----HPVD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           + +E KIDG  +++ YE GK V  + RGDG+ GEDV+  +  I ++P+ L   +   +EV
Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPKQLKQPLS--LEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE Y+ K  F  LN      G  P+ANPRNAA+G LR+L+      R L+ F++ L + 
Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +     Q+E +  M+ LGF  N     A     I +Y  +  + R  LPY IDG+V KV
Sbjct: 236 EQFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +LQ QLG   + PRW I++KF  ++A T + DI   +GRTG++TP A ++PV + G 
Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATLHN D I+            +DIR+GD V++ +AG++IP+V  ++V +R  D  
Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPADTP 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P   P  CP C  ++V   +        A RC   + C AQ  E+L HF SR+A NI+GL
Sbjct: 405 PAPIPEVCPSCGQKLVHLDDE------VALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +            ++  AD++ L             +  F + S+ NL  +IN  R
Sbjct: 458 GPKIVAQLQAK----HLVKDVADLYHLTAADL------AKLDKFKEKSINNLLSAINNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S+ER IF LGIRHVG + AR LA+++    +                 ++  VP +G 
Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQ----------EAIADVPNIGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            I +AIV +++       +  L +       +         S +  K +V TG   +  R
Sbjct: 558 TIGEAIVTYFKAATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFAEFSR 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               + +  LGA V+  +S+KTDI+I GD  GSKL KAQ L V IMNE + L  L+ 
Sbjct: 618 PALTKQLEGLGAKVTGSVSKKTDILIAGDAAGSKLAKAQSLNVPIMNETELLANLKD 674


>gi|228476991|ref|ZP_04061629.1| DNA ligase, NAD-dependent [Streptococcus salivarius SK126]
 gi|228251010|gb|EEK10181.1| DNA ligase, NAD-dependent [Streptococcus salivarius SK126]
          Length = 652

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 217/701 (30%), Positives = 357/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K +  L  +++ +   YY    P + D+EYD L R   A+   +P+  ++   + P ++
Sbjct: 2   EKRMKELVVKLNQYAKEYYTEDNPSVSDAEYDKLYRELVALEAEYPEYVQA---DSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHEYPLYSLQDAFSREELDAFDQRVK-----AEFPNADYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP  L L+ P  I VRGE Y+ + +
Sbjct: 114 SISLTYVDGVLQVGATRGDGSIGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAE 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N +    G   +ANPRNAA+G LR+L+   +            + S      Q ++
Sbjct: 172 FERINIQRQENGEAEFANPRNAAAGTLRQLDTKVVAERR-LATFLYQEASPTERLTQNDV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN      ++   I  +   +   R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LNEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDDLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    LL +D Q+GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAELLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++ ++R     P   P+ CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQE-PMEVPTQCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC    +C AQ  E L HF SRDA NI G+G   ++  FK+
Sbjct: 399 GSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNIAGMGPSVVEKLFKA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           E     ++  ADI+ L  +          + GF + S   LY +I   +  S E+ ++ L
Sbjct: 452 E----LVKDVADIYGLNSQDF------LQLEGFKEKSAEKLYAAIQASKENSAEKLLYGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA++++ L + + S +  A            D  ++  V  +G++IA++I  ++ 
Sbjct: 502 GIRHVGAKVSKQLLEAFGSIKELASA----------DVEAIAAVDGLGEVIAKSIQRYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  ++ L            +    + +  K +V TG L+ ++R +A+  +  LGA 
Sbjct: 552 KEEAQVLLKELETYGVNLAYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAKLEALGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++ G N GSKLEKAQ LG+++ +E   L L
Sbjct: 612 VTGSVSKKTDLVVAGSNAGSKLEKAQSLGIEVKDEAWLLDL 652


>gi|7674018|sp|Q9ZFY8|DNLJ_THESK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|4235370|gb|AAD13188.1| NAD-dependent DNA ligase [Thermus sp. AK16D]
          Length = 674

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 234/712 (32%), Positives = 382/712 (53%), Gaps = 52/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E+AR+ ++ L   I YH+  YY    P I D+EYD L R    +   FP+L     P
Sbjct: 1   MTLEEARRRVNELRDLIRYHNYLYYVLDAPEISDAEYDRLLRELKELEERFPELK---SP 57

Query: 72  NGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G     +    V H     SL+  ++++++R F  RI R   +K      +T+
Sbjct: 58  DSPTEQVGARPLEATFRPVRHPTRMYSLDNAFSLDEVRAFEERIERALGRK--GPFLYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  V+ A RGDG +GE+V+  +  IPTIPR L+   P+ +EVRGE
Sbjct: 116 ERKVDGLSVNLYYEEGILVFGATRGDGETGEEVTQNLLTIPTIPRRLTGV-PDRLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+    FL LN E+   G + + NPRNAA+G LR+ +P     R L    + LG   E 
Sbjct: 175 VYMPIEAFLRLNQELEEAGERIFKNPRNAAAGSLRQKDPRVTARRGLRATFYALGLGLEE 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K Q+++L  +R  GFPV +G  +A    G+   Y      R  LP++ DG+V K+D+
Sbjct: 235 TGLKSQHDLLLWLRERGFPVEHGFTRALGAEGVEEVYQAWLKERRKLPFEADGVVVKLDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +L ++LG  AR+PR+ +++KF  ++  TRLL +  Q+GRTG +TPV  LEPV I G+ +
Sbjct: 295 LALWRELGYTARTPRFALAYKFPAEEKETRLLSVAFQVGRTGRITPVGVLEPVFIEGSEV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  TLHNE +I+ L           D+R+GD VLV +AG VIP+V+ ++   R  + +P 
Sbjct: 355 SRVTLHNESFIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKERRTGEEKPI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P  CP C   ++++           HRC   L C A++ E ++H+ SR A +I+GLG+
Sbjct: 404 IWPENCPECGHALIKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIQGLGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   +       +R  AD++ L++    +      +   G+ S  NL   I + +  
Sbjct: 455 KLIEKLLEK----GLVRDVADLYRLKKEDLVN------LERMGEKSAENLLRQIEESKGR 504

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            LER +++LG+  VG  +AR+LA  +       +               L+ V  VG++ 
Sbjct: 505 GLERLLYALGLPGVGEVLARNLALRFGHMDRLLEA----------GLEDLLEVEGVGELT 554

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+AI+   ++P     V  L +       +  +     ++    V TG L +  R + + 
Sbjct: 555 ARAILNTLKDPEFRDLVRRLKEAGVEMEAKERE--GEALKGLTFVITGELSR-PREEVKA 611

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV  ++EE+   L+++
Sbjct: 612 LLRRLGAKVTDSVSRKTSFLVVGENPGSKLEKARALGVPTLSEEELYRLIEE 663


>gi|258422981|ref|ZP_05685880.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9635]
 gi|257846768|gb|EEV70783.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9635]
          Length = 667

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 244/715 (34%), Positives = 375/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  +   +   +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L             +   G   V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +                     L+ +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      ++ L  +    I +  K        E   K +V TG L K+ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHKMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++T  GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLTSQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|222151884|ref|YP_002561044.1| DNA ligase [Macrococcus caseolyticus JCSC5402]
 gi|254781362|sp|B9E830|DNLJ_MACCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222121013|dbj|BAH18348.1| DNA ligase [Macrococcus caseolyticus JCSC5402]
          Length = 663

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 231/701 (32%), Positives = 367/701 (52%), Gaps = 53/701 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
             + ++ L Q +  ++  Y+    P + DSEYD L      I    P+L      + P  
Sbjct: 3   IEQRVTELHQLLHQYNYEYHVQDNPSVPDSEYDKLLHELIDIEREHPELKTD---DSPTV 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG    +  KV H  P LSL   ++ EDL  F  R+       +   + + +E KIDG
Sbjct: 60  RVGGTPVSAFEKVDHDTPMLSLGNAFSEEDLLAFDKRVK-----DEVGEVEYMVELKIDG 114

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             ++++Y  G FV    RGDG +GE+++  ++ I  IP  L+L++P   EVRGE Y+ + 
Sbjct: 115 LAVSLKYVDGVFVQGLTRGDGTTGENITQNLKTIHAIP--LTLSVPLTFEVRGEAYMPRK 172

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
            FLALN     VG    ANPRNAA+G LR+L+      R L+ F++ +    E+ A+ Q 
Sbjct: 173 SFLALNAYREKVGEPLAANPRNAAAGSLRQLDSKLTAKRKLDIFLYSVNDLRELNAQSQS 232

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L K+  +GF  N+  +       +  Y       R+ L YDIDG+V KV++ S Q +L
Sbjct: 233 EALDKLDEIGFKTNHERKLCRNMEEVFEYIKYWTEKRNDLAYDIDGIVIKVNDLSKQDEL 292

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SP+W I++KF  ++  T L DI++ IGRTG++TP A LEPV + G  +  A+LHN
Sbjct: 293 GFTAKSPKWAIAYKFPAEEVITTLNDIELSIGRTGVVTPTAILEPVKVAGTTVGRASLHN 352

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED I+            +DIR+GD V++++AGE+IP+VV ++++ R    +P++ P  CP
Sbjct: 353 EDLIR-----------EKDIRIGDSVVIRKAGEIIPEVVRVVLDRRPEGTKPYNMPEICP 401

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C   +VR           A RC     C A+ +E + HFVSR A NI+GLG++ ++  +
Sbjct: 402 SCGHELVRIEGE------VALRCINPK-CDAKLVEGVIHFVSRTAMNIDGLGERIVEVLY 454

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             +     I   AD++TL+R +  +      +   G+  V  L  +I   +  SLER +F
Sbjct: 455 NED----IINDVADLYTLERERLLT------LERMGEKKVDKLLAAIEASKTNSLERLLF 504

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIRH+GA+ +  LA+ + +  N                 +L ++  +G+ +AQ++V +
Sbjct: 505 GLGIRHLGAKASMVLAREFGTMDNLKNAT----------VETLTQIDDIGEKMAQSLVTY 554

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIEN-KKLVFTGTLQKIQRHKAQEYVT 671
            QN   I  +E L +                   +   K +V TG L  + R +A + +T
Sbjct: 555 LQNEDIINLLEKLEQYGVNMRYTGVTKDDIELHPVFGEKTIVLTGKLTIMSRSEATKALT 614

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
            LGA V+  +++KTDI+I G + GSK EKA  LG+ +  E+
Sbjct: 615 NLGAKVTNSVTKKTDIVIAGSDAGSKREKADSLGIPVWTEQ 655


>gi|289422752|ref|ZP_06424592.1| DNA ligase (NAD(+)) [Peptostreptococcus anaerobius 653-L]
 gi|289156931|gb|EFD05556.1| DNA ligase (NAD(+)) [Peptostreptococcus anaerobius 653-L]
          Length = 700

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 242/718 (33%), Positives = 368/718 (51%), Gaps = 50/718 (6%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           + I I +L I+ AR  +  L   ++YH D YY    P I D +YD + R    +   +PD
Sbjct: 16  EDIDIGSLDIDGARDLVGDLTYTLNYHSDSYYNKDNPEISDYQYDRMMRCLIGLEDKYPD 75

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L     P+ P  ++GG       +  H  P LSL  +++ E++R F  R+          
Sbjct: 76  LKA---PDSPSVRVGGRALEKFDQYRHQRPMLSLGNVFSEEEIRDFDRRVR----SSVSG 128

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + + +E KIDG  + + Y++G     A RGDG  GE+V+  I+ I TIP  +  +    
Sbjct: 129 DVNYVVEFKIDGLSVGLTYDQGVLQIGATRGDGFIGENVTDNIKTIKTIPIKIDEDRK-- 186

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +  RGEVYISK DF A+N   I      YANPRN A+G LR+L+      R L+ F+  L
Sbjct: 187 LIARGEVYISKADFEAVNAYQIDHDLPVYANPRNLAAGSLRQLDSRLAAKRPLDIFIFNL 246

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               E+  K   E  + M  LG  +N G +       ++ +       R  L YDIDG+V
Sbjct: 247 ENMDELGIKKHSESFEYMESLGLKINKGYKLCTNIDEVIDHIEYWTDKRGQLDYDIDGMV 306

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVD    ++ LG  A+SPRW  ++KF  ++  T+LLDI+I++GRTG LTP A LEP+ +
Sbjct: 307 IKVDSLDQREVLGFTAKSPRWATAYKFPAEKKKTKLLDIEIEVGRTGTLTPTAVLEPIRL 366

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ A+LHNEDYIK            RDIR+GD VLV++AGE+IP+V+++  +ER  
Sbjct: 367 AGTSVSRASLHNEDYIK-----------ERDIRIGDTVLVQKAGEIIPQVLEVDFDERDG 415

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
               F  P  CP+C    VR          AA +C   ++C AQ    + HFVSRDA +I
Sbjct: 416 SEIVFEMPKHCPVCGEETVRLEGE------AAVKCIN-ISCPAQIRRGIIHFVSRDAMDI 468

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EG+G+  +      E     I+  AD++ L          +E +   G  SV NL  SI 
Sbjct: 469 EGMGESIVKLLLDKE----LIKDIADLYYL------DPNDLEQLERMGKKSVANLMASIE 518

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +   L R I  LGI+ VG + A+ LAK Y +        +            LI++  
Sbjct: 519 KSKTNELWRLINGLGIKFVGLKGAKLLAKAYNNLDEIMAASS----------EDLIKIDE 568

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKI 661
            G I++ ++ +F++  +N   +E L +         E+        E  K+V TGTL  +
Sbjct: 569 FGTIMSDSVEKFFEEDKNKETIEKLRRAGLNFENIKEEKTDRPMLFEGMKIVLTGTLPTM 628

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +R+ A++ +  LG   ++ +S+ TD ++ G+  GSKL+KA  LGVK+++E +F+ +L 
Sbjct: 629 KRNDAKKIIEDLGGRATSSVSKSTDFVLAGEEAGSKLDKAISLGVKVIDEARFVSILD 686


>gi|311740579|ref|ZP_07714406.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304099|gb|EFQ80175.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 689

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 204/717 (28%), Positives = 345/717 (48%), Gaps = 53/717 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
              +E + L QE+  H + YY   +P I D+++DAL +R  A+    P+LA    P+ P 
Sbjct: 9   DLHREWNDLAQEVRRHRNLYYN-GEPAIPDADFDALFQRLLALEEEHPELAV---PDSPT 64

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G   +     + H    +SL+ +++  +++ ++ R           +  +  E KID
Sbjct: 65  QQVGAAPSAG-EDIEHLERMMSLDNVFSAGEMQDWLDRT---------PAKTYLTELKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEV 191
           G  I + Y  G+   AA RGDG  GE+++A  R I  IP  L+       PE+IE+RGEV
Sbjct: 115 GLSIDLVYRNGRLTTAATRGDGTVGEEITANARVIEDIPHELTGTDEYPVPELIEIRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+   DF  +N+E  A G+  +ANPRNAA+G LR  +P +   R L    HGLG      
Sbjct: 175 YMRPEDFEEINEERAADGKDKFANPRNAAAGGLRMKDPAEVKKRRLKMVCHGLGAREGFS 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q++  + +   G PV+   +Q  +   +          R    +++DGLV KVD+ +
Sbjct: 235 PSSQHDAYKAIAAWGLPVSPYTKQVYSAKEVQDEVAHWAEHRHDAIFEMDGLVVKVDDLA 294

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG  +R+PRW I++K+  ++ +T+L +I++ +GRTG +TP A +EPV + G+ +  
Sbjct: 295 SQRALGATSRAPRWAIAYKYPPEEVTTKLKNIEVGVGRTGRVTPYAVMEPVFVSGSTVEM 354

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+  +K            + + +GD V++++AGE+IP+V+  +  +R      ++F
Sbjct: 355 ATLHNQSEVKR-----------KGVLIGDTVIIRKAGEIIPEVLGPVREQRDGSEHEWTF 403

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C +++            A  RC    +C AQ   RL++  SR A +IE LG++ 
Sbjct: 404 PENCPACGTKLA-----PQKDGDADWRCPNTQSCPAQLSARLEYLASRKALDIEALGEKG 458

Query: 491 LDFFFKSE--------DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
                 +             + ++ A      ++        +      + +  NL  ++
Sbjct: 459 AMDLIDNGILVDESELFELTAEKLLASDVYTAKKDTKDKRSKKEGNAKVNTAGQNLLSNL 518

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + +     R + SL IRHVG   AR+LA  Y S                     L  V 
Sbjct: 519 EEVKGRDFWRVLVSLSIRHVGPIAARALASRYGSMDRLRAA----------KTEELAEVD 568

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            VG  IAQ+  ++++   +   V+             E +    +E   +V TG+L+   
Sbjct: 569 GVGMTIAQSFHDWFEVDWHRTIVDKWAAAGVAMEVAAEDHKEQTLEGLTIVVTGSLENFT 628

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R  A+E +   G   +  +S+KT  ++ G N GSK +KA++L + I+NE QF  LL+
Sbjct: 629 RDSAKEAIVSRGGKATGSVSKKTSYLVAGANAGSKEDKARELDIPILNESQFQQLLE 685


>gi|261366975|ref|ZP_05979858.1| DNA ligase, NAD-dependent [Subdoligranulum variabile DSM 15176]
 gi|282571093|gb|EFB76628.1| DNA ligase, NAD-dependent [Subdoligranulum variabile DSM 15176]
          Length = 661

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 217/709 (30%), Positives = 343/709 (48%), Gaps = 51/709 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  EQA+K    L   I  ++  YY    P + D EYDAL R   AI   FPDL     P
Sbjct: 1   MEREQAQKRAEELRAVIEKNNRLYYDQDAPELEDFEYDALTRELKAIETEFPDLV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P   +GG  +    KVTH++   SL+  +++E+LR F +R+     K       + +E
Sbjct: 58  ESPTQHVGGTASSKFTKVTHAVKMESLQDAFSLEELRDFDSRVREAGIKP-----EYVVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  +++ Y  G+ V  + RGDG  GEDV+  +  I  IP  L  N P  +EVRGEV
Sbjct: 113 AKIDGLSVSLEYRNGRLVRGSTRGDGMVGEDVTENLATIRDIPLQL-ENAPAFLEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+    F  L ++     + P+ NPRNAA+G LR+ N      R L+ FV  L +     
Sbjct: 172 YMPHAAFFKLKEQQELEDKTPFKNPRNAAAGSLRQKNAKITAERGLSIFVFNLQQCEGRS 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +E L  ++ LGFPV+      ++    +     +  +R TL +DIDG V KV++ +
Sbjct: 232 FATHHETLDYIKSLGFPVSPRYSVFSSIEDAIREIQTIGELRGTLEFDIDGAVIKVNDLA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG   + PRW I+ K+  +   + + DI++ +GRTG+LTP A  +PV + G  ++ 
Sbjct: 292 ARRVLGSTNKFPRWAIAFKYPPEVKESVVRDIEVTVGRTGVLTPTAVFDPVFLAGTSVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D I  L            + +GD + V++AG++IP+V+ +  +   PD++PF  
Sbjct: 352 ASLHNGDIISSL-----------GVGIGDTIQVRKAGDIIPEVIAVSAHG--PDSKPFMM 398

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + VV   +        A RC      +      L HF SRDA  I+GLG+  
Sbjct: 399 PTVCPSCGAPVVHLQDET------ALRCVNPECPAQSL-RNLIHFASRDAMAIDGLGEAV 451

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                +       +   AD+++L   Q  +      +  F   S  NL  +I   +  +L
Sbjct: 452 AIQLTEKN----LVHTVADLYSLNEEQLLT------LDKFKKKSAQNLLTAIEHSKTNNL 501

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ++ +F LGIR++G + A  LA+++ S +                   +  V   G ++AQ
Sbjct: 502 DKLLFGLGIRNIGDKAAALLAEHFGSMEAIRSA----------GVEQMCEVDGFGAVMAQ 551

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ EF+        +  L K              + +  K LV TGTL  + R +A+  +
Sbjct: 552 SVREFFDKEGTSDLLARLEKAGVNMQW-TGTPKGTALAGKTLVVTGTLPTLSRQEAEALI 610

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            Q G   S  +S+KT  ++ G   GSKL KAQ LG+ +++E     L+Q
Sbjct: 611 VQNGGKASGSVSKKTSYVVAGTAAGSKLTKAQALGIPVIDEAGLYALIQ 659


>gi|298484007|ref|ZP_07002176.1| DNA ligase, NAD-dependent [Bacteroides sp. D22]
 gi|298269788|gb|EFI11380.1| DNA ligase, NAD-dependent [Bacteroides sp. D22]
          Length = 666

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 226/709 (31%), Positives = 354/709 (49%), Gaps = 51/709 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L  E+  H+  YY  + P I D E+D   R    +  A P+     D N P 
Sbjct: 2   DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEYK---DENSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G ++N +  +V H  P LSL   ++  ++  F  R+ +      +       E K D
Sbjct: 59  MRVGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRVRKAL----NEDFEICCEMKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           GT I++ YE GK V A  RGDG  G+DV+  ++ I +IP VL   N P   E+RGE+ + 
Sbjct: 115 GTSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
              F  LN E  A     +ANPRNAASG L+  N + +                +   G 
Sbjct: 175 WEVFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGDNLPCDGH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           YE LQ+    GF +++  R+  T   +  + N     R  LP   DG+V KV+    QK 
Sbjct: 235 YENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKN 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LH
Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-HPDAQPFSFPSF 433
           N D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F   
Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFIVN 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S++VR          AAH C    AC  Q   +++HF+SR A NI+GLG + +D 
Sbjct: 404 CPECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDM 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F++       I   AD++ L             +   G+ S  N+   I + + +  ER 
Sbjct: 458 FYR----LGLIENTADLYKLTADDIKG------LDRMGEKSAENIVTGIAQSKTVPFERV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           IF+LGIR VG  +A+ +AK + +  +  Q           D   L+ +  +G+ IAQ+I+
Sbjct: 508 IFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIAQSIL 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYV 670
            ++ N  N   V  L KE    + R E+++S    ++  + +V +G      R + +E +
Sbjct: 558 AYFANESNRELVNRL-KEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFIHHSRDEYKELI 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            + G      +S KT  I+ GDN G +KLEK ++LG+ I++E++FL L+
Sbjct: 617 EKNGGKNVGSISAKTSFILAGDNMGPAKLEKVKKLGITILSEDEFLKLI 665


>gi|255535523|ref|YP_003095894.1| DNA ligase [Flavobacteriaceae bacterium 3519-10]
 gi|255341719|gb|ACU07832.1| DNA ligase [Flavobacteriaceae bacterium 3519-10]
          Length = 667

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 215/709 (30%), Positives = 365/709 (51%), Gaps = 47/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E  ++++ +L +EI  H+  YY   +P I D E+D   +    +   FP+     D N 
Sbjct: 2   PENIQQKIDALRKEIHQHNYSYYSLDEPTISDFEFDLKLKELQDLELQFPEF---YDNNS 58

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG++  +   V H     SL+  ++  DL ++  RI +      +  + F  E K
Sbjct: 59  PTLRVGGQITKNFPTVQHQFRMFSLDNSYDFNDLEEWEKRIRKTL----NEPVEFVAELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  I+I YE GK   A  RGDG  G+++++ ++ I  IP  L  + PE   +RGE+Y+
Sbjct: 115 YDGASISILYENGKLNEAVTRGDGFQGDEITSNVKTISQIPMQLHGDFPERFFMRGEIYL 174

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
           +  +F  +N      G  P+ NPRN ASG L+  +  ++ +     V     +    A+ 
Sbjct: 175 THQNFEKINKRREEEGLDPFMNPRNTASGSLKMQDSGEVRKRGLSAVLYQFISENTAAQT 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            +E+LQK +  GF +++  +       + ++ N     R TL +DIDG+V KV++ + Q+
Sbjct: 235 HWELLQKAKSWGFRISDQAKLCADLDEVKAFINFWDENRHTLAFDIDGIVVKVNDLAQQR 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW +++K+  ++A T L  +  Q+GRTG +TPVA L+PV + G ++  A+L
Sbjct: 295 VLGYTAKSPRWAMAYKYKAEKAETELQTVTYQVGRTGAITPVANLKPVLLAGTVVKRASL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HNED I+ L            +   D V V++ GE+IPK+V + + +R+P      +   
Sbjct: 355 HNEDIIRKL-----------GLYEHDFVYVEKGGEIIPKIVGVNLAKRNPANAEIQYIKN 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + ++R  +       A H C   L C  Q + R+ H+VSR A NIE LG + ++ 
Sbjct: 404 CPECSTALIRVED------QAIHFCPNELHCPPQVIGRMIHYVSRKALNIENLGSETIEQ 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            ++ +     +  PAD + L + Q      +  +    + S  N+   I K + I+ E+ 
Sbjct: 458 LYREK----LVENPADFYALTKEQ------LLPLERMAEKSAQNIITGIEKSKEIAFEKV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F +GI+HVG  +A+ L K + S  +                  L++V  +G  IA++I 
Sbjct: 508 LFGIGIKHVGETVAKKLVKNFNSIDDLKNATAA----------ELVQVEDIGLKIAESIT 557

Query: 614 EFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           EF++NP N+  +E L              + +S+ ++ K  +FTG L    R  A+E V 
Sbjct: 558 EFFKNPENVLMIERLKSYGVKLEKGADTHEVLSNALDGKTFLFTGKLSLFTRDDAEEMVE 617

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719
           + G    + +S+  D ++VG+  GSKL+KAQ++G + I++E+QFL LLQ
Sbjct: 618 KHGGKNISAVSKNLDFLVVGEKAGSKLKKAQEIGTITILDEQQFLDLLQ 666


>gi|306835907|ref|ZP_07468900.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49726]
 gi|304568181|gb|EFM43753.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49726]
          Length = 689

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 208/723 (28%), Positives = 351/723 (48%), Gaps = 61/723 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +    ++E + L QE+  H + YY   +P I D+++DAL +R   +    P+LA    P+
Sbjct: 6   NPADVQREWNDLAQEVRRHRNLYYN-GEPAIPDADFDALFQRLMDLEKQHPELAV---PD 61

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G   N     + H    +SL+ +++  +++ ++ R           +  +  E 
Sbjct: 62  SPTQQVGATPNAG-EDIEHLERMMSLDNVFSAGEMQDWLDRT---------PAKTYLTEL 111

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVR 188
           KIDG  I + Y  G+   AA RGDG  GE+++A  R I  IP  L+       PE+IE+R
Sbjct: 112 KIDGLSIDLVYRNGRLDTAATRGDGTVGEEITANARVISDIPHELTGTDEYPVPELIEIR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247
           GEVY+   DF  +N+E  + G+  +ANPRNAA+G LR  +P +   R L    HGLG   
Sbjct: 172 GEVYMRPEDFEEINEERASDGKARFANPRNAAAGGLRMKDPAEVKKRRLRMVCHGLGARE 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 Q++  + +   G PV+    Q ++   +    +     R    +++DGLV KVD
Sbjct: 232 GFSPSSQHDAYKAIAAWGLPVSPYTTQVHSAAEVQKEVSYWAEHRHDAIFEMDGLVVKVD 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   Q+QLG  +R+PRW I++K+  ++ +T+L +I++ +GRTG +TP A +EPV + G+ 
Sbjct: 292 DLGSQRQLGATSRAPRWAIAYKYPPEEVTTKLKNIEVGVGRTGRVTPFAIMEPVFVSGST 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHN+  +K            + + +GD +++++AGE+IP+V+  +  +R      
Sbjct: 352 VSMATLHNQSEVKR-----------KGVLIGDTIIIRKAGEIIPEVLGPVREQRDGSEYE 400

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +SFP+ CP C + +            A  RC    +C AQ   RL++  SR   +IE LG
Sbjct: 401 WSFPTQCPACGTTLA-----PQKDGDADWRCPNTQSCPAQLSARLEYLASRKGLDIEALG 455

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT----------- 536
           ++      ++      +   +++F L   +  ++          D               
Sbjct: 456 EKGAMDLIEN----GILTDESELFELTEEKLLASDVYTAKRDTKDKRSKKEGNVKVNTAG 511

Query: 537 -NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            NL  ++ + ++    R + SL IRHVG   AR+LA  Y S +                 
Sbjct: 512 KNLLQNLEEVKDRDFWRVLVSLSIRHVGPIAARALAARYGSMEKLRAA----------KT 561

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
             L  V  VG +IA++   +++   +   VE   +         E      +E   +V T
Sbjct: 562 EDLAEVDGVGAVIAESFHAWFEVDWHRTIVEKWAEAGLAMEVAAEDRKEQTLEGLTIVVT 621

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G+L+   R  A+E +   G   +  +S+KT  ++ G N GSK +KA+ LGV I+NEEQF 
Sbjct: 622 GSLEDFTRDSAKEAIISRGGKATGSVSKKTSYLVAGANAGSKEDKARDLGVPILNEEQFH 681

Query: 716 FLL 718
            LL
Sbjct: 682 TLL 684


>gi|241760920|ref|ZP_04759009.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374539|gb|EER64000.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 731

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 297/733 (40%), Positives = 441/733 (60%), Gaps = 51/733 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +  + LS EQA  EL  L   IS++D  Y+    P + DSEYDAL  R   I   FPDL 
Sbjct: 21  LAPKDLSREQAVIELERLANLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLI 80

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R   P+ P  K+G   N  L K+ H    LSL+  +  +D+  F+ R+ RF+  K++ ++
Sbjct: 81  R---PDSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVEDFLGRVRRFFNLKENQAV 137

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEII 185
             T+EPKIDG   ++RYEKG    A  RGDG  GEDV+  +R I  IP+ L   N PEII
Sbjct: 138 ICTVEPKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRVIDDIPKTLKGDNWPEII 197

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           E+RGEVY++K+DF ALN       +K +ANPRNAA+G LR+L+P     R L F  HG G
Sbjct: 198 EIRGEVYMAKSDFAALNARQTEENKKLFANPRNAAAGSLRQLDPNITARRSLRFLAHGWG 257

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           + + + A  QY M++ +   G  V+N + +A+    ++ +Y ++++ R+ L +DIDG+VY
Sbjct: 258 EATSLPADTQYGMMKMIESYGLSVSNLLARADNIGQMLDFYQKIEAERADLDFDIDGVVY 317

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+D+   Q++ G  AR+PR+ ++HKF  ++A T LLDI+IQ+GRTG+LTPVA+LEPV +G
Sbjct: 318 KLDQLDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVGRTGVLTPVAKLEPVTVG 377

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++++ATLHN D I+ L A           R GDRVLV+RAG+VIP++V+ + ++   D
Sbjct: 378 GVVVSSATLHNSDEIERLGA-----------RPGDRVLVQRAGDVIPQIVENLTSDV--D 424

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              + FP  CP+C S   R+          A RCTGGL C AQ++ERL HFVSR AF IE
Sbjct: 425 RPIWHFPHRCPVCDSVARREEGE------VAWRCTGGLICPAQRVERLCHFVSRTAFEIE 478

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLGK  ++ FF  +     I  PADIF L +++Q    +     G+G++SV NL  +I+K
Sbjct: 479 GLGKSHIESFFADK----LIETPADIFRLFQKRQLLIER----EGWGELSVDNLISAIDK 530

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN-------IIAHNNDDWL- 596
           RR +  +RF+F+LGIRHVGA  AR LAK Y ++ NF   I+        +   + +    
Sbjct: 531 RRKVPFDRFLFALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQPSSEESEEK 590

Query: 597 -------SLIR---VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
                   LI    +P +G  I +++++F+    N   V  LL+EV       E   SS 
Sbjct: 591 YQKRVDKELISFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLYFE-LASSP 649

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K +VFTG+LQKI R +A+     LGA V++ +S+KT++++ G+  GSKL KA++L +
Sbjct: 650 LSGKIIVFTGSLQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKELDI 709

Query: 707 KIMNEEQFLFLLQ 719
            I++E+++  +++
Sbjct: 710 SIIDEDRWHRIVE 722


>gi|300856841|ref|YP_003781825.1| DNA ligase [Clostridium ljungdahlii DSM 13528]
 gi|300436956|gb|ADK16723.1| DNA ligase [Clostridium ljungdahlii DSM 13528]
          Length = 664

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 222/705 (31%), Positives = 353/705 (50%), Gaps = 47/705 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
               + L++ I+YH+D YY    P + D EYD L +    I    P++     P+ P   
Sbjct: 4   EDRYNELKKIINYHNDRYYNQDNPEVSDYEYDMLMQELKNIEREHPEVI---TPDSPTQH 60

Query: 78  IGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +GG     S   V H +P LSL  ++N ED+ +F+  +           + F +E KIDG
Sbjct: 61  VGGNAKRESGVLVRHRVPMLSLRDVFNKEDVEQFVDDVK-----AQFPDVEFVVETKIDG 115

Query: 137 TMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
             + +RYE GK + A  RGDG   GEDV+   + I  + + L   IP + E+RGEVY++K
Sbjct: 116 LSMALRYEDGKLITAITRGDGIVYGEDVTVNAKVINDVVKSLKDKIPYL-EIRGEVYMTK 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  +N+    +G+K +ANPRN A+G LR+L+      R L+ F+  +     +  K  
Sbjct: 175 QAFENVNEHQELLGKKVFANPRNCAAGTLRQLDSKVTKERNLSLFIFNVQDVRGMEFKTH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E  + ++  G  V        T   I      +   R  L YDIDG V K++  + + +
Sbjct: 235 TEGYEFLKKQGIKVIENYTVCKTTGEIWDAIERIGENRGDLDYDIDGAVIKINNLAYRTE 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++ P+W I++K+  ++  T+LLDI + +GRTG +TPVA  EP+ + G  ++ ATLH
Sbjct: 295 LGSTSKVPKWAIAYKYPPEEKETKLLDIQLTVGRTGRITPVAIFEPIRLCGTSVSRATLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N+D+I  L           D+ VGD ++V ++GE+IPK+  +I  +R      F FP  C
Sbjct: 355 NQDFIDEL-----------DVGVGDTIVVYKSGEIIPKIKKVIHEKRPEGTVKFQFPDKC 403

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S V R+         AA      + C +  ++R+ +FVSRD  +I+G G   ++  
Sbjct: 404 PVCGSPVAREEG-------AADIKCTNINCPSMLVKRIINFVSRDCMDIKGFGAAYVEQL 456

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    I    DI+ L   +     +        + +   L D+I   +    +R +
Sbjct: 457 VDK----GYIDDIPDIYHLNEYRDKLVEEGII---GKEKNTDKLLDAIENSKKNEPQRLL 509

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            SLGI +VG   A+ L KY+ S  N              D   + +V  +GDI A AI E
Sbjct: 510 ASLGISNVGKSTAKELMKYFKSIDNLINA----------DIDEIKKVSDIGDISASAIFE 559

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +++N  N+  +  L K     +    K   + +E  K V TGTL  + R +A+E + + G
Sbjct: 560 YFKNEDNLKIISELAKCGVNMVMNENKEEDNLLEGSKFVITGTLPSMGRTEAKELIEKHG 619

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             VS  +S+KT  ++ GD PGSK+ KAQ+LGVK+++E + L +L+
Sbjct: 620 GKVSGSVSKKTTYVLAGDAPGSKVTKAQELGVKVISEAELLQMLK 664


>gi|218754780|ref|ZP_03533576.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis GM 1503]
 gi|289763195|ref|ZP_06522573.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis GM
           1503]
 gi|289710701|gb|EFD74717.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis GM
           1503]
          Length = 690

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 206/723 (28%), Positives = 329/723 (45%), Gaps = 44/723 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    +  +  ++  +L +E+  H   YY    PII D+E+D L RR +A+    P+L  
Sbjct: 4   PDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL-- 61

Query: 68  SEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              P+ P   +GG         V H    LSL+  +  ++L  +  RI+           
Sbjct: 62  -RTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH--- 117

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIP 182
            +  E KIDG  +++ Y +G+   A+ RGDG +GEDV+   R I  +P  L       +P
Sbjct: 118 -YLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVP 176

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
           E++EVRGEV+   +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    H
Sbjct: 177 EVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICH 236

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           GLG          ++    +R  G PV+     A    G+    +     R  + ++IDG
Sbjct: 237 GLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVDE +LQ++LG  +R+PRW I++K+  ++A T+LLDI  +         V   +  
Sbjct: 297 VVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIPGERRPHRADHAVCVHDAG 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
             G   +  ATLHN              +G  D+R       +R     P+V+  +V  R
Sbjct: 357 EGGRVDVGQATLHNASR---------SAQGRADLRHRGDPQGRRR---DPEVLGPVVELR 404

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + F  P+ CP C S +  +      +  A  RC     C  Q  ER+ H  SR+  
Sbjct: 405 DGSEREFIMPTTCPECGSPLAPE-----KEGDADIRCPNARGCPGQLRERVFHVASRNGL 459

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IE LG +      +++     I    ++F L  R    T       G    +   L  +
Sbjct: 460 DIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVN 515

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           ++K +   L R + +L IRHVG   AR+LA  + S    A                L  V
Sbjct: 516 LDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAA----------STDQLAAV 565

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             VG  IA A+ E++    +   V+         +   +++V   +    +V TG+L   
Sbjct: 566 EGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGF 625

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R  A+E +   G   +  +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL   
Sbjct: 626 SRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLADG 685

Query: 722 NTT 724
             +
Sbjct: 686 PAS 688


>gi|260904918|ref|ZP_05913240.1| DNA ligase, NAD-dependent [Brevibacterium linens BL2]
          Length = 729

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 210/746 (28%), Positives = 355/746 (47%), Gaps = 67/746 (8%)

Query: 8   PIEALSIEQARKE-LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
               LS   AR +  + L ++I      YY+   P++ D+EYD L  R + +   FP+L 
Sbjct: 12  DTSDLSDATARAQAHADLVEKIEEQRAAYYKDDSPLVADAEYDDLVHRLEDLEEKFPELV 71

Query: 67  RSEDPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
                + P   +GG ++  +   V H     SL+ +++ E+LR +  R+          +
Sbjct: 72  TD---SSPTQTVGGNVDTSTFDPVEHIGRMYSLDNVFDFEELRGWYDRVR----AATSAT 124

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEI 184
             F  E KIDG  + + Y  G+ V AA RGDG  GED++A +R I  IP  L     P  
Sbjct: 125 SKFLCELKIDGLAVNLLYRNGELVRAATRGDGRIGEDITANVRTISDIPDHLDTDYPPAE 184

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGEV+     F  LN  ++  G+ P+ANPRN+A+G LR+ +P     R L+  VHG+
Sbjct: 185 VEIRGEVFFPLEKFTELNAALVEEGKAPFANPRNSAAGSLRQKDPAVTAVRPLHMLVHGI 244

Query: 244 GKTS-----EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
              +           Q E+ ++ R  G P++   +   T   I  +       R  + ++
Sbjct: 245 AVWTPADDSHPEPAHQSEVYEQFRSWGLPISEYFKVLETVDEIEEFITYYGEHRHDVTHE 304

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           +DG+V K+D+ ++Q+ LG  +R+PRW  + K+  ++ +T+LLDI +Q+GRTG +TP A +
Sbjct: 305 LDGIVIKIDDIAVQETLGYTSRAPRWATAFKYPPEEVTTKLLDIQVQVGRTGRVTPFAVM 364

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G+ +  ATLHN   +K            + + +GD V +++AG+VIP+V+  +V
Sbjct: 365 EPVTVAGSTVERATLHNGYEVKR-----------KGVLIGDTVTLRKAGDVIPEVLGPVV 413

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            +R      F  P+ CP C + +      +        RC    +C AQ   R+ +  SR
Sbjct: 414 AQRDGSEYEFVMPTHCPSCGTELG-----EQKAGDKDKRCPNARSCPAQLANRIFYLASR 468

Query: 479 DAFNIEGLGKQQLDFFFKSEDP-AFSIRIPADIFTLQRRQQTSTTKIENI---------- 527
            AF+IE LG++         +P +  +   A +F L            N           
Sbjct: 469 AAFDIEALGEEAALALTAPAEPESPPLTSEAFLFDLTAEDLAEVKIWRNKKVKGVETGER 528

Query: 528 --------------LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                               +   L+D ++K ++  L R + +L IRHVG   AR+LA +
Sbjct: 529 ELVPYFYTRPTAKKPSAPSANTKKLFDELDKAKDQDLWRVLVALSIRHVGPTAARTLAAH 588

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + + +               +   L  V  +G  IA +I +++    ++  VEA  +   
Sbjct: 589 FRTLEAIRAA----------ELEELSAVDGIGSTIAASIRDWFAVDWHVEIVEAWAEAGV 638

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L    R   +E +   G   ++ +S+KTD ++ G+N
Sbjct: 639 RMEDEEQETGEQTLEGLTIVATGSLSTFTRDGIKEAILGAGGKAASSVSKKTDYVVAGEN 698

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GSKLEKA+ LGV++++E+ F  LL+
Sbjct: 699 AGSKLEKAESLGVRVLDEDTFRILLE 724


>gi|300214970|gb|ADJ79386.1| DNA ligase(Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus
           salivarius CECT 5713]
          Length = 672

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 238/719 (33%), Positives = 395/719 (54%), Gaps = 55/719 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S +    EL  L  +++   + YY    P + DS YD   +R   +  A PDL  +   
Sbjct: 1   MSQKDIEMELKELRDKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     KV+H IP LSL  +++ E+L +F+ R+    ++K    + ++ E
Sbjct: 58  DSPSQRVGGKVLSGFTKVSHDIPMLSLGDVFSKEELIEFLERLENSVEQK----LDYSCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE GKF+  + RG+G  GED++  ++ I  IP  L+  +   IEVRGE 
Sbjct: 114 LKIDGLAISLTYENGKFIKGSTRGNGVIGEDITENLKTIKAIPMELNEPVS--IEVRGEC 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN +  A G+  +ANPRNAA+G LR+L+     +R L+ F++ L +  ++ 
Sbjct: 172 YMPKKSFVELNTKREAEGQAVFANPRNAAAGSLRQLDTKITASRNLSTFIYYLMEPEKLG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q E L K+   GF VNN  +Q  T   I +Y ++    R+ LPYDIDG+V K + F+
Sbjct: 232 IKTQTEALNKLESWGFKVNNESKQVKTKEEIFAYIDKATDQRANLPYDIDGIVLKAESFA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q Q+G   + PRW I++KF   +  T++LDI+  +GRTG++TP A +EPV + G  +  
Sbjct: 292 VQSQVGNTVKVPRWAIAYKFPPDEQETKVLDIEWTVGRTGVVTPTAVMEPVTLAGTTVAR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DY++            +DIR+GD V + +AG++IP++ ++++ +R  D+  +  
Sbjct: 352 ASLHNPDYLR-----------EKDIRIGDTVKLHKAGDIIPEISEVVLAKRSEDSVEYQI 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C +++V   +        A RC     C A   E L HF SR+A +I GLG + 
Sbjct: 401 PTECPECGAKLVHLDDE------VALRCINPQ-CPALVKESLTHFASRNAMDIRGLGPRI 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  +  E     I+  A I++L   Q  +      +  F + S  NL  +I+  RN S+
Sbjct: 454 IEQLYNRE----MIKDVAGIYSLTFEQLIT------LDKFKEKSANNLLTAIDNSRNNSI 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA++AR LA+ Y S  N A+               +  +  +G II  
Sbjct: 504 ERLIFGLGIRHVGAKVARILAENYKSMDNLAKA----------KSDEISTIDSLGKIIGD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI-------GRHEKNVSSEIENKKLVFTGTLQKIQR 663
           ++  ++ +   +  ++ L +              + E +  S     ++V TGTL  ++R
Sbjct: 554 SVEMYFADEHVMELLDELRQAGVNLEFLGKTREEQLESSTDSSFNGLRVVLTGTLDTLKR 613

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +A+ ++   GA V+  +S+KTD++I G + GSKL KAQ+L V++MNE +F+  +++ +
Sbjct: 614 SEAKSWLEAHGAKVTGSVSKKTDLLIAGHDAGSKLTKAQELNVRVMNEAEFIQQMEEES 672


>gi|332829049|gb|EGK01713.1| DNA ligase [Dysgonomonas gadei ATCC BAA-286]
          Length = 665

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 211/711 (29%), Positives = 347/711 (48%), Gaps = 51/711 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++++ +L +E++ H+  YY  S P I D E+D   +    +    P+     D N 
Sbjct: 1   MDHIKQQIEALREELNKHNHDYYVLSSPTISDFEFDKKLKELSELETLHPEYF---DANS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G ++N S  +V H  P LSL   +   ++  F  R+ +      ++      E K
Sbjct: 58  PTQRVGSDINKSFRQVKHRYPMLSLGNTYTEAEVTDFYNRVQKGL----NDEFEIVCELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
            DGT I++ Y  G+   A  RGDG  G+DV+A +R I +IP  L  N  P   E+RGE+ 
Sbjct: 114 YDGTSISLTYVNGELTQAITRGDGVQGDDVTANVRTIRSIPLRLHGNDYPAEFEIRGEIL 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +  + F  LN E        +ANPRNA SG L++ +P  +                +   
Sbjct: 174 MPWSVFEDLNKERAEQEEALFANPRNAGSGTLKQQDPKIVASRKLDSYLYYMLGENLPTD 233

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
           G YE L K +  GF +++  ++  T   I +Y +     R  LP   DG+V KV+  + Q
Sbjct: 234 GHYENLMKAKEWGFKISDATKKCKTLDEIFAYVHYWDIERKNLPVATDGIVLKVNSLTQQ 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  ++ PRW I+ KF  ++A T L  +  Q+GRTG +TPVA L+ V + G  +  A+
Sbjct: 294 RNLGYTSKFPRWAIAFKFQAEKAVTTLESVSYQVGRTGAVTPVANLKAVKLSGTTVKRAS 353

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L+NEDYI  L           D+ + D+V V++ GE+IPK+  +   +R    +   F  
Sbjct: 354 LYNEDYINLL-----------DLHINDQVYVEKGGEIIPKITGVDTTKRGIFDEKVEFTK 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +V+D         A + C   ++C  Q   R++HF++R A NI G  +    
Sbjct: 403 NCPECGTPLVKDDGE------AIYYCPNDISCPPQIKGRIEHFLTRKAMNIAGGSET--- 453

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +    A  I   AD++TL          +  +  + + S  NL DSI+   ++   R
Sbjct: 454 --VEHLYNARLIHNIADLYTL------KWQDVSRLERWAEKSARNLVDSIHASVSVPYAR 505

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +++LGIR+VG  +A+ LA  + +                     L++V  +GD IAQ+I
Sbjct: 506 VLYALGIRYVGETVAKKLALAFPNIDALMAA----------SAEELVQVDEIGDRIAQSI 555

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEY 669
           V ++    N+  V  L +         E  VS    +++   +V +GT +K  R + +  
Sbjct: 556 VRYFSEISNVEVVNKLREFG-IQFELSEDIVSQRTEKLKGLSIVISGTFEKHSRDEYKAM 614

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + Q G   S  +S KT+ I+ GDN G +KLEKA+ LGV +++EE FL +++
Sbjct: 615 IEQNGGKNSGSISSKTNYILGGDNMGPAKLEKAESLGVPVISEEVFLEMIK 665


>gi|308271402|emb|CBX28010.1| DNA ligase [uncultured Desulfobacterium sp.]
          Length = 674

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 250/710 (35%), Positives = 396/710 (55%), Gaps = 50/710 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
              K++ +L+ E+  H+  YY    P I D++YD + +    +   +P L     P+ P 
Sbjct: 8   DIAKKVENLKSELQKHNYHYYVMDDPQISDTQYDKMMQELIELEAKYPML---STPDSPS 64

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G E      ++ HS+  LSL+  ++  D+  F  R+        D  I +T EPK+D
Sbjct: 65  MKVGAEPVKKFEQIRHSVKMLSLDNAFSDSDILNFDRRVKEGLM--ADEQILYTAEPKMD 122

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-----RVLSLNIPEIIEVRGE 190
           G  + + Y+ G+ V A+ RGDG +GED+++ ++ I ++P           IP  +E RGE
Sbjct: 123 GVAVELVYKDGRLVSASTRGDGETGEDITSNVKTIRSVPLLLQQNKKEHIIPARLEARGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V ISK  F  LN++M++ G   +ANPRNAA+G LR+L+      R L  + +G+G+   I
Sbjct: 183 VIISKEGFKRLNEDMLSQGLALFANPRNAAAGSLRQLDSKVTAKRPLEIYFYGVGEVEGI 242

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             K  ++ L  ++ LG  +N  ++     + +  YY E++ +RS LPYDIDG+V KVD  
Sbjct: 243 SCKSHWDWLYALKELGLRINPYIKPKININAVCKYYKELEQMRSGLPYDIDGMVVKVDSV 302

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG +ARSPRW +++KF   Q +T++LDI +Q+GRTG +TPVA LE VNIGG  ++
Sbjct: 303 QYQEQLGTKARSPRWAVAYKFKAIQETTKVLDILVQVGRTGAVTPVACLETVNIGGVNVS 362

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNED I+            +DIR+GD VLV+RAG+VIP++V +I + R+     F 
Sbjct: 363 RATLHNEDEIR-----------NKDIRIGDTVLVQRAGDVIPEIVKVIDSARNGSEIIFC 411

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C S+++RD      +           +C A+   +++HFVS+ AF+I+GLG++
Sbjct: 412 MPQNCPSCNSQLIRDEKESLIR-------CVNNSCPAKTKAQIEHFVSKRAFDIDGLGEK 464

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++  F  +     +   ADIF L +       K+E +   G  S  NL+++I K +NI+
Sbjct: 465 LINQLFDKK----YLSSYADIFYLDK------IKMEGLERMGLKSAGNLFEAIEKSKNIN 514

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RFI++LGIRHVG  IA  LA  Y  Y+ F              +  L  +  VG I+A
Sbjct: 515 FARFIYALGIRHVGEHIAEILASKYEKYEKFCSAT----------YDDLKNIKGVGPIVA 564

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           Q+I++F     N+  +E +L      I   E   S+ ++ K  V TGTL+ + R++A   
Sbjct: 565 QSIIDFLGREDNLNNIERMLNSGVI-IRYGENRKSTTLDGKIFVLTGTLESMTRNEAIIK 623

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +   G  +S  +S+KTD ++ G +PGSK+EKA+  GV+I++E +   + +
Sbjct: 624 IKSFGGKISESVSKKTDYLVAGKSPGSKIEKAKAAGVEIIDENKLKIMFE 673


>gi|57650655|ref|YP_186789.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus COL]
 gi|81694155|sp|Q5HEL8|DNLJ_STAAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|57284841|gb|AAW36935.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus COL]
          Length = 667

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/715 (33%), Positives = 374/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  +   +   +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELNKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L             +   G   V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +                     L+ +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      ++ L  +    I +  K        E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|254495534|ref|ZP_05108458.1| DNA ligase, NAD-dependent [Polaribacter sp. MED152]
 gi|85819890|gb|EAQ41047.1| DNA ligase, NAD-dependent [Polaribacter sp. MED152]
          Length = 665

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 217/706 (30%), Positives = 364/706 (51%), Gaps = 46/706 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++ +  L  E++ H+  YY      I D E+D   +  D +    P      D N P  
Sbjct: 3   VQERIIELRNELNRHNYNYYVLDNATISDFEFDIKLKELDKLEQENPLFF---DANSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG +  +   V H     SL+  ++ +DL  +  RI +         I +T E K DG
Sbjct: 60  RVGGTITKNFNTVVHKNRMYSLDNSYSKDDLLDWEKRIQKILGTT---EISYTCELKYDG 116

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I + YE G+F+ A  RGDG  G++V+  I+ I +IP  +  +     E+RGE+ +  +
Sbjct: 117 ASINLTYENGQFIKAVTRGDGFQGDEVTNNIKTILSIPLSIQDDFVSNFEMRGEIILPLD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F  +N E +A G + Y NPRN ASG L+  +  ++ +     +     T E   K  +E
Sbjct: 177 GFNKMNQERVANGEEEYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQVVTEERKYKTHFE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L++ R +GF V   ++  N+   +  + N   + R  LPY+ DG+V KV+    Q++LG
Sbjct: 237 SLEQARKVGFKVPKTIKLVNSIDEVFEFVNLWDTKRQDLPYETDGIVIKVNNLQQQEELG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF  +Q +T L +I  Q+GRTG +TPVA L+PV + G  +  A+LHN 
Sbjct: 297 YTSKAPRWAIAYKFKAEQEATLLNEITYQVGRTGAITPVANLDPVQLAGTTVKRASLHNA 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           D+R+ D V V++ GE+IPK+V +  ++R  +++P  + + CP 
Sbjct: 357 DQIEKL-----------DVRINDTVFVEKGGEIIPKIVGVDFSKRPENSEPTVYATNCPE 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + +VR          A H C     C+ Q   R++HF+SR A +I+GLG + +D   K
Sbjct: 406 CGTELVRTAG------DAKHYCPNEFGCAPQITGRIQHFISRKAMDIDGLGGETVDLLRK 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD++ L         K+  +    + S  NL + I K + I  E+ +F+
Sbjct: 460 E----GLIQNYADLYELTVE------KVLPLERIAEKSAKNLINGIEKSKEIPFEKVLFA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG  +A+ LAK++ S  N              D+ +L+ V  +GD IAQ+I++F 
Sbjct: 510 LGIRFVGETVAKKLAKHFKSIDNLMAA----------DFETLVAVDEIGDRIAQSIIDFS 559

Query: 617 QNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            N  +I  V  L +         E  +N + +++ +  V +G   ++ R + ++ +   G
Sbjct: 560 SNLTSIQLVNRLKEAGLQLSVSAESLENQTDKLKGQIFVVSGVFHQMSRTELKKAIEDNG 619

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
             VS+ +S+KT+ I+ GDN G SKL KA+ LG++I++E+ F+  + 
Sbjct: 620 GKVSSSISKKTNFIVAGDNMGPSKLAKAETLGIQIISEQDFINKIA 665


>gi|227501728|ref|ZP_03931777.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49725]
 gi|227077753|gb|EEI15716.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49725]
          Length = 680

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 209/719 (29%), Positives = 350/719 (48%), Gaps = 61/719 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E + L QE+  H + YY   +P I D+++DAL +R   +    P+LA    P+ P  +
Sbjct: 2   QREWNDLAQEVRRHRNLYYN-GEPAIPDADFDALFQRLMDLEKQHPELAV---PDSPTQQ 57

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   N     + H    +SL+ +++  +++ ++ R           +  +  E KIDG 
Sbjct: 58  VGATPNAG-EDIEHLERMMSLDNVFSAGEMQDWLDRT---------PAKTYLTELKIDGL 107

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEVYI 193
            I + Y  G+   AA RGDG  GE+++   R I  IP  L+       PE+IE+RGEVY+
Sbjct: 108 SIDLVYRNGRLDTAATRGDGTVGEEITPNARVISDIPHELTGTDEYPVPELIEIRGEVYM 167

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAK 252
              DF  +N+E  A G+  +ANPRNAA+G LR  +P +   R L    HGLG        
Sbjct: 168 RPEDFEEINEERAADGKARFANPRNAAAGGLRMKDPAEVKKRRLRMVCHGLGAREGFSPS 227

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q++  + +   G PV+   RQ ++   +    +     R    +++DGLV KVD+   Q
Sbjct: 228 SQHDAYKAIAAWGLPVSPYTRQVHSAAEVQEEVSYWAEHRHDAIFEMDGLVVKVDDLGSQ 287

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  +R+PRW I++K+  ++ +T+L +I++ +GRTG +TP A +EPV + G+ ++ AT
Sbjct: 288 RQLGATSRAPRWAIAYKYPPEEVTTKLKNIEVGVGRTGRVTPFAIMEPVFVSGSTVSMAT 347

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+  +K            + + +GD +++++AGE+IP+V+  +  +R      +SFP+
Sbjct: 348 LHNQSEVKR-----------KGVLIGDTIIIRKAGEIIPEVLGPVREQRDGSEYEWSFPT 396

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +            A  RC    +C AQ   RL++  SR   +IE LG++   
Sbjct: 397 QCPACGTTLA-----PQKDGDADWRCPNTQSCPAQLSARLEYLASRKGLDIEALGEKGAM 451

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT------------NLYD 540
              ++      +   +++F L   +  ++          D                NL  
Sbjct: 452 DLIEN----GILTDESELFELTEEKLLASDVYTAKRDTKDKRSKKEGNVKVNTAGKNLLQ 507

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           ++ + ++    R + SL IRHVG   AR+LA  Y S +                   L  
Sbjct: 508 NLEEVKDRDFWRVLVSLSIRHVGPIAARALAARYGSMEKLRAA----------KTEDLAE 557

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           V  VG +IA++   +++   +   VE   +         E      +E   +V TG+L+ 
Sbjct: 558 VDGVGAVIAESFHAWFEVDWHRTIVEKWAEAGLAMEVAAEDRKEQTLEGLTIVVTGSLED 617

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             R  A+E +   G   +  +S+KT  ++ G N GSK +KA+ LGV I+NEEQF  LL 
Sbjct: 618 FTRDSAKEAIISRGGKATGSVSKKTSYLVAGANAGSKEDKARDLGVPILNEEQFHTLLN 676


>gi|325288902|ref|YP_004265083.1| DNA ligase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964303|gb|ADY55082.1| DNA ligase [Syntrophobotulus glycolicus DSM 8271]
          Length = 671

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/694 (34%), Positives = 357/694 (51%), Gaps = 49/694 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L+ L+ +I   D  YY    P I D EYD L R    I  A P+      P+ P  ++
Sbjct: 13  ERLNQLKTQIEEADYRYYVLDDPQITDKEYDLLMRELVEIEGAHPEWV---SPDSPSQRV 69

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG  +    KV H  P LSL+  +  E+L +F  R+             + +E KIDG  
Sbjct: 70  GGGPSAQFAKVRHREPLLSLDNAFGREELAEFDRRVRGVV-----PDAEYVVELKIDGLT 124

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEVRGEVYISKND 197
           + + YE+G    AA RGDG +GE+++A +R I ++P  L        +++RGE Y+ K  
Sbjct: 125 VALTYEEGILTRAATRGDGETGEEITANVRTIKSVPLSLRSRPAAGRLDIRGEGYLPKES 184

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYE 256
           F+ LN E    G+  +ANPRNA +G LR+L+      R L +F + L +  +I  K Q E
Sbjct: 185 FVRLNREREEEGQPLFANPRNAGAGSLRQLDSRITAGRKLGYFAYQLIQAEQIGLKTQAE 244

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +LQ ++  GF VN+  +  +    ++ Y  EM   R  LPY+IDGLV KV+ F  Q++LG
Sbjct: 245 VLQTLKEWGFQVNDSYKIFSKMEKVMEYCQEMTEERHQLPYEIDGLVIKVNRFDQQRELG 304

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  +Q  T +  IDI +GRTG+LTP A ++ V + G+ +  ATLHN 
Sbjct: 305 FTAKSPRWAIAYKFPAEQVETVVKSIDINVGRTGVLTPTAIMQEVFVAGSTVARATLHNL 364

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+GD VL+ +AG+VIP+++  I  +R      F+ P  CP 
Sbjct: 365 DNIR-----------EKDIRIGDHVLLHKAGDVIPEIIKSIPEKRTGREMIFAMPESCPA 413

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S VVR          AA+RC   ++C A+Q E L HFVSRDA NIEGLG   +     
Sbjct: 414 CDSPVVRLEGE------AAYRC-QNISCPARQREALFHFVSRDAMNIEGLGPAIIVQLLD 466

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   A ++ L+  Q       EN+   G  S  NL  +I   +   L   IF+
Sbjct: 467 K----GLIDDAAGLYDLRHEQL------ENLERMGKKSADNLIKAIEASKTRGLAPLIFA 516

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR+VG +  R LA+ Y S +   +               L  VP +G I+A +I  F+
Sbjct: 517 LGIRNVGIKAGRVLAQKYGSMEKLQEAGE----------DELCEVPDIGGIMAASITSFF 566

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           ++  N   +  L K         + + S     + +V TGTL+   R + +E +   G  
Sbjct: 567 RDRANRDFIRRLQKAGVRMTDSRQAS-SRLFAGQSIVVTGTLRSWDRREIEELIETNGGK 625

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            SA +S+KT  ++ G+NPGSK +KAQ LGV + +
Sbjct: 626 ASASVSKKTSFVLCGENPGSKADKAQALGVPVYS 659


>gi|302333569|gb|ADL23762.1| DNA ligase (polydeoxyribonucleotide syntase) [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 667

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/715 (33%), Positives = 374/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  +   +   +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L             +   G   V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +                     L+ +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      ++ L  +    I +  K        E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNESNS 667


>gi|300870442|ref|YP_003785313.1| NAD-dependent DNA ligase [Brachyspira pilosicoli 95/1000]
 gi|300688141|gb|ADK30812.1| NAD-dependent DNA ligase [Brachyspira pilosicoli 95/1000]
          Length = 663

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 238/707 (33%), Positives = 383/707 (54%), Gaps = 48/707 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E+ARK++  L   I+YH+  YY    P I D EYD L R  + +   FP+L +    
Sbjct: 1   MNLEEARKKIEQLTATINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKD--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P NK+GG +     K  H I   SL  + N E+  +F  R+ +       + I +T+E
Sbjct: 58  DSPTNKVGGTILEKFEKFEHPIAMYSLSNVMNEEEFLEFDNRMQKELNA---SKIKYTVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  + + YEKGK   A+ RGDG  GE+V+  ++ +  +P+ +     + + VRGE 
Sbjct: 115 NKFDGLALELIYEKGKLTVASTRGDGQVGENVTNNVKMMNNVPKSIKE--TKKLIVRGEA 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
            I+K DF  LN E   +   P+AN RNAASG LR+L+ ++   R L FF + +    +  
Sbjct: 173 LITKKDFEILNKEREELEEIPFANARNAASGGLRQLDSSESKKRRLKFFAYQIANYKDFD 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              +Y+ ++ +  LGF    GV        ++  Y  ++  RS + Y+IDGLV KVD+  
Sbjct: 233 LTNEYKSMEFLSELGF-TVEGVHPNIDAKKVLETYYNIQEKRSKMDYEIDGLVIKVDDVK 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  +R+PR+ ++ KF  ++  T L +I++Q+GRTG LTPVA+LEPV +GG  ++N
Sbjct: 292 YQEKLGFLSRAPRFAVAFKFKPEEKETVLKNIEVQVGRTGALTPVAKLEPVQVGGVTVSN 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            TLHN + IK            +DIR+GD V+V R+G+VIPK+V +++ +R  D++ F F
Sbjct: 352 VTLHNPNEIKS-----------KDIRIGDTVVVIRSGDVIPKIVRVVLEKRPSDSKVFEF 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C                   RC     C ++    +++FVS+ A N+E +GK+ 
Sbjct: 401 PKKCPVCGGETAVTDG------DVIVRCIN-EECPSKITRYIEYFVSKPAMNMERIGKEW 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +  F KS      ++ PAD++ + R               G+   + + +SI   +N +L
Sbjct: 454 IAVFTKS----GLVKTPADLYKITRDDLFKF------ERMGEKLASYMLESIENSKNTTL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +RFI++LGIR VG   A  LAKY+ S +NF +               L  +  +G+I A+
Sbjct: 504 KRFIYALGIRQVGETTADLLAKYFTSVENFKKAT----------IDDLQNIEGIGEISAK 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I +F  N + +  ++ LL      +      V S +  K +V TG+++   R  A+E  
Sbjct: 554 SIYDFLHNKKTLKLIDDLLDAGVNPVFEKLTTVESPLTGKNVVITGSIEGFTRTSAKETA 613

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +LGA V + +S+ TDI+IVG+  GSKL+KAQ+LG++IM  + F+ L
Sbjct: 614 ERLGATVQSAVSKNTDILIVGEKAGSKLKKAQELGIQIMEADDFIKL 660


>gi|258645494|ref|ZP_05732963.1| DNA ligase, NAD-dependent [Dialister invisus DSM 15470]
 gi|260402847|gb|EEW96394.1| DNA ligase, NAD-dependent [Dialister invisus DSM 15470]
          Length = 669

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 216/706 (30%), Positives = 358/706 (50%), Gaps = 46/706 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   +  K+   L +++ YH   YY   KP I D E+D L R    +   +P++     P
Sbjct: 1   MVTAEIIKKAEELRKKLRYHSYLYYVLDKPEITDFEFDRLYRSLVDLEKEYPEIV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+ +    K+    P LSL   ++ E+LR F  R++          + +  E
Sbjct: 58  DSPTQRVGGKASDDFRKIPFKKPMLSLANAFSAEELRDFDRRVHGGIGAM---PVEYITE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + + YE G  +    RGDG  GEDV++ ++ I TIP  +  N P  +EVRGEV
Sbjct: 115 LKIDGLSMNLIYENGSLMQGLTRGDGKVGEDVTSNVKTIKTIPLYI-ENAPAYMEVRGEV 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ +  F+ALN+E    G  P+AN RNAA+G LR+L+P     R L+FF + LG    + 
Sbjct: 174 YMPRKSFIALNEERDEAGMMPFANCRNAAAGSLRQLDPKVTAARNLDFFAYALGAEEGLD 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q ++L +++   F VN   R+ ++  G+++   E +  R  L YD DG+V KV++F 
Sbjct: 234 ISSQDDLLLQLKKFHFRVNPHYRKWDSIEGVITGVREWEKKRRELDYDTDGMVIKVNDFR 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG   + P+W I++K+  ++A T++  I + +GRTG+LTP A L PV + G  +  
Sbjct: 294 QQELLGATGKDPKWAIAYKYPPEEAVTKIEKIVVSMGRTGVLTPSADLTPVRLAGTTVKR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D+I+            +DIR GD V++ +AGE+IP++  ++  +R+   + F  
Sbjct: 354 ATLHNLDFIR-----------EKDIREGDTVIIYKAGEIIPEIAAVLKEKRNGSEKEFEM 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP+C + + R          AA RC    AC     E+L HF SRDA +IEGLG   
Sbjct: 403 PENCPVCGNSIRRIDTE------AAFRCINP-ACGGVVREKLIHFASRDAMDIEGLGPAV 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D           +   AD + L+            I   G+ S  NL  +I   +   L
Sbjct: 456 VDSLLAYR----LVADAADFYALKEDDL------RQIERMGEKSAANLITAIRASKERGL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + +F LGIR +G + +   A Y+ +                 D  ++     +G I A+
Sbjct: 506 AKLLFGLGIRFLGEKGSELAAHYFHTIDAIMAA----------DVETIEETEGIGKITAK 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ +++ + +NI  +  L           E++ S     + +V TG L  + R +A E +
Sbjct: 556 SLYDYFHDEKNIEMINKLKNAGVLMEEIKEESESGMFSGESVVLTGKLAVMGRREASELI 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +LG    + ++  T +++ G++ GSKLEKA+  G+ +++E++FL 
Sbjct: 616 KRLGGTTQSSVTNITTLVVAGEDAGSKLEKARAKGIPVIDEQEFLK 661


>gi|49484145|ref|YP_041369.1| DNA ligase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257426036|ref|ZP_05602458.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428709|ref|ZP_05605104.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431319|ref|ZP_05607695.1| DNA ligase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257434037|ref|ZP_05610388.1| DNA ligase [Staphylococcus aureus subsp. aureus E1410]
 gi|282904535|ref|ZP_06312420.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           C160]
 gi|282906308|ref|ZP_06314160.1| DNA ligase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909224|ref|ZP_06317040.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911529|ref|ZP_06319329.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282925143|ref|ZP_06332803.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           C101]
 gi|283958665|ref|ZP_06376111.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293507779|ref|ZP_06667621.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510281|ref|ZP_06668987.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M809]
 gi|293539336|ref|ZP_06672015.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295428486|ref|ZP_06821113.1| DNA ligase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590042|ref|ZP_06948682.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           MN8]
 gi|81650789|sp|Q6GFF3|DNLJ_STAAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|49242274|emb|CAG40981.1| DNA ligase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257271179|gb|EEV03336.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274353|gb|EEV05865.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257277968|gb|EEV08624.1| DNA ligase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257280963|gb|EEV11107.1| DNA ligase [Staphylococcus aureus subsp. aureus E1410]
 gi|282313101|gb|EFB43499.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           C101]
 gi|282324538|gb|EFB54850.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326792|gb|EFB57089.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330505|gb|EFB60022.1| DNA ligase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595091|gb|EFC00058.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           C160]
 gi|283789705|gb|EFC28527.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290919871|gb|EFD96940.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291094842|gb|EFE25110.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466645|gb|EFF09165.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M809]
 gi|295127468|gb|EFG57107.1| DNA ligase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297577170|gb|EFH95884.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           MN8]
 gi|312437629|gb|ADQ76700.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315193434|gb|EFU23831.1| DNA ligase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 667

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 241/715 (33%), Positives = 374/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEFKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  +   +   +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + +   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L             +   G   V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +                     L+ +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      ++ L  +    I +  K        E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|260753112|ref|YP_003226005.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552475|gb|ACV75421.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 731

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 294/735 (40%), Positives = 439/735 (59%), Gaps = 51/735 (6%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
             +  + LS EQA  EL  L   IS++D  Y+    P + DSEYDAL  R   I   FPD
Sbjct: 19  PALAPKDLSREQAVIELERLANLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPD 78

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L R   P+ P  K+G   N  L K+ H    LSL+  +  +D+  F+ R+ RF+  K++ 
Sbjct: 79  LIR---PDSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVEDFLGRVRRFFNLKENQ 135

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPE 183
           ++  T+EPKIDG   ++RYEKG    A  RGDG  GEDV+  +R I  IP+ L   N PE
Sbjct: 136 AVICTVEPKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRVIDDIPKTLKGDNWPE 195

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
           IIE+RGEVY++K+DF ALN       +K +ANPRNAA+G LR+L+P     R L F  HG
Sbjct: 196 IIEIRGEVYMAKSDFAALNARQTEENKKLFANPRNAAAGSLRQLDPNITARRSLRFLAHG 255

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G+ + + A  QY M++ +   G  V+N + +A+    ++ +Y ++++ R+ L +DIDG+
Sbjct: 256 WGEATSLPADTQYGMMKVIESYGLSVSNLLARADNIGQMLDFYQKIEAERADLDFDIDGV 315

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYK+D+   Q++ G  AR+PR+ ++HKF  ++A T LLDI+IQ+GRTG+LTPVA+LEPV 
Sbjct: 316 VYKLDQLDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVGRTGVLTPVAKLEPVT 375

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG ++++ATLHN D I+ L            +R  DRVLV+RAG+VIP++V+ +  +  
Sbjct: 376 VGGVVVSSATLHNSDEIERL-----------GVRPEDRVLVQRAGDVIPQIVENLTPDV- 423

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D   + FP  CP+C S   R+          A RCTGGL C AQ++ERL HFVSR AF 
Sbjct: 424 -DRPIWHFPHRCPVCDSVARREEGE------VAWRCTGGLICPAQRVERLCHFVSRTAFE 476

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GLGK  ++ FF  +     I  PADIF L +++Q    +     G+G++SV NL  +I
Sbjct: 477 IDGLGKSHIESFFADK----LIETPADIFRLFQKRQLLIER----EGWGELSVDNLISAI 528

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN-------IIAHNNDDW 595
           +KRR +  +RF+F+LGIRHVGA  AR LAK Y ++ NF   I+        +   + +  
Sbjct: 529 DKRRKVPFDRFLFALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQPSSEESE 588

Query: 596 L--------SLIR---VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
                     LI    +P +G  I +++++F+    N   V  LL+EV       E   S
Sbjct: 589 EKYQKRVDKELISFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLYFE-LAS 647

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
           S +  K +VFTG+LQKI R +A+     LGA V++ +S+KT++++ G+  GSKL KA++L
Sbjct: 648 SPLSGKIIVFTGSLQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKEL 707

Query: 705 GVKIMNEEQFLFLLQ 719
            + I++E+++  +++
Sbjct: 708 DISIIDEDRWHRIVE 722


>gi|90962320|ref|YP_536236.1| NAD-dependent DNA ligase [Lactobacillus salivarius UCC118]
 gi|123391334|sp|Q1WSH6|DNLJ_LACS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|90821514|gb|ABE00153.1| NAD-dependent DNA ligase [Lactobacillus salivarius UCC118]
          Length = 672

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 395/719 (54%), Gaps = 55/719 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S +    EL  L  +++   + YY    P + DS YD   +R   +  A PDL  +   
Sbjct: 1   MSQKDIEMELKELRNKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     KV+H IP LSL  +++ E+L +F+ R+    ++K    + ++ E
Sbjct: 58  DSPSQRVGGKVLSGFTKVSHDIPMLSLGDVFSKEELIEFLERLENSVEQK----LDYSCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE GKF+  + RG+G  GED++  ++ I  IP  L+  +   IEVRGE 
Sbjct: 114 LKIDGLAISLTYENGKFIKGSTRGNGVIGEDITENLKTIKAIPMELNEPVS--IEVRGEC 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN +  A G+  +ANPRNAA+G LR+L+     +R L+ F++ L +  ++ 
Sbjct: 172 YMPKKSFVELNTKREAEGQAVFANPRNAAAGSLRQLDTKITASRNLSTFIYYLMEPEKLG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q E L K+   GF VNN  +Q  T   I +Y ++    R+ LPYDIDG+V K + F+
Sbjct: 232 IKTQTEALNKLESWGFKVNNESKQVKTKEEIFAYIDKATDQRANLPYDIDGIVLKAESFA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q Q+G   + PRW I++KF   +  T++LDI+  +GRTG++TP A +EPV + G  +  
Sbjct: 292 VQSQVGNTVKVPRWAIAYKFPPDEQETKVLDIEWTVGRTGVVTPTAVMEPVTLAGTTVAR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DY+K            +DIR+GD V + +AG++IP++ ++++ +R  D+  +  
Sbjct: 352 ASLHNPDYLK-----------EKDIRIGDTVKLHKAGDIIPEISEVVLAKRTEDSVEYQI 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C +++V   +        A RC     C A   E L HF SR+A +I GLG + 
Sbjct: 401 PTECPECGAKLVHLDDE------VALRCINPQ-CPALVKESLTHFASRNAMDIRGLGPRI 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  +  E     I+  A I++L   Q  +      +  F + S  NL  +I+  RN S+
Sbjct: 454 IEQLYNRE----MIKDVAGIYSLTFEQLIT------LDKFKEKSANNLLTAIDNSRNNSI 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER IF LGIRHVGA++AR LA+ Y S  N A+               +  +  +G II  
Sbjct: 504 ERLIFGLGIRHVGAKVARILAENYKSMDNLAKA----------KSDEISTIDSLGKIIGD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI-------GRHEKNVSSEIENKKLVFTGTLQKIQR 663
           ++  ++ +   +  ++ L +              + E +  S     ++V TGTL  ++R
Sbjct: 554 SVEMYFADEHVMELLDELRQAGVNLEFLGKTREEQLESSTDSSFNGLRVVLTGTLDTLKR 613

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +A+ ++   GA V+  +S+KTD++I G + GSKL KAQ+L V++MNE +F+  +++ +
Sbjct: 614 SEAKSWLEAHGAKVTGSVSKKTDLLIAGHDAGSKLTKAQELNVRVMNEAEFIQQMEEES 672


>gi|21283574|ref|NP_646662.1| DNA ligase [Staphylococcus aureus subsp. aureus MW2]
 gi|49486723|ref|YP_043944.1| DNA ligase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87161485|ref|YP_494537.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88195803|ref|YP_500613.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151222054|ref|YP_001332876.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161510127|ref|YP_001575786.1| DNA ligase (NAD(+)) [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140357|ref|ZP_03564850.1| DNA ligase (NAD(+)) [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253734986|ref|ZP_04869151.1| DNA ligase [Staphylococcus aureus subsp. aureus TCH130]
 gi|258451030|ref|ZP_05699066.1| DNA ligase, NAD-dependent [Staphylococcus aureus A5948]
 gi|282923243|ref|ZP_06330924.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9765]
 gi|284024951|ref|ZP_06379349.1| DNA ligase [Staphylococcus aureus subsp. aureus 132]
 gi|294849453|ref|ZP_06790195.1| DNA ligase [Staphylococcus aureus A9754]
 gi|297208934|ref|ZP_06925338.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300913009|ref|ZP_07130447.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304379092|ref|ZP_07361839.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|75410712|sp|Q9AIU7|DNLJ_STAAU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81649030|sp|Q6G829|DNLJ_STAAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81704301|sp|Q7A0H1|DNLJ_STAAW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123098079|sp|Q2G1Y0|DNLJ_STAA8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123749595|sp|Q2FFJ1|DNLJ_STAA3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359293|sp|A6QID2|DNLJ_STAAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359294|sp|A8Z2R8|DNLJ_STAAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|13182984|gb|AAK15020.1| DNA ligase [Staphylococcus aureus]
 gi|21205015|dbj|BAB95710.1| DNA ligase [Staphylococcus aureus subsp. aureus MW2]
 gi|49245166|emb|CAG43632.1| DNA ligase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87127459|gb|ABD21973.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87203361|gb|ABD31171.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|150374854|dbj|BAF68114.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368936|gb|ABX29907.1| DNA ligase (NAD(+)) [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253727168|gb|EES95897.1| DNA ligase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257861272|gb|EEV84084.1| DNA ligase, NAD-dependent [Staphylococcus aureus A5948]
 gi|269941376|emb|CBI49773.1| DNA ligase [Staphylococcus aureus subsp. aureus TW20]
 gi|282593154|gb|EFB98153.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9765]
 gi|294823590|gb|EFG40017.1| DNA ligase [Staphylococcus aureus A9754]
 gi|296886424|gb|EFH25353.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|298695246|gb|ADI98468.1| DNA ligase [Staphylococcus aureus subsp. aureus ED133]
 gi|300885787|gb|EFK80994.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302751777|gb|ADL65954.1| DNA ligase (polydeoxyribonucleotide syntase) [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304342327|gb|EFM08219.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|320139715|gb|EFW31584.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320142368|gb|EFW34182.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|323439848|gb|EGA97564.1| DNA ligase [Staphylococcus aureus O11]
 gi|323443011|gb|EGB00632.1| DNA ligase [Staphylococcus aureus O46]
 gi|329314581|gb|AEB88994.1| DNA ligase [Staphylococcus aureus subsp. aureus T0131]
 gi|329728576|gb|EGG65006.1| DNA ligase (NAD+) [Staphylococcus aureus subsp. aureus 21189]
 gi|329731482|gb|EGG67845.1| DNA ligase (NAD+) [Staphylococcus aureus subsp. aureus 21193]
          Length = 667

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/715 (33%), Positives = 374/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  +   +   +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L             +   G   V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +                     L+ +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      ++ L  +    I +  K        E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|15924894|ref|NP_372428.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927478|ref|NP_375011.1| DNA ligase (polydeoxyribonucleotide syntase) [Staphylococcus aureus
           subsp. aureus N315]
 gi|148268377|ref|YP_001247320.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH9]
 gi|150394439|ref|YP_001317114.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH1]
 gi|156980220|ref|YP_001442479.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316913|ref|ZP_04840126.1| DNA ligase [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|255006691|ref|ZP_05145292.2| DNA ligase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|258408884|ref|ZP_05681166.1| DNA ligase [Staphylococcus aureus A9763]
 gi|258430016|ref|ZP_05688386.1| DNA ligase [Staphylococcus aureus A9299]
 gi|258443466|ref|ZP_05691808.1| DNA ligase [Staphylococcus aureus A8115]
 gi|258445324|ref|ZP_05693515.1| DNA ligase [Staphylococcus aureus A6300]
 gi|258447888|ref|ZP_05696022.1| DNA ligase [Staphylococcus aureus A6224]
 gi|258453321|ref|ZP_05701306.1| DNA ligase [Staphylococcus aureus A5937]
 gi|269203557|ref|YP_003282826.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282894571|ref|ZP_06302799.1| DNA ligase, NAD-dependent [Staphylococcus aureus A8117]
 gi|282928077|ref|ZP_06335684.1| DNA ligase, NAD-dependent [Staphylococcus aureus A10102]
 gi|295407285|ref|ZP_06817084.1| DNA ligase [Staphylococcus aureus A8819]
 gi|296275664|ref|ZP_06858171.1| DNA ligase [Staphylococcus aureus subsp. aureus MR1]
 gi|297246190|ref|ZP_06930041.1| DNA ligase [Staphylococcus aureus A8796]
 gi|81705420|sp|Q7A4Q5|DNLJ_STAAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81781309|sp|Q99SY3|DNLJ_STAAM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216246|sp|A7X432|DNLJ_STAA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359291|sp|A6U309|DNLJ_STAA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359292|sp|A5IU71|DNLJ_STAA9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|13701697|dbj|BAB42990.1| DNA ligase [Staphylococcus aureus subsp. aureus N315]
 gi|14247676|dbj|BAB58066.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741446|gb|ABQ49744.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH9]
 gi|149946891|gb|ABR52827.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH1]
 gi|156722355|dbj|BAF78772.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu3]
 gi|257840331|gb|EEV64793.1| DNA ligase [Staphylococcus aureus A9763]
 gi|257849610|gb|EEV73578.1| DNA ligase [Staphylococcus aureus A9299]
 gi|257851351|gb|EEV75291.1| DNA ligase [Staphylococcus aureus A8115]
 gi|257855842|gb|EEV78766.1| DNA ligase [Staphylococcus aureus A6300]
 gi|257858820|gb|EEV81689.1| DNA ligase [Staphylococcus aureus A6224]
 gi|257864529|gb|EEV87272.1| DNA ligase [Staphylococcus aureus A5937]
 gi|262075847|gb|ACY11820.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282590141|gb|EFB95222.1| DNA ligase, NAD-dependent [Staphylococcus aureus A10102]
 gi|282763058|gb|EFC03190.1| DNA ligase, NAD-dependent [Staphylococcus aureus A8117]
 gi|285817585|gb|ADC38072.1| DNA ligase [Staphylococcus aureus 04-02981]
 gi|294967860|gb|EFG43890.1| DNA ligase [Staphylococcus aureus A8819]
 gi|297176897|gb|EFH36154.1| DNA ligase [Staphylococcus aureus A8796]
 gi|312830277|emb|CBX35119.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315129286|gb|EFT85280.1| DNA ligase [Staphylococcus aureus subsp. aureus CGS03]
 gi|329724802|gb|EGG61306.1| DNA ligase (NAD+) [Staphylococcus aureus subsp. aureus 21172]
          Length = 667

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/715 (33%), Positives = 374/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFKKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  +   +   +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L             +   G   V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +                     L+ +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      ++ L  +    I +  K        E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|188997338|ref|YP_001931589.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium sp. YO3AOP1]
 gi|254781435|sp|B2V5U1|DNLJ_SULSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|188932405|gb|ACD67035.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 704

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 255/730 (34%), Positives = 394/730 (53%), Gaps = 57/730 (7%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +  + L+ E+A+K +  L + I +HD  YY  ++P+I D EYD L +    I   +P+L 
Sbjct: 20  LDAKKLTKEEAKKIVEDLREVIRFHDWRYYVLAQPVISDYEYDKLFKLLKDIEGKYPELI 79

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+ P  ++  E+     +V H  P LSL+  +N  DLR F  R+         + +
Sbjct: 80  ---TPDSPTQRVPSEITKVFPQVKHLTPMLSLDNSYNEADLRDFDRRVRELTGL---DKV 133

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-- 184
            +++EPK DG  I++ YEK  FV  A RGDG  GE+++  ++ I TIP     +   I  
Sbjct: 134 EYSVEPKFDGAGISLIYEKDLFVRGATRGDGEVGEEITNNLKVIKTIPLSAKFSQYGIDK 193

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL 243
           +E+RGEV I K+ F  +N+E +  G   +ANPRNAA+G +R  +P++   R L  FV+ +
Sbjct: 194 VEIRGEVLIRKDLFKKMNEERLEEGLPLFANPRNAAAGSIRLQDPSEVAKRNLEAFVYQI 253

Query: 244 GKTSEI-------FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTL 295
               +          K   + ++ +  LGF      ++       ++ Y  E +  R   
Sbjct: 254 TYAEKDGKNLLGTVLKKHSDNIKMLHELGFKTPYPVMKVCIGIEEVIQYCEEWQRKRDAY 313

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           PY+IDG+V KV++ SL  +LG  +  PRW I+ KF  +QA+T+++++  Q+GRTG +TPV
Sbjct: 314 PYEIDGMVIKVNDISLYDKLGFTSHHPRWAIAFKFKARQATTKIINVVFQVGRTGAITPV 373

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A+LEPV IGG ++++ +L NED+I+            +DIR+GD VLV+RAG+VIP VV 
Sbjct: 374 AKLEPVEIGGVIVSSVSLINEDFIR-----------EKDIRIGDTVLVERAGDVIPYVVM 422

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           +I   R  + +P  FP  CP C S +V+          A +RC   + C AQ +ERL HF
Sbjct: 423 VIKEARTGNEKPIEFPKTCPSCGSPIVKPPGE------AVYRCVN-INCPAQVIERLIHF 475

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
            S+DA +I+GL +  +  F+  +     +R   DI+ L          I+NI GFG  SV
Sbjct: 476 ASKDAMDIKGLSEATIRKFYNLK----LVRTIPDIYRL------DYNLIKNIPGFGPKSV 525

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            NL ++I + +   L R I+ LGIR+VG   A++LA       +            N   
Sbjct: 526 ENLKNAIEESKKRPLYRLIYGLGIRYVGEVTAKTLASAVRCIDDL----------KNFTI 575

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
             L+++P +G  +A  I  F+ N  N+  +E L +E+       E+    ++     VFT
Sbjct: 576 TDLMKLPDIGYKVASEIYNFFHNQENLKMIEEL-RELRVKTCHEEEEKKGKLAGLNFVFT 634

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQF 714
           GTL+   R KA+E V  LG  V   +S+K   ++VG+ PGSKL+KAQ+LG VKI+NEE+F
Sbjct: 635 GTLKCCSREKAKEIVESLGGNVLDTVSKKVHYLVVGEEPGSKLQKAQKLGTVKIINEEEF 694

Query: 715 LFLLQQYNTT 724
           L L+   NT 
Sbjct: 695 LKLIGGENTE 704


>gi|116628243|ref|YP_820862.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus LMD-9]
 gi|116101520|gb|ABJ66666.1| NAD-dependent DNA ligase [Streptococcus thermophilus LMD-9]
          Length = 648

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 218/700 (31%), Positives = 358/700 (51%), Gaps = 55/700 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L  +++ +   YY    P + D+EYD L R    +    P+L ++   + P +++GG
Sbjct: 1   MKELVDKLNQYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQA---DSPTHRVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
            +     K  H  P  SL+  ++ E+L  F  RI       +  +  +  E KIDG  I+
Sbjct: 58  LVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRIK-----SEFPNADYMAELKIDGLSIS 112

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y  G     A RGDG  GE+++  ++ I  IP  L L+ P  I VRGE Y+ + +F  
Sbjct: 113 LTYVDGILQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAEFER 170

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVHGLGKTSEIFAKGQYEML 258
           +N +    G   +ANPRNAA+G LR+L+   +       FF    G T  +    Q ++L
Sbjct: 171 INTQRQENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFFYQEAGPTERLT---QNDVL 227

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++  LGF VN      ++   I  +   +   R  L YDIDG+V KV+  ++Q++LG  
Sbjct: 228 NEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDHLAYDIDGVVIKVNSLAMQEELGFT 287

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++PRW I++KF  ++   +LL +D Q+GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 288 VKAPRWAIAYKFPAEEKEAKLLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 347

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR+GD V+V +AG++IP V+ ++ ++R         PS CP C 
Sbjct: 348 I-----------TEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQE-AMPVPSQCPSCG 395

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC    +C AQ  E L HF SRDA NI G+G   ++  FK+E
Sbjct: 396 SGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNISGMGPSVVEKLFKAE 448

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                ++  ADI+ L  +          + GF + S   LY +I   +  S E+ ++ LG
Sbjct: 449 ----LVKEVADIYGLNSQDF------LQLEGFKEKSAEKLYAAIQASKENSAEKLLYGLG 498

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVGA++++ L + + + +  A            D  ++  V  +G++IA++I  ++  
Sbjct: 499 IRHVGAKVSKQLLESFGTIKELASA----------DVQAIAAVDGLGEVIAKSIQRYFAK 548

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
                 ++ L            +    + +  K +V TG L+ ++R +A+  +  LGA V
Sbjct: 549 EEAQVLLKELESYGVNLSYLGQKVTDDAILSGKTVVLTGKLEHLKRSEAKAKLEALGAKV 608

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++ G + GSKLEKAQ LG+++ +E   L L
Sbjct: 609 TGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 648


>gi|282919739|ref|ZP_06327471.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           C427]
 gi|282316377|gb|EFB46754.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           C427]
          Length = 667

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/715 (33%), Positives = 375/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEFKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  +   +   +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKDPLN--VEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + +   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L             +   G   V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +                     L+ +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      ++ L  +    I +  K        E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++IVG++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLASQGAKVTSSVTKNTDVVIVGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|253729682|ref|ZP_04863847.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253726568|gb|EES95297.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 667

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/715 (33%), Positives = 375/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  +   +   +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L             +   G   V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G ++++ LA+ Y +                     L+ +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKVSQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      ++ L  +    I +  K        E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|86608809|ref|YP_477571.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123724461|sp|Q2JLU3|DNLJ_SYNJB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|86557351|gb|ABD02308.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 686

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 229/705 (32%), Positives = 368/705 (52%), Gaps = 56/705 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  +    L   +      YY +  PI+ DS YD L R    +  A+P+L     P+ P 
Sbjct: 4   KLEERARELRTLLQKASIAYYVHDAPILEDSVYDRLYRELQELERAYPELV---TPDSPT 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD------DNSIFFT 129
            ++G +       V H IP  SLE  +N E+L ++  R+ R   +        +  + + 
Sbjct: 61  QRVGEKPAEHFPTVFHRIPLYSLENAFNPEELEEWQERLLRVLGRAPVPDSRTEGELEYV 120

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVR 188
            E KIDG  + + Y +G     A RGDG +GED++  +RAI +IP    + + P ++EVR
Sbjct: 121 CELKIDGAALALTYIEGLLERGATRGDGQAGEDITPNVRAIRSIPLRLATADPPPVLEVR 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL---- 243
           GEVY++  +F  +N E  + G  P+ANPRN A+G LR+L+      R L+FF + L    
Sbjct: 181 GEVYLALAEFERINQERRSAGDPPFANPRNCAAGTLRQLDSRVVAARKLSFFAYALHWPE 240

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G  +    + Q++ LQ+++ LGFPVN   +       ++ +Y   +  +   PY  DG+V
Sbjct: 241 GWPAGDPPQTQWQCLQQLKELGFPVNPLSQVCRGLGEVIQFYERWRGAQL--PYASDGVV 298

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K++   LQ++ G   + PRW I+ K+  ++  TR+  I   +GRTG +TPVA LEPV +
Sbjct: 299 VKLNSLRLQEEAGFTQKFPRWAIALKYPAQEVPTRIRAIVASVGRTGAVTPVAELEPVPL 358

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G L++ A+LHN D ++ L           D+ +GD  +V++AGE+IP+VV I+   R  
Sbjct: 359 AGTLVSRASLHNADRLREL-----------DVHIGDTAIVRKAGEIIPEVVGILKELRPA 407

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DA P+S PS CP C + +VR          A  RC     C A+   +L+H+ SRDA +I
Sbjct: 408 DAVPYSLPSQCPECHTPLVRPPGE------AVTRCPNP-ECPAKLRGQLQHWASRDALDI 460

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG+++     +S      +R  AD++ L   Q         + G G  S   L  +I 
Sbjct: 461 EGLGEKRAAQLVES----LGVRTVADLYRLTPEQLQG------LEGMGSRSSQKLVQAIQ 510

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + R    ER ++ LGI HVG   A+ LA ++ + +  AQ              ++ ++  
Sbjct: 511 RSRQQPWERVLYGLGIPHVGVVTAQILAGHFPTPELLAQA----------SAETIAQIYG 560

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQ 662
           +G  +A+A+V ++  P +   ++ L     P++ + E   VS  +  KK V TGTL  + 
Sbjct: 561 IGAEVAEAVVAWFAEPAHRRLLQELQALGIPALPQQENPAVSQILAGKKFVITGTLPTLS 620

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
           R +A+ ++   G  V+A +SR+TD ++VG +PGSKLE+AQQLG+ 
Sbjct: 621 RQQAKAWIESRGGKVTASVSRQTDYVVVGSDPGSKLEQAQQLGIP 665


>gi|312278868|gb|ADQ63525.1| DNA ligase [Streptococcus thermophilus ND03]
          Length = 648

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 218/700 (31%), Positives = 358/700 (51%), Gaps = 55/700 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L  +++ +   YY    P + D+EYD L R    +    P+L ++   + P +++GG
Sbjct: 1   MKELVDKLNQYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQA---DSPTHRVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
            +     K  H  P  SL+  ++ E+L  F  RI       +  +  +  E KIDG  I+
Sbjct: 58  LVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRIK-----SEFPNADYMAELKIDGLSIS 112

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y  G     A RGDG  GE+++  ++ I  IP  L L+ P  I VRGE Y+ + +F  
Sbjct: 113 LTYVDGILQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAEFER 170

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVHGLGKTSEIFAKGQYEML 258
           +N +    G   +ANPRNAA+G LR+L+   +       FF    G T  +    Q ++L
Sbjct: 171 INTQRQENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFFYQEAGPTERLT---QNDVL 227

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++  LGF VN      ++   I  +   +   R  L YDIDG+V KV+  ++Q++LG  
Sbjct: 228 NEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDHLAYDIDGVVIKVNSLAMQEELGFT 287

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++PRW I++KF  ++   +LL +D Q+GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 288 VKAPRWAIAYKFPAEEKEAKLLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 347

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR+GD V+V +AG++IP V+ ++ ++R         PS CP C 
Sbjct: 348 I-----------TEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQE-AMPVPSQCPSCG 395

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC    +C AQ  E L HF SRDA NI G+G   ++  FK+E
Sbjct: 396 SGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNISGMGPSVVEKLFKAE 448

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                ++  ADI+ L  +          + GF + S   LY +I   +  S E+ ++ LG
Sbjct: 449 ----LVKEVADIYGLNSQDF------LQLEGFKEKSAEKLYAAIQASKENSAEKLLYGLG 498

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVGA++++ L + + + +  A            D  ++  V  +G++IA++I  ++  
Sbjct: 499 IRHVGAKVSKQLLESFGTIKELASA----------DVQAIAAVDGLGEVIAKSIQRYFAK 548

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
                 ++ L            +    + +  K +V TG L+ ++R +A+  +  LGA V
Sbjct: 549 EEAQVLLKELESYGVNLSYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAKLEALGAKV 608

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++ G + GSKLEKAQ LG+++ +E   L L
Sbjct: 609 TGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 648


>gi|323341293|ref|ZP_08081538.1| NAD-dependent DNA ligase LigA [Lactobacillus ruminis ATCC 25644]
 gi|323091287|gb|EFZ33914.1| NAD-dependent DNA ligase LigA [Lactobacillus ruminis ATCC 25644]
          Length = 671

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 227/718 (31%), Positives = 386/718 (53%), Gaps = 55/718 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E+A+KEL SL ++++     YY    P + D  YD   +R   +   FP+L      
Sbjct: 1   MDKEEAKKELESLREKLTKWSREYYVLDAPTVEDHVYDENYKRLLELEAKFPELV---TK 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++  +  KV H IP LSL  +++ E+L  F+ R      +       +  E
Sbjct: 58  DSPSQRVGGKILTNFTKVEHEIPMLSLGDVFSKEELADFVKR----LNENAGADFGYNCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE G FV  + RG+G  GED++  ++ I  +P  L+  I   +EVRGE 
Sbjct: 114 LKIDGLAISLTYEDGIFVKGSTRGNGTIGEDITENLKTINAVPLKLNEKIS--VEVRGEC 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN +  A G+  +ANPRNAA+G LR+L+      R L+ F++ L +  +  
Sbjct: 172 YMPKKSFVDLNKKREAEGQPVFANPRNAAAGSLRQLDSKITAERNLSIFIYYLMEPEKFG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q E L+KM   GF VN   R  +T   I +Y +E ++ R+ L YDIDG+V K + F+
Sbjct: 232 VKTQSEALKKMASWGFRVNGESRVCSTMDEIDAYLDEYQAKRAGLEYDIDGIVLKAEPFT 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           + + +G   + PRW I++KF   +  T + DI+  +GRTG++TP A ++PV + G  ++ 
Sbjct: 292 VHELVGNTVKVPRWAIAYKFPPDEQETIVRDIEWTVGRTGVVTPTAVMDPVLLAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN DY+             + IR+ D V + +AG++IP++ ++++ +R  D++P+  
Sbjct: 352 ASLHNPDYL-----------NEKGIRLLDTVKLHKAGDIIPEISEVVLEKRPEDSKPYEI 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C +++V   +       AA RC     C A   E L HF S++A NI+GLG + 
Sbjct: 401 PTNCPECDAKLVHLDDE------AALRCINPK-CKALMKESLTHFASKNAMNIDGLGPKI 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  F+       I   +D++        +   +  +  F + S +NL ++I+  R  SL
Sbjct: 454 IEQLFER----GMINDVSDLYK------LTFDDLLLLDKFKEKSASNLLNAIDASRKNSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F LGIRHVGA+ A+ LA+ +++    A+               ++ +  +G+ IA 
Sbjct: 504 ERLLFGLGIRHVGAKAAKLLAERFMTMDALAKASK----------EEIVAIETMGETIAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPS-------IGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           ++  ++ +      +E L                  E    S      +V TGTL++++R
Sbjct: 554 SLSTYFNSEGANELLEELKSVGVNMSYLGKTAAELEEAASGSAFNGLTVVLTGTLERLKR 613

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
             A++++ + GA V+  +++KT+++I G + GSKL KA++LG KIMNEE+FL  +++ 
Sbjct: 614 SDAKKWLEEHGAKVTGSVTKKTNLLICGHDAGSKLTKAKELGTKIMNEEEFLQKMEEK 671


>gi|282917251|ref|ZP_06325006.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           D139]
 gi|283771054|ref|ZP_06343945.1| DNA ligase [Staphylococcus aureus subsp. aureus H19]
 gi|282318878|gb|EFB49233.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           D139]
 gi|283459648|gb|EFC06739.1| DNA ligase [Staphylococcus aureus subsp. aureus H19]
          Length = 667

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 241/715 (33%), Positives = 375/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELINIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  +  ++   +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKESLN--VEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +++E     I+  ADIF L             +   G   V NL  +I + ++ SLE 
Sbjct: 453 QLYQNE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +                     L+ +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      ++ L  +    I +  K        E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|82751560|ref|YP_417301.1| DNA ligase [Staphylococcus aureus RF122]
 gi|123754599|sp|Q2YU70|DNLJ_STAAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|82657091|emb|CAI81528.1| DNA ligase [Staphylococcus aureus RF122]
          Length = 667

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 241/715 (33%), Positives = 373/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  +   +   +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R   A  +  P+
Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEGAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L             +   G   V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +                     L+ +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      ++ L  +    I +  K        E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|282861257|ref|ZP_06270322.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE]
 gi|282563915|gb|EFB69452.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE]
          Length = 732

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 213/741 (28%), Positives = 351/741 (47%), Gaps = 61/741 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR+  + L ++I  H   YY   +P++ D+E+D L R  +A+    P L     P+ P
Sbjct: 15  AEARERHALLSEQIEEHRFRYYVKDQPVVSDAEFDRLMRELEAVEDENPQL---RTPDSP 71

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K+ G        V H    LSL+  ++ E+L  +  R+ +   +   +   F  E K+
Sbjct: 72  TQKVAGPYTTEFTSVEHRERMLSLDNAFDDEELAAWAERVAKDVGRPGYH---FLCELKV 128

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193
           DG  + + YE G+   AA RGDG +GED++  IR I  IP  L+ +  P ++E+RGEVY 
Sbjct: 129 DGLAVNLTYEHGRLTRAATRGDGRTGEDITPNIRTIAEIPHRLTGDRVPALVEIRGEVYF 188

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
               F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G    +   
Sbjct: 189 PMEAFEGLNARLVEAGDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREGLDID 248

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              +    +R  G P     +  ++  G+  +       R ++ ++IDG+V K+DE  LQ
Sbjct: 249 RLSQAYDLLRDWGLPTARHNKVVDSLDGVREFVRYFGENRHSVEHEIDGVVVKLDEIPLQ 308

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG  +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++E V + G+ +  AT
Sbjct: 309 GRLGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEAVEVAGSEVEFAT 368

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN++ +K            + + +GD V++++AG+VIP+++  +V+ R    + F  P+
Sbjct: 369 LHNQNVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPA 417

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG----- 487
            CP C + +         +     RC    +C AQ  ER+ +   R   +I+  G     
Sbjct: 418 ECPECGTPLRPM-----KEGDVDLRCPNARSCPAQLRERVAYLAGRKCLDIDHFGYVAAA 472

Query: 488 -------------KQQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTK-----IENI 527
                        + + D F  + D    IR         L RR   +  +       N 
Sbjct: 473 ALTQPLEPSEPPLRDEGDLFSLTIDQLLPIRAYVLDPDSGLPRRDPKTGEEKIATVFANQ 532

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
            G    +   L D I   +   L R +  L IRHVG   A  LA+ + S     +     
Sbjct: 533 QGEPKKNALALLDGIAAAKQAPLARILTGLSIRHVGPVAAVELARQFRSVDRIDEASEAE 592

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSS 645
           +A              VG IIA ++ +++    +   +    +           E     
Sbjct: 593 LAAA----------DGVGSIIAASVKQWFAEDWHREILRKWREAGVRMEDEGAGEDEGPR 642

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +E   +V TGTL    R  A++ +  LGA V+  +S+KT  ++VG+NPGSK +KA QL 
Sbjct: 643 PLEGLTVVVTGTLASHTRDGAKDALQSLGAKVTGSVSKKTSFVVVGENPGSKYDKAMQLK 702

Query: 706 VKIMNEEQFLFLLQQYNTTLR 726
           V +++E  F  LL +     R
Sbjct: 703 VPVLDEAGFAVLLDEGPDAAR 723


>gi|283471175|emb|CAQ50386.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 667

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/715 (33%), Positives = 375/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  +   +   +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + +   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L             +   G   V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +                     L+ +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      ++ L  +    I +  K        E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKYKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++T  GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLTSQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|167631047|ref|YP_001681546.1| DNA ligase, nad-dependent [Heliobacterium modesticaldum Ice1]
 gi|254781344|sp|B0TDL0|DNLJ_HELMI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|167593787|gb|ABZ85535.1| DNA ligase, nad-dependent [Heliobacterium modesticaldum Ice1]
          Length = 675

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 243/719 (33%), Positives = 372/719 (51%), Gaps = 66/719 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
              A + ++ L ++I  HD CYY    P I D+EYD L R    +  + P+L  +   + 
Sbjct: 10  PADAAQRIAELREQIRRHDYCYYVLDAPEISDAEYDRLMRELLDLEQSHPELVTA---DS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG+   +   V+H +P LSL    + +DLR+F     R  +++ D  + + +EPK
Sbjct: 67  PSQRVGGQPLAAFRAVSHRVPLLSLANAVDDQDLREF----DRRARERADRPLTYVVEPK 122

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  + + YE+G+F+ AA RGDG  GED++  I+ +  +P  L     + +EVRGE Y+
Sbjct: 123 IDGLTVVLSYEEGRFIRAATRGDGLIGEDITENIKTVRAVPLRL-KRDIKSLEVRGEAYL 181

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-A 251
            K  F  LN+E    G   +ANPRNAA+G LR+L+P    +R L  + + +         
Sbjct: 182 PKAAFARLNEEREEAGEAAFANPRNAAAGSLRQLDPKVTASRPLRAYFYNILHLEGADGV 241

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E LQ +  LG PVN   R   T   ++ Y       R  LPY+IDG+V KV+E   
Sbjct: 242 GEQVEALQMLEDLGLPVNPERRYCRTIDDVIDYCRYWTEHRHDLPYEIDGMVVKVNELDQ 301

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
              LGE A+SPR+ I+ KF  +QA TR+ DI +++GRTG++TP A LEPV + G  ++ A
Sbjct: 302 YPLLGETAKSPRYAIAFKFPPEQAITRVRDITVKVGRTGVITPTAELEPVRLAGTTVSRA 361

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNED I+            RDI +GD V++++AG++IP+V+ ++  +R  + +PF  P
Sbjct: 362 TLHNEDIIR-----------ERDIHIGDYVVIQKAGDIIPEVLSVLKEKRTGEERPFFMP 410

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C S V R          AA RCT  LAC AQ  E L HF SRDA NIEGLG   +
Sbjct: 411 QTCPECHSPVSRLKGE------AAIRCTS-LACPAQAKEGLIHFASRDAMNIEGLGPAVV 463

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  ++    A  +R PAD++ L   Q         +   G  S  NL  +I   ++  L 
Sbjct: 464 NLLWE----AGLVRDPADLYDLTAEQV------APLERMGKKSAANLIAAIENSKSRGLA 513

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             IF+LGIR VG   A++LA+++ S     +               L  V  +G  +A++
Sbjct: 514 ALIFALGIRLVGQTAAKTLARHFGSMDQLMKATT----------EELQAVSEIGPKMAES 563

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKI-------- 661
           +  ++  P N   ++ L ++             V      K          +        
Sbjct: 564 LQRWFAVPANRQMIDRLAEKGLQMETEKAGDAGVPQTFAGK--------TVVLTGTLTTL 615

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            R +AQ  + + GA V++ +S+KT ++I G+  GSKLEKA++L + I++E  FL L+ +
Sbjct: 616 DRREAQRLLEERGAKVASSVSKKTSLVIAGEAAGSKLEKAKELNIPILSEADFLQLIDR 674


>gi|221195651|ref|ZP_03568705.1| DNA ligase, NAD-dependent [Atopobium rimae ATCC 49626]
 gi|221184417|gb|EEE16810.1| DNA ligase, NAD-dependent [Atopobium rimae ATCC 49626]
          Length = 706

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 224/730 (30%), Positives = 357/730 (48%), Gaps = 53/730 (7%)

Query: 12  LSIEQA--RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +S  +   R   + L + +++    YY    P + D+E+D L      I  A P+L    
Sbjct: 1   MSEAEKSFRSRAAELNRILNHAAYAYYALDAPELTDAEFDRLLVELQGIEAAHPELIV-- 58

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P     ++GG ++     VTH+    S++   N+E+L  ++ R          + + +T
Sbjct: 59  -PESYTQRVGGYVSEQFEPVTHAARMYSIDDAMNLEELDAWLARTDEALGASKTHPVAYT 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---------LSLN 180
            E KIDG  I + Y +G+ V  A RGDG +GE+V+A    I  IPR              
Sbjct: 118 CELKIDGLGIALTYTEGQLVRGATRGDGATGENVTANALTIKDIPRALAPAGLARLRDEG 177

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
               +EVRGEVY+ K+ F+ LN++  A G++P+ANPRNAA+G LR+ +P     R L  F
Sbjct: 178 AHLSLEVRGEVYMPKHSFVRLNEDADAAGKQPFANPRNAAAGSLRQKDPKVTAHRDLETF 237

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++ +   + +    Q++ L  +R  GF VN    +  +   +  +       RS L YDI
Sbjct: 238 MYAIADEAPLQVDSQWKFLSWLRDCGFSVNTHAARCVSAQEVHDFCKRALEERSELDYDI 297

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KVD F+ Q++LG  +R+PRW I+ KF  ++  T L +I IQ+GRTG+LTPVA  +
Sbjct: 298 DGVVVKVDSFAYQEELGFTSRAPRWAIAFKFPPEEKQTVLREIRIQVGRTGVLTPVAEFD 357

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G+ I  ATLHN D +             +++R GD ++V +AG+VIP+VV  ++ 
Sbjct: 358 PVVVAGSTIARATLHNIDEVHR-----------KNVREGDTIIVHKAGDVIPEVVRPVLE 406

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  +++PF  P+ CP C S VV++      +          + C AQ  ERL H+ SR 
Sbjct: 407 KRPLNSKPFMMPTVCPSCGSPVVKEEGEVAYR-------CVSIDCPAQATERLIHWGSRK 459

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPA-----DIFTLQRRQQTSTTKIENILGFGD-- 532
           A +I+GLG++ ++    +   +            DI  L   +   T    ++ G     
Sbjct: 460 AMDIDGLGEELVNKLVANGILSDVADFYDKLTVSDIAELPTGRFYETDTDGHLSGDPIPT 519

Query: 533 --VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
                  +   I + +   L R +F +GIRHVGA +A  LA+Y+ S Q            
Sbjct: 520 GLTIAEKIMTQIQESKTRGLARVLFGIGIRHVGANMAALLAQYFHSIQELQLATE----- 574

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIEN 649
                  +  +  VG  +A++I EF+  P NI  +E L             +     +  
Sbjct: 575 -----EQMAAISGVGPKMAKSIKEFFLIPENIAVLERLRVAGVVMEEADATSDKPQTLSG 629

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
              V TGTL+   R +A   + + GA VS  +S+KT  ++ G+  GSKL KA  LGV ++
Sbjct: 630 LTFVLTGTLEHYTRDEAGALLKERGAKVSGSVSKKTSFVVAGEAAGSKLTKAVSLGVPVL 689

Query: 710 NEEQFLFLLQ 719
           +E     +L+
Sbjct: 690 SEADLERILE 699


>gi|258421012|ref|ZP_05683943.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9719]
 gi|257842960|gb|EEV67378.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9719]
          Length = 667

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/715 (33%), Positives = 374/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFKKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVGYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  +   +   +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L             +   G   V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +                     L+ +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      ++ L  +    I +  K        E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|319902123|ref|YP_004161851.1| DNA ligase, NAD-dependent [Bacteroides helcogenes P 36-108]
 gi|319417154|gb|ADV44265.1| DNA ligase, NAD-dependent [Bacteroides helcogenes P 36-108]
          Length = 665

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 221/706 (31%), Positives = 361/706 (51%), Gaps = 48/706 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A++++  L  ++  H+  YY  + P I D E+D++ R    +   +P+    +D + P  
Sbjct: 3   AKEKIDQLRADLHRHNYNYYVLNAPEISDKEFDSMMRDLQNLEKEYPEY---QDNSSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +      +       E K DG
Sbjct: 60  RVGSDLNKNFTQVMHKYPMLSLGNTYSENEVTDFYDRVKQSL----NEDFEICCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE GK V A  RGDG  G+DV+  ++ I TIP +L  N P++ E+RGE+ +   
Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLLLHGNYPKLFEIRGEILMPWK 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F ALN+E  A     +ANPRNAASG L+  N   +               E+   G YE
Sbjct: 176 SFEALNNEREAREETLFANPRNAASGTLKLQNSAVVASRKLDAYLYYLLGEELPCNGHYE 235

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ     GF ++  +++ ++   I  Y +   + R  L    DG+V KV+    QK LG
Sbjct: 236 NLQMAASWGFKISEHMKKVHSLEEIFEYISFWDTERKNLSVATDGIVLKVNSLKQQKNLG 295

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN 
Sbjct: 296 FTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGTITPVANLDPVQLSGTVVKRASLHNA 355

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435
           D I+GL           D+ +GD V V++ GE+IPK+  +    R     +   F + CP
Sbjct: 356 DIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVNKEARGMLLGEKVKFITHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C SR++R          AAH C    AC  Q   +++HF+ R A +I+GLG + +D F+
Sbjct: 405 ECGSRLIRYEGE------AAHYCPNETACPPQIKGKIEHFICRKAMDIDGLGPETVDTFY 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I+  AD++ L+            +   G+ S  N+ + I   + +  ER +F
Sbjct: 459 R----LGLIKDAADLYNLKADDIKG------LDRMGEKSAENIINGITASKEVPFERVLF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ +AK ++  +  A            +   LI +  +G+ IA++IV +
Sbjct: 509 ALGIRFVGETVAKRIAKSFIDIEELANA----------NLEVLINIDEIGEKIAKSIVTY 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           + NP N   VE L         + E     +  +  + +V +G      R + +  + + 
Sbjct: 559 FCNPSNRKLVERLKDAGLQLFQKEEDLNEYTDRLAGQSIVISGVFTHHSRDEYKILIEKN 618

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           G   +  +S KT+ I+ G+N G +KLEKA++LG+KIMNE++FL L+
Sbjct: 619 GGKNTGSISAKTNFILAGENMGPAKLEKARKLGIKIMNEDEFLALI 664


>gi|241889713|ref|ZP_04777011.1| DNA ligase, NAD-dependent [Gemella haemolysans ATCC 10379]
 gi|241863335|gb|EER67719.1| DNA ligase, NAD-dependent [Gemella haemolysans ATCC 10379]
          Length = 663

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 230/708 (32%), Positives = 370/708 (52%), Gaps = 48/708 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++Q ++E+  L   ++ +   YY    P I D+EYD L ++ + +   +P+L      N 
Sbjct: 1   MKQIQEEILKLVSLLNKYSYEYYVEDNPQITDTEYDTLYKQLEKLEEKYPELILE---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G  +     K+TH IP LSL   ++ EDL  F  R+ +        ++ +  E K
Sbjct: 58  PTQRVGDRVLDEFEKITHKIPMLSLSNTFSTEDLIDFDARVSKLV---PSENVEYICELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I+I Y+ GK V AA RGDG  GEDV+  I+ I +IP+VL        EVRGEVY+
Sbjct: 115 IDGLAISINYDNGKLVSAATRGDGTVGEDVTENIKTIFSIPKVLKDKRS--FEVRGEVYL 172

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            K  F  LN E        +ANPRNAA+G LR+L+                   +     
Sbjct: 173 PKKSFNILNKEREENNEVLFANPRNAAAGSLRQLDSKIT-AKRRLSAFIYSIVGDDSIVS 231

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q   L   +    PVN   +   +   ++ Y N     +  LPYDIDG+V KV+ + +Q+
Sbjct: 232 QENALNTAKEYELPVNPNFKLCKSIDEVIDYINYWTEHKQDLPYDIDGIVIKVNSYKVQE 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           Q+G   +SPRW  ++KF E++ +T+LLD+++ +GRTGI+TPVA L+P+ I G+ ++ A+L
Sbjct: 292 QIGFTQKSPRWATAYKFPEEELATKLLDVELSVGRTGIITPVAILDPIVISGSTVSKASL 351

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+D I  LD                 V+VK+AGE+IPKVV ++   R   +  +  PS 
Sbjct: 352 HNKDIIDDLDIHIGD-----------MVVVKKAGEIIPKVVRVVKELRTEGSTKYQMPSN 400

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C        N    +            C  Q + ++ HF SRDA NIEGLG + +  
Sbjct: 401 CPSCHQETYVKDNDPFTR-------CKNPDCPDQNIRKIIHFASRDALNIEGLGDKVVAT 453

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            +        I    D+++L R +  +      +   G+ SV NL ++I K +  SL++ 
Sbjct: 454 LYDK----GIICHTIDLYSLDRDKLIA------LERMGEKSVDNLLNAIEKSKESSLDKV 503

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGI +VG +  + LA+ Y++  NF                 LI +  VG I A++I+
Sbjct: 504 IYALGILNVGKKAGKILAEKYVNLSNFMNAT----------LEELINLDDVGQITAESIL 553

Query: 614 EFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++  +  NI  +  L+    +P    +E   ++    K +V TG L ++ R++A+E++ +
Sbjct: 554 DYLSDDNNIKFINDLINIGMNPQYEINEIKSNNIFSGKTVVLTGKLVELTRNEAKEFLEK 613

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            GA V+  ++ KTD++I G+  GSKL KA+QLG++++NEEQF  ++++
Sbjct: 614 NGAKVTGSVTSKTDLVIAGEKAGSKLTKAEQLGIEVINEEQFANMVRE 661


>gi|300813135|ref|ZP_07093512.1| DNA ligase (NAD(+)) [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300495889|gb|EFK31034.1| DNA ligase (NAD(+)) [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 671

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 209/714 (29%), Positives = 358/714 (50%), Gaps = 49/714 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S+E+A++E+  L  ++      YY+   P++ D  YD    R   +  A+P+L      +
Sbjct: 4   SLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDKKYARLLELEAAYPELK---SAD 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
               ++GGE+N  L KV H +P LS+  +++ E+L +F  R+ +       + + + +E 
Sbjct: 61  SITQRVGGEVNSDLPKVEHPVPMLSMGDVFSKEELAEFDQRVQKAIG----HPVAYNVEL 116

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  +++ YE+G+   A+ RG+G  GEDV+  ++ I  +P+ L   I    EVRGE Y
Sbjct: 117 KIDGLSLSLEYEEGRLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGECY 174

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +SK  F  LN E    G   +ANPRNAA+G LR+L+P    +                  
Sbjct: 175 MSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAGID 234

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q++ + +M  LGF  N   R+      +  Y +E    R +LPY IDG+V KVD+ +LQ
Sbjct: 235 SQHQAIGEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDDLALQ 294

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G  +  A+
Sbjct: 295 ADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVQLAGTTVARAS 354

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D +  L           DIR+GD V + +AG++IP++ ++++++R  D+ P+  P+
Sbjct: 355 LHNPDLLAKL-----------DIRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPYEVPT 403

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +V            A RC    +C AQ  E + HF SR A NI GLG + + 
Sbjct: 404 KCPSCGEDLVHLDKE------VALRCINP-SCPAQVEEGITHFASRQAMNIAGLGPKIVK 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                +     +   AD++ L     +       +  F + S+ NL  +I++ R  S+E 
Sbjct: 457 QLIAKD----LVHNVADLYYLTADDLS------QLDHFKEKSINNLLAAIDQSRKNSVEL 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGI +VG + A+ +A+ + +    A                L  +  +G  IA+++
Sbjct: 507 VLFGLGIDNVGGKAAQLIARKFKNMSKIASA----------SVQELTAIDTIGMTIAESL 556

Query: 613 VEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
             ++Q       +  L +        G   +   +  + K +V TG L    R +  + +
Sbjct: 557 TAYFQQEEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAEFTKKL 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             LGA V+  +S+KTD ++ G++ GSKL KA+ L +  + E + +  +++ +T 
Sbjct: 617 QALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDTE 670


>gi|161507068|ref|YP_001577022.1| DNA ligase [Lactobacillus helveticus DPC 4571]
 gi|190359262|sp|A8YTZ3|DNLJ_LACH4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160348057|gb|ABX26731.1| DNA ligase [Lactobacillus helveticus DPC 4571]
          Length = 668

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 214/715 (29%), Positives = 367/715 (51%), Gaps = 51/715 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +++++A+KE +SL  ++    D YY    P + D+ YD    R   +  AFP++   
Sbjct: 1   MAKITLDEAKKEAASLRTKLDEWADAYYSKDAPEVEDNVYDQSYNRLLELEKAFPEIV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GGE++    KV H IP LS+  +++ ++L++F  R+ +       + + +
Sbjct: 59  -TPDSITQRVGGEIDSDFTKVNHPIPMLSMGDVFSKDELKEFDQRMQKLVG----HPVEY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y+ GK V A+ RG+G+ GEDV+A  R I  IP+VL   +   IEVR
Sbjct: 114 NVELKIDGLSLSLEYQDGKLVRASTRGNGYIGEDVTANARYIADIPQVLPEPL--TIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+P    +              
Sbjct: 172 GECYMGKEAFAKLNQEREDEGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ +++M  LGF  N   R+      +  + +E  + R++L Y IDG+V KVD+
Sbjct: 232 REITSQHQAIERMHELGFHTNETGRKLANLDEVFDFIDEYTAKRNSLTYGIDGIVLKVDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SL++QLG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  +
Sbjct: 292 LSLEQQLGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN DY+             + +R+GD V + +AG++IP++ ++++++R  D+ P+
Sbjct: 352 ARASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLSKRPADSVPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG 
Sbjct: 401 EIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGIIHFASRPAMNIAGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +      +     +   AD++ L             +  F + S+ NL  +I+  +  
Sbjct: 454 KIVKQLIAKD----LVHNVADLYHLTEDDL------AQLDHFKEKSINNLLTAIDNSKKN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  I  LGI HVGA+ AR +A+ + + +                   +  +  +G   
Sbjct: 504 SVELLITGLGIDHVGAKAARLIAQKFKNLEKIMSL----------GVQDIASIDTIGMTT 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           A+++  ++  P     +E L +             E+   +  ++K +V TG L+   R 
Sbjct: 554 AESMTTYFAQPEAQKLIEELRESGLNMDYLGADEPEEAPDNPFKDKTVVLTGKLEHYTRS 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  + +  LGA V+  +S KTD +I G + GSK  KA+QLGV ++ EE+ +  ++
Sbjct: 614 EFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYNKAEQLGVPLLTEEEAIAQIE 668


>gi|291296053|ref|YP_003507451.1| DNA ligase NAD-dependent [Meiothermus ruber DSM 1279]
 gi|290471012|gb|ADD28431.1| DNA ligase, NAD-dependent [Meiothermus ruber DSM 1279]
          Length = 666

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 228/710 (32%), Positives = 359/710 (50%), Gaps = 52/710 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++ +  L + I YH+  YY   KP I D+EYD L +   A+  A P+L     P+ 
Sbjct: 1   MQTPKQRIMELRELIRYHNYRYYVLDKPEISDAEYDRLLQELRALEEAHPELII---PDS 57

Query: 74  PLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
           P   +G  +  +    V H     SL   ++ +D+  F   I RF  +++     + LE 
Sbjct: 58  PTQTVGSAILETPFTPVPHPTRMYSLGNAFSQDDIADFEASINRFLGREESR--EYVLEY 115

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  + + YE+G F     RGDG +GEDV+  + AIP IP    L  P  +EVRGE+Y
Sbjct: 116 KIDGLSVNLIYEEGVFRQGLTRGDGLTGEDVTPNLLAIPDIP--RQLPQPLDLEVRGEIY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251
           +    FL LN ++   G  P+ NPRNAA+G LR+ +P    +R L    +G+G+   +  
Sbjct: 174 LPIQTFLELNTQLEEAGEPPFKNPRNAAAGSLRQKDPRISASRGLRGLFYGVGRPESLGV 233

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E+L+K+  LGF V+   +      GI   Y  M + R +LP++ DG+  K++  SL
Sbjct: 234 GTQQELLEKLGQLGFSVDPHYQVVRGVEGIEQGYQAMLAARKSLPFEADGVTVKLNNLSL 293

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             +LG  A++PR+ I++KF  ++ +TR+L +  Q+GRTG +TPVA LEPV + G+ ++  
Sbjct: 294 WSELGYTAKTPRFAIAYKFPAEEKTTRVLRVIFQVGRTGRVTPVAELEPVFLDGSTVSRV 353

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNE Y++ L            +R+GD VLV ++G VIP+V+ ++       A P  +P
Sbjct: 354 TLHNESYVQEL-----------GLRIGDTVLVHKSGGVIPEVLRVVTEAPRGHA-PVEWP 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +              H C   L C A+  E ++HF SR A +I+GLG++ +
Sbjct: 402 THCPECGTAL--------ELSGKIHLCPNPL-CPAKAFEAIRHFASRRAMDIQGLGEKLI 452

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   ++      +R  AD++ L++    +      +    + S  NL + I   ++  LE
Sbjct: 453 EQLLET----GLVRDAADLYNLKKEDIAA------LERKAEKSAQNLIEQIEASKSRGLE 502

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +F+LGI  VG   AR+LAK +    +  +               L  VP + +  AQA
Sbjct: 503 RLLFALGIPQVGESTARALAKRFGHLDSILKAT----------VEELDAVPDIAETTAQA 552

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           I +    P     +E L           EK  S  +E    V TG L +  R +    + 
Sbjct: 553 IHQALARPEMQSFIERLRAAGLVF-EAREKQQSQALEGLTFVLTGELSR-PREEVARQLE 610

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
             GA +S  +SRKT  +I G   GSKL KA++LG+ I++E     LL+Q 
Sbjct: 611 AHGAKISGSVSRKTSYVIAGPGAGSKLSKAKELGIPILDEAGLRALLEQK 660


>gi|257436941|ref|ZP_05612983.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M876]
 gi|282914702|ref|ZP_06322487.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M899]
 gi|257283730|gb|EEV13855.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M876]
 gi|282321416|gb|EFB51742.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
           M899]
          Length = 667

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 240/715 (33%), Positives = 373/715 (52%), Gaps = 53/715 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEFKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +D RKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDFRKFDQRIREQIG-----NVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  +   +   +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + +   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+
Sbjct: 351 LHNEDLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++SE     I+  ADIF L             +   G   V NL  +I + ++ SLE 
Sbjct: 453 QLYQSE----LIKDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +                     L+ +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      ++ L  +    I +  K        E   K +V TG L ++ R++A +
Sbjct: 553 VTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASK 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 613 WLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 667


>gi|90408119|ref|ZP_01216289.1| DNA ligase [Psychromonas sp. CNPT3]
 gi|90310805|gb|EAS38920.1| DNA ligase [Psychromonas sp. CNPT3]
          Length = 667

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 249/709 (35%), Positives = 385/709 (54%), Gaps = 48/709 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              ++  L +++  ++  YY   +P I D++YDA+ ++  AI    P L      N P  
Sbjct: 3   IALQVKKLTEQLEEYNYQYYVLDEPSISDAQYDAVFQQLKAIESEHPHLLHE---NSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K+GG+      +V H +P LSL+ ++N E L+ FI R       K    + F +EPK+DG
Sbjct: 60  KVGGQALSKFEQVAHEMPMLSLDNMFNDEALQAFIQR----ASDKSIKEVAFCIEPKLDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISK 195
             ++I YE G  V AA RGDGH+GE+V+A ++ I  IP  L  +  P+ +EVRGEV++ +
Sbjct: 116 LAVSIIYEHGLLVQAATRGDGHTGENVTANVKTISNIPLRLRGDNIPQRLEVRGEVFMPQ 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAKGQ 254
             F  LN  + A+G K + NPRNAA+G LR+L+          F+ + +G         Q
Sbjct: 176 LGFDKLNARLEALGEKSFVNPRNAAAGSLRQLDSKIAASRPLAFYCYAVGVFDGDLENSQ 235

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           Y  +Q+++  G PV++ + +       ++YY  + + R +L Y IDG+VYKVD+  LQ +
Sbjct: 236 YARMQQLKGWGLPVSSEISRVQGLDACLAYYRNIVTQRESLGYAIDGVVYKVDDIDLQDK 295

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  AR+PRW  ++KFA ++A TR+ +++ Q+GRTG +TPVA+L PV +GG  ++NATLH
Sbjct: 296 LGFVARAPRWASAYKFAAEEAITRVENVEFQVGRTGAITPVAKLRPVFVGGVTVSNATLH 355

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPSF 433
           N+D I  L            I +GD V+V+RAG+VIP+V  +++  R     Q   FPS 
Sbjct: 356 NQDEIARL-----------GILIGDDVVVRRAGDVIPQVARVLLENRDLSQTQEIHFPSV 404

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S + R +        A  RCTGGL C+AQ+ E +KHF SR A +I+GLG + +  
Sbjct: 405 CPVCSSALERIVGE------ATIRCTGGLYCAAQRKEAIKHFASRKALDIDGLGNKLVAL 458

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               +     I+ PA +F L   Q ++      +   G VS   + +S+   +  +L RF
Sbjct: 459 LVDHD----LIKDPAQLFDLTLAQIST------LPRMGSVSAKKVLNSLQVSKKTTLSRF 508

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIR VG   A +LA +Y +                    +L  V  VGDI+A+ I 
Sbjct: 509 LYALGIREVGEATANNLAMHYKNLSALQDA----------GIEALKEVADVGDIVAKNIY 558

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            F++ P N+  V  LL+           ++ +  +  +  V TG+   I R   +  +  
Sbjct: 559 YFFRQPSNLQVVNRLLEAGVHWPDIQAVESTTQTLVGQTFVITGSFANISRSDIKSELQA 618

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           LGA VS  +S+KT+ +I G   GSKLEKAQ L + IM+E+Q   LL + 
Sbjct: 619 LGAKVSGSVSKKTNTLIAGTAAGSKLEKAQALDINIMDEQQLFTLLNKQ 667


>gi|326804258|ref|YP_004322076.1| DNA ligase (NAD+) [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651204|gb|AEA01387.1| DNA ligase (NAD+) [Aerococcus urinae ACS-120-V-Col10a]
          Length = 677

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 224/714 (31%), Positives = 377/714 (52%), Gaps = 53/714 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + +  ++ +++L  +++ +   YY   +P + D  YD   R+ + +  + PDL +S   +
Sbjct: 10  NQQAVQERMAALVDQLNQYAHEYYVLDQPSVSDDHYDKTYRQLEELEASHPDLIQS---D 66

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G  +N    KV    P LSL  +++ E+L  ++  + + +         F  E 
Sbjct: 67  SPTQRVGDVLNEKFDKVHFDQPMLSLGDVFSQEELMAWVGGVQKEFG----QDTEFVCEM 122

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  +++ Y+ G+ V  A RGDG++GE+++  I+ I +IP  L   +   +EVRGE+Y
Sbjct: 123 KIDGLSVSLLYQDGRLVRGATRGDGNTGENITNNIKTISSIPLRLQEPLS--VEVRGEIY 180

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           + K  F  LN++  A G   +ANPRN+A+G +R+L+P     R LN F++     ++   
Sbjct: 181 MPKASFAQLNEDREAAGLATFANPRNSAAGSVRQLDPKVTAKRNLNVFLYTGVLPADAGI 240

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E+L      G  VN   +  ++   I  Y  ++  IR  L YDIDG+V KV++F  
Sbjct: 241 NSQAELLTSYPQWGLRVNPEFKLTHSKEEIWDYVEKVSQIRHDLAYDIDGIVIKVNDFDQ 300

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG   ++PRW I++KF  +QA T + DI+  +GRTG++TP A ++PV + G+ +  A
Sbjct: 301 QEELGYTVKAPRWAIAYKFPAEQAKTTIRDIEWTVGRTGVVTPTAVMDPVLVAGSTVQRA 360

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN D I+            +DIR+ D+V++ +AG++IP+VV +I  ER  D+Q +  P
Sbjct: 361 SLHNMDLIR-----------AKDIRLNDKVIIHKAGDIIPEVVSVITEERDADSQAYPEP 409

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CPICQS +V   +        A RC    AC AQ  E+L HFVSR+A +I G+G   +
Sbjct: 410 QTCPICQSDLVHLEDE------VALRCVNP-ACPAQAKEKLFHFVSRNAMDITGVGPAVI 462

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
              +        ++ P+D++ L      +      +    + S  N+  +I++ R  SLE
Sbjct: 463 TQLYDKA----YVKDPSDLYQLDEATLLT------LDKVKEKSAQNILQAIDQSRENSLE 512

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +F LGIRHVG + AR +A  + S +               D  ++  +  +G+IIA +
Sbjct: 513 RLLFGLGIRHVGVKAARDIAMTFGSMEAIQTA----------DREAISAIDGIGEIIADS 562

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           +VE++ N   I  V  L +            +   +V S  + K +V TG L    R +A
Sbjct: 563 VVEYFANDEVIALVNRLSERGVNMTYLGSSPQAIASVDSFWQGKTVVLTGKLNHYSRQEA 622

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +   G  V+  +S+ TD+++ G++ GSKL KAQ L + I +EE+ L  L+ 
Sbjct: 623 KSLIEGQGGKVTGSVSKNTDVVVAGEDAGSKLTKAQDLDILIFDEEEMLSHLED 676


>gi|145220287|ref|YP_001130996.1| DNA ligase, NAD-dependent [Prosthecochloris vibrioformis DSM 265]
 gi|190359271|sp|A4SG85|DNLJ_PROVI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145206451|gb|ABP37494.1| DNA ligase, NAD-dependent [Chlorobium phaeovibrioides DSM 265]
          Length = 674

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 219/713 (30%), Positives = 349/713 (48%), Gaps = 50/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I+  R E   L  +I  H+  YY  +KP + D ++D L  R   +    P+L     P+ 
Sbjct: 4   IDALRSEAERLRSDIERHNHLYYVEAKPELSDYDFDLLLDRLVQLEREHPELV---TPDS 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG +      V H  P LSL   ++I ++ +F+ R+ R  + +         E K
Sbjct: 61  PTQRVGGTITKEFPSVEHREPMLSLANTYSIGEVEEFVGRLNRLLEAEGAQGRDTVAELK 120

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-------IE 186
            DG  +++ Y  G  +  A RGDG  G+D++  ++ +P+IP  L              +E
Sbjct: 121 FDGVAVSLLYRDGLLIRGATRGDGRRGDDITVNLKTVPSIPLRLGEFDGPFSAGEGREVE 180

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246
           VRGEV + K DF ALND         +ANPRNA +G L+  +  ++ R   +FV      
Sbjct: 181 VRGEVLMRKEDFEALNDTRPE--EDRFANPRNATAGTLKLQDSREVARRSLWFVAYYVSG 238

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                    + L+ +   GF   N  R  +    I ++       R  LPY+ DG+V K+
Sbjct: 239 LHDEDTRHVDRLKLLETAGFSTGNQYRLCHGIEEIEAFMQFWDEGRRALPYETDGVVVKL 298

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++    + LG  ++SPRW I++K+   +A+T L DI  Q+GR G +TPVA LEPV+I G+
Sbjct: 299 NDVRQWRLLGATSKSPRWAIAYKYPASRATTLLRDIVFQVGRLGTITPVAELEPVHIAGS 358

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  +TLHN D ++ L            +  GDRV+++++GEVIPKV+ +++ ER P   
Sbjct: 359 TVARSTLHNFDEMRRL-----------GVMPGDRVVIEKSGEVIPKVISVLLEERPPGLS 407

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P+ CP C + +V+           +  C     C AQ   R+ HF SR+A +IE L
Sbjct: 408 AKELPTHCPDCGTPLVQPEGE------VSWYCPNEEGCGAQIRGRVLHFASRNAMDIENL 461

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+  ++           ++ P D++ L+  +         +   G+ S  NL   + K R
Sbjct: 462 GESLVEQLVAK----GMVKDPGDLYFLREEELAG------LERMGEKSARNLLQGLLKSR 511

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S  R +F LGIRHVG   AR LAK   S +   +            +  L  VP +G 
Sbjct: 512 EQSFARLLFGLGIRHVGRATARELAKACSSIEVLKEA----------SFEELSEVPDIGP 561

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHK 665
           +IA++I +++  P     +E L +   P         V++  E   +VFTG LQ+  R  
Sbjct: 562 VIARSIRDWFLKPAIPSLIEKLRRAGLPLAAEEPGPLVNTNFEGLTVVFTGGLQRHDRSS 621

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A E V   G +V + +S+KT +++ G   GSKLEKA++LG++I+ E++F  LL
Sbjct: 622 AGELVVARGGIVVSTVSKKTGLVVAGKEAGSKLEKARKLGLRIITEDEFDALL 674


>gi|15827911|ref|NP_302174.1| NAD-dependent DNA ligase LigA [Mycobacterium leprae TN]
 gi|221230388|ref|YP_002503804.1| NAD-dependent DNA ligase LigA [Mycobacterium leprae Br4923]
 gi|7674013|sp|O33102|DNLJ_MYCLE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781376|sp|B8ZS27|DNLJ_MYCLB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|2414536|emb|CAB16425.1| DNA ligase [Mycobacterium leprae]
 gi|13093464|emb|CAC30658.1| DNA ligase [Mycobacterium leprae]
 gi|219933495|emb|CAR71800.1| DNA ligase [Mycobacterium leprae Br4923]
          Length = 694

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 223/726 (30%), Positives = 346/726 (47%), Gaps = 47/726 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M   +  PI      +  ++   L +E+  H   YY    PII D+E+DAL  R   +  
Sbjct: 1   MSSPEADPIGP----EVLQQWRKLTEEVREHQFRYYVRDAPIISDAEFDALLDRLTVLEE 56

Query: 61  AFPDLARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
             P+L     P+ P   +GG           H     SL+  ++ ++L  ++TRI     
Sbjct: 57  QHPELC---TPDSPTQLVGGAGFMTDFVATEHLERMFSLDNAFSGDELNAWVTRIRAEIG 113

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-- 177
                   +  E KIDG  +++ Y  G+   A  RGDG +GEDV+   R I  +P  L  
Sbjct: 114 NDAH----YLCELKIDGVALSLVYRDGRLTRATTRGDGRTGEDVTLNARTIEDVPERLTV 169

Query: 178 --SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITR 234
                +PE++EVRGEV+    DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R
Sbjct: 170 SDIYPLPEVLEVRGEVFFRVVDFQALNTSLVEEGKNPFANPRNSAAGSLRQKDPAVTAHR 229

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            L    HGLG         Q++    +R  G PV+      N   G+          R  
Sbjct: 230 KLRMICHGLGHIEGFRPATQHQAYLALRDWGLPVSEHTTLVNDIAGVQGCIAYWAEHRHE 289

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + ++IDG+V K+DE +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP
Sbjct: 290 VDHEIDGIVVKIDEVTLQRRLGSTSRAPRWAIAYKYLPEEAQTKLLDIRVNVGRTGRVTP 349

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A + PV + G+ +  ATLHN   +K            + + +GD V++++AG+VIP+V+
Sbjct: 350 FAFMTPVKVAGSTVGQATLHNPSEVKR-----------KGVLIGDTVVIRKAGDVIPEVL 398

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +V+ R    + F  P+ CP C + +  +      +  A  RC    +C  Q  ER+ H
Sbjct: 399 GPVVDLRDGSEREFVMPTTCPECGTTLAPE-----KEGDADIRCPNARSCPGQLRERVFH 453

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
             SR A +I+GLG +           A  I    D+FTL  +    T    N  G    +
Sbjct: 454 VASRSALDIQGLGYEAGVALL----AAQVITSEGDLFTLTEKALLRTELFRNKAGELSAN 509

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
              L  +++K +   L R + +L IRHVG   AR+LA  + S                  
Sbjct: 510 GKRLLVNVDKAKTAPLWRVLVALSIRHVGPTAARALATEFGSVDAILAA----------S 559

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
              L  V  VG  IA A+ E++    +   V          +   + +V    E   +V 
Sbjct: 560 PEQLAAVEGVGTTIAAAVTEWFTVDWHRVIVNKWRAAGVRMVDERDTSVLPTCEGLTIVV 619

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TG+L    R  A+E +   G  V+  +S+K   ++VGD PG K +KA +LGV I+NE+ F
Sbjct: 620 TGSLAGFSRDDAKEAIVARGGKVAGSVSKKIAYVVVGDLPGYKYDKAVELGVPILNEDGF 679

Query: 715 LFLLQQ 720
             LL+Q
Sbjct: 680 RLLLEQ 685


>gi|255038855|ref|YP_003089476.1| DNA ligase, NAD-dependent [Dyadobacter fermentans DSM 18053]
 gi|254951611|gb|ACT96311.1| DNA ligase, NAD-dependent [Dyadobacter fermentans DSM 18053]
          Length = 695

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 217/733 (29%), Positives = 355/733 (48%), Gaps = 66/733 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E   + +  L +++ Y++D YYQ S   I D E+D L +   A+   +P   +    
Sbjct: 1   MNPE---QRIQELSEKLHYYNDRYYQDSVSEISDYEFDQLLKELQALESEYPQFRQD--- 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +  S   V H  P LSL+  +N ++LR F  R+ R     D  +  +  E
Sbjct: 55  DSPTQRVGGTVTKSFNAVYHRYPMLSLDNTYNEDELRSFDDRVRRGL---DGEAYEYICE 111

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
            K DG  ++  YE G  V    RGDG  G++++  ++ I ++P RV +  IP + E+RGE
Sbjct: 112 LKFDGISLSFTYENGVLVRGVTRGDGTRGDEITNNVKTIRSLPLRVKADGIPPVFEIRGE 171

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
            ++  + F  LN+EM  +G   YANPRNAASG  +  +  +  R           +   F
Sbjct: 172 GFMPISSFQKLNEEMETLGENQYANPRNAASGSFKLQDSAEAARRGLDSYIYSFLSDNAF 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   E L  ++  GF V+ G ++ +T   +++Y +E +  R+ LP   DG+V K++ F 
Sbjct: 232 FKSHEESLLALKSWGFNVSPGWKKVSTIDEVIAYIHEWEEKRAHLPLATDGIVIKINSFE 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP---------- 360
            Q++LG  A+SPRW IS+K+  +     L  +  Q+GRTG +TPVA L            
Sbjct: 292 QQRELGFTAKSPRWAISYKYKAENKPAVLRMVTYQVGRTGAVTPVANLCDLSERALPYNQ 351

Query: 361 ---VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
              V++ G  +  ATLHN + ++ L            +R+ D V V+++GE+IPK+  + 
Sbjct: 352 VKGVHLSGTRVKRATLHNANELERL-----------GVRLNDTVFVEKSGEIIPKITGVD 400

Query: 418 VNERHPDAQ-PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           V++R      P  FP+ CP C   + R+          A  C     C  Q   R++HF+
Sbjct: 401 VSQRENYETEPVIFPTHCPECGHELQRNEGE------VAFFCPNDSHCPPQLKGRIEHFI 454

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG------- 529
            R A NIE LG+ +++  F        +R PAD++ L   +     K             
Sbjct: 455 HRKAMNIESLGEGKIELLFD----LDLVRTPADLYDLNHDKLLGLEKNLLNEETGKLKKI 510

Query: 530 -FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
            F + +V N+   I   R +  +  +F+LGIR VG  +A  LA Y+ S +          
Sbjct: 511 SFREKTVENILKGIEVSRTVPFKNVLFALGIRFVGQTVAEKLAAYFKSMRALRAAT---- 566

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSE 646
                 +  L  VP +G  IA +I  F+  P N   VE L +         +  +  S  
Sbjct: 567 ------YEQLTAVPEIGGRIALSIESFFSVPENQMLVERLERAGLQMESDEKPVEIESDL 620

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           ++ K  V +G  +  +R + +E +   G  V + +S K + ++ G N G SKLEKA++LG
Sbjct: 621 LDGKTFVISGVFENFERDELKEKIEANGGKVLSGVSGKLNYLLAGANMGPSKLEKARKLG 680

Query: 706 VKIMNEEQFLFLL 718
           V I++EE+FL ++
Sbjct: 681 VTIISEEEFLAMI 693


>gi|310657889|ref|YP_003935610.1| DNA ligase [Clostridium sticklandii DSM 519]
 gi|308824667|emb|CBH20705.1| DNA ligase, NAD(+)-dependent [Clostridium sticklandii]
          Length = 683

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 225/712 (31%), Positives = 367/712 (51%), Gaps = 50/712 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E+++ +    +++ L + I +H   YY    P I D+++D L +   A+   +P+     
Sbjct: 3   ESINEKDIYNKINELRERIEHHSILYYVQDSPEISDADFDMLMKELIALEEKYPEYI--- 59

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  +IGGE      +V HS+  +SL   ++ +DL  F +R+ +   K       + 
Sbjct: 60  TEDSPTQRIGGEALSKFDQVRHSVQMMSLSNAFSKQDLLDFDSRVRQMIPKP-----EYV 114

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           LE KIDG  + + YEKGKF   A RGDG  GEDV+  ++ I +IP  L   +   + VRG
Sbjct: 115 LEFKIDGLSVALTYEKGKFKVGATRGDGVVGEDVTKNLKTIKSIPMKLKEEVS--LVVRG 172

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EVYI K  F  LN +    G   +ANPRNAA+G LR+L+      R L+ F+  L +  +
Sbjct: 173 EVYIPKEKFKELNLQQEENGLALFANPRNAAAGSLRQLDSNITAKRPLDIFIFNLQEIID 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L+ ++ LG  V+      ++   +    +     R  L ++IDG+V KV++
Sbjct: 233 KDIYTHSEALEYLKALGLKVSPMRNVYSSMEAVWDEISVWHDKRHELDFEIDGIVIKVND 292

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + +  LGE A++PRW I++KF  ++  T++ DI +Q+GRTG +TP A L PV I G+ +
Sbjct: 293 LAQRAMLGETAKAPRWAIAYKFPAERQLTQIEDIIVQVGRTGTITPTAILTPVRIAGSTV 352

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHNED+IK            +DI++ D   +++AG++IP+V ++ +++R      F
Sbjct: 353 SRATLHNEDFIK-----------AKDIKIKDWAYIQKAGDIIPEVYEVDISKRTGVEYEF 401

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C +  VR       K          + C AQ    + HFVS+ A +I+ LG+
Sbjct: 402 KMPETCPECHTPTVRVEGEAALK-------CPNITCPAQIKRGIIHFVSKSAMDIDKLGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +   ++    A  I   ADI+ L         +I  +   G  SV+NL +SI + +  
Sbjct: 455 AIVIQLYE----AGLINDMADIYYLNPD------EILALPRMGSKSVSNLMNSIEESKTA 504

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L+R +  LGIR++G + A++LA  Y   +   Q               L+++  +G+ +
Sbjct: 505 GLDRLLIGLGIRYIGTKAAKTLASVYSDIEQIKQA----------SIEELLQIDEIGEKM 554

Query: 609 AQAIVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           AQ+I EF++   N+  +E L L  VS S+ +         E  K V TGTL+ ++R +A 
Sbjct: 555 AQSIFEFFKVEENLNLIERLKLAGVSMSVDKKNSQQKPIFEGMKFVLTGTLETLKRDEAA 614

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             + +     S+ +S+ T  +I G+  GSKL+KA  LGV ++NEE F  LL+
Sbjct: 615 VLIEERLGKTSSSVSKNTTAVIAGEEAGSKLDKAIALGVAVINEEVFKKLLK 666


>gi|240145659|ref|ZP_04744260.1| DNA ligase, NAD-dependent [Roseburia intestinalis L1-82]
 gi|257202247|gb|EEV00532.1| DNA ligase, NAD-dependent [Roseburia intestinalis L1-82]
          Length = 671

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 207/710 (29%), Positives = 357/710 (50%), Gaps = 50/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+   ++  L  +I+YH D YY    P I D E+D L ++   +    P+L      
Sbjct: 1   MTPEE---QIKELRDKINYHSDRYYNQDSPEISDYEFDMLMQQLKKLEKEHPELV---TK 54

Query: 72  NGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P   +GG     +   V H++P LSL+ +++ E++  F+ ++         +   F +
Sbjct: 55  DSPTQHVGGTAKRTAGVLVHHNVPMLSLQDVFSKEEVVDFVEQMKEQL-----DDPEFVV 109

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           E KIDG  + +RYE G    A  RGDG + GEDV+A  + I  + + L    PE +E+RG
Sbjct: 110 EYKIDGLSMALRYENGDLSLALTRGDGVNFGEDVTANAKVISDVKKKLKDK-PEYLEIRG 168

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EVY+   DF  +N++   +G+K +ANPRN A+G LR+L+      R L+ FV  + +   
Sbjct: 169 EVYMKNEDFDRVNEQQELLGKKIFANPRNCAAGTLRQLDSRVTKERKLSMFVFNIQQVRG 228

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      +  + ++  G P+    +   T   + +    +   R  L YDIDG V K++ 
Sbjct: 229 MDIMTHTQGYEFLKRQGIPIIEDYKVCKTADEVWNAITAIGENRGNLGYDIDGAVIKINR 288

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           +S ++ LG  ++ P+W I++K+  ++  T+LLDI++ +GRTG +TP A  EPV + G  +
Sbjct: 289 YSDRELLGNTSKVPKWAIAYKYPPEEKETKLLDIELSVGRTGRITPTAVFEPVRLCGTSV 348

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN+D+I  L           D+ +GD ++V ++GE+IPKV ++   +R    + F
Sbjct: 349 SRATLHNQDFIDDL-----------DVGIGDTIVVYKSGEIIPKVKEVRKEKRPDGWKRF 397

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C ++  R+ +       A  +CT    C AQ    + +FV RDA +I+G G 
Sbjct: 398 MIPDVCPVCGAKTEREKD------TADIKCTSP-NCPAQLERHIINFVGRDAMDIKGFGT 450

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             ++   +       I+  ADIF L+  ++    +        + +   L ++I K +  
Sbjct: 451 VYIEELVR----LGYIKDIADIFELKDHREELIEQGII---GKEKNTDKLLETIEKAKEN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
                +   GI +VG   A+++ K + S  +              D  +L+ V  VG++ 
Sbjct: 504 DAYMLLTGFGIPNVGKAAAKTIMKRFPSILDLEDA----------DRDALMEVDDVGEVS 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A  I  F+ + +N   +  L            + + S +  K +V TGTL  + R +A E
Sbjct: 554 ADCIFRFFHDEKNKEMIARLKSLGVNMEAEETETIDSAVSGKTVVITGTLPTLGRKEAAE 613

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            V + G  VS  +S+KTD ++ G++ GSKL KAQ+LG+ ++ E +   LL
Sbjct: 614 LVEKYGGKVSGSVSKKTDYVVAGESAGSKLTKAQELGITVLTEAELFVLL 663


>gi|298528094|ref|ZP_07015498.1| DNA ligase, NAD-dependent [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511746|gb|EFI35648.1| DNA ligase, NAD-dependent [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 679

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 253/716 (35%), Positives = 372/716 (51%), Gaps = 49/716 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E        L +EI+ H+  YY    P+I D EYD +      +    P L  S     P
Sbjct: 6   EHIEHRAEELRREINLHNYYYYVLDDPLISDVEYDRMLAELKDLEEKHPGLKHSG---SP 62

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K+G           HS+P  SL+  +++E++R+F+ RI +     D     F  EPK+
Sbjct: 63  TMKVGAPPAGQFEHREHSLPMYSLDNSFSLEEVREFVQRIKKQIPDADPY---FWAEPKL 119

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR--VLSLNIPEIIEVRGEVY 192
           DG  + I YE G FV A+ RGDG+ GEDV+  IR I  +P     +   PE +EVRGEV 
Sbjct: 120 DGLAVEIIYENGLFVAASTRGDGYVGEDVTDNIRTIRNLPLTLFYTEFFPEYLEVRGEVV 179

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF- 250
           I + +F  LN++    G K +ANPRNAA+G +R+L+     +R + FF +G G +     
Sbjct: 180 IPRQEFTRLNEDKARKGEKVFANPRNAAAGSVRQLDSRITASRPVYFFSYGTGISRFKSG 239

Query: 251 --AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q E+ + +  LG PV  G R       +   Y E    R    ++IDGLV KV++
Sbjct: 240 AGWQSQEEIARGLNALGLPVVPGGRICRDPAEVEECYREQLDRREQSDFEIDGLVIKVND 299

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ++LG  +R+PRW ++ KF   Q  T+L DI +Q+GRTG+LTPVA LEP+N+GG ++
Sbjct: 300 IGLQQRLGFTSRAPRWAMAVKFPALQGRTKLKDIQVQVGRTGVLTPVAILEPLNLGGVVV 359

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHNE+ I+            +D++VGD VLV+RAG+VIP+VV     ER    + F
Sbjct: 360 SRASLHNENEIR-----------AKDLKVGDTVLVQRAGDVIPEVVRPETRERDGTQKEF 408

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP CQS V R  +       AA RC    +C A+  ++L +F  +   +IEGLG+
Sbjct: 409 VFPEKCPACQSPVARIDDE------AAIRCLNM-SCPARLEQQLIYFAGKQGLDIEGLGR 461

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           Q +    K       +  PADIF L         K+   L    +    L       +  
Sbjct: 462 QWIKVLVKK----GLLCSPADIFRLSLDDLLPLDKMGRKLAQNMLDSIRL-----AAQKA 512

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           +L R I +LGIRHVG E A+ LA  Y      A    N          SL  +  +G  +
Sbjct: 513 TLPRLIAALGIRHVGVETAKRLAANYKDLDELAAAEKN----------SLQMIEDIGPEV 562

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A +I  F+ NP+N   +E   +                ++ KKLVFTG +  + R +A+E
Sbjct: 563 ASSIAGFFANPQNRKLLEEFKEIGLWPEHAAAAGEDLPLKGKKLVFTGGMHNLSRDRARE 622

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            V +LG  VS  +S  TD++I GDNPGSKL KA++LG+ I++E++FL L++ ++ +
Sbjct: 623 IVEKLGGKVSGSVSGNTDMVIAGDNPGSKLSKARELGLDILSEQEFLDLIENWSAS 678


>gi|91216495|ref|ZP_01253461.1| DNA ligase [Psychroflexus torquis ATCC 700755]
 gi|91185289|gb|EAS71666.1| DNA ligase [Psychroflexus torquis ATCC 700755]
          Length = 667

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 217/708 (30%), Positives = 358/708 (50%), Gaps = 49/708 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             + ++ +L QE+  H+  YY    P I D ++D        +    P+     DPN P 
Sbjct: 2   SIQDQIENLRQELHEHNYKYYVLDAPEISDYDFDMKLNALQELEKTHPEYK---DPNSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GGE+  +   V H  P  SL   ++ EDL  + TR+ +  ++     + FT E K D
Sbjct: 59  MRVGGEVTKNFKTVVHDFPMYSLSNSYSKEDLEDWQTRVQKIIEE----PVEFTCELKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194
           G  I++ YE G+F+ A  RGDG  G++V+  ++ I ++P  L   N P   ++RGE+ + 
Sbjct: 115 GASISLTYEDGEFLRAVTRGDGTQGDEVTHNVKTIRSVPLKLKGDNYPRRFDIRGEIVLP 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
              F  +N E + +G +PYANPRN  SG L+  +  ++ +     +        +    Q
Sbjct: 175 YKGFAKMNAERVELGEEPYANPRNTTSGSLKLQDSAEVAKRPLLCLLYNLTGENLGVSTQ 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L K R  GF V    +   +   + +Y N     R  LPY+ DG+V KV+    Q++
Sbjct: 235 MESLNKSREWGFNVPKEAKLTKSIDEVFAYINYWDEHRHDLPYETDGVVIKVNSLQQQEE 294

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW +++KF  +Q ST L  I  Q+GRTG +TPVA L+P+ + G  +  A+LH
Sbjct: 295 LGYTAKSPRWAMAYKFKAEQVSTTLNQITYQVGRTGAITPVANLDPIQLAGTTVKRASLH 354

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPSF 433
           N D I+ L           DIR GD V V++ GE+IPK++ +   +R    +QP  +   
Sbjct: 355 NADQIEKL-----------DIREGDVVFVEKGGEIIPKIIGVDFKKRDSESSQPTVYLKE 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C++ + R          A H C     C  Q + R++HF+SR A +IEGLG + +  
Sbjct: 404 CPECETPLERKEGE------ALHFCPNTEGCPPQIIGRIQHFISRKAMDIEGLGGETVAL 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             + +     I   AD++TL++           +    + S  NL   +   ++I  ER 
Sbjct: 458 LVRED----LIEDYADLYTLRKEDV------LPLERMAEKSAVNLIKGVEASKDIPFERV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           ++ LGIR+VG  +A+ L K + S    A               +L+ V  +G+ IAQ++V
Sbjct: 508 LYGLGIRYVGETVAKKLVKAFKSIDVLASA----------SLENLVAVDEIGERIAQSVV 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +F+++  N   ++ L           E+    S+ + +  LV +G   K+ R + Q+ + 
Sbjct: 558 DFFKDDANKLRIDRLRNYGLNLEISEEEMEGQSNTLIDLTLVISGVFLKVSRRELQDLIE 617

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + G   ++ +S+KTD ++ G+N G SKL KA+ LGVKI+ E++FL ++
Sbjct: 618 KHGGKNTSSISKKTDYLVAGENMGPSKLAKAENLGVKIITEDEFLTMV 665


>gi|302537077|ref|ZP_07289419.1| DNA ligase, NAD-dependent [Streptomyces sp. C]
 gi|302445972|gb|EFL17788.1| DNA ligase, NAD-dependent [Streptomyces sp. C]
          Length = 736

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 216/739 (29%), Positives = 354/739 (47%), Gaps = 61/739 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR++   L +++  H   YY   +P++ D+E+D L R  +A+   +P+L     P+ P  
Sbjct: 14  AREQHQLLAEQVEEHRFRYYVNDQPVVSDAEFDQLLRSLEALEEQYPEL---RTPDSPTQ 70

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K+ G        V H    LSL+  ++ E+L  +  R+ R     D +   +  E K+DG
Sbjct: 71  KVAGAYETDFASVEHRERMLSLDNAFDDEELSAWADRVARDVNTPDYH---YLCELKVDG 127

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISK 195
             + + YE G+   AA RGDG +GED++  +R I  IP  L  +  P ++E+RGEVY   
Sbjct: 128 LAVNLTYENGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLKGDRIPALVEIRGEVYFPM 187

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN  ++    KP+ANPRNAA+G LR+ +P    TR L+  VHG+G       + Q
Sbjct: 188 EKFEELNARLVEASGKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREGFEIERQ 247

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            +  + +R  G P     +  ++   +  +       R ++ ++IDG+V K+DE +LQ +
Sbjct: 248 SQAYELLREWGLPTARHNKVVSSLAEVREFIALFGENRHSVEHEIDGVVVKLDEIALQGR 307

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  AR+PRW I+ K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ +  ATLH
Sbjct: 308 LGSTARAPRWAIAWKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSEVEFATLH 367

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N++ +K            + + +GD V++++AG+VIP+++  +V+ R    + F  P+ C
Sbjct: 368 NQEVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEREFVMPALC 416

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK------ 488
           P C + +         +     RC  G  C AQ  ER+ +   R + +IE  G       
Sbjct: 417 PECGTELRPM-----KEGDIDVRCPNGQTCPAQLRERIYYLAGRQSLDIENFGIVAAAAL 471

Query: 489 ------------QQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTK-----IENILG 529
                        + D F  + +    I+         L +R   +  +       N  G
Sbjct: 472 TGPLEPAQPPLLDEGDLFDLTIEQLLPIKAYVRDPDSGLPKRDPKTGEEKIVTVFANQKG 531

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
               +   + ++I   +   L R I  L IRHVG   A +LA+ + S     Q       
Sbjct: 532 EPKKNALAMLENIAAAKQRPLARIINGLSIRHVGPVAAEALAREFRSIDRIEQATE---- 587

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEI 647
                   L     VG IIA ++ E++    +   +                       +
Sbjct: 588 ------EELTATEGVGAIIAASLKEWFAVDWHQEILRKWRAAGVRMEEEGSAEEEGPRPL 641

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
           E   +V TGTLQ   R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA QLG+ 
Sbjct: 642 EGLTVVVTGTLQNHTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAVQLGLA 701

Query: 708 IMNEEQFLFLLQQYNTTLR 726
           I+++  F  LL+Q     R
Sbjct: 702 ILDDAGFEVLLEQGADAAR 720


>gi|116074145|ref|ZP_01471407.1| DNA ligase [Synechococcus sp. RS9916]
 gi|116069450|gb|EAU75202.1| DNA ligase [Synechococcus sp. RS9916]
          Length = 691

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 216/724 (29%), Positives = 339/724 (46%), Gaps = 56/724 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++   A +    L   ++     YY    P++ D  YD L R    +  A P L      
Sbjct: 1   MTAASA-QRAQELRGLLNTAAHAYYVLDAPVMEDPVYDRLYRELLELESADPSLVTV--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NSI 126
           + P  ++GG        V H I  LSL+  +N E+L  +  R+ R   ++        ++
Sbjct: 57  DSPTQRVGGTPAEGFSSVRHRIGLLSLDNAFNAEELGAWYGRLLRVLDREPSEGQPRPAL 116

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEII 185
               E KIDG  + + YE G  V AA RGDG  GED++A +R I ++P  L     P  +
Sbjct: 117 AMVGELKIDGNALALSYENGVLVRAATRGDGEQGEDITANVRTIGSVPLRLQLDQPPAWL 176

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244
           EVRGE +I    F  +N +    G   +ANPRNA +G LR+L+P     R L+FF + L 
Sbjct: 177 EVRGEAFIPDGVFDGINADRQQRGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLH 236

Query: 245 KTSEIF---AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
              +        Q++ LQ +R  GF VN           + +++N     R  L Y  DG
Sbjct: 237 LPDDWQGQRPTSQWDSLQWLRDAGFKVNPNAELLPDLDAVEAFFNSWDGGRRQLDYATDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V K+D   LQ   G   ++PRW I+ K+  ++A ++LL +  Q+GRTG++TPVA  E V
Sbjct: 297 VVVKLDNLRLQDAAGFTQKAPRWAIALKYPAEEAPSKLLRLTCQVGRTGVITPVAEFEAV 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  ++ ATLHN D +  L           D+  GD ++V++AGE+IP+VV ++   R
Sbjct: 357 PLAGTSVSRATLHNADRLDEL-----------DLHAGDTIVVRKAGEIIPEVVRVLKELR 405

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              A+    P  CP C S +VR+         AA RC    +C A     L+H+VS+ A 
Sbjct: 406 PTSAERLQLPHTCPECGSTLVREAGE------AATRCINS-SCPAILRGALRHWVSKGAL 458

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +++GLG + ++           ++  AD++ L     +S      +   G  S  NL  +
Sbjct: 459 DVDGLGSKLIEQLVDR----GLVQSIADLYRLDAALLSS------LERMGQKSAENLVSA 508

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +   R     R ++ LGI HVG   A++LA  +           N          S+  V
Sbjct: 509 LAASRQQGWARQLYGLGIHHVGEVNAKALAATFPDADLLQTAACN-------APESITAV 561

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEV-------SPSIGRHEKNVSSEIENKKLVF 654
             +GD IAQ++ +++ NP N+  +  L ++                 +    +     V 
Sbjct: 562 FGIGDEIAQSLQQWFANPSNLQLLNGLREQGFSLALSADEQRRAEAASSERHLSGSTFVL 621

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL  + R +A+E +   G  VS  +S+KT  ++ GD  GSKL KA+ LG+ I++E   
Sbjct: 622 TGTLPTLSRSQAKELIEAAGGKVSGSVSKKTSYVVAGDEAGSKLTKAESLGLTILDETGL 681

Query: 715 LFLL 718
             LL
Sbjct: 682 QALL 685


>gi|167763098|ref|ZP_02435225.1| hypothetical protein BACSTE_01465 [Bacteroides stercoris ATCC
           43183]
 gi|167699438|gb|EDS16017.1| hypothetical protein BACSTE_01465 [Bacteroides stercoris ATCC
           43183]
          Length = 665

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 222/707 (31%), Positives = 356/707 (50%), Gaps = 50/707 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L  ++  H+  YY  + P I D E+D   R    +    P+    +D N P  
Sbjct: 3   VKEKIDQLRADLHRHNYNYYVLNAPEISDKEFDDRMRELQELEKEHPEY---QDDNSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +V H  P LSL   ++  ++  F  R+ +      +       E K DG
Sbjct: 60  RVGSDLNKNFTQVAHKYPMLSLGNTYSESEVTDFYDRVKKAL----NEDFEICCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
           T I++ YE GK V A  RGDG  G+DV+  ++ I TIP VL  + PE  E+RGE+ +   
Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGSYPESFEIRGEILMPWE 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F  LN E  A     +ANPRNAASG L+  N   +               E+   G YE
Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGEELPCDGHYE 235

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ     GF  +  +++A++   +  Y     + R  LP   DG+V KV+    QK LG
Sbjct: 236 NLQAAAGWGFKTSEHMKKAHSLEEVFEYIRYWDTERKNLPVATDGIVLKVNSMRQQKNLG 295

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN 
Sbjct: 296 FTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHNA 355

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435
           D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F + CP
Sbjct: 356 DIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSMLIGEKVKFITHCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S+++R          AAH C    +C  Q   +++HF+SR A NI+GLG + +D F+
Sbjct: 405 ECGSKLIRYEGE------AAHYCPNETSCPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I+  AD++ L      +      +   G+ S  N+   I   + +  ER +F
Sbjct: 459 R----LGLIKNTADLYQLTADDIKN------LDRMGEKSAENIIKGIEASKEVPFERVLF 508

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGIR VG  +A+ +AK +                   +   LI +  +G+ IAQ+I+ +
Sbjct: 509 ALGIRFVGETVAKKIAKSFNDIDELENA----------NLEKLINIDEIGEKIAQSILTY 558

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           + NP N   +E L K     + R E+++S    ++  + +V +G      R + +E + +
Sbjct: 559 FANPLNCELIERL-KSTGLQLYRREEDLSGYTDKLAGQSIVISGVFTHHSRDEYKELIEK 617

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G      +S KT  I+ G+N G +KLEKA +LG+K+M+E++FL L+
Sbjct: 618 NGGKNVGSISAKTSFILAGENMGPAKLEKAHKLGIKLMSEDEFLTLI 664


>gi|291278945|ref|YP_003495780.1| NAD-dependent DNA ligase [Deferribacter desulfuricans SSM1]
 gi|290753647|dbj|BAI80024.1| NAD-dependent DNA ligase [Deferribacter desulfuricans SSM1]
          Length = 663

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 244/705 (34%), Positives = 383/705 (54%), Gaps = 52/705 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   KE   L  EI+YHD  YY  + P+I D EYD L +R   I   +P++     P  P
Sbjct: 3   ESILKEYQKLVDEINYHDYRYYVLNDPVISDYEYDQLYKRLKEIESKYPEII---SPYSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G     +L  V H +  LSL+  +N  +L+ F  R+ +  +        F +EPKI
Sbjct: 60  TQRVGYAPVSNLKTVKHEVKMLSLDNTYNEGELKDFYNRVLKNLESVP----SFVVEPKI 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +++ YE G     A RGDG +GEDV+  ++ I +IP  L + +   + VRGEV++ 
Sbjct: 116 DGAAVSLTYEDGILQIGATRGDGVTGEDVTHNVKTIKSIP--LKIAVKGKLVVRGEVFLP 173

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
           K++F  +NDE +  G +P+ANPRNAA+G L+ L+P       N  +              
Sbjct: 174 KSEFERINDERVKNGLEPFANPRNAAAGTLKLLDPRIA-AQRNLDIFIYSVDIGRKHDTH 232

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           ++ L  ++ LGF VN  +++  +F  I+S+   +  +R  L Y+IDG V KV+E+S Q+Q
Sbjct: 233 FDDLNYLKGLGFKVNPLIKKVESFEDIISHIENLGKMRDELDYEIDGAVIKVNEYSYQEQ 292

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LGE  + PRW ++ K+  +  +T L D+  Q+GRTGI+TPVA LEPV+I G+++  ATLH
Sbjct: 293 LGETIKYPRWAVAFKYPPELKTTVLKDVIFQVGRTGIITPVAVLEPVHISGSVVKRATLH 352

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           NED I+ L           D+++GD V V+++GE+IPK++ ++  +R    +   FP  C
Sbjct: 353 NEDEIRRL-----------DVKIGDTVFVEKSGEIIPKIIKVVKEKRTGKEKEIVFPEKC 401

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C   V ++          A+       CSA+    + HF SRDA +I+GLG+  ++ F
Sbjct: 402 PVCNGLVRKEN---------AYYVCLNPDCSAKLKASIIHFASRDAMDIKGLGEAIVERF 452

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    ++  ADI+TL         KI  + GFG  S  NL  SI   +N S +R +
Sbjct: 453 VD----LGFLKSIADIYTLDFE------KIALLDGFGKKSAENLKKSIEDSKNRSFDRVL 502

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++LGIRHVG + AR L  ++ + +   +               L+ +  VG+IIA+++  
Sbjct: 503 YALGIRHVGIKTARILTNHFKNIEKLQKAT----------IEELVSIDEVGEIIAKSVYY 552

Query: 615 FYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
             ++   +  +E L       S+   ++N S +++  K V TGTL K  R+   E + +L
Sbjct: 553 TLRDENFLKLIERLKSYGLKFSMEDDKENKSEKLKGLKFVITGTLSK-PRNYYVELIEKL 611

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G  VS+ +S+KTD +IVG++PGSK  KA  LGVK +NEE+F  L+
Sbjct: 612 GGEVSSSVSKKTDYVIVGEDPGSKYNKAISLGVKTINEEEFYKLI 656


>gi|312863154|ref|ZP_07723392.1| DNA ligase (NAD+) [Streptococcus vestibularis F0396]
 gi|322516268|ref|ZP_08069198.1| NAD-dependent DNA ligase LigA [Streptococcus vestibularis ATCC
           49124]
 gi|311100690|gb|EFQ58895.1| DNA ligase (NAD+) [Streptococcus vestibularis F0396]
 gi|322125241|gb|EFX96614.1| NAD-dependent DNA ligase LigA [Streptococcus vestibularis ATCC
           49124]
          Length = 652

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 217/701 (30%), Positives = 356/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K +  L  +++ +   YY    P + D++YD L R    +    P+L ++   + P ++
Sbjct: 2   EKRMKELVSKLNQYAKEYYTEDNPSVSDADYDKLYRELVDLEVEHPELVQA---DSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRVK-----DEFPNADYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP  L L+ P  I VRGE Y+ + +
Sbjct: 114 SISLTYVDGVLQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAE 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N +    G   +ANPRNAA+G LR+L+   +            + S      Q ++
Sbjct: 172 FERINIQRQENGEAEFANPRNAAAGTLRQLDTKVV-AERRLATFLYQEASPTERLTQNDV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN      ++   I  +   +   R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LNEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDDLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    LL +D Q+GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAELLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++ ++R     P   P+ CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQE-PMEVPTQCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC    +C AQ  E L HF SRDA NI G+G   ++  FK+
Sbjct: 399 GSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNIAGMGPSVVEKLFKA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           E     ++  ADI+ L  +          + GF + S   LY +I   +  S E+ ++ L
Sbjct: 452 E----LVKDVADIYGLNSQDF------LQLEGFKEKSAEKLYSAIQVSKENSAEKLLYGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA++++ L + + S Q  A            D  ++  V  +GD+IA++I  ++ 
Sbjct: 502 GIRHVGAKVSKQLLEAFGSIQELASA----------DVEAIAAVDGLGDVIAKSIQRYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  ++ L            +    + +  K +V TG L+ ++R +A+  +  LGA 
Sbjct: 552 KEEAQVLMKELESYGVNLSYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAKLEALGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++ G + GSKLEKAQ LG+++ +E   L L
Sbjct: 612 VTGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 652


>gi|317477010|ref|ZP_07936252.1| DNA ligase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906803|gb|EFV28515.1| DNA ligase [Bacteroides eggerthii 1_2_48FAA]
          Length = 666

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 221/707 (31%), Positives = 353/707 (49%), Gaps = 49/707 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++ +  L  ++  H+  YY  + P I D E+D + R    +    P+    +D N P  
Sbjct: 3   IKERIDQLRTDLHRHNYNYYVLNTPEISDKEFDDMMRELQDLEKEHPEY---QDENSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +VTH  P LSL   ++  ++  F  R+ +      +       E K DG
Sbjct: 60  RVGSDLNKNFTQVTHKYPMLSLGNTYSENEVTDFYDRVKKAL----NEDFEICCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
           T I++ YE GK V A  RGDG  G+DV+  ++ I TIP VL  N  PE  E+RGE+ +  
Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNNYPEHFEIRGEILMPW 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
             F  LN E  A     +ANPRNAASG L+  N   +               E+   G Y
Sbjct: 176 EVFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGEELPCDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ     GF ++   ++ ++   +  Y     + R  LP   DG+V KV+    QK L
Sbjct: 236 ENLQTAAGWGFKISEHTKKTHSLEEVFEYIRYWDTERKNLPVATDGIVLKVNSMRQQKSL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNRVTYQVGRTGAITPVANLDPVQLSGTIVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434
            D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F + C
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARGMLIGEKVKFITHC 404

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S++VR          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F
Sbjct: 405 PECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDTF 458

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I+  AD++ L      +      +   G+ S  N+   I   + +  ER +
Sbjct: 459 YR----LGLIKDTADLYQLTAEDIKN------LDRMGEKSAENIIKGIKASKEVPFERVL 508

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ +AK + + +               D   L  +  +G+ IAQ+I+ 
Sbjct: 509 FALGIRFVGETVAKKIAKSFNNIEELENA----------DLEKLTSIDEIGEKIAQSILI 558

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++ +P N+  +E L         + E     + ++  + +V +G      R + ++ + +
Sbjct: 559 YFSSPLNVNLIERLKSAGLQLYRKEEDLNEYTDKLAGQSIVISGVFTHHSRDEYKDLIEK 618

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G      +S KT  I+ G+N G SKLEKA +LG+KI++E++FL L+
Sbjct: 619 NGGKNVGSISTKTSFILAGENMGPSKLEKAHKLGIKIISEDEFLTLI 665


>gi|229823252|ref|ZP_04449321.1| hypothetical protein GCWU000282_00550 [Catonella morbi ATCC 51271]
 gi|229787418|gb|EEP23532.1| hypothetical protein GCWU000282_00550 [Catonella morbi ATCC 51271]
          Length = 671

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 222/715 (31%), Positives = 365/715 (51%), Gaps = 56/715 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            +  +  +  L  ++  ++ +   YY   + ++ D+ YDAL R  + I  A P+      
Sbjct: 2   KMPSQNLQARLEEVKHLLNDYAYHYYVLDQSLVSDASYDALYRELEEIEAAHPEWI---T 58

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+ P  ++G ++     KV H+    SL   ++ E++ +FI R+     ++ +  + F  
Sbjct: 59  PDSPTQRVGDQLLEGFSKVAHAESMYSLGNAFSPEEVTQFIERVT----QQVEGPVSFMC 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  I + Y+ G FV  A RGDG  GED++  +R I ++P  L  N+   +EVRGE
Sbjct: 115 ECKIDGLAIALTYQDGVFVRGATRGDGTIGEDITQNLRTIRSLPLRLRQNLS--VEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249
            Y+ K  FLALN+E  A G++ + NPRNAA+G LR+L+P     R LN F++    T E 
Sbjct: 173 CYMPKAVFLALNEEREAQGQEIFKNPRNAAAGGLRQLDPRAVADRQLNIFLYSAVYTDEF 232

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             + Q  +      LG   N   R+  T   ++ Y   +   R  LPY+IDG+V KV+  
Sbjct: 233 HPESQAGLFAAFEQLGLRTNPLRRECQTAEEVIDYIQMIGQQRHDLPYEIDGVVIKVNHI 292

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+ LG   ++PRW I++KF  ++A T L +++  +GRTG++TP A ++PV + G  + 
Sbjct: 293 DQQQALGFTVKAPRWAIAYKFPAEEAVTTLREVEWTVGRTGVVTPTAIMDPVPLAGTTVQ 352

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN D I+ L           D+R+GD+V + +AG++IP++  +++ +R  D+QP +
Sbjct: 353 RASLHNVDLIESL-----------DVRIGDQVTIHKAGDIIPEITSVLLAKRPQDSQPLA 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP CQ+ +VR       +          L C AQ+L  L HFVSR A NI+GLG +
Sbjct: 402 IPTHCPECQTALVRQGEEVALR-------CPNLVCPAQRLALLSHFVSRGAMNIQGLGPR 454

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+    S+           +  L    + S   + ++    + S   L  +I   ++ S
Sbjct: 455 ILNQLVASQA----------VTELDDLYRLSLEDLLSLDKIQEKSAQKLLAAIEASKSNS 504

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ER +F LGIRHVGA+ AR + + +      +Q               +  +  VG II+
Sbjct: 505 AERLLFGLGIRHVGAKAARLVLQVFGDLNRLSQAT----------AEEIGAIEGVGPIIS 554

Query: 610 QAIVEFYQNPRNICAVEALLKEVS--------PSIGRHEKNVSSEIENKKLVFTGTLQKI 661
           Q++V++     +   ++ L +           P      +  +     K +V TGT++  
Sbjct: 555 QSLVQYLTLESSQAMLKRLAEAGVNLTYQGPQPLEVAQGETANDFWLGKTVVLTGTMESY 614

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            R +A+E +   GA V+  +S+KTD ++ G   GSKL KA+ LGV I++E  FL 
Sbjct: 615 SRSEAKELLEARGAKVTGSVSKKTDYLVAGQEAGSKLSKAESLGVTILDEASFLA 669


>gi|116493340|ref|YP_805075.1| NAD-dependent DNA ligase [Pediococcus pentosaceus ATCC 25745]
 gi|122265196|sp|Q03DT9|DNLJ_PEDPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116103490|gb|ABJ68633.1| NAD-dependent DNA ligase [Pediococcus pentosaceus ATCC 25745]
          Length = 675

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 222/716 (31%), Positives = 377/716 (52%), Gaps = 51/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E + +E+A K   +L + +      YY    P + D EYD       A+  AFP++   
Sbjct: 7   LEEMQVEEASKLAQNLREILDRWSKLYYTKDAPEVEDYEYDEKYADLVALEEAFPEIITQ 66

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +    ++GGE+     KVTH+ P LS+  +++ ++L +F  RI +       + + +
Sbjct: 67  ---DSITQRVGGEILEGFTKVTHTEPMLSMGDVFSRDELVEFDNRIQKNVG----HPVDY 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  I++ Y+ G+ +  + RGDG+ GED++  ++ I ++P+   L  P  IEVR
Sbjct: 120 NVELKIDGLAISLIYQDGELIQGSTRGDGNIGEDITKNLKTIKSVPQK--LTRPLSIEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GE ++ K  F  LN + +  G+  +ANPRNAA+G LR+LN      R L+ F++ +  ++
Sbjct: 178 GECFMPKASFAKLNAQQLEDGKPVFANPRNAAAGSLRQLNTNVTKKRDLDTFIYTVVDSN 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           ++ AK Q++ +Q M  LGF  N           +  Y  + +  R  LPY IDG+V KV+
Sbjct: 238 QLGAKTQHQAIQMMAELGFNTNPTQEVCANLDEVWDYIAKYEGQREDLPYGIDGIVLKVN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + SLQ++LG   + PRW I++KF  ++A+T + DI+  +GRTG++TP A ++PV + G  
Sbjct: 298 DLSLQQELGHTVKIPRWEIAYKFPPEEAATVVRDIEWTVGRTGVVTPTAVMDPVQLAGTT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATL+N D +             +D+ +GD VL+ +AG++IP++  +++ +R      
Sbjct: 358 VSRATLNNVDQL-----------TAKDVHIGDTVLLHKAGDIIPEITRVVLEKRPVGISE 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP C   +V            A RC     C AQ + RL+HF SR+A NI GLG
Sbjct: 407 LDIPTHCPSCGKELVHLNGE------VALRCINP-DCPAQIVARLEHFGSRNAMNIMGLG 459

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            +Q+   +        I    D++ L         ++  + GF +  V NL ++I+  R 
Sbjct: 460 PKQIQQLYAKN----FIHHFDDLYKLTSE------ELSQLDGFKEKRVNNLLEAIDNSRK 509

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SLER I  LGI+ VG ++AR+LA+ + +  N  Q                  V  +G+ 
Sbjct: 510 NSLERLINGLGIQGVGTKMARTLAEKFGTMDNLMQTT----------IEEFDAVDTIGET 559

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRH 664
           +A  +  F+Q+      ++ L            +  ++     + KK+V TG L++  R+
Sbjct: 560 LANNLATFFQSDVAQNMIDELKAVGVNMEYLGVKPAESPDGYYKGKKVVLTGKLEQYTRN 619

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + +E +  LGA V+  +S+KTDI+I G + GSKL KAQ LG++I++E + +   +Q
Sbjct: 620 ELKERLISLGADVAGSVSKKTDILIAGADAGSKLTKAQALGIEILDETEAIAKFEQ 675


>gi|94984803|ref|YP_604167.1| DNA ligase, NAD-dependent [Deinococcus geothermalis DSM 11300]
 gi|122986680|sp|Q1J0I6|DNLJ_DEIGD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94555084|gb|ABF44998.1| DNA ligase, NAD-dependent [Deinococcus geothermalis DSM 11300]
          Length = 684

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 220/704 (31%), Positives = 349/704 (49%), Gaps = 46/704 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +   +L  EI  H+  YY+   P I D EYD L R   A+  A P+       N P   +
Sbjct: 22  EHYLALRAEIERHNRAYYELDAPEIPDDEYDRLVRELRALEAAHPEWVAE---NSPAQTV 78

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-IFFTLEPKIDGT 137
           GG  + +   V H  P  SL+ +++ E+L ++  ++ R      D+    +T E KIDG 
Sbjct: 79  GGAPSSAFLPVEHPTPMTSLDNVFSDEELAEWQEKLARALNLPPDHDGFTYTGELKIDGL 138

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + Y  G   +AA RG+G  GE V+  +  IP IPR L     E+ EVRGEVY+S+ D
Sbjct: 139 SVNLYYADGVLQWAATRGNGRVGEMVTEQVLTIPGIPRALPGLTGEL-EVRGEVYLSRAD 197

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F A N     +G     NPRN A+G LR+ +P    TR+L    + LGK   +  + Q E
Sbjct: 198 FAAFNARAEELGLPLLKNPRNGAAGALRQKDPEVTRTRHLKALFYSLGKHDGVPVRTQGE 257

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L  +   GFP +              Y+  M + R+   +D DG V K+D  +LQ + G
Sbjct: 258 VLAWLAEQGFPTSRYSETFTGLQAAADYHRRMTAQRAQFEFDADGTVLKLDSLALQAEAG 317

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW +++KF  ++  T L  I + +GRTG L P+A L P  I G+ ++ ATLHNE
Sbjct: 318 STSRAPRWAVAYKFPVEEVETVLESITVNVGRTGKLAPLAHLSPRLIEGSTVSKATLHNE 377

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+ L           D+R+GD V+V+++G VIP+++ +++ +R PDA P+ FP+ CP 
Sbjct: 378 DYIRDL-----------DLRIGDTVVVRKSGGVIPQIMRVVLEKRPPDAAPYRFPTHCPE 426

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C   VVR          A   C    AC AQQ ERL++FVSR A ++ G+G++ ++    
Sbjct: 427 CGHEVVRAEG------DANTYCPNP-ACPAQQFERLRYFVSRGAMDVRGVGEKLIEQLLA 479

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +      +   AD++ L   Q  S      +   G+    N+   +   +   L R I +
Sbjct: 480 T----GLVHDAADLYQLTAEQLAS------LERSGEKKAANILAQLEASKTRPLWRLINA 529

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI HVG   A++LA+ + +                    S+  VP +G  IAQ++    
Sbjct: 530 LGINHVGERNAQALARAFGTLDALLAATP----------ESIEAVPGLGRTIAQSVSAAL 579

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            +P     +  L +     +          +     V TGTL +  R + +  +   GA 
Sbjct: 580 ADPSMQDLIRRLRERGLKPVEETAPRGD-ALAGLSFVLTGTLSR-PRDEIKARLESAGAR 637

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           V+  +++KT  +I G+  GSKL++A++LG+ +++E     LL++
Sbjct: 638 VTGSVTKKTSYLIAGEEAGSKLDRARELGIPVLDEAGLGALLEE 681


>gi|227893041|ref|ZP_04010846.1| DNA ligase [Lactobacillus ultunensis DSM 16047]
 gi|227865154|gb|EEJ72575.1| DNA ligase [Lactobacillus ultunensis DSM 16047]
          Length = 667

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 210/714 (29%), Positives = 363/714 (50%), Gaps = 50/714 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +++++A+KE +SL  +++   D YY    P + D+ YD    R   +   FP++   
Sbjct: 1   MTEITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELERQFPEIV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GG+++    KV H IP LS+  +++ ++L++F  R+ +       + + +
Sbjct: 59  -TPDSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKDELKEFDQRMQKLVG----HPVEY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ YE GK V A+ RG+G+ GEDV+A  R I  IP+ L   +    EVR
Sbjct: 114 NVELKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANARYIADIPQTLPEPL--TTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN+E    G   + NPRNAA+G LR+L+P    R              
Sbjct: 172 GECYMGKKAFAKLNEEREEQGLTVFVNPRNAAAGSLRQLDPKVTKRRQLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ + +M  LGF  N   R+  T   I ++ +E  + R++L Y IDG+V K+D+
Sbjct: 232 EGIISQHQAIDRMHELGFHTNETGRKLATLDEIFAFIDEYTAKRNSLTYGIDGIVLKIDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +++++LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  +
Sbjct: 292 LNIEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN DY+             + +R+GD V + +AG++IP++ ++++ +R  D++ +
Sbjct: 352 ARASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVMAKRPADSEVY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG 
Sbjct: 401 HIPDTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +      +     +   AD++ L             +  F + S+ NL  +I+  +  
Sbjct: 454 KIVKQLIAKD----LVHNVADLYHLNADDL------AQLDHFKEKSINNLLTAIDNSKKN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  I  LGI HVGA+ AR +A+ + + +                   +  +  +G  I
Sbjct: 504 SVELLITGLGIDHVGAKAARLIAQKFKNLEKIMSL----------GVQDIASIDTIGMTI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+++  ++  P     VE L +            E    +  ++K +V TG L+   R +
Sbjct: 554 AESMTTYFAQPEAQKLVEELRESGLNMDYLGEDEEVAPDNPFKDKTVVLTGKLEHYTRSE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             + +  LGA V+  +S +TD +I G + GSK  KAQQLGV ++ EE  +  ++
Sbjct: 614 FTKKLQALGAKVTGSVSHRTDYVIYGKDAGSKYNKAQQLGVPLLTEEDAIAQIE 667


>gi|312194886|ref|YP_004014947.1| DNA ligase, NAD-dependent [Frankia sp. EuI1c]
 gi|311226222|gb|ADP79077.1| DNA ligase, NAD-dependent [Frankia sp. EuI1c]
          Length = 755

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 223/715 (31%), Positives = 346/715 (48%), Gaps = 61/715 (8%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           +  H   YY  + P + D+EYD L R   A+   +P L     P+ P  K+    +    
Sbjct: 44  LDEHAYRYYVLAAPTVSDAEYDVLYRELVALEERYPAL---RTPDSPTQKVTETPSELFE 100

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
            VTH    LSL+  ++ ++ + +  R  +     + +   +  E KIDG  + + YE G 
Sbjct: 101 PVTHLERLLSLDNAFDEDEFQAWAARATK-----ETSVAAWLCELKIDGLAVDLVYEDGV 155

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMI 206
            V AA RGDG  GED++A IR + ++P  L     P ++EVRGEV+     F+ALN+ ++
Sbjct: 156 LVRAATRGDGRVGEDITANIRTLRSVPARLRGPNVPALLEVRGEVFFPVAAFVALNESLV 215

Query: 207 AVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
           A G+KPYANPRN A+G LR+ +P    +R L  +VHGLG         Q    + +  LG
Sbjct: 216 ADGKKPYANPRNTAAGSLRQKDPQVTASRGLAMYVHGLGARRGFDPPSQSAAYEALAELG 275

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
            P++   R       +++Y  E    R  + ++IDG+V KVD+ + Q +LG  +++PRW 
Sbjct: 276 LPISPRYRVVGDVDAVLAYIREWGEHRHDVEHEIDGVVVKVDDLATQGRLGATSKAPRWA 335

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I++K+  ++ +TRL  I++ +GRTG +TP   LEPV + G+ +  ATLHN D +K     
Sbjct: 336 IAYKYPPEEVTTRLKSIEVNVGRTGRVTPFGVLEPVTVAGSTVGLATLHNADQVK----- 390

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  + + +GD +++++AG+VIP++V  +V+ R    + F FP+ CP C + +VR  
Sbjct: 391 ------AKGVLIGDMIILRKAGDVIPEIVGPVVDLRDGTEREFVFPTHCPECGTELVRPE 444

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                   A  RC   + C AQ+ E + H  SR A +I+GLG +      +    A  ++
Sbjct: 445 GE------ADTRCPNTVGCPAQRREAIIHLASRGALDIDGLGGESAIDLIE----AGRVK 494

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGD--------------------VSVTNLYDSINKR 545
             AD+F L  R  T     E I    D                         +   I   
Sbjct: 495 DIADVFHLDERSFTGMPLFERIETVRDENGKLVKGPDGKALRRSVLGKKAEQVLKGIEAA 554

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R+  L R +  L IRHVG   A++LA+   S                     L  V  VG
Sbjct: 555 RHRPLWRLLVGLSIRHVGPSAAQALARELRSTDAIRAA----------SLEELAVVDGVG 604

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             IA A+VE++ +PR++  VE L                  +    +V TG+L+   R  
Sbjct: 605 PTIAAAVVEWFADPRHLDLVERLRAGGVTLADEGADEGPRPLAGVTVVITGSLEGYTRDS 664

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A E V  LG  VS  +S+KT  +I G+N G+K +KA  L V I++E     LL +
Sbjct: 665 ATEAVQNLGGKVSGSVSKKTSFVIAGENAGTKYDKAVSLKVPILDEAGLRVLLTE 719


>gi|313123177|ref|YP_004033436.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279740|gb|ADQ60459.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 671

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 208/714 (29%), Positives = 358/714 (50%), Gaps = 49/714 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S+E+A++E+  L  ++      YY+   P++ D  YD    R   +  A+P+L      +
Sbjct: 4   SLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYPELK---SAD 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
               ++GGE+N  L KV H +P LS+  +++ E+L +F  R+ +       + + + +E 
Sbjct: 61  SITQRVGGEVNSDLPKVEHQVPMLSMGDVFSKEELAEFDQRVQKAIG----HPVAYNVEL 116

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  +++ YE+G+   A+ RG+G  GEDV+  ++ I  +P+ L   I    EVRGE Y
Sbjct: 117 KIDGLSLSLEYEEGRLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGECY 174

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +SK  F  LN E    G   +ANPRNAA+G LR+L+P    +                  
Sbjct: 175 MSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAGID 234

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q++ + +M  LGF  N   R+      +  Y +E    R +LPY IDG+V KVD+ +LQ
Sbjct: 235 SQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDDLALQ 294

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G  +  A+
Sbjct: 295 ADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGTTVARAS 354

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D +  L           D+R+GD V + +AG++IP++ ++++++R  D+ P+  P+
Sbjct: 355 LHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPYEVPT 403

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +V            A RC    +C AQ  E + HF SR A NI GLG + + 
Sbjct: 404 KCPSCGEDLVHLNEE------VALRCINP-SCPAQIEEGITHFASRQAMNIAGLGPKIVK 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                +     +   AD++ L     +       +  F + S+ NL  +I++ R  S+E 
Sbjct: 457 QLIAKD----LVHNVADLYYLTADDLS------QLEHFKEKSINNLLAAIDQSRKNSVEL 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGI +VG + A+ +A+ + +    A                L  +  +G  IA+++
Sbjct: 507 VLFGLGIDNVGRKAAQLIAQKFKNMSKIASA----------SVQELTAIDTIGMTIAESL 556

Query: 613 VEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
             ++Q       +  L +        G   +   +  + K +V TG L    R +  + +
Sbjct: 557 TAYFQQEEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAEFTKKL 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             LGA V+  +S+KTD ++ G++ GSKL KA+ L +  + E + +  +++ +T 
Sbjct: 617 QALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDTE 670


>gi|296140594|ref|YP_003647837.1| DNA ligase, NAD-dependent [Tsukamurella paurometabola DSM 20162]
 gi|296028728|gb|ADG79498.1| DNA ligase, NAD-dependent [Tsukamurella paurometabola DSM 20162]
          Length = 688

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 230/717 (32%), Positives = 360/717 (50%), Gaps = 44/717 (6%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           + L+ +  R     L +E+  H   YY    P++ D E+DAL +R  A+  AFP+LA   
Sbjct: 3   KELTEDDRRA-WQELAEEVRGHQFRYYVQDAPVLSDGEFDALLKRLQAMEDAFPELAV-- 59

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P   +GG  +     V H     SL+ +++  +LR++I R+ R   +    S+ F 
Sbjct: 60  -PDSPTKLVGGGFSTEFTAVDHLERMYSLDNVFDEGELREWIARVQRDVGE----SVTFL 114

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEII 185
            E KIDG  + + YE G  V  A RGDG +GEDV+   R +  +P  L+      IP ++
Sbjct: 115 TELKIDGVALNLVYEDGALVRGATRGDGRTGEDVTLNARTLRDVPHRLTPSDEFPIPAVL 174

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG 244
           EVRGEV+    DF  LN  ++A G+ P+ANPRN+A+G LR+ NP     R L    HGLG
Sbjct: 175 EVRGEVFFRLADFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPQITSRRKLGMICHGLG 234

Query: 245 KTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           +    +     +E  + +   G PV+   +Q      +V         R    ++IDGLV
Sbjct: 235 RIEGGWSPASLHEAYRALAAWGLPVSAHTKQVVGADAVVDRVFYWGEHRHDPEHEIDGLV 294

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVDE +LQ++LG  +R+PRW I++K+  ++ +T+LLDI + +GRTG +TP A + PV +
Sbjct: 295 VKVDEIALQRRLGATSRAPRWAIAYKYPPEEVTTKLLDIRVNVGRTGRVTPYAYMAPVTV 354

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ +  ATLHN   ++            + + +GD V +++AG+VIP+V+  +V+ R  
Sbjct: 355 AGSTVEFATLHNASEVQR-----------KGVLIGDTVTIRKAGDVIPEVLGPVVDLRDG 403

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             + F  P  CP C + +       + +  A  RC     C AQ  ERL +   R  F+I
Sbjct: 404 TEKAFVMPVTCPECGAALA-----PSKEGDADIRCPNTETCPAQLRERLFYLAGRTCFDI 458

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG +           +  +    D+F+L     T      N  G    +   L  +++
Sbjct: 459 EGLGYEAATALT----ASPVLHNEGDVFSLTEADLTQVPLFTNDGGALSANAQRLLTNLD 514

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +   L R + +L IRHVG   AR+LA+   S +  A            D   L  V  
Sbjct: 515 VAKTKPLWRVLVALSIRHVGPSAARALAQELGSLEAIAAA----------DVDQLAEVDG 564

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           VG +IA+A+VE++    +   VE             + +V   +E   +V TG+LQ   R
Sbjct: 565 VGRVIAEAVVEWFTVGWHREIVEKWRAAGVTMEDERDASVPRNLEGLSIVVTGSLQNFSR 624

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             A+E +   G   ++ +S+KT  ++VGD PGSK +KA+QLGV +++E  F  LL +
Sbjct: 625 DGAKEAILVRGGKAASSVSKKTAFVVVGDAPGSKADKAEQLGVPVLDEAGFEKLLAE 681


>gi|218131107|ref|ZP_03459911.1| hypothetical protein BACEGG_02712 [Bacteroides eggerthii DSM 20697]
 gi|217986811|gb|EEC53144.1| hypothetical protein BACEGG_02712 [Bacteroides eggerthii DSM 20697]
          Length = 666

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 221/707 (31%), Positives = 353/707 (49%), Gaps = 49/707 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++ +  L  ++  H+  YY  + P I D E+D + R    +    P+    +D N P  
Sbjct: 3   IKERIDQLRTDLHRHNYNYYVLNTPEISDKEFDDMMRELQDLEKEHPEY---QDENSPTM 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G ++N +  +VTH  P LSL   ++  ++  F  R+ +      +       E K DG
Sbjct: 60  RVGSDLNKNFTQVTHKYPMLSLGNTYSENEVTDFYDRVKKAL----NEDFEICCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
           T I++ YE GK V A  RGDG  G+DV+  ++ I TIP VL  N  PE  E+RGE+ +  
Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNNYPEHFEIRGEILMPW 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
             F  LN E  A     +ANPRNAASG L+  N   +               E+   G Y
Sbjct: 176 EVFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGEELPCDGHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ     GF ++   ++ ++   +  Y     + R  LP   DG+V KV+    QK L
Sbjct: 236 ENLQTAAGWGFKISEHTKKTHSLEEVFEYIRYWDTERKNLPVATDGIVLKVNSMRQQKSL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA L+PV + G ++  A+LHN
Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNRVTYQVGRTGAITPVANLDPVQLSGTIVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434
            D I+GL           D+ +GD V V++ GE+IPK+  +  + R     +   F + C
Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARGMLIGEKVKFITHC 404

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S++VR          AAH C    AC  Q   +++HF+SR A NI+GLG + +D F
Sbjct: 405 PECGSKLVRYEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDTF 458

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I+  AD++ L      +      +   G+ S  N+   I   + +  ER +
Sbjct: 459 YR----LGLIKDTADLYQLTAEDIKN------LDRMGEKSAENIIKGIKASKEVPFERVL 508

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ +AK + + +               D   L  +  +G+ IAQ+I+ 
Sbjct: 509 FALGIRFVGETVAKKIAKSFNNIEELENA----------DLEKLTSIDEIGEKIAQSILI 558

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++ +P N+  +E L         + E     + ++  + +V +G      R + ++ + +
Sbjct: 559 YFSSPLNVSLIERLKSAGLQLYRKEEDLNEYTDKLAGQSIVISGVFTHHSRDEYKDLIEK 618

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G      +S KT  I+ G+N G SKLEKA +LG+KI++E++FL L+
Sbjct: 619 NGGKNVGSISTKTSFILAGENMGPSKLEKAHKLGIKIISEDEFLTLI 665


>gi|325684644|gb|EGD26799.1| NAD-dependent DNA ligase LigA [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 671

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 208/714 (29%), Positives = 358/714 (50%), Gaps = 49/714 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S+E+A++E+  L  ++      YY+   P++ D  YD    R   +  A+P+L      +
Sbjct: 4   SLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYPELK---SAD 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
               ++GGE+N  L KV H +P LS+  +++ E+L +F  R+ +       + + + +E 
Sbjct: 61  SITQRVGGEVNSDLPKVEHQVPMLSMGDVFSKEELAEFDQRVQKAIG----HPVAYNVEL 116

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  +++ YE+G+   A+ RG+G  GEDV+  ++ I  +P+ L   I    EVRGE Y
Sbjct: 117 KIDGLSLSLEYEEGRLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGECY 174

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +SK  F  LN E    G   +ANPRNAA+G LR+L+P    +                  
Sbjct: 175 MSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAGID 234

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q++ + +M  LGF  N   R+      +  Y +E    R +LPY IDG+V KVD+ +LQ
Sbjct: 235 SQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDDLALQ 294

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G  +  A+
Sbjct: 295 ADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGTTVARAS 354

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D +  L           D+R+GD V + +AG++IP++ ++++++R  D+ P+  P+
Sbjct: 355 LHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPYEVPT 403

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +V            A RC    +C AQ  E + HF SR A NI GLG + + 
Sbjct: 404 KCPSCGEDLVHLNEE------VALRCINP-SCPAQVEEGITHFASRQAMNIAGLGPKIVK 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                +     +   AD++ L     +       +  F + S+ NL  +I++ R  S+E 
Sbjct: 457 QLIAKD----LVHNVADLYYLTADDLS------QLDHFKEKSINNLLAAIDQSRKNSVEL 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGI +VG + A+ +A+ + +    A                L  +  +G  IA+++
Sbjct: 507 VLFGLGIDNVGGKAAQLIAQKFKNMSKIASA----------SVQELTAIDTIGMTIAESL 556

Query: 613 VEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
             ++Q       +  L +        G   +   +  + K +V TG L    R +  + +
Sbjct: 557 TAYFQQEEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAEFTKKL 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             LGA V+  +S+KTD ++ G++ GSKL KA+ L +  + E + +  +++ +T 
Sbjct: 617 QALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDTE 670


>gi|332686164|ref|YP_004455938.1| DNA ligase [Melissococcus plutonius ATCC 35311]
 gi|332370173|dbj|BAK21129.1| DNA ligase [Melissococcus plutonius ATCC 35311]
          Length = 678

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 238/719 (33%), Positives = 384/719 (53%), Gaps = 52/719 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++ +A      L+++++ +   YY   KP + D  YD L +    I  A+PDL  S   
Sbjct: 7   LTLTEATDRADELKEQLNQYSYEYYVQDKPSVEDYVYDRLYKELSEIETAYPDLITS--- 63

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     KV H     SL   ++ ED+  F  RI+R      D    +  E
Sbjct: 64  DSPTQRVGGKILPGFEKVHHDSTMYSLNDGFSKEDIYNFDERIHRL----TDQPFTYCCE 119

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++RY+ G+ V  A RGDG  GE+++  ++ + +IP  L+ +I   IEVRGE 
Sbjct: 120 LKIDGLAISLRYKNGELVLGATRGDGTIGENITENLKTVRSIPLRLNKSIS--IEVRGEC 177

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ LN E    G   +ANPRNAA+G LR+L+      R LN F++ +     + 
Sbjct: 178 YMPKTSFVRLNQEREEEGCDIFANPRNAAAGSLRQLDSRITAKRNLNTFLYTVADFGSMT 237

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q++ L ++  +G   N   R   T   + S+  E    R+ LPY+IDG+V KV+EFS
Sbjct: 238 AKNQFDALNELTTIGIRTNPEKRLCQTIDEVWSFIEEYHEKRNELPYEIDGIVIKVNEFS 297

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG   ++PRW I++KF  ++A T + +I+  +GRTG++TP A ++PV I G  ++ 
Sbjct: 298 EQNKLGFTVKAPRWAIAYKFPPEEARTTVNEIEWTVGRTGVVTPTAIMDPVRIAGTTVSR 357

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D+I+            +DIR+ D V++ +AG++IP+V   +V  R  ++ P+  
Sbjct: 358 ASLHNFDFIQM-----------KDIRLKDEVIIYKAGDIIPEVAKALVETRTNESVPYQA 406

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+CQS +V            A RC     C AQ  E L HFVSR+A NI GLG + 
Sbjct: 407 PSHCPVCQSELVHLDEE------VALRCINPK-CPAQIKEGLNHFVSRNAMNIAGLGPRI 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L   ++ +     ++  AD++ +   Q  +      +    + S  N+Y +I   +N S+
Sbjct: 460 LAQLYEKK----LVKDVADLYFVTEEQLMT------LEKIKEKSANNIYQAIAASKNNSV 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E  IF LGIRHVGA+ A+ LA+++   +  +Q           +  S++ +  +G+IIA+
Sbjct: 510 EHLIFGLGIRHVGAKAAKILAEHFGDLKTLSQA----------NQESIMVLDSIGEIIAE 559

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG----RHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++V +++       +  L K             + N  S  +NK +V TG L    R +A
Sbjct: 560 SVVAYFEKIEVQELLVELEKAGINFKYTGTRPEQLNGDSFFKNKTVVLTGKLTNYTREEA 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           +E +  LG  V+  +S+KTDI+I G+  GSKL  A++L V + +E Q    L+ ++ T+
Sbjct: 620 KEQIESLGGNVTNSVSKKTDIVIAGEASGSKLAAAKELEVTVWDENQLTEALENHHPTV 678


>gi|228476354|ref|ZP_04061055.1| DNA ligase, NAD-dependent [Staphylococcus hominis SK119]
 gi|228269637|gb|EEK11143.1| DNA ligase, NAD-dependent [Staphylococcus hominis SK119]
          Length = 667

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 242/712 (33%), Positives = 379/712 (53%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +  ++ L   ++ +   YY    P + DSEYD L R    I +A P+L      + 
Sbjct: 1   MDNIQNRVNELHDLLNQYSYEYYVKDNPSVPDSEYDKLLRELIDIENAHPELKTD---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N E+LR+F  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHETPMLSLGNAFNEEELRRFDERIREHIG-----NVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  +   +   +EVRGE Y+
Sbjct: 113 IDGLAVSLKYEDGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--VEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LNDE      +P+ANPRNAA+G LR+L+P     R L+ F++ +   ++  A 
Sbjct: 171 PRRSFMRLNDEREKNEEQPFANPRNAAAGSLRQLDPKLAAKRKLSVFLYSVNDFTDFSAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q + L ++  LGF  N+   +     G++ Y  +    R  L YDIDG+V KV++   Q
Sbjct: 231 TQSDALDELDRLGFKTNHERARVEDIEGVLEYIKKWTKQREQLSYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T L DI++ IGRTG++TP A LEP+ + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTELKDIELSIGRTGVVTPTAILEPIRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED IK            RDIR+GD V+VK+AG++IP+VV  I++ R  DA+P+  P+
Sbjct: 351 LHNEDLIK-----------ERDIRIGDSVIVKKAGDIIPEVVRSIIDRRPNDAKPYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGNKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +  +     I+   DIF L +           +   G   V NL  +I   +  SLE 
Sbjct: 453 QLYHHQ----LIKDVGDIFYLTKEDL------LPLERMGTKKVENLLSAIEHAKQNSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+GA+ ++ LA+ + +     +               L+ +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGAKASQILAEKFETMDRLLKVTE----------EELVAIHDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668
           V +  N      +E L  +    I +  K+       E +NK +V TG LQ++ R +A  
Sbjct: 553 VTYLDNEDIKALIEKLKDKNVNMIYKGVKSSEIEGHPEFQNKTIVLTGKLQQMTRKEATT 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++   GA V++ +++ TD++I G++ GSKL KA+Q G +I +E QF+    +
Sbjct: 613 WLEMQGAKVTSSVTKSTDLVIAGEDAGSKLSKAEQFGTEIWSESQFIEKQNE 664


>gi|260102794|ref|ZP_05753031.1| DNA ligase [Lactobacillus helveticus DSM 20075]
 gi|260083398|gb|EEW67518.1| DNA ligase [Lactobacillus helveticus DSM 20075]
          Length = 689

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 215/720 (29%), Positives = 369/720 (51%), Gaps = 51/720 (7%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
            Q + +  +++++A+KE +SL  ++    D YY    P + D+ YD    R   +  AFP
Sbjct: 17  NQEVKMAKITLDEAKKEAASLRTKLDEWADAYYSKDAPEVEDNVYDQSYNRLLELEKAFP 76

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           ++     P+    ++GGE++    KV H IP LS+  +++ ++L++F  R+ +       
Sbjct: 77  EIV---TPDSITQRVGGEIDSDFTKVNHPIPMLSMGDVFSKDELKEFDQRMQKLVG---- 129

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
           + + + +E KIDG  +++ Y+ GK V A+ RG+G+ GEDV+A  R I  IP+VL   +  
Sbjct: 130 HPVEYNVELKIDGLSLSLEYQDGKLVRASTRGNGYIGEDVTANARYIADIPQVLPEPL-- 187

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243
            IEVRGE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+P    +         
Sbjct: 188 TIEVRGECYMGKEAFAKLNQEREDEGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYT 247

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                     Q++ +++M  LGF  N   R+      +  + +E  + R++L Y IDG+V
Sbjct: 248 WVNPPREITSQHQAIERMHELGFHTNETGRKLANLDEVFDFIDEYTAKRNSLTYGIDGIV 307

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVD+ SL++QLG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV +
Sbjct: 308 LKVDDLSLEQQLGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQL 367

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  A+LHN DY+             + +R+GD V + +AG++IP++ ++++++R  
Sbjct: 368 AGTTVARASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLSKRPA 416

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D+ P+  P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A NI
Sbjct: 417 DSVPYEIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGIIHFASRPAMNI 469

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            GLG + +      +     +   AD++ L             +  F + S+ NL  +I+
Sbjct: 470 AGLGPKIVKQLIAKD----LVHNVADLYHLTEDDL------AQLDHFKEKSINNLLTAID 519

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +  S+E  I  LGI HVGA+ AR +A+ + + +                   +  +  
Sbjct: 520 NSKKNSVELLITGLGIDHVGAKAARLIAQKFKNLEKIMSL----------GVQDIASIDT 569

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQ 659
           +G   A+++  ++  P     +E L +             E+   +  ++K +V TG L+
Sbjct: 570 IGMTTAESMTTYFAQPEAQKLIEELRESGLNMDYLGADEPEEAPDNPFKDKTVVLTGKLE 629

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R +  + +  LGA V+  +S KTD +I G + GSK  KA+QLGV ++ EE+ +  ++
Sbjct: 630 HYTRSEFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYNKAEQLGVPLLTEEEAIAQIE 689


>gi|89891625|ref|ZP_01203129.1| DNA ligase [Flavobacteria bacterium BBFL7]
 gi|89516172|gb|EAS18835.1| DNA  ligase [Flavobacteria bacterium BBFL7]
          Length = 684

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 224/716 (31%), Positives = 361/716 (50%), Gaps = 50/716 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++ SL  E+  H+  YY    P I D E+D    +   +  A P+     D   P  +
Sbjct: 4   KEQIQSLRDELREHNYNYYVNDNPTISDFEFDKKLEQLKTLEAAHPEF---YDATSPSVR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+  +   + H     SL+  ++IEDLR +  RI +      D  I +T E K DG 
Sbjct: 61  VGGEVTKNFNTIKHINRMYSLDNSYSIEDLRDWEKRIKKIV----DGEIQYTCELKYDGA 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKN 196
            I++ YE GKFV A  RGDG+ G++V+A +R I ++P  L  +  P   E+RGE+ +  +
Sbjct: 117 SISLHYENGKFVQAVTRGDGNQGDEVTANVRTIKSVPLQLKGDDVPAKFEIRGEIVLPWD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F  +N+E    G   Y NPRN ASG L+  +  ++ +     +        +  K Q++
Sbjct: 177 GFHKMNEERADQGLDLYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQLAGENLPVKSQFD 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L   R  GF      +  ++   +  + N     R  LPY+ DG+V KV+    Q +LG
Sbjct: 237 SLTLARKWGFKAPQESKLVHSIEEVFEFINHWDVARKELPYETDGVVIKVNSLDQQDELG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A++P+W +++KFA +Q STRL +I  Q+GRTG +TPVA LEPV I G  +  A+LHN 
Sbjct: 297 FTAKAPKWAMAYKFAAEQVSTRLEEITYQVGRTGSITPVANLEPVEISGTTVRRASLHNA 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DIRVGD V V++ GE+IPK+V + + +R  ++ P  + + CP 
Sbjct: 357 DQIEKL-----------DIRVGDEVYVEKGGEIIPKIVAVELTKRPDNSTPTVYATHCPE 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + +VR          A H C   +AC  Q   R++HF+SR A +I+G+G + +     
Sbjct: 406 CHTELVRTEG------DAKHYCPNDMACPPQVKGRIEHFISRKAMDIDGIGAETVGQLVD 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  I   AD++ L   Q      +  +      S  N+ + I   + +  ER +F 
Sbjct: 460 ----AGFINNYADLYDLTVEQ------VLPLERMAQKSAENMINGIEASKQVPFERVLFG 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFA-----------QEINNIIAHNNDDWLSLIRVPLVG 605
           LGIR+VG  +A+ LAK+Y +                    ++ +  +     L  VP +G
Sbjct: 510 LGIRYVGETVAKKLAKHYKNVDALLNMPAEPDKSSIDLFADVSSAADKKMEELTAVPEIG 569

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQR 663
           + IAQ++VEF QN   +  +E L              +  + ++  K  V +G  + + R
Sbjct: 570 ESIAQSLVEFIQNEDQMAIIERLKNTGLQFALSEEQLEGQTDKLAGKSFVISGVFE-MSR 628

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           +  ++ V   G   S+ +S KTD +I GD  G SKLEKA++LG+ +++E++FL ++
Sbjct: 629 NDLKKLVEDNGGKNSSSISSKTDYLIRGDKMGPSKLEKAEKLGITMISEQEFLAMI 684


>gi|331702040|ref|YP_004398999.1| DNA ligase [Lactobacillus buchneri NRRL B-30929]
 gi|329129383|gb|AEB73936.1| DNA ligase [Lactobacillus buchneri NRRL B-30929]
          Length = 675

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 235/711 (33%), Positives = 377/711 (53%), Gaps = 53/711 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E +S +QA  +   L ++++   D YY Y  P + D+ YD   ++  A+ + FP +    
Sbjct: 4   ENMSEQQAAAKAGDLRKQLNQWADEYYTYDAPSVEDAVYDQTYQQLVALENQFPQIV--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  K+G        KV H IP LSL  +++ E+L +F+ R      + D  +  + 
Sbjct: 61  TPDSPTQKVGDHTLPGFTKVNHEIPMLSLGDVFSKEELAEFVDR----LSENDSVAFDYN 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I +RYE G FV  + RG+G  GED++  ++ I +IP    L  P  IEVRG
Sbjct: 117 CELKIDGLAINLRYENGVFVQGSTRGNGQIGEDITRNLKTIKSIP--QKLTRPINIEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           E Y+ K  F  LN++    G +P+ANPRNAA+G LR+L+P    +R L+ F++ +    +
Sbjct: 175 ECYMPKESFAKLNEQRQLDGEEPFANPRNAAAGSLRQLDPRVTRSRKLSTFMYNVADIDD 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +  Q  ML +++ LGF +N   + A+    I +Y ++ K +R  LPY IDG+V KV+ 
Sbjct: 235 LQSDTQSGMLAELKELGFTINPDFKVAHNMADIDNYVDKYKDLRDGLPYGIDGIVIKVNS 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ+ LG   + PRW I++KF  ++  T + DI+  +GRTG++TP A ++PV + G+ +
Sbjct: 295 LPLQRSLGATVKVPRWAIAYKFPPEEVQTIVRDIEWTVGRTGVVTPTAVMDPVTLAGSTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN DY+             +DIRVGD V + +AG++IP++   + ++R  ++Q +
Sbjct: 355 SRASLHNPDYL-----------AEKDIRVGDTVKLHKAGDIIPEISQYLPDKRPANSQAY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C S +V            A RC     C AQ  E L HF SRDA NI+GLG 
Sbjct: 404 EIPTQCPSCGSTLVHLDQE------VALRCINPQ-CPAQLKEGLTHFASRDAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +   F+       +   A ++ L   Q  +      +  FG+ S T L  +I+  R+ 
Sbjct: 457 KIIAQLFEK----HMVSDVAGLYDLSFDQLLT------LDKFGEKSATKLLAAIDNSRSN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S ER ++ LGIRHVG + AR +A+ + +     Q               +  +  +G II
Sbjct: 507 SCERLLYGLGIRHVGIKAARLIAQRFKNIDKVMQA----------SAQDIAEIATMGMII 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI-----GRHEKNVSSEIENKKLVFTGTLQKIQR 663
           A ++V ++  P +   ++ L +                   S    KK V TG LQ I R
Sbjct: 557 ADSVVTYFSMPESKQLIDQLKQVGVNMDYLGVTDEQLAESDSFFTGKKFVLTGKLQNITR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
             A +++   GA VS+ +S+ TDI++VG++PGSK +KA+ LG++  +E +F
Sbjct: 617 PDATQWLEDHGAKVSSSVSKNTDIVVVGEDPGSKYDKAKSLGIQTWDEARF 667


>gi|224543223|ref|ZP_03683762.1| hypothetical protein CATMIT_02423 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523856|gb|EEF92961.1| hypothetical protein CATMIT_02423 [Catenibacterium mitsuokai DSM
           15897]
          Length = 664

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 237/710 (33%), Positives = 380/710 (53%), Gaps = 52/710 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +S E     L+ L+  ++ ++  YY    P + D EYD L      I    P    +
Sbjct: 1   MSKMSFE----RLNELKALLNKYNYEYYVQDNPTVSDQEYDRLMEELIRIEQVNPAWITT 56

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P  ++GGE+     KVTH    +SL  I+N +++  F  R+          +  +
Sbjct: 57  ---DSPSQRVGGEVLEGFKKVTHQRMMMSLGDIFNEDEVYTFNDRVTDVI-----PNPEY 108

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E K+DG  +++ Y+ G   Y A RG+G  GED++  ++ I +IP  L ++    +EVR
Sbjct: 109 ICELKLDGLSVSLVYQDGVLQYGATRGNGTVGEDITHNVKTIRSIP--LHIDFKGPLEVR 166

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTS 247
           GE+ + K     LN+E    G   +AN RNAA+G +R+L+     +  L+ F++ + + S
Sbjct: 167 GEIIMPKKALERLNEERTDAGLPLFANCRNAAAGSIRQLDSRVAAKRGLDAFLYHVPEAS 226

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           ++ A   YE L+K++ LGF  N   R+  T   + +Y  E+  +R TLPYDIDG+V KV+
Sbjct: 227 QLNASTHYECLEKIKDLGFKTNPYTRKCKTIQEVWNYIEEVAKLRPTLPYDIDGVVIKVN 286

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   Q++LG  A+ P+W I++KF  ++  T+L DI   IGRTG +TP A LEPV + G+L
Sbjct: 287 DLDSQRKLGYTAKVPKWAIAYKFPAEEVITKLKDIIFTIGRTGQITPNAVLEPVRVAGSL 346

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHNED               +DIR+GD V+V++AG+VIP+VV  I   R     P
Sbjct: 347 VQRATLHNEDNCIR-----------KDIRIGDDVIVRKAGDVIPEVVSAIKERRTGHEIP 395

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F   + CP C S +VR  N       AA+ C     C ++++E+L HF SR+A NI+GLG
Sbjct: 396 FKMITVCPKCGSLLVRKPNE------AAYYCVN-EECDSKKIEKLIHFASREAMNIDGLG 448

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++ F+        +    DI+ L   ++    +I +I GFG  S+  L ++I   + 
Sbjct: 449 DKIIEQFYN----LGFVTCIEDIYHLGVHEK----EIMDIEGFGKKSMDKLLEAIENSKV 500

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SLE+ +F LGI+ +GA++A +LA ++ S                 +++ L  +  VGD 
Sbjct: 501 NSLEKLLFGLGIKGIGAKMADTLAYHFGSMDALLNA----------NYVQLTSIKDVGDT 550

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           IA ++  F +N RN+  +  L +        +  +   +   +K +V TGTL  + R + 
Sbjct: 551 IASSLAAFKRNERNLELIAHLKELGLNMDYLKVRQEGDNPFRDKTVVITGTLTLMTRKQI 610

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++Y+T  GA V+  +S+KTD++IVG+NPGSK  KA  LG+ IMNE  F  
Sbjct: 611 KDYLTSQGANVTGSVSKKTDLVIVGENPGSKYTKAVDLGISIMNESAFKE 660


>gi|326776439|ref|ZP_08235704.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1]
 gi|326656772|gb|EGE41618.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1]
          Length = 743

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 209/736 (28%), Positives = 350/736 (47%), Gaps = 61/736 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
               R++ + L ++I  H   YY   +P++ D+++D   R  +A+    P L     P+ 
Sbjct: 14  PADVREKHALLAEQIEEHRFRYYVKDQPVVSDADFDRQLRSLEALEEEHPSL---RTPDS 70

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G        V H    LSL+  ++ E+L  +  R+ +     D +   F  E K
Sbjct: 71  PTQKVAGPYRTEFTSVEHRERMLSLDNAFDDEELAAWADRVAKDVGTPDHH---FLCELK 127

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG +GED++  +R I  IP  L     P ++E+RGEV+
Sbjct: 128 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGEDIPALVEIRGEVF 187

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  ++A   KP+ANPRNAA+G LR+ +P    TR L+  VHG+G    +  
Sbjct: 188 FPMEDFEELNARLVAADDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAHEGLSI 247

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                    +   G P     +  ++  G+  +       R ++ ++IDG+V K+DE  L
Sbjct: 248 DRLSAAYDLLHAWGLPTARHNKVVDSLAGVREFIAHYGENRHSVEHEIDGVVVKLDEIPL 307

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ +  A
Sbjct: 308 QGRLGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVAGSEVEFA 367

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN++ +K            + + +GD V++++AGEVIP+++  +V+ R    + F  P
Sbjct: 368 TLHNQNVVK-----------AKGVLIGDTVVIRKAGEVIPEILGPVVDLRDGTEKAFEMP 416

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +         +     RC     C AQ  ER+ +   R + +I+  G    
Sbjct: 417 THCPECGTELRPM-----KEADIDLRCPNARTCPAQLRERVFYLAGRKSLDIDHFGYVAA 471

Query: 492 DFFFKSEDPAFSI-RIPADIFTLQRRQQTSTTKI------------------------EN 526
               +  +PA  + +  +D+F+L   Q                                N
Sbjct: 472 AALTRPLEPAEPVLKDESDLFSLTVEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATVFAN 531

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             G    +   + + I   ++  L R +  L IRHVG   A+ LA+ + S +   +    
Sbjct: 532 QQGEPKKNAVAMLEGIAAAKDAPLARVLTGLSIRHVGPVAAQELARQFRSIERIDEATEE 591

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVS 644
            +A              VG  IA ++ +++    +   V    +           E    
Sbjct: 592 ELAAA----------DGVGPTIAASVKQWFAEDWHREIVRKWREAGVRMADEGSDEDEGP 641

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TGTL    R  A+E +  LGA V+  +S+KT  ++VGDNPGSK +KA QL
Sbjct: 642 RPLEGLTVVVTGTLAGHTRDGAKEALQALGAKVAGSVSKKTAFVVVGDNPGSKYDKAMQL 701

Query: 705 GVKIMNEEQFLFLLQQ 720
            V +++E+ F  LL+Q
Sbjct: 702 KVPVLDEDGFAILLEQ 717


>gi|306819948|ref|ZP_07453599.1| NAD-dependent DNA ligase LigA [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551984|gb|EFM39924.1| NAD-dependent DNA ligase LigA [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 675

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 226/706 (32%), Positives = 385/706 (54%), Gaps = 48/706 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           SI++AR ++  L+ EI  ++  YY+   P+I D +YD + R+  ++   +P+L     P+
Sbjct: 3   SIDEARVKIEELKAEIEKNNKLYYEDDNPVISDYDYDMMMRQLISLEEKYPELK---TPD 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P N++GG+      ++ H    +SL   +   +LR F ++I  +       +  + +E 
Sbjct: 60  SPSNRVGGKALSKFEQIRHDRVMMSLSNAFTAGELRDFDSKIKEY-----TKNPKYVVEF 114

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  + ++YEKG  + A  RGDG +GE+V+   + I +IP  L   +   +EVRGE +
Sbjct: 115 KIDGLTLVLKYEKGILISAGTRGDGVTGENVTQNAKTIKSIPLKLKEEV--DVEVRGEAF 172

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           I K  F A+N+  I    K +ANPRN A+G LR+L+P               +       
Sbjct: 173 IPKEVFYAINEMQIENDEKTFANPRNMAAGSLRQLDPKITASRKLDIFIFSVENDIEGKN 232

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +E+L  ++ LG  ++   +  N    +++   +    R  LP++IDG+V K+D+ +L+
Sbjct: 233 SHFELLDYVKDLGMKISPEKKLCNDIEEVIAEIEKWTDKRFDLPFEIDGMVVKLDDIALR 292

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G  +++P+W I++KF  ++  T++ DI +Q+GRTG+LTP A L+ V I G++++ AT
Sbjct: 293 DEIGSTSKAPKWAIAYKFPPEKVRTKVEDIIVQVGRTGVLTPTAILDTVRISGSMVSRAT 352

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNEDYIK            +DI++GD V +++AGE+IP+V ++  N R  + + F  P 
Sbjct: 353 LHNEDYIK-----------EKDIKIGDYVYIQKAGEIIPEVYEVDKNARTGEEREFEMPH 401

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C  + VR  N        A      ++C AQ   ++ HFVS+ A +I+G G++ + 
Sbjct: 402 NCPVCGEKTVRFENE-------ASWKCTNISCKAQLQRKIIHFVSKGAMDIDGFGEKIVI 454

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             F+       I+  +DI+TL+         ++N+   G+ S  NL ++I   +N+SL++
Sbjct: 455 QLFEE----GLIKDISDIYTLKAD------VLKNLERMGEKSANNLINAIENSKNVSLDK 504

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR +GA   + LAK + +     +               L  +  +G+ +A +I
Sbjct: 505 FIFALGIRFIGANAGKVLAKNFDNIGQLMES----------SVDRLTAIDEIGEKMAMSI 554

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           VEF++   N   VE LL      I +   +  S   N K+V TGTL+K +R   Q+ V +
Sbjct: 555 VEFFEIQSNRDLVEKLLALGVNPISKSNSSQKSIFLNLKVVATGTLEKFKRDDIQKIVEE 614

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            G  +S+ +S+KT+ ++ G+  GSKL+KA QLGVK+++E  F  LL
Sbjct: 615 NGGKLSSSVSKKTNFVVAGEAAGSKLDKANQLGVKVISENDFEKLL 660


>gi|291538763|emb|CBL11874.1| DNA ligase, NAD-dependent [Roseburia intestinalis XB6B4]
          Length = 671

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 207/710 (29%), Positives = 357/710 (50%), Gaps = 50/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+   ++  L  +I+YH D YY    P I D E+D L ++   +    P+L      
Sbjct: 1   MTPEE---QIKELRDKINYHSDRYYNQDSPEISDYEFDMLMQQLKKLEKEHPELV---TK 54

Query: 72  NGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P   +GG     +   V H++P LSL+ +++ E++  F+ ++         +   F +
Sbjct: 55  DSPTQHVGGTAKRTAGVLVHHNVPMLSLQDVFSKEEVVDFVEQMKEQL-----DDPEFVV 109

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           E KIDG  + +RYE G    A  RGDG + GEDV+A  + I  + + L    PE +E+RG
Sbjct: 110 EYKIDGLSMALRYENGDLSLALTRGDGVNFGEDVTANAKVISDVKKKLKDK-PEYLEIRG 168

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EVY+   DF  +N++   +G+K +ANPRN A+G LR+L+      R L+ FV  + +   
Sbjct: 169 EVYMKNEDFDRVNEQQELLGKKIFANPRNCAAGTLRQLDSRVTKERKLSMFVFNIQQVRG 228

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      +  + ++  G P+    +   T   + +    +   R  L YDIDG V K++ 
Sbjct: 229 MDIMTHTQGYEFLKRQGIPIIEDYKVCKTADEVWNAITAIGENRGNLGYDIDGAVIKINR 288

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           +S ++ LG  ++ P+W I++K+  ++  T+LLDI++ +GRTG +TP A  EPV + G  +
Sbjct: 289 YSDRELLGNTSKVPKWAIAYKYPPEEKETKLLDIELSVGRTGRITPTAVFEPVRLCGTSV 348

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN+D+I  L           D+ +GD ++V ++GE+IPKV ++   +R    + F
Sbjct: 349 SRATLHNQDFIDDL-----------DVGIGDTIVVYKSGEIIPKVKEVRKEKRPDGWKRF 397

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C ++  R+ +       A  +CT    C AQ    + +FV RDA +I+G G 
Sbjct: 398 MIPDVCPVCGAKTEREKD------TADIKCTSP-NCPAQLERHIINFVGRDAMDIKGFGT 450

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             ++   +       I+  ADIF L+  ++    +        + +   L ++I K +  
Sbjct: 451 VYIEELVR----LGYIKDIADIFELKDHREELIEQGII---GKEKNTDKLLETIEKAKEN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
                +   GI +VG   A+++ K + S  +              D  +L+ V  VG++ 
Sbjct: 504 DAYMLLTGFGIPNVGKAAAKTIMKRFSSILDLENA----------DRDALMEVDDVGEVS 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A  I  F+ + +N   +  L            + + S +  K +V TGTL  + R +A E
Sbjct: 554 ADCIFRFFHDEKNKEMIARLKSLGVNMEAEETETIDSAVSGKTVVITGTLPTLGRKEAAE 613

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            V + G  VS  +S+KTD ++ G++ GSKL KAQ+LG+ ++ E +   LL
Sbjct: 614 LVEKYGGKVSGSVSKKTDYVVAGESAGSKLTKAQELGITVLTEAELFVLL 663


>gi|182435814|ref|YP_001823533.1| NAD-dependent DNA ligase LigA [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|254778153|sp|B1VZW1|DNLJ2_STRGG RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|178464330|dbj|BAG18850.1| putative DNA ligase [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 743

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 209/736 (28%), Positives = 350/736 (47%), Gaps = 61/736 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
               R++ + L ++I  H   YY   +P++ D+++D   R  +A+    P L     P+ 
Sbjct: 14  PADVREKHALLAEQIEEHRFRYYVKDQPVVSDADFDRQLRSLEALEEEHPSL---RTPDS 70

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G        V H    LSL+  ++ E+L  +  R+ +     D +   F  E K
Sbjct: 71  PTQKVAGPYRTEFTSVEHRERMLSLDNAFDDEELAAWADRVAKDVGTPDHH---FLCELK 127

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG +GED++  +R I  IP  L     P ++E+RGEV+
Sbjct: 128 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGEDIPALVEIRGEVF 187

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  ++A   KP+ANPRNAA+G LR+ +P    TR L+  VHG+G    +  
Sbjct: 188 FPMEDFEELNARLVAADDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAHEGLSI 247

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                    +   G P     +  ++  G+  +       R ++ ++IDG+V K+DE  L
Sbjct: 248 DRLSAAYDLLHTWGLPTARHNKVVDSLAGVREFIAHYGENRHSVEHEIDGVVVKLDEIPL 307

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ +  A
Sbjct: 308 QGRLGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVAGSEVEFA 367

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN++ +K            + + +GD V++++AGEVIP+++  +V+ R    + F  P
Sbjct: 368 TLHNQNVVK-----------AKGVLIGDTVVIRKAGEVIPEILGPVVDLRDGTEKAFEMP 416

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +         +     RC     C AQ  ER+ +   R + +I+  G    
Sbjct: 417 THCPECGTELRPM-----KEADIDLRCPNARTCPAQLRERVFYLAGRKSLDIDHFGYVAA 471

Query: 492 DFFFKSEDPAFSI-RIPADIFTLQRRQQTSTTKI------------------------EN 526
               +  +PA  + +  +D+F+L   Q                                N
Sbjct: 472 AALTRPLEPAEPVLKDESDLFSLTVEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATVFAN 531

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             G    +   + + I   ++  L R +  L IRHVG   A+ LA+ + S +   +    
Sbjct: 532 QQGEPKKNAVAMLEGIAAAKDAPLARVLTGLSIRHVGPVAAQELARQFRSIERIDEATEE 591

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVS 644
            +A              VG  IA ++ +++    +   V    +           E    
Sbjct: 592 ELAAA----------DGVGPTIAASVKQWFAEDWHREIVRKWREAGVRMADEGSDEDEGP 641

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TGTL    R  A+E +  LGA V+  +S+KT  ++VGDNPGSK +KA QL
Sbjct: 642 RPLEGLTVVVTGTLAGHTRDGAKEALQALGAKVAGSVSKKTAFVVVGDNPGSKYDKAMQL 701

Query: 705 GVKIMNEEQFLFLLQQ 720
            V +++E+ F  LL+Q
Sbjct: 702 KVPVLDEDGFAILLEQ 717


>gi|78357136|ref|YP_388585.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|123768784|sp|Q30ZK6|DNLJ_DESDG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78219541|gb|ABB38890.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 705

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 238/724 (32%), Positives = 386/724 (53%), Gaps = 56/724 (7%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           R+  P++     +  + +  L   + YH   YY   +P I D+EYDAL R    +    P
Sbjct: 3   RRGAPVKQ-DSAKVEQRMEELRTLLEYHGHRYYVMDEPEISDAEYDALFRELVRLEEEHP 61

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           +      P  P +K+GG++   L    HS+   SL+  + IE+ R+F+ R+ R    + D
Sbjct: 62  EHIH---PGSPTHKVGGQILDGLKPREHSLRMYSLDNAFGIEEFREFVERVVR---LEPD 115

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
             + F ++PK+DG  + + YE G F+ A  RGDG  GEDV+  +R +  +   L+  I  
Sbjct: 116 APLEFWVDPKMDGLAMELVYENGVFLLAVTRGDGSMGEDVTHTMRTVRNVRMRLNPEIEA 175

Query: 184 --IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFV 240
              +EVRGEV I++ DF ALN      G K +ANPRNAA+G +R+L+ +        F  
Sbjct: 176 PVRLEVRGEVIITRADFEALNARQQQKGGKLFANPRNAAAGSVRQLDSSVAAARPLRFMA 235

Query: 241 HGLGKTSE----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
           +G+G+          + QY++++ ++ LGF V +  R       + + + E+ + R  LP
Sbjct: 236 YGVGQVVWADGRQRWRTQYDIMRGLQELGFAVPSQGRLCAAPADVEAAFTELSAARHELP 295

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           ++IDG+V K+++  LQ+ LG  AR+PRW I+ KF   QA TRL DI IQ+GRTG++TPVA
Sbjct: 296 FEIDGVVAKLNDLDLQEALGFTARAPRWAIALKFPAHQARTRLKDIRIQVGRTGVMTPVA 355

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            LEPV +GG  +++ATLHNED I+            + + +GD V+V+RAG+VIP+VV  
Sbjct: 356 ELEPVTVGGVTVSSATLHNEDEIR-----------AKGLMLGDVVIVQRAGDVIPEVVRA 404

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           +  ER    + + FP+ CP+C S  VR          AA RCT    C A + + + HFV
Sbjct: 405 VPEERTGAEREYVFPAVCPVCGSAAVRGEGE------AAWRCTNMQ-CPAVRKQAIIHFV 457

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           S+   +I+G+G++ ++    S      +  PAD+F + R               G+   +
Sbjct: 458 SKAGLDIDGVGRKWIEQLVDS----GRVVSPADLFRITREDLLGM------ERMGEKLAS 507

Query: 537 NLYDSINKRRNISL-ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
           N  ++ +  R+ S  +RFI +LGIRHVG + AR+LA  + +     +           D 
Sbjct: 508 NFIEAFDSARHESTLQRFICALGIRHVGEQTARTLAARFGNMDELMRA----------DQ 557

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKL 652
            +L  +  +G  +A +I  F+ N +N   ++           +     S+    +  KK+
Sbjct: 558 ETLQSLRDIGGEVAGSIRAFFANGQNRELLQQFKNLGLWPEEQQPAGDSTPVTPLAGKKI 617

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           +FTG+L ++ R +A+    + GA V + +S + DI++ GD PGSKLEKA+ LG+ ++ E+
Sbjct: 618 LFTGSLVRMTRSEAKAMAEKAGAAVMSGVSARLDILVAGDKPGSKLEKARSLGITVLTED 677

Query: 713 QFLF 716
           +F+ 
Sbjct: 678 EFIR 681


>gi|81429164|ref|YP_396165.1| NAD-dependent DNA ligase [Lactobacillus sakei subsp. sakei 23K]
 gi|123755813|sp|Q38VC5|DNLJ_LACSS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78610807|emb|CAI55858.1| NAD-dependent DNA ligase [Lactobacillus sakei subsp. sakei 23K]
          Length = 677

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 230/718 (32%), Positives = 371/718 (51%), Gaps = 53/718 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E  +  +A      L  +++ +   YY    P++ D  YD L R  + +  AFP +  +
Sbjct: 7   VEDYTQSEAASLAQQLRDQLADYSQAYYTQDAPLVEDHVYDELYRDLEQLEAAFPVIVTN 66

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P  K+GG++     KVTH IP LS+  +++  +L  F  R+ +         I +
Sbjct: 67  ---DSPTQKVGGQVLPGFTKVTHEIPMLSMGDVFSEAELAAFDQRLRK----NTATEIEY 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  I + YEKG+FV  A RG+G  GED++  ++ I  IP+ L+  +   IEVR
Sbjct: 120 NVELKIDGLAIDLIYEKGRFVRGATRGNGTIGEDITQNLKTIKAIPQKLTRPVS--IEVR 177

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247
           GE Y+ K  F  LN +  A G+ P+ANPRNAA+G LR+L+      R L+ F++ +    
Sbjct: 178 GECYMPKAAFADLNQKREAEGQAPFANPRNAAAGSLRQLDAKVAAARQLSAFIYTIVTFD 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           ++ A  Q E L  +  LGF VN           + ++  + +  R+ L Y IDG+V KV+
Sbjct: 238 DVQATTQSEALHVLAELGFNVNPTSVVCQNMAEVQAFIEQYQGTRNDLAYGIDGVVLKVN 297

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +LQ+QLG   + PRW I++KF  ++A T + +I+  +GRTG++TP A ++PV + G  
Sbjct: 298 DLALQRQLGNTVKVPRWEIAYKFPPEEAETVIREIEWTVGRTGVVTPTAVMDPVQLAGTT 357

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN D ++            +D+R+ D VL+ +AG++IP++  +++ +R  D+Q 
Sbjct: 358 VARASLHNADMLR-----------DKDVRLLDTVLLHKAGDIIPEISQVVLAKRPSDSQA 406

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP C   +V            A RC   + C AQ  E+L HF SR+A NI+GLG
Sbjct: 407 YGIPTTCPSCGHDLVHLDEE------VALRCINPM-CPAQMKEQLTHFASRNAMNIDGLG 459

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +    + E     I   AD++ L             +  F + S+ NL ++I+  R 
Sbjct: 460 PRIITQLLEKE----LIHDVADLYRLTADDL------AQLDKFKEKSINNLLNAIDASRQ 509

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SLER +F LGIRHVGA+ AR LA+++ +                 D  ++I V  +G I
Sbjct: 510 NSLERLLFGLGIRHVGAKAARLLAEHFQNLAALMAS----------DQETIITVDTIGTI 559

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP-----SIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           IA ++V ++ + +    +  L                     S    K +V TG L++  
Sbjct: 560 IADSLVTYFADSQVQTLMAELEAVGVNLTYTGVTKAQAATSDSYFNGKTVVLTGKLEQYT 619

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R + ++ +   GA V+  +S+KTD +I G + GSKLEKAQ L + I+NE      L Q
Sbjct: 620 RGELKQLLEDNGAKVTGSVSKKTDALIAGQDAGSKLEKAQSLAIPIINEADLDNYLAQ 677


>gi|294506892|ref|YP_003570950.1| NAD-dependent DNA ligase [Salinibacter ruber M8]
 gi|294343220|emb|CBH23998.1| NAD-dependent DNA ligase [Salinibacter ruber M8]
          Length = 691

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 221/703 (31%), Positives = 372/703 (52%), Gaps = 49/703 (6%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           + +H+  YY    P++ D+EYD L ++   +   +P L   + P+ P +++GG +   L 
Sbjct: 32  LRHHNYRYYVLDAPVVSDAEYDRLFQQLQTLEAEYPGL---QTPDSPTHQVGGPVRDELG 88

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
            VTH  P LSL+ ++  +++R F     +   ++   ++ +T EPK DG  + + YE G+
Sbjct: 89  TVTHPAPMLSLKAVYEEDEVRNFAETCRKELGRE---TVTYTAEPKFDGLAVELIYEDGR 145

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYISKNDFLALNDE 204
            V  A RGDG +GE+++A ++ I  +P  L      +P+ + VRGE Y+ K++F A N  
Sbjct: 146 LVQGATRGDGETGEEITANVKTIKGVPLRLRDDARPVPDRLVVRGEAYMRKDEFNAFNRR 205

Query: 205 MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
               G+K +ANPRNAA+G LR+L+      R L  + + +            E+L+ +  
Sbjct: 206 REEEGKKVFANPRNAAAGSLRQLDSNITARRPLRIYFYEIAPVDGRDFATHAEVLEALPE 265

Query: 264 LGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
            G     + +R+ +     ++++  +   R  LPY+IDGLV KV++F   + LG R R P
Sbjct: 266 WGLRVCEDHIRRCDGIDAALAHHAALVDRRDDLPYEIDGLVIKVNDFDGHETLGVRDRDP 325

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           RW  ++KF  ++A+T + D+ +Q+GRTG +TPVA L PV +GG  +T A+LHN++ I   
Sbjct: 326 RWAAAYKFPPRRATTSIEDLFVQVGRTGRITPVAVLAPVEVGGVEVTRASLHNQNEIDR- 384

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                     +DIR+GD VL++RAG+VIP+VV +I +ER     P+  P  CP+C S VV
Sbjct: 385 ----------KDIRIGDTVLIERAGDVIPQVVKVIEDERDGTEAPYHIPDACPVCGSEVV 434

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
              + K         CTGG+ C AQ  ERLKH+ SR+A +IEGLG ++ +        A 
Sbjct: 435 LSDDKKQA------FCTGGMTCPAQFRERLKHYASREATDIEGLGDKRAEQLID----AG 484

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            I+  +D++ L++           +  + D S  NL D I       L+RF+++LGI  V
Sbjct: 485 LIQTISDLYELEKADL------LQLERYADKSAQNLIDEIEASLEQDLDRFLYALGIPLV 538

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G+  AR LA+++ +                 D  +L  +  +G  +A +I  F+ +  N 
Sbjct: 539 GSATARLLAQHFDTLDALVDA----------DEDALTTIDDIGPEVAHSIATFFADDANR 588

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             ++ +          + ++ +  +     VFTG+L+   R   Q +V Q GA  ++ +S
Sbjct: 589 GVIDEMRDAGLTLTNPYAEDAA-PLAGLTFVFTGSLEDWTRSAVQRFVEQHGANATSSVS 647

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
             TD ++ G   GSK + A+ LGV +++E+ F  LL++ +  +
Sbjct: 648 GNTDYVVAGPGAGSKRDDAEALGVPVLDEDDFHALLRERDIEM 690


>gi|333024269|ref|ZP_08452333.1| putative NAD-dependent DNA ligase LigA [Streptomyces sp. Tu6071]
 gi|332744121|gb|EGJ74562.1| putative NAD-dependent DNA ligase LigA [Streptomyces sp. Tu6071]
          Length = 771

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 209/738 (28%), Positives = 350/738 (47%), Gaps = 63/738 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
               R+E   + +E+  H   YY   +P++ D+++D L RR  A+    P L     P+ 
Sbjct: 33  PADVREEHDRIAREVDEHRYRYYVNDQPVVSDAQFDELLRRLTALEEEHPQL---RTPDS 89

Query: 74  PLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           P  K+ G+         V H    LSL+ +++ E L  +  R+ +       +   +  E
Sbjct: 90  PTQKVAGDYQQFTPFASVEHRERMLSLDNVFDDEGLAAWAERLAKEIGAPGYH---YLCE 146

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190
            K+DG  + + YE G+   AA RGDG  GED++  +R I  IP  L+ +  PE++EVRGE
Sbjct: 147 LKVDGLAVNLTYENGRLTRAATRGDGRVGEDITPNVRTISDIPEQLAGDRVPELVEVRGE 206

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY    DF ALN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G     
Sbjct: 207 VYFPMEDFEALNARLVDAGEKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREGF 266

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                    + +   G P     +  ++  G+ S+       R ++ ++IDG+V K+DE 
Sbjct: 267 TIDRLSHAYELLHEWGLPTARHNKVVDSLDGVRSFIRYYGEHRHSVEHEIDGVVVKLDEI 326

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ +LG  +R+PRW  + KF  ++ +T+L+DI + +GRTG +TP A +EP+ + G+ + 
Sbjct: 327 PLQGRLGSTSRAPRWATAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPIVVAGSEVE 386

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+D +K            + + +GD V++++AG+VIP+++  +V+ R    + F 
Sbjct: 387 FATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSERAFV 435

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +         +     RC    +C AQ  ER+ +   R + +IE LG  
Sbjct: 436 MPAECPECGTPLRAM-----KEGDIDLRCPNARSCPAQLRERIFYLAGRKSLDIEHLGYV 490

Query: 490 QLDFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI------------------------ 524
                 +  +P+   +R   D+F L   +                               
Sbjct: 491 AATALTQPIEPSDPPVRDEGDLFDLTAEELLPIRSYVLDQDSGLPKRDPASGEEKIVTFF 550

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
            N  G    +  ++ ++I   +   L + +  L +RHVG   A +LA+ + S        
Sbjct: 551 ANKEGVAKKNTLSMLENIEAAKQRPLAQILTGLSVRHVGPVAAAALAREFRSIDRIFAAE 610

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
            +           L     VG  IA ++ ++Y+   +   +               +  S
Sbjct: 611 ES----------ELAETEGVGPTIAASLKQWYEEDWHREILRKWKAAGVRMEAAESETDS 660

Query: 645 SE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
               +E   +V TGTL++  R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA 
Sbjct: 661 GPRPLEGLTVVVTGTLERWTRDAAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAL 720

Query: 703 QLGVKIMNEEQFLFLLQQ 720
            L V ++ E+ F  LL++
Sbjct: 721 SLKVPVLEEDGFAILLEE 738


>gi|314936043|ref|ZP_07843392.1| DNA ligase, NAD-dependent [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655860|gb|EFS19603.1| DNA ligase, NAD-dependent [Staphylococcus hominis subsp. hominis
           C80]
          Length = 667

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 241/712 (33%), Positives = 378/712 (53%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +  ++ L   ++ +   YY    P + DSEYD L R    I +A P+L      + 
Sbjct: 1   MDNIQNRVNELHDLLNQYSYEYYVKDNPSVPDSEYDKLLRELIDIENAHPELKTD---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N E+LR+F  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHETPMLSLGNAFNEEELRRFDERIREHIG-----NVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  +   +   +EVRGE Y+
Sbjct: 113 IDGLAVSLKYEDGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--VEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LNDE      +P+ANPRNAA+G LR+L+P     R L+ F++ +   ++  A 
Sbjct: 171 PRRSFMRLNDEREKNEEQPFANPRNAAAGSLRQLDPKLAAKRKLSVFLYSVNDFTDFSAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q + L ++  LGF  N+   +     G++ Y  +    R  L YDIDG+V KV++   Q
Sbjct: 231 TQSDALDELDRLGFKTNHERARVEDIEGVLEYIKKWTKQREQLSYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T L DI++ IGRTG++TP A LEP+ + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTELKDIELSIGRTGVVTPTAILEPIRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED IK            RDIR+GD V+VK+AG++IP+VV  I++ R  DA+P+  P+
Sbjct: 351 LHNEDLIK-----------ERDIRIGDSVIVKKAGDIIPEVVRSIIDRRPNDAKPYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGNKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +  +     I+   DIF L +           +   G   V NL  +I   +  SLE 
Sbjct: 453 QLYHHQ----LIKDVGDIFYLTKEDL------LPLERMGTKKVENLLSAIEHAKQNSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+GA+ ++ LA+ + +     +               L+ +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGAKASQILAEKFETMDRLLKVTE----------EELVAIHDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668
           V +  N      +E L  +      +  K+       E +NK +V TG LQ++ R +A  
Sbjct: 553 VTYLDNEDIKALIEKLKDKNVNMTYKGVKSSEIEGHPEFQNKTIVLTGKLQQMTRKEATT 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++   GA V++ +++ TD++I G++ GSKL KA+Q G +I +E QF+    +
Sbjct: 613 WLEMQGAKVTSSVTKSTDLVIAGEDAGSKLSKAEQFGTEIWSESQFIEKQNE 664


>gi|291536367|emb|CBL09479.1| DNA ligase, NAD-dependent [Roseburia intestinalis M50/1]
          Length = 671

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 207/710 (29%), Positives = 358/710 (50%), Gaps = 50/710 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+   ++  L  +I+YH D YY    P I D E+D L ++   +    P+L      
Sbjct: 1   MTPEE---QIKELRDKINYHSDRYYNQDSPEISDYEFDMLMQQLKKLEKEHPELV---TK 54

Query: 72  NGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P   +GG     +   V H++P LSL+ +++ E++  F+ ++         +   F +
Sbjct: 55  DSPTQHVGGTAKRTAGVLVHHNVPMLSLQDVFSKEEVVDFVEQMKEQL-----DDPEFVV 109

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           E KIDG  + +RYE G    A  RGDG + GEDV+A  + I  + + L    PE +E+RG
Sbjct: 110 EYKIDGLSMALRYENGDLSLALTRGDGVNFGEDVTANAKVISDVKKKLKDK-PEYLEIRG 168

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EVY+   DF  +N++   +G+K +ANPRN A+G LR+L+      R L+ FV  + +   
Sbjct: 169 EVYMKNEDFDRVNEQQELLGKKIFANPRNCAAGTLRQLDSRVTKERKLSMFVFNIQQVRG 228

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      +  + ++  G P+    +   T   + +    +   R  L YDIDG V K++ 
Sbjct: 229 MDIMTHTQGYEFLKRQGIPIIEDYKVCKTADEVWNAITAIGENRGNLGYDIDGAVIKINR 288

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           +S ++ LG  ++ P+W I++K+  ++  T+LLDI++ +GRTG +TP A  EPV + G  +
Sbjct: 289 YSDRELLGNTSKVPKWAIAYKYPPEEKETKLLDIELSVGRTGRITPTAVFEPVRLCGTSV 348

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN+D+I  L           D+ +GD ++V ++GE+IPKV ++   +R    + F
Sbjct: 349 SRATLHNQDFIDDL-----------DVGIGDTIVVYKSGEIIPKVKEVRKEKRTEGWKRF 397

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           + P  CP+C ++  R+ +       A  +CT    C AQ    + +FV RDA +I+G G 
Sbjct: 398 AIPDVCPVCGAKTEREKD------TADIKCTSP-NCPAQLERHIINFVGRDAMDIKGFGT 450

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             ++   +       I+  ADIF L+  ++    +        + +   L ++I K +  
Sbjct: 451 VYIEELVR----LGYIKDIADIFELKDHREELIEQGII---GKEKNTDKLLETIEKAKEN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
                +   GI +VG   A+++ K + S  +              D  +L+ V  VG++ 
Sbjct: 504 DAYMLLTGFGIPNVGKAAAKTIMKRFSSILDLEDA----------DRDALMEVDDVGEVS 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A  I  F+ + +N   +  L            + + S +  K +V TGTL  + R +A E
Sbjct: 554 ADCIFRFFHDEKNKEMIARLKSLGVNMEAEETETIDSAVSGKTVVITGTLPTLGRKEAAE 613

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            V + G  VS  +S+KTD ++ G++ GSKL KAQ+LG+ ++ E +   LL
Sbjct: 614 LVEKYGGKVSGSVSKKTDYVVAGESAGSKLTKAQELGITVLTEAELFVLL 663


>gi|229815888|ref|ZP_04446212.1| hypothetical protein COLINT_02944 [Collinsella intestinalis DSM
           13280]
 gi|229808583|gb|EEP44361.1| hypothetical protein COLINT_02944 [Collinsella intestinalis DSM
           13280]
          Length = 752

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 237/735 (32%), Positives = 350/735 (47%), Gaps = 76/735 (10%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
            L   + YH   YY    P I D+ +D L      I  A P+L     P+    ++GG +
Sbjct: 49  ELRHLLDYHAYRYYALDAPEITDAAFDKLLVELQQIEAAHPELV---TPDSYTQRVGGYV 105

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
           +     VTH     S++   N+E+L +++ R            + +T E KIDG  + I 
Sbjct: 106 SEQFTPVTHMARMYSMDDAMNLEELDEWLARTEEALGA---GRVAYTCELKIDGLGVAIT 162

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII--------EVRGEVYIS 194
           Y+ G FV AA RGDG +GEDVS  +R I  +P  LS      +        EVRGEVY+ 
Sbjct: 163 YQNGAFVRAATRGDGTTGEDVSLNVRTIKDVPMHLSEAALAHMGADRGTPIEVRGEVYMP 222

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F  LN E  A GR+P+ANPRNAA+G LR+ +P    TR L  F++ +  T+ +    
Sbjct: 223 KGSFARLNAEADAEGREPFANPRNAAAGSLRQKDPKVTATRSLATFIYSIADTAPLHVDS 282

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q+  L  +R  GF VN  V +  +   + ++  +  + R  L YDIDG+V KVD F  Q 
Sbjct: 283 QHAFLDWLREAGFSVNASVARCTSPAEVHAFCADALAHRGDLDYDIDGVVVKVDGFDQQA 342

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  AR+PRW I+ KF  ++ +T L +I IQ+GRTG+LTPVA  +PV + G+ I  ATL
Sbjct: 343 DLGFTARAPRWAIAFKFPPEEKTTVLREIRIQVGRTGVLTPVAEFDPVTVAGSTIARATL 402

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+            +D+RVGD ++V +AG+VIP+VV  ++++R  DA  +  P  
Sbjct: 403 HNLDEIRR-----------KDVRVGDTIIVHKAGDVIPEVVGPMLDKRPADAVEWDMPEA 451

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S VV + +    +          L C AQ  ERL H+VSR   +++GLG    D 
Sbjct: 452 CPACGSPVVHEGDEVAYR-------CVSLDCPAQLKERLIHWVSRGCMDVDGLG----DE 500

Query: 494 FFKSEDPAFSIRIPADIFTLQ--------------RRQQTSTTKIENILGFGDVSVTNLY 539
                  A  +R  AD +TL               +  +       + +  G      + 
Sbjct: 501 LIDKMIEAGLLRDVADFYTLDASAIAALDTGRTYAKDDKKKGVAAGDPIKVGHTIAGKVM 560

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           D + + +   L R +F+LGIRHVG  +A  LA+ +L+    A                + 
Sbjct: 561 DELVRSKAQPLSRVLFALGIRHVGKSVAEVLAQRFLTIDALAAASE----------EDIA 610

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---------------S 644
               +G  IA ++ EF     N+  ++ L +            V                
Sbjct: 611 ACEGIGPKIAASVREFLSVSENLEVLQRLREAGLALEENLGAAVAQAAQETGVDADLAAG 670

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             ++    V TGTL    R +A   +  LGA VS  +S+KT  ++ G   GSKL KA+ L
Sbjct: 671 QPLDGLAFVLTGTLVNRTRDEAGAALKLLGAKVSGSVSKKTSYLVAGPKAGSKLTKAESL 730

Query: 705 GVKIMNEEQFLFLLQ 719
           GV +++EE    +L 
Sbjct: 731 GVPVLDEEALERILA 745


>gi|318059490|ref|ZP_07978213.1| NAD-dependent DNA ligase LigA [Streptomyces sp. SA3_actG]
 gi|318076490|ref|ZP_07983822.1| NAD-dependent DNA ligase LigA [Streptomyces sp. SA3_actF]
          Length = 783

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 210/738 (28%), Positives = 350/738 (47%), Gaps = 63/738 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
               R+E   + +E+  H   YY   +P++ D+++D L RR  A+    P L     P+ 
Sbjct: 33  PADVREEHDRIAREVDEHRYRYYVNDQPVVSDAQFDELLRRLTALEEEHPQL---RTPDS 89

Query: 74  PLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           P  K+ G+         V H    LSL+ +++ E L  +  R+ +       +   +  E
Sbjct: 90  PTQKVAGDYQQFTPFASVEHRERMLSLDNVFDDEGLAAWAERLAKEIGVPGYH---YLCE 146

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190
            K+DG  + + YE G+   AA RGDG  GED++  +R I  IP  L+ +  PE++EVRGE
Sbjct: 147 LKVDGLAVNLTYENGRLTRAATRGDGRVGEDITPNVRTISDIPEQLAGDRVPELVEVRGE 206

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY    DF ALN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G     
Sbjct: 207 VYFPMEDFEALNARLVDAGEKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREGF 266

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                    + +   G P     +  ++  G+ S+       R ++ ++IDG+V K+DE 
Sbjct: 267 TIDRLSHAYELLHEWGLPTARHNKVVDSLDGVRSFIRYYGEHRHSVEHEIDGVVVKLDEI 326

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ +LG  +R+PRW  + KF  ++ +T+L+DI + +GRTG +TP A +EP+ + G+ + 
Sbjct: 327 PLQGRLGSTSRAPRWATAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPIVVAGSEVE 386

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+D +K            + + +GD V++++AG+VIP+++  +V+ R    + F 
Sbjct: 387 FATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSERAFV 435

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +         +     RC    +C AQ  ER+ +   R + +IE LG  
Sbjct: 436 MPAECPECGTPLRAM-----KEGDIDLRCPNARSCPAQLRERIFYLAGRKSLDIEHLGYV 490

Query: 490 QLDFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI------------------------ 524
                 +  +P+   +R   D+F L   +                               
Sbjct: 491 AATALTQPIEPSDPPVRDEGDLFDLTAEELLPIRSYVLDQDSGLPKRDPASGEEKIVTFF 550

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
            N  G    +  ++ ++I   +   L + +  L IRHVG   A +LA+ + S        
Sbjct: 551 ANKEGVAKKNTLSMLENIEAAKQRPLAQILTGLSIRHVGPVAAAALAREFRSIDRIFAAE 610

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
            +           L     VG  IA ++ ++Y+   +   +               +  S
Sbjct: 611 ES----------ELAETEGVGPTIAASLKQWYEEDWHREILRKWKAAGVRMEAAESETDS 660

Query: 645 SE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
               +E   +V TGTL++  R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA 
Sbjct: 661 GPRPLEGLTVVVTGTLERWTRDAAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAL 720

Query: 703 QLGVKIMNEEQFLFLLQQ 720
            L V ++ E+ F  LL++
Sbjct: 721 SLKVPVLEEDGFAILLEE 738


>gi|163841673|ref|YP_001626078.1| NAD-dependent DNA ligase [Renibacterium salmoninarum ATCC 33209]
 gi|190359277|sp|A9WTZ3|DNLJ_RENSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|162955149|gb|ABY24664.1| NAD-dependent DNA ligase [Renibacterium salmoninarum ATCC 33209]
          Length = 758

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 217/734 (29%), Positives = 364/734 (49%), Gaps = 61/734 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R E S L ++I ++   YY  ++ ++ D+E+D L RR + I    P+L      + P  +
Sbjct: 33  RAEYSKLVEDIRHYRFAYYNEAESLVSDAEFDVLFRRLEEIEALHPELI---SNDSPTQE 89

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-----SIFFTLEP 132
           +GGE++ +   V H+    SLE +++IE+L+ +I +     +K   +      + +  E 
Sbjct: 90  VGGEVSAAFTPVQHTSQIYSLEDVFSIEELQSWIIKAQANAEKLAGSIVAERPLRWLTEL 149

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEV 191
           KIDG  + + Y  G+ V AA RGDG +GED++  +  I  IPR L     PE +E+RGEV
Sbjct: 150 KIDGLAVNLLYRNGQLVRAATRGDGITGEDITHNVLTIQEIPRQLRGENLPEEVEIRGEV 209

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           +I+  DFLALN++++  GR P+ANPRNAA+G LR+ +P     R L+  VHG+G    + 
Sbjct: 210 FIASKDFLALNEQIVGTGRAPFANPRNAAAGSLRQKDPADTAKRPLSMLVHGIGSRIGLD 269

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E    ++  G P +   +    +  ++ Y N     R  L ++IDG+V K+D+F+
Sbjct: 270 VASQSESYALLKAWGLPTSPYFKVLTGYQEVLDYINHYGEHRHDLLHEIDGIVIKIDDFA 329

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q  LG  +R PRW +++K+  ++  T+LLDI + +GRTG +TP   +EPV + G+ +  
Sbjct: 330 SQNALGFTSRVPRWAVAYKYPPEEVHTKLLDILVNVGRTGRVTPFGVMEPVKVAGSTVEM 389

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+D +K            + + +GD V++++AG+VIP++V  ++  R    + F  
Sbjct: 390 ATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVGPVLALRDGREREFVM 438

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + +         +     RC    +C  Q  ER+ H   R AF+IE LG + 
Sbjct: 439 PTECPSCGTALA-----PAKEGDVDIRCPNAKSCPDQLRERVFHLAGRGAFDIEALGWEA 493

Query: 491 LDFFFKSEDPAF-SIRIPADIFTLQRRQ------------------------QTSTTKIE 525
                +  +P    +R  A IF L                               +   E
Sbjct: 494 AIALTQPAEPELAPVRNEAQIFNLVAEDLALVKIKREKKVKGVLSGVHELVPYFYSKGTE 553

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
                   +   L+  + K +   L R + +L IRHVG   +R+LA  + S         
Sbjct: 554 EKPSEPTSNTVKLFIELEKAKAQPLWRVLVALSIRHVGPTASRALATAFGSMAAIRAASE 613

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
                       L  V  VG  IA A++E++    +   ++A   +        +++V  
Sbjct: 614 P----------ELAEVDGVGPTIAAALIEWFAEDWHREIIDAWAADGVRMADERDESVRR 663

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +    +V TG+L+K  R +A+E +   G   +  +S+ TD ++ G+N G+KL+KA++LG
Sbjct: 664 TLAGLTIVVTGSLEKFNRDQAKEAIINRGGKSAGSVSKNTDYVVAGENAGTKLDKAEKLG 723

Query: 706 VKIMNEEQFLFLLQ 719
           V +++E  F  LL 
Sbjct: 724 VTVLDEAGFETLLA 737


>gi|218295128|ref|ZP_03495964.1| DNA ligase, NAD-dependent [Thermus aquaticus Y51MC23]
 gi|218244331|gb|EED10856.1| DNA ligase, NAD-dependent [Thermus aquaticus Y51MC23]
          Length = 674

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 234/712 (32%), Positives = 381/712 (53%), Gaps = 52/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E AR+ ++ L   I YH+  YY    P I D+EYD L R    +   FP+L   + P
Sbjct: 1   MTLEAARRRVNELRDLIRYHNYLYYVLDAPEISDAEYDRLLRELKELEERFPEL---QSP 57

Query: 72  NGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G     S    V H     SL+  ++++++R F  RI R   +K      +T+
Sbjct: 58  DSPTEQVGARPLESTFRPVRHPTRMYSLDNAFSLDEVRAFEERIERALGRK--GPFLYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  V+ A RGDG +GE+V+  +  I TIPR L+   P+ +EVRGE
Sbjct: 116 EHKVDGLSVNLYYEEGILVFGATRGDGETGEEVTQNLLTIRTIPRRLTGV-PDRLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+    FL LN E+   G + + NPRNAA+G LR+ +P     R L    + LG   E 
Sbjct: 175 VYMPIEAFLRLNQELEEAGERIFKNPRNAAAGSLRQKDPRVTARRGLRATFYALGLGLEE 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K Q+++L  +R  GFPV +G  +A    G+   Y      R  LP++ DG+V K+D+
Sbjct: 235 TGLKSQHDLLLWLRERGFPVEHGFTRALGAEGVEEVYQAWLKERRKLPFEADGVVVKLDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +L ++LG  AR+PR+ +++KF  ++  TRLL +  Q+GRTG +TPV  LEPV I G+ +
Sbjct: 295 LALWRELGYTARAPRFALAYKFPAEEKETRLLSVAFQVGRTGRITPVGVLEPVFIEGSEV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  TLHNE +I+ L           D+R+GD VLV +AG VIP+V+ ++   R  + +P 
Sbjct: 355 SRVTLHNESFIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKERRTGEEKPI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P  CP C   ++++           HRC   L C A++ E ++H+ SR A +I+GLG+
Sbjct: 404 LWPENCPECGHALIKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIQGLGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   +       +R  AD++ L++    +      +   G+ S  NL   I + +  
Sbjct: 455 KLIEKLLEK----GLVRDVADLYRLKKEDLVN------LERMGEKSAENLLRQIEESKGR 504

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            LER +++LG+  VG  +AR+LA  +       +               L+ V  VG++ 
Sbjct: 505 GLERLLYALGLPGVGEVLARNLALRFGHMDRLLEA----------GLEDLLEVEGVGELT 554

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+AI+   ++P     V  L +       +  +     ++    V TG L +  R + + 
Sbjct: 555 ARAILNTLKDPEFRDLVRRLKEAGVEMEAKERE--GEALKGLTFVITGELSR-PREEVKA 611

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV  ++EE+   L+++
Sbjct: 612 LLRRLGAKVTDSVSRKTGFLVVGENPGSKLEKARALGVPTLSEEELYRLIEE 663


>gi|254422498|ref|ZP_05036216.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7335]
 gi|196189987|gb|EDX84951.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7335]
          Length = 694

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 217/714 (30%), Positives = 339/714 (47%), Gaps = 54/714 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +     + L  ++      YY    P + DS YD L R    +   +P L   +  + P 
Sbjct: 21  EIETRAAELRSQLQKASYAYYVLDAPELPDSVYDRLYRELQTLEDQYPGL---QTSDSPT 77

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G E       V H+IP  SLE  ++ E+   +  R  R   + D        E KID
Sbjct: 78  QRVGAEPAEQFTSVRHNIPLYSLENAFDTEEYLDWQARWQRL--EPDVGETTAVAELKID 135

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEV 191
           G  + + YE G  +    RGDG +GED++  +R I TIP  L +      P ++EVRGE 
Sbjct: 136 GNALALTYENGMLIRGVTRGDGIAGEDITQNVRTIRTIPLRLHIENGQAPPPVVEVRGEA 195

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL----GKT 246
           ++  + F  +N +  A G   +ANPRNAA+G LR+L+      R L+FF + +    G  
Sbjct: 196 FLPLDVFDDINQKRQAEGTALFANPRNAAAGTLRQLDAKIVAERQLDFFAYTVLMPEGTG 255

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                  Q+  L  ++ L F VN   +       + SYY+E +  R  LPY  DG+V K+
Sbjct: 256 DLDAPTTQWTALDLLQTLRFRVNPHRKLCQRAAEVASYYDEWEEKRHDLPYLTDGVVVKL 315

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D F LQ +LG   + PRW I+ K+  ++  T L  I +Q+GRTG +TPVA L PV + G 
Sbjct: 316 DSFELQDRLGFTNKFPRWAIALKYPAEEVPTTLNKITVQVGRTGAITPVAELSPVQLAGT 375

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ ATLHN D +  L           D+ +GD V+V++AGE+IP+VV ++ + R   A+
Sbjct: 376 TVSRATLHNADRLIEL-----------DLHLGDTVVVRKAGEIIPEVVRVLSDLRPKGAK 424

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            +  P+ CP+C   VV+          A  RC    +C A     L+H+ SRDA +I GL
Sbjct: 425 AYQLPTNCPVCDQPVVKPEGE------AVTRCVN-QSCPAILSGSLRHWASRDALDISGL 477

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ +  +         +   AD++ L             +   G      L  +I   +
Sbjct: 478 GERLVQSWIDQS----VVTSIADLYDLTLEDL------LPLERMGKQLANKLLQAIALSK 527

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
                + ++ LGIR VG+  A+ LA  + S    A    ++IA          ++  +G 
Sbjct: 528 QKPWAKVLYGLGIRLVGSTNAQILANRFPSVAMLAAADESVIA----------QIYGIGP 577

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRH 664
            IAQ++ +++Q P N   +  L           +K       +  K  V TGTL  ++R 
Sbjct: 578 EIAQSVRQWFQLPANQQLIARLEAAGLQLEATPQKIDQRPQPLMGKSFVLTGTLPTLKRA 637

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A+  +   G  VS   S KTD ++VG+N GSK  KA +LG+K + E + + LL
Sbjct: 638 EAKAQIQAAGGRVSGAPSAKTDYVVVGENAGSKQAKADELGLKQLTEAELIELL 691


>gi|323467080|gb|ADX70767.1| DNA ligase [Lactobacillus helveticus H10]
          Length = 689

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 215/720 (29%), Positives = 368/720 (51%), Gaps = 51/720 (7%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
            Q + +  +++++A+KE +SL  ++    D YY    P + D+ YD    R   +  AFP
Sbjct: 17  NQEVKMAKITLDEAKKEAASLRTKLDEWADAYYSKDAPEVEDNVYDQSYNRLLELEKAFP 76

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           ++     P+    ++GGE++    KV H IP LS+  +++ ++L++F  R+ +       
Sbjct: 77  EIV---TPDSITQRVGGEIDSDFTKVNHPIPMLSMGDVFSKDELKEFDQRMQKLVG---- 129

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
           + + + +E KIDG  +++ Y+ GK V A+ RG+G+ GEDV+A  R I  IP+VL   +  
Sbjct: 130 HPVEYNVELKIDGLSLSLEYQDGKLVRASTRGNGYIGEDVTANARYIADIPQVLPEPL-- 187

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243
            IEVRGE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+P    +         
Sbjct: 188 TIEVRGECYMGKEAFAKLNQEREDEGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYT 247

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                     Q++ +++M  LGF  N   R+      +  + +E  + R++L Y IDG+V
Sbjct: 248 WVNPPREITSQHQAIERMHELGFHTNETGRKLANLDEVFDFIDEYTAKRNSLTYGIDGIV 307

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVD+ SL++QLG   + PRW I++KF  ++  T + DI   +GRTG++TP A + PV +
Sbjct: 308 LKVDDLSLEQQLGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMYPVQL 367

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  A+LHN DY+             + +R+GD V + +AG++IP++ ++++++R  
Sbjct: 368 AGTTVARASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLSKRPA 416

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D+ P+  P+ CP C  ++V   +        A RC    +C AQ  E + HF SR A NI
Sbjct: 417 DSVPYEIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGIIHFASRPAMNI 469

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            GLG + +      +     +   AD++ L             +  F + S+ NL  +I+
Sbjct: 470 AGLGPKIVKQLIAKD----LVHNVADLYHLTEDDL------AQLDHFKEKSINNLLTAID 519

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +  S+E  I  LGI HVGA+ AR +A+ + + +                   +  +  
Sbjct: 520 NSKKNSVELLITGLGIDHVGAKAARLIAQKFKNLEKIMSL----------GVQDIASIDT 569

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQ 659
           +G   A+++  ++  P     +E L +             E+   +  ++K +V TG L+
Sbjct: 570 IGMATAESMTTYFAQPEAQKLIEELRESGLNMDYLGADEQEEAPDNPFKDKTVVLTGKLE 629

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R +  + +  LGA V+  +S KTD +I G + GSK  KA+QLGV ++ EE+ +  ++
Sbjct: 630 HYTRSEFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYNKAEQLGVPLLTEEEAIAQIE 689


>gi|184201319|ref|YP_001855526.1| NAD-dependent DNA ligase [Kocuria rhizophila DC2201]
 gi|254781351|sp|B2GL64|DNLJ_KOCRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|183581549|dbj|BAG30020.1| NAD(+)-dependent DNA ligase [Kocuria rhizophila DC2201]
          Length = 766

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 223/750 (29%), Positives = 358/750 (47%), Gaps = 73/750 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  R+E + L   +      YY + +P+I D+EYD L R  +      P+L  +   + P
Sbjct: 27  EALREEYAQLSDRVREARAAYYVHDQPVISDAEYDQLYRSLEEFEALHPELKAN---DSP 83

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSIFFTLEPK 133
             ++GGE+  +   V H     SLE +++ ++L  ++ R  +   +      + +  E K
Sbjct: 84  TQEVGGEVGAAFSPVKHLEKMYSLEDVFSTDELVAWLERAQKQVAELPGAPEVAWLSEVK 143

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           IDG  + + Y  G  V AA RGDG +GED++  +  I TIP+ LS    PE +EVRGEV+
Sbjct: 144 IDGLAVNLLYRDGVLVRAATRGDGTTGEDITHNVATIKTIPQRLSGENLPEEVEVRGEVF 203

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           IS  DF  LN+ M+  GR P+ANPRNAA+G LR+ +P     R L+ FVHG+G    +  
Sbjct: 204 ISSKDFRTLNEAMVEEGRAPFANPRNAAAGSLRQKDPQVTARRPLSMFVHGIGYVRGVDL 263

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           + Q E  + +R  G PV+   R  +T   ++ +  E    R  L ++IDG+V KVD+   
Sbjct: 264 ETQSEAYEILRGWGLPVSPYSRVLSTVAEVLEFIAEFGDKRHALLHEIDGIVVKVDDRRT 323

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R PRW +++K+  ++ +T L+DI + +GRTG +TP   ++PV + G+ +  A
Sbjct: 324 QFRLGYTSRVPRWAVAYKYPPEEVNTTLVDILVNVGRTGRVTPFGLMDPVRVAGSTVEMA 383

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D ++            + + +GD V++++AG+VIP++V  +V  R    + F  P
Sbjct: 384 TLHNQDMVR-----------AKGVLIGDTVVLRKAGDVIPEIVGPVVALRDGSEREFVMP 432

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +         +     RC     C +Q  ER+ H   R AF+IE LG++  
Sbjct: 433 AECPSCGTPLR-----PAKEGDVDIRCPNAETCPSQLKERVNHAAGRGAFDIEALGEEAA 487

Query: 492 DFFFKS---------EDPAFSIRIPADIFTLQRRQQTSTTKIENILGF------------ 530
               +          E     +R  A +F L            +                
Sbjct: 488 RALTQPVPLDAPDGTELSVPPLRNEAGLFDLTPEDLRDVMVWRDARRTVTDEETGEKVQR 547

Query: 531 --------------------GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
                                  +   ++  + + ++  L R + +L IRHVG   ARSL
Sbjct: 548 VTPELVPYFWTKPTKARPSVPSKTTEQMFAQLEQAKDTELWRVLVALSIRHVGPTAARSL 607

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
           A    S     Q           D  +L     VG +IAQA+ EF+  P     VE    
Sbjct: 608 ATSLRSMDAIRQA----------DPETLAGTDGVGPVIAQAVQEFFAEPWRRRVVEQWAA 657

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
                    +++    +E   +V TG+L+   R  A+E + + G   S  +S+KT  ++ 
Sbjct: 658 AGVRMEEEVDESTPRTLEGVTVVVTGSLEGYSRDSAKEAILKRGGKASGSVSKKTHFLVA 717

Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           GDN G+KL+KA+ LGV +++E  F  LL Q
Sbjct: 718 GDNAGTKLDKAESLGVPVLDEAGFEQLLAQ 747


>gi|296123087|ref|YP_003630865.1| DNA ligase, NAD-dependent [Planctomyces limnophilus DSM 3776]
 gi|296015427|gb|ADG68666.1| DNA ligase, NAD-dependent [Planctomyces limnophilus DSM 3776]
          Length = 707

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 228/728 (31%), Positives = 367/728 (50%), Gaps = 59/728 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S +QAR  L  L QEI  HD  YY  ++  I D EYD L  R   +  AFP+L  +   +
Sbjct: 18  SADQARHLLDKLRQEIRRHDRLYYVLAQNEISDLEYDRLMARLLEVEAAFPELTTA---D 74

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-DNSIFFTLE 131
            P  K+GGE      +V HS+P LS++ +++   L +F  ++ R   +      + +  E
Sbjct: 75  SPSQKVGGEPIEGFVQVAHSVPMLSIDNVYDESGLLEFGQKVSRRASEVGWKGPMEWLAE 134

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-----------N 180
            K+DG  +++ YE+GK + A  RGDG  G+DV+   + I  +P  L             N
Sbjct: 135 FKVDGVALSLIYEEGKLIRAVTRGDGRVGDDVTHNAKTIKGVPLFLEDGSSKKSLFAESN 194

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           IP ++EVRGE YI   DF  +    +  G +P+ N RNA +G L+ L+P     R L FF
Sbjct: 195 IPRLLEVRGEAYIGNQDFAKVRAHQLERGEEPFKNSRNATAGSLKLLDPKLCAQRQLRFF 254

Query: 240 VHGLGKTSEI---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
            H LG   E      K   + L+    +G P         +F   V+    M    STL 
Sbjct: 255 AHSLGAIDEQEATRFKTHADYLELFYQVGLPTVPMTACHPSFEAAVAASPTMMEALSTLD 314

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           +++DGLV+KV+  +L+ +LG  ++SPRW++++K+   +A+T++L+I +Q+G+TG+LTPVA
Sbjct: 315 FEVDGLVFKVNNLALRAELGMTSKSPRWIVAYKWERYEAATKVLNITVQVGKTGVLTPVA 374

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            LEPV I G  ++ ++LHN D I+ L            + VGD V+V++AG++IP +V +
Sbjct: 375 DLEPVEIAGTTVSRSSLHNRDEIERL-----------GLGVGDTVIVEKAGKIIPHIVRV 423

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
             + R  +  P+ FP  CP C + V +D      +          + C A+  E L++F 
Sbjct: 424 EEHLRPTNTAPYRFPETCPECSTIVEQDEGGVYIR-------CPNINCPARFRESLRYFA 476

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR A +IEGLG + ++    S      ++  +D++ L  ++             G+ SV 
Sbjct: 477 SRQAMDIEGLGTKLVEQLVSSR----LVQSISDLYRLVDKRAELLELERL----GEKSVD 528

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           +L   +   R   L R + +L IRHVG   A+ LA+ + S    + +             
Sbjct: 529 SLLAGLEASRQQPLWRLLTALNIRHVGQRTAQILAERFGSMDRLSAQT----------IE 578

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKL 652
            L   P VG++IAQ++  F+        +E L    L   + S  +        +  K  
Sbjct: 579 ELSATPEVGEVIAQSVHHFFHTEYGSKLIEELKNLGLNLGTESEQKQIAATEGVLSGKTF 638

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL  + R + +E +   G   ++ +S+KT  ++ G+N GSKL KAQ LGV ++NE 
Sbjct: 639 VVTGTLPSMGREEIEELIRLHGGHAASSVSKKTSFVVAGENAGSKLTKAQSLGVPVINEA 698

Query: 713 QFLFLLQQ 720
           +F+ L+ +
Sbjct: 699 EFMKLIGK 706


>gi|224369899|ref|YP_002604063.1| LigA1 [Desulfobacterium autotrophicum HRM2]
 gi|254781310|sp|C0QJ86|DNLJ_DESAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|223692616|gb|ACN15899.1| LigA1 [Desulfobacterium autotrophicum HRM2]
          Length = 685

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 249/722 (34%), Positives = 388/722 (53%), Gaps = 58/722 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S ++ +KE   L +++  H+  Y+    P+I D EYD + +R  AI   FP+L     P+
Sbjct: 7   SFDRIKKEARLLREQLHVHNINYHVKDDPVISDGEYDRMMQRLIAIETQFPEL---STPD 63

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  +IG +   +     H+IP  SL+  ++ +D+  F  R  +     D   I +T+EP
Sbjct: 64  SPTRRIGAKALTAFETAEHAIPMQSLDNAFSDQDVIDFHNRTAKILNTSD---IRYTVEP 120

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP----RVLSLNIPEIIEVR 188
           K+DG  + +RYE+G    A  RGDG  GE ++   R IP++P       +  IP+++EVR
Sbjct: 121 KLDGVAVELRYEQGSLTLALTRGDGTMGEVITDNARTIPSVPLKLAPAGNGTIPDVLEVR 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV I+  DF  LN + +A G   +ANPRNAA+G LR+L+      R L  FV+G+G+  
Sbjct: 181 GEVIINSKDFEGLNKKRLATGEPLFANPRNAAAGSLRQLDSRVTAKRPLEIFVYGVGRAQ 240

Query: 248 EIFAKGQYEMLQKM----RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           E+ A         +    + LGF +N  +R   +   ++  +   +++R  L Y+IDG+V
Sbjct: 241 ELMANFDIGSHSALLESLKRLGFRINPLIRSGLSLTEVLDRFKAFETMRQDLDYEIDGMV 300

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVD+   Q++LG +ARSPRW I++KF   + +T + DI +Q+GRTG LTPVA LEPVNI
Sbjct: 301 IKVDDIVFQERLGTKARSPRWAIAYKFPAMEETTVINDIIVQVGRTGTLTPVAILEPVNI 360

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG ++  A+LHN+D I+            +DIR+ D VLVKRAG+VIPKVV  +   R  
Sbjct: 361 GGVMVARASLHNQDEIQ-----------NKDIRINDTVLVKRAGDVIPKVVKPVTALRTG 409

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             + F  P+ CP+C S V R  N       AA +C    +C AQ  +RLKHFVS+  F++
Sbjct: 410 SERVFVMPTHCPVCHSPVRRLDNE------AAVKCINA-SCKAQLKQRLKHFVSKGGFDM 462

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG + +D           +   AD+FTL R    +          G+ S TN+  +I 
Sbjct: 463 EGLGTKLIDQLVDRT----LVGSFADLFTLDRETLAAM------DRMGEKSATNIVQAIE 512

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + + I L+RF+F+LG+ H G   A+ L+  + + +   +              +L  +  
Sbjct: 513 RSKRIPLKRFLFALGMAHTGESAAQLLSSTFFTLEALLKA----------SAEALGAIEG 562

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-----SEIENKKLVFTGTL 658
           VG   A ++V F+ NP N   +  +++             +     +    K++V TGTL
Sbjct: 563 VGPKTADSVVAFFANPDNQETIARMMENGVVIENHTVVESAALDNATFFSEKRVVLTGTL 622

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R +A++ + + GA V + +S+ TDI++ G+  GSKL KA+ LGV IM+E+ FL  L
Sbjct: 623 GTLTRSEAKQRLEEQGARVVSSVSKNTDILVAGEASGSKLVKARSLGVTIMDEQTFLEHL 682

Query: 719 QQ 720
            +
Sbjct: 683 DR 684


>gi|148927169|ref|ZP_01810794.1| DNA ligase, NAD-dependent [candidate division TM7 genomosp. GTL1]
 gi|147887384|gb|EDK72833.1| DNA ligase, NAD-dependent [candidate division TM7 genomosp. GTL1]
          Length = 675

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 214/717 (29%), Positives = 365/717 (50%), Gaps = 50/717 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++    R+    L + +S +   YY   +P + D+ YD+L      +    P+L  +   
Sbjct: 1   MTKPHLRERAIKLRELLSQYSYEYYVLDRPSVADAIYDSLFGELKKLEAEHPELITA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       KV H    LSL  +++ E++  ++ R+ +    + D  + F  E
Sbjct: 58  DSPTQRVGGVPIAKFQKVEHRTRMLSLNDVFSREEVEAWLLRVRK-LAPEMDEKVEFFAE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL------SLNIPEII 185
            K+DG   ++ YE GK V A  RGDG  GEDV++ +R IP++P  L         +  I 
Sbjct: 117 VKMDGLACSLIYENGKLVRAVTRGDGLVGEDVTSNVRTIPSVPLALRTNKEDWRFLKGIT 176

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGE+ + K DF  LN ++   G+K YANPRN A+G +R+L+P     R L F  + L 
Sbjct: 177 EVRGEIVMFKKDFELLNAQLEQEGKKTYANPRNLAAGTIRQLDPRLVAQRKLYFLAYDLL 236

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           +             + +R LGF  N   +   +   +V +    +  R  LPY+ DG+V 
Sbjct: 237 RDDPAEVPTWEMAYRIVRELGFRSNRDAKVIQSVDELVEFAESWEKKRFDLPYNTDGMVI 296

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K+++ +L + LG   ++PR  I++K+  +QA+TR+ DI + IGRTG  TPVA LEPV I 
Sbjct: 297 KLNDRALYRALGVVGKNPRGAIAYKYPAEQATTRIKDIFVSIGRTGAATPVAMLEPVVIA 356

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ +  ATLHNED +K            + + +GD V+V++AG++IP+V+  I   R+  
Sbjct: 357 GSTVQMATLHNEDEVKR-----------KGVLIGDTVVVQKAGDIIPEVISPIEKLRNGS 405

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            + F  P  CP C++ +VR          A  RC   + C A+    ++HF S+ A +I+
Sbjct: 406 EKAFKMPKNCPECETDLVRPEGE------AVWRCPNPI-CPAKTWRSIQHFASKAALDID 458

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G++ +         A  I+  AD++ L++ Q         +  F D+S   L D+I  
Sbjct: 459 GMGEKNVAALLD----AGLIKDAADLYVLKKEQI------LELERFADISAGKLIDAIAA 508

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           +++  L +F+F+LGIRHVGA+ A  +  ++ S     Q               L  V  V
Sbjct: 509 KKHPPLAKFLFALGIRHVGAQTAIDVTAHFGSLTAIRQAT----------IDQLHEVEGV 558

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G+++A++IV ++++P +   ++   K         +      +     V TG+L  + R 
Sbjct: 559 GEVVAESIVAWFEDPEHQALLDKFEKYGVQPQDVKQAPTKGPLAGIHFVITGSLHSLDRE 618

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +A + +  LG +    + + TD ++ GDN  GSKL KA++ G KI++E++   ++++
Sbjct: 619 EAADKIRALGGIFQTAVGKNTDYLVAGDNVGGSKLAKAEKFGTKIIDEQKLRDMIRE 675


>gi|11967289|gb|AAG42042.1| NAD-dependent DNA ligase [Aquifex pyrophilus]
          Length = 719

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 234/724 (32%), Positives = 380/724 (52%), Gaps = 51/724 (7%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           ++  ++ LS+E+A++    L++ I +HD  YY  + P+I D +YD L R    I   FP 
Sbjct: 20  RIKSLKDLSLEEAKRLAEELKEVIRFHDYKYYVQASPVISDYDYDRLFRALKEIERKFPQ 79

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
                 P+ P  ++  E+      V H  P LSL+  +  E+L+++  R+      +   
Sbjct: 80  FI---TPDSPTQRVASEITGEFPTVKHYAPMLSLDNAYTEEELKEWDRRVRELTGFEV-- 134

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + +T+EPK+DG  I + Y+   FV  A RGDG  GED++  ++ I TIP     +   I
Sbjct: 135 -VEYTVEPKLDGAGIALVYKDDIFVRGATRGDGEYGEDITNNLKTIKTIPLKAEFSRFGI 193

Query: 185 I--EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD---ITRYLNFF 239
              E+RGEV I+K +F  LN E I  G  P+ANPRNAA+G +R+ +P +          +
Sbjct: 194 KLAEIRGEVVINKEEFKKLNQERIEEGLPPFANPRNAAAGSIRQKDPKEVAKRRLEAVVY 253

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
                +  E   K  YE L+ +  LGF       +       ++ Y  E +  R T PY+
Sbjct: 254 QLSYVEPPERDPKTHYESLKMLDTLGFKTLFKDTKLCRGIDEVIEYCKEWEEKRDTYPYE 313

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KV++  L ++LG  +  PRW I++KF  ++A T+L+D+  Q+GRTG +TPV +L
Sbjct: 314 IDGMVVKVNDRRLYEKLGYTSHHPRWAIAYKFKPRRAVTQLVDVVFQVGRTGAITPVGKL 373

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV +GG  +++ +L NED+I+            +DIR+GD VLV+RAG+VIP + D++ 
Sbjct: 374 EPVQVGGVTVSSVSLFNEDFIR-----------EKDIRIGDYVLVERAGDVIPYIADVLK 422

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            +R  + +   FP  CP C S +V+  +        A RC   + C AQ + R+KH+ SR
Sbjct: 423 EKRSGEEREIVFPERCPSCGSELVKLPDE------VARRCIN-IGCPAQSVLRVKHWASR 475

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           +A +I GLG   +   F        +R       +          +  + GFG+ S  NL
Sbjct: 476 EAMDIRGLGDATVKLLFNR----GLVR------DVGDLYYLKLLDLLRLPGFGERSALNL 525

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I + +N  ++R ++ LGIR+VG+  A+ +++   S                     +
Sbjct: 526 LRAIEESKNRPIDRVLYGLGIRYVGSTTAKKISEIINSIWELKDIP----------IERI 575

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
           +R+  VG  +A++I EF+  P N+  +E L K       +  + ++  ++ K  VFTGTL
Sbjct: 576 MRLEGVGYKVAKSIKEFFSVPENLKVLEKLEKAGVNLEKKKTEKIADVLKGKTFVFTGTL 635

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
           +   R KA E V  LG   S  ++ +TD ++VG  PG +KLEKA++ GVK + EE+F+ +
Sbjct: 636 ECCSREKAGEIVESLGGKFSNSVTSRTDYLVVGKEPGRTKLEKAKKYGVKTITEEEFINM 695

Query: 718 LQQY 721
           ++ Y
Sbjct: 696 IKDY 699


>gi|297570387|ref|YP_003691731.1| DNA ligase, NAD-dependent [Desulfurivibrio alkaliphilus AHT2]
 gi|296926302|gb|ADH87112.1| DNA ligase, NAD-dependent [Desulfurivibrio alkaliphilus AHT2]
          Length = 680

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 241/709 (33%), Positives = 382/709 (53%), Gaps = 47/709 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            EQAR+ ++ L ++I YH+  YY    P I D+EYDAL R    +   +P LA +   + 
Sbjct: 11  KEQARQRVAELREQIRYHNHRYYVLDDPEIPDAEYDALFRELQELEERYPGLAGA---DS 67

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E       V H +P LSLE  +N  ++  F+ R+ RF       ++    EPK
Sbjct: 68  PSRQVGAEPLAQFAPVAHRLPMLSLENAFNEGEISDFLLRLGRFLHTDQVPALH--AEPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGE 190
           +DG  + + YE G F   + RGDG +GE+++A +  I TIPR L       P  +E+RGE
Sbjct: 126 LDGLAVELVYEDGLFTLGSTRGDGFTGENITANLATIATIPRRLKTGGNPPPARLEIRGE 185

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V +S   F  LN      G   +ANPRNAA+G LR+L+P     R L FF +G   ++ +
Sbjct: 186 VCLSITGFKELNRRRGEAGESLFANPRNAAAGSLRQLDPAITADRPLEFFAYGAADSAAL 245

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q ++L+++   G  +    R        ++++  +   R  +PY+IDG+V KV++ 
Sbjct: 246 AVTTQAQLLEQLHAFGLQLIPHGRVCPDLETALAHFRFLDEQRRQMPYEIDGMVLKVNDL 305

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQK+LG +ARSPRW ++ KFA  QA+T+L+ ++ Q+GRTG +TPVA LEPV +GG L++
Sbjct: 306 ALQKRLGAKARSPRWAVAAKFAAVQAATKLIGVEFQVGRTGAVTPVAVLEPVKVGGVLVS 365

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHNED IK            +D+R+ D VLV+RAGEVIP+VV  + ++R  D +P  
Sbjct: 366 RATLHNEDEIKR-----------KDLRLHDTVLVQRAGEVIPEVVKPVADKRRGDEKPIQ 414

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C   ++R          A  RC     C AQ+L  L HF S+   +I+GLGK+
Sbjct: 415 LPANCPECDHALIRKEGE------AVRRCPNPQ-CPAQRLRSLIHFCSKAGLDIDGLGKK 467

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            ++   ++      +    DI+ L+  Q         + G+G+ S   + D+I   ++  
Sbjct: 468 AVELLVQT----GLVGDIPDIYRLRPEQL------APLPGWGEKSAAKVCDAIAAAKSPK 517

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +LGIRHVG   A+ LA+++ S +   Q +              + V  +G  +A
Sbjct: 518 LARLLAALGIRHVGEVNAQVLARHFPSLEALQQAME----------EDFLEVEGIGSQVA 567

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            ++V F+++P     +  L +         +      ++N+  +FTG+L  + R++A+  
Sbjct: 568 ASLVTFFKDPTTTAMLAQLKELGLTISPEEQPAQQLPLQNRVFLFTGSLAGMSRNEAKAR 627

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           V +LG  V+  L+RK   ++ GD PGSKL KA++L ++I+ E  F  LL
Sbjct: 628 VKELGGQVATGLNRKVTHLVCGDKPGSKLTKARELELEILTEADFARLL 676


>gi|320334549|ref|YP_004171260.1| DNA ligase [Deinococcus maricopensis DSM 21211]
 gi|319755838|gb|ADV67595.1| DNA ligase [Deinococcus maricopensis DSM 21211]
          Length = 671

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 221/708 (31%), Positives = 349/708 (49%), Gaps = 45/708 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
                 L Q I +H+  YY+   P I D+EYDAL R   A   A P+      P  P  K
Sbjct: 3   EARYRELIQTIQHHNRLYYEQDTPEISDAEYDALMRELRAAEAAHPEWI---TPESPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSIFFTLEPKIDG 136
           +GG  + +   VTH  P  SL+ ++N E+L  +  ++ R      D     +T E KIDG
Sbjct: 60  VGGAPSSAFQPVTHPTPMTSLDNVFNDEELTDWGAKLARALGAAPDTADYAYTCELKIDG 119

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + Y  G   +AA RG+G  GE V+  +  IP IPR L     E+ EVRGEVY+S+ 
Sbjct: 120 LSVNLYYVDGVLQWAATRGNGVVGEIVTEQVLTIPEIPRTLPGLKGEL-EVRGEVYLSRE 178

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQY 255
           +F + N     +G     NPRN A+G LR+ +P +   R L   ++ LGK   + A+ Q+
Sbjct: 179 EFASYNALAEELGLPLLKNPRNGAAGALRQKDPKETAKRRLRAILYALGKRDGVPARTQW 238

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++L  +   GFP +    +        +Y+  M + R+ LP+D DG V K+D+   Q+  
Sbjct: 239 DVLTWLAEQGFPTSAYSERVQGLPAAAAYHARMVADRANLPFDADGTVIKLDDLRAQEDA 298

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW I++KF  ++  T+LL I I +GRTG L P+A LEP  I G+ ++ ATLHN
Sbjct: 299 GFTSRAPRWAIAYKFPVEEVQTKLLSITINVGRTGKLAPLAHLEPRLIEGSTVSKATLHN 358

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED+I+ L           D+R+GD VLV++AG VIP++V  +   R   ++PF FP+ CP
Sbjct: 359 EDFIRNL-----------DLRIGDTVLVRKAGGVIPEIVRNLTELRADHSEPFEFPTHCP 407

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C    VR          A   C    AC AQ  ERL++FVSR A +I GLG++ ++   
Sbjct: 408 ECGHAAVRAEG------DANTYCVNP-ACPAQAYERLRYFVSRGAMDIRGLGEKLIEQLL 460

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       +R  AD ++L   Q         +   G     N+   + + +   L R + 
Sbjct: 461 Q----GGLVRDAADFYSLTEAQLAG------LERSGTKKAQNVLRELEESKKQPLWRLVN 510

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LG+  VG   A+ L + + S                     +  +  VG+ +AQ++   
Sbjct: 511 ALGMPGVGERNAQVLTRAFPSLDALLAATP----------EQIASIHGVGETLAQSVHAA 560

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
             +      +  L      ++   +     ++     V TGTL +  R   + ++  LGA
Sbjct: 561 LHDATMTDLLGRLRAADLNTVEEVDAPQGEQLAGTTFVITGTLSR-PRDVFKAHLESLGA 619

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            +S  +++KT  ++ G++ GSKL+KA++ GV I++E     LL + + 
Sbjct: 620 RISGSVTKKTTYLLAGEDAGSKLDKARENGVTILDEAALGALLTERDA 667


>gi|326797492|ref|YP_004315311.1| DNA ligase [Sphingobacterium sp. 21]
 gi|326548256|gb|ADZ76641.1| DNA ligase [Sphingobacterium sp. 21]
          Length = 672

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 205/714 (28%), Positives = 367/714 (51%), Gaps = 48/714 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A   + +L +E++ H+  YY  ++P I D ++D       A+   +P+     DP
Sbjct: 1   MQRNDALSRIEALTKELNDHNYKYYVLAQPSISDFDFDQKLAELAALEKDYPEFL---DP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG++      V H  P LSL   ++ ++L+ F  RI +       +   +  E
Sbjct: 58  DSPTQKVGGDITKQFKTVRHKWPMLSLSNTYSEKELKDFDERIRKVLG----DDFEYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGE 190
            K DG  I++ YE+G       RGDG  G++V++ I+ I ++P  +   + P++ E+RGE
Sbjct: 114 LKFDGLSISLTYEQGVLTRGVTRGDGTQGDEVTSNIKTIKSVPNKIKSGHFPDLFEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVHGLGKTSE 248
           V++ +  F  LN E +     PYANPRN A+G ++  + +++ +     F         +
Sbjct: 174 VFMHRAAFERLNKERLENDEIPYANPRNFAAGTIKLQDSSEVAKRPLDCFLYFLYMDNRD 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K  +E L+ ++  GF V+   +   T   ++ + +     R  L YDIDG+V KV+ 
Sbjct: 234 RLFKTHWESLEAVKSWGFHVSEHTKLCRTIDEVLQFISYWDDARHKLSYDIDGIVIKVNS 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           ++ Q +LG  A+SPRW I++K+  ++  T L  +  Q+GRTG +TPVA LEPV + G  +
Sbjct: 294 YAQQHELGFTAKSPRWAIAYKYKAEEVETILKSVSYQVGRTGAVTPVANLEPVQLSGTTV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN + I  L           D+   D V+V++ GE+IPK++ +  ++R PD +  
Sbjct: 354 KRATLHNANEITRL-----------DLHELDTVMVEKGGEIIPKIIGVNKDKRVPDTKQI 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           ++P+ CP+C + ++R          A H C   L C  Q + +++HF+SR A +IEG+G 
Sbjct: 403 AYPTHCPVCNTVLIRKEGE------AVHYCPNELGCPPQIVGKIQHFISRKAMDIEGMGN 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++  +K       ++  +D++ L   ++    ++E I  FG+ S+ N+   I K +  
Sbjct: 457 ETVEVLYKK----GLLKQISDLYQLHHHKE----ELEQIERFGEKSINNMLLGIQKSKER 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
             ++ +F LGIR+VG  IA+ LA  + +  N  Q               +  V  +G+ I
Sbjct: 509 PFQKVLFGLGIRYVGETIAKKLANSFKNIDNLIQA----------SVEEIAAVDEIGERI 558

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKA 666
           AQ++ E++ N  ++  VE L  E        E+    S+++ +K  V +G  +   R   
Sbjct: 559 AQSVKEYFSNTLHLHQVEILKGENLQFAIIEEEFQLNSNKLADKSFVISGVFEHYSREDL 618

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            + + Q G  + + +S K + ++ GDN G SKL KAQ+  + I++E + + ++Q
Sbjct: 619 GKIIVQNGGKLLSGISAKLNYLVAGDNMGPSKLAKAQKFNIPIISEVELIKMIQ 672


>gi|104773603|ref|YP_618583.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|122984006|sp|Q1GBF7|DNLJ_LACDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|103422684|emb|CAI97297.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 671

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 207/714 (28%), Positives = 358/714 (50%), Gaps = 49/714 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S+E+A++E+  L  ++      YY+   P++ D  YD    R   +  A+P+L      +
Sbjct: 4   SLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYPELK---SAD 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
               ++GGE+N  L KV H +P LS+  +++ E+L +F  R+ +       + + + +E 
Sbjct: 61  SITQRVGGEVNSDLPKVEHPVPMLSMGDVFSKEELAEFDQRVQKAIG----HPVAYNVEL 116

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  +++ YE+G    A+ RG+G  GEDV+  ++ I  +P+ L   I    EVRGE Y
Sbjct: 117 KIDGLSLSLEYEEGCLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGECY 174

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +SK  F  LN E    G   +ANPRNAA+G LR+L+P    +                  
Sbjct: 175 MSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAGID 234

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q++ + +M  LGF  N   R+      +  Y +E    R +LPY IDG+V KVD+ +LQ
Sbjct: 235 SQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDDLALQ 294

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G+ +  A+
Sbjct: 295 ADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGSTVARAS 354

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D +  L           D+R+GD V + +AG++IP++ ++++++R  D+ P+  P+
Sbjct: 355 LHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPYEVPT 403

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +V            A RC    +C AQ  E + HF SR A NI GLG + + 
Sbjct: 404 KCPSCGEDLVHLDEE------VALRCINP-SCPAQVEEGITHFASRQAMNIAGLGPKIVK 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                +     +   AD++ L     +       +  F + S+ NL  +I++ R  S+E 
Sbjct: 457 QLIAKD----LVHNVADLYYLTADDLS------QLDHFKEKSINNLLVAIDQSRKNSVEL 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGI +VG + A+ +A+ + +    A                L  +  +G  IA+++
Sbjct: 507 VLFGLGIDNVGGKAAQLIARKFKNMSKIASA----------SVQELTAIDTIGMTIAESL 556

Query: 613 VEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
             ++Q       +  L +        G   +   +  + K +V TG L    R +  + +
Sbjct: 557 TAYFQQEEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAEFTKKL 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             LGA V+  +S+KT+ ++ G++ GSKL KA+ L +  + E + +  +++ +T 
Sbjct: 617 QALGAKVTGSVSKKTNCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDTE 670


>gi|58336856|ref|YP_193441.1| DNA ligase [Lactobacillus acidophilus NCFM]
 gi|227903415|ref|ZP_04021220.1| DNA ligase [Lactobacillus acidophilus ATCC 4796]
 gi|75357942|sp|Q5FLL4|DNLJ_LACAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|58254173|gb|AAV42410.1| DNA ligase [Lactobacillus acidophilus NCFM]
 gi|227868891|gb|EEJ76312.1| DNA ligase [Lactobacillus acidophilus ATCC 4796]
          Length = 668

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 210/715 (29%), Positives = 366/715 (51%), Gaps = 51/715 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +++++A+KE S L  ++    D YY    P + D+ YD    R   +   FP++   
Sbjct: 1   MADITLDEAKKEASLLRNQLDKWADAYYSKDAPEVEDNVYDQKYSRLLELEKQFPEIV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GGE++    KV H+IP LS+  +++ ++L+ F  R+ +       + + +
Sbjct: 59  -TPDSITQRVGGEIDSDFTKVEHAIPMLSMGDVFSKDELKDFDQRMQKLVG----HPVEY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ YE GK + A+ RG+G+ GEDV+A  R I  IP+ L   +   IEVR
Sbjct: 114 NVELKIDGLSLSLEYENGKLMRASTRGNGYVGEDVTANARYIADIPQTLPEPL--TIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN+E    G   +ANPRNAA+G LR+L+P    +              
Sbjct: 172 GECYMGKEAFAKLNEERENEGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q+E +++M+ LGF  N   ++  +   I ++ +E  + R +L Y IDG+V K+D+
Sbjct: 232 EDITSQHEAIKRMQELGFHTNETGQKLASLEEIFAFIDEYTARRDSLAYGIDGIVLKIDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            ++++ LG   + PRW I++KF  ++  T + DI   +GRTG++TP A ++PV + G  +
Sbjct: 292 LNIERSLGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHN DY+             +D+R+GD V + +AG++IP++ ++++++R  D+ P+
Sbjct: 352 ARASLHNPDYL-----------NEKDVRLGDTVKLHKAGDIIPEISEVVLSKRPVDSVPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C  ++V   +        A RC    +C AQ  E + HF SR A NI GLG 
Sbjct: 401 VIPENCPSCGHKLVHLQDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +     ++     +   AD++ L             +  F + S+ NL  +I+  +  
Sbjct: 454 KIVKQLIAND----LVHNVADLYHLSAEDL------AQLDHFKEKSINNLLTAIDNSKKN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  I  LGI HVGA+ AR +A+ + +                     L  +  +G  I
Sbjct: 504 SVELLITGLGIDHVGAKAARLIAQKFKNLAKIMSL----------GVQDLASIDTIGMTI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           A+++  ++  P     +  L K             E    +  ++K +V TG L+   R 
Sbjct: 554 AESMTTYFAQPEAQEMIADLEKSGLNMEYLGEDEPEDIPDNPFKDKTVVLTGKLEHYTRS 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  + +  LGA V+  +S+KT+ +I G + GSK  KA+QLG+ ++ EE+ +  ++
Sbjct: 614 EFTKRLQALGAKVTGSVSKKTNYVIYGQDAGSKYNKAEQLGIPLLTEEEAIAQIK 668


>gi|256852262|ref|ZP_05557648.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 27-2-CHN]
 gi|260661706|ref|ZP_05862617.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 115-3-CHN]
 gi|282934844|ref|ZP_06340077.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
 gi|297205571|ref|ZP_06922967.1| NAD-dependent DNA ligase LigA [Lactobacillus jensenii JV-V16]
 gi|256615308|gb|EEU20499.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 27-2-CHN]
 gi|260547453|gb|EEX23432.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 115-3-CHN]
 gi|281301075|gb|EFA93386.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
 gi|297150149|gb|EFH30446.1| NAD-dependent DNA ligase LigA [Lactobacillus jensenii JV-V16]
          Length = 669

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 215/716 (30%), Positives = 366/716 (51%), Gaps = 52/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+ + A++E+ +L ++++   + YY    P + D+ YD   ++   +   FP+L   
Sbjct: 1   MAKLNKKNAQEEIETLRKKLNTWAEQYYAQDAPSVEDAVYDQNYQKLVELEKQFPELV-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    ++GGE+   L KV H +P LS+  +++ ++L +F  RI +         + +
Sbjct: 59  -TPDSITQRVGGEIKSDLGKVEHQVPMLSMGDVFSKDELFEFDQRIQKLVG----GPVAY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y  GK + A+ RG+G  GEDV+  ++ I  IP++L   +    EVR
Sbjct: 114 NVELKIDGLSLSLEYVDGKLIQASTRGNGRIGEDVTKNVQYIDDIPKILPEKL--TTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  FL LN E    G   +ANPRNAA+G LR+L+P    +              
Sbjct: 172 GECYMGKAAFLKLNTERDENGEAIFANPRNAAAGSLRQLDPKVTKKRNLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ +Q+M  LGF  N   R+      + +Y +E  S R +L Y IDG+V KVD+
Sbjct: 232 KEITSQHQAIQQMSKLGFHTNETGRKLANLDEVFAYIDEYTSKRDSLSYGIDGIVLKVDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQKQLG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PV + G  +
Sbjct: 292 LTLQKQLGNTVKVPRWEIAYKFPPEEQETIVHEIVWTVGRTGVVTPTAVMDPVELAGTTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A LHN D +K            +D+R+GD V + +AG++IP++ ++++++R  ++Q +
Sbjct: 352 SRAVLHNPDLLK-----------QKDVRIGDTVKLHKAGDIIPEISEVVLSKRPANSQVY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C   +V            A RC    AC AQ  E + HF SR A +I GLG 
Sbjct: 401 EIPTECPSCGQSLVHLEGE------VALRCINP-ACPAQIEEGIIHFASRPAMDIMGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +    + +     ++  AD++ L             +  FGD S++NL  +I+  R  
Sbjct: 454 KIVRQLIQHD----LVKDVADLYHLTADDL------AELDHFGDKSISNLLTAIDNSRQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  +  LGI HVGA+ A  + + + +     Q               L  +  +G+ I
Sbjct: 504 SVELLLNGLGIDHVGAKAALLIVQRFKNLNKIMQA----------SVSDLTAIDTIGETI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSP-----SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           A++I  ++        V+ L+               E+ V +  +NK +V TG L    R
Sbjct: 554 AESITTYFAQASVQKLVQELIDSGVNIDYLGEDVSEEEIVDNFFKNKTVVLTGKLAHFTR 613

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  + +  LGA V++ +S+KTD +I G + GSKL KA+ L + ++ EE+ +  +Q
Sbjct: 614 SEFTKKLESLGAKVTSSVSKKTDYVIYGTDAGSKLTKAESLKIALLTEEEAIEKIQ 669


>gi|319892947|ref|YP_004149822.1| DNA ligase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162643|gb|ADV06186.1| DNA ligase [Staphylococcus pseudintermedius HKU10-03]
          Length = 667

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 238/714 (33%), Positives = 370/714 (51%), Gaps = 53/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + +  L + +  ++  Y+    P + DSEYD L      I    P+L  S   + 
Sbjct: 1   MSSIAQRVEILHKLLHQYNYEYHVQDNPSVPDSEYDKLLHELIDIETKHPELKTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N  DLRKF  R+           + +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLSNAFNEADLRKFDQRVRDAVG-----EVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  GK V    RGDG +GED++  ++ I  IP  L   I    EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGKLVQGLTRGDGTTGEDITENLKTIYAIPLTLDKKIS--FEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+   A   +P+ANPRNAA+G LR+L+      R L+ F++ +   +E+ A 
Sbjct: 171 PRQSFLKLNEAKAARDEQPFANPRNAAAGSLRQLDSKLAAARKLDIFLYSINDFTELDAS 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N+   +  T   ++ Y  +  + R  LPYDIDG+V KV+    Q
Sbjct: 231 SQSEALDELDELGFKTNHEREKVKTIDEVLEYIKKWTNQREQLPYDIDGIVIKVNHLEHQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGFTQKSPRWAIAYKFPAEEVITELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             +DIR+GD V++K+AG++IP+VV +I++ R   A+ +  P+
Sbjct: 351 LHNEDLIH-----------EKDIRIGDSVVIKKAGDIIPEVVRVILDRRPEGAETYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + ++
Sbjct: 400 HCPSCDHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIE 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +        I+  ADIF L +           +   G+     L D+I   +  SLE 
Sbjct: 453 QLYTHA----LIKDVADIFYLTKEDL------LPLERMGEKKAQKLIDAIETSKARSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +                     L+ +  VG+ +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETMDRLLTVTE----------DELVEIYDVGEKLAQSL 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSS--EIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +E L  +      + +K   +    E   K +V TG LQ++ R++A  
Sbjct: 553 VTYLENEDIRALIEKLQSKGVNMTFKGQKLSQIEGHPEFAGKTIVLTGKLQQMTRNEATN 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG  I  E+ F+    + N
Sbjct: 613 WLKLQGAKVTSSVTKSTDLVIAGEDAGSKLTKAQSLGTMIWTEQDFIDKQNEIN 666


>gi|322375289|ref|ZP_08049802.1| DNA ligase, NAD-dependent [Streptococcus sp. C300]
 gi|321279552|gb|EFX56592.1| DNA ligase, NAD-dependent [Streptococcus sp. C300]
          Length = 652

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 215/700 (30%), Positives = 358/700 (51%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   ERMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEL-----PQPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGVLVVGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q ++L
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A +   I  +  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 EHLEQLGFVVNPKRILAKSIDEIWDFIQEVGQEREKLPYDIDGVVIKVNDLAGQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR GD V+V +AG++IP V+ ++ ++R  + +    PS CP C 
Sbjct: 352 I-----------AEKDIRKGDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPSNCPSCD 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SHLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ L+            + G  + S + LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLKEEDF------LLLEGVKEKSASKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +++ S +N AQ           D   +  +  +G +IAQ++  ++  
Sbjct: 503 IRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGGVIAQSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   ++ L +       +       + +    +V TG L+++ R +A+  +  LGA V
Sbjct: 553 EGSKILLDELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLTRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KT++++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSVSKKTNLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652


>gi|284042834|ref|YP_003393174.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684]
 gi|283947055|gb|ADB49799.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684]
          Length = 684

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 224/725 (30%), Positives = 358/725 (49%), Gaps = 50/725 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S     +  + L +E++YH   YY    P I D  YDAL     A+  A P+L     P
Sbjct: 1   MSAGPDAQRAAVLRRELAYHGHRYYDLDDPEIGDDAYDALLDELRALEAAHPELL---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK--DDNSIFFT 129
           + P  ++GG +   L KV H    LSL    + ++L  ++ R+     ++  +D    + 
Sbjct: 58  DSPTQRVGGAVVSELRKVRHRRRMLSLANARSEQELLAWVERMRAHLAREGIEDPRFEYV 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +EPK+DG  +++ YE G  +    RGDG  GEDV+  IR I  IP+ +    P  +EVRG
Sbjct: 118 VEPKVDGLAMSLHYENGTLIRGVTRGDGEIGEDVTHNIRTIEQIPQQIDGA-PAWLEVRG 176

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EVY+S  DF ALN      GR  + NPRN+A+G +R+L+      R L+ + +G+G+T  
Sbjct: 177 EVYMSLADFEALNLRRAEEGRSTFMNPRNSAAGTIRQLDSRLAAERPLSMWCYGIGETEG 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           I     +E LQ +R  GFPVN+ +R+  T   +V+     +  R +L ++IDG+V KVD+
Sbjct: 237 ISFSTHWESLQWLRAHGFPVNDEIRRIRTAEKVVARCERWQERRGSLDFEIDGVVVKVDD 296

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ++LG   R PRW I+ KF    A T+L D+   +G+ G L P A LEPV++GG  +
Sbjct: 297 VELQRRLGVVGRDPRWAIAWKFPPTTAVTQLHDVMWNVGKFGTLHPFAVLEPVHVGGVTV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV--VDIIVNERHPDAQ 426
             ATLHNE+ +             +D+R GD V+V RAG+VIP+V      V ER   A 
Sbjct: 357 KLATLHNEEDLAR-----------KDVRPGDDVIVLRAGDVIPQVLSPAPHVAERSDRAP 405

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P+ CP+C +  V+                    C  ++ + L+H+VSR A +++G+
Sbjct: 406 VPRPPARCPVCDTPTVKGEG--------VFTKCPNRDCPGRRWQLLQHYVSRGAMDVDGI 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++Q+    +       +R P D + L   Q         +  FG+VS  N  ++I   +
Sbjct: 458 GEKQVSVLMEH----GLLRTPGDYYRLSAEQLM------QLDRFGEVSARNAVEAIAASK 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
                R +F LGI  VG+   RSLA+ + +                     +   P +G 
Sbjct: 508 ERPFGRVLFGLGIEGVGSVTGRSLAQRFRTIDALTAA----------SAEEIAATPGIGP 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I+ + I +  ++      ++ L                  + +K +V TGTL  + R +A
Sbjct: 558 IVGRLIHDQLRDEHLRAVIDDLRAHGVRMEEDGPPPGEGPLADKAIVLTGTLPTLTREEA 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            E +   G  V++ +SR+TD ++ G+  G+KLEKA++L V +++E+    LL+       
Sbjct: 618 TERILAAGGRVTSSVSRRTDYVVAGERAGTKLEKAERLRVPVLDEDGLEALLRGAGDAGA 677

Query: 727 IHDDD 731
             +DD
Sbjct: 678 --EDD 680


>gi|323464000|gb|ADX76153.1| DNA ligase, NAD-dependent [Staphylococcus pseudintermedius ED99]
          Length = 667

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 238/714 (33%), Positives = 370/714 (51%), Gaps = 53/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + +  L + +  ++  Y+    P + DSEYD L      I    P+L  S   + 
Sbjct: 1   MSSIAQRVEILHKLLHQYNYEYHVQDNPSVPDSEYDKLLHELIDIETKHPELKTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N  DLRKF  R+           + +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLSNAFNEADLRKFDQRVRDAVG-----EVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  GK V    RGDG +GED++  ++ I  IP  L   I    EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGKLVQGLTRGDGTTGEDITENLKTIYAIPLTLDKKIS--FEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+   A   +P+ANPRNAA+G LR+L+      R L+ F++ +   +E+ A 
Sbjct: 171 PRQSFLKLNEAKAARDEQPFANPRNAAAGSLRQLDSKLAAARKLDIFLYSINDFTELDAS 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N+   +  T   ++ Y  +  + R  LPYDIDG+V KV+    Q
Sbjct: 231 SQSEALDELDELGFKTNHEREKVKTIDEVLEYIKKWTNQREQLPYDIDGIVIKVNHLEHQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGFTQKSPRWAIAYKFPAEEVITELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             +DIR+GD V++K+AG++IP+VV +I++ R   A+ +  P+
Sbjct: 351 LHNEDLIH-----------DKDIRIGDSVVIKKAGDIIPEVVRVILDRRPEGAETYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + ++
Sbjct: 400 HCPSCDHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIE 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +        I+  ADIF L +           +   G+     L D+I   +  SLE 
Sbjct: 453 QLYTHA----LIKDVADIFYLTKEDL------LPLERMGEKKAQKLIDAIETSKARSLEN 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +                     L+ +  VG+ +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETMDRLLTVTE----------DELVEIYDVGEKLAQSL 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSS--EIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +E L  +      + +K   +    E   K +V TG LQ++ R++A  
Sbjct: 553 VTYLENEDIRALIEKLQSKGVNMTFKGQKLSQIEGHPEFAGKTIVLTGKLQQMTRNEATN 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++   GA V++ +++ TD++I G++ GSKL KAQ LG  I  E+ F+    + N
Sbjct: 613 WLKLQGAKVTSSVTKSTDLVIAGEDAGSKLTKAQSLGTMIWTEQDFIDKQNEIN 666


>gi|255533202|ref|YP_003093574.1| DNA ligase, NAD-dependent [Pedobacter heparinus DSM 2366]
 gi|255346186|gb|ACU05512.1| DNA ligase, NAD-dependent [Pedobacter heparinus DSM 2366]
          Length = 670

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 212/712 (29%), Positives = 366/712 (51%), Gaps = 46/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + +  + +L +E++ H   YY  + P I D  +D        +  A+P+ A   DP
Sbjct: 1   MSGSEVKTNMDALVKELNQHSYNYYVLAMPTIADYTFDKKLEELAQLELAYPEFA---DP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  K+GG++      V H  P LSL   +N +DLR F  RI +   +    S  +  E
Sbjct: 58  NSPTRKVGGDITKIFTTVPHKWPMLSLGNTYNEQDLRDFDERIKKAIGE----SFEYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
            K DG  I++ Y+  K V A  RGDG  G+DV+A ++ I TIP      ++P + E+RGE
Sbjct: 114 LKFDGLSISLTYDGSKLVRAVTRGDGAKGDDVTANVKTINTIPHQLKEGDVPPLFEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +++ +  F  LN E   +G   YANPRN A+G ++  +  ++ +           T + +
Sbjct: 174 IFMHRAAFERLNKEREELGEVQYANPRNFAAGTVKMQDSKEVAKRPLDCFLYSLNTDKNY 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K  +E LQ ++  GF V    +  N+   + S+    ++ R  L YDIDG+V KV+ ++
Sbjct: 234 FKTHWESLQALKRWGFNVCEHTKLTNSIEDVRSFIKHWENERFKLSYDIDGIVIKVNSYA 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  A+SPRW IS+K+  ++  T L  +  Q+GRTG +TPVA L+PV + G  +  
Sbjct: 294 QQQELGFTAKSPRWAISYKYKAQEVETILDKVTYQVGRTGAVTPVANLKPVQLAGTTVKR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN + I+ L           D+  GD V V++ GE+IPK++++ +++R   A    +
Sbjct: 354 ATLHNANEIERL-----------DLHEGDSVFVEKGGEIIPKIMNVNLDKRKAGALKIIY 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + ++R           A  C    AC  Q + +++HF+SR A NI+GLG + 
Sbjct: 403 PTVCPECATPLIRKEGE------VAFYCPNDEACPPQIIGKIQHFISRKAMNIDGLGDET 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F++       I   +D++TL  +      +++ +  FG+ S+ N+   I   + +  
Sbjct: 457 IETFYQR----GLIAHISDLYTLHEK----AEELKTLERFGEKSIENMLHGIELSKQMPF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIR+VG  +A+ LA    +    A                L  +  +G  IA+
Sbjct: 509 EKVLFGLGIRYVGETVAKKLAYGVKNVDKLASA----------SLEELTAIDEIGQRIAE 558

Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQE 668
           +I+E++    ++  +  L    +   +  +E    S ++  K  V +G  +   R + ++
Sbjct: 559 SIIEYFGKAEHLHQINLLKSYNLKFEVAENEITLQSDKLTGKTFVISGVFENYSREELKD 618

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            +   G  + + +S K + ++ GDN G SKLEKA++L V ++++E  L LL+
Sbjct: 619 MIESNGGKILSGISAKLNYLVAGDNMGPSKLEKAKKLNVPLISQEDLLELLK 670


>gi|326330727|ref|ZP_08197031.1| DNA ligase, NAD-dependent [Nocardioidaceae bacterium Broad-1]
 gi|325951568|gb|EGD43604.1| DNA ligase, NAD-dependent [Nocardioidaceae bacterium Broad-1]
          Length = 702

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 214/731 (29%), Positives = 354/731 (48%), Gaps = 57/731 (7%)

Query: 10  EALSIE---QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + L+ E   + + E   L ++I      YY    P + D+++D   RR + +   FP+L 
Sbjct: 3   DDLTAEAGPEQKSEHQELAEQIEDARYRYYVLDDPTLSDADFDQKWRRINELEEQFPEL- 61

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+ P  K+GG  +     V H     SL+ +++ E+L  +  RI +          
Sbjct: 62  --RTPDSPTQKVGGTFSTEFTAVDHLQRMESLDNVFSFEELAGWHARIAK----DGAGQA 115

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----P 182
               E K+DG  I + YEKG+ V A  RGDG +GEDV+  +R I +IP  L+       P
Sbjct: 116 ELLCELKVDGLAINLLYEKGRLVRALTRGDGRTGEDVTPNVRTIKSIPHRLTGTDEFPVP 175

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
           +++EVRGEV++S   F  LN  ++  G+  +ANPRN+A+G LR+ +P    TR L    H
Sbjct: 176 DLVEVRGEVFLSIEVFDKLNASLVDAGKPMFANPRNSAAGSLRQKDPRVTATRELGMVCH 235

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM-KSIRSTLPYDID 300
           G+G         Q      ++  G P +N V+   T   +  + +   +       ++ID
Sbjct: 236 GIGAREGFQPVAQSHAYDALKAWGLPTSNRVKVLKTLQEVEEFISYFGEHRHDVTEHEID 295

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KVD+ SLQ++LG  +R+PRW I++K+  ++ + +LL ID+ +GRTG +TP   +EP
Sbjct: 296 GVVIKVDDISLQRRLGSTSRAPRWAIAYKYPPEEVNAKLLAIDVGVGRTGRVTPFGVMEP 355

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
             + G+ +  ATLHN   +K            +D+R GD +++++AG+VIP+++  ++  
Sbjct: 356 TKVAGSTVERATLHNAHEVKR-----------KDVRPGDTIILRKAGDVIPEILGPVLPL 404

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R      +  P+ CP C + +      +  +     RC     C AQ  ER+     R A
Sbjct: 405 RPEGLPEWVMPTECPACGTTLA-----EQKEGDKDLRCPNHRGCPAQVRERVFFASGRGA 459

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR-----------QQTSTTKIENILG 529
           F+IEG+G +       +   A  I    DIF L               + +  +      
Sbjct: 460 FDIEGMGYEA----ADALLAAEVITNEGDIFDLDEAGLATTTFFTRAAKKAEKEAGAGDR 515

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
             + +   L  ++ +R+++ L R + +L IRHVG   AR+LA  + S             
Sbjct: 516 VLNANALGLLRNLEERKHVPLWRVLVALSIRHVGPSAARALATEFGSLDAIWAASQ---- 571

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN 649
                   L     VG IIA+AIVE+ Q   +   V+             +++V+  +E 
Sbjct: 572 ------EELAATEGVGGIIAEAIVEWRQVDWHQEIVDKWRAAGVSLADERDESVARTLEG 625

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
             +V TG+L+   R  A+E +   G   +  +S+KTD ++VGDN GSK  KA++LG+ I+
Sbjct: 626 LTVVVTGSLEDFSRDGAKEAIISRGGKAAGSVSKKTDYVVVGDNAGSKAAKAEELGLPIL 685

Query: 710 NEEQFLFLLQQ 720
           +E  F  LL+ 
Sbjct: 686 DEAAFKVLLED 696


>gi|110597868|ref|ZP_01386151.1| DNA ligase, NAD-dependent [Chlorobium ferrooxidans DSM 13031]
 gi|110340593|gb|EAT59076.1| DNA ligase, NAD-dependent [Chlorobium ferrooxidans DSM 13031]
          Length = 674

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 236/711 (33%), Positives = 362/711 (50%), Gaps = 50/711 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            A +E+  L +EI  H+  YYQ +KP I D ++D L  +  A+   FPDL     P+ P 
Sbjct: 6   SASEEILRLRREIERHNRLYYQEAKPEISDYDFDLLLEQLVALEQQFPDLV---TPDSPS 62

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +      V H  P LSL   ++ E++ +F  R+ +    +         E K D
Sbjct: 63  QRVGGTITKEFTAVRHREPMLSLSNTYSPEEVEEFCNRLRKLLLLEGVQEQEMVAELKFD 122

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-------IIEVR 188
           G  +T+ Y     V  A RGDG  G++++  ++ I TIP  L  ++          IEVR
Sbjct: 123 GVAVTLLYRDALLVQGATRGDGVQGDNITVNLKTIATIPLRLEGSLAGELQGEGREIEVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GEVY+ K DF  LN+         +ANPRNA +G L+  +  ++ R    FV    K   
Sbjct: 183 GEVYMPKLDFEHLNETRPE--EDRFANPRNATAGTLKLQDSAEVARRRLSFVAYYLKGLG 240

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 +  L+ +  LGF      R     + I  +  E    R  LPY+ DG+V K+++
Sbjct: 241 DETASHFSRLKMLERLGFHTGGHYRLCREQNEINRFIEEWTERRWKLPYETDGVVLKLND 300

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             L  ++G  A+SPRW I++K+  +QA+T LLD+  Q+GR G +TPVA L+PV + G+ +
Sbjct: 301 VRLWDKIGATAKSPRWAIAYKYPAQQAATELLDVLFQVGRLGTITPVAELKPVLLAGSTV 360

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + +TLHN D I+ L            + V DRV++++AGEVIPKV+ +++ ER  DA+P 
Sbjct: 361 SRSTLHNFDEIERL-----------GLMVHDRVVIEKAGEVIPKVISVVLAERPVDAEPI 409

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           + P  CP C + + +  N        +  C     C AQ   RL HF SR+A +I+ LGK
Sbjct: 410 AVPVVCPECNTPLEKPENE------VSWYCPNEAECPAQIRGRLLHFASRNAMDIKTLGK 463

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +D     +     +R   D++ LQ  Q      +EN+   G  S  NL  ++ + R  
Sbjct: 464 ALVDQLVGMK----LVRDVGDLYLLQEPQ------LENLERMGRKSAQNLVRALAESREK 513

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S ER +++LGIRHVG   AR L+  Y S     Q               L  VP VG I+
Sbjct: 514 SYERLLYALGIRHVGRATARELSAAYPSLDLLRQASE----------EELSTVPDVGPIV 563

Query: 609 AQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           A++IV+F+  P +    E L +     S     + V+   E   ++FTG L++  R KA 
Sbjct: 564 ARSIVDFFAKPSSAALFETLREAGVQVSAAGKPEQVNRNFEGISVIFTGGLERYDRQKAT 623

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E V + G  V   +S+KT +++ G +PGSKLEKA +LGV+++ E++F  +L
Sbjct: 624 ELVIERGGRVVGSVSKKTGLVVAGHDPGSKLEKALKLGVRVVTEDEFDAML 674


>gi|238855396|ref|ZP_04645707.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 269-3]
 gi|260665363|ref|ZP_05866211.1| DNA ligase, NAD-dependent [Lactobacillus jensenii SJ-7A-US]
 gi|282932093|ref|ZP_06337550.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
 gi|238831994|gb|EEQ24320.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 269-3]
 gi|260560867|gb|EEX26843.1| DNA ligase, NAD-dependent [Lactobacillus jensenii SJ-7A-US]
 gi|281303772|gb|EFA95917.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
          Length = 669

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 218/716 (30%), Positives = 364/716 (50%), Gaps = 52/716 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+ + A++E+ +L ++++   + YY    P + D+ YD   +R   +   FP+L  S
Sbjct: 1   MAKLNKKAAQEEIENLRKKLNTWAEQYYAQDAPSVEDAVYDQNYQRLVELEKQFPELVTS 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +    ++GGE+   L KV H IP LS+  +++ ++LR+F  RI +         + +
Sbjct: 61  ---DSITQRVGGEIKSDLGKVEHQIPMLSMGDVFSKDELREFDQRIQKLVG----GPVAY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y  GK V A+ RG+G  GEDV+  ++ I  IP+ L   +   +EVR
Sbjct: 114 NVELKIDGLSLSLEYSDGKLVRASTRGNGRIGEDVTKNVQYISDIPKTLPEAL--TMEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  FL LN E    G   +ANPRNAA+G LR+L+P    +              
Sbjct: 172 GECYMGKEAFLKLNTERDENGEAVFANPRNAAAGSLRQLDPQVTKKRNLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ +Q+M  LGF  N   ++     G+ +Y +E  S R +L Y IDG+V KVD+
Sbjct: 232 KEITSQHQAIQQMAKLGFHTNETGKRLANLDGVFAYIDEYTSKRDSLSYGIDGIVLKVDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQKQLG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PV + G  +
Sbjct: 292 LTLQKQLGNTVKVPRWEIAYKFPPEEQETIVHEIVWTVGRTGVVTPTAVMDPVELAGTTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A LHN D +K            +D+R+GD V + +AG++IP++ ++++++R  D++ +
Sbjct: 352 SRAVLHNPDLLK-----------QKDVRIGDTVRLHKAGDIIPEISEVVLSKRPVDSKVY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C   +V            A RC    AC AQ  E + HF SR A +I GLG 
Sbjct: 401 EIPDKCPSCGQALVHLEGE------VALRCINP-ACPAQIEEGIIHFASRPAMDIMGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +    +       ++  AD++ L             +  FGD S+ NL  +I+  R  
Sbjct: 454 KIVRQLIQHN----LVKDIADLYHLTADDL------AELDHFGDKSINNLLTAIDNSRQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  +  LGI HVGA+ A  + + + +     Q               L  +  +G+ I
Sbjct: 504 SVELLLNGLGIDHVGAKAALLIVQRFKNLNKIMQA----------SVSELTAIDTIGETI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSP-----SIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           A++I  ++        V+ L+              +E+   +  +NK +V TG L    R
Sbjct: 554 AESITTYFAQASVQKLVQELIDSGVNIDYLGEDVSNEEIADNFFKNKTVVLTGKLAHFTR 613

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  + +  LGA V+  +S+KTD +I G + GSKL KA+ L + ++ EE+ +  +Q
Sbjct: 614 SEFTKKLESLGAKVTGSVSKKTDYVIYGTDAGSKLTKAESLQIALLTEEEAIEKIQ 669


>gi|242371787|ref|ZP_04817361.1| DNA ligase [Staphylococcus epidermidis M23864:W1]
 gi|242350488|gb|EES42089.1| DNA ligase [Staphylococcus epidermidis M23864:W1]
          Length = 667

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/714 (33%), Positives = 376/714 (52%), Gaps = 53/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  ++ ++ L   ++ +   YY    P + DSEYD L      I    P+   +   + 
Sbjct: 1   MEDLQRRVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIETEHPEYKTA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRENIG-----NVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y+ GKFV    RGDG +GED++  +R I  IP  +   +    EVRGE Y+
Sbjct: 113 IDGLAVSLKYQDGKFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--FEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN +    G +P+ANPRNAA+G LR+L+      R L+ F++ +   ++  A 
Sbjct: 171 PRRSFMNLNKQKEENGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFTDFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   L ++  LGF  N    + +   G++ Y  +    R +L YDIDG+V KV++   Q
Sbjct: 231 TQSGALNELDQLGFKTNQERERVSDIEGVLKYIEKWTDKRESLSYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I++ R  DA+ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVKSILDRRPDDAETYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLIEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +++E     I+  ADIF LQ            +   G   V NL  +I K ++ S E 
Sbjct: 453 QLYENE----LIKDVADIFYLQEEDL------LPLERMGTKKVENLLAAIEKAKDNSFEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +     +               L+ +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETMDRLLEVTEA----------ELVEIHDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      ++ L  +      +  K        E   K +V TG L+++ R +A +
Sbjct: 553 VTYLENEDIRALIQKLKDKNVNMSYKGIKTTEIEGHPEFSGKTIVLTGKLEQMTRSEASQ 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++   GA V+  +++ TDI+I G + GSKL KA++ G +I  EE+F    ++ N
Sbjct: 613 WLEMQGAKVTNSVTKSTDIVIAGADAGSKLTKAEKFGTEIWTEEEFANKQKELN 666


>gi|319779225|ref|YP_004130138.1| DNA ligase [Taylorella equigenitalis MCE9]
 gi|317109249|gb|ADU91995.1| DNA ligase [Taylorella equigenitalis MCE9]
          Length = 681

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 259/711 (36%), Positives = 386/711 (54%), Gaps = 48/711 (6%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
             +L+  IS HD  YY    P I D EYD L R+      A P+   S   + P  ++GG
Sbjct: 9   YEALKSLISVHDKAYYIDDNPQISDEEYDGLMRKLLDYEQAHPEWVTS---DSPSQRVGG 65

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
                   V H++P LSL  ++N E+L  F  R+       D     F  EPK DG  I+
Sbjct: 66  VALKIFNSVRHAVPMLSLGNVFNPEELTAFYNRMVEAVGSDD---FEFNCEPKFDGLAIS 122

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP----RVLSLNIPEIIEVRGEVYISKN 196
           IRYE G    A+ RGDG +GEDV+A +  I T+P          +P+IIEVRGE  + ++
Sbjct: 123 IRYENGVLKTASTRGDGLTGEDVTAQVSTIRTVPLKLNVPSKEALPKIIEVRGEALMLRS 182

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE---IFAK 252
           DF  L       G + +ANPRNAA+G LR+L+P     R L F+ +GLG+         K
Sbjct: 183 DFDNLVKRQEEEGLQTFANPRNAAAGSLRQLDPKITAKRKLRFYAYGLGEFKSLGSEEPK 242

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q ++L  +  LGF V           G+++++  +K+ R TLP+DIDG+VYKVD F LQ
Sbjct: 243 SQSQLLDYLSELGFAVTEYRSVKKGLDGLLNFFEHIKAKRDTLPFDIDGVVYKVDSFELQ 302

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G  +++PR+ I+HKFA +Q  T+LLDI++Q+GRTG LTPVARLEPV +GG  +  AT
Sbjct: 303 QKIGFVSKAPRFAIAHKFAAEQMQTKLLDIEVQVGRTGALTPVARLEPVFVGGVTVRKAT 362

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I+            +++ +GD V+V+RAG+VIP+V++ +++ R  DA  F  P+
Sbjct: 363 LHNEDEIER-----------KNLMIGDTVIVRRAGDVIPEVLESVIDLRPEDAVKFVMPT 411

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S V +          A  RCTGGL C AQ  + + H VSR A NIEGLG + + 
Sbjct: 412 ICPVCGSAVEKPEGE------AVARCTGGLVCGAQITQGIIHAVSRKALNIEGLGDKHIQ 465

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
               +E     I+   D+F L         +        +V    L+  I   ++ +L R
Sbjct: 466 KLVSTEK----IKRLDDLFKLTVDDLNILGRNAE-DSKLEVLAPTLHARIQASKSTTLSR 520

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+F+LGIRHVG   AR LAKY+    +  Q               L+ VP VG+++A +I
Sbjct: 521 FLFALGIRHVGETTARDLAKYFGDLYSIMQA----------STEELVSVPNVGEVMATSI 570

Query: 613 VEFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             F+  P N   +  LL+     +       ++  I     V TGTL+  +R +  + + 
Sbjct: 571 HTFFNEPHNREVISNLLELGFVLNAEEEAIQINPAIAGHSFVVTGTLENWKRDEISQVII 630

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQY 721
             G  +++ +S+KTD +++G  PG SK++KAQ++G KI++E +F+ +L+Q 
Sbjct: 631 SSGGRINSSVSKKTDYLLMGAEPGDSKVKKAQEVGTKILSEAEFIQMLEQK 681


>gi|297191909|ref|ZP_06909307.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721112|gb|EDY65020.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 736

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 220/736 (29%), Positives = 348/736 (47%), Gaps = 61/736 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             QAR+E + L ++I  H   YY    P+I D+E+D L R  + +   +P+L     P+ 
Sbjct: 19  PAQAREEHALLAEQIEEHRFRYYVKDSPVISDAEFDKLLRELEGLEERYPEL---RTPDS 75

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G+    L KV H    LSL+  ++  +L  +  R+ R       +   F  E K
Sbjct: 76  PTQKVAGDYETELTKVEHRERMLSLDNAFDDAELAAWAERVARDVGAPGYH---FLCELK 132

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           +DG  + + YEKG+   AA RGDG  GED++   R I  IP  L  +     +E+RGEVY
Sbjct: 133 VDGLAVNLTYEKGRLTRAATRGDGRVGEDITPNARTIAGIPDRLGGDRIPRLVEIRGEVY 192

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                F  LN   +A G +PYANPRN+ASG LR+ +P    T  L   VHG+G    +  
Sbjct: 193 FPMEQFQELNARRVAAGEQPYANPRNSASGSLRQKDPKVTATLPLRMVVHGIGAREGLTI 252

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               +    +R  G P     +   +   +  +       R ++ ++IDG+V K+DE  L
Sbjct: 253 DRLSQAYDLLREWGLPTARHNKVVGSLEEVREFIAYFGEHRHSVEHEIDGVVVKLDEIPL 312

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  AR+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ +  A
Sbjct: 313 QGRLGSTARAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVAGSEVEFA 372

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D +K            + + +GD V++++AG+VIP+++  +V+ R    + F  P
Sbjct: 373 TLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMP 421

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK--- 488
           + CP C + +         +     RC    +C AQ  ERL +   R A +IE  G    
Sbjct: 422 AECPECGTALRPM-----KEGDVDLRCPNARSCPAQLRERLFYLAGRKALDIEHFGYVAA 476

Query: 489 ---------------QQLDFFFKSEDPAFSIRIP--ADIFTLQRRQQTSTTK-----IEN 526
                           + D F  + +    I+         L +R   +          N
Sbjct: 477 AALTQPLEPAEPPLVDEGDLFDLTMEQLLPIKAYVLDQDSGLPKRDPKTGEDKIATVFAN 536

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             G    +   + ++I   +   L R I  L IRHVG   A +LA+ + S     Q    
Sbjct: 537 QKGEPRRNAVAMLENIAAAKERPLARIITGLSIRHVGPVAAEALAREFRSIDRIEQATE- 595

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG--RHEKNVS 644
                      L  V  VG  IA A+ ++++   +   +         +      E    
Sbjct: 596 ---------EELAAVDGVGPTIAAALKQWFEEDWHREILRKWRAAGVRTEEHGSGEDAGP 646

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TGTL+   R  A+E +  LGA V+  +S+KT  ++VGDNPGSK +KA QL
Sbjct: 647 RPLEGLTVVVTGTLENHTRDGAKEALQSLGAKVAGSVSKKTSFVVVGDNPGSKYDKAVQL 706

Query: 705 GVKIMNEEQFLFLLQQ 720
            V +++E  F  LL++
Sbjct: 707 KVPVLDESGFAVLLEE 722


>gi|227523032|ref|ZP_03953081.1| NAD-dependent DNA ligase [Lactobacillus hilgardii ATCC 8290]
 gi|227089850|gb|EEI25162.1| NAD-dependent DNA ligase [Lactobacillus hilgardii ATCC 8290]
          Length = 675

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 238/719 (33%), Positives = 371/719 (51%), Gaps = 53/719 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ +QA      L ++++   D YY Y  P + DS YD   ++   +   FP +    
Sbjct: 4   EDMTEQQAESAARELREKLNKWADEYYTYDSPSVEDSVYDQTYQQLVDLETTFPQIV--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  K+G        KV H IP LSL  +++IE+L+ F  R        +     + 
Sbjct: 61  TPDSPTQKVGDHTLPGFTKVPHEIPMLSLGDVFSIEELKAFADR----LSDSESVPFEYN 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G  V  A RG+G  GED++  ++ I +IP    L+ P  IEVRG
Sbjct: 117 CELKIDGLAISLRYEDGILVQGATRGNGQIGEDITRNLKTIKSIP--QRLSRPINIEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           E Y+ K  F+ LN +    G  P+ANPRNAA+G LR+L+      R L+ F++ +    +
Sbjct: 175 ECYMPKESFVELNQQRQVEGVAPFANPRNAAAGSLRQLDSRVTAHRKLSTFMYNVANYDD 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +  Q  ML++++ LGF +N+  + A+    I  Y       R TL Y IDG+V KV+ 
Sbjct: 235 LESDTQSGMLEELKKLGFTINSDYQVAHNMDDIDQYVERYTKQRDTLAYGIDGIVIKVNS 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ+ LG   + PRW I++KF  ++A T + DI+  +GRTG++TP A ++ V + G  +
Sbjct: 295 LPLQRSLGATVKVPRWAIAYKFPPEEAETTVRDIEWTVGRTGVVTPTAVMDEVTLAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN DY++            +DIR+GD V + +AG++IP++   + ++R  D+QP+
Sbjct: 355 SRASLHNPDYLQ-----------EKDIRIGDTVRLHKAGDIIPEISTYVKDKRQVDSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C S +V            A RC     C AQ  E L HF SRDA NI+GLG 
Sbjct: 404 EIPTECPSCGSELVHLDEE------VALRCINPQ-CPAQLKEGLTHFASRDAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +   FK       +   A ++ L   Q  +      +  FG+ S  NL  +I+  RN 
Sbjct: 457 KIIGQLFKK----HMLTDVAGLYGLTFDQLMT------LDKFGEKSAGNLLAAIDNSRNN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S ER +F LGIRHVGA+ AR +A+ + +                     +  +  +G II
Sbjct: 507 SCERLLFGLGIRHVGAKAARLIAQRFKNIDKVMDAT----------AQEIAEIDTMGMII 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI-----GRHEKNVSSEIENKKLVFTGTLQKIQR 663
           A ++V ++  P++   +  L +               K   S    K+LV TG LQ I R
Sbjct: 557 ADSVVTYFSMPQSKELISQLKQVGVNMDYLGATDEALKESDSVFNGKRLVLTGKLQHITR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +A  ++   GA VS  +S+KTDI++VG++PGSK +KA+ LG+ + +E +F   +    
Sbjct: 617 PEATRWLENHGAKVSGSVSKKTDIVVVGEDPGSKYDKARNLGIDVWDENRFAEAMADEK 675


>gi|87301433|ref|ZP_01084273.1| DNA ligase [Synechococcus sp. WH 5701]
 gi|87283650|gb|EAQ75604.1| DNA ligase [Synechococcus sp. WH 5701]
          Length = 698

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 222/734 (30%), Positives = 349/734 (47%), Gaps = 65/734 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R     L + ++     YY    P + D+ YD L R  + +    P+L     P+ P  +
Sbjct: 2   RALAEELRRLLNRAAHAYYVLDSPEMEDAVYDRLYRELEQLERLHPELI---SPDSPTRR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-----SIFFTLEP 132
           +GG        V H I  LSLE  ++IE+L  +  R+ +   +         ++    E 
Sbjct: 59  VGGSPAEGFQAVRHRIGLLSLENAFSIEELEAWYGRLLKVLDRSAPPGEALPALPMVGEL 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEV 191
           KIDG  + + YE G  V AA RGDG SGE+++A +R I ++P  L   + PE +EVRGE 
Sbjct: 119 KIDGNALALSYEHGLLVRAATRGDGESGEEITANVRTIQSVPLRLLLEDPPEWVEVRGEA 178

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL------- 243
            I    F  +N E    G   +ANPRNA +G LR+L+P     R L+FF + L       
Sbjct: 179 LIPDGTFAEINAERAGRGEPLFANPRNACAGTLRQLDPQVVAARRLDFFAYTLHLPDDWR 238

Query: 244 ---GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
              G       + Q+E L+ +   GF VN           + +++   +  R  LPY  D
Sbjct: 239 PAPGSGDPGRPRSQWESLRWLAAAGFRVNPNAALCPDLAAVEAFFAAWEHKRRDLPYATD 298

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K+D+  LQ   G   ++PRW I+ K+A ++A +RLL +  Q+GRTG++TPVA  EP
Sbjct: 299 GVVVKLDDLRLQADAGFTQKAPRWAIALKYAAEEAPSRLLRLVAQVGRTGVVTPVAEFEP 358

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G  ++ ATLHN D +  L           D+  GD ++V++AGE+IP+VV ++   
Sbjct: 359 VPLAGTSVSRATLHNADRLAEL-----------DLHAGDTIVVRKAGEIIPEVVRVLAEL 407

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R P A P   PS CP C S +VR+         AA RC    +C A     L+H+VS+ A
Sbjct: 408 RPPGAAPLQLPSSCPECGSALVREEGE------AATRCVNS-SCPAILRGALRHWVSKGA 460

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +++GLG + ++           +R  AD++ L      S      +   G+ S  NL +
Sbjct: 461 MDVDGLGAKLVEQLVDR----GLVRSIADLYRLDAALLAS------LERMGETSAANLVE 510

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           ++   +     R ++ LGI HVGA  A++LA+ + S +              +    +  
Sbjct: 511 ALEASKQQPWHRQLYGLGIHHVGAVNAKALARAFPSAETLGMA-------AAEQPEVITA 563

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----------IENK 650
           V  +G  IA+++ +++    N   +  L     P      +               +  +
Sbjct: 564 VFGIGGEIAESLRQWFATAANGALLAELQALGIPLAAAEREQGVEGEGGGPGGAGHLSGQ 623

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             V TGTL  + R +AQ  +   G  VS  +S+KT  ++ G   GSKL KA+ LGV +++
Sbjct: 624 TFVLTGTLPSLSRSQAQALIEAAGGKVSGSVSKKTSYVVAGAEAGSKLTKAEALGVAVLD 683

Query: 711 EEQFLFLLQQYNTT 724
           EE    LL++   T
Sbjct: 684 EEGLRALLEELEGT 697


>gi|227512904|ref|ZP_03942953.1| NAD-dependent DNA ligase [Lactobacillus buchneri ATCC 11577]
 gi|227083904|gb|EEI19216.1| NAD-dependent DNA ligase [Lactobacillus buchneri ATCC 11577]
          Length = 675

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 238/719 (33%), Positives = 371/719 (51%), Gaps = 53/719 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ +QA      L ++++   D YY Y  P + DS YD   ++   +   FP +    
Sbjct: 4   EDMTEQQAESAARELREKLNKWADEYYTYDSPSVEDSVYDQTYQQLVDLETTFPQIV--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  K+G        KV H IP LSL  +++IE+L+ F  R        +     + 
Sbjct: 61  TPDSPTQKVGDHTLPGFTKVPHEIPMLSLGDVFSIEELKAFADR----LSDSESVPFEYN 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G  V  A RG+G  GED++  ++ I +IP    L+ P  IEVRG
Sbjct: 117 CELKIDGLAISLRYEDGILVQGATRGNGQIGEDITRNLKTIKSIP--QRLSRPINIEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           E Y+ K  F+ LN +    G  P+ANPRNAA+G LR+L+      R L+ F++ +    +
Sbjct: 175 ECYMPKESFVELNQQRQVEGVAPFANPRNAAAGSLRQLDSRVTAHRKLSTFMYNVANYDD 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +  Q  ML++++ LGF +N+  + A+    I  Y       R TL Y IDG+V KV+ 
Sbjct: 235 LESDTQSGMLEELKKLGFTINSDYQVAHNMDDIDQYVERYTKQRDTLAYGIDGIVIKVNS 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ+ LG   + PRW I++KF  ++A T + DI+  +GRTG++TP A ++ V + G  +
Sbjct: 295 LPLQRSLGATVKVPRWAIAYKFPPEEAETTVRDIEWTVGRTGVVTPTAVMDEVTLAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN DY++            +DIR+GD V + +AG++IP++   + ++R  D+QP+
Sbjct: 355 SRASLHNPDYLQ-----------EKDIRIGDTVRLHKAGDIIPEISTYVKDKRQVDSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C S +V            A RC     C AQ  E L HF SRDA NI+GLG 
Sbjct: 404 EIPTECPSCGSELVHLDEE------VALRCINPQ-CPAQLKEGLTHFASRDAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +   FK       +   A ++ L   Q  +      +  FG+ S  NL  +I+  RN 
Sbjct: 457 KIIGQLFKK----HMLTDVAGLYGLTFDQLMT------LDKFGEKSAGNLLTAIDNSRNN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S ER +F LGIRHVGA+ AR +A+ + +                     +  +  +G II
Sbjct: 507 SCERLLFGLGIRHVGAKAARLIAQRFKNIDKVMDAT----------AQEIAEIDTMGMII 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI-----GRHEKNVSSEIENKKLVFTGTLQKIQR 663
           A ++V ++  P++   +  L +               K   S    K+LV TG LQ I R
Sbjct: 557 ADSVVTYFSMPQSKELISQLKQVGVNMDYLGATDEALKESDSVFNGKRLVLTGKLQHITR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +A  ++   GA VS  +S+KTDI++VG++PGSK +KA+ LG+ + +E +F   +    
Sbjct: 617 PEATRWLENHGAKVSGSVSKKTDIVVVGEDPGSKYDKARNLGIDVWDENRFAEAMADEK 675


>gi|116513594|ref|YP_812500.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|122275636|sp|Q04BW0|DNLJ_LACDB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116092909|gb|ABJ58062.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 671

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 207/714 (28%), Positives = 358/714 (50%), Gaps = 49/714 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S+E+A++E+  L  ++      YY+   P++ D  YD    R   +  A+ +L      +
Sbjct: 4   SLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYSELK---SAD 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
               ++GGE+N  L KV H +P LS+  +++ E+L +F  R+ +       + + + +E 
Sbjct: 61  SITQRVGGEVNSDLPKVEHPVPMLSMGDVFSKEELAEFDQRVQKAIG----HPVAYNVEL 116

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  +++ YE+G+   A+ RG+G  GEDV+  ++ I  +P+ L   I    EVRGE Y
Sbjct: 117 KIDGLSLSLEYEEGRLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGECY 174

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +SK  F  LN E    G   +ANPRNAA+G LR+L+P    +                  
Sbjct: 175 MSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAGID 234

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q++ + +M  LGF  N   R+      +  Y +E    R +LPY IDG+V KVD+ +LQ
Sbjct: 235 SQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDDLALQ 294

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G+ +  A+
Sbjct: 295 ADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGSTVARAS 354

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D +  L           D+R+GD V + +AG++IP++ ++++++R  D+ P+  P+
Sbjct: 355 LHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPYEVPT 403

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +V            A RC    +C AQ  E + HF SR A NI GLG + + 
Sbjct: 404 KCPSCGEDLVHLDEE------VALRCINP-SCPAQVEEGITHFASRQAMNIAGLGPKIVK 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                +     +   AD++ L     +       +  F + S+ NL  +I++ R  S+E 
Sbjct: 457 QLIAKD----LVHNVADLYYLTADDLS------QLDHFKEKSINNLLVAIDQSRKNSVEL 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGI +VG + A+ +A+ + +    A                L  +  +G  IA+++
Sbjct: 507 VLFGLGIDNVGGKAAQLIARKFKNMSKIASA----------SVQELTAIDTIGMTIAESL 556

Query: 613 VEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
             ++Q       +  L +        G   +   +  + K +V TG L    R +  + +
Sbjct: 557 TTYFQQEEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAEFTKKL 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             LGA V+  +S+KTD ++ G++ GSKL KA+ L +  + E + +  +++ +T 
Sbjct: 617 QALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDTE 670


>gi|1352293|sp|P49422|DNLJ_THESC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|609276|emb|CAA82645.1| DNA ligase [Thermus scotoductus]
 gi|1093606|prf||2104272A DNA ligase
          Length = 674

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 240/712 (33%), Positives = 382/712 (53%), Gaps = 52/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E+ARK ++ L   I YH+  YY  + P I D+EYD L R    +   FP+L     P
Sbjct: 1   MTLEEARKRVNELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPELK---SP 57

Query: 72  NGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G +   +    + H     SL+  +N ++L+ F  RI R   ++      +T+
Sbjct: 58  DSPTEQVGAKPLEATFRPIRHPTRMYSLDNAFNFDELKAFEERIGRALGRE--GPFAYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE G  V+ A RGDG  GE+V+  +  IPTIPR +    PE +EVRGE
Sbjct: 116 EHKVDGLSVNLYYEDGVLVWGATRGDGEVGEEVTQNLLTIPTIPRRVKGV-PERLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+    FL LN+E+   G K + NPRNAA+G LR+ +P     R L    + LG   E 
Sbjct: 175 VYMPIEAFLRLNEELEEKGEKIFKNPRNAAAGSLRQKDPRITARRGLRATFYALGLGLEE 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K Q ++L  +R  GFPV +G  +A    G+   Y      R +LP++ DG+V K+DE
Sbjct: 235 SGLKTQLDLLHWLREKGFPVEHGFARAEGAEGVERIYQGWLKERRSLPFEADGVVVKLDE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SL ++LG  AR+PR+ I++KF  ++  TRLL +  Q+GRTG +TPV  LEPV I G+++
Sbjct: 295 LSLWRELGYTARAPRFAIAYKFPAEEKETRLLQVVFQVGRTGRVTPVGILEPVFIEGSVV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  TLHNE YI+ L           D+R+GD VLV +AG VIP+V+ ++  +R  + +P 
Sbjct: 355 SRVTLHNESYIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKEKRTGEERPI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P  CP C  R+V++           HRC   L C A++ E ++H+ SR A +I GLG+
Sbjct: 404 RWPETCPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIGGLGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   +       ++  AD++ L++           +   G+ S  NL   I + +  
Sbjct: 455 KLIEKLLEK----GLVKDVADLYRLKKEDLLG------LERMGEKSAQNLLRQIEESKGR 504

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            LER +++LG+  VG  +AR+LA ++ +     +     +           +V  VG++ 
Sbjct: 505 GLERLLYALGLPGVGEVLARNLAAHFGTMDRLLEASLEELL----------QVEEVGELT 554

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+ I E  Q+P     V  L +       +  +     ++    V TG L +  R + + 
Sbjct: 555 ARGIYETLQDPAFRDLVRRLKEAGVVMEAK--ERGEEALKGLTFVITGELSR-PREEVKA 611

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV  + EE+   L+++
Sbjct: 612 LLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLIEE 663


>gi|210630510|ref|ZP_03296493.1| hypothetical protein COLSTE_00378 [Collinsella stercoris DSM 13279]
 gi|210160444|gb|EEA91415.1| hypothetical protein COLSTE_00378 [Collinsella stercoris DSM 13279]
          Length = 756

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 229/735 (31%), Positives = 346/735 (47%), Gaps = 76/735 (10%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
            L   + YH   YY    P I D+ +D L      I  A P+L     P+    ++GG +
Sbjct: 53  ELRHLLDYHAYRYYALDAPEISDAAFDKLLIELQQIEAAHPELV---TPDSYTQRVGGYV 109

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
           +     VTH     S++   N+E+L +++ R            + +T E KIDG  + I 
Sbjct: 110 SEQFTPVTHMARMYSMDDAMNLEELDEWLARTEDALGA---GRVAYTCELKIDGLGVAIT 166

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII--------EVRGEVYIS 194
           Y+ G FV AA RGDG +GEDVS  +R I  +P  LS      +        EVRGEVY+ 
Sbjct: 167 YQNGAFVRAATRGDGTTGEDVSLNVRTIKDVPMHLSEAALAHMGADRSAPIEVRGEVYMP 226

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F  LN E  A GR+P+ANPRNAA+G LR+ +P    +R+L  F++ +  T+ +    
Sbjct: 227 KGSFARLNAEADAEGREPFANPRNAAAGSLRQKDPKVTASRHLATFIYAIADTAPLHVDS 286

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q+  L  +R  GF VN  V +  +   + ++  +  + R  L YDIDG+V KVD F  Q 
Sbjct: 287 QHAFLDWLRRAGFSVNGSVARCTSPAEVHAFCADALAHRGDLDYDIDGVVVKVDSFDQQG 346

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  AR+PRW I+ KF  ++ +T L DI IQ+GRTG+LTPVA  +PV + G+ I  ATL
Sbjct: 347 DLGFTARAPRWAIAFKFPPEEKTTVLRDIRIQVGRTGVLTPVAEFDPVTVAGSTIARATL 406

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+            +D+R GD ++V +AG+VIP+VV  ++++R      +  P+ 
Sbjct: 407 HNLDEIRR-----------KDVRPGDTIIVHKAGDVIPEVVGPVLDKRPEGTAEWDMPAT 455

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S VV +      +          L C AQ  ERL H+VSR   +++G+G    D 
Sbjct: 456 CPACGSPVVHEDGEVAYR-------CVSLDCPAQLKERLLHWVSRGCMDVDGVG----DE 504

Query: 494 FFKSEDPAFSIRIPADIFTLQ--------------RRQQTSTTKIENILGFGDVSVTNLY 539
                  A  +   AD + L               +  +       + +  G      + 
Sbjct: 505 LIDKMIEAGLLHDVADFYHLTVDAVAALDTGRTYLKDDKKKGVSAGDSIKVGATIAQKVV 564

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           D + + R   L R +F+LGIRHVG  +A  +A+ +L+    A                + 
Sbjct: 565 DELTRSREQPLSRVLFALGIRHVGKSVAEVIAQRFLTVDALAAASE----------EDIA 614

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---------------RHEKNVS 644
               +G  IA ++ +F   P N+  ++ L +                        +   +
Sbjct: 615 GCEGIGPKIAASVRQFLAVPENLEVLQRLREAGLSLEEDLGAAHAQAAQETGVAADLAEA 674

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +     V TGTL    R +A   +  LGA VS  +S+KT  ++ G   GSKL KA+ L
Sbjct: 675 QPLAGLTFVLTGTLVNRTRDEAGAALKLLGAKVSGSVSKKTSYLVAGPKAGSKLTKAESL 734

Query: 705 GVKIMNEEQFLFLLQ 719
           GV +++E     +L 
Sbjct: 735 GVPVLDEAALEQILA 749


>gi|302522063|ref|ZP_07274405.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB78]
 gi|302430958|gb|EFL02774.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB78]
          Length = 783

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 211/738 (28%), Positives = 349/738 (47%), Gaps = 63/738 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
               R+E   + +E+  H   YY   +P++ D+++D L RR  A+    P L     P+ 
Sbjct: 33  PADVREEHDGIAREVDEHRYRYYVNDQPVVSDAQFDELLRRLTALEEEHPQL---RTPDS 89

Query: 74  PLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           P  K+ G+         V H    LSL+ +++ E L  +  R+ +       +   +  E
Sbjct: 90  PTQKVAGDYQQFTPFASVEHRERMLSLDNVFDDEGLAAWAERLAKEIGAPGYH---YLCE 146

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190
            K+DG  + + YE G+   AA RGDG  GED++  +R I  IP  L+ +  PE++EVRGE
Sbjct: 147 LKVDGLAVNLTYENGRLTRAATRGDGRVGEDITPNVRTISDIPEQLAGDRVPELVEVRGE 206

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY    DF ALN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G     
Sbjct: 207 VYFPMEDFEALNARLVDAGEKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREGF 266

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                    + +   G P     +  ++  G+ S+       R ++ ++IDG+V K+DE 
Sbjct: 267 TIDRLSHAYELLHEWGLPTARHNKVVDSLDGVRSFIRYYGEHRHSVEHEIDGVVVKLDEI 326

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ +LG  +R+PRW  + KF  ++ +T+L+DI + +GRTG +TP A +EP+ + G+ + 
Sbjct: 327 PLQGRLGSTSRAPRWATAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPIVVAGSEVE 386

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+D +K            + + +GD V++++AG+VIP+++  +V+ R      F 
Sbjct: 387 FATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEHAFV 435

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +         +     RC    +C AQ  ER+ +   R + +IE LG  
Sbjct: 436 MPAECPECGTPLRAM-----KEGDIDLRCPNARSCPAQLRERIFYLAGRKSLDIEHLGYV 490

Query: 490 QLDFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI------------------------ 524
                 +  +P+   +R   D+F L   +                               
Sbjct: 491 AATALTQPIEPSDPPVRDEGDLFDLTAEELLPIRSYVLDQDSGLPKRDPASGEEKIVTFF 550

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
            N  G    +  ++ ++I   +   L + +  L IRHVG   A +LA+ + S        
Sbjct: 551 ANKEGVAKKNTLSMLENIEAAKQRPLAQILTGLSIRHVGPVAAAALAREFRSIDRIFAAE 610

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
            +           L     VG  IA ++ ++Y+   +   +               +  S
Sbjct: 611 ES----------ELAETEGVGPTIAASLKQWYEEDWHREILRRWKAAGVRMEAAESETDS 660

Query: 645 SE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
               +E   +V TGTL++  R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA 
Sbjct: 661 GPRPLEGLTVVVTGTLERWTRDAAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAL 720

Query: 703 QLGVKIMNEEQFLFLLQQ 720
            L V ++ E+ F  LLQ+
Sbjct: 721 SLKVPVLEEDGFAILLQE 738


>gi|139438245|ref|ZP_01771798.1| Hypothetical protein COLAER_00787 [Collinsella aerofaciens ATCC
           25986]
 gi|133776442|gb|EBA40262.1| Hypothetical protein COLAER_00787 [Collinsella aerofaciens ATCC
           25986]
          Length = 742

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 234/735 (31%), Positives = 351/735 (47%), Gaps = 76/735 (10%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
            L  E+ YH   YY    P I D+ +D +      I  A+PDL     P+    ++GG +
Sbjct: 39  ELRHELDYHAYRYYMLDAPEITDAAFDKMLVELQEIEAAYPDLV---TPDSYTQRVGGYV 95

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
           +     VTH     S++   ++++L  ++ R           ++ +T E KIDG  + + 
Sbjct: 96  SEQFTPVTHMARMYSMDDAMDLDELDAWLQRTEDALGA---GNVTYTCELKIDGLGVALT 152

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--------IPEIIEVRGEVYIS 194
           Y+ G FV AA RGDG +GEDVS  +R I  +P  LS              IEVRGEVY+ 
Sbjct: 153 YQNGTFVRAATRGDGTTGEDVSLNVRTIKDVPMHLSEPALTHMGADRERTIEVRGEVYMP 212

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           K  F+ LN+E  A GR P+ANPRNAA+G LR+ +P     R L  F++ +  T  +    
Sbjct: 213 KGSFVRLNEEADAEGRDPFANPRNAAAGSLRQKDPKVTARRDLATFIYAIADTDPLHVHS 272

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q E L  +R  GF VN  V +  T   +  +  +    R  L YDIDG+V KVD F  Q 
Sbjct: 273 QREFLDWLRSAGFSVNPNVARCATPAEVHEFCAQALEHRGDLDYDIDGVVVKVDSFQQQL 332

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  AR+PRW I+ KF  ++  T L +I IQ+GRTG+LTPVA  +PV + G+ I  ATL
Sbjct: 333 DLGFTARAPRWAIAFKFPPEEKQTVLREIRIQVGRTGVLTPVAEFDPVTVAGSTIARATL 392

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I+            +++R GD ++V +AG+VIP+VV  ++++R  D+  +  P  
Sbjct: 393 HNIDEIRR-----------KNVREGDTIIVHKAGDVIPEVVGPVLDKRPADSVDWQMPEV 441

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C S VV +      +          + C AQ  ERL H+VSR   +++GLG + +D 
Sbjct: 442 CPVCGSPVVHEDGEVAYR-------CVSIDCPAQLKERLLHWVSRGCMDVDGLGDEIVDK 494

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQ----------TSTTKIENILGFGD----VSVTNLY 539
                  A  I   AD + L               +S +K     G        +   + 
Sbjct: 495 MI----AAGLIHDVADFYQLTVDDIAGLDTGRTYASSNSKKGVKKGDPIPVGLKTAEKII 550

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
             +NK ++  L R +F+LGIRHVG  +   +A+ +LS                     + 
Sbjct: 551 VELNKSKSQPLGRVLFALGIRHVGKSVGEVIAERFLSIDKLILASE----------EDIA 600

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---------------SPSIGRHEKNVS 644
               +G  IA ++ +F   P N+  +E L +                 + +    E   +
Sbjct: 601 ECEGIGPKIAASVKQFLAVPENLAVLERLRQAGLSLEVDLGAAHAQAAADAGVAGELADA 660

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +     V TGTL    R +A   +  LGA VS  +S+KT  ++ G   GSKL KA+QL
Sbjct: 661 QPLAGLTFVLTGTLVNRTRDEAGAALKVLGAKVSGSVSKKTSYLVAGPKAGSKLTKAEQL 720

Query: 705 GVKIMNEEQFLFLLQ 719
           GV +++E+    +L 
Sbjct: 721 GVPVLDEDALEQILA 735


>gi|56696562|ref|YP_166919.1| DNA ligase, NAD-dependent [Ruegeria pomeroyi DSS-3]
 gi|81349987|sp|Q5LST6|DNLJ_SILPO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56678299|gb|AAV94965.1| DNA ligase, NAD-dependent [Ruegeria pomeroyi DSS-3]
          Length = 739

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 287/752 (38%), Positives = 429/752 (57%), Gaps = 59/752 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++  +A +EL+ L   ++  +  Y+    P I D++YDALK+R   I   FP L R   P
Sbjct: 1   MTEAEAAQELARLAGLLAQANLAYHTLDAPEISDADYDALKQRNAEIEARFPHLKR---P 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G        KV+H++  +SL   ++  D+  F   I ++     + ++ +T E
Sbjct: 58  DSPSEQVGARPGEGFSKVSHAVRMMSLGNAFDDADVADFDRSIRKYLGLDVETALAYTAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++RYE+G  V AA RGDG  GE+V+A  R I  IP  +    PE++EVRGEV
Sbjct: 118 PKIDGLSLSLRYEQGVLVQAATRGDGEVGENVTANARTIADIPARIEGA-PEVLEVRGEV 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+S  DF ALN    A G K +ANPRNAA+G LR+L+      R L FF +  G+ SE  
Sbjct: 177 YMSHADFAALNTRQEAEGGKLFANPRNAAAGSLRQLDAAITRARPLRFFAYSWGELSEPL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A+ Q + ++++  LGF  N   R+      ++++Y ++++ R+TL YDIDG+VYK+D+  
Sbjct: 237 AETQMQAIERLAGLGFQTNPLTRRCADLDAMIAHYRDIEAQRATLGYDIDGVVYKLDDLG 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG +++N
Sbjct: 297 LQARLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGVVVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYI G D+ G+ +R G+DIRVGD V V RAG+VIPK+ D+ +N+R   A PF F
Sbjct: 357 ATLHNEDYIAGRDSRGQEIRDGKDIRVGDWVQVYRAGDVIPKIADVDLNKRPEGANPFEF 416

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S  +R+         A  RCTGG+ C AQ +E+LKHFVSR AF+IEGLG +Q
Sbjct: 417 PEQCPECGSPAIREEG------DAVRRCTGGVICPAQAVEKLKHFVSRAAFDIEGLGAKQ 470

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F         IR PADIF L+ R      +++N  G+G+ S TNL+ +I+ +R I L
Sbjct: 471 VEQFHAD----GWIREPADIFELRSRYGEGLQQLKNREGWGEKSATNLFQAIDDKRRIPL 526

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN------------------------- 585
            R IF+LGIRHVG   A+ L+ +Y  +   A  ++                         
Sbjct: 527 ARLIFALGIRHVGEVGAKDLSLHYRDWDAMAAALDTARLAALAHRAADTAEEQERQQAQA 586

Query: 586 ------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
                              +       W  LI V  +G  +  ++ + + N     A + 
Sbjct: 587 EGRRARISDTRAAVIAAQEVPPEAAAAWADLIGVDGIGATLGLSLSDAFANGDERAAFDR 646

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           L   ++  I        S +  K +VFTG+L+K+ R +A+     LGA V+  +S+KTD+
Sbjct: 647 LSAHLTV-IPPDAPARDSPVAGKTVVFTGSLEKMTRAEAKARAEALGAKVAGSVSKKTDL 705

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ G   GSKL+ A+ LG++ ++E+ +L L++
Sbjct: 706 LVAGPGAGSKLKTAESLGIETLDEDGWLKLIE 737


>gi|260887264|ref|ZP_05898527.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
 gi|330838979|ref|YP_004413559.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
 gi|260863326|gb|EEX77826.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
 gi|329746743|gb|AEC00100.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
          Length = 669

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 212/713 (29%), Positives = 358/713 (50%), Gaps = 47/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + I++ +KEL+ L + I +H+  YY    P I D EYD L  +  A+   +P+L      
Sbjct: 1   MDIQEVKKELAQLRRTIRHHNVRYYNDDNPEISDYEYDQLMLQLKALEREYPELI---TE 57

Query: 72  NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           N P  K+GG    +    V H +P LSL+ +++ E++  F+  I          +  F +
Sbjct: 58  NSPTQKVGGTAKRTAGTLVRHDVPMLSLQDVFSREEIEAFVRDIEARM-----ENPVFVV 112

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           E KIDG  + +RYE G    A  RGDG   GEDV+   + I  + + L   +P   EVRG
Sbjct: 113 EEKIDGLSLALRYENGTLSRAITRGDGIVQGEDVTENAKVIKDVVQKLKEPLPY-FEVRG 171

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248
           EVY++K  F A+N+    +G K +ANPRN A+G LR+L+      R L+ FV  L     
Sbjct: 172 EVYMTKAAFEAVNERRQLIGLKLFANPRNCAAGTLRQLDSRITKERGLSLFVFNLQAVRG 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              +   E    M   G  V +      T   +     ++ + R  LPYDIDG V K+++
Sbjct: 232 KDFQTHVEAYDFMNRQGIKVIHAFHVCRTAEEVWDAIEQIGASRGDLPYDIDGAVVKLND 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           FS ++ LG  +++PRW I++K+  ++  + +  I + +GRTG +TP A  +P+ + G  +
Sbjct: 292 FSQRESLGATSKAPRWAIAYKYPPEEKESVVRSITLSVGRTGRITPTATFDPIRLCGTTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN+D+I  L           D+RVGD V+V ++GE+IPK+  ++  +R    +PF
Sbjct: 352 ERATLHNQDFIDDL-----------DVRVGDTVVVYKSGEIIPKIKAVVKEKRPEGTEPF 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
                CP+C ++  R+ +    K           AC AQ    + +FVSRDA +I+GLG+
Sbjct: 401 KIGDRCPVCGAKAEREADSADVK-------CINQACPAQVESHILNFVSRDAMDIKGLGE 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +    +       +    DIF L+  ++   ++    +   + +   L  +I + +  
Sbjct: 454 KNIAALIEK----GFLHTIVDIFRLKEHREELISQG---VVGKEKNTDKLLAAIEEAKKN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
             +R +  LGI  +G   A +L +++ + +      +           +++ V  +G+  
Sbjct: 507 EPQRLLTGLGIPGIGKAAAAALMQHFKTLEALENASD----------EAILAVRDMGETS 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
             AI  ++QN  N      L +    +  +       E+ +   V TGTL+   R +  E
Sbjct: 557 VAAIRSYFQNEGNAKICRELQQLGVATAVQERAAQGDELADMSFVVTGTLRHFGRREITE 616

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            + Q G  V++ +S+KTD ++ G+N GSKL+KA+QLG++I+ EE+FL L+ + 
Sbjct: 617 LIEQHGGRVTSSVSKKTDCLVAGENAGSKLQKAEQLGIRILTEEEFLQLIGRK 669


>gi|317507336|ref|ZP_07965075.1| DNA ligase [Segniliparus rugosus ATCC BAA-974]
 gi|316254381|gb|EFV13712.1| DNA ligase [Segniliparus rugosus ATCC BAA-974]
          Length = 712

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 228/723 (31%), Positives = 348/723 (48%), Gaps = 53/723 (7%)

Query: 12  LSIEQA-----RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +S  +A     ++    L  ++  H   YY    P + D+E+DAL R   A+    P+LA
Sbjct: 1   MSEGKAAGTTPQERWLRLADQVKEHQFRYYVLDSPTVTDAEFDALLRELQALEDEHPELA 60

Query: 67  RSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
                + P   +GG        +V H  P LSL+ ++N ED   +  R+     +  +  
Sbjct: 61  ---SASSPTKLVGGAGFTTDFAEVGHVEPMLSLDNVFNEEDFLAWAERV----AQGAEQP 113

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNI 181
           I F  E KIDG  I++ YE+G+   AA RGDG +GEDV+  +R I  +P  LS       
Sbjct: 114 INFDCELKIDGLGISLVYERGRLARAATRGDGRTGEDVTLNVRTIADVPHELSLAAGEEP 173

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240
           PE++EVRGEV+    DF ALN  ++A G+ P+ANPRN+A+G LR+ NP     R L    
Sbjct: 174 PELLEVRGEVFFKLKDFEALNASLVAEGKAPFANPRNSAAGSLRQKNPAITAKRKLAMLC 233

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           HGLG T       + E  QK++  G PV+       +   ++ +       R  + YDID
Sbjct: 234 HGLGATGGWSPATRSEAYQKLKDWGLPVSPYNTTLASPEAVLGHIRHWGERRHEVEYDID 293

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           GLV KV+E SL  +LG  +R+PRW I++K+  ++  T+LLDI + +GRTG +TP A +EP
Sbjct: 294 GLVVKVEEMSLYARLGNTSRAPRWAIAYKYPPQEVQTKLLDIRVNVGRTGRVTPFAFMEP 353

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G+ +  ATLHN   +             + + +GD V++++AG+VIP+V+  +V  
Sbjct: 354 VLVAGSTVGLATLHNASEVAR-----------KGVLIGDTVVLRKAGDVIPEVLGPVVAL 402

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R    + F  P+ CP C + +         +     RC     C AQ  ER+ H   R A
Sbjct: 403 RDGSEREFVMPAQCPECGAELA-----PAKEADVDIRCPNARTCPAQLRERVFHVAGRGA 457

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST----TKIENILGFGDVSVT 536
           F+IE LG +      K       I    D+F L   +   T           G    +  
Sbjct: 458 FDIEALGYEAAVDLLKHNA----IEDEGDLFDLDEERLLKTELFVNTSGKNAGQLSANGR 513

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
            L  ++ + ++  L R + +L IRHVG   AR+LA  + S                 D  
Sbjct: 514 KLLQNLEQAKSRDLWRVLVALSIRHVGPTAARALATRFGSVDAVFGA----------DQE 563

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
           +L  V  VG  IA ++ E+++   +   VE             E++    +    +V TG
Sbjct: 564 ALAEVDGVGPTIAASVREWFEVDWHRSIVERWRAAGVTMAEDREQS-PQTLAGLTIVVTG 622

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L    R   QE +   G   S  +S+KT  ++ G+  GSK +KA+QLGV I++E  F+ 
Sbjct: 623 SLDGFTRESVQEAIIAHGGKASGSVSKKTSYVVAGEGGGSKRDKAEQLGVPIIDEAAFVQ 682

Query: 717 LLQ 719
           LL 
Sbjct: 683 LLA 685


>gi|313836700|gb|EFS74414.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA2]
 gi|314929893|gb|EFS93724.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL044PA1]
 gi|314972321|gb|EFT16418.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA3]
 gi|328907750|gb|EGG27514.1| NAD-dependent DNA ligase LigA [Propionibacterium sp. P08]
          Length = 740

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 204/746 (27%), Positives = 329/746 (44%), Gaps = 74/746 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR   + L Q I    D YY    P + D+ YD L      +    P+L     P+ P
Sbjct: 18  AEARHRWTELAQRILDAQDAYYANDAPTMSDAAYDQLMVELKKVEDDHPEL---RSPDSP 74

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ I+  ++L ++++R+     K       F  E K
Sbjct: 75  TQRVGAPQRVTDFAPVEHLERLLSLDNIFTRDELSEWMSRVVAAVGKIPG----FLCELK 130

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           IDG  + + Y  G+ +  A RGDG  GEDV+A +R I  IP+ L+ +     +EVRGEV+
Sbjct: 131 IDGLAVDLVYRDGQLISGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVF 190

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+ANPRNAA+G LR+ +         +  VHG+G       
Sbjct: 191 FPVADFADLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTESRPLSMIVHGIGAVEGHDF 250

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+  L
Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVENADEVHDFVTHWGESRDEASHQIDGVVIKVDDVCL 310

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 311 QRKLGVTSRAPRWAIAYKYPPEEVNTELLDIRVSVGRTGRVTPYGVMRPVTVAGSTVEMA 370

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R    + FS P
Sbjct: 371 TLHNAFEVKR-----------KGVLLGDTVVLRKAGDVIPEILGPVVELRDGSEREFSMP 419

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  +            RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 420 DRCPSCGTELAYE-----KDGDKDLRCPNAKGCPSQLRERVFGLASRGALDIEALGWEAA 474

Query: 492 DFFFKSED----------------------PAFSIRIPADIFTLQR-------------- 515
                 E+                       A    +  D     +              
Sbjct: 475 IALTDPENQRPQDEEAAEGLPERQTAVLSSEAGLFDLQPDDLAGVKVWRRRKVSGKLSPW 534

Query: 516 --RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                  T            +   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 535 QLEPYFFTKATAKKPSVPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +               L  V  VG+IIA+++  ++    +   V        
Sbjct: 595 FGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFDVEWHQEIVSRWAAAGV 644

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     ++   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 645 RMADDRDEAPEQTLKGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GSK  KA+ LG  I++E  F +LL 
Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLD 730


>gi|322389291|ref|ZP_08062851.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC
           903]
 gi|321144035|gb|EFX39453.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC
           903]
          Length = 652

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 216/701 (30%), Positives = 353/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L + ++ +   YY    P + DSEYD L R    +  A PD      P  P ++
Sbjct: 2   KTRMKELVELLNRYAYEYYTKDAPSVSDSEYDQLYRELVELETAHPDEIL---PESPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+ +     +  SI +  E KIDG 
Sbjct: 59  VGGVVLKGFTKYQHQYPLYSLQDAFSREELEAFDQRVRK-----EFPSISYVCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GED++  ++ +  IP VL   +   I VRGE Y+ +  
Sbjct: 114 SISLTYENGVLVTGATRGDGSVGEDITENLKRVKDIPLVLPEPVN--ITVRGECYMPRAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N      G   +ANPRNAA+G LR+L+ T I    N       + S      Q  +
Sbjct: 172 FDRVNQIRQENGEPEFANPRNAAAGTLRQLD-TTIVAKRNLATFLYQEVSPTDQSSQEGV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+K+ CLGF VN     A     I  +  ++  +R  LPYDIDG+V KV++ ++Q++LG 
Sbjct: 231 LEKLACLGFVVNQERVLAEDMEQIWDFIQKVAQLREDLPYDIDGIVIKVNDLAVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   ++L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAKILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DI   D V+V +AG++IP V+ ++ ++R  D    + P+ CP C
Sbjct: 351 YI-----------AEKDIHQDDTVIVYKAGDIIPAVLRVVKDKRVSDQAL-AIPTQCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           QS ++   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 QSELLHFEDE------VALRCINPL-CPAQIKEGLNHFASRDAMNITGLGPAVVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   A I+ L      +      + GF + S   LY++I   +  S E+ +F L
Sbjct: 450 --AAQLVEDVAGIYRLTVEDLLT------LEGFKEKSAEKLYEAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG+++++ L + +      A            D   +  +  +G ++A+++  ++ 
Sbjct: 502 GIRHVGSKVSQILLQEFHDLDQLATA----------DPERIASIDSLGMVVAESLKRYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   ++ L +          +    + +    +V TG L+++ R +A+  +  LGA 
Sbjct: 552 QEGSKRLLQELKEAGVNMAYLGEKVAADAALSGMTVVLTGKLERLTRSEAKAKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++ G + GSKL KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTDLVVAGSDAGSKLTKAQELGIQVEDEAWLESL 652


>gi|257125939|ref|YP_003164053.1| DNA ligase, NAD-dependent [Leptotrichia buccalis C-1013-b]
 gi|257049878|gb|ACV39062.1| DNA ligase, NAD-dependent [Leptotrichia buccalis C-1013-b]
          Length = 706

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 234/735 (31%), Positives = 383/735 (52%), Gaps = 50/735 (6%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           KK+ +   + ++  + +++   L  EI YH++ YY    PII D EYDAL R    +   
Sbjct: 11  KKQNINNEKNINFSKIQEKYKKLRNEIEYHNNLYYNEDNPIISDMEYDALMRELKQLEQE 70

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW--- 118
           +P+L      N P  KIGG  +    KV H  P LSL   +NI ++  F  R+ +     
Sbjct: 71  YPELL-ENSENSPTKKIGGTASEKFSKVRHRTPMLSLSNTYNISEIEDFDKRVKKIILSQ 129

Query: 119 ---QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175
               K +D ++ + LE K+DG  I++ YE G+ V A  RGDG  GEDV+  IR I +IP+
Sbjct: 130 IDENKNNDENLEYILELKLDGLSISLIYENGELVQAVTRGDGQIGEDVTENIREISSIPK 189

Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITR 234
            L   +   +EVRGE+ +  ++F  +N E    G   +ANPRNAASG +R+L+ T    R
Sbjct: 190 KLKDPVS--LEVRGEIILPISNFNRINQEREDDGEDVFANPRNAASGTIRQLDKTIVADR 247

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            L+ +++ L            E ++ ++ LGF       +   F  +    ++    R T
Sbjct: 248 GLDCYLYYLVNAENYGINTHLESIEYIKNLGFQTTGVFEKYTDFTELEKSIDKWHDKRKT 307

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L Y+ DGLV KV+ F+L + LG   +SPRW I++KF  +Q  T+L D+  Q+GRTG++TP
Sbjct: 308 LDYETDGLVIKVNNFALYETLGYTTKSPRWAIAYKFPAEQVKTKLTDVTFQVGRTGVITP 367

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA LE VN+ G+++  A+LHN D I+            +DI++GD V+V++A E+IP+VV
Sbjct: 368 VAELEAVNLSGSVVKRASLHNFDEIRR-----------KDIKIGDNVIVEKAAEIIPQVV 416

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
           +++ ++R         P+ CP+C S +  +        + A +C   L C  +   ++ +
Sbjct: 417 NVVFDDRTGKEIEIQEPTNCPVCNSELSHEEG------LVALKCHNPL-CPEKVKRQIAY 469

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           FVSRDA NI GLG + ++ F +       I+   DI++L++ ++    ++EN+   G  S
Sbjct: 470 FVSRDAMNISGLGDKIVEKFIE----LGKIKTIVDIYSLEKYRE----ELENLEKMGQKS 521

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
           V NL +SI   +     + +++LGI  VG   A  L K + + +N            N  
Sbjct: 522 VDNLINSIESSKTRDFSKVLYALGIPFVGKFNANLLTKTFKNIENL----------KNQS 571

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH---EKNVSSEIENKK 651
             +L+ V  +GD +A A+  F  +  N   +  L              EK   + I++K 
Sbjct: 572 IENLLAVKGIGDKVAVAVNTFLNDENNWKIITDLQNIGLQFAIDETNLEKIADNPIKDKN 631

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
            + TG LQK +R+  ++ +   G    +++S+  D +I G+  GSKLEKA++LG++++ E
Sbjct: 632 FLATGKLQKYKRNDIKDIILSKGGNYLSVVSKNLDFLIAGEKAGSKLEKAEKLGIRVLTE 691

Query: 712 EQF-LFLLQQYNTTL 725
           E F    L+  N  +
Sbjct: 692 EDFEKEFLENINENI 706


>gi|290957204|ref|YP_003488386.1| DNA ligase [Streptomyces scabiei 87.22]
 gi|260646730|emb|CBG69827.1| putative DNA ligase [Streptomyces scabiei 87.22]
          Length = 739

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 220/735 (29%), Positives = 356/735 (48%), Gaps = 64/735 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R++ + L ++I  H   YY    P++ D+E+D L R  +A+   + +L     P+ P  K
Sbjct: 23  REKHARLAEQIEEHRFRYYVKDAPVVSDAEFDELLRTLEALEDEYGEL---RTPDSPTQK 79

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +  E    L +V H    LSL+ +++ E L  +  R+ +     D +      E KIDG 
Sbjct: 80  VAVEYETDLAEVEHRERMLSLDNVFDDEGLAAWAERVAKDVGTTDYH---LLCELKIDGL 136

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVYISKN 196
            + + YE G+   AA RG G +GED++  +R I  IP  L  +     +E+RGEVY    
Sbjct: 137 AVNLTYEDGRLTRAATRGTGRTGEDITPNVRTIAEIPHRLKGDRVPRLVEIRGEVYFPME 196

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG--KTSEIFAKG 253
            F  LN+  +A G KPYANPRN+ASG LR+ +P    T  L+  VHG+G  +  +     
Sbjct: 197 AFQGLNERRVAAGEKPYANPRNSASGSLRQKDPKVTATLPLHMVVHGIGALEGFDGGFTR 256

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E    +R  G P     R  +   G+  +       R ++ ++IDG V K+DE  LQ 
Sbjct: 257 LSEAYDLLRSWGLPTAEHNRVVDDLDGVREFIAYYGENRHSVAHEIDGAVVKLDEIRLQG 316

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  AR+PRW I++K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ +  ATL
Sbjct: 317 RLGSTARAPRWAIAYKYAPEEVNTKLIDIKVGVGRTGRVTPYAQVEPVTVAGSEVEFATL 376

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QPFSFPS 432
           HN++ +K            +++ +GD V++++AG+VIP+++  +V+ R  +  +PF  P+
Sbjct: 377 HNQEVVK-----------AKNVLIGDTVVIRKAGDVIPEILGPVVDLRDENETRPFVMPT 425

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK---- 488
            CP C + +         +     RC    +C AQ  ER+ +   R+  +IE  G     
Sbjct: 426 ECPECGTPLRPM-----KEGDIDLRCPNARSCPAQLRERVSYLAGRECLDIEHFGGVAAA 480

Query: 489 --------------QQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTS-----TTKIENI 527
                          + D F  + +    I+         L +    +      T   N 
Sbjct: 481 ALTRPLEPADPPLVDEGDLFDLTVEKLLPIKAYVLDADSGLPKHDPKTGEPKVVTVFANQ 540

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
            G    +   L   I + ++  L RF+  L IRHVG   A++LA+ + S     Q     
Sbjct: 541 KGEPKKNTLALLQKIEEAKSRPLARFLNGLSIRHVGPVAAQALAREFRSIDRIEQATQ-- 598

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG--RHEKNVSS 645
                     L  V  VG I+A+A+ E++    +   +        P       E     
Sbjct: 599 --------EELTAVDGVGAIVAKALEEWFAEEWHREIIRKWKAAGVPLEDRGAGEDEGPR 650

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VG+NPGSK +KA QL 
Sbjct: 651 PLEGLTVVVTGTLEHHTRDGAKEALQNRGAKVTGSVSKKTSFVVVGENPGSKHDKAMQLK 710

Query: 706 VKIMNEEQFLFLLQQ 720
           V ++NE+ F  LL+Q
Sbjct: 711 VPVLNEDGFAVLLEQ 725


>gi|239917127|ref|YP_002956685.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
 gi|239838334|gb|ACS30131.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
          Length = 797

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 229/799 (28%), Positives = 357/799 (44%), Gaps = 99/799 (12%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
              + +     R+E   L + +      YYQ   P I D+EYDAL RR + +    P+L 
Sbjct: 11  PDPQDIPAADLREEYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLEDLEALHPELV 70

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-KDDNS 125
                + P  ++GGE++ +   V H     SLE ++++E+L  +  R  +   + +   +
Sbjct: 71  ---SNDSPTQEVGGEVSEAFAPVRHGARMYSLEDVFSVEELEVWFRRAAQALTQVRPGVA 127

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184
             + +E KIDG  + +RY  G+ V AA RGDG +GEDV+A +R I  IP  LS    P  
Sbjct: 128 PRWLVEVKIDGLAVALRYRDGRLVQAATRGDGVTGEDVTANVRTIGDIPHELSGEGWPAE 187

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
            EVRGEV++S   F  LN      G+ P+ANPRNAA+G LR+ +P     R L  FVHG+
Sbjct: 188 FEVRGEVFMSSAAFAELNARRAEEGQPPFANPRNAAAGALRQKDPAVTAQRPLAMFVHGI 247

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI-----VSYYNEMKSIRSTLPYD 298
           G       + Q+E    +   G PV+   R+            V+   E    R  L ++
Sbjct: 248 GSVEAFGLESQHEAYDALASWGLPVSPYTRRVEGADEEALAAVVAVIEEYGRRRHELIHE 307

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V K D F+ Q+ LG  +R PRW  ++K+  ++  T L DI + +GRTG +TP A L
Sbjct: 308 IDGIVLKADAFADQRYLGHTSRVPRWAAAYKYPPEEVHTLLRDIAVSVGRTGRVTPFAVL 367

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G+ ++ ATLHN+D +K            + + +GD V+V++AG+VIP+VV  ++
Sbjct: 368 EPVTVAGSTVSLATLHNQDVVK-----------AKGVLIGDTVVVRKAGDVIPEVVGPVL 416

Query: 419 NERHP------DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472
             R        + + F  P+ CP C + +         +     RC    +C AQ   R+
Sbjct: 417 PLREKAIEAGRELREFVMPAHCPSCGTPLA-----PAKEGDVDLRCPNARSCPAQLAGRV 471

Query: 473 KHFVSRDAFNIEGLGKQQLDFFFK-------------SEDPAFSIRIPADIFTLQRRQQT 519
           +H  SR AF++E LG++   +  +               +    I   A IF L      
Sbjct: 472 EHLASRGAFDVEALGEEAARWLVQGPGEDPAEHEGHVRPEGPGPITAEAQIFDLASGTPE 531

Query: 520 STTKIENILG------------FGDVSVTNLYDSINKRRNISLERFIFSLGI-------- 559
           + T      G                  T +   +      +L+ + F+ G         
Sbjct: 532 AITGPRGEDGLTDLQRSLGAVRVWREGRTKVDGRMVPSGVFTLKPYFFTAGTAKRPSAPT 591

Query: 560 ---------------------------RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
                                      RHVG   ARSLA  + S                
Sbjct: 592 ANTLRLFDELEKAKSQPLWRTLVALSIRHVGPTAARSLATAFGSMTALRAAAEA------ 645

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
            D   L  +  VG IIA A++E++    +   V+             +++    +E   +
Sbjct: 646 GDRDRLAEIDGVGPIIADALIEWFAEDWHREIVDRWTAAGVAMEDEQDESTPRTLEGLTV 705

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TG+L+   R  A+E +   G   S  +S+KTD ++ G+  GSKL+KAQ LGV +++E 
Sbjct: 706 VVTGSLEGFSRDSAKEAILVRGGKASGSVSKKTDFLVAGEAAGSKLDKAQSLGVPVLDEA 765

Query: 713 QFLFLLQQYNTTLRIHDDD 731
           +F  LL      +R  D D
Sbjct: 766 EFTALLAGGPDAVRPADTD 784


>gi|307244055|ref|ZP_07526174.1| DNA ligase (NAD+) [Peptostreptococcus stomatis DSM 17678]
 gi|306492579|gb|EFM64613.1| DNA ligase (NAD+) [Peptostreptococcus stomatis DSM 17678]
          Length = 702

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 233/710 (32%), Positives = 369/710 (51%), Gaps = 47/710 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S ++A   +  L + ++YH D YY    P I D +YD L +    +  AFP+  +    
Sbjct: 22  ISKKEAGLMVGDLIEILNYHSDRYYNSDSPEISDMDYDRLMKSLILLEEAFPEYKKK--- 78

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG       +  H  P LSL  ++N E++R F  R+     +  +  + + +E
Sbjct: 79  DSPTVRVGGRALDKFDQYQHERPMLSLSNVFNNEEIRDFDRRVRGGL-EPANGQVNYVVE 137

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + + YE G     A RGDG+ GE+V+  I+ I +IP  +       +  RGEV
Sbjct: 138 TKIDGLSVGLTYEDGYLRVGATRGDGYIGENVTENIKTIASIPIKIDEKRK--LVARGEV 195

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           YISK+DF A+N        + YANPRN A+G LR+L+P     R L+ F+  L    ++ 
Sbjct: 196 YISKSDFEAVNAYQEDHDLQTYANPRNLAAGSLRQLDPKLAAKRPLDIFIFNLENIDDLG 255

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   +    M+ LG  VN   +       ++ Y       RS+LPY+IDG+V KVD  +
Sbjct: 256 IEKHSQSFDYMKSLGLKVNEEYKLCKDIEEVIDYIEYWTENRSSLPYEIDGMVIKVDSIA 315

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG  A+SPRW  + KF  ++  T+LLDI++++GRTG +TP A LEPV + G +++ 
Sbjct: 316 QREALGFTAKSPRWATAFKFPAERKKTKLLDIEVEVGRTGTITPTAILEPVRLAGTMVSR 375

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYIK            RDIR+GDRVLV++AG++IP+VV++ +++R      F  
Sbjct: 376 ATLHNEDYIK-----------ERDIRIGDRVLVQKAGDIIPQVVEVSLDDRTGQEVMFDM 424

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C    VR          AA +C   ++C AQ    + HFVSRDA +IEG+G+  
Sbjct: 425 PHECPACGQETVRLDGE------AAVKCIN-ISCPAQIRRGIIHFVSRDAMDIEGMGESI 477

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +            I+  AD++            + ++   G  SV NL  SI K ++  L
Sbjct: 478 ITSLLDK----GVIKDIADLY------YMDPDILVSLDRMGQKSVANLMASIEKSKSNDL 527

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R I  LGIR VG + A+ LA    S                     LI++   G I++ 
Sbjct: 528 WRLINGLGIRFVGVKGAKLLADACGSMDKIMAASE----------EDLIQIEEFGQIMSD 577

Query: 611 AIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           ++V+F+   +N   VE L +       I + ++ ++   E  K+V TGTL  ++R+ A+ 
Sbjct: 578 SVVKFFHEDKNKLTVEKLRQAGLNMEVIEKEDQGIAKVFEGMKIVLTGTLPSMKRNDAKA 637

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + +     ++ +S+ T  ++ G+  GSKL+KA  LGVK+++E +F+ L+
Sbjct: 638 LIEERAGKATSSVSKSTSFVLAGEEAGSKLDKALSLGVKVIDEAKFMELV 687


>gi|84498237|ref|ZP_00997034.1| DNA ligase [Janibacter sp. HTCC2649]
 gi|84381737|gb|EAP97620.1| DNA ligase [Janibacter sp. HTCC2649]
          Length = 731

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 208/734 (28%), Positives = 346/734 (47%), Gaps = 50/734 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            ++ R E + L ++ + H   Y+    P + D EYD L +R + +   +P L     P  
Sbjct: 30  PDEIRHEWTDLAEQATTHQFAYHVKDSPTVSDGEYDKLMKRLNMLEDEYPSL---RTPES 86

Query: 74  PLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
           P   +GG + +     V H    LSL+  ++ E++ ++  R+ R           +  E 
Sbjct: 87  PTQSVGGAVFSTDFESVDHLERMLSLDNAFSPEEMVEWNARVTRDAGSAFH----YLCEL 142

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVR 188
           KIDG  I + YEKG+   A  RGDG +GEDV+  +R +  IP  L       +P+++EVR
Sbjct: 143 KIDGLAINLLYEKGRLTRALTRGDGRTGEDVTLNVRTVRGIPTELKGTKKHPVPDLVEVR 202

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY     F  LN +++  G+ PYANPRN A+G LR+ +P    +R L   VHG+GK  
Sbjct: 203 GEVYFPIEAFGELNAQLVEAGKPPYANPRNTAAGSLRQRDPRVTASRELRMLVHGIGKRE 262

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 Q E    ++  G PV+   R  +T   +  +       R  + ++IDG+V KVD
Sbjct: 263 GFALTRQSEAYAALQEWGMPVSTHFRVVDTIEEVNEFIVSTGEHRHDVEHEIDGVVVKVD 322

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E  +Q+QLG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   ++PV + G+ 
Sbjct: 323 EIVVQRQLGATSRAPRWAIAYKYPPEEVNTVLLDIQVNVGRTGRVTPFGVMKPVVVAGST 382

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHN   +             + + +GD +++++AG+VIP+++  +V+ R    + 
Sbjct: 383 VERATLHNATEVTR-----------KGVLIGDTIVLRKAGDVIPEILGPVVDLRDGSERA 431

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP C + +         +     RC    +C +Q  ERL     R AF+IE LG
Sbjct: 432 FVMPVDCPSCGTPLA-----PAKEGDKDIRCPNSRSCPSQLRERLSGLAGRGAFDIEALG 486

Query: 488 KQQLDFFFKSEDPA------FSIRIPADIFTLQRRQQTSTTKIENIL--GFGDVSVTNLY 539
            +      +S                     L  R    T   + ++           L 
Sbjct: 487 WEGSVALLESGVLTDESTLFGLTDADIARVPLYTRAAKKTDSEDAVIDGRVPSAIGAKLV 546

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            ++   +   L R +  L IRHVG   AR+LA+++ S                     L 
Sbjct: 547 ANLESAKTQPLWRVLVGLSIRHVGPTAARALAQHFGSMDGIRAAT----------VEELS 596

Query: 600 RVPLVGDIIAQAIVEFYQ---NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            V  VG IIA+++ +++    N  ++  V+    +        + ++   +E   +V TG
Sbjct: 597 GVEGVGGIIAESVRDWFDREGNEWHVAIVDQWAADGVRMEDERDTSIEQTLEGLTVVVTG 656

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +++   R +A+E +   G   S  +S+KTD ++VG   GSK  KA++LG+ I++E  F+ 
Sbjct: 657 SMEGFTRDEAKEAILSRGGKASGSVSKKTDYVVVGPGAGSKEAKARELGLTILDEAGFVT 716

Query: 717 LLQQYNTTLRIHDD 730
           LL+          D
Sbjct: 717 LLESGAAEGSSAQD 730


>gi|258404928|ref|YP_003197670.1| DNA ligase, NAD-dependent [Desulfohalobium retbaense DSM 5692]
 gi|257797155|gb|ACV68092.1| DNA ligase, NAD-dependent [Desulfohalobium retbaense DSM 5692]
          Length = 678

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 245/721 (33%), Positives = 387/721 (53%), Gaps = 57/721 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +  +  ++SL + I +HD  YY    P I D+EYDAL +   A+ H +P+L   +DP
Sbjct: 1   MAEQSVQSRVASLRETIRHHDYLYYVLDAPQISDNEYDALFKELQALEHRYPEL---DDP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++G +   +     HS+P  SL+ ++++E+ + ++ R+ R         I F ++
Sbjct: 58  ASPTKRVGQKPLAAFAHREHSLPMASLDNVFSLEEFQTYVQRLERLL---PGEEITFWVD 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVR 188
           PK+DG  + + +E G++V A  RGDG  GEDV+A +R + T+P  L     E+   IEVR
Sbjct: 115 PKMDGLAVEVIFEAGRYVAACTRGDGRVGEDVTAQMRTVRTVPLQLREEGVEVPDYIEVR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV + ++DF  LN      G +P+ANPRNAA+G +R+L+P     R L FF +G+G   
Sbjct: 175 GEVVMHEDDFALLNKRQTENGARPFANPRNAAAGSVRQLDPEVTAKRPLRFFAYGVGVVR 234

Query: 248 EI----FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                     Q E++Q +R LG PV    R A +   + +YY ++ + R +L ++IDG+V
Sbjct: 235 WSGAKTVWSRQSEVMQGLRELGLPVAPKARWAESAAAVQTYYQDLGANRHSLGFEIDGVV 294

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVD    Q +LG  +R+PRW ++ KF   QA T L DI +Q+GRTG+LTPVA L PV +
Sbjct: 295 AKVDRLEQQHRLGSTSRAPRWALALKFPAHQAETVLEDIQVQVGRTGVLTPVAVLRPVEV 354

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  ++ ATLHNED I+            + +RVGD VLV+RAG+VIP+VV  + ++R  
Sbjct: 355 GGVTVSRATLHNEDEIR-----------AKGLRVGDPVLVQRAGDVIPEVVRPLTDKRTG 403

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           + + F FP  CP C S V R  +        A RC    AC AQ +++L HFVS+   +I
Sbjct: 404 EEKTFVFPQTCPACGSPVSRLGDE------VARRCVNA-ACPAQVVQQLIHFVSKAGLDI 456

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG++ +  F         +R PAD+F L+ R          +   GD S  N+  +I 
Sbjct: 457 EGLGERWVQIFVDQ----GLVRSPADLFRLKERDLV------PLERMGDKSARNMIQAIA 506

Query: 544 KRRNISL-ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
             ++ +  ++ I +LGIR VG   A  LA  +   +  A+           D  +L  +P
Sbjct: 507 SAKSSARLDQLISALGIRLVGRRTAEILATSFEDLEALAEA----------DSETLQHIP 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH----EKNVSSEIENKKLVFTGTL 658
            +G  +A ++  F+  P N   +  L +             + + S+ +E  + V TG L
Sbjct: 557 DIGPEVAASLRRFFTTPANQALIRDLHQLGVWPRRETGNGSDADQSAPLEGLRFVLTGAL 616

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R  A++ +   G  V + +S K D ++ G+NPGSKL+KA++L + +++E     LL
Sbjct: 617 SDMSRSAAKDAIESRGGKVVSAVSSKVDYVVAGENPGSKLDKARELDIAVLDETGLHDLL 676

Query: 719 Q 719
            
Sbjct: 677 A 677


>gi|270292770|ref|ZP_06198981.1| DNA ligase, NAD-dependent [Streptococcus sp. M143]
 gi|270278749|gb|EFA24595.1| DNA ligase, NAD-dependent [Streptococcus sp. M143]
          Length = 652

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 214/700 (30%), Positives = 359/700 (51%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   KRMNELVALLNRYASEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKELPHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGATRGDGSIGENITENLKRVKDIPLTLPEKL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q ++L
Sbjct: 173 DLVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 KHLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLAGQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCD 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S+++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SQLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ L+            + G  + S + LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLKEEDF------LLLEGVKEKSASKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +++ S +N AQ           D   +  +  +G +IA+++  F+  
Sbjct: 503 IRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGSVIAKSLQTFFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   ++ L +       +       + +    +V TG L++++R +A+  +  LGA V
Sbjct: 553 EGSKILLDELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652


>gi|260577534|ref|ZP_05845474.1| DNA ligase [Corynebacterium jeikeium ATCC 43734]
 gi|258604338|gb|EEW17575.1| DNA ligase [Corynebacterium jeikeium ATCC 43734]
          Length = 688

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 200/716 (27%), Positives = 337/716 (47%), Gaps = 57/716 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +     L  ++ +H   YY Y +P I D+++DAL +    +  A P++        P  +
Sbjct: 4   QSRWQELADQVRHHRQLYY-YGEPEISDADFDALLQELKDLEQAHPEVVTGA---SPTEE 59

Query: 78  IGGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +      +     V H    LSL+ +++ E L  ++ R           +  +  E KID
Sbjct: 60  VAPAPPTSSPFRNVDHREQMLSLDNVFDTEQLAGWLDRT---------PAKTYLTELKID 110

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEV 191
           G  I + Y  G+   A  RGDG +GED++   R +  IP  L        PE++E+RGEV
Sbjct: 111 GASINLLYIDGQLELALTRGDGTTGEDITHNARTLDDIPDTLHGTDEFPVPELVEIRGEV 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           +I   DF A+N +  A G K +ANPRNAA+G +R+ N      R L    HG+G      
Sbjct: 171 FIDVEDFAAMNAQRQAEGLKMFANPRNAAAGAMRQKNSADTAKRPLKLICHGIGAREGFS 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q++  + +   G PV+   +Q ++   +        + R    +++DGLV KVD   
Sbjct: 231 PASQHDAYRAIAAWGLPVSPYTKQVHSAKEVQQQVEYWGNHRHDAAHEMDGLVVKVDSLE 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  +R+PRW I++K+  ++A T L +I + IGRTG  TP A +EP  + G+ ++ 
Sbjct: 291 EQLELGHTSRAPRWAIAYKYPPEEAMTTLHNIRVGIGRTGRATPYAVMEPKYVAGSTVSM 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN                 + + +GD + +++AGEVIP+V+  + ++R    +PF F
Sbjct: 351 ATLHNPTEAHR-----------KGVMLGDTITIRKAGEVIPEVLGPVEDKRTGAERPFLF 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            +FCP C +R+       +    A  RC     C  Q   RL +  SR AF+I+ LG++ 
Sbjct: 400 STFCPECGTRLA-----PSKVGDADWRCPNTQYCPGQLHTRLTYLASRKAFDIDALGEKG 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                 S      +   +++F L       T+      G  + S   L + +   +   L
Sbjct: 455 AYDLIHS----GVLADESELFDLSAEDLEKTSSYATKAGKLNKSGETLLEKLQSAKEADL 510

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IRHVG   A++LAK++ S ++ A                +  +  V + IA+
Sbjct: 511 WRVLVALSIRHVGPTAAKALAKHFESVEDIASA----------SVEEMAGIDGVAETIAE 560

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-------SSEIENKKLVFTGTLQKIQR 663
           +I +++    +   V+              +         S+ +E   +V TG+L+   R
Sbjct: 561 SISDWFTVDWHRRIVDRWAAAGVRMHQEAGEASGEADGVDSALLEGLTIVVTGSLEDFDR 620

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             A+E +   G   +  +S+KTD ++ G+  GSKL+KA+ LGV +++E  F  LL+
Sbjct: 621 TAAKEAIEARGGKAAGSVSKKTDFLVAGEKAGSKLKKAEDLGVPVLDEAGFKELLE 676


>gi|314919398|gb|EFS83229.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA1]
          Length = 740

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 210/746 (28%), Positives = 338/746 (45%), Gaps = 74/746 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P
Sbjct: 18  AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 74

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ ++  ++L +++ R+     K  +    F  E K
Sbjct: 75  TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 130

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           IDG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L+ +     +EVRGEV+
Sbjct: 131 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 190

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+A PRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 191 FPVADFTDLNAALIEAGKNPFATPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 250

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+ SL
Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 310

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 370

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 371 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 420 DHCPSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474

Query: 492 DFFFKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIE 525
                 E+                       A    +  D        +RR+        
Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 534

Query: 526 NILGFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
            +  +                   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 535 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +               L  V  VG+IIA+++  +++   +   +        
Sbjct: 595 FGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GSK  KA+ LG  I++E  F  LL+
Sbjct: 705 AGSKETKARDLGRPILDEAGFRDLLE 730


>gi|312867643|ref|ZP_07727849.1| DNA ligase (NAD+) [Streptococcus parasanguinis F0405]
 gi|311096706|gb|EFQ54944.1| DNA ligase (NAD+) [Streptococcus parasanguinis F0405]
          Length = 652

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 213/701 (30%), Positives = 351/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L + ++ +   YY    P + DSEYD L R    +  A PD      P  P ++
Sbjct: 2   KTRMKELVELLNRYAYEYYTKDTPSVSDSEYDQLYRELVELETAHPDEIL---PESPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+ +     +  SI +  E KIDG 
Sbjct: 59  VGGVVLKGFTKYQHQYPLYSLQDAFSREELEAFDQRVRK-----EFPSISYVCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GED++  ++ +  IP VL   +   I VRGE Y+ +  
Sbjct: 114 SISLTYENGVLVTGATRGDGSVGEDITENLKRVKDIPLVLPEPVN--ITVRGECYMPRAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q  +
Sbjct: 172 FDRVNQIRQENGEPEFANPRNAAAGTLRQLDTKIV-AKRNLATFLYQEVSPTDQSSQEGV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+K+  LGF VN     A     I  +  ++  +R  LPYDIDG+V KV++ ++Q++LG 
Sbjct: 231 LEKLARLGFVVNQERVLAEDMEQIWDFIQKVAQLREDLPYDIDGIVIKVNDLAVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   ++L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAKILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DI   D V+V +AG++IP V+ ++ ++R  D    + P+ CP C
Sbjct: 351 YI-----------AEKDIHQNDTVIVYKAGDIIPAVLRVVKDKRVSDQAL-AIPTHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           QS ++   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 QSELLHFEDE------VALRCINPL-CPAQIKEGLNHFASRDAMNITGLGPAVVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   A I+ L      +      + GF + S   LY++I   +  S E+ +F L
Sbjct: 450 --AAQLVEDVAGIYRLTVEDLLT------LEGFKEKSAEKLYEAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG+++++ L + +      A            D   +  +  +G ++A+++  ++ 
Sbjct: 502 GIRHVGSKVSQILLQEFHDLDQLATA----------DPERIASIDSLGMVVAESLKRYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   ++ L +          +    + +    +V TG L+++ R +A+  +  LGA 
Sbjct: 552 QEGSKRLLQELKEAGVNMDYLGEKVAADAALSGMTVVLTGKLERLTRSEAKAKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++ G + GSKL KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTDLVVAGSDAGSKLTKAQELGIQVEDEAWLESL 652


>gi|124026855|ref|YP_001015970.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL1A]
 gi|166216227|sp|A2C5E6|DNLJ_PROM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123961923|gb|ABM76706.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL1A]
          Length = 690

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 220/720 (30%), Positives = 358/720 (49%), Gaps = 59/720 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L   ++  +  YY    P I D+ YD L R    I +  P L      + P  ++
Sbjct: 10  ERIKELRALLNKANYSYYVLDSPEIDDAVYDQLYRELIEIENIHPSLITD---DSPSQRL 66

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-----SIFFTLEPK 133
           GG  +     V H+IP LSL+  +N+ +L  +  RI +    ++ N      +    E K
Sbjct: 67  GGVPSKGFKNVEHNIPLLSLDNAFNLNELESWYGRISKLISSENKNIKKVDDLELICELK 126

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVY 192
           IDG  I++RYE G    AA RGDG +GED++  IR I TIP  L   N P  +E+RGE +
Sbjct: 127 IDGNAISLRYENGILTRAATRGDGKTGEDITTNIRTISTIPLRLLLENPPSWVEIRGEAF 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251
           +  N F  LN E     +  +ANPRN+ +G LR+L+P    +R L+FF + L        
Sbjct: 187 MPNNIFNKLNIERKNTDQPLFANPRNSCAGTLRQLDPKIVASRKLDFFAYSLYFPENWEP 246

Query: 252 KG--------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                     Q E L+ ++ +GF VN       T +    YY   +  +  L Y  DG+V
Sbjct: 247 TDNNFKKPISQSESLEFLKNIGFKVNTTYETTKTLNEANKYYKYWEVKKDFLAYATDGIV 306

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+D+F +Q  LG   ++PRW I+ K+  ++ +T+L  I  Q+GR+G +TPVA  E + +
Sbjct: 307 VKIDKFDIQNLLGATNKAPRWAIAVKYPAEEKATKLRKIIFQVGRSGAVTPVAEFESIEL 366

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  ATLHN   +  L           D+   D ++V++AGE+IP+V+ +I   R  
Sbjct: 367 AGTSVNRATLHNAKRLASL-----------DLHYEDTIIVRKAGEIIPEVIRVIKEFRKV 415

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DA+    P  CP C S+++ + N       A  +C     C A+    L+H+VS+ + NI
Sbjct: 416 DAKLVQLPQNCPECNSKLILESNE------AITKCIN-YGCEAKLKGLLRHWVSKGSMNI 468

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG++ ++           ++  AD++ L+         +  +  FG+ S  NL   IN
Sbjct: 469 DGLGEKIINQLVNE----GYVKSIADLYKLE------IDSLLELERFGEKSANNLLIEIN 518

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + +N +  + ++ LGI H+G   A+SL+  + S +          A   +    +  +  
Sbjct: 519 ESKNKNWHKQLYGLGIPHIGEANAKSLSNNFNSIEEL-------NAIAKESPEKISNIYG 571

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-----EKNVSSEIENKKLVFTGTL 658
            G+ +  +IV+++ +  N   ++ L K +  S+          N S+  + K  V TGTL
Sbjct: 572 FGNEMKDSIVKWFDDSNNQTLIKEL-KAIGFSLKESLDSNYNSNQSNVFDGKSFVLTGTL 630

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R +A+E +   G  VS+ +S+KTD ++ G+  GSKL KAQ+LGVKI+NE +   LL
Sbjct: 631 DSLTRDEAKELIESAGGKVSSSISKKTDFLVSGEKAGSKLNKAQELGVKIINENELKLLL 690


>gi|57234606|ref|YP_181338.1| DNA ligase, NAD-dependent [Dehalococcoides ethenogenes 195]
 gi|123759715|sp|Q3Z8W1|DNLJ_DEHE1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|57225054|gb|AAW40111.1| DNA ligase, NAD-dependent [Dehalococcoides ethenogenes 195]
          Length = 677

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 236/716 (32%), Positives = 363/716 (50%), Gaps = 57/716 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R E+ +L +EI+ H+  YY    P I DSEYDAL RR   +  A P+L  +   + P  +
Sbjct: 5   RTEIENLRREINRHNQLYYVQDNPEISDSEYDALLRRLKELEEAHPELVTA---DSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G E   +   V H  P LSL   ++  +L  +  R+ +      + +     EPK+DG 
Sbjct: 62  VGAEPLKAFGIVNHPYPLLSLANAFSDTELEAWYLRVKKLLG---NAAFQIDCEPKMDGL 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + Y  GKF   A RGDG  GE+++  +R I +IP     + P + E+RGEVY+ K  
Sbjct: 119 AVALTYRNGKFTTGATRGDGFQGENITRNLRTIHSIPLNTEEDAPPVFEIRGEVYLPKEG 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQY 255
           F  LN E    G   +ANPRNAA+G LR+L+P+    R L+ F++ LG   + +     +
Sbjct: 179 FAKLNRERADKGLSLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYAEDSLLPDSHW 238

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++L+    LGF +N   R  NT      YY EM   R +LPY+ DG+V+KVD  SLQ++L
Sbjct: 239 QILEYFSRLGFKINPRNRLVNTLEEAKEYYREMAENRDSLPYEADGVVFKVDSVSLQQKL 298

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G+  R PRW I++KF  +Q +T L  I I +GRTG L P A LEPVN+GG ++  A+LHN
Sbjct: 299 GDAGREPRWAIAYKFPAEQVTTLLRKIGISVGRTGTLNPYAILEPVNVGGVVVKQASLHN 358

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF-- 433
           ED I             +DIR GD V+++RAGEVIP+VV  ++ +R P+++PFS      
Sbjct: 359 EDDI-----------LRKDIREGDTVVIQRAGEVIPEVVAPVLAKRSPESKPFSMEETLF 407

Query: 434 --------CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                   CP+C   + R           A      ++C AQ   +L+HFVSR   +I G
Sbjct: 408 NPKLSRPACPVCGGEIYRPAGE-------AMHYCANVSCPAQFERQLEHFVSRGTMDIRG 460

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G+       +       ++  +D++ L             +   G+ S  N+  +I   
Sbjct: 461 IGESLSVILAQE----GLVKNVSDLYYLTAADL------LKLPRMGEKSADNIIKAIADS 510

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++  L+R IF LGIRHVG E A  L+  Y      A                L  +P +G
Sbjct: 511 KSRPLDRVIFGLGIRHVGNETAALLSSRYGDIWALAGA----------GLDELQTIPDIG 560

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRH 664
             IA +I  ++   +NI  +  L           + +     +   + V TG L  + R 
Sbjct: 561 AKIASSIKAYFSEEKNIAVIRRLETAGVKLASDQKPSYKPLPLSGVEFVVTGKLDSLSRE 620

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +AQ+ +  LG      +++ T  ++VG + GSKL KA+ +GVK ++E++F+ +L+Q
Sbjct: 621 EAQQKIRSLGGTAKDNVTKATRYLVVGADAGSKLAKARSMGVKELSEQEFINMLEQ 676


>gi|302542307|ref|ZP_07294649.1| DNA ligase, NAD-dependent [Streptomyces hygroscopicus ATCC 53653]
 gi|302459925|gb|EFL23018.1| DNA ligase, NAD-dependent [Streptomyces himastatinicus ATCC 53653]
          Length = 740

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 215/741 (29%), Positives = 351/741 (47%), Gaps = 62/741 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +AR E + L +++  H   YY    PI+ D+E+D L RR +A+    P+L     P+ P 
Sbjct: 12  EARDEHAKLAEQVEEHRFRYYVKDAPIVSDAEFDRLLRRLEALEEDHPEL---RTPDSPT 68

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+ G       +V H    LSL+  ++ ++L  +  RI +        +  F  E K+D
Sbjct: 69  QKVAGAYETEFTEVEHRERMLSLDNAFDDDELGTWADRIAKELG---TGAYHFLCELKVD 125

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYIS 194
           G  + + YE G+   AA RGDG +GED++  +R I  IP  L+ +  P ++EVRGEV++ 
Sbjct: 126 GLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAKIPNRLTGDRVPALVEVRGEVFLP 185

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
           +  F  LN  ++   + P+ANPRNAA+G LR+ +P    +R L+  VHG+G         
Sbjct: 186 RKAFEELNARLVEAEKPPFANPRNAAAGSLRQKDPKVTASRPLDMVVHGIGAREGFDIAR 245

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL--PYDIDGLVYKVDEFSL 311
             +  + +   G P     R  +T  G+  Y              ++IDG V K+DE  L
Sbjct: 246 LSQAYELLHEWGLPTAAHFRVVDTIEGVREYIAHYGDSEHRHSVEHEIDGAVIKLDEIPL 305

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R+PRW I+ KF  ++ +T+L+DI + +GRTG +TP A +EP+ + G+ +  A
Sbjct: 306 QGRLGSTSRAPRWAIAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPITVAGSEVEFA 365

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D +K            + + +GD V++++AG+VIP+++  + + R    + F  P
Sbjct: 366 TLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMP 414

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +         +     RC    +C AQ  ER+ +   R + +IE LG    
Sbjct: 415 AECPECGTPLQ-----PAKEGDVDLRCPNSRSCPAQLRERIFYLAGRKSLDIENLGYVAA 469

Query: 492 DFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI------------------------EN 526
               +  +PA   +R   D+F L+  Q                                 
Sbjct: 470 AALTQPLEPAEPPLRDEGDLFDLKIEQLLPIRSYVLDPDSGLPKRDPETGEEKVVTFFAT 529

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             G    +   +  +I   +   L R I  L IRHVG   A +LA+ + S    A+    
Sbjct: 530 QKGEAKKNALAMLANIEAAKQRPLARIITGLSIRHVGPVAAAALAREFRSLDRIAEADEE 589

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSS 645
            +A              VG IIA ++ +++    +   VE   +                
Sbjct: 590 ELAATE----------GVGGIIAASVKQWFAVDWHREIVEKWRRAGVRLEEEAGADEGPL 639

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            ++   +V TGTL+   R  A+E +   GA V+  +S+KTD ++VGDNPGSK +KA QL 
Sbjct: 640 PLKGLTVVVTGTLESHTRDGAKEALQNRGAKVTGSVSKKTDFVVVGDNPGSKYDKAMQLK 699

Query: 706 VKIMNEEQFLFLLQQYNTTLR 726
           V +++++ F  LL+Q     R
Sbjct: 700 VPVLDDDGFAVLLEQGPDAAR 720


>gi|322392021|ref|ZP_08065484.1| NAD-dependent DNA ligase LigA [Streptococcus peroris ATCC 700780]
 gi|321145119|gb|EFX40517.1| NAD-dependent DNA ligase LigA [Streptococcus peroris ATCC 700780]
          Length = 652

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 210/700 (30%), Positives = 357/700 (51%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + ++ L + ++ +   YY    P + DSEYD L R    +  A P+      PN P +++
Sbjct: 3   ERMNELVELLNRYATEYYTSDNPSVSDSEYDRLYRELVELEQAHPEQVL---PNSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +        ++ +  E KIDG  
Sbjct: 60  GGKILDGFEKYSHQYPLYSLQDAFSREELLAFDARVRKEL-----PNVTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE+G  V  A RGDG  GE+++  ++ +  IP  L   +   + VRGE Y+ +  F
Sbjct: 115 ISLTYEQGVLVVGATRGDGSIGENITENLKRVKDIPLTLPEAL--DMTVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q ++L
Sbjct: 173 DQVNQSRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRNSQEQVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A++   +  +  E+   R  LPYDIDG+V KV++   Q+QLG  
Sbjct: 232 KHLEQLGFVVNPRRVLAHSMDEVWQFIQEVGQERDQLPYDIDGVVIKVNDLVGQEQLGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAKLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C+
Sbjct: 352 I-----------SEKDIRKDDTVIVYKAGDIIPAVLRVVESKRISEEKL-DIPTNCPSCE 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S+++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SKLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNISGLGPSMVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ L             + G  + +   LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLTEHDF------LQLEGVKEKTAQKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +++ S +  AQ           D   +  +  +G +IA+++  ++  
Sbjct: 503 IRHVGSKASKLLVQHFHSIETLAQA----------DPEEVSNIETLGSVIAKSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   +  L +       +       + +    +V TG L+++ R +A+  +  LGA V
Sbjct: 553 EGSKILLRELKELGVSLDYKGQVVAGDAALSGLTVVLTGKLERLNRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++ G + GSKL+KAQ+LG++I +E     L
Sbjct: 613 TGSVSKKTDLVVAGADAGSKLQKAQELGIEIRDEAWLEGL 652


>gi|227509971|ref|ZP_03940020.1| NAD-dependent DNA ligase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190577|gb|EEI70644.1| NAD-dependent DNA ligase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 675

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 237/719 (32%), Positives = 370/719 (51%), Gaps = 53/719 (7%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ +QA      L ++++   D YY Y  P + DS YD   ++   +   FP +    
Sbjct: 4   EDMTEQQAESAAQELREKLNKWADEYYTYDSPSVEDSVYDQTYQQLVDLETTFPQIV--- 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  K+G        KV H IP LSL  +++IE+L+ F  R        +     + 
Sbjct: 61  TPDSPTQKVGDHTLPGFTKVPHEIPMLSLGDVFSIEELKAFADR----LSDSESVPFEYN 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  I++RYE G  V  A RG+G  GED++  ++ I +IP+   L+ P  IEVRG
Sbjct: 117 CELKIDGLAISLRYEDGILVQGATRGNGQIGEDITRNLKTIKSIPQR--LSRPINIEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           E Y+ K  F+ LN +    G  P+ANPRNAA+G LR+L+      R L+ F++ +    +
Sbjct: 175 ECYMPKESFVELNQQRQVEGVAPFANPRNAAAGSLRQLDSRVTAHRKLSTFMYNVANYDD 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +  Q  ML++++ LGF +N   + A+    I  Y       R TL Y IDG+V KV+ 
Sbjct: 235 LESDTQSGMLEELKKLGFTINADYQVAHNMDDIDQYVERYTKQRDTLAYGIDGIVIKVNS 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ+ LG   + PRW I++KF  ++A T + DI+  +GRTG++TP A ++ V + G  +
Sbjct: 295 LPLQRSLGATVKVPRWAIAYKFPPEEAETIVRDIEWTVGRTGVVTPTAVMDEVTLAGTTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN DY++            +DIR+ D V + +AG++IP++   + ++R  D+QP+
Sbjct: 355 SRASLHNPDYLR-----------EKDIRISDTVKLHKAGDIIPEISTYVKDKRQVDSQPY 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C S +V            A RC     C AQ  E L HF SRDA NI+GLG 
Sbjct: 404 EIPTKCPSCDSELVHLDEE------VALRCINPQ-CPAQLKEGLTHFASRDAMNIDGLGP 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +   FK       +   A ++ L   Q  +      +  FG+ S  NL  +I   RN 
Sbjct: 457 KIIAQLFKK----HMLTDVAGLYELTFDQLMT------LDKFGEKSAGNLLTAIANSRNN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S ER +F LGIRHVGA+ AR +A+ + +                     +  +  +G II
Sbjct: 507 SCERLLFGLGIRHVGAKAARLIAQRFKNIDKVMDAT----------AQEIAEIDTMGMII 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI-----GRHEKNVSSEIENKKLVFTGTLQKIQR 663
           A ++V ++  P++   +  L +               K   S    K+LV TG LQ I R
Sbjct: 557 ADSVVTYFSMPQSKELISQLKQVGVNMDYLGATDEDLKESDSVFNGKRLVLTGKLQHITR 616

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +A  ++   GA VS  +S+KTDI++VG++PGSK +KA+ LG+++ +E +F   +    
Sbjct: 617 PEATRWLENHGAKVSGSVSKKTDIVVVGEDPGSKYDKARNLGIEVWDENRFAEAMADEK 675


>gi|256390514|ref|YP_003112078.1| DNA ligase, NAD-dependent [Catenulispora acidiphila DSM 44928]
 gi|256356740|gb|ACU70237.1| DNA ligase, NAD-dependent [Catenulispora acidiphila DSM 44928]
          Length = 723

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 218/742 (29%), Positives = 345/742 (46%), Gaps = 63/742 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++  +     ++ ++L +EI      YY    P I D+++D   R+ +AI  A P+L   
Sbjct: 1   MDETTAATPAQQHAALAEEIENARYRYYVLDAPTISDADFDVKLRQLEAIEDANPEL--- 57

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ P  K+ G        V H    LSL+  +  E+L+ +  RI +            
Sbjct: 58  RTPDSPTQKVAGAYETEFTSVPHLERMLSLDNAFTAEELQTWADRIEKDLGALP----EL 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEI 184
             E K+DG  I + YEKGK   A  RGDG +GED++   + I TIP+ L+       PE+
Sbjct: 114 LCELKVDGLAINLLYEKGKLTRALTRGDGRTGEDITPNAKTIQTIPQTLTGTDEFPVPEL 173

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +EVRGEVY +   F   N++++A   + YAN RNAA+G LR+ +P     R L+  VHG+
Sbjct: 174 VEVRGEVYFAVQAFDEWNEKILAETGRSYANARNAAAGSLRQKDPRVTAQRPLSMVVHGI 233

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G         Q    + +R  G P ++ V+   T   +  Y +     R  + ++IDG+V
Sbjct: 234 GARKGFTPTSQSHSYEALRAWGLPTSDRVKVVKTLKDVQKYIDYYNKHRHDVEHEIDGVV 293

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVD   +Q +LG  +R+PRW I+ K+  ++ +T+LLDI +Q+GRTG +TP A +EPV +
Sbjct: 294 VKVDALPIQGRLGSTSRAPRWAIAFKYPPEEVTTKLLDIRVQVGRTGRVTPYAVMEPVTV 353

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ + NATLHN           + +   + + +GD V++++AG+VIP++V  + + R  
Sbjct: 354 AGSTVQNATLHN-----------QAIVVKKGLLIGDTVVLRKAGDVIPEIVGAVQDLRDG 402

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             + F  P  CP C +++         +     RC     C  Q  ER+    SR+A +I
Sbjct: 403 SEREFVMPENCPDCGTKLA-----PQKEGDIDLRCPNSQFCLGQIRERIDFMGSRNALDI 457

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS--------- 534
           E LG +      +       +    D+ +L+         +++  G              
Sbjct: 458 EALGYESAVALTQPAAGTAPVHDEGDLLSLKLEDLADLKMLQSKRGADAKPGETELVPYF 517

Query: 535 ----------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578
                              L      + +  L RF+ SL IRHVG   AR LA+ + S+ 
Sbjct: 518 FTKGTPKKPSVPTATTELLLQQLELVKTDRPLWRFLVSLSIRHVGPTAARVLAREFPSFD 577

Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638
             A                L     +G  IA AIVE++    +   +          +  
Sbjct: 578 ALANATE----------EDLKAANGIGPTIATAIVEWFAVDWHRAIIGKWQAAGVVPVVE 627

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
            +      +E   +V TGTL    R  A E +T  GA VS  +S+KT  ++VGDNPG+K 
Sbjct: 628 SQPEGPRPLEGLSVVVTGTLAGFTRDGAAEELTSRGAKVSGSVSKKTSFVVVGDNPGTKY 687

Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720
           +KA  LGVK+++EE F  LL  
Sbjct: 688 DKALSLGVKVLDEEGFKVLLGD 709


>gi|254383201|ref|ZP_04998554.1| DNA ligase [Streptomyces sp. Mg1]
 gi|194342099|gb|EDX23065.1| DNA ligase [Streptomyces sp. Mg1]
          Length = 736

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 212/742 (28%), Positives = 351/742 (47%), Gaps = 61/742 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
               R++ + L +++  H   YY   +P++ D+E+D L R  +A+   +P L     P+ 
Sbjct: 14  PAAVREQHALLAEQVEEHRFRYYVNDQPVVSDAEFDQLLRSLEALEEQYPQL---RTPDS 70

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G        V H    LSL+  ++ E+L  +  R+ R     D +   +  E K
Sbjct: 71  PTQKVAGAYETDFASVQHRERMLSLDNAFDDEELAAWAERVARDANTSDYH---YLCELK 127

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG +GED++  +R I  IP  L+ +  P ++E+RGEV+
Sbjct: 128 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLTGDRIPALVEIRGEVF 187

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                F  LN  ++    KP+ANPRNAA+G LR+ +P    +R L+  VHG+G       
Sbjct: 188 FPMEKFEELNARLVETEGKPFANPRNAAAGSLRQKDPKITASRPLHMVVHGIGAREGFDI 247

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                  + +R  G P     R  ++   +  +       R ++ ++IDG+V K+DE  L
Sbjct: 248 DKLSHAYELLREWGLPTARHNRVVSSLAEVREFITHFGENRHSVEHEIDGVVVKLDEIPL 307

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  AR+PRW I+ K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ +  A
Sbjct: 308 QGRLGSTARAPRWAIAWKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSEVEFA 367

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN++ +K            + + +GD V++++AG+VIP+++  +V+ R    + F  P
Sbjct: 368 TLHNQEVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMP 416

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG---- 487
           + CP C + +         +     RC  G  C AQ  ERL +   R   +IE  G    
Sbjct: 417 AECPECGTPLRPM-----KEGDIDLRCPNGQTCPAQLRERLFYLGGRQCLDIENFGAVAA 471

Query: 488 --------------KQQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTK-----IEN 526
                         + + D F  + +    I+         L +R   +  +       N
Sbjct: 472 AALTNPLEPAEPPLRDEGDLFGLTIEDLLPIKAYVLDGDSGLPKRDPKTGEEKIVTVFAN 531

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             G    +   + ++I   +   L R I  L IRHVG   A +LA+ + S +   Q    
Sbjct: 532 QKGEPKKNALAMLENIAAAKERPLARVINGLSIRHVGPVAAEALAREFRSIERIEQATE- 590

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--S 644
                      L     VG IIA ++ E++    +   +    +                
Sbjct: 591 ---------EELAATDGVGAIIAASLKEWFAVDWHQEILRKWREAGVRMEEEGSGEEEGP 641

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA QL
Sbjct: 642 RPLEGLTVVVTGTLESHTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAVQL 701

Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726
            + I+++  F  LL+Q     R
Sbjct: 702 KLAILDDAGFAVLLEQGPDAAR 723


>gi|227889453|ref|ZP_04007258.1| NAD-dependent DNA ligase [Lactobacillus johnsonii ATCC 33200]
 gi|227849931|gb|EEJ60017.1| NAD-dependent DNA ligase [Lactobacillus johnsonii ATCC 33200]
          Length = 668

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 208/715 (29%), Positives = 362/715 (50%), Gaps = 50/715 (6%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+  +A +++  L +++    D YY    P++ D+ YD   +    +   FPDL  +
Sbjct: 1   MAVLTHSEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEQKFPDLVTA 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +    ++GGE+   L KV H +P LS+  +++ ++L++F  RI +       + + +
Sbjct: 61  ---DSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLVG----HPVAY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y  GK   A+ RG+G  GEDV+A  + I  IP+ L   +    EVR
Sbjct: 114 NVELKIDGLSLSLEYTNGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPEPL--TTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN E    G + +ANPRNAA+G LR+L+     +              
Sbjct: 172 GECYMEKEAFATLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ + +M  LGF  N   R+  +   +  + +E  + R+ L Y IDG+V KVD+
Sbjct: 232 RNITSQHQAIDEMNRLGFHTNQSGRRFESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G ++
Sbjct: 292 LSLQNELGNTVKVPRWEIAYKFPPEEQETVVRNIEWTVGRTGVVTPTAVMDPVKLAGTIV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN DY++            + +R+GD V + +AG++IP++  +++++R  D++P+
Sbjct: 352 SRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLSKRPKDSKPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG 
Sbjct: 401 EIPNVCPSCGETLVHLQDE------VALRCINPM-CPAQIEEGIIHFASRGAMNIMGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +            I   AD++ L   Q         +  F + S+TNL  SI   +  
Sbjct: 454 RIVKQLIDK----GFINDVADLYHLTPDQL------GQLDHFKEKSITNLLSSIENSKQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S E  ++ LGI HVGA+ AR + + Y + +  +Q               L  +  +G+ I
Sbjct: 504 SAELLLYGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIGETI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+++  ++  P     ++ L              E+   +  + K +V TG L    R +
Sbjct: 554 AESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSAFTRSE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +++
Sbjct: 614 FTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKIEK 668


>gi|329667842|gb|AEB93790.1| NAD-dependent DNA ligase [Lactobacillus johnsonii DPC 6026]
          Length = 668

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 210/715 (29%), Positives = 362/715 (50%), Gaps = 50/715 (6%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+  +A +++  L +++    D YY    P++ D+ YD   +    +   FPDL  +
Sbjct: 1   MAVLTHNEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEEQFPDLVTA 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N    ++GGE+   L KV H +P LS+  +++ E+L++F  RI +       + + +
Sbjct: 61  ---NSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKEELKEFDERITKLVG----HPVAY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y  GK   A+ RG+G  GEDV+A  + I  IP+ L   +    EVR
Sbjct: 114 NVELKIDGLSLSLEYTNGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPEPL--TTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN E    G + +ANPRNAA+G LR+L+     +              
Sbjct: 172 GECYMEKEAFATLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ + +M  LGF  N   R+  +   +  + +E  + R+ L Y IDG+V KVD+
Sbjct: 232 RNITSQHQAIDEMNRLGFHTNQSGRRFESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G ++
Sbjct: 292 LSLQNELGNTVKVPRWEIAYKFPPEEQETVVRNIEWTVGRTGVVTPTAVMDPVKLAGTIV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN DY++            + +R+GD V + +AG++IP++  +++++R  D++P+
Sbjct: 352 SRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLSKRPKDSKPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG 
Sbjct: 401 EIPNVCPSCGETLVHLQDE------VALRCINPM-CPAQIEEGIIHFASRGAMNIMGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +            I   AD++ L   Q         +  F + S+TNL  SI   +  
Sbjct: 454 RIVKQLIDK----GFINDVADLYHLTPDQL------GQLDHFKEKSITNLLSSIENSKQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S E  ++ LGI HVGA+ AR + + Y + +  +Q               L  +  +G+ I
Sbjct: 504 SAELLLYGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIGETI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+++  ++  P     ++ L              E+   +  + K +V TG L    R +
Sbjct: 554 AESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSAFTRSE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +++
Sbjct: 614 FTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKIEK 668


>gi|194307280|gb|ACF42137.1| DNA ligase [Mycobacterium lepromatosis]
          Length = 686

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 224/711 (31%), Positives = 342/711 (48%), Gaps = 43/711 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  ++   L +E+  H   YY    PII D+E+DAL  R   +    P+L     P+ P 
Sbjct: 4   ELLRQWRKLAEEVREHQFRYYVRDAPIISDAEFDALLGRLTVLEEQHPEL---RTPDSPT 60

Query: 76  NKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             IGG           H    LSL+   + ++L  +ITRI R           +  E K+
Sbjct: 61  QLIGGAGFTTDFVATEHLERMLSLDNASSEDELDAWITRIRREIGNDAH----YLCELKV 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGE 190
           DG  +++ Y  G    A  RGDGH+GEDV+   R I  +P  L       IPE++EVRGE
Sbjct: 117 DGVALSLVYRNGLLNRATTRGDGHTGEDVTLNARTIEDVPERLTVSDIYPIPEVLEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V+    DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    HGLG     
Sbjct: 177 VFFRVTDFQALNTSLVEEGKNPFANPRNSAAGSLRQKDPAVTAHRTLRMICHGLGHIEGF 236

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++    +R  G PV++     N   G+          R  + ++IDG+V K+DE 
Sbjct: 237 RPATQHQAYLALRAWGLPVSDHTTLVNDIAGVQRRIAYWAEHRHEVDHEIDGIVVKIDEL 296

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ + 
Sbjct: 297 ALQRRLGSTSRAPRWAIAYKYLPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVG 356

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN   +K            + + +GD V++++AGEVIP++V  +V+ R      F 
Sbjct: 357 QATLHNASEVKR-----------KGVLIGDTVVIRKAGEVIPEIVGPVVDLRDGSESEFV 405

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +  +      +     RC    +C  Q  ER+ H  SR   +I+GLG +
Sbjct: 406 MPTTCPECGTTLAPE-----KEGDTDIRCPNARSCPGQLRERVFHVASRSVLDIQGLGYE 460

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                      A  I    D+FTL       T    N  G    +   L  +++K +   
Sbjct: 461 AGVALL----AAQVITSEGDLFTLTEDDLLRTELFRNKAGKLSANGKRLLVNVDKAKTAP 516

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L IRHVG   AR+LA  + S                     L  V  VG  IA
Sbjct: 517 LWRVLVALSIRHVGPTAARALAAEFGSIDAILAA----------SPEQLAAVEGVGAAIA 566

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            A+ E++    +   V+         +   + +V    E   +V TG+L    R  A+E 
Sbjct: 567 AAVTEWFAVDWHRAIVDKWRAAGVRMVDERDTSVPPTCEGLTIVVTGSLAGFSRDDAKEA 626

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +   G  V+  +S+K   ++VGD PGSK +KA +LGV I++E+ F  LL+Q
Sbjct: 627 IVARGGKVAGAVSKKIAYVVVGDLPGSKYDKAIELGVPILDEDGFRLLLEQ 677


>gi|320450863|ref|YP_004202959.1| DNA ligase, NAD-dependent [Thermus scotoductus SA-01]
 gi|320151032|gb|ADW22410.1| DNA ligase, NAD-dependent [Thermus scotoductus SA-01]
          Length = 674

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 241/712 (33%), Positives = 380/712 (53%), Gaps = 52/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E+ARK ++ L   I YH+  YY    P I D+EYD L R    +   FP+L     P
Sbjct: 1   MTLEEARKRINELRDLIRYHNYRYYVLDAPEISDAEYDRLLRELKELEERFPELK---SP 57

Query: 72  NGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G +   +    + H     SL+  + +E++R F  RI R   +K      +T+
Sbjct: 58  DSPTEQVGAKPLEATFRPIRHPTRMYSLDNAFTLEEVRTFEERIERALGRK--GPFVYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  V+ A RGDG +GE+V+  +  IPTIPR L    PE +EVRGE
Sbjct: 116 EHKVDGLSVNLYYEEGILVWGATRGDGETGEEVTQNLLTIPTIPRRLKGV-PERLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+    FL LN+E+   G K + NPRNAA+G LR+ +P     R L    + LG   E 
Sbjct: 175 VYMPIEAFLRLNEELEEKGEKIFKNPRNAAAGSLRQKDPRITARRGLRATFYALGLGLEE 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K Q ++L  +R  GFPV +G  +A    G+   Y      R +LP++ DG+V K+DE
Sbjct: 235 SGLKTQLDLLHWLREKGFPVEHGFARAEGAEGVERIYQGWLKERRSLPFEADGVVVKLDE 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SL ++LG  AR+PR+ I++KF  ++  TRLL +  Q+GRTG +TPV  LEPV I G+ +
Sbjct: 295 LSLWRELGYTARAPRFAIAYKFPAEEKETRLLQVVFQVGRTGRVTPVGILEPVFIEGSEV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  TLHNE YI+ L           D+R+GD VLV +AG VIP+V+ ++  +R  + +P 
Sbjct: 355 SRVTLHNESYIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKEKRTGEERPI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P  CP C  R+V++           HRC   L C A++ E ++H+ SR A +I GLG+
Sbjct: 404 RWPETCPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIGGLGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   +       ++  AD++ L+            +   G  S  NL   I + R+ 
Sbjct: 455 KLIEKLLEK----GLVKDVADLYRLKEEDLVG------LERMGKKSAGNLLRQIEESRSR 504

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            LER +++LG+  VG  +AR+LA ++ +     +     +           +V  VG++ 
Sbjct: 505 GLERLLYALGLPGVGEVLARNLAAHFGTMDRLLEASLEELL----------QVEEVGELT 554

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+ I E  Q+P     +  L +       +  +     ++    V TG L +  R + + 
Sbjct: 555 ARGIYETLQDPAFRDLIRRLKEAGVEMEAK--ERGEEALKGLTFVITGELSR-PREEVKA 611

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + +LGA V+  +SRKT  ++VG+ PGSKLEKA+ LGV  + EE+   L+++
Sbjct: 612 LLRRLGAKVTDSVSRKTSYLVVGEAPGSKLEKARALGVPTLTEEELYRLIEE 663


>gi|296116447|ref|ZP_06835061.1| putative DNA ligase [Gluconacetobacter hansenii ATCC 23769]
 gi|295977040|gb|EFG83804.1| putative DNA ligase [Gluconacetobacter hansenii ATCC 23769]
          Length = 709

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 278/710 (39%), Positives = 404/710 (56%), Gaps = 33/710 (4%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            +S  QA  EL+ L   I+  D  Y+Q   PI+ D+ YDAL+RR   +  A P   R   
Sbjct: 23  DMSASQAASELALLADVIAQLDRAYHQDDAPIVTDAVYDALRRRNSELEQAHP---RERR 79

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIFF 128
            + P  ++G   + +  +  H  P LSL+ +++ E+   FI+R  RF    D     + F
Sbjct: 80  DDSPDTRVGAAPSGAFRRHRHLTPMLSLDNVFSREEFEGFISRAARFLGLDDAQATQLDF 139

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             EPKIDG  I++ YE   FV    RGDG  GEDV+A +R +  +P+ L    P++IE+R
Sbjct: 140 VAEPKIDGLSISLTYENRHFVRGTTRGDGTEGEDVTANLRTLRNMPQQLHGPAPDLIEIR 199

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEV+++K+DFL LN   +A G+KP+ANPRNAA+G LR+L+      R L+ F + +G  S
Sbjct: 200 GEVFLAKSDFLTLNAAQVAAGQKPFANPRNAAAGSLRQLDAEITRQRPLSLFAYAVGYCS 259

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              A      L+++   GF V+    +        ++   +   RS L YDIDG+VYK++
Sbjct: 260 APVADTHDLYLRQLGEWGFAVSPLCTRVANEAEAEAFMERIARERSALDYDIDGVVYKIN 319

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E +LQ++LG   R+PRW ++ KFA +QA TRL  IDIQ+GRTG LTPVA LEPVN+GG +
Sbjct: 320 ERALQERLGFAGRAPRWAVAWKFAAEQAITRLTKIDIQVGRTGALTPVAILEPVNVGGVI 379

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +T A+LHNED I             +D++ GD V ++RAG+VIP+V+D+++  R     P
Sbjct: 380 VTRASLHNEDEI-----------VRKDVQEGDLVRIQRAGDVIPQVLDVVLP-RDHSPHP 427

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP+C +   R             RC+GGL C AQ +ERL HFVSRDAF+IEGLG
Sbjct: 428 FVFPHVCPVCHAHAERPEGE------VVWRCSGGLTCPAQLVERLIHFVSRDAFDIEGLG 481

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +  F         +  PADIF L   ++     I    G+G +S  NL ++I  RR 
Sbjct: 482 DRTIAEFHAD----GLLGTPADIFHLPTHEE----AIAVRPGWGTLSARNLMNAIAARRT 533

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           ISL RFI++LGIR +G   AR LA++Y SY N+ Q++       +D+ L L  +  +G  
Sbjct: 534 ISLSRFIYALGIRRIGINTARLLARHYGSYDNWHQQMLRATTVGSDERLELGSITGIGTA 593

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IA  +V F+    N   +E L   V  +I   E   + E+  K +VFTGTL  + R +A+
Sbjct: 594 IADELVAFFIEAHNRQTLEDL-THVLEAITDEEMLAAGELSGKVIVFTGTLTTMSRPEAR 652

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
               ++GA VS  +SRKTDI+++G+  GSK  KA +L +  ++E  +  L
Sbjct: 653 AIAERMGARVSDSVSRKTDIVVLGEKAGSKARKAAELNLHTVDEAGWRSL 702


>gi|81611354|sp|Q6A7A2|DNLJ_PROAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|50840696|gb|AAT83363.1| DNA ligase [Propionibacterium acnes KPA171202]
          Length = 772

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 212/748 (28%), Positives = 340/748 (45%), Gaps = 78/748 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P
Sbjct: 50  AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 106

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ ++  ++L +++ R+     K  +    F  E K
Sbjct: 107 TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 162

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           IDG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L+ +     +EVRGEV+
Sbjct: 163 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 222

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 223 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 282

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+ SL
Sbjct: 283 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 342

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 343 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 402

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 403 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 451

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 452 DHCPSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 506

Query: 492 DFFFKSED----------------------PAFSIRIPADIFTLQRRQQTSTTKIENILG 529
                 E+                       A    +  D   L   +     K+    G
Sbjct: 507 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLD--DLAEIKVWRRRKVNGGPG 564

Query: 530 FGDVSVT------------------NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
              +                      ++D + K ++  L R + +L IRHVG   AR+LA
Sbjct: 565 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 624

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
            ++ S +   +               L  V  VG+IIA+++  +++   +   +      
Sbjct: 625 THFGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAA 674

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                   ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG
Sbjct: 675 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 734

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +N GSK  KA+ LG  I++E  F +LL+
Sbjct: 735 ENAGSKETKARDLGRPILDEAGFRYLLE 762


>gi|306833158|ref|ZP_07466288.1| NAD-dependent DNA ligase LigA [Streptococcus bovis ATCC 700338]
 gi|304424732|gb|EFM27868.1| NAD-dependent DNA ligase LigA [Streptococcus bovis ATCC 700338]
          Length = 652

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 223/701 (31%), Positives = 354/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L  E++ +   YY   +P + DSEYD L R    +  A P+L     PN P  +
Sbjct: 2   KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRVK-----AEFPNASYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP    L  P  I VRGE Y+ K  
Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHK--LAQPLNITVRGEAYLPKTS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N+E    G+  +ANPRNAA+G LR+LN T +    N       + +      Q ++
Sbjct: 172 FDKINEERRDSGQTEFANPRNAAAGTLRQLN-TVVVAKRNLATFLYQEVASTSMTTQNDV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+++   GF VN      ++   I  +  E+ + R  LPYDIDG+V KV+  ++Q++LG 
Sbjct: 231 LEELSRYGFSVNPRRITTSSMADIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++ ++R     P   P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKR-GKQVPMPIPENCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC   L C +Q  ERL HF SRDA NI GLG   +   FK+
Sbjct: 399 GSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKLFKA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           E     +   ADI+ L      S      + GF + S   LY++I   +  S ++ +F L
Sbjct: 452 E----LVHDVADIYQLTVEDLLS------LDGFKEKSAEKLYNAIQVSKENSADKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA+ +R L + + +                 D  S+  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGAKASRQLLEVFETIDQLVAA----------DADSIASIDGLGTVIAKSLRSYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  +  L            + +  +++    +V TG L+++ R++A+E +  LGA 
Sbjct: 552 KEEATELLHELENAGVNFAYLGKKVSKDAQLAGLTVVLTGKLERLTRNEAKEKLQDLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTDI++ G + GSKL KAQ LG+ + +E     L
Sbjct: 612 VTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDEAWLESL 652


>gi|161621794|ref|YP_056321.2| NAD-dependent DNA ligase LigA [Propionibacterium acnes KPA171202]
 gi|315106904|gb|EFT78880.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL030PA1]
          Length = 740

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 212/748 (28%), Positives = 340/748 (45%), Gaps = 78/748 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P
Sbjct: 18  AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 74

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ ++  ++L +++ R+     K  +    F  E K
Sbjct: 75  TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 130

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           IDG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L+ +     +EVRGEV+
Sbjct: 131 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 190

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 191 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 250

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+ SL
Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 310

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 370

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 371 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 420 DHCPSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474

Query: 492 DFFFKSED----------------------PAFSIRIPADIFTLQRRQQTSTTKIENILG 529
                 E+                       A    +  D   L   +     K+    G
Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLD--DLAEIKVWRRRKVNGGPG 532

Query: 530 FGDVSVT------------------NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
              +                      ++D + K ++  L R + +L IRHVG   AR+LA
Sbjct: 533 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 592

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
            ++ S +   +               L  V  VG+IIA+++  +++   +   +      
Sbjct: 593 THFGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAA 642

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                   ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG
Sbjct: 643 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 702

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +N GSK  KA+ LG  I++E  F +LL+
Sbjct: 703 ENAGSKETKARDLGRPILDEAGFRYLLE 730


>gi|289426325|ref|ZP_06428068.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK187]
 gi|295131143|ref|YP_003581806.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK137]
 gi|289153053|gb|EFD01771.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK187]
 gi|291375741|gb|ADD99595.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK137]
 gi|332676019|gb|AEE72835.1| DNA ligase [Propionibacterium acnes 266]
          Length = 753

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 211/746 (28%), Positives = 340/746 (45%), Gaps = 74/746 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P
Sbjct: 31  AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 87

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ ++  ++L +++ R+     K  +    F  E K
Sbjct: 88  TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 143

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           IDG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L+ +     +EVRGEV+
Sbjct: 144 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 203

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 204 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 263

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+ SL
Sbjct: 264 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 323

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 324 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 383

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 384 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 432

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 433 DHCPSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 487

Query: 492 DFFFKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIE 525
                 E+                       A    +  D        +RR+        
Sbjct: 488 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 547

Query: 526 NILGFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
            +  +                   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 548 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 607

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +               L  V  VG+IIA+++  +++   +   +        
Sbjct: 608 FGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 657

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 658 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 717

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GSK  KA+ LG  I++E  F +LL+
Sbjct: 718 AGSKETKARDLGRPILDEAGFRYLLE 743


>gi|314957538|gb|EFT01641.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA1]
          Length = 724

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 211/746 (28%), Positives = 340/746 (45%), Gaps = 74/746 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P
Sbjct: 2   AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 58

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ ++  ++L +++ R+     K  +    F  E K
Sbjct: 59  TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           IDG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L+ +     +EVRGEV+
Sbjct: 115 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 174

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 175 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 234

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+ SL
Sbjct: 235 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 294

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 295 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 354

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 355 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 403

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 404 DHCPSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 458

Query: 492 DFFFKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIE 525
                 E+                       A    +  D        +RR+        
Sbjct: 459 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 518

Query: 526 NILGFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
            +  +                   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 519 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 578

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +               L  V  VG+IIA+++  +++   +   +        
Sbjct: 579 FGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 628

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 629 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 688

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GSK  KA+ LG  I++E  F +LL+
Sbjct: 689 AGSKETKARDLGRPILDEAGFRYLLE 714


>gi|313763487|gb|EFS34851.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL013PA1]
 gi|313773641|gb|EFS39607.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL074PA1]
 gi|313801268|gb|EFS42519.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA2]
 gi|313808052|gb|EFS46533.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA2]
 gi|313811476|gb|EFS49190.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL083PA1]
 gi|313813500|gb|EFS51214.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL025PA1]
 gi|313816668|gb|EFS54382.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL059PA1]
 gi|313819621|gb|EFS57335.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL046PA2]
 gi|313826033|gb|EFS63747.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL063PA1]
 gi|313829503|gb|EFS67217.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL063PA2]
 gi|313831217|gb|EFS68931.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL007PA1]
 gi|313840009|gb|EFS77723.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL086PA1]
 gi|314914784|gb|EFS78615.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA4]
 gi|314920694|gb|EFS84525.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA3]
 gi|314930573|gb|EFS94404.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL067PA1]
 gi|314954471|gb|EFS98877.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL027PA1]
 gi|314961961|gb|EFT06062.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA2]
 gi|314963768|gb|EFT07868.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL082PA1]
 gi|314968405|gb|EFT12503.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA1]
 gi|314974093|gb|EFT18189.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL053PA1]
 gi|314976617|gb|EFT20712.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL045PA1]
 gi|314978931|gb|EFT23025.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL072PA2]
 gi|314984280|gb|EFT28372.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA1]
 gi|314986627|gb|EFT30719.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA2]
 gi|314990983|gb|EFT35074.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA3]
 gi|315079616|gb|EFT51609.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL053PA2]
 gi|315081153|gb|EFT53129.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL078PA1]
 gi|315087038|gb|EFT59014.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA3]
 gi|315089213|gb|EFT61189.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL072PA1]
 gi|315095437|gb|EFT67413.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL038PA1]
 gi|315099114|gb|EFT71090.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL059PA2]
 gi|315100402|gb|EFT72378.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL046PA1]
 gi|315109094|gb|EFT81070.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL030PA2]
 gi|327328505|gb|EGE70267.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL096PA2]
 gi|327329632|gb|EGE71388.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL096PA3]
 gi|327334143|gb|EGE75857.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL097PA1]
 gi|327444292|gb|EGE90946.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL043PA2]
 gi|327444828|gb|EGE91482.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL043PA1]
 gi|327446317|gb|EGE92971.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL013PA2]
 gi|327452096|gb|EGE98750.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL092PA1]
 gi|327454866|gb|EGF01521.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA3]
 gi|327457850|gb|EGF04505.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL083PA2]
 gi|328752459|gb|EGF66075.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL020PA1]
 gi|328755302|gb|EGF68918.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA1]
 gi|328758217|gb|EGF71833.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL025PA2]
 gi|328759940|gb|EGF73524.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL099PA1]
          Length = 740

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 211/746 (28%), Positives = 340/746 (45%), Gaps = 74/746 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P
Sbjct: 18  AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 74

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ ++  ++L +++ R+     K  +    F  E K
Sbjct: 75  TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 130

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           IDG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L+ +     +EVRGEV+
Sbjct: 131 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 190

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 191 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 250

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+ SL
Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 310

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 370

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 371 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 420 DHCPSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474

Query: 492 DFFFKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIE 525
                 E+                       A    +  D        +RR+        
Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 534

Query: 526 NILGFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
            +  +                   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 535 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +               L  V  VG+IIA+++  +++   +   +        
Sbjct: 595 FGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GSK  KA+ LG  I++E  F +LL+
Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLE 730


>gi|313834239|gb|EFS71953.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL056PA1]
 gi|314924752|gb|EFS88583.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA3]
          Length = 740

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 211/746 (28%), Positives = 340/746 (45%), Gaps = 74/746 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P
Sbjct: 18  AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 74

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ ++  ++L +++ R+     K  +    F  E K
Sbjct: 75  TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 130

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           IDG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L+ +     +EVRGEV+
Sbjct: 131 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 190

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 191 FPVADFTDLNAALIEAGKTPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 250

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+ SL
Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 310

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 370

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 371 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 420 DHCPSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474

Query: 492 DFFFKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIE 525
                 E+                       A    +  D        +RR+        
Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 534

Query: 526 NILGFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
            +  +                   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 535 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +               L  V  VG+IIA+++  +++   +   +        
Sbjct: 595 FGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GSK  KA+ LG  I++E  F +LL+
Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLE 730


>gi|218961271|ref|YP_001741046.1| DNA ligase, NAD-dependent [Candidatus Cloacamonas acidaminovorans]
 gi|167729928|emb|CAO80840.1| DNA ligase, NAD-dependent [Candidatus Cloacamonas acidaminovorans]
          Length = 667

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 232/716 (32%), Positives = 367/716 (51%), Gaps = 57/716 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++  + +  +  L  EI +H+  YY  +KP I D EYD L +    +   + + A  E  
Sbjct: 1   MNKNELKARIDRLRAEIEHHNRLYYTLAKPEISDYEYDMLVKELQELEAQYAEGAVEE-- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  K+G ++      + H +   SLE  +++E++  FI R           +  +  E
Sbjct: 59  -SPTQKVGSDLTPGAKTIPHKVRMASLENAYSLEEVLAFINRTNNDLG----YASEYCAE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I + YE G F+YA  RGDG  GEDV+   R +P +P    ++    IE+RGE+
Sbjct: 114 LKIDGFSINLYYENGNFIYATTRGDGLEGEDVTENFRLLPDVPFT--IDYKGAIEIRGEI 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT---- 246
           YI   DFLALN+       K +ANPRNAA+G ++  +  +  +R+L    + LG      
Sbjct: 172 YIPVQDFLALNEFRRENELKTFANPRNAAAGSIKLKSREEVKSRHLKALFYALGYYETPL 231

Query: 247 --SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                    Q  +L  +  LGFP +        +     +  +M+  R T+PYDIDG+V 
Sbjct: 232 QYKNEIIDKQTRLLDFLDELGFPTSKRT-LCKHYQEAEKFCLQMEQERYTIPYDIDGIVI 290

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+    QK+LG  A+SP+W I++KF  ++  T L  +  Q+GRTG +TPVA L+PV I 
Sbjct: 291 KVNSLEDQKKLGWTAKSPKWAIAYKFKPEEKETVLESVSFQVGRTGAVTPVANLKPVFIS 350

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ +++ATLHN D IK L           D+  GD VLV ++GE+IPK++ + V++R  +
Sbjct: 351 GSTVSHATLHNADEIKRL-----------DLHYGDTVLVVKSGEIIPKILSVNVSKRPVN 399

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+P  FP+ CP+C + + RD +                 C AQ   +L+HF SR+A +I 
Sbjct: 400 AKPVIFPATCPVCNAPLQRDEDGS-------INYCPNANCPAQIQRKLEHFASREAMDIY 452

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG   +    ++      I+   DI+ L         KI  +   G  S  NL  +I  
Sbjct: 453 GLGSSLIARLIET----GQIKWIPDIYHL------DYNKIAEMERMGKKSADNLQKAIEA 502

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  + +R +F+LGIRH+G+  AR+LA+++ +                     L+ VP +
Sbjct: 503 SKTKNFDRVLFALGIRHIGSITARTLAQHFKNIDALIMAKE----------EELLSVPDI 552

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G IIA++I+ F+    N   +++L K V           S+ +  K  + TGTL    R 
Sbjct: 553 GSIIARSIIGFFSQKSNRELIDSLRK-VGLQFTYISPQSSAILAGKTFLITGTLPNYSRK 611

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719
             +  +T+ G  + + +S++ + +IVG+NPGSKL+KA QLG VKI++E + L +LQ
Sbjct: 612 DMETLITEHGGKILSGVSKQLNYLIVGENPGSKLDKAHQLGTVKIISEAELLDMLQ 667


>gi|313822055|gb|EFS59769.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA1]
 gi|313823710|gb|EFS61424.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA2]
          Length = 740

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 210/746 (28%), Positives = 339/746 (45%), Gaps = 74/746 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P
Sbjct: 18  AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 74

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ ++  ++L +++ R+     K  +    F  E K
Sbjct: 75  TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 130

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           IDG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L+ +     +EVRGEV+
Sbjct: 131 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 190

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 191 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 250

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+  L
Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVFL 310

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 370

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 371 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 420 DHCPSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474

Query: 492 DFFFKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIE 525
                 E+                       A    +  D        +RR+        
Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 534

Query: 526 NILGFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
            +  +                   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 535 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +               L  V  VG+IIA+++  +++   +   +        
Sbjct: 595 FGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GSK  KA+ LG  I++E  F +LL+
Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLE 730


>gi|254556107|ref|YP_003062524.1| DNA ligase (NAD+) [Lactobacillus plantarum JDM1]
 gi|300766626|ref|ZP_07076543.1| NAD-dependent DNA ligase LigA [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308180104|ref|YP_003924232.1| DNA ligase (NAD+) [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|254045034|gb|ACT61827.1| DNA ligase (NAD+) [Lactobacillus plantarum JDM1]
 gi|300495726|gb|EFK30877.1| NAD-dependent DNA ligase LigA [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308045595|gb|ADN98138.1| DNA ligase (NAD+) [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 679

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 229/714 (32%), Positives = 375/714 (52%), Gaps = 53/714 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
              +++EQA  E ++L Q ++     YY    P + DS YD    R   +   FP L   
Sbjct: 5   PNTMTVEQAADEAAALRQTLNEWRRQYYDEDAPNVEDSVYDQKYERLVELEQTFPQLV-- 62

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ P   +GG +     KVTH IP LSL  +++  +L++F+ R     ++   + + +
Sbjct: 63  -TPDSPTQLVGGTVKAGFDKVTHEIPMLSLGDVFSQAELQEFVDR----LEQNVGHPVDY 117

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E KIDG  +++RYE G  V  + RG+G  GED++A I+ I +IP    L  P  I+VR
Sbjct: 118 NCELKIDGLALSLRYEDGVLVQGSTRGNGTVGEDITANIKTIKSIP--QRLTRPLTIDVR 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247
           GE Y+ K  F ALN+   A G   +ANPRNAA+G LR+L+      R L+ F++ +    
Sbjct: 176 GECYMPKAAFAALNERREAAGEPVFANPRNAAAGTLRQLDSRVVAERQLSTFMYNIADYE 235

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            + A+ Q +ML +   LGF +N   + A++   + SY +  ++ R  L Y IDG+V K +
Sbjct: 236 PLTARTQSDMLTEFADLGFAINPDFKVAHSMADVFSYIDHYQNERPELAYGIDGIVIKAN 295

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ+ LG   + PRW I+ KF   +  T L D++  +GRTG++TP A +EPV + G  
Sbjct: 296 PLPLQRSLGATVKVPRWAIAFKFPPDEQPTLLKDVEWTVGRTGVVTPTAVMEPVQLAGTT 355

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN DY+             +D+R+GD VL+ +AG++IP++  + + +R  DAQP
Sbjct: 356 VARASLHNPDYV-----------AAKDVRIGDTVLLHKAGDIIPEISSVDLAKRPKDAQP 404

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP C + +V   +        A RC     C AQ  E L HF SR+A NI+GLG
Sbjct: 405 LVIPTTCPSCGAPLVHLEDE------VALRCINPK-CPAQVQEGLVHFASRNAMNIDGLG 457

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +   + +      +   A ++ L + Q  +      +    D S   L  +I++ R+
Sbjct: 458 PRIIAQLYANR----LVSDVAGLYRLTKAQLLT------LDKIKDKSAEKLLTAIDRSRD 507

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SLER +F LGIRHVGA++AR +A+++ + +                   +  +  +GD+
Sbjct: 508 NSLERLLFGLGIRHVGAKVARLIAQHFGTIEALMAASQ----------EEIAAIDSMGDV 557

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQ 662
           IA A+V+++++      +  L      +  +       ++ +S    K++V TG L+   
Sbjct: 558 IANAVVQYFESDEVHTLIRELQAVNVNTTYQGPSATVAEDSNSWFAGKRVVLTGKLESFT 617

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           R  A +++   GA V+  +S+KTD++I G + GSKL+KAQQL + + +E +F  
Sbjct: 618 RPDATQWLQAHGATVTGSVSKKTDLVIAGSDAGSKLQKAQQLDITVWDEARFSE 671


>gi|171779630|ref|ZP_02920586.1| hypothetical protein STRINF_01467 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281732|gb|EDT47166.1| hypothetical protein STRINF_01467 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 652

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 219/701 (31%), Positives = 355/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L  E++ +   YY   +P + DSEYD L R    +  A PDL     P+ P   
Sbjct: 2   KERIQKLVDELNQYRKEYYTQDQPTVSDSEYDKLYRELVELEKANPDLIL---PDSPTQA 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGLILDGFEKYQHETPLYSLQDAFSREELDDFDRRVK-----AEFPNASYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++ Y  G     A RGDG  GE+++  ++ I  IP  L   +   I VRGE Y+ +  
Sbjct: 114 SVSLVYVDGVLQVGATRGDGSIGENITENVKRIKDIPHKLEEPL--TITVRGEAYLPRES 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N+E    G+  +ANPRNAA+G LR+LN   +    N       + +      Q ++
Sbjct: 172 FDKINEERRESGQSEFANPRNAAAGTLRQLNTAVV-AKRNLATFFYQEVASTSMTTQNDV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+++   GF VN      ++   I ++  E+ + R +LPYDIDG+V KV+  ++Q++LG 
Sbjct: 231 LEELSRYGFSVNPRRITTSSMEDIWAFIQEVAAERDSLPYDIDGIVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++ ++R+    P   P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVESKRNK-QVPMPIPETCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC   L C +Q  ERL HF SRDA NI GLG   +   F  
Sbjct: 399 GSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L      +      + GF + S   LY++I   +  S E+ +F L
Sbjct: 450 --TADLVHDVADIYRLSVEDLLT------LDGFKEKSAEKLYNAIQASKANSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA+ +R L + + S +N              D  ++  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGAKASRQLLEVFESIENLVAA----------DEEAIANIDGLGTVIAKSLRSYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  +  L            + +  +++    +V TG LQ++ R++A+E +  LGA 
Sbjct: 552 KKEAEELLAELKNAGVNFAYLGKKVSKDAQLAGLTVVLTGKLQRLTRNEAKEKLQDLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTDI++ G + GSKL KAQ LG+ + +E     L
Sbjct: 612 VTGSVSKKTDIVVAGADAGSKLTKAQALGIDVRDEAWLESL 652


>gi|220906114|ref|YP_002481425.1| NAD-dependent DNA ligase LigA [Cyanothece sp. PCC 7425]
 gi|254781305|sp|B8HV17|DNLJ_CYAP4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219862725|gb|ACL43064.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7425]
          Length = 738

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 219/747 (29%), Positives = 348/747 (46%), Gaps = 96/747 (12%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R+ +  L Q +      YY    PI+ D  YD L R    +   +P+L     P+ P 
Sbjct: 19  EIRQRVLELRQLVQRASYAYYVLDAPILEDVVYDQLYRELQDLETQYPELL---TPDSPT 75

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-----IFFTL 130
            ++G +       V H IP  SLE  + + D++ +  R  R  Q   + S       +  
Sbjct: 76  QRVGEQPATQFVSVQHRIPLYSLENAFAVADMQAWQDRWQRQGQAIGEQSATLRSPEYVC 135

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRG 189
           E KIDG+ + + YE G  V  A RGDG  GED++A +R I +IP  L   + P I+EVRG
Sbjct: 136 ELKIDGSALALTYENGVLVRGATRGDGVYGEDITANVRTIRSIPLRLDWPDPPPIVEVRG 195

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT-- 246
           E ++  + F  LN E    G   +ANPRNAA+G LR+L+      R L+FF + L     
Sbjct: 196 EAFLPLDVFHRLNQEREQAGESLFANPRNAAAGTLRQLDARIVAKRRLDFFAYTLHLPLA 255

Query: 247 ------------------------------------------SEIFAKGQYEMLQKMRCL 264
                                                     +    + Q++ L+ ++ +
Sbjct: 256 SARSATQPAAAQQLDLLAVAQSDPAVAAQQLDLSSASQAESVTTHLPQTQWQSLELLQQI 315

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           GF VN   +   T   +  YY+     R  LPY  DG+V K++   LQ+ LG   + PRW
Sbjct: 316 GFRVNPHRQLCPTLADVRQYYDHWNHGRLDLPYMTDGVVVKLNSLRLQEHLGFTQKFPRW 375

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
            I+ K+  +QA T +L+I + +GRTG LTPVA L PV + G  ++ ATLHN D +  L  
Sbjct: 376 AIAWKYEPEQAVTEVLNISVNVGRTGALTPVAELRPVQLAGTTVSRATLHNRDRLAEL-- 433

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                    D+ +GD+V++ +AGE+IP+++ +    R  DA+P+  P+ CP C   VV+ 
Sbjct: 434 ---------DLHIGDKVVIHKAGEIIPEILQVFPELRPADARPYQLPTHCPECGQPVVQP 484

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
           ++       A  RC    +C A     + H+V RDA +I+G+G++ +            +
Sbjct: 485 VDE------AVTRCLNV-SCPAIVRGAIVHWVGRDAMDIDGVGEKLVRQLVDR----GLV 533

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
              AD++ L   Q  +      +   G+     +  +I K ++    R ++ LGIRHVG+
Sbjct: 534 NSVADLYRLTVAQLLT------LERMGNKLAEKVVAAIAKSQSRPWSRVLYGLGIRHVGS 587

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             A+ L   + S +                   +  V  +G  IAQ+IV+++Q P N   
Sbjct: 588 VNAQVLTTAFPSVERLMAA----------SAEDIEAVHGIGPEIAQSIVQWFQTPANHSL 637

Query: 625 VEALLKEVSP----SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
           +E L          ++      +   +  K  V TGTL  + R +A+  + Q G  V+  
Sbjct: 638 IEQLSAAGVQLAQDTVAVPPSQLPQPLAGKTFVLTGTLPTLSRDEARSMIGQAGGKVTDS 697

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVK 707
           +S+KTD ++VG + GSKL+KA QLG+ 
Sbjct: 698 VSKKTDFLVVGADAGSKLDKAGQLGIP 724


>gi|330685564|gb|EGG97210.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU121]
          Length = 668

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 242/716 (33%), Positives = 374/716 (52%), Gaps = 53/716 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + Q +  +  L   ++ +   YY    P + DSEYD L      I    P+      P+ 
Sbjct: 1   MSQLQNRVDELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIHIEEEHPEFK---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDLRKF  RI     K     + +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRENIGK-----VEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  +   +    EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--FEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   ++  A 
Sbjct: 171 PRKSFMNLNEEKEKNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSINDFTDFEAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   L ++  LGF  N+   + +   G++ Y  +  + R TLPYDIDG+V KV++   Q
Sbjct: 231 TQSGALDELDQLGFKTNHERERVSDIDGVLKYIEKWTAERETLPYDIDGIVIKVNDLEQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I++ R  DA+ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVKSIIDRRPEDAETYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLIEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++++     I+  ADIF            +  +   G   V NL ++I + ++ SLE 
Sbjct: 453 QLYEND----LIKDVADIF------YLEEEDLLPLERMGSKKVENLLEAIKQAKSQSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + +R LA+ Y +                     LI +  +G  +AQ++
Sbjct: 503 LLFGLGIRHLGVKASRVLAEKYETMDRLLTVTE----------EELIAIHDIGGKLAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SE-IENKKLVFTGTLQKIQRHKAQE 668
           V + +N      ++ L  +      +  K            K +V TG L+++ R++A +
Sbjct: 553 VTYLENDDIRALIQKLKDKDVNMTYKGVKTTEIEGHPDFSGKTIVLTGKLEQMTRNEASQ 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           ++   GA V+  +++ TDI+I G + GSKL KA++ G +I  EE+F     + N  
Sbjct: 613 WLQMQGAKVTNSVTKSTDILIAGADAGSKLTKAEKFGTEIWTEEEFATKQNEINNE 668


>gi|325977951|ref|YP_004287667.1| NAD-dependent DNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177879|emb|CBZ47923.1| NAD-dependent DNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 652

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 223/701 (31%), Positives = 353/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L  E++ +   YY   +P + DSEYD L R    +  A P+L     PN P  +
Sbjct: 2   KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRVK-----AEFPNASYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP    L  P  I VRGE Y+ K  
Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHK--LAQPLNITVRGEAYLPKTS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N+E    G+  +ANPRNAA+G LR+LN T +    N       + +      Q ++
Sbjct: 172 FDKINEERRDSGQTEFANPRNAAAGTLRQLN-TVVVAKRNLATFLYQEVASTSMTTQNDV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+++   GF VN      ++   I  +  E+ + R  LPYDIDG+V KV+  ++Q++LG 
Sbjct: 231 LEELSRYGFSVNPRRITTSSMTDIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++ ++R     P   P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKRDK-QVPMPIPESCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC   L C +Q  ERL HF SRDA NI GLG   +   FK+
Sbjct: 399 GSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKLFKA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           E     +   ADI+ L      S      + GF + S   LY++I   +  S ++ +F L
Sbjct: 452 E----LVHDVADIYQLTVEDLLS------LDGFKEKSAEKLYNAIQVSKENSADKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA+ +R L + + +                 D  S+  +  +G +IA ++  ++ 
Sbjct: 502 GIRHVGAKASRQLLEVFETIDQLVAA----------DADSIASIDGLGTVIANSLRSYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  +  L            + +  +++    +V TG L+++ R++A+E +  LGA 
Sbjct: 552 KKEATELLHELKNAGVNFAYLGKKVSKDAQLAGLTVVLTGKLERLTRNEAKEKLQDLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTDI++ G + GSKL KAQ LG+ + +E     L
Sbjct: 612 VTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDEAWLESL 652


>gi|330994412|ref|ZP_08318338.1| DNA ligase [Gluconacetobacter sp. SXCC-1]
 gi|329758538|gb|EGG75056.1| DNA ligase [Gluconacetobacter sp. SXCC-1]
          Length = 712

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 272/712 (38%), Positives = 395/712 (55%), Gaps = 37/712 (5%)

Query: 13  SIEQ----ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           ++EQ    A K L+ L   +   D  Y+Q+  P++ D+ YD+L++    +   FPDL R+
Sbjct: 23  TMEQDAPNAEKALTQLATLLPALDAAYHQHDAPLVDDATYDSLRQLNTRLEARFPDLRRT 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SI 126
              + P  ++G        +  H +P LSL+ +++ E+   FI+RI RF    ++    +
Sbjct: 83  ---DSPAQQVGAPATGPFRRHRHMVPMLSLDNVFSREEFEGFISRIARFLGLDEEQARQL 139

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            F  EPKIDG  I++ YE G+FV    RGDG  GEDV+A +R +  IP  L    P++IE
Sbjct: 140 SFVAEPKIDGLSISLTYEHGRFVRGTTRGDGTEGEDVTANLRTLRDIPDQLPAPCPDVIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           +RGEV++SK  FL LN      G +P+ANPRNAA+G LR+L+      R L+ F +  G 
Sbjct: 200 IRGEVFLSKQAFLELNAAQERAGDRPFANPRNAAAGSLRQLDAGITARRPLSLFAYAAGY 259

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A   +  L ++   GF VN    Q        ++   +   RS L YDIDG+VYK
Sbjct: 260 CSAPLAATHHGYLAQLAAWGFRVNPLSTQVKDAGAAEAFMERLTLERSALDYDIDGIVYK 319

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +D+ +LQ++LG   R+PRW ++ KF  +QA TRL  IDIQ+GRTG LTPVA LEPVN+GG
Sbjct: 320 LDDRALQERLGFAGRAPRWAVAWKFPAEQAVTRLEKIDIQVGRTGALTPVAFLEPVNVGG 379

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++T A+LHNED I             +DIR GD V V+RAG+VIP+V  +++  R  D 
Sbjct: 380 VMVTRASLHNEDEITR-----------KDIREGDLVHVQRAGDVIPQVTGVVLP-RDHDR 427

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P+ FP  CP C +   R             RC+GGL C AQ +ERL HFVSRDAF+IEG
Sbjct: 428 PPYRFPHVCPACGAHAERPEGE------VVWRCSGGLTCPAQVVERLIHFVSRDAFDIEG 481

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + +  F +       +R PADIF L   +     +I +  G+G VS  NL  +I  R
Sbjct: 482 LGDRTIVEFHE----LGWLRTPADIFRLDAHEA----EIASRDGWGRVSAHNLVTAIAAR 533

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R I L R I++LGIR +G   AR LA++Y S  N+  ++       +D  L L  +  +G
Sbjct: 534 RTIELSRLIYALGIRRIGINNARLLARHYGSLANWRAQMEKAAVIGSDARLELGSITGIG 593

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             IA  +V F+    N   ++ L   V   +   +      +  + +VFTGTL  + R +
Sbjct: 594 TAIADELVAFFAEAHNRATLDDL-THVLDHVTDEQAVAEGTLSGRTIVFTGTLTTMTRPE 652

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           A+    +LGA VS  +S KTD++++G+  GSK  KA +LG++ M+E  +  L
Sbjct: 653 ARAVAERLGARVSDSVSTKTDLVVLGEKAGSKARKAAELGIRTMDEAGWRVL 704


>gi|306825169|ref|ZP_07458511.1| NAD-dependent DNA ligase LigA [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432605|gb|EFM35579.1| NAD-dependent DNA ligase LigA [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 652

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 211/700 (30%), Positives = 358/700 (51%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   ERMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEL-----PQPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVVGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRTSF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q ++L
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEVSPSTRDSQEKVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN+    A +   I ++  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 KHLEQLGFVVNSKRILAESMDEIWNFIQEVGQERDNLPYDIDGVVIKVNDLAGQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCD 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
            +++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 CQLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ L             + G  + S + LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLNEDDF------LLLEGVKEKSASKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +++ S +N AQ           D   +  +  +G +IAQ++  ++  
Sbjct: 503 IRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGSVIAQSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   ++ L +       +       + +    +V TG L+++ R +A+  +  LGA V
Sbjct: 553 EGSKILLDELKEAGVNLDYKGQTVVADAVLSGLTVVLTGKLERLTRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KT++++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSVSKKTNLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652


>gi|320008426|gb|ADW03276.1| DNA ligase, NAD-dependent [Streptomyces flavogriseus ATCC 33331]
          Length = 731

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 211/742 (28%), Positives = 346/742 (46%), Gaps = 61/742 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + R+  + L ++I  H   YY   +P++ D+E+D   R  +AI H  P+L     P+ 
Sbjct: 14  PAEVRERHALLAEQIEEHRFRYYVKDQPVVDDAEFDRQMRALEAIEHEHPEL---RTPDS 70

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G        V H    LSL+  ++  +L  +  R+ +           F  E K
Sbjct: 71  PTQKVAGPYTTEFTSVEHRERLLSLDNAFDDGELAAWAERVAKDVG---GGGYHFLCELK 127

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG +GED++  +R I  IP  L  +  P ++E+RGEV+
Sbjct: 128 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPLRLKGDDIPALVEIRGEVF 187

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G       
Sbjct: 188 FPMEAFEGLNARLVEAGDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREGFGI 247

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               +    +R  G P     +   +   +  +       R ++ ++IDG+V K+DE  L
Sbjct: 248 DRLSQAYDLLREWGLPTARHNKVVESLDEVREFIAWFGENRQSVEHEIDGVVVKLDEIPL 307

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ +  A
Sbjct: 308 QGRLGSTSRAPRWAIAWKYAPQEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVAGSEVEFA 367

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN++ +K            + + +GD V++++AG+VIP+++  +V+ R      F  P
Sbjct: 368 TLHNQNVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEHAFVMP 416

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG---- 487
           S CP C + +         +     RC    +C AQ  ER+ +   R   +I+  G    
Sbjct: 417 SECPECGTPLRPM-----KEADIDLRCPNARSCPAQLRERVAYLAGRKCLDIDHFGYVAA 471

Query: 488 --------------KQQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTK-----IEN 526
                           + D F  + +    IR         L +R   +  +       N
Sbjct: 472 AALTRPLEPEEPPLLDEGDLFGLTVEQLLPIRAYFLDPDSGLPKRDPKTGEEKIATVFAN 531

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             G    +   + + I   R   L R +  L IRHVG   A  LA+ + S +   +    
Sbjct: 532 QQGEPKKNALGMLEGIAAARQAPLARILTGLSIRHVGPVAAVELARQFRSIERIDEASEE 591

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVS 644
            +A              VG IIA ++ +++    +   +    +           E    
Sbjct: 592 ELAAA----------DGVGPIIAASVKQWFAEDWHREILRKWREAGVRMEDEGAGEDEGP 641

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TGTL    R  A++ +  LGA V+  +S+KT  ++VGDNPGSK +KA QL
Sbjct: 642 RPLEGLTVVVTGTLAAHTRDGAKDALQSLGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQL 701

Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726
            V +++EE F  LL+Q     R
Sbjct: 702 KVPVLDEEGFAVLLEQGPDAAR 723


>gi|325125239|gb|ADY84569.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 671

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 207/714 (28%), Positives = 357/714 (50%), Gaps = 49/714 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S+E+A++E+  L  ++      YY+   P++ D  YD    R   +  A+ +L      +
Sbjct: 4   SLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYSELK---SAD 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
               ++GGE+N  L KV H +P LS+  +++ E+L +F  R+ +       + + + +E 
Sbjct: 61  SITQRVGGEVNSDLPKVEHPVPMLSMGDVFSKEELAEFDQRVQKAIG----HPVAYNVEL 116

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  +++ YE+G    A+ RG+G  GEDV+  ++ I  +P+ L   I    EVRGE Y
Sbjct: 117 KIDGLSLSLEYEEGCLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGECY 174

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +SK  F  LN E    G   +ANPRNAA+G LR+L+P    +                  
Sbjct: 175 MSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAGID 234

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q++ + +M  LGF  N   R+      +  Y +E    R +LPY IDG+V KVD+ +LQ
Sbjct: 235 SQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDDLALQ 294

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G+ +  A+
Sbjct: 295 ADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGSTVARAS 354

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D +  L           D+R+GD V + +AG++IP++ ++++++R  D+ P+  P+
Sbjct: 355 LHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPYEVPT 403

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +V            A RC    +C AQ  E + HF SR A NI GLG + + 
Sbjct: 404 KCPSCGEDLVHLDEE------VALRCINP-SCPAQVEEGITHFASRQAMNIAGLGPKIVK 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                +     +   AD++ L     +       +  F + S+ NL  +I++ R  S+E 
Sbjct: 457 QLIAKD----LVHNVADLYYLTADDLS------QLDHFKEKSINNLLVAIDQSRKNSVEL 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGI +VG + A+ +A+ + +    A                L  +  +G  IA+++
Sbjct: 507 VLFGLGIDNVGGKAAQLIARKFKNMSKIASA----------SVQELTAIDTIGMTIAESL 556

Query: 613 VEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
             ++Q       +  L +        G   +   +  + K +V TG L    R +  + +
Sbjct: 557 TAYFQPEEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAEFTKKL 616

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             LGA V+  +S+KTD ++ G++ GSKL KA+ L +  + E + +  +++ +T 
Sbjct: 617 QALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDTE 670


>gi|239944478|ref|ZP_04696415.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 15998]
 gi|239990936|ref|ZP_04711600.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 11379]
 gi|291447943|ref|ZP_06587333.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 15998]
 gi|291350890|gb|EFE77794.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 15998]
          Length = 743

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 208/733 (28%), Positives = 348/733 (47%), Gaps = 61/733 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            R+  + L ++I  H   YY   +P++ D+E+D L R  +A+   +P L     P+ P  
Sbjct: 17  VRETHALLAEQIEEHRFRYYVKDQPVVSDAEFDRLLRSLEALEDEYPPL---RTPDSPTQ 73

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++ G        V H    LSL+  ++ E+L  +  R+ +     D +   F  E K+DG
Sbjct: 74  QVAGPYITEFTSVEHRERMLSLDNAFDDEELAAWADRVAKETGTPDHH---FLCELKVDG 130

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISK 195
             + + YE G+   AA RGDG +GED++  +R I  IP  L     P ++E+RGEV+   
Sbjct: 131 LAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGEDIPALVEIRGEVFFPM 190

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN  ++A   KP+ANPRNAA+G LR+ +P    +R L+  VHG+G    +     
Sbjct: 191 EGFEELNARLVAADDKPFANPRNAAAGSLRQKDPKVTASRPLHMVVHGIGAHEGLRIDRL 250

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            +    +   G P     R  ++  G+  +       R ++ ++IDG+V K+DE  LQ +
Sbjct: 251 SQAYDLLHSWGLPTARHNRVVDSLAGVREFIAYFGEHRHSVEHEIDGVVVKLDEIPLQGR 310

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ +  ATLH
Sbjct: 311 LGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVAGSEVEFATLH 370

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N++ +K            + + +GD V++++AG+VIP+++  +V+ R    + F  P+ C
Sbjct: 371 NQNVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEKAFEMPTHC 419

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +         +     RC     C AQ  ER+ +   R + +I+  G       
Sbjct: 420 PECGTELRPM-----KEGDIDLRCPNARTCPAQLRERVFYLAGRKSLDIDHFGYVAAAAL 474

Query: 495 FKSEDPAFSI-RIPADIFTLQRRQQTSTTKI------------------------ENILG 529
            +  +PA  + +  +D+F+L   Q                                N  G
Sbjct: 475 TRPLEPAEPVLKDESDLFSLTIEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATVFANQQG 534

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
               +   + + I   +   L R +  L IRHVG   A+ LA+ + S     +     +A
Sbjct: 535 EPKKNAVAMLEGIAAAKEAPLARILTGLSIRHVGPVAAQELARQFRSVDRIDEATEEELA 594

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEI 647
                         VG  IA +I +++    +   +    +           E      +
Sbjct: 595 AA----------DGVGPTIAASIKQWFAEDWHREILRKWREAGVRMADEGSDEDEGPRPL 644

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
           E   +V TGTL    R  A+E +  LGA V+  +S+KT  ++VGDNPGSK +KA QL V 
Sbjct: 645 EGLTVVVTGTLAGHTRDGAKEALQTLGAKVTGSVSKKTAFVVVGDNPGSKYDKAMQLKVP 704

Query: 708 IMNEEQFLFLLQQ 720
           +++E+ F  LLQ 
Sbjct: 705 VLDEDGFAILLQD 717


>gi|294661389|ref|YP_003573265.1| hypothetical protein Aasi_1926 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|254781251|sp|C3L496|DNLJ_AMOA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|227336540|gb|ACP21137.1| hypothetical protein Aasi_1926 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 671

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 224/714 (31%), Positives = 373/714 (52%), Gaps = 50/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  EQARKE+  L   ++YH+  YY+ ++P I D E+D L  +  A+ + FPDL     P
Sbjct: 1   MDKEQARKEIKRLTALVAYHNKLYYEEAQPEISDYEFDQLLEKLIALENQFPDL---RLP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GGE +     V H  P LSL   ++ E++ +F+ R ++        +I F  E
Sbjct: 58  NSPTQRVGGEPSKKFATVYHQYPMLSLSNTYSAEEVMQFVKRAHKQL---PGATIEFFCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
            K DG  I++ Y++GK      RGDG  G+D++   + IP IP+++   ++P   EVRGE
Sbjct: 115 LKFDGVAISLLYKEGKLDKVVTRGDGFKGDDITENAKQIPNIPQIIEHKDLPPAFEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
            ++S  DF  LN + +A G +P ANPRNA +G L+ L  T   R+L+ +++ L  T    
Sbjct: 175 AFMSLADFEKLNRDRLAHGLEPLANPRNATAGTLKTLKSTGPKRWLDCYMYSLLSTDMDL 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  +Q +    F V+   ++  T   +++Y    +S +++LP  IDG+V KV++  
Sbjct: 235 P-THEVCIQWLEKWCFHVSPTYKKCRTLEEVMAYIEYWESAKNSLPVAIDGVVIKVNDTL 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  A+SPRW I++K+  +  +T L  +D Q+GRTG++TPVA L+P+ + G ++  
Sbjct: 294 QQNKLGLTAKSPRWAIAYKYKPENLATILESVDYQVGRTGVITPVAHLKPILLAGTIVKR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN   I+ L           D+ +GD V +++ GE+IPK+    V++R  D++P  F
Sbjct: 354 ATLHNAGEIQRL-----------DLHLGDTVFIEKGGEIIPKITGTDVSKRSLDSEPVKF 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            + CP C + +V+          A + C     C  Q    LKHFV R A +I  +GKQ 
Sbjct: 403 VTHCPACGTELVKRYEK------ALYYCPNTKGCPYQLQGLLKHFVHRKAMDIRSIGKQT 456

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++           +  PAD+++L+ +   S      + GF D++  N+   I   +    
Sbjct: 457 IEMLINR----GLVHTPADLYSLKYQDIRS------LEGFKDLATRNVLSGIESSKQRPF 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F+LGIRHVG  IA  + +YY      +                LI +P +G  IA 
Sbjct: 507 ERVLFALGIRHVGEVIADKITQYYTDIDTLSNAT----------VEDLIAIPFIGTEIAH 556

Query: 611 AIVEFYQNPRNICAVEALLKEVS----PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++  +++NP N+  ++ L +       P +       S  +  K  V +GT Q  +R + 
Sbjct: 557 SVTNYFENPENLALIDVLKQAGLQLSRPQLATVFATQSLPLSGKTFVISGTFQNFEREEL 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           +E + + G  +   +S K + +I+G+NPG  K+ +AQ LG+  +NE + L +L+
Sbjct: 617 KELIKKKGGGILTNISAKLNYLIIGENPGPGKVAQAQALGISTINETEILQMLE 670


>gi|289428790|ref|ZP_06430473.1| DNA ligase (NAD(+)) [Propionibacterium acnes J165]
 gi|289158188|gb|EFD06408.1| DNA ligase (NAD(+)) [Propionibacterium acnes J165]
          Length = 753

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 211/746 (28%), Positives = 339/746 (45%), Gaps = 74/746 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P
Sbjct: 31  AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 87

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ ++  ++L +++ R+     K  +    F  E K
Sbjct: 88  TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 143

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           IDG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L+ +     +EVRGEV+
Sbjct: 144 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 203

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 204 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 263

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+ SL
Sbjct: 264 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 323

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 324 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 383

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 384 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 432

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C   +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 433 DHCPSCGVELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 487

Query: 492 DFFFKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIE 525
                 E+                       A    +  D        +RR+        
Sbjct: 488 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 547

Query: 526 NILGFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
            +  +                   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 548 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 607

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +               L  V  VG+IIA+++  +++   +   +        
Sbjct: 608 FGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 657

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 658 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 717

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GSK  KA+ LG  I++E  F +LL+
Sbjct: 718 AGSKETKARDLGRPILDEAGFRYLLE 743


>gi|253575959|ref|ZP_04853293.1| DNA ligase, NAD-dependent [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251844753|gb|EES72767.1| DNA ligase, NAD-dependent [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 672

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 196/717 (27%), Positives = 332/717 (46%), Gaps = 60/717 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            A + +  L ++++ ++  YY   +PII D EYD L     A+            P+ P 
Sbjct: 2   DAMQRMEQLVEQLNRYNYHYYTLDEPIISDKEYDQLYDELTALEAE----TGITLPDSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-------NSIFF 128
            ++GGE+        H  P  SL+K  N E L  +  R+ +     +            +
Sbjct: 58  GRVGGELLEGFKPHRHLAPLWSLDKAQNEEQLLNWNNRVLKLIADYNSKNPTTPLPDPTY 117

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E K DG  + + Y  G+ V AA RG+G  GE +   ++ I ++P  +       IEV+
Sbjct: 118 VVELKFDGLTLNLTYTDGQLVQAATRGNGVVGEGILPQVKTIKSVPLTIP-YRDGTIEVQ 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247
           GE  ++ +     N+       +P  N RNAA+G LR LNP     R LN F + +G + 
Sbjct: 177 GEGIMNLSVLAKYNETA----AEPLKNARNAAAGALRNLNPRTTAERKLNAFFYNVGYSD 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            +  +   EM+  ++   F VN  V    +F  ++   +E+   R TL Y IDG V K+ 
Sbjct: 233 NLKFQDHREMMAFLKDNRFKVNPYVTYHASFDKVIGALHEIVEKRPTLDYLIDGAVIKIT 292

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   ++ LG   + PRW ++ KF  ++ +T L  +   +GRTG +TP+A++EPV + G  
Sbjct: 293 DMRTREVLGYTDKFPRWAVAFKFEAEETTTILESVSWNVGRTGKITPLAKVEPVELAGVT 352

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           + N TL+N   I+  +             +G RV ++R+ +VIP+++  + +E       
Sbjct: 353 VQNCTLNNIGDIERKNLKYA---------LGTRVFIRRSNDVIPEILGKVPDEPEGGE-- 401

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             +P  CP C + + +          A   C   L C  Q + R+ HF SRDA +IE   
Sbjct: 402 IIYPEVCPACGTPLEQR--------GAHLFCNNRLGCKPQIVARITHFASRDAMDIETFS 453

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++  +          ++R PAD++TL             +  FG+     L  +I   + 
Sbjct: 454 EKTAEQLHDE----LNLREPADLYTLTFDDLIK------LERFGEKKANKLLQAIEVSKG 503

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L  F+F+LGI + G    + LA ++ S +                   L  +P +G I
Sbjct: 504 RDLASFLFALGIPNTGKSTTKVLADHFGSLEAVMSATT----------EELTALPDIGGI 553

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRH 664
           +A +IV F+ +P     +  +L+         +       S    K +V TGTL ++ R 
Sbjct: 554 VADSIVNFFADPFYQAGIRKMLELGVSPKAPVKSAAPVTGSFFSGKTVVLTGTLHQMSRD 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQ 720
           +A E +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ ++ +E + + LL +
Sbjct: 614 EATERLEALGAKVTGSVSKKTDLVIAGEKAGSKLAKAQELGIPVIEDENELIRLLNE 670


>gi|86742328|ref|YP_482728.1| DNA ligase, NAD-dependent [Frankia sp. CcI3]
 gi|123750794|sp|Q2J6U3|DNLJ_FRASC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|86569190|gb|ABD12999.1| DNA ligase, NAD-dependent [Frankia sp. CcI3]
          Length = 706

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 226/700 (32%), Positives = 347/700 (49%), Gaps = 48/700 (6%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +E+  H   YY    P I D+EYD L     A+    PDL     P+ P  K+ G  +
Sbjct: 29  LARELDEHAYRYYVLDSPTISDAEYDRLMAELAALEERHPDL---RTPDSPTQKVAGSYS 85

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
                V H    LSLE +++ ++  ++  R+ R     +     +  E KIDG  + + Y
Sbjct: 86  TLFTPVEHLERMLSLENVFDDDEFHQWAARVAR-----ESEVDAWLCELKIDGLAVDLVY 140

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALN 202
           E G  V AA RGDG +GED++  IR + ++P  L     P ++EVRGEV+     F  LN
Sbjct: 141 EDGYLVRAATRGDGRTGEDITPNIRTLASVPVRLRGPRVPGLLEVRGEVFFPTAKFAELN 200

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
             ++AVG KP+ANPRNAA+G LR+ +P    TR L   VHGLG         Q     + 
Sbjct: 201 AGLVAVGGKPFANPRNAAAGSLRQKDPRVTATRPLEMIVHGLGAQRGFEVTSQSAAYARF 260

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             LG PV        T  G++ Y +     R  + ++IDG+V KVD F+LQ++LG  ++S
Sbjct: 261 AELGLPVATHFEVLATVPGVLDYVHRWGDARHDVVHEIDGVVVKVDSFALQRRLGSTSKS 320

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW +++K+  ++ +T+L DI + +GRTG +TP   LEPV + G+ +  ATLHN D +  
Sbjct: 321 PRWAVAYKYPPEEVTTKLRDIRVNVGRTGRVTPFGELEPVLVAGSTVGLATLHNIDEV-- 378

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                    G + + +GD V++++AG+VIP++V  +V+ R    + F  P+ CP C + +
Sbjct: 379 ---------GRKGVLIGDTVVLRKAGDVIPEIVGPVVDLREGSERAFVMPTRCPECGTEL 429

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           VR             RC   ++C AQ  E + HF SR A +I+GLG +      +    A
Sbjct: 430 VRPEGE------VDIRCPNTVSCPAQLRESIFHFASRGAMDIDGLGYETATALLE----A 479

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             +R   DIF L           E + GF    +  +   +   R+  L R +  L IRH
Sbjct: 480 GRVRDIGDIFHLTPE------SFEGLRGFAQKKIDQILRGVEAARHRPLWRLLVGLSIRH 533

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG   AR+LA+   S +  A                L  V  VG  IA A+++++ + R+
Sbjct: 534 VGPTAARALARELRSLEAIAAT----------SAEDLAAVEGVGPKIAGAVLDWFADERH 583

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
              +  +    +       +     ++   +V TGTL    R  A+E V   G  V+  +
Sbjct: 584 RDILARIAAGGARLADVGAEEGPRPLDGVTVVITGTLTDWSRDSAKEAVEARGGKVTGSV 643

Query: 682 SRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           SRKT  ++VG +PG SK +KA+ L + +++E  F  LL Q
Sbjct: 644 SRKTTAVVVGADPGASKYDKARSLRIPMLDEAGFAVLLAQ 683


>gi|169350953|ref|ZP_02867891.1| hypothetical protein CLOSPI_01730 [Clostridium spiroforme DSM 1552]
 gi|169292015|gb|EDS74148.1| hypothetical protein CLOSPI_01730 [Clostridium spiroforme DSM 1552]
          Length = 682

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 217/703 (30%), Positives = 356/703 (50%), Gaps = 47/703 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
             + L+Q+I YH+D YY    P I D EYD + +   A+    P+       + P  K+G
Sbjct: 24  RYNELKQKIMYHNDRYYNQDDPEISDYEYDMMMQELKALEKKHPEYI---TEDSPTQKVG 80

Query: 80  GEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GE    +   V H++P LSL+ +++ E++ +F+  +         +   F +E KIDG  
Sbjct: 81  GEAKREAGVLVRHNVPMLSLQDVFSKEEVEQFVKDMQEQL-----DDPTFVVEYKIDGLS 135

Query: 139 ITIRYEKGKFVYAALRGDGH-SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
           + +RY  GK   A  RGDG   GEDV+A  + I  + + L   I E +EVRGEVY++   
Sbjct: 136 LALRYVNGKLDVAITRGDGILQGEDVTANAKVIKDVKKKLKEPI-EYLEVRGEVYMTNEA 194

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+     G+K +ANPRN A+G LR+L+      R L+ FV  +            E
Sbjct: 195 FNQVNEMQEIKGKKTFANPRNCAAGTLRQLDSKITKERNLSMFVFNIQDVRGKQFVSHSE 254

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
             + ++  G  V    +   T   +     E+   R  L YDIDG V K+D F  +++LG
Sbjct: 255 GYEYLKKQGIKVIENYKICKTADEVWQAIEEIGENRDKLKYDIDGAVVKIDNFEDRRKLG 314

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ PRW I++K+  ++  T+LL+I++ +GRTG +TP A  EP+ + G  ++ ATLHN+
Sbjct: 315 NTAKVPRWAIAYKYPPEEKETKLLEIELSVGRTGRITPTAIFEPIRLCGTTVSRATLHNQ 374

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I  L           DIR+GD ++V ++GE+IPKV  ++  +R  ++ P+     CP+
Sbjct: 375 DFIDDL-----------DIRIGDTIVVYKSGEIIPKVKRVVKEKRPTNSVPYVIGDRCPV 423

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  +R+ N    K           +C ++ +  + +FV RDA +I+G G   ++    
Sbjct: 424 CNAPAIREGNNADIK-------CTNHSCPSKLVRNIVNFVGRDAMDIKGFGLAYVETLVS 476

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  +DI++L  ++Q    K          S  NL ++I K +N    + + S
Sbjct: 477 ----LGYIKDLSDIYSLIGKRQELLDKKVI---GLVKSTDNLLNAIEKSKNNDASKLLTS 529

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI +VG   A++L K + S  N               +  LI V  +GDI A AI+ ++
Sbjct: 530 LGISNVGKSAAKNLMKKFKSIDNLMNA----------SYAQLIEVNDIGDISAMAIINYF 579

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +NP N   ++ L           +++     +    V TGTL  + R +A + + + G  
Sbjct: 580 KNPDNRIVIDKLKNYGVNMKIIEDQDSDDRFDGMTFVVTGTLPTLSRKEASDIIEKHGGK 639

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           VS  +S+KT+ ++ G+N GSKL KAQ L VKI++EE    +++
Sbjct: 640 VSGSVSKKTNYLLAGENAGSKLIKAQSLNVKIIDEETLFEMVK 682


>gi|172040410|ref|YP_001800124.1| NAD-dependent DNA ligase LigA [Corynebacterium urealyticum DSM
           7109]
 gi|254781300|sp|B1VG01|DNLJ_CORU7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171851714|emb|CAQ04690.1| DNA ligase [Corynebacterium urealyticum DSM 7109]
          Length = 712

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 206/733 (28%), Positives = 340/733 (46%), Gaps = 59/733 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +  ++  SL  ++ +H + YY Y  P I D+E+DAL  R     ++ P+         
Sbjct: 23  LAELAQQWQSLADQVRHHREVYY-YGNPEISDAEFDALLTRLQEFENSHPEAVTGP---S 78

Query: 74  PLNKIGGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           P  ++      +     V H  P LSL+ +++ E L  ++ R           +  +  E
Sbjct: 79  PTTEVAPSPPESSPFRNVDHQEPMLSLDNVFDTEQLSSWLDRT---------PAKTYLTE 129

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP----RVLSLNIPEIIEV 187
            KIDG  I + Y  G    A  RGDG +GED++   R +  IP          +PEI+E+
Sbjct: 130 LKIDGASINLLYRNGVLELALTRGDGTTGEDITHNARTLSDIPARLQPSEDFPVPEIVEI 189

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT 246
           RGEV+I   DF  +N +  A G+K +ANPRNAA+G +R+ +P +   R L    HG+G  
Sbjct: 190 RGEVFIRVEDFAKMNAQRQAEGQKMFANPRNAAAGAMRQKDPAETARRPLRLICHGIGAR 249

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                  Q+   + +   G PV+   +Q ++   ++         R    +++DGLV KV
Sbjct: 250 EGFTPASQHAAYEALAAWGLPVSPYTKQVHSAKEVLEQVAYWADHRHDADHEMDGLVIKV 309

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q++LG  +R+PRW I++K+  ++A TRL DI + IGRTG  TP A +EP  + G+
Sbjct: 310 DDTESQQRLGTTSRAPRWAIAYKYPPEEARTRLHDIRLGIGRTGRATPYAVMEPKYVAGS 369

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +T ATLHN                 + +R+GD +++++AGEVIP+V+  + + R+   +
Sbjct: 370 TVTMATLHNPSEAHR-----------KGVRLGDEIMIRKAGEVIPEVLGPVEDARNGAER 418

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F F S CP C + +            A  RC     C  Q   RL +   R AF+I+ L
Sbjct: 419 EFLFSSLCPECGTPLAPARG-----DDADWRCPNTRYCPGQLHTRLTYIAGRGAFDIDAL 473

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++       S      +     +F+L       T       G  +     L  ++   +
Sbjct: 474 GEKAAYDLIHS----GVLPDETGLFSLTEEDLRRTDAYTTKSGALNKQGETLLTTLAAAK 529

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            + L R I +L IRHVG   A++LA +Y S  + A            D  ++  V  VG 
Sbjct: 530 EVDLWRVIVALSIRHVGPTAAKALANHYGSIPDVAAA----------DVETMSTVDGVGP 579

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN---------VSSEIENKKLVFTGT 657
           IIA+++ +++    +   V+A             +           +  +    +V TGT
Sbjct: 580 IIAESVRDWFAVSWHQEIVDAWAAAGVRMEQDVTEQPSADAAGSIQADLLAGLSIVVTGT 639

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L+   R  A+E +   G   +  +S+KTD ++ G   GSKL KA++LG+ +++E  F  L
Sbjct: 640 LEDFDRSSAKEAIESRGGKATGSVSKKTDYLVAGAKAGSKLTKAEELGIPVLDEAGFHKL 699

Query: 718 LQQYNTTLRIHDD 730
           L +        +D
Sbjct: 700 LSEGPGKGDAEED 712


>gi|313793877|gb|EFS41901.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA1]
          Length = 740

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 211/746 (28%), Positives = 340/746 (45%), Gaps = 74/746 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P
Sbjct: 18  AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 74

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ ++  ++L +++ R+     K  +    F  E K
Sbjct: 75  TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 130

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           IDG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L+ +     +EVRGEV+
Sbjct: 131 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 190

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 191 FPVADFTDLNAALIEAGKNPFANPRNAAAGPLRQKDSRVTASRPLSMIVHGIGVLEGHDF 250

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+ SL
Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 310

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 370

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 371 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 420 DHCPSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474

Query: 492 DFFFKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIE 525
                 E+                       A    +  D        +RR+        
Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 534

Query: 526 NILGFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
            +  +                   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 535 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +               L  V  VG+IIA+++  +++   +   +        
Sbjct: 595 FGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GSK  KA+ LG  I++E  F +LL+
Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLE 730


>gi|290967938|ref|ZP_06559488.1| DNA ligase (NAD(+)) [Megasphaera genomosp. type_1 str. 28L]
 gi|290782077|gb|EFD94655.1| DNA ligase (NAD(+)) [Megasphaera genomosp. type_1 str. 28L]
          Length = 668

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 241/713 (33%), Positives = 385/713 (53%), Gaps = 48/713 (6%)

Query: 12  LSI--EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           ++   EQ +  L+ ++++++     YY    P + D EYD L R  + +   +P      
Sbjct: 1   MTKREEQEKVRLAEIKKQLAELSYQYYTLDAPTVSDYEYDMLYRELETLEKKYPQWV--- 57

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  +IG +++ +  K TH  P LSL  +++ E++R+F  R+ +         + + 
Sbjct: 58  TPDSPTQRIGSKISGTFAKYTHDRPMLSLGDVFSDEEVREFDARVRQEL---PGERVAYV 114

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +E KIDG  + + YEKG+FV    RGDGH GED++  +R I T+P  +S    + +E+RG
Sbjct: 115 VELKIDGLAVNLIYEKGRFVRGVTRGDGHVGEDITHNVRTIRTVPLHISDL-SDHVEIRG 173

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248
           EVY+    F ALN++  A   +P+ANPRNAA+G LR+ +P     R L+FF + LG TS+
Sbjct: 174 EVYMPIPAFRALNEQRSADELEPFANPRNAAAGSLRQQDPQVAAERKLSFFAYALGGTSD 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q  +LQ +R L FPVN   R       +++Y +   + R TL Y  DG+V KV+ 
Sbjct: 234 WRPESQEALLQTLRNLHFPVNREYRTFTDIQDVIAYIHTWDTRRDTLSYATDGMVIKVNS 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+ Q+ LG   + PRW I++KF  +QA T++L I + +GRTG+LTP A L+PV + G  +
Sbjct: 294 FAQQQMLGNTVKIPRWAIAYKFPPEQARTKVLQIRVGVGRTGVLTPTAELQPVRLAGTTV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
            +ATLHNE+YI+            +DIR+GD VL+++AGE+IP+VV  ++  R      F
Sbjct: 354 KSATLHNEEYIRS-----------KDIRIGDTVLIQKAGEIIPEVVRPVMEARTGREVVF 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C  +V R+         AA RC    AC A   E++ HFVSR A NIEGLG 
Sbjct: 403 VMPTQCPSCGGQVQREAGE------AAVRCVNP-ACPAMVAEQIAHFVSRPAMNIEGLGT 455

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             +            I   AD+F L +       +I  + GFG+ S  NL  SI   +  
Sbjct: 456 AIVKQLIDH----GLIHDVADLFLLHKE------EILPLEGFGEKSADNLLQSIAAAKEA 505

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L R +F+LGIR VGA+  R LA+ + S Q  A            D  +L+ V  +G  I
Sbjct: 506 GLGRLLFALGIRFVGAKAGRILAETFGSMQALAAA----------DIATLMAVETIGPRI 555

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+++  ++ + + +  ++ L         +  + +++  + + +V TG LQ   R +A+ 
Sbjct: 556 AESVAAYFADSQKVRVIQKLAAAGVGMTEKKRQLINTSFDGEIVVLTGKLQHFSRKEAEA 615

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            ++  G   +A +++KT +++ G +PGSK +KA+ LG   + EE+F   L + 
Sbjct: 616 AISARGGSCTATVTKKTTLVVCGADPGSKYDKAKALGTPTIGEEEFCDRLNRE 668


>gi|300087757|ref|YP_003758279.1| DNA ligase, NAD-dependent [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527490|gb|ADJ25958.1| DNA ligase, NAD-dependent [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 687

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 238/712 (33%), Positives = 381/712 (53%), Gaps = 43/712 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++A+K + +L ++I++H+  YY   +P I D EYD L R    + + FP+LA  E    
Sbjct: 1   MDEAKKRIDTLRKQITHHNYLYYVKDEPEISDQEYDILFRELQILENEFPELASDE---S 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G + + +  ++ H  P LSL   ++ E+L+ +  RI +        ++ F  E K
Sbjct: 58  PTKIVGAKPSKTFSRIKHVKPLLSLANAFSHEELKVWYERIIKSLS---PETVEFVCEHK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  + + Y +GK V  A RGDG +GEDV+  ++ I ++P  ++ N+P+  EVRGEV++
Sbjct: 115 IDGLAVAVAYHEGKLVTGATRGDGETGEDVTNNLKTIYSLPHTVADNVPDKFEVRGEVFL 174

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA- 251
             ++FL LN   +      +ANPRNAA+G +R+L+P     R L+ F++GLG        
Sbjct: 175 PTDNFLRLNQMRLKQRLPLFANPRNAAAGSVRQLDPNVTAQRPLDIFIYGLGWAEPADFA 234

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              ++ LQK+  +GF +N   R  +T   I SYY E    R  LPY+ DG+V KV+++S 
Sbjct: 235 DNHWDTLQKLGEIGFKINPNNRLCHTLEDIQSYYQEWLGKRDQLPYEADGIVIKVNDYSQ 294

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG+ AR PRW I+ KF   QA TRL DI I +GRTG L P A LEPV +GG  I  A
Sbjct: 295 QESLGQIAREPRWAIAFKFPAPQAITRLKDIGISVGRTGTLNPFAILEPVKLGGVTIQRA 354

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHNE+ I+            +DIR+GD+V+V+RAG+VIP++V  I+ +    A+ FS  
Sbjct: 355 TLHNEEDIRR-----------KDIRIGDKVIVQRAGDVIPQIVRPIIEDSSNRAEVFSIT 403

Query: 432 SFCPICQSRVVRDLNPKTGKLVA--AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
                  S+    +        A          AC AQ  E+L+HFVS+   +I G+G++
Sbjct: 404 EKLKGPDSKPHCPVCNAVVTRTAGEVMYYCPNTACPAQLAEKLEHFVSKSGMDIRGMGEK 463

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
               F         I+  AD++ L+              G  + S   L  SI+  +N  
Sbjct: 464 LSTAFLNE----GLIKDVADLYNLKTEHLVGR------EGMKEKSAEKLITSISNSKNRP 513

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L   I++LGIRH+GAE A+SLA+ + S    A+               LI +P +G  IA
Sbjct: 514 LHNVIYALGIRHIGAENAQSLAREFGSLSELAKA----------SLERLISIPGIGVKIA 563

Query: 610 QAIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +++ ++  P N   V  L + +     +  +    SS I  K++V TG+L+ + RH A 
Sbjct: 564 DSMLNYFSEPHNQKIVSRLNEILETPTMLPANNAQFSSLISGKEVVITGSLKSMTRHDAW 623

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           E + + G +  A ++ KT  ++ G+  G+K++KA++  + I++E+  L +++
Sbjct: 624 EMIRRAGGIPKADITTKTSYLVAGEKGGTKIKKAKEGKIPIISEDDLLAMVE 675


>gi|270307958|ref|YP_003330016.1| DNA ligase, NAD-dependent [Dehalococcoides sp. VS]
 gi|270153850|gb|ACZ61688.1| DNA ligase, NAD-dependent [Dehalococcoides sp. VS]
          Length = 680

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 238/721 (33%), Positives = 365/721 (50%), Gaps = 57/721 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
            +   + E+ +L +EI+ H+  YY    P I DSEYDAL RR   +  A P+L     PN
Sbjct: 3   DMFSPQTEIENLRREINRHNQLYYVQDNPEISDSEYDALLRRLKELEEAHPELV---TPN 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G E   +   V H  P LSL   ++  +L  +  R+ +      + +     EP
Sbjct: 60  SPTQRVGAEPLKAFGIVNHPYPLLSLANAFSDTELEAWYLRVKKLLG---NAAFQIDCEP 116

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  + + Y  GKF   A RGDG  GE+++  +R I +IP     + P + E+RGEVY
Sbjct: 117 KMDGLAVALTYRNGKFTTGATRGDGFQGENITRNLRTIHSIPLNTEEDAPPVFEIRGEVY 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IF 250
           + K  F  LN E    G   +ANPRNAA+G LR+L+P     R L+ F++ LG   + + 
Sbjct: 177 LPKEGFAKLNCERADKGLSLFANPRNAAAGSLRQLDPLVTAERPLDIFIYALGYAEDSLL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +++L+    LGF +N   R  NT      YY EM   R +LPY+ DG+V+KVD  S
Sbjct: 237 PDSHWQILEYFSRLGFRINPRNRLVNTLAEAKEYYREMTENRDSLPYEADGVVFKVDSVS 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQK+LG+  R PRW I++KF  +Q +T L  I I +GRTG L P A LEPVN+GG ++  
Sbjct: 297 LQKKLGDAGREPRWAIAYKFPAEQVTTLLRKIGISVGRTGTLNPYAILEPVNVGGVVVKQ 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I             +DIR GD V+++RAGEVIP+VV  ++ +R P+++PFS 
Sbjct: 357 ASLHNEDDI-----------LRKDIREGDTVVIQRAGEVIPEVVAPVLAKRSPESKPFSM 405

Query: 431 PSF----------CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
                        CP+C   + R           A      ++C AQ   +L+HFVSR A
Sbjct: 406 EETLFNPKLSRPACPVCGGEIYRPAGE-------AMHYCANVSCPAQFERQLEHFVSRGA 458

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I G+G+       +       ++  +D++ L             +   G+ S  N+  
Sbjct: 459 MDIRGIGESLSVILAQE----GLVKNVSDLYYLTAADL------LKLPRMGEKSADNIIK 508

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I+  ++  L+R IF LGIRHVG E A  L+  Y      A                L  
Sbjct: 509 AISDSKSRPLDRVIFGLGIRHVGNETAALLSSRYGDIWALAGA----------GLDKLQT 558

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQ 659
           +P +G  IA +I  ++   +NI  +  L           + +  S  +   + V TG L+
Sbjct: 559 IPDIGAKIASSIKAYFSEEKNIAVIRRLETAGVKLASDQKPSHKSLPLSGVEFVVTGKLE 618

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + R + Q+ +  LG      +++ T  ++VG + GSKL KA+ +GVK ++E++ + +L+
Sbjct: 619 SLSREETQQKIRSLGGTAKDNVTKATRYLVVGADAGSKLAKARSMGVKELSEQELINMLE 678

Query: 720 Q 720
           Q
Sbjct: 679 Q 679


>gi|319946751|ref|ZP_08020985.1| NAD-dependent DNA ligase LigA [Streptococcus australis ATCC 700641]
 gi|319746799|gb|EFV99058.1| NAD-dependent DNA ligase LigA [Streptococcus australis ATCC 700641]
          Length = 652

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 210/701 (29%), Positives = 356/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
              +  L   ++++ + YY    P + D EYD L R   A+  A P+L +   PN P ++
Sbjct: 2   ETRMKELVTLLNHYAEEYYTKDAPSVSDYEYDKLYRELVALEEAHPELVQ---PNSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H+ P  SL+  ++ E+L  F  R+ +     +  ++ +  E KIDG 
Sbjct: 59  VGGTILKGFEKYQHTYPLYSLQDAFSYEELVAFDQRVRK-----EFPAVTYVCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +G     A RGDG  GE+++  ++ +  IP VL   +   + VRGE Y+ +  
Sbjct: 114 SISLSYVEGVLETGATRGDGSIGENITENLKRVRDIPLVLPEPL--TLTVRGECYMPRAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N      G   +ANPRNAA+G LR+L+   +            + S      Q ++
Sbjct: 172 FDAVNLSRQENGEAEFANPRNAAAGTLRQLDTKIVAE-RKLATFLYQEASPTDQTSQEKV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+  LGF VN   +   +   + +Y  E+ ++R  LPYDIDG+V KV++ ++Q++LG 
Sbjct: 231 LAKLERLGFVVNPHHKTVTSIEQVWAYIQEVAAMRDQLPYDIDGVVIKVNDLAIQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAKLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ +++++R  + +    PS CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVMDKRVSEERL-EIPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           QS ++   +        A RC     C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 QSELLHFEDE------VALRCINPR-CPAQIKEGLAHFASRDAMNITGLGPAVVEKLFSK 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           E     ++  A I+ L             + GF + S   L D+I   +  S E+ +F L
Sbjct: 452 E----LVQDVAGIYRLTVDDL------LQLDGFKEKSAQKLIDAIQASKGNSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L + + S    A+           +   +  +  +G ++A+++  ++ 
Sbjct: 502 GIRHVGSKASQLLLQEFHSIPALAEA----------EVERIAAIDSLGMVVAESLKRYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +E L            +    + +  K +V TG L+++ R +A+  +  LGA 
Sbjct: 552 QEGSQLLLEELKDAGVNLDYLGQKVAADAPLSGKTVVLTGKLERLTRSEAKAKLEALGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+ TD+++ G + GSKL KAQ+L ++I +E     L
Sbjct: 612 VTGSVSKNTDLLVAGSDAGSKLSKAQELSIEIQDEAWLESL 652


>gi|302023934|ref|ZP_07249145.1| NAD-dependent DNA ligase LigA [Streptococcus suis 05HAS68]
 gi|330832985|ref|YP_004401810.1| NAD-dependent DNA ligase LigA [Streptococcus suis ST3]
 gi|329307208|gb|AEB81624.1| NAD-dependent DNA ligase LigA [Streptococcus suis ST3]
          Length = 652

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 212/701 (30%), Positives = 360/701 (51%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +S L   ++ +   YYQ  +P + D+EYD L R    +  A P+L     P+ P ++
Sbjct: 2   KTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELIL---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG+M     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG 
Sbjct: 59  VGGKMLDGFEKYSHVYPLFSLQDAFSREELEAFDQRVRK-----EFPQATYICELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GE+++  ++ +  +P  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEAGNLVVGATRGDGSVGENITENLKRVADVPLTLPEAV--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N +    G   +ANPRNAA+G LR+L+   +            + S   A  Q ++
Sbjct: 172 FDRVNKQRQEAGEAEFANPRNAAAGTLRQLDTGVV-AQRGLATFLYQEASPSEATSQSQV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+K+  LGF  N+    A +      +  ++   R  LPY+IDG+V KV++ ++Q++LG 
Sbjct: 231 LEKLDALGFVTNHEYCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW +++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAVAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++   R         PS CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLKVVDKYRKEQEI-MPIPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           QS +    +        A RC   + C +Q + +L+HF SRDA NI GLG   ++  F  
Sbjct: 399 QSDLQHYEDE------VALRCINPI-CPSQLMSKLEHFASRDAMNIAGLGSSIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L      +      + GF + S   LY +I   ++ S E  +F L
Sbjct: 450 --GAGLVHDVADIYKLTVDDLLT------LEGFKEKSADKLYQAIQTSKSNSAECLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L + +   +  A            D  ++  +  +G +IA+++  F+ 
Sbjct: 502 GIRHVGSKASKILVEKFGDLETLAFA----------DQEAIASLEGLGQVIAKSLTTFFA 551

Query: 618 NPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +      +  L +  V+ +      + ++ +    +V TG L++++R++A+  +  LGA 
Sbjct: 552 SEGAQQLLAELKEAKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KT++++ G + GSKL KAQ+LG++I +E     L
Sbjct: 612 VAGSVSKKTNLVVAGTDAGSKLTKAQELGIEIKDEAWLESL 652


>gi|226226196|ref|YP_002760302.1| NAD(+)-dependent DNA ligase [Gemmatimonas aurantiaca T-27]
 gi|254781336|sp|C1A6H2|DNLJ_GEMAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226089387|dbj|BAH37832.1| NAD(+)-dependent DNA ligase [Gemmatimonas aurantiaca T-27]
          Length = 689

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 225/705 (31%), Positives = 345/705 (48%), Gaps = 47/705 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +    L +++      YY   +P + D EYD L R    I   +P L      + P  ++
Sbjct: 14  ERARELREQLGTAQHEYYVLDRPTLSDQEYDRLFRELQGIEAEYPTLC---TEDSPTRRV 70

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G  +  +     H +  LSL+  +++ +L  F   + R        S  +T+E KIDG  
Sbjct: 71  GAPVQSAFSPHRHLVRMLSLDNAFDLSELEDFEQSLKRVVGDAIHTSG-YTVELKIDGAA 129

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKND 197
           + + Y +G  V AA RGDG  GEDV+A +R I  +P  L   N P ++EVRGEVY+    
Sbjct: 130 VALTYREGVLVTAATRGDGTDGEDVTANVRTIRGVPLRLHGDNHPPLMEVRGEVYLPFAG 189

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLN--PTDITRYLNFFVHGLGKTSEIFAKGQY 255
           F  +N+  +A G   Y NPRNAA+G +R+L+   T       F    +       A+ Q+
Sbjct: 190 FERMNEARVAAGEPVYVNPRNAAAGSMRQLDSANTAARPLRFFGYAAVLPDGSAPARSQW 249

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVYKVDEFSLQKQ 314
           E+L+++   G PV    ++ +T     ++   ++        + IDG V KV++ +LQ +
Sbjct: 250 ELLEQLSAWGVPVAPHRQRCHTIQEAEAWATVVEHETRATLGFAIDGGVVKVNDMALQDE 309

Query: 315 LG-ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           LG    R+PRW ++ KFA   A T+L  ID+ +GRTG+LTP A LEPV++GGA +T A+L
Sbjct: 310 LGIRADRTPRWGVARKFAPDMALTKLRRIDVNVGRTGVLTPFAVLEPVDVGGATVTFASL 369

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I             +D+R GD V V RAG+VIP V+  +  +R    QP+S P+ 
Sbjct: 370 HNADQI-----------AAKDLREGDTVQVVRAGDVIPYVLGPVPEQRDGSQQPWSMPTQ 418

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + V R  +               +AC  +QLE L HF S+DA +I+GL   ++  
Sbjct: 419 CPRCNTPVERYGDD-------VAVYCPNVACPGRQLEGLVHFSSKDALDIDGLSYARIQQ 471

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                  A  +   AD+F +   Q TS      +  F   S  NL  +I   +   L R 
Sbjct: 472 LLD----AGLVHDVADLFDITVDQLTS------LERFAKKSAENLVAAIAAAKQQPLSRL 521

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F LGIRHVGA+ A+ L++ Y S                     L  V  +G IIAQ++ 
Sbjct: 522 MFGLGIRHVGAQAAQLLSRQYGSLDALMNAT----------AEQLGAVRGIGSIIAQSVA 571

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            ++ +P     +E L          +       +    +V TGTL  + R +A   V Q 
Sbjct: 572 SYFADPTTRALMERLRARGLRFDEPNAVQADGVLTGATVVLTGTLPSLSRGEATALVEQA 631

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G  V++ +S+KT  ++ G+  GSKL+KA++LGV ++ E + L  L
Sbjct: 632 GGRVTSSVSKKTTFVVAGEEAGSKLDKAKELGVTVLTEAELLEKL 676


>gi|298245037|ref|ZP_06968843.1| DNA ligase, NAD-dependent [Ktedonobacter racemifer DSM 44963]
 gi|297552518|gb|EFH86383.1| DNA ligase, NAD-dependent [Ktedonobacter racemifer DSM 44963]
          Length = 700

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 214/701 (30%), Positives = 355/701 (50%), Gaps = 50/701 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E+  K ++ L  +I   +  Y+    P + D+EYD L      I    P+L     P  
Sbjct: 29  EERLAKRVAELRHQIEEANYQYHVLDNPTLSDAEYDQLMIELQRIEGEHPELV---TPES 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G      + + +H +P LSL    + ++L  +  R         + +  +  E K
Sbjct: 86  PTQRVGAGPLQDVAQYSHPVPMLSLANARSEKELYDWYKRAQNIL---PNATFTYVCELK 142

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEV 191
           IDG  + + Y++G+    A RG+G  GED +  +R I +IP+ L     IPE +EVRGE+
Sbjct: 143 IDGLAMALTYDQGRLTMGASRGNGLVGEDWTPNVRTIRSIPQKLHDAAPIPEKVEVRGEI 202

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250
           Y+S   F  LN++      K +ANPRNAA+G LR+ +P    TR L+FF + +G    + 
Sbjct: 203 YMSTQSFEKLNEQ--MAENKLFANPRNAAAGSLRQKDPRITGTRNLDFFGYQIGYVQGMR 260

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +  +E LQ ++  GFP+N  V+ A+T   ++++ N+ +  R  LPY+IDG+V K+++ +
Sbjct: 261 IQSHWETLQLIKEWGFPLNPHVQLAHTLEEVMAFCNKWEHERFNLPYEIDGVVIKINDLA 320

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG  AR PRW I+ K+   Q +TRLLDI + IGRTG + P A LEP+NI G  ++ 
Sbjct: 321 HQEELGVVARDPRWAIAFKYPPIQVATRLLDIKVNIGRTGSVNPWAELEPINIRGVTVSR 380

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNE+ I+            +D+RVGD VLV+RAGEVIP+VV  ++ +R    + +  
Sbjct: 381 ASLHNEEDIQR-----------KDLRVGDWVLVQRAGEVIPQVVKPVMEKRTGSEEVYHL 429

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C + ++R  +        A      L C A+  E   HFVS+ A +++ +G++ 
Sbjct: 430 PENCPRCGTAIIRIPDQ-------AMAYCPNLQCPARNFESFTHFVSKGAMDMDTIGEKT 482

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
            +   +    A  ++  +D + L R           + G  + S  N+ ++I   +   L
Sbjct: 483 CEQLME----AGYLQSVSDFYHLTRDDL------LELEGIKEKSANNMLNAIEASKQRPL 532

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R +F L IR+VG + A+ LA  +                       +  VP +G  I Q
Sbjct: 533 SRLLFGLNIRYVGEKTAQLLADAFGDMDTLMAASEA----------QINEVPGIGPKIGQ 582

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ +++Q   N   +E L            K+V   +  +  + TG L  + R  A+E +
Sbjct: 583 SVAQWFQQEENQALIERLRAAGLNMREER-KHVEGPLTGQSFLLTGRLNTMTRTAAEEAI 641

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
             LG  +++ +S+    +I G++ GSKL KAQ+  V + +E
Sbjct: 642 KALGGTIASGVSKSLSHLIAGEDAGSKLAKAQKAKVPVHDE 682


>gi|297621454|ref|YP_003709591.1| NAD-dependent DNA ligase LigA [Waddlia chondrophila WSU 86-1044]
 gi|297376755|gb|ADI38585.1| NAD-dependent DNA ligase LigA [Waddlia chondrophila WSU 86-1044]
          Length = 665

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 226/705 (32%), Positives = 367/705 (52%), Gaps = 46/705 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++   +L +E+  H+  YY    P+I D E+D L +  + I    P+     DPN P  +
Sbjct: 3   KENYEALCKEVWEHNKRYYIDHAPLINDEEFDLLLKELEEIEKMHPEWI---DPNSPTQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  +        H  P LSL   ++ E++ +FI R+ +         + F+ E K+DG 
Sbjct: 60  VGEMLTEGFPTALHQTPMLSLANTYSKEEVDEFIKRMEK---LAGHKEMAFSCELKMDGI 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKN 196
            + + YE+G FV A  RGDG  G+D+SA ++ IP++P   +       IEVRGEVY+  N
Sbjct: 117 AVAVTYEQGGFVRAVTRGDGKKGDDISANLKTIPSLPLKLIDGKTLNRIEVRGEVYMPVN 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN          +ANPRNAA G L+ L+P     R L    +G+     +    QY
Sbjct: 177 AFETLNKTRKESNEALFANPRNAAGGSLKLLDPKATAQRSLAVVFYGISDPESLGLHSQY 236

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++   +  LG P     RQ  +   I ++  E++  R TL Y IDG+V K+D+ + QK+L
Sbjct: 237 DVHGFLGSLGLPTLEYRRQCFSREEIWNFVEEVRKKRETLSYQIDGIVIKLDDLAQQKRL 296

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   + PRW +++KFA +Q  TR+ DI +Q+GRTG++TPVA LEPV + G+ I+ ATLHN
Sbjct: 297 GSTGKQPRWAVAYKFAAEQTETRIRDIIVQVGRTGVITPVAELEPVLLAGSTISRATLHN 356

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           E+ ++            +D+R+GD  L+++ G+VIPKV+ I   +R   + P+  P  CP
Sbjct: 357 EEEVER-----------KDVRIGDSALIEKGGDVIPKVISINPEKRREGSMPWKMPDVCP 405

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C   +VR           A RC     C  Q L R+ +FVS++A  I+ LG++ +    
Sbjct: 406 SCGHPLVRVEGE------VAVRCPNREGCPEQLLRRIAYFVSKEAMEIDHLGEKVVKQLI 459

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       ++ P+DI+TL + Q        N+ GF + +   L   I   +++S  RFI 
Sbjct: 460 R----IGYVKRPSDIYTLTKEQL------LNLEGFKEKAAERLKQGIENSKHVSFSRFIM 509

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGI++VGA  A  LA          Q            +  L+++  +G+  A++++E+
Sbjct: 510 ALGIKYVGAGTAELLANRSGDIDGLKQL----------SYEELLKINGIGEKAAESVIEY 559

Query: 616 YQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           + +  N+  +E L K    P     +  +     NK  V TGTL+   R  A   + + G
Sbjct: 560 FSDAENLKEIERLKKFGVCPQKVERKTFIGHPFNNKTFVLTGTLENYTRTAAASLIKERG 619

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             V+  +S+KTD ++ G++PGSKLEKA+ LG++++ E +F+ ++ 
Sbjct: 620 GKVTGSVSKKTDYLLAGESPGSKLEKAESLGIQVLTESEFVKMIN 664


>gi|223044011|ref|ZP_03614051.1| DNA ligase, NAD-dependent [Staphylococcus capitis SK14]
 gi|222442554|gb|EEE48659.1| DNA ligase, NAD-dependent [Staphylococcus capitis SK14]
          Length = 667

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 239/714 (33%), Positives = 377/714 (52%), Gaps = 53/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +  ++ L   ++ +   YY    P + DSEYD L      I    P+   +   + 
Sbjct: 1   MKDLQSRVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIDIEEKHPEYKTA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRENIG-----NVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y+ G+FV    RGDG +GED++  +R I  IP  +   +    EVRGE Y+
Sbjct: 113 IDGLAVSLKYQNGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--FEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   +E  A 
Sbjct: 171 PRQSFMNLNAEKEENGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFDAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   LQ++  LGF  N    +     G++ Y  +    R +L YDIDG+V KV++   Q
Sbjct: 231 TQSGALQELDDLGFKTNQERERVADIDGVLDYIEKWTEKRESLSYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  ++LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVVSKLLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I++ R  DA+ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVKSILDRRPKDAKTYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 LCPSCDHELVRIEGE------VALRCINPK-CQAQLIEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +++E     I+  ADIF L+            +   G+  V NL  +I K ++ SLE 
Sbjct: 453 QLYENE----LIKDVADIFYLKEEDL------LPLERMGNKKVENLLAAIEKAKDNSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +                     L+ +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETMDRLLNVTE----------EELVAIHDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      ++ L  +      +  K        E   K +V TG L+++ R +A +
Sbjct: 553 VTYLENQDIRALIQKLKDKNVNMNYKGIKTTEIEGHPEFNGKTIVLTGKLEQMTRSEATQ 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++   GA V++ +++ TDI+I G + GSKL KA++ G +I  E++F    ++ N
Sbjct: 613 WLEMQGAKVTSSVTKSTDIVIAGADAGSKLAKAEKFGTEIWTEDEFAKKQKELN 666


>gi|288904984|ref|YP_003430206.1| DNA ligase (NAD-dependent) [Streptococcus gallolyticus UCN34]
 gi|288731710|emb|CBI13271.1| DNA ligase (NAD-dependent) [Streptococcus gallolyticus UCN34]
          Length = 652

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 223/701 (31%), Positives = 352/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L  E++ +   YY   +P + DSEYD L R    +  A P+L     PN P  +
Sbjct: 2   KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRVK-----AEFPNASYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP    L  P  I VRGE Y+ K  
Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHK--LAQPLNITVRGEAYLPKTS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N E    G+  +ANPRNAA+G LR+LN T +    N       + +      Q ++
Sbjct: 172 FDKINKERRDSGQTEFANPRNAAAGTLRQLN-TVVVAKRNLATFLYQEVASTSMTTQNDV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+++   GF VN      ++   I  +  E+ + R  LPYDIDG+V KV+  ++Q++LG 
Sbjct: 231 LEELSRYGFSVNPRRITTSSMADIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G +++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTMVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++ ++R     P   P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKRDK-QVPMPIPESCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC   L C +Q  ERL HF SRDA NI GLG   +   FK 
Sbjct: 399 GSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKLFKV 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           E     +   ADI+ L      S      + GF + S   LY++I   +  S ++ +F L
Sbjct: 452 E----LVHDVADIYQLTVEDLLS------LDGFKEKSAEKLYNAIQVSKENSADKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA+ +R L + + +                 D  S+  +  +G +IA ++  ++ 
Sbjct: 502 GIRHVGAKASRQLLEVFETIDQLVAA----------DADSIASIDGLGTVIANSLRSYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  +  L            + +  +++    +V TG L+++ R++A+E +  LGA 
Sbjct: 552 KKEATELLHELKNAGVNFAYLGKKVSKDAQLAGLTVVLTGKLERLTRNEAKEKLQDLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTDI++ G + GSKL KAQ LG+ + +E     L
Sbjct: 612 VTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDEAWLESL 652


>gi|268319976|ref|YP_003293632.1| DNA ligase, NAD-dependent [Lactobacillus johnsonii FI9785]
 gi|262398351|emb|CAX67365.1| DNA ligase, NAD-dependent [Lactobacillus johnsonii FI9785]
          Length = 668

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 209/715 (29%), Positives = 363/715 (50%), Gaps = 50/715 (6%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+  +A +++  L +++    D YY    P++ D+ YD   +    +   FPDL  +
Sbjct: 1   MAVLTHSEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEQKFPDLVTA 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +    ++GGE+   L KV H +P LS+  +++ ++L++F  RI +       + + +
Sbjct: 61  ---DSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLVG----HPVAY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y KGK   A+ RG+G  GEDV+A  + I  IP+ L   +    EVR
Sbjct: 114 NVELKIDGLSLSLEYTKGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPEPL--TTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN E    G + +ANPRNAA+G LR+L+     +              
Sbjct: 172 GECYMEKEAFATLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ + +M  LGF  N   R+  +   +  + +E  + R+ L Y IDG+V KVD+
Sbjct: 232 RNITSQHQAIDEMNRLGFHTNQSGRRFESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G ++
Sbjct: 292 LSLQNELGNTVKVPRWEIAYKFPPEEQETVVRNIEWTVGRTGVVTPTAVMDPVKLAGTIV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN DY++            + +R+GD V + +AG++IP++  +++++R  D++P+
Sbjct: 352 SRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLSKRPKDSKPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG 
Sbjct: 401 EIPNVCPSCGETLVHLQDE------VALRCINPM-CPAQIEEGIIHFASRGAMNIMGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +            I   AD++ L   Q         +  F + S+TNL  SI   +  
Sbjct: 454 RIVKQLIDK----GFINDVADLYHLTPDQL------GQLDHFKEKSITNLLSSIENSKQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S E  ++ LGI HVGA+ AR + + Y + +  +Q               L  +  +G+ I
Sbjct: 504 SAELLLYGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIGETI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+++  ++  P     ++ L              E+   +  + K +V TG L    R +
Sbjct: 554 AESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSAFTRSE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +++
Sbjct: 614 FTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKIEK 668


>gi|42519595|ref|NP_965525.1| NAD-dependent DNA ligase [Lactobacillus johnsonii NCC 533]
 gi|81667534|sp|Q74I49|DNLJ_LACJO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|41583884|gb|AAS09491.1| NAD-dependent DNA ligase [Lactobacillus johnsonii NCC 533]
          Length = 668

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 209/715 (29%), Positives = 363/715 (50%), Gaps = 50/715 (6%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+  +A +++  L +++    D YY    P++ D+ YD   +    +   FPDL  +
Sbjct: 1   MAVLTHNEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEEQFPDLVTA 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +    ++GGE+   L KV H +P LS+  +++ ++L++F  RI +       +S+ +
Sbjct: 61  ---DSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLVG----HSVAY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y  GK   A+ RG+G  GEDV+A  + I  IP+ L   +    EVR
Sbjct: 114 NVELKIDGLSLSLEYTDGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPEPL--TTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN E    G + +ANPRNAA+G LR+L+     +              
Sbjct: 172 GECYMEKEAFATLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ + +M  LGF  N   R+  +   +  + +E  + R+ L Y IDG+V KVD+
Sbjct: 232 RNITSQHQAIDEMNRLGFHTNQSGRRFESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G ++
Sbjct: 292 LSLQNELGNTVKVPRWEIAYKFPPEEQETVVRNIEWTVGRTGVVTPTAVMDPVKLAGTIV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN DY++            + +R+GD V + +AG++IP++  +++++R  D++P+
Sbjct: 352 SRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLSKRPKDSKPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG 
Sbjct: 401 EIPNVCPSCGETLVHLQDE------VALRCINPM-CPAQIEEGIIHFASRGAMNIMGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +            I   AD++ L   Q         +  F + S+TNL  SI   +  
Sbjct: 454 RIVKQLIDK----GFINDVADLYQLTPDQL------GQLDHFKEKSITNLLSSIENSKQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S E  ++ LGI HVGA+ AR + + Y + +  +Q               L  +  +G+ I
Sbjct: 504 SAELLLYGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIGETI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+++  ++  P     ++ L              E+   +  + K +V TG L    R +
Sbjct: 554 AESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSAFTRSE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +++
Sbjct: 614 FTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKIEK 668


>gi|284037426|ref|YP_003387356.1| DNA ligase, NAD-dependent [Spirosoma linguale DSM 74]
 gi|283816719|gb|ADB38557.1| DNA ligase, NAD-dependent [Spirosoma linguale DSM 74]
          Length = 696

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 202/734 (27%), Positives = 338/734 (46%), Gaps = 67/734 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+   ++  L   ++ ++  YYQ S   + D  +D L     A+ + +P+      P
Sbjct: 1   MNPEE---QIIDLTNRLNQYNFQYYQNSISEVDDFTFDKLLADLTALENQYPEF---RQP 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG ++     V H  P LSL   ++ EDL +F  R+ +        +  +  E
Sbjct: 55  DSPTARVGGTISKEFKTVYHRFPMLSLGNTYSEEDLIEFDKRVQKGLN---GQTYEYICE 111

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI------- 184
            K DG  +++ YE G  V  A RGDG  G+D++  IR I T+P  +              
Sbjct: 112 LKFDGVALSLTYENGVLVQGATRGDGVRGDDITNNIRTIRTVPLRIGAGHKATHTQPESA 171

Query: 185 ---------IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY 235
                     EVRGE ++   +F  +N E   +G    ANPRNAASG  ++ +   + + 
Sbjct: 172 PAVAALPALFEVRGEGFLPLAEFDRINKEREDIGEPLLANPRNAASGTFKQQDSGAVAKR 231

Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
                     +     +   E L  M   GF V+   R+      +++Y NE ++ R  L
Sbjct: 232 RLDCYLYSFLSDTDIFQTHEESLVAMNAWGFNVSPTWRKCTDIQEVMAYINEWETKRFDL 291

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           P   DG+V KV+ +  Q+ LG  A+SPRW I+ K+    AST L  I  Q+GRTG +TPV
Sbjct: 292 PLGTDGIVIKVNRYDQQRDLGYTAKSPRWAIAFKYKAMAASTELNGIQYQVGRTGAVTPV 351

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A L PV + G ++  A+LHN + I+ L            + + D V V++ GE+IPK+  
Sbjct: 352 ALLTPVLLAGTIVKRASLHNANEIERL-----------GVMMHDTVFVEKGGEIIPKITG 400

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           + +N R   +QP  +P+ CP C + +VR          A   C     C  Q+  R +HF
Sbjct: 401 VDLNRRTDKSQPIVYPTTCPACGTALVRKEGE------AHFYCPNEQGCPPQRQARFEHF 454

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           + R A NIE LG+ +++           ++ PAD++ L+        K+  +   G   V
Sbjct: 455 IQRRAMNIESLGEGKIELLIDR----GLVQTPADLYDLKATDLLGIEKVFLVEETGKKRV 510

Query: 536 TNLYDS--------INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
            +  +         I + ++      +F LGIR+VG   A  L  Y+ S           
Sbjct: 511 VSFREKTVENILTAIERSKSQPFANVLFGLGIRYVGNTTAEKLVDYFGSMDAIMNATQ-- 568

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSS 645
                     L+ VP  G  IA+++V ++ +  N   VE L       +G  +  +    
Sbjct: 569 --------EQLLAVPDTGPRIAESVVAWFGDTANQEFVERLRAAGLQFVGEKKVVEQEGD 620

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQL 704
            +  K  ++TGT     R + +  +   G  + + +S+K + +IVG+N G SK+EKA++L
Sbjct: 621 SLTGKTFLYTGTFANFSREELESRIEANGGKLLSGISKKLNYLIVGENAGPSKVEKAKKL 680

Query: 705 GVKIMNEEQFLFLL 718
            V ++ E++F+ +L
Sbjct: 681 NVPMIGEDEFMAML 694


>gi|294815250|ref|ZP_06773893.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
 gi|326443605|ref|ZP_08218339.1| NAD-dependent DNA ligase LigA [Streptomyces clavuligerus ATCC
           27064]
 gi|294327849|gb|EFG09492.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 767

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 228/742 (30%), Positives = 354/742 (47%), Gaps = 61/742 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR+  + L ++I  H   YY   +P+I DSE+D L R  + +    P L     P+ 
Sbjct: 47  PARARERHAELAEQIEEHRFRYYVKDQPVISDSEFDRLLRSLEELEERHPALC---TPDS 103

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G+    L KV H    LSL+  ++ E+L  +  R+ R     D +   F  E K
Sbjct: 104 PTQKVAGQYETDLAKVEHRERMLSLDNAFDEEELTAWAERVEREVGSPDFH---FLCELK 160

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YEKG+   AA RGDG  GED++  IR I  +P  L  +  PE++E+RGEVY
Sbjct: 161 VDGLAVNLTYEKGRLTRAATRGDGRIGEDITPNIRTIADVPDRLRGDRIPELVEIRGEVY 220

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
              + F  LN+  IA G +PYANPRN+ASG LR+ +P    T  L+  VHG+G       
Sbjct: 221 FPMDQFQQLNERRIAAGEQPYANPRNSASGSLRQKDPKVTATLPLHMVVHGIGAREGFDI 280

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                    +R  G P     R  ++  G+  +       R ++ ++IDG+V K+DE  L
Sbjct: 281 DCLSHAYDLLREWGLPTARHNRVVDSLEGVREFIAHYGENRHSMEHEIDGVVVKLDEIPL 340

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  AR+PRW I+ K+  ++ +TRL+DI + +GRTG +TP A++EPV + G+ +  A
Sbjct: 341 QGRLGSTARAPRWAIAWKYPPEEVNTRLVDILVGVGRTGRVTPYAQVEPVQVAGSEVEFA 400

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D +K            + + +GD V++++AG+VIP+++  +V  R    + F  P
Sbjct: 401 TLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVELRDGTEREFVMP 449

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +         +     RC    +C AQ  ERL +   R + +IE  G    
Sbjct: 450 AECPECGTELRPM-----KEGDVDLRCPNARSCPAQLRERLFYLAGRRSLDIEHFGYVAA 504

Query: 492 DFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI------------------------EN 526
               +  +PA   ++   D+F+L   Q                                N
Sbjct: 505 AALTRPLEPAEPPLKDEGDLFSLTVEQLLPIRAYVLDPDSKLPKRDPKTGEEKIATVFAN 564

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             G    +   +  +I   +   L R +  L IRHVG   A +LA+ + S Q   +    
Sbjct: 565 QEGEPRKNALAMLRNIEAAKTRPLARVLTGLSIRHVGPVAAEALAREFRSVQRIQEATE- 623

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVS 644
                      L     VG IIA ++ +++    +   +                E+   
Sbjct: 624 ---------EELAATEGVGAIIAASLKQWFAEEWHQEILRKWEAAGVRMAEEGADEEQGP 674

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TGTLQ   R  A+E +  LGA V+  +S+KT  ++VGDNPGSK +KA QL
Sbjct: 675 RPLEGVTVVVTGTLQDYTRDGAKEALQSLGAKVTGSVSKKTAFVVVGDNPGSKFDKAMQL 734

Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726
            V ++ E+ F  LL+Q     R
Sbjct: 735 KVPVLREDGFTLLLEQGPDAAR 756


>gi|306831054|ref|ZP_07464215.1| NAD-dependent DNA ligase LigA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426620|gb|EFM29731.1| NAD-dependent DNA ligase LigA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 652

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 223/701 (31%), Positives = 354/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L  E++ +   YY   +P + DSEYD L R    +  A P+L     PN P  +
Sbjct: 2   KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L +F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHETPLYSLQDAFSREELEEFDRRVK-----AEFPNASYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP    L  P  I VRGE Y+ K  
Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHK--LAQPLNITVRGEAYLPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N+E    G+  +ANPRNAA+G LR+LN T +    N       + +      Q ++
Sbjct: 172 FDKINEERRDSGQTEFANPRNAAAGTLRQLN-TVVVAKRNLATFLYQEVASTSMTTQNDV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+++   GF VN      ++   I  +  E+ + R  LPYDIDG+V KV+  ++Q++LG 
Sbjct: 231 LEELSRYGFSVNPRRITTSSMADIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++ ++R     P   P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKRDK-QVPMPIPESCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC   L C +Q  ERL HF SRDA NI GLG   +   FK+
Sbjct: 399 GSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKLFKA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           E     +   ADI+ L      S      + GF + S   LY++I   +  S ++ +F L
Sbjct: 452 E----LVHDVADIYQLTVEDLLS------LDGFKEKSAEKLYNAIQVSKENSADKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA+ +R L + + +                 D  S+  +  +G +IA ++  ++ 
Sbjct: 502 GIRHVGAKASRQLLEVFETIDQLVAA----------DADSIASIDGLGTVIANSLRSYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  +  L            + +  +++    +V TG L+++ R++A+E +  LGA 
Sbjct: 552 KKEATELLHELKNAGVNFAYLGKKVSKDAQLAGLTVVLTGKLERLTRNEAKEKLQDLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTDI++ G + GSKL KAQ LG+ + +E     L
Sbjct: 612 VTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDEAWLESL 652


>gi|254390812|ref|ZP_05006024.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
 gi|197704511|gb|EDY50323.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 730

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 228/742 (30%), Positives = 354/742 (47%), Gaps = 61/742 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR+  + L ++I  H   YY   +P+I DSE+D L R  + +    P L     P+ 
Sbjct: 10  PARARERHAELAEQIEEHRFRYYVKDQPVISDSEFDRLLRSLEELEERHPALC---TPDS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G+    L KV H    LSL+  ++ E+L  +  R+ R     D +   F  E K
Sbjct: 67  PTQKVAGQYETDLAKVEHRERMLSLDNAFDEEELTAWAERVEREVGSPDFH---FLCELK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YEKG+   AA RGDG  GED++  IR I  +P  L  +  PE++E+RGEVY
Sbjct: 124 VDGLAVNLTYEKGRLTRAATRGDGRIGEDITPNIRTIADVPDRLRGDRIPELVEIRGEVY 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
              + F  LN+  IA G +PYANPRN+ASG LR+ +P    T  L+  VHG+G       
Sbjct: 184 FPMDQFQQLNERRIAAGEQPYANPRNSASGSLRQKDPKVTATLPLHMVVHGIGAREGFDI 243

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                    +R  G P     R  ++  G+  +       R ++ ++IDG+V K+DE  L
Sbjct: 244 DCLSHAYDLLREWGLPTARHNRVVDSLEGVREFIAHYGENRHSMEHEIDGVVVKLDEIPL 303

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q +LG  AR+PRW I+ K+  ++ +TRL+DI + +GRTG +TP A++EPV + G+ +  A
Sbjct: 304 QGRLGSTARAPRWAIAWKYPPEEVNTRLVDILVGVGRTGRVTPYAQVEPVQVAGSEVEFA 363

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+D +K            + + +GD V++++AG+VIP+++  +V  R    + F  P
Sbjct: 364 TLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVELRDGTEREFVMP 412

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +         +     RC    +C AQ  ERL +   R + +IE  G    
Sbjct: 413 AECPECGTELRPM-----KEGDVDLRCPNARSCPAQLRERLFYLAGRRSLDIEHFGYVAA 467

Query: 492 DFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI------------------------EN 526
               +  +PA   ++   D+F+L   Q                                N
Sbjct: 468 AALTRPLEPAEPPLKDEGDLFSLTVEQLLPIRAYVLDPDSKLPKRDPKTGEEKIATVFAN 527

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
             G    +   +  +I   +   L R +  L IRHVG   A +LA+ + S Q   +    
Sbjct: 528 QEGEPRKNALAMLRNIEAAKTRPLARVLTGLSIRHVGPVAAEALAREFRSVQRIQEATE- 586

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVS 644
                      L     VG IIA ++ +++    +   +                E+   
Sbjct: 587 ---------EELAATEGVGAIIAASLKQWFAEEWHQEILRKWEAAGVRMAEEGADEEQGP 637

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E   +V TGTLQ   R  A+E +  LGA V+  +S+KT  ++VGDNPGSK +KA QL
Sbjct: 638 RPLEGVTVVVTGTLQDYTRDGAKEALQSLGAKVTGSVSKKTAFVVVGDNPGSKFDKAMQL 697

Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726
            V ++ E+ F  LL+Q     R
Sbjct: 698 KVPVLREDGFTLLLEQGPDAAR 719


>gi|296876694|ref|ZP_06900742.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC
           15912]
 gi|296432196|gb|EFH17995.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC
           15912]
          Length = 652

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 213/701 (30%), Positives = 353/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L + ++ +   YY    P + DSEYD L R    +  A PD      P  P ++
Sbjct: 2   KTRMKELVELLNRYAYEYYTKDTPSVSDSEYDQLYRELVELETAHPDEIL---PESPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+ +     + +SI +  E KIDG 
Sbjct: 59  VGGVVLKGFTKYQHQYPLYSLQDAFSREELEAFDQRVRK-----EFSSISYVCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GED++  ++ +  IP VL   +   I VRGE Y+ +  
Sbjct: 114 SISLTYENGVLVTGATRGDGSVGEDITENLKRVKDIPLVLPEPVN--ITVRGECYMPRAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q  +
Sbjct: 172 FDRVNQIRQENGEPEFANPRNAAAGTLRQLDTKIV-AKRNLATFLYQEVSPTDQSSQEGV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+K+  LGF VN     A     I  +  ++  +R  LPYDIDG+V KV++ ++Q++LG 
Sbjct: 231 LEKLARLGFVVNQERVLAEDMEQIWEFIQKVAQLREDLPYDIDGIVIKVNDLAVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W +++KF  ++   ++L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAVAYKFPAEEKEAKILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DI   D V+V +AG++IP V+ ++ ++R  D    + P+ CP C
Sbjct: 351 YI-----------AEKDIHQDDTVIVYKAGDIIPAVLRVVKDKRVSDQAL-AIPTQCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           QS ++   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 QSELLHFEDE------VALRCINPL-CPAQMKEGLNHFASRDAMNITGLGPAVVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   A I+ L      +      + GF + S   LY++I   +  S E+ +F L
Sbjct: 450 --AAQLVEDVAGIYRLTVEDLLT------LEGFKEKSAEKLYEAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG+++++ L + +      A            D   +  +  +G ++A+++  ++ 
Sbjct: 502 GIRHVGSKVSQILLQEFHDIDQLATA----------DPERIASIDSLGMVVAESLKSYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   ++ L +     +    +    + +    +V TG L+++ R +A+  +  LGA 
Sbjct: 552 QEGSKRLLQELKEASVNMVYLGEKVAADAALSGMTVVLTGKLERLTRSEAKAKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++ G + GSKL KAQ+LG+++ +E     L
Sbjct: 612 VTGSVSKKTDLVVAGSDAGSKLTKAQELGIQVEDEAWLESL 652


>gi|171059186|ref|YP_001791535.1| DNA ligase, NAD-dependent [Leptothrix cholodnii SP-6]
 gi|254781357|sp|B1Y6D4|DNLJ_LEPCP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|170776631|gb|ACB34770.1| DNA ligase, NAD-dependent [Leptothrix cholodnii SP-6]
          Length = 768

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 257/758 (33%), Positives = 375/758 (49%), Gaps = 91/758 (12%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
            ++ A    + L   + +H   YY    P + D+EYD L +   AI   +P L      +
Sbjct: 30  DLQTAAARAAWLRSTLQHHAHLYYVLDAPELPDAEYDRLFQELQAIEAMYPAL---RTAD 86

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKDD-NSIFFT 129
            P  ++ G++      V H++P LS+    + E      F  R+ R  +  DD   I + 
Sbjct: 87  SPTQRVLGQVRDGFVVVRHAVPMLSIRTETDTEASGAVAFDARVRRELELPDDAPPISYA 146

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-------- 181
            E K DG  I +RYE G  V AA RGDG SGEDV+  IR I  IP  L            
Sbjct: 147 TELKFDGLAINLRYEHGVLVQAATRGDGESGEDVTQNIRTIGQIPLRLRWAPTLGADAHS 206

Query: 182 -----------------------PEIIEVRGEVYISKNDFLALNDEMIAV------GRKP 212
                                  P ++EVRGEVY+ ++DF ALN+           G K 
Sbjct: 207 LPPEGARFALGRPGGETGAPDLAPAVLEVRGEVYMRRDDFEALNERQRERIARGDKGEKT 266

Query: 213 YANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNN 270
           + NPRNAA+G +R+L+P     R L+FF +GLG+            +L  +   G PV  
Sbjct: 267 FVNPRNAAAGAVRQLDPAIAAQRPLSFFAYGLGEVQGWALPHTHAGLLDALAAAGLPVCA 326

Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
                    G+V+++  + ++R +L +DIDG+VYKVD  +LQ++LG   R PRW ++HK+
Sbjct: 327 ERAVVQGADGLVAFHQRIGALRDSLAFDIDGVVYKVDSLALQQRLGFVTREPRWAVAHKY 386

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
             ++  TRLL I+IQ+GRTG LTPVARLEPV +GG  ++NATLHNED  +          
Sbjct: 387 PAQEQMTRLLGIEIQVGRTGKLTPVARLEPVFVGGTTVSNATLHNEDEARR--------- 437

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSF----CPICQSRVVRDL 445
             +D+RVGD V+V+RAG+VIP+VV +++ +R  D  +PF         CP+C S + R  
Sbjct: 438 --KDVRVGDTVIVRRAGDVIPQVVGVVLEQRPDDVGEPFDLYQRLGGRCPVCGSAIARPE 495

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                   A  RCTGGL C+AQ+ + + HF SR   +IEGLG + +D        A  IR
Sbjct: 496 GE------ADWRCTGGLFCAAQRKQAILHFASRRMMDIEGLGDKLVDQLVD----AGVIR 545

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
              +++ L         K+  +   G+ S  NL  ++ K +  +L RF+FSLGIR VG  
Sbjct: 546 TLPELYKL------GVAKLTALERMGEKSAVNLVAALEKSKQTTLARFLFSLGIRQVGEA 599

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A++LA+++ +                     L  VP VG I+A +I  F+  P N   V
Sbjct: 600 TAKALARHFGALDRVMDA----------SVDQLQAVPDVGPIVALSIRTFFDQPHNREVV 649

Query: 626 EALLKEV----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           E L                      +  K LV TGTL  + R  A++ +   G  VS  +
Sbjct: 650 EQLRAAGIHWAEHEASAAADAAELPLAGKTLVLTGTLPTLGRDAAKDLIEAAGGKVSGSV 709

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           S+KT  ++ G   GSKL+KA++LG+ I++E   L LL 
Sbjct: 710 SKKTHFVVAGAEAGSKLDKARELGLVILDEAGLLALLN 747


>gi|195953269|ref|YP_002121559.1| DNA ligase, NAD-dependent [Hydrogenobaculum sp. Y04AAS1]
 gi|254781349|sp|B4U8X0|DNLJ_HYDS0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|195932881|gb|ACG57581.1| DNA ligase, NAD-dependent [Hydrogenobaculum sp. Y04AAS1]
          Length = 700

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 244/719 (33%), Positives = 392/719 (54%), Gaps = 52/719 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            LS E+A K +++L + I+YHD  YY  ++P+I D+EYDA+ +   +I   +PDL     
Sbjct: 27  KLSKEEAIKIINTLRELINYHDYRYYVLNQPVISDAEYDAIYKFLKSIEDNYPDLI---T 83

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+    ++  +++ +  +V H  P LSL+  +N +DLR F  R+     K+    I + +
Sbjct: 84  PDSLTQRVSSDISSTFPQVKHLAPMLSLDNTYNEDDLRDFDRRVKELSGKEH---IEYCV 140

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVR 188
           EPK DG  I++ YE   FV  A RGDG  GEDV+  ++ I TIP   + +   I  +E+R
Sbjct: 141 EPKYDGAGISLLYENDLFVRGATRGDGEVGEDVTKNLKTIKTIPLRANFSKQGIRLLEIR 200

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGK 245
           GEV I+K+DF  +N+E +A    PYANPRN A+G +R  +P ++ +       +     +
Sbjct: 201 GEVIINKDDFKKINEERMAENLPPYANPRNLAAGSIRLQDPQEVVKRPLTALVYQITYVE 260

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
            +    K  Y  ++ +  LGF      ++       ++ Y    +S R +LPY+IDG+V 
Sbjct: 261 PTNNMPKTHYGAIKMLHDLGFKTPFLDMKLCKNIQEVIDYCRYFESKRESLPYEIDGMVI 320

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++ SL  +LG  + +PRW  + KF  KQA+T +LD+   +GR G +TPVA+LEPV++G
Sbjct: 321 KVNDISLYDELGFTSHAPRWATAFKFKAKQATTIILDVIFSVGRVGNITPVAKLEPVSLG 380

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  I++ +L NED+I+            +DI + D V+++RAGEVIP VV ++   R  D
Sbjct: 381 GVTISSVSLFNEDFIR-----------EKDIHIKDTVIIERAGEVIPYVVSVVKEARPKD 429

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+P  FP +CP C S++V+           A RC   ++C AQ + R++HF S+DA +I+
Sbjct: 430 AKPIVFPKYCPSCGSKLVKAPGE------VAWRCIN-ISCPAQVVLRIRHFASKDAMDIK 482

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG+      + ++     ++  ADI+ L        + +  +  F   S  NL D+I  
Sbjct: 483 GLGEAVAQLLYDAK----LVKNIADIYYL------KFSDLVRLPRFAKKSAQNLIDAIEA 532

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +   L R ++ LGIR+VG   A+ LA YY    N  +               L  +  +
Sbjct: 533 SKRRGLARVLYGLGIRYVGLTTAKKLASYYKDIWNIVKASE----------EDLRNIEDI 582

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           GDI+A++I EF+   +NI  ++ L +     +    + VS+++   + VFTGTL    R 
Sbjct: 583 GDIVARSIKEFFGLEQNINTIKRLEEAGVL-LKEVSEAVSNKLAGLQFVFTGTLSCCTRE 641

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            A++ V  LGA  S  ++  T  ++VG +PG +KL KA  LG+K ++EE+FL LL+   
Sbjct: 642 VARQMVESLGATTSDSVTHHTSYLVVGQDPGATKLRKANMLGIKTISEEEFLRLLEDSK 700


>gi|317153517|ref|YP_004121565.1| DNA ligase, NAD-dependent [Desulfovibrio aespoeensis Aspo-2]
 gi|316943768|gb|ADU62819.1| DNA ligase, NAD-dependent [Desulfovibrio aespoeensis Aspo-2]
          Length = 678

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 233/724 (32%), Positives = 379/724 (52%), Gaps = 59/724 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++  +     + L + I +H+  YY    P I D+EYDAL R   A+  A P+L   +D 
Sbjct: 1   MASSEIIDRAAWLRERIEHHNHRYYVLDDPEISDAEYDALFRELAALEAAHPEL---DDA 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GGE  +      H++   SL+    +++   F  R+ +   +   + + +  +
Sbjct: 58  NSPTRRVGGEPAVGFTPYEHALRMYSLDNAMALDEWFAFAERVSKGLGR---SEVAYWTD 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190
           PK+DG  + + YE G+ V AA RGDGH GEDV+  +R +  +P VL     P+++EVRGE
Sbjct: 115 PKMDGLAVEVIYEAGRLVRAATRGDGHIGEDVTHSMRTVMNLPLVLRGPDVPDLLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSE- 248
           V +S  DF A+N      G K +ANPRN A+G +R+L+P         F  +G+G+    
Sbjct: 175 VVMSNADFAAMNQRRREAGEKVFANPRNGAAGAVRQLDPKVAASRPLRFLAYGVGRVQWG 234

Query: 249 ---IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                   Q+E++  +  LGF V    +   +   +  Y+  +  +R+ LPY+IDG+V K
Sbjct: 235 SPLFAWTSQHEIMAGLARLGFAVPPEAKLCGSASEVADYFTRLMELRAGLPYEIDGVVAK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD   +Q+ LG  +R+PRW ++ KF   QA T L DI IQ+GRTG+LTPVA LEPV + G
Sbjct: 295 VDNLEMQRALGFTSRAPRWALALKFPAHQARTMLRDIRIQVGRTGVLTPVAELEPVPLAG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHN+ YI             RD R+GD VL++RAG+VIP+V+ + V +R   A
Sbjct: 355 VIVSNATLHNKGYI-----------AERDFRIGDTVLIQRAGDVIPQVLSVDVGQRPESA 403

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P+ FP+ CP+C             +   A RCT    C A+ ++R+ HFVS+   ++EG
Sbjct: 404 TPYEFPAICPVCGGEAR--------EDGEAVRCTNP-TCPAKTVQRIIHFVSKAGLDMEG 454

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G+  +    +       +  PAD+FTL +      T +    G GD S     ++I++ 
Sbjct: 455 VGRTWVRRLAED----GVLETPADLFTLDK------TALLRYEGMGDKSADKFIEAIDRA 504

Query: 546 RNISL-ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           R  +   R I  LGIRHVG + AR+LA  Y      AQ           D   L+ +  V
Sbjct: 505 RRTAPLWRLIAGLGIRHVGEQTARTLAARYRDLDALAQA----------DRDELLALDDV 554

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKE------VSPSIGRHEKNVSSEIENKKLVFTGTL 658
           G ++A+++  F+++      ++   +          +    +   ++ +  K  +FTG+L
Sbjct: 555 GPVVAESVHFFFRSEETRSLLQRFREADFWPLGGQTAANVADAAGNAPLAGKVFIFTGSL 614

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R +A+  V + G      +S+K D ++ GD  GSK+ KA++LG+ +++ + F+ LL
Sbjct: 615 PGMTRDQAKLLVEERGGAAVPSISKKVDYVVAGDKAGSKIAKAEKLGLTVIDFDGFMELL 674

Query: 719 QQYN 722
           Q  +
Sbjct: 675 QGQD 678


>gi|15672401|ref|NP_266575.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. lactis
           Il1403]
 gi|81538437|sp|Q9CIE4|DNLJ_LACLA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|12723294|gb|AAK04517.1|AE006278_8 DNA ligase [Lactococcus lactis subsp. lactis Il1403]
 gi|326405996|gb|ADZ63067.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis CV56]
          Length = 654

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 216/701 (30%), Positives = 352/701 (50%), Gaps = 49/701 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              ++  L ++++ +   YY   +P + DSEYD L +    +    P L R+   + P +
Sbjct: 3   IESKIKELTEKLNQYAYEYYTLDEPSVEDSEYDRLYQELVKLEAENPQLTRA---DSPTH 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           + GG +     K  H     SL  +++ E+L  +  R+ +     +  +  +  E KIDG
Sbjct: 60  RTGGVILDGFVKFRHPYNLYSLGDVFSREELAVWEERVRK-----EIANPEYICELKIDG 114

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +++ YE G  + AA RGDG +GE+++  ++ I  +P  L   I   I VRGE Y+ + 
Sbjct: 115 LSLSLYYENGLLMTAATRGDGTTGENITENVKRIKDVPLKLKEAI--DIVVRGEAYLPRK 172

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
           +F  LN E    G  P+ANPRNAA+G LR+L+   +            + S      Q E
Sbjct: 173 NFAKLNKERELEGATPFANPRNAAAGTLRQLDTKIV-AKRGLATFLYQEASPATNDTQEE 231

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+    LGF VN   + A     I  +  E   +R  LPYDIDG+V KV+  + Q++LG
Sbjct: 232 VLEYFEELGFQVNPERKFARNMDEIWEFIEEATRLRDELPYDIDGVVVKVNNLAEQEELG 291

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  +QA T +L +D  +GRTG++TP A + PV +    +  ATLHN 
Sbjct: 292 FTVKAPRWAIAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTPVLLAQTTVARATLHNV 351

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DIR+GD VL+ +AG++IPKV  +++++R    +    P+ CP 
Sbjct: 352 DYIE-----------EKDIRIGDHVLIYKAGDIIPKVGKVLLDKRPEGLEGLEIPTKCPE 400

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++   +        A RC   L C AQ  E+L HF SRDA NI GLG   +   F 
Sbjct: 401 CGSELIHFEDE------VALRCVNPL-CPAQIREKLIHFASRDAMNIVGLGPSVISQLFD 453

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     +   AD++ L      +      +    +     +  +I + R  S E+ +F 
Sbjct: 454 KK----LVADVADLYQLTIEDLLT------LDKVKETLAQKIVSAIAQSRENSAEKLLFG 503

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG + A+ L + + + +  ++               +  +P +G +IA A+V ++
Sbjct: 504 LGIRHVGGKAAKLLLERFANLRALSKATE----------EEISEIPSLGGVIATAVVSYF 553

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +       ++ L             N+   +  K +V TG L  ++R +A+E +  LGA 
Sbjct: 554 ETDGAKILLDELENAGVNFDYLGAVNIEGILSGKTVVLTGKLTTLKRSEAKEKLEALGAN 613

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VS  +S+KTD+++ G+  GSKL KAQ LG++I +E+  L L
Sbjct: 614 VSGSVSKKTDLVVAGEEAGSKLTKAQDLGIEIWSEQDLLDL 654


>gi|315613211|ref|ZP_07888121.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis ATCC 49296]
 gi|315314773|gb|EFU62815.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis ATCC 49296]
          Length = 652

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 212/700 (30%), Positives = 358/700 (51%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   ERMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEL-----PQPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVVGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q ++L
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A +   I  +  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 EHLEQLGFVVNPKRILAESMDEIWDFIQEVGQEREKLPYDIDGVVIKVNDLAGQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCD 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S+++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SQLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ L+            + G  + S + LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLKEDDF------LLLEGVKEKSASKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +++ S +N AQ           D   +  +  +G +IAQ++  ++  
Sbjct: 503 IRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGSVIAQSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   ++ L +       +       + +    +V TG L+++ R +A+  +  LGA V
Sbjct: 553 EGSNILLDELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLTRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KT++++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSVSKKTNLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652


>gi|315083671|gb|EFT55647.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL027PA2]
          Length = 740

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 211/746 (28%), Positives = 339/746 (45%), Gaps = 74/746 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
             AR   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P
Sbjct: 18  AAARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSP 74

Query: 75  LNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G          V H    LSL+ ++  ++L +++ R+     K  +    F  E K
Sbjct: 75  TQRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELK 130

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           IDG  + + Y  G+ V  A RGDG  GEDV+A +R I  IPR L+ +     +EVRGEV+
Sbjct: 131 IDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVF 190

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
               DF  LN  +I  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G       
Sbjct: 191 FPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDF 250

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q     K+   G PV+   +       +  +       R    + IDG+V KVD+ SL
Sbjct: 251 PSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGESRDEASHQIDGVVVKVDDVSL 310

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  A
Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEMA 370

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P
Sbjct: 371 TLHNAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +  + N          RC     C +Q  ER+    SR A +IE LG +  
Sbjct: 420 DHCPSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474

Query: 492 DFFFKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIE 525
                 E+                       A    +  D        +RR+        
Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGPW 534

Query: 526 NILGFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
            +  +                   ++D + K ++  L R + +L IRHVG   AR+LA +
Sbjct: 535 QLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +   +               L  V  VG+IIA+++  +++   +   +        
Sbjct: 595 FGSVEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N
Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GSK  KA+ LG  I++E  F +LL+
Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLE 730


>gi|146321044|ref|YP_001200755.1| NAD-dependent DNA ligase LigA [Streptococcus suis 98HAH33]
 gi|253751920|ref|YP_003025061.1| DNA ligase [Streptococcus suis SC84]
 gi|253753743|ref|YP_003026884.1| DNA ligase [Streptococcus suis P1/7]
 gi|253755379|ref|YP_003028519.1| DNA ligase [Streptococcus suis BM407]
 gi|166216248|sp|A4W1W6|DNLJ_STRS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145691850|gb|ABP92355.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Streptococcus suis 98HAH33]
 gi|251816209|emb|CAZ51836.1| DNA ligase [Streptococcus suis SC84]
 gi|251817843|emb|CAZ55596.1| DNA ligase [Streptococcus suis BM407]
 gi|251819989|emb|CAR46142.1| DNA ligase [Streptococcus suis P1/7]
 gi|292558495|gb|ADE31496.1| NAD-dependent DNA ligase [Streptococcus suis GZ1]
 gi|319758281|gb|ADV70223.1| NAD-dependent DNA ligase LigA [Streptococcus suis JS14]
          Length = 652

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 211/701 (30%), Positives = 359/701 (51%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +S L   ++ +   YYQ  +P + D+EYD L R    +  A P+L     P+ P ++
Sbjct: 2   KTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELIL---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG+M     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG 
Sbjct: 59  VGGKMLDGFEKYSHVYPLFSLQDAFSREELEAFDQRVRK-----EFPQATYICELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GE+++  ++ +  +P  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEAGNLVVGATRGDGSVGENITENLKRVADVPLTLPEAV--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N +    G   + NPRNAA+G LR+L+   +            + S   A  Q ++
Sbjct: 172 FDRVNKQRQEAGEAEFVNPRNAAAGTLRQLDTGVV-AQRGLATFLYQEASPSEATSQSQV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+K+  LGF  N+    A +      +  ++   R  LPY+IDG+V KV++ ++Q++LG 
Sbjct: 231 LEKLDALGFVTNHEYCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW +++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAVAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++   R         PS CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLKVVDKYRKEQEI-MPIPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           QS +    +        A RC   + C +Q + +L+HF SRDA NI GLG   ++  F  
Sbjct: 399 QSDLQHYEDE------VALRCINPI-CPSQLMSKLEHFASRDAMNIAGLGSSIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L      +      + GF + S   LY +I   ++ S E  +F L
Sbjct: 450 --GAGLVHDVADIYKLTVDDLLT------LEGFKEKSANKLYQAIQTSKSNSAECLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L + +   +  A            D  ++  +  +G +IA+++  F+ 
Sbjct: 502 GIRHVGSKASKILVEKFGDLETLAFA----------DQEAIASLEGLGQVIAKSLTTFFA 551

Query: 618 NPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +      +  L +  V+ +      + ++ +    +V TG L++++R++A+  +  LGA 
Sbjct: 552 SEGAQQLLAELKEAKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KT++++ G + GSKL KAQ+LG++I +E     L
Sbjct: 612 VAGSVSKKTNLVVAGTDAGSKLTKAQELGIEIKDEAWLESL 652


>gi|281490961|ref|YP_003352941.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis KF147]
 gi|281374719|gb|ADA64239.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis KF147]
          Length = 654

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 216/701 (30%), Positives = 352/701 (50%), Gaps = 49/701 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              ++  L ++++ +   YY   +P + DSEYD L +    +    P L R+   + P +
Sbjct: 3   IESKIKELTEKLNQYAYEYYTLDEPSVEDSEYDRLYQELVKLEAENPQLTRA---DSPTH 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           + GG +     K  H     SL  +++ E+L  +  R+ +     +  +  +  E KIDG
Sbjct: 60  RTGGVILDGFVKFRHPYNLYSLGDVFSREELAVWEERVRK-----EIANPEYICELKIDG 114

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +++ YE G  + AA RGDG +GE+++  ++ I  +P  L   I   I VRGE Y+ + 
Sbjct: 115 LSLSLYYENGLLMTAATRGDGTTGENITENVKRIKDVPLKLKEAI--DIVVRGEAYLPRK 172

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
           +F  LN E    G  P+ANPRNAA+G LR+L+   +            + S      Q E
Sbjct: 173 NFAKLNKERELEGAAPFANPRNAAAGTLRQLDTKIV-AKRGLATFLYQEASPATNDTQEE 231

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+    LGF VN   + A     I  +  E   +R  LPYDIDG+V KV+  + Q++LG
Sbjct: 232 VLEYFEELGFQVNPERKFARNMDEIWEFIEEATRLRDELPYDIDGVVVKVNNLAEQEELG 291

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  +QA T +L +D  +GRTG++TP A + PV +    +  ATLHN 
Sbjct: 292 FTVKAPRWAIAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTPVLLAQTTVARATLHNV 351

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+            +DIR+GD VL+ +AG++IPKV  +++++R    +    P+ CP 
Sbjct: 352 DYIE-----------EKDIRIGDHVLIYKAGDIIPKVGKVLLDKRPEGLEGLEIPTKCPE 400

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++   +        A RC   L C AQ  E+L HF SRDA NI GLG   +   F 
Sbjct: 401 CGSELIHFEDE------VALRCVNPL-CPAQIREKLIHFASRDAMNIVGLGPSVISQLFD 453

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     +   AD++ L      +      +    +     +  +I + R  S E+ +F 
Sbjct: 454 KK----LVADVADLYQLTIEDLLT------LDKVKETLAQKIVSAIAQSRENSAEKLLFG 503

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG + A+ L + + + +  ++               +  +P +G +IA A+V ++
Sbjct: 504 LGIRHVGGKAAKLLLERFANLRALSKATE----------EEISEIPSLGGVIATAVVSYF 553

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +       ++ L             N+   +  K +V TG L  ++R +A+E +  LGA 
Sbjct: 554 ETDGAKILLDELENAGVNFDYLGAVNIEGILSGKTVVLTGKLTTLKRSEAKEKLEALGAN 613

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VS  +S+KTD+++ G+  GSKL KAQ LG++I +E+  L L
Sbjct: 614 VSGSVSKKTDLVVAGEEAGSKLTKAQDLGIEIWSEQDLLDL 654


>gi|331266328|ref|YP_004325958.1| DNA ligase, NAD-dependent [Streptococcus oralis Uo5]
 gi|326683000|emb|CBZ00617.1| DNA ligase, NAD-dependent [Streptococcus oralis Uo5]
          Length = 652

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 211/700 (30%), Positives = 357/700 (51%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   ERMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEL-----PQPTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVVGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q ++L
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A     I  +  E++  R  LPYDIDG+V KV+  + Q++LG  
Sbjct: 232 KHLEQLGFVVNPKRILAENIDEIWDFIQEVEQERDNLPYDIDGVVIKVNNLAGQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRISEEKL-DIPTNCPSCD 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S+++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F + 
Sbjct: 400 SQLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFATN 452

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                ++  ADI+ L+            + G  + S + LY +I   +  S E+ +F LG
Sbjct: 453 ----LVKDVADIYRLKEEDF------LLLEGVKEKSASKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +++ S +N AQ           D   +  +  +G +IAQ++  ++  
Sbjct: 503 IRHVGSKASQLLLQHFHSIKNLAQA----------DPEEVASIESLGSVIAQSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   ++ L +       +       + +    +V TG L+++ R +A+  +  LGA V
Sbjct: 553 EGSKILLDELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLTRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KT++++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSVSKKTNLVVAGADAGSKLQKAQELGIEVRDEAWLEGL 652


>gi|260655066|ref|ZP_05860554.1| DNA ligase, NAD-dependent [Jonquetella anthropi E3_33 E1]
 gi|260630177|gb|EEX48371.1| DNA ligase, NAD-dependent [Jonquetella anthropi E3_33 E1]
          Length = 670

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 222/712 (31%), Positives = 346/712 (48%), Gaps = 49/712 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R     L + ++ +   YY    P++ D E+D L     +I    PD  R   P+ P  +
Sbjct: 4   RARYDELVETVNENSYLYYVKDAPVLSDFEWDQLMNELLSIEREHPDWIR---PDSPSRR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG    +  KVTH IP LSLE +++ E+L  ++    +    +      +  E KIDG 
Sbjct: 61  VGGTALDAFEKVTHQIPMLSLEDVFSPEELTGWLAHAEKEIGSQS----EWCCELKIDGL 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y+ G FV  A RGDGH GEDV+A +R + ++P  L  ++P ++EVRGEVY+ K  
Sbjct: 117 AISLIYQDGVFVRGATRGDGHVGEDVTANLRTVRSLPLKLRGSVPGLLEVRGEVYMDKTS 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F ALN      G   +ANPRN A+G LR+L+PT    R L  F++ +    E   + Q +
Sbjct: 177 FEALNRRREEAGEALFANPRNVAAGSLRQLDPTVTSQRNLQVFLYYVMNPHERGFETQSD 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  M  +G PV    R +        +  E +  R  L Y  DG+V+K ++      L 
Sbjct: 237 CLNWMASVGLPVQPAWRVSRGTAEAAQFVEEWRDRRFDLSYGTDGVVFKANKLFDWDLLS 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW ++ K+  ++ +  L  ID+ +GRTG++TPVA  +PV + G  ++ A+LHN 
Sbjct: 297 ATSRTPRWAVAFKYPPEEKTVHLDAIDVSVGRTGVITPVAIFQPVVLSGTNVSRASLHNG 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I             +DIRVGD + V++AGE+IP+VV    + R     PF  P  CP 
Sbjct: 357 GEIAR-----------KDIRVGDWITVRKAGEIIPEVVKSDASRRDGTQTPFIMPERCPS 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C   VV+          AA RC   ++C AQ L RL HF SR A ++ GLG+        
Sbjct: 406 CGHPVVQLQGE------AALRC-QNVSCPAQMLARLVHFASRGAMDVRGLGEALAQQLLS 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           S      +   AD++ L   Q         +   G+ S ++L  ++   +   L+R + +
Sbjct: 459 SR----LVVTLADLYRLTADQLAG------LERMGEKSASSLVQALEGAKKRPLDRLLVA 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  VG   AR+L   + S +   Q               L +V  +G  IA ++  + 
Sbjct: 509 LGIPLVGPSAARALVGRFGSLEAIGQATE----------DELSKVEGIGPAIAGSVASWL 558

Query: 617 QNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            +  N   ++           S    +         + +VFTG +  + R +A E    L
Sbjct: 559 ADSANRALLQDFSSLGLEACTSREPTQPAQPGPWTGQVIVFTGEMASMPRSQASELARGL 618

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           GA V+  +S KT +++ G+  GSKL+KA  LG+ +++EE+FL  LQ   +TL
Sbjct: 619 GAKVTGSVSSKTTLLVAGEAAGSKLDKANSLGIPVISEEEFLSRLQAAKSTL 670


>gi|320546461|ref|ZP_08040776.1| NAD-dependent DNA ligase LigA [Streptococcus equinus ATCC 9812]
 gi|320448846|gb|EFW89574.1| NAD-dependent DNA ligase LigA [Streptococcus equinus ATCC 9812]
          Length = 652

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 222/701 (31%), Positives = 350/701 (49%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L  E++ +   YY   +P + DSEYD L R    +  A P+L     PN P  +
Sbjct: 2   KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRVK-----AEFPNASYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G     A RGDG  GE+++  ++ I  IP    L  P  I VRGE Y+ K  
Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHK--LAQPLNITVRGEAYLPKTS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N+E    G+  +ANPRNAA+G LR+LN   +    N       + +      Q  +
Sbjct: 172 FDKINEERRDSGQTEFANPRNAAAGTLRQLNTAVV-AKRNLATFLYQEVASTSMTTQNNV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+++   GF VN      ++   I  +  E+ + R  LPYDIDG+V KV+  ++Q++LG 
Sbjct: 231 LEELSRFGFSVNPRRITTSSMADIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++ ++R     P   P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKRDK-QVPMPIPESCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC   L C +Q  ERL HF SRDA NI GLG   +   FK+
Sbjct: 399 GSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKLFKA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           E     +   ADI+ L      S      + GF + S   LY++I   +  S ++ +F L
Sbjct: 452 E----LVHDVADIYQLTVEDLLS------LDGFKEKSAEKLYNAIQVSKENSADKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA+ +R L + + +                 D  S+  +  +G +IA ++  ++ 
Sbjct: 502 GIRHVGAKASRQLLEVFETIDQLVAA----------DADSIASIDGLGTVIANSLRSYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  +  L            +    +++    +V TG L+++ R++A+E +  LGA 
Sbjct: 552 KKEATELLHELKNVGVNFAYLGKKVPKDAQLAGLTVVLTGKLERLTRNEAKEKLQDLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTDI++ G + GSKL KAQ LG+ + +E     L
Sbjct: 612 VTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDEAWLESL 652


>gi|239638039|ref|ZP_04678998.1| DNA ligase, NAD-dependent [Staphylococcus warneri L37603]
 gi|239596322|gb|EEQ78860.1| DNA ligase, NAD-dependent [Staphylococcus warneri L37603]
          Length = 668

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 239/716 (33%), Positives = 374/716 (52%), Gaps = 53/716 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + + +  ++ L   ++ +   YY    P + DSEYD L      I    P+      P+ 
Sbjct: 1   MSELQNRVNDLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIHIESEHPEFK---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRENIG-----NVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  +   +    EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--FEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   ++  A 
Sbjct: 171 PRKSFMNLNEEKEKNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSIFLYSINDFTDFEAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q   L ++  LGF  N+   + +   G++ Y  +  + R  LPYDIDG+V KV++   Q
Sbjct: 231 TQSGALDELDELGFKTNHERERVSDIDGVLKYIEKWTAEREMLPYDIDGIVIKVNDLEQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            ++G   +SPRW I++KF  ++  T LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEEVVTELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I++ R  DA+ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVRSIIDRRPEDAETYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLIEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++++     I+  ADIF            +  +   G   V NL ++I + ++ SLE 
Sbjct: 453 QLYEND----LIKDVADIF------YLEEEDLLPLERMGSKKVENLLEAIKQAKSQSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + +R LA+ Y +                     LI +  +G  +AQ++
Sbjct: 503 LLFGLGIRHLGVKASRVLAEKYETMDRLLTVTE----------EELIAIHDIGGKLAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SE-IENKKLVFTGTLQKIQRHKAQE 668
           V + +N      ++ L  +      +  K            K +V TG L+++ R++A +
Sbjct: 553 VTYLENDDIRALIQKLKDKDVNMTYKGVKTTEIEGHPDFSGKTIVLTGKLEQMTRNEASQ 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           ++   GA V+  +++ TDI+I G + GSKL KA++ G +I  EE+F     + N  
Sbjct: 613 WLQMQGAKVTNSVNKSTDILIAGADAGSKLTKAEKFGTEIWTEEEFATKQNEINNE 668


>gi|295836378|ref|ZP_06823311.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB74]
 gi|295825992|gb|EDY45591.2| DNA ligase, NAD-dependent [Streptomyces sp. SPB74]
          Length = 818

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 215/741 (29%), Positives = 352/741 (47%), Gaps = 66/741 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + R+E S + +E+  H   YY   +P++ D+++DAL RR  A+    P L     P+ 
Sbjct: 49  PAEVREEHSRVAREVDEHRYRYYVNDQPVVSDADFDALLRRLTALEEEHPQL---RTPDS 105

Query: 74  PLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           P  K+ G+         V H    LSL+ +++ E L  +  R+ +       +   +  E
Sbjct: 106 PTQKVAGDYQQFTPFASVEHRERMLSLDNVFDDEGLAAWAERLAKEVGAPGYH---YLCE 162

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190
            K+DG  + + YE G+   AA RGDG  GED++  +R I  IP  L+    PE++EVRGE
Sbjct: 163 LKVDGLAVNLTYENGRLTRAATRGDGRVGEDITPNVRTISDIPEQLAGERVPELVEVRGE 222

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY    DF ALN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G     
Sbjct: 223 VYFPMEDFEALNARLVDAGEKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREGF 282

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                    + +   G P     + A++  G+ S+       R ++ ++IDG+V K+DE 
Sbjct: 283 TIDRLSHAYELLHEWGLPTAKHNKVADSLDGVRSFIRYYGEHRHSVEHEIDGVVVKLDEI 342

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ +LG  +R+PRW  + KF  ++ +T+L+DI + +GRTG +TP A +EP+ + G+ + 
Sbjct: 343 PLQGRLGSTSRAPRWATAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPIVVAGSEVE 402

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+D +K            + + +GD V++++AG+VIP+++  + + R    + F 
Sbjct: 403 FATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSERAFV 451

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +         +     RC    +C AQ  ER+ +   R + +IE LG  
Sbjct: 452 MPAECPECGTPLRAM-----KEGDIDLRCPNARSCPAQLRERIFYLAGRKSLDIEHLGYV 506

Query: 490 QLDFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI------------------------ 524
                 +  +P+   +R   D+F L   +                               
Sbjct: 507 AATALTQPLEPSEPPLRDEGDLFDLTAEELLPIRSYVLDQDSGLPKRDPVTGEEKIVTFF 566

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
            N  G    +  ++ ++I   +   L + +  L IRHVG   A +LA+ + S        
Sbjct: 567 ANKEGVAKKNALSMLENIEAAKQRPLAQILTGLSIRHVGPVAAAALAREFRSIDRIFAAE 626

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QNPRNICAVEALLKEVSPSIGRHEK 641
            N           L     VG  IA ++ ++Y   +N  +   +               +
Sbjct: 627 EN----------ELAETEGVGPTIAASLKQWYDAEENDWHREILRKWKAAGVRMEADESE 676

Query: 642 NVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
             S    +E   +V TGTL++  R  A+E +   GA V+  +S+KT  ++VGDNPGSK +
Sbjct: 677 TDSGPRPLEGLTVVVTGTLERWTRDAAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYD 736

Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720
           KA  L V ++ E+ F  LL Q
Sbjct: 737 KALSLKVPVLEEDGFAILLDQ 757


>gi|72383117|ref|YP_292472.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL2A]
 gi|123746237|sp|Q46IA9|DNLJ_PROMT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|72002967|gb|AAZ58769.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL2A]
          Length = 690

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 220/720 (30%), Positives = 355/720 (49%), Gaps = 59/720 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L   ++  +  YY    P I DS YD L R    I +  P L      + P  ++
Sbjct: 10  ERIKELRALLNKANYSYYVLDSPEIDDSVYDQLYRELIEIENIHPSLITD---DSPSQRL 66

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW-----QKKDDNSIFFTLEPK 133
           GG  +     V H+IP LSL+  +N+ ++  +  RI +         K         E K
Sbjct: 67  GGVPSKGFKNVEHNIPLLSLDNAFNLNEVEAWYGRISKLISSENKNIKKVYDPELICELK 126

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVY 192
           IDG  I++RYE G    A  RGDG +GED++  IR I TIP  L   N P  +E+RGE +
Sbjct: 127 IDGNAISLRYENGILTRATTRGDGKTGEDITTNIRTISTIPLRLLLENPPLWVEIRGEAF 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251
           +  N F  LN E     +  +ANPRN+ +G LR+L+P    +R L+FF + L        
Sbjct: 187 MPNNIFNKLNIERKNNDQPLFANPRNSCAGTLRQLDPKIVASRKLDFFAYSLYFPENWEP 246

Query: 252 KG--------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                     Q E L+ ++ +GF VN       T +    YY   +  +  L Y  DG+V
Sbjct: 247 TDNNFKKPISQSESLEFLKNIGFKVNTTYETTKTLNEANKYYKYWEVKKDFLAYATDGIV 306

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+D+F +Q  LG   ++PRW I+ K+  ++ +T+L  I  Q+GR+G +TPVA  E + +
Sbjct: 307 VKIDKFEIQNLLGATNKAPRWAIAVKYPAEEKATKLRKIIFQVGRSGAVTPVAEFESIEL 366

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  ATLHN   +  L           D+   D ++V++AGE+IP+V+ +I   R  
Sbjct: 367 AGTSVNRATLHNAKRLASL-----------DLHYEDTIIVRKAGEIIPEVIRVIKEFRKV 415

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DA+    P  CP C S+++ + N       A  +C     C+A+    L+H+VS+ + NI
Sbjct: 416 DAKLVQLPQNCPECNSKLILESNE------AITKCINYR-CAAKLKGLLRHWVSKGSMNI 468

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG++ ++           ++  AD++ L+         +  +  FG+ S  NL   IN
Sbjct: 469 DGLGEKIINQLVNE----GYVKSIADLYKLE------IDSLLELERFGEKSANNLLIEIN 518

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + +N +  + ++ LGI H+G   A+SL+  + S +          A   +    +  +  
Sbjct: 519 ESKNKNWHKQLYGLGIPHIGEANAKSLSNNFNSIEEL-------NAIAKESPEKISNIYG 571

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-----EKNVSSEIENKKLVFTGTL 658
            G+ +  AIV+++ +  N   ++ L K +  S+          N S+  + K  V TGTL
Sbjct: 572 FGNEMKDAIVKWFDDSNNQTLIKEL-KAIGFSLKESLDSNYNSNQSNVFDGKSFVLTGTL 630

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + R +A+E +   G  VS+ +S+KTD ++ G+  GSKL KAQ+LGVKI+NE +   LL
Sbjct: 631 DSLTRDEAKELIESAGGKVSSSISKKTDFLVSGEKAGSKLNKAQELGVKIINENELKLLL 690


>gi|159904348|ref|YP_001551692.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus str. MIT
           9211]
 gi|254781392|sp|A9BDC5|DNLJ_PROM4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|159889524|gb|ABX09738.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Prochlorococcus marinus str. MIT 9211]
          Length = 697

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 216/734 (29%), Positives = 364/734 (49%), Gaps = 62/734 (8%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
             +     K    L + ++  +  YY    P++ D+ YD L R    I    P L  +  
Sbjct: 2   EQNSSNLSKRSFELRKLLNRANHAYYVLDTPLMEDTVYDRLYRELLNIEKNHPSLITA-- 59

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NS 125
            + P  ++G        KV H IP +SL+  +N E+L+ +  RI +   +K++      S
Sbjct: 60  -DSPSQRLGSTPAKEFVKVEHKIPLMSLDNAFNFEELQDWDLRIRKLLNQKNNFGILKTS 118

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEI 184
           I F  E KIDG+ + + Y  G  V AA RGDG +GE+++A ++ I +IP  L   N P  
Sbjct: 119 IDFACELKIDGSALALSYANGVLVQAATRGDGVAGEEITANVKTITSIPLSLDIENPPSW 178

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL 243
           +EVRGE ++ K  F  +N          +ANPRNA +G LR+L+P    +R L+FF + +
Sbjct: 179 LEVRGEAFLPKQTFDGINLLRKQQREALFANPRNACAGTLRQLDPQIVASRQLDFFAYKM 238

Query: 244 GKTSEIFAKGQYEMLQ--------KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
               +   +G+              ++  GF VN   +   + H + S+++  +  R  L
Sbjct: 239 YLPKDWDPQGENIHQPEAQDAALKWLKKAGFKVNPNTKIFKSLHEVQSFFDIWEKKRHKL 298

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           PY  DG+V KV+ F LQ+ LG   +SPRW I+ K+  ++A T+L+++  Q+GRTG +TPV
Sbjct: 299 PYTTDGVVVKVNNFKLQEMLGVTQKSPRWAIALKYPAEEAPTKLINLSYQVGRTGTVTPV 358

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A  EP+ + G ++  ATLHN D ++ L           D+   D ++V++AGE+IP+VV 
Sbjct: 359 AEFEPIPLAGTIVRKATLHNADRLQSL-----------DLHNEDTIVVRKAGEIIPEVVC 407

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           ++   R  ++     PS CP C  ++        G   AA +C   L C A     L+H+
Sbjct: 408 VLKELRPQNSTRLYLPSNCPECDEKL------VRGTDQAATKCVNNL-CPAIIQGALRHW 460

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           VS+ A NI+G+G + ++           ++   D++ L  +          +   G+ S 
Sbjct: 461 VSKKAMNIDGVGSKVIEQLVNK----GIVKSIPDLYELNYQMLFG------LERMGEKSA 510

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
             + +SI K +     + ++ LGI H+G   A+ LA  + S    +    N         
Sbjct: 511 HKVIESIEKSKTQPWNKQLYGLGILHIGEGNAKLLANAFASEDELSHAAIN-------SP 563

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP---------SIGRHEKNVSSE 646
             + ++  +G+ + +++ E++++  N   +  L +             +I     + + E
Sbjct: 564 ERIAKIHGIGNEMVESLQEWFEDESNQRIISRLKELGVQLKSTANDSGAIKSVINSSNKE 623

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K+ V TGT++ I R  AQE + + G  V++ +S KT  +I G NPGSKL KA++LG+
Sbjct: 624 VLGKRFVLTGTMESINRDVAQEMIEKAGGKVNSSISSKTTYLITGSNPGSKLSKAKELGI 683

Query: 707 KIMNEEQFLFLLQQ 720
           KI+NEE F  LL +
Sbjct: 684 KIINEEDFFNLLSK 697


>gi|119356312|ref|YP_910956.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides DSM 266]
 gi|166215573|sp|A1BDQ5|DNLJ_CHLPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119353661|gb|ABL64532.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides DSM 266]
          Length = 676

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 222/718 (30%), Positives = 365/718 (50%), Gaps = 53/718 (7%)

Query: 12  LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           +S     RK +  L +EI+ H+  YY  ++P I D E+D L  R   +  AFPD      
Sbjct: 1   MSDAVNVRKAIEELRREINRHNTLYYVDARPEISDYEFDRLMERLIELEKAFPDFV---T 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P+ P +++GG +      V H  P LSL   +++ ++  F +R+ +    +         
Sbjct: 58  PDSPSHRVGGAITREFPSVRHREPMLSLSNTYSLAEVEDFYSRVKKLLLVEGVREQDMAA 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-------LNIPE 183
           E K DG  I++ Y  G  V  A RGDG  G+D++  ++ + ++P  +          I  
Sbjct: 118 ELKFDGVAISLLYRDGLLVQGATRGDGTEGDDITTNLKTLSSVPLRIPLTSLPVIEGIER 177

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHG 242
            IE+RGEV++ K+DF  LN+         +ANPRNA +G L+  +  +   R LNF  + 
Sbjct: 178 DIEIRGEVFMQKDDFARLNEARPE--EDRFANPRNATAGTLKLQDSGEVARRRLNFVAYY 235

Query: 243 LGKTSEIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           L  +S+      QY+ L+ +  LGF      R       I  +       R  LPY+ DG
Sbjct: 236 LRLSSQDSFLLTQYDRLELLGQLGFFTGKHYRLCRDMKEIGDFIGYWAVERWNLPYETDG 295

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V K+++ +L  ++G  A+SPRW I++K+  +QA T L  +  Q+GR G +TPVA LEPV
Sbjct: 296 VVLKLNDVALWPRIGATAKSPRWAIAYKYPAQQAKTVLQGVAFQVGRLGTVTPVAELEPV 355

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ ++ +TLHN D I+ L            + + DRV+++++GEVIPKV+ ++++ER
Sbjct: 356 RLAGSTVSRSTLHNFDEIERL-----------GLMLHDRVIIEKSGEVIPKVIRVVLDER 404

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             +A+P   PS CP C + + +  N        ++ C    +C AQ   RL HF SR+A 
Sbjct: 405 PENAEPVGVPSVCPECGASLEKPENE------VSYYCPDQDSCPAQIRGRLLHFASRNAL 458

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I+ LG+  +    +       +R   D++ LQ+ Q      +E +   G  S  NL  +
Sbjct: 459 DIQSLGESLVAQLVQK----GLVRDAGDLYLLQQPQ------LEALERMGRKSAHNLLRA 508

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           + + R  S ER +++LGIRHVG   AR LA+ Y + +                   L  V
Sbjct: 509 LQESREKSYERLLYALGIRHVGQATARELARAYETVEALQNASE----------EELATV 558

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS-IGRHEKNVSSEIENKKLVFTGTLQK 660
           P VG ++A ++ +++        +  L     P      +K ++   E   ++FTG L++
Sbjct: 559 PDVGPVVAHSVKDYFSKSSTQMLLRKLRDAGFPLRFTGPQKLINRNFEGVNVLFTGALER 618

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             R +A E V Q G  V   +SR T +++ G  PGSKL+KA++LGVK+++E++F  +L
Sbjct: 619 YGRQQASELVQQRGGRVVGSVSRSTGVVVAGSEPGSKLDKARKLGVKVISEDEFNAML 676


>gi|19745839|ref|NP_606975.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS8232]
 gi|94990137|ref|YP_598237.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10270]
 gi|139474058|ref|YP_001128774.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes str.
           Manfredo]
 gi|81632934|sp|Q8P1L1|DNLJ_STRP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123258039|sp|Q1JHP3|DNLJ_STRPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216247|sp|A2RFD0|DNLJ_STRPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|19747987|gb|AAL97474.1| putative DNA ligase [Streptococcus pyogenes MGAS8232]
 gi|94543645|gb|ABF33693.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10270]
 gi|134272305|emb|CAM30559.1| DNA ligase [Streptococcus pyogenes str. Manfredo]
          Length = 652

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 211/701 (30%), Positives = 352/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DS+YD L R    +  ++P+       + P  +
Sbjct: 2   KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVK-----AEFPNATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG+ GE+++  I+ I  IP  LS  +   I VRGE Y+S+  
Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSEPL--TITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N+     G   +ANPRNAA+G LR+L+ + +            + S      Q E+
Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTSVV-AKRQLATFLYQEASPTARNQQNEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+++++++R+        P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F  
Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F L
Sbjct: 450 --LAGFVHDVADIYQLTKEDFM------QLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRH+G++++R + + Y                       + R+  +G  IAQ++ ++++
Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKE----------EEIARIDGLGSTIAQSLTQYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  V+ L            + N  + +    +V TG L ++ R++A++ +  LGA 
Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD++I G + GSKLEKA+ LG++I +E+    L
Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRKL 652


>gi|260889570|ref|ZP_05900833.1| DNA ligase, NAD-dependent [Leptotrichia hofstadii F0254]
 gi|260860981|gb|EEX75481.1| DNA ligase, NAD-dependent [Leptotrichia hofstadii F0254]
          Length = 702

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 232/714 (32%), Positives = 376/714 (52%), Gaps = 48/714 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED-- 70
           S    +++ + L  EI YH++ YY   KP+I D EYDAL R    +   +P+L ++E+  
Sbjct: 22  SFSDVQEKYAKLRNEIEYHNNLYYNEDKPLISDMEYDALMRELKQLEQKYPELLKNEENG 81

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSI 126
            + P  KIGG  +    KV H +P LSL   +NI ++  F  RI +    ++       +
Sbjct: 82  ESSPTEKIGGTASEKFSKVRHRVPMLSLSNTYNISEIEDFDKRIKKIILSENVKEHSKEL 141

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            + LE K+DG  I++ YE G  V A  RGDG  GEDV+  I  I TIP+ L  NI   +E
Sbjct: 142 EYILELKLDGLSISLIYENGVLVQAVTRGDGQVGEDVTENIMEITTIPKKLKENIS--LE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245
           VRGE+ +  + F  +N E    G   +ANPRNAASG +R+L+ T    R L+ +++ L  
Sbjct: 200 VRGEIILPISSFNRINQEREDDGEDVFANPRNAASGTIRQLDKTIVAERGLDCYLYYLVN 259

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                     E ++ +  LGF       +   F  +    ++  + R  L Y+ DGLV K
Sbjct: 260 AENYGINTHLESIEYIEKLGFKTTKIFEKYTDFKELEKSIDKWHNYRKKLDYETDGLVIK 319

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+ F+L + LG   +SPRW I++KF  +Q  T+L+D+  Q+GRTG++TPVA LE VN+ G
Sbjct: 320 VNNFALYETLGYTTKSPRWAIAYKFPAEQVKTKLMDVTFQVGRTGVITPVAELEAVNLSG 379

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           +++  A+LHN D I+            +DI++GD V+V++A E+IP+VV+++ ++R    
Sbjct: 380 SVVKRASLHNFDEIRR-----------KDIKIGDNVIVEKAAEIIPQVVNVVFDDRTGQE 428

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                P+ CP+C S +  +        + A +C   L C  +   ++ +FVSRDA NI G
Sbjct: 429 IEIQEPANCPVCNSELAHEEG------LVALKCHNPL-CPEKVKRQIAYFVSRDAMNISG 481

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + ++ F +       I+   DI++L++ ++    ++EN+   G  SV NL +SI   
Sbjct: 482 LGDKIVEKFIE----LGKIKTIVDIYSLEKYRE----ELENLEKMGQKSVDNLINSIESS 533

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N    + +++LGI  VG   A  L K + + +N            N    +L+ V  +G
Sbjct: 534 KNRDFSKVLYALGIPFVGKFNANLLTKTFKNIENL----------KNQSIENLLAVKGIG 583

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH---EKNVSSEIENKKLVFTGTLQKIQ 662
           D +A A+  F  +  N   +  L              E+   + I++K  + TG LQK +
Sbjct: 584 DKVAVAVNTFLNDEDNWKIITDLKNIGLQFAVDENNSEEIADNPIKDKNFLATGKLQKYK 643

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           R+  ++ +   G    + +S+  D +I G+  GSKLEKA++LGV+I+ E++F  
Sbjct: 644 RNDIKDIILSKGGNYLSAVSKNLDFLIAGEKAGSKLEKAEKLGVRILTEDEFEK 697


>gi|298208451|ref|YP_003716630.1| DNA ligase [Croceibacter atlanticus HTCC2559]
 gi|83848374|gb|EAP86243.1| DNA ligase [Croceibacter atlanticus HTCC2559]
          Length = 664

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 211/706 (29%), Positives = 359/706 (50%), Gaps = 47/706 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            + ++  L +E+  H+  YY   KP I D ++D   ++   +    P+     D N P  
Sbjct: 3   VKDQIQQLREELRQHNYNYYVLDKPEISDYDFDQKLKQLQDLETENPEF---YDANSPTL 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++  +    TH     SL+  ++ EDL  +  RI +      D  + +T E K DG
Sbjct: 60  RVGGQVTKNFDTTTHDYRMYSLDNSYSKEDLEDWEKRIMKMV----DGDVHYTCELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YE G+ + A  RGDG  G++V+  ++ I +IP  L+ + P+  ++RGE+ +   
Sbjct: 116 ASISLTYEDGELIRAVTRGDGFKGDNVTNNVKTIRSIPLKLNGDYPKRFDIRGEIILPLE 175

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F  +N E +A G + YANPRN ASG L+  + T++++     +        +  K Q+E
Sbjct: 176 GFTKMNAERVANGEEAYANPRNTASGSLKLQDSTEVSKRPLDCLLYSIIGKNLNFKTQFE 235

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K R  GF V      A +   ++++ N   + R  LPY+ DG+V KV+    Q++LG
Sbjct: 236 GLEKAREWGFKVPEVATLAKSTKEVMAFVNYWDTHRHDLPYETDGVVIKVNNLQQQEELG 295

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A++PRW +++KF  +Q ST L  I  Q+GRTG +TPVA L PV + G  +  A+LHN 
Sbjct: 296 YTAKAPRWAMAYKFKAEQVSTVLEKITYQVGRTGAITPVANLIPVQLAGTTVKRASLHNA 355

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DIR  D V V++ GE+IPK++ +   +R  +++P  +   CP 
Sbjct: 356 DQIEKL-----------DIREEDTVFVEKGGEIIPKIIGVDFTKRDKNSKPTQYIEHCPE 404

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C++ +VR+         A H C     C  Q + R++H++SR A +IEGLG + +     
Sbjct: 405 CETPLVRNEGE------AQHYCPNEERCPPQVVGRIQHYISRKALDIEGLGGETVALLAN 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  I+  AD++TL+         +  +      S  NL + I   + I  ER +F 
Sbjct: 459 ----AGLIKNYADLYTLKIED------VLPLERMAQKSAENLINGIEASKQIPFERVLFG 508

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVG  +A++L K + + +N A      +    +          +G  IA+++V F+
Sbjct: 509 LGIRHVGETVAKTLVKTFKTIENLANAKEEELVEVEE----------IGGKIAESVVVFF 558

Query: 617 QNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            +      V+ L +            +  ++++E + +V +G   K+ R + ++ +   G
Sbjct: 559 SDEYKKETVQRLKEYGVQLEISAEQLQGQTNKLEGEIIVVSGVFNKLSRTELKKAIEDNG 618

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
             VS+ +S KT  ++ G+N G SK  KA+ L V I+ E++FL  +Q
Sbjct: 619 GKVSSSISSKTTYLVAGENMGPSKRTKAEGLNVPIITEDEFLDKIQ 664


>gi|21910027|ref|NP_664295.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS315]
 gi|28896275|ref|NP_802625.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes SSI-1]
 gi|81759290|sp|Q8K831|DNLJ_STRP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|21904217|gb|AAM79098.1| putative DNA ligase [Streptococcus pyogenes MGAS315]
 gi|28811526|dbj|BAC64458.1| putative DNA ligase [Streptococcus pyogenes SSI-1]
          Length = 652

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 211/701 (30%), Positives = 351/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DS+YD L R    +  ++P+       + P  +
Sbjct: 2   KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVK-----AEFPNATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG+ GE+++  I+ I  IP  LS  +   I VRGE Y+S+  
Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSEPL--TITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N+     G   +ANPRNAA+G LR+L+   +            + S      Q E+
Sbjct: 172 FKAINEGRQENGETEFANPRNAAAGTLRQLDTAVV-AKRQLATFLYQEVSPTARNQQNEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+++++++R+        P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F  
Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F L
Sbjct: 450 --LAGFVHDVADIYQLTKEDFM------QLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRH+G++++R + + Y                       + R+  +G  IAQ++ ++++
Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKE----------EEIARIDGLGSTIAQSLTQYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  V+ L            + N  + +    +V TG L ++ R++A++ +  LGA 
Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD++I G + GSKLEKA+ LG++I +E+    L
Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRQL 652


>gi|88803633|ref|ZP_01119157.1| putative DNA ligase [Polaribacter irgensii 23-P]
 gi|88780366|gb|EAR11547.1| putative DNA ligase [Polaribacter irgensii 23-P]
          Length = 665

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 221/705 (31%), Positives = 356/705 (50%), Gaps = 46/705 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L  E++ H+  YY     +I D ++D   ++ + +    P L    D N P  
Sbjct: 3   AAQTIQLLRDELNTHNYNYYVLDNGMISDFDFDVKLKKLEQLEKENPLLF---DANSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG +  +   V H     SL+  ++ EDL  +  R+ +         + +T E K DG
Sbjct: 60  RVGGAVTKNFNTVVHKNRMYSLDNSYSKEDLLDWEKRVEKVLGSSA---LEYTCELKFDG 116

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I + YE G+FV A  RGDG  G++V+  I+ I +IP  LS +     E+RGE+ +  +
Sbjct: 117 ASINLTYENGQFVKAVTRGDGFQGDEVTNNIKTIRSIPLSLSADFVHNFEMRGEIILPLD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F ++N E IA G + Y NPRN ASG L+  +  ++ +     +     TSE   K  +E
Sbjct: 177 GFNSMNAERIANGEEEYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQIVTSERKYKTHFE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+  R +GF V   ++   +   +  + +     R  LPY+ DG+V KV++   Q++LG
Sbjct: 237 SLENARRVGFKVPKAIKLVKSIDAVFDFVSYWDEKRHDLPYETDGIVIKVNDLQQQEELG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A++PRW I++KF   Q +T L  I  Q+GRTG +TPVA L PV + G  +  A+LHN 
Sbjct: 297 YTAKAPRWAIAYKFKATQVTTILNAISYQVGRTGAITPVANLNPVQLAGTTVKRASLHNA 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DIR  D V V++ GE+IPK+  +    R  +++P  + + CP 
Sbjct: 357 DQIEKL-----------DIREKDTVFVEKGGEIIPKITAVDFTRRLENSEPTRYATNCPE 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + +VR          A H C     C+ Q   R++HF+SR A +IEGLG + +D   K
Sbjct: 406 CNTLLVRSEG------DAKHYCPNEFGCAPQITGRIQHFISRKAMDIEGLGGETVDLLRK 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD++ L   Q         +    + S  N+   I K + I  E+ +F+
Sbjct: 460 E----GCIQNYADLYDLTVEQVI------PLERMAEKSAQNMIAGIEKSKEIPFEKVLFA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG  +A+ LAKY+ S  N              ++  LI V  +GD IAQ+I++F 
Sbjct: 510 LGIRFVGETVAKKLAKYFKSIDNLMHA----------EFEVLISVDEIGDRIAQSIIDFS 559

Query: 617 QNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            +  NI  +  L           E  +N +  ++ +  V +G   ++ R++ ++ +   G
Sbjct: 560 SDEGNIQLINRLKSYGVQLEVSAEILENQTELLKGQVFVVSGVFHQLSRNELKKAIEDNG 619

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
             VSA +S+KT+ I+ GDN G SKL KAQ LG++I++E+  +  +
Sbjct: 620 GKVSASISKKTNYIVAGDNMGPSKLTKAQDLGIEIISEQNLIDKI 664


>gi|237733138|ref|ZP_04563619.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383820|gb|EEO33911.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 664

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 214/703 (30%), Positives = 349/703 (49%), Gaps = 47/703 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
               L+  I YH+D YY    P I D EYD + +    +    P+   S   + P  K+G
Sbjct: 6   RYKELKATILYHNDRYYNQDNPEITDYEYDMMMQELKGLEQKHPEYITS---DSPTQKVG 62

Query: 80  GEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G     +   V H++P LSL+ +++ ED+  F+  +             F +E KIDG  
Sbjct: 63  GSAKREAGVLVRHNVPMLSLQDVFSKEDVDAFVADMQEQLV-----DPTFVVEYKIDGLS 117

Query: 139 ITIRYEKGKFVYAALRGDGH-SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
           + +RY  GK   A  RGDG   GEDV+   + I  +   L   I E +EVRGEVY++   
Sbjct: 118 MALRYVNGKLDVAVTRGDGVLQGEDVTVNAKVIKDVKNTLKEPI-EYLEVRGEVYMTNEA 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+     G+K +ANPRN A+G LR+L+ +    R L+ FV  +            E
Sbjct: 177 FDKVNEIQEIKGKKLFANPRNCAAGTLRQLDSSITKERNLSMFVFNIQDAKGREFISHSE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
             + ++  G  +    +   T   +      +   R  L YDIDG V K+D F+ +++LG
Sbjct: 237 GYEYLKRQGIKIIEDYKICKTAKEVWEAIEAIGENRDKLGYDIDGAVVKIDSFADRQKLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ PRW +++K+  ++  T+LL I++ +GRTG +TP A  EP+ + G  ++ ATLHN+
Sbjct: 297 ATAKVPRWAVAYKYPPEEKETKLLAIELSVGRTGRITPTAIFEPIRLCGTTVSRATLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I  L           D+R+GD ++V ++GE+IPKV  ++  +R  D+ P+   + CP+
Sbjct: 357 DFIDDL-----------DVRIGDTIVVYKSGEIIPKVKGVVKEKRPADSVPYVIGNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  VR+ +    K           +C ++ +  + +FV RDA +I+G G   ++    
Sbjct: 406 CGAPAVREGDNADIK-------CTNHSCPSKLVRNIVNFVGRDAMDIKGFGFAYVETLVD 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++  +DI+ L  ++Q    K          S  NL ++I   +N    + + S
Sbjct: 459 H----GYLKDLSDIYGLIDKRQELLDKKII---GLVKSTDNLLNAIEGSKNNDAIKLLTS 511

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI +VG   A+SL K + S  N  +            +  LI V  +GDI A AI+ ++
Sbjct: 512 LGISNVGKSAAKSLMKKFKSIDNLMKA----------SYAQLIEVNDIGDISAMAIINYF 561

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +NP N   V+ L +          ++     + K  V TGTL  + R  A E + + G  
Sbjct: 562 KNPDNQAVVQRLKEYGVNMNIIEAQDGDERFDGKTFVVTGTLPTLSRKAASELIEKHGGK 621

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           VS  +S+KTD ++ G+N GSKL KAQ LG+ +++EE  L +++
Sbjct: 622 VSGSVSKKTDYLLAGENAGSKLTKAQNLGINVISEETLLEMVK 664


>gi|68536402|ref|YP_251107.1| NAD-dependent DNA ligase LigA [Corynebacterium jeikeium K411]
 gi|123748223|sp|Q4JUL8|DNLJ_CORJK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|68264001|emb|CAI37489.1| DNA ligase [Corynebacterium jeikeium K411]
          Length = 695

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 200/716 (27%), Positives = 338/716 (47%), Gaps = 57/716 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +     L  ++ +H   YY Y +P I D+++DAL +    +  A P++        P  +
Sbjct: 4   QSRWQELADQVRHHRQLYY-YGEPEISDADFDALLQELKDLEQAHPEVVTGA---SPTEE 59

Query: 78  IGGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +      +     V H    LSL+ +++ E L  ++ R           +  +  E KID
Sbjct: 60  VAPAPPTSSPFRNVDHREQMLSLDNVFDTEQLAGWLDRT---------PAKTYLTELKID 110

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEV 191
           G  I + Y  G+   A  RGDG +GED++   R +  IP  L        PE++E+RGEV
Sbjct: 111 GASINLLYIDGQLELALTRGDGTTGEDITHNARTLDDIPDTLHGTDEFPVPELVEIRGEV 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           +I   DF A+N +  A G K +ANPRNAA+G +R+ N      R L    HG+G      
Sbjct: 171 FIDVEDFAAMNAQRQAEGLKMFANPRNAAAGAMRQKNSADTAKRPLKLICHGIGAREGFS 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q++  + +   G PV+   +Q ++   +        + R    +++DGLV KVD   
Sbjct: 231 PASQHDAYRAIAAWGLPVSPYTKQVHSAKEVQQQVEYWGNHRHDAAHEMDGLVVKVDSLE 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  +R+PRW I++K+  ++A T L +I + IGRTG  TP A + P  + G+ ++ 
Sbjct: 291 EQLELGHTSRAPRWAIAYKYPPEEAMTTLHNIRVGIGRTGRATPYAVMAPKYVAGSTVSM 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN                 + + +GD + +++AGEVIP+V+  + ++R    +PF F
Sbjct: 351 ATLHNPTEAHR-----------KGVLLGDTITIRKAGEVIPEVLGPVEDKRTGAERPFLF 399

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            +FCP C +R+       +    A  RC     C  Q   RL +  SR AF+I+ LG++ 
Sbjct: 400 STFCPECGTRLA-----PSKVGDADWRCPNTQYCPGQLHTRLTYLASRKAFDIDALGEKG 454

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                 S      +   +++F L+      T+      G  + S   L + +   +   L
Sbjct: 455 AYDLIHS----GVLADESELFDLRAEDLEKTSSYATKAGKLNKSGETLLEKLQSAKEADL 510

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + +L IRHVG   A++LAK++ S ++ A                +  +  V + IA+
Sbjct: 511 WRVLVALSIRHVGPTAAKALAKHFESVEDIASA----------SAEEMAGIDGVAETIAE 560

Query: 611 AIVEFYQNPRNICAVEALLKEVSPS-------IGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +I +++    +   V+                 G  +   S+ +E   +V TG+L+   R
Sbjct: 561 SISDWFTVDWHRRIVDRWAAAGVRMRREAGNVPGAADGVDSALLEGLTIVVTGSLEDFDR 620

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             A+E +   G   +  +S+KTD ++ G+  GSKL+KA+ LGV +++E  F  LL+
Sbjct: 621 TAAKEAIEARGGKAAGSVSKKTDFLVAGEKAGSKLKKAEDLGVPVLDEAAFKELLE 676


>gi|71903217|ref|YP_280020.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS6180]
 gi|123761437|sp|Q48UE1|DNLJ_STRPM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71802312|gb|AAX71665.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS6180]
          Length = 652

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 211/701 (30%), Positives = 352/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DS+YD L R    +  ++P+       + P  +
Sbjct: 2   KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVK-----AEFPNATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG+ GE+++  I+ I  IP  LS  +   I VRGE Y+S+  
Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSEPL--TITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N+     G   +ANPRNAA+G LR+L+   +            + S      Q E+
Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTAVV-AKRQLATFLYQEASPTARNQQNEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN   +  ++   I ++   +++ R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWNFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+++++++R+        P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F  
Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F L
Sbjct: 450 --LAGFVHDVADIYQLTKEDFM------QLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRH+G++++R + + Y                       + R+  +G  IAQ++ ++++
Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKE----------EEIARIDGLGSTIAQSLTQYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  V+ L            + N  + +    +V TG L ++ R++A++ +  LGA 
Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD++I G + GSKLEKA+ LG++I +E+    L
Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRQL 652


>gi|167756540|ref|ZP_02428667.1| hypothetical protein CLORAM_02077 [Clostridium ramosum DSM 1402]
 gi|167702715|gb|EDS17294.1| hypothetical protein CLORAM_02077 [Clostridium ramosum DSM 1402]
          Length = 664

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 214/703 (30%), Positives = 349/703 (49%), Gaps = 47/703 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
               L+  I YH+D YY    P I D EYD + +    +    P+   S   + P  K+G
Sbjct: 6   RYKELKATILYHNDRYYNQDNPEITDYEYDMMMQELKGLEQKHPEYITS---DSPTQKVG 62

Query: 80  GEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G     +   V H++P LSL+ +++ ED+  F+  +             F +E KIDG  
Sbjct: 63  GSAKREAGVLVRHNVPMLSLQDVFSKEDVDAFVADMQEQLV-----DPTFVVEYKIDGLS 117

Query: 139 ITIRYEKGKFVYAALRGDGH-SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
           + +RY  GK   A  RGDG   GEDV+   + I  +   L   I E +EVRGEVY++   
Sbjct: 118 MALRYVNGKLDVAVTRGDGVLQGEDVTVNAKVIKDVKNTLKEPI-EYLEVRGEVYMTNEA 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+     G+K +ANPRN A+G LR+L+ +    R L+ FV  +            E
Sbjct: 177 FDKVNEIQEIKGKKLFANPRNCAAGTLRQLDSSITKERNLSMFVFNIQDAKGREFISHSE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
             + ++  G  +    +   T   +      +   R  L YDIDG V K+D F+ +++LG
Sbjct: 237 GYEYLKRQGIKIIEDYKICKTAKEVWEAIEAIGENRDKLGYDIDGAVVKIDSFADRQKLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ PRW +++K+  ++  T+LL I++ +GRTG +TP A  EP+ + G  ++ ATLHN+
Sbjct: 297 ATAKVPRWAVAYKYPPEEKETKLLAIELSVGRTGRITPTAIFEPIRLCGTTVSRATLHNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D+I  L           D+R+GD ++V ++GE+IPKV  ++  +R  D+ P+   + CP+
Sbjct: 357 DFIDDL-----------DVRIGDTIVVYKSGEIIPKVKGVVKEKRPADSAPYVIGNTCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  VR+ +    K           +C ++ +  + +FV RDA +I+G G   ++    
Sbjct: 406 CGAPAVREGDNADIK-------CTNHSCPSKLVRNIVNFVGRDAMDIKGFGFAYVETLVD 458

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  ++  +DI+ L  ++Q    K          S  NL ++I   +N    + + S
Sbjct: 459 H----GYLKDLSDIYGLIDKRQELLDKKII---GLVKSTDNLLNAIEGSKNNDAIKLLTS 511

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI +VG   A+SL K + S  N  +            +  LI V  +GDI A AI+ ++
Sbjct: 512 LGISNVGKSAAKSLMKKFKSIDNLMKA----------SYAQLIEVNDIGDISAMAIINYF 561

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +NP N   V+ L +          ++     + K  V TGTL  + R  A E + + G  
Sbjct: 562 KNPDNQAVVQRLKEYGVNMNIIEAQDGDERFDGKTFVVTGTLPTLSRKAASELIEKHGGK 621

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           VS  +S+KTD ++ G+N GSKL KAQ LG+ +++EE  L +++
Sbjct: 622 VSGSVSKKTDYLLAGENAGSKLTKAQNLGINVISEETLLEMVK 664


>gi|223932796|ref|ZP_03624793.1| DNA ligase, NAD-dependent [Streptococcus suis 89/1591]
 gi|223898505|gb|EEF64869.1| DNA ligase, NAD-dependent [Streptococcus suis 89/1591]
          Length = 652

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 212/701 (30%), Positives = 360/701 (51%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +S L   ++ +   YYQ  +P + D+EYD L R    +  A P+L     P+ P ++
Sbjct: 2   KTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELIL---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG+M     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG 
Sbjct: 59  VGGKMLDGFEKYSHVYPLFSLQDAFSREELEAFDQRVRK-----EFPQATYICELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GE+++  ++ +  +P  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEAGNLVVGATRGDGSVGENITENLKRVADVPLTLPEAV--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N +    G   +ANPRNAA+G LR+L+   +            + S   A  Q ++
Sbjct: 172 FDRVNKQRQEAGEAEFANPRNAAAGTLRQLDTGVV-AQRGLATFLYQEASPSEATSQSQV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+K+  LGF  N+    A +      +  ++   R  LPY+IDG+V KV++ ++Q++LG 
Sbjct: 231 LEKLDALGFVTNHEYCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW +++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAVAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++   R         PS CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLKVVDKYRKEQEI-MPIPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           QS +    +        A RC   + C +Q + +L+HF SRDA NI GLG   ++  F  
Sbjct: 399 QSDLQHYEDE------VALRCINPI-CPSQLMSKLEHFASRDAMNIAGLGSSIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L      +      + GF + S   LY +I   ++ S E  +F L
Sbjct: 450 --GAGLVHDVADIYKLTVDDLLT------LEGFKEKSADKLYQAIQTSKSNSAECLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L + +   +  A            D  ++  +  +G +IA+++  F+ 
Sbjct: 502 GIRHVGSKASKILVEKFGDLETLAFA----------DQEAIALLEGLGQVIAKSLTTFFA 551

Query: 618 NPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +      +  L +  V+ +      + ++ +    +V TG L++++R++A+  +  LGA 
Sbjct: 552 SEGAQQLLAELKEAKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KT++++ G + GSKL KAQ+LG++I +E     L
Sbjct: 612 VAGSVSKKTNLVVAGTDAGSKLTKAQELGIEIKDEAWLESL 652


>gi|119717662|ref|YP_924627.1| DNA ligase, NAD-dependent [Nocardioides sp. JS614]
 gi|166216220|sp|A1SMA5|DNLJ_NOCSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119538323|gb|ABL82940.1| DNA ligase, NAD-dependent [Nocardioides sp. JS614]
          Length = 752

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 211/710 (29%), Positives = 356/710 (50%), Gaps = 35/710 (4%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+E   + +EI      YY    P I D+++D   RR +A+   FP+L     P+ P   
Sbjct: 64  REEHRLIAEEIEEARWRYYVLDSPTIDDADFDRRMRRLEALEEEFPEL---RTPDSPTQT 120

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG ++       H     SL+  +++E++  +  R+ R              E K+DG 
Sbjct: 121 VGGAVSTDFTSHPHLRRMESLDNAFSVEEVEAWYARLRR----DGVEDPALLCELKVDGL 176

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEVYI 193
            I + YE+G+ V A  RGDG +GEDV++ ++ I ++P  L+       P ++EVRGEV++
Sbjct: 177 AINLLYEEGRLVRALTRGDGTTGEDVTSNVKTITSVPHRLTGTDEFPVPALVEVRGEVFL 236

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
               F  LN+ ++  G+ P+ANPRN+A+G LR+ +P    +R L    HG+G+      +
Sbjct: 237 PVEAFERLNESLLEAGKAPFANPRNSAAGSLRQKDPRITASRALGMVCHGIGERRGFEPQ 296

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVYKVDEFSL 311
            Q      +   G P ++ VR  +T  G+  Y     + R T+ PY+IDG+V KVD+ +L
Sbjct: 297 AQSHAYDALAAWGLPTSDQVRVVSTLKGVEGYIENAGARRHTIVPYEIDGVVVKVDDVAL 356

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  +R+PRW I+ K+  ++ + +LL+I + +GRTG +TP A +EP  + G+ + NA
Sbjct: 357 QRRLGSTSRAPRWAIAFKYPPEEVNAKLLEIRVNVGRTGRVTPYAVMEPTKVAGSTVENA 416

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   ++  D              GD V++++AG+VIP+++  ++  R    QP+  P
Sbjct: 417 TLHNFYEVERKDVRPGGPGD-----PGDTVILRKAGDVIPEILGPVLALRPEGLQPWVPP 471

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +V     +  +     RC     C  Q  ER+    SR+AF+IEGLG +  
Sbjct: 472 TTCPSCGTPLV-----EQKEGDKDRRCPNHEKCPGQLRERVFFVASRNAFDIEGLGYEAA 526

Query: 492 DFFFKSEDPA--FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                +E  A    +        L+    T   K +        +   L D+++K + + 
Sbjct: 527 VALLDAEVIANEGDVFDLDAAALLRAPLFTRAPKKDEDGPQLSANGQRLLDNLDKAKQVP 586

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L IRHVG +  R+LA  + S                     L     VG  IA
Sbjct: 587 LWRVLVALSIRHVGPKAGRALATEFGSMAAIRAATE----------EQLAAAEGVGPTIA 636

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +A++E+++ P ++  V+   +         +++    +    +V TG+L    R  A+E 
Sbjct: 637 EAVIEWFKEPWHVEIVDKWERAGVTMADERDESTPRTLAGLTVVVTGSLVDFSRDSAKEA 696

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +   G   +  +S+KTD ++VG+N GSK +KA+QLGV +++E  F  LL 
Sbjct: 697 ILSRGGKAAGSVSKKTDYVVVGENAGSKADKAEQLGVPVLDEAGFKTLLD 746


>gi|256785054|ref|ZP_05523485.1| NAD-dependent DNA ligase LigA [Streptomyces lividans TK24]
 gi|289768947|ref|ZP_06528325.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24]
 gi|289699146|gb|EFD66575.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24]
          Length = 735

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 221/737 (29%), Positives = 352/737 (47%), Gaps = 62/737 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR+  + L ++I  H   YY    P++ D+E+D L R  + +    P+L     P  
Sbjct: 17  PAEARERHAQLAEQIEEHRFRYYVNDAPVVSDAEFDRLLRTLEELEERHPEL---RTPES 73

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G        V H    LSL+  +N ++L  +  RI R   +       F  E K
Sbjct: 74  PTQKVAGAYATEFTAVQHPTRMLSLDNTFNDDELAAWFERIARELGE---QEYHFLCELK 130

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YE+G+ V AA RGDG +GED++  +R I  IP  L+ +  P+++E+RGEVY
Sbjct: 131 VDGLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLAGDKVPDLVEIRGEVY 190

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
                F  LN  +   G KP+AN RNAA+G LR+ +P    +R L+  VHG+G       
Sbjct: 191 FPMEKFQELNARLNEAGDKPFANARNAAAGSLRQKDPRVTASRPLHMVVHGIGTLEGYSG 250

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                +    ++  G P +   R  +   G+  +       R ++ ++IDG+V KVDE  
Sbjct: 251 LTRLSQAYDLLKAWGLPTSPHNRVVDGLDGVREFIAYYGENRHSVAHEIDGVVVKVDEIR 310

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  AR+PRW I++K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ +  
Sbjct: 311 LQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSEVEF 370

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN++ +K            + + +GD V++++AG+VIP+++  + + R    + F  
Sbjct: 371 ATLHNQEVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVM 419

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK-- 488
           P+ CP C + +         +     RC    AC AQ  ER+ +   R+  +IE  G   
Sbjct: 420 PAECPECGTPLKAM-----KEGDIDLRCPNARACPAQLRERVAYLAGRECLDIEHFGGVV 474

Query: 489 ----------------QQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTK-----IE 525
                            + D F  + +    I+         L +R   +  +       
Sbjct: 475 AAALTGPLEPSEPPLVDEGDLFDLTVEKLLPIKAYVLDPDSGLPKRDPKTGEEKIATVFA 534

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
           N  G    +   L   I + +   L RFI  L IR+VG   A++LA+ + S     Q   
Sbjct: 535 NKEGEPKKNTLALLQHIEEAKTRPLARFINGLSIRYVGPVAAQALAREFRSIDRIEQATE 594

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNV 643
                       L     VG  IA A+ E++    +   V        P   R   E   
Sbjct: 595 ----------EELASTDGVGGTIATAVKEWFAVDWHREIVRKWKAAGVPLEDRSTGEDEG 644

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA Q
Sbjct: 645 PRPLEGLTVVVTGTLENFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQ 704

Query: 704 LGVKIMNEEQFLFLLQQ 720
           L V ++NE+ F  LL+Q
Sbjct: 705 LKVPVLNEDGFAVLLEQ 721


>gi|302336117|ref|YP_003801324.1| DNA ligase, NAD-dependent [Olsenella uli DSM 7084]
 gi|301319957|gb|ADK68444.1| DNA ligase, NAD-dependent [Olsenella uli DSM 7084]
          Length = 747

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 224/728 (30%), Positives = 341/728 (46%), Gaps = 59/728 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
              + L + +S     YY    P + D+E+D L     A+  A P+L     P     +I
Sbjct: 46  ARAAELNRILSRAAYAYYALDDPEMTDAEFDRLLVELQALESAHPELV---SPESYTQRI 102

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG ++     V H+    S++   ++++L +++ R         +  + +T E KIDG  
Sbjct: 103 GGYVSDQFEPVRHAQRMYSIDDAMSLDELDEWLARTDGALGATAERPVAYTCELKIDGLG 162

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---------IEVRG 189
           I + Y  G  V AA RGDG +GE+V+A    I  IPR L+               IEVRG
Sbjct: 163 IALTYRDGTLVRAATRGDGTTGENVTANALTIKDIPRALASAGMGRIAGGGFGVSIEVRG 222

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EVY+ K+ F+ LN++  A GR+P+ANPRNAA+G LR+ + +    R L  F++ +   S 
Sbjct: 223 EVYMPKHSFVRLNEQNDAAGRQPFANPRNAAAGSLRQKDSSVTKARDLETFIYAVADESP 282

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +    Q++ L  ++  GF VN   R+  +   +  +  +  + R  L YDIDG+V KVD 
Sbjct: 283 LAIDTQHDFLSWLKDCGFSVNPHARRVESSREVRRFCVDALAYRGELDYDIDGVVVKVDS 342

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+ Q  LG  AR+PRW ++ KF  ++  T L  I +Q+GRTG+LTPVA  +PV + G+ I
Sbjct: 343 FAGQAALGFTARAPRWSMAFKFPPEERRTVLRQIRVQVGRTGVLTPVAEFDPVVVAGSTI 402

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP- 427
             ATLHN D ++            +D+R GD ++V +AG+VIP+VV  +           
Sbjct: 403 ARATLHNIDEVRR-----------KDVREGDTIVVHKAGDVIPEVVGPVTEGPLAAEHEA 451

Query: 428 ---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              +  P  CP C S VVR+          A RC   + C AQ  ERL H+ SR+A +I+
Sbjct: 452 RPLWDMPETCPSCGSPVVREEGE------VAWRCVS-IDCPAQASERLIHWGSRNAMDID 504

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQQTSTTKIENILGFGDVS 534
           GLG + +    +       +    D   +                   +  + +  G   
Sbjct: 505 GLGDEIVGRMVEQGILTD-VADYYDRLDVDTLAAVDTGRVYETAGKGHEEGDGIVVGPTI 563

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
              +   +   +   L R +F LGIRHVGA +A  LA  + S Q  A             
Sbjct: 564 AGKIMGQVEASKRAGLGRVLFGLGIRHVGASVANLLADRFGSMQALAAATE--------- 614

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKK 651
              + +V  +G  IAQ++  F+    N+  VE L                     ++   
Sbjct: 615 -EDMAQVDGIGPKIAQSVRGFFSVEGNVAVVERLRAAGVSLEQEGFGEGPKRPQTLDGLT 673

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
            V TGTL+K  R  A   +  LGA VS  +S+KT  ++ G   GSKL KAQ LGV +++E
Sbjct: 674 FVLTGTLEKYSRGDAGSRLKALGAKVSGSVSKKTSFVVAGAAAGSKLAKAQALGVTVLDE 733

Query: 712 EQFLFLLQ 719
                +L 
Sbjct: 734 TALDHILA 741


>gi|28377923|ref|NP_784815.1| DNA ligase (NAD+) [Lactobacillus plantarum WCFS1]
 gi|81631729|sp|Q88XQ0|DNLJ_LACPL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28270757|emb|CAD63662.1| DNA ligase (NAD+) [Lactobacillus plantarum WCFS1]
          Length = 679

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 229/714 (32%), Positives = 374/714 (52%), Gaps = 53/714 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
              +++EQA  E ++L Q ++     YY    P + DS YD    R   +   FP L   
Sbjct: 5   PNTMTVEQAADEAAALRQTLNEWRRQYYDEDAPNVEDSVYDQKYERLVELEQTFPQLV-- 62

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+ P   +GG +     KVTH IP LSL  +++  +L++F+ R     ++   + + +
Sbjct: 63  -TPDSPTQLVGGTVKAGFDKVTHEIPMLSLGDVFSQAELQEFVDR----LEQNVGHPVDY 117

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             E KIDG  +++RYE G  V  + RG+G  GED++A I+ I +IP    L  P  I+VR
Sbjct: 118 NCELKIDGLALSLRYEDGVLVQGSTRGNGTVGEDITANIKTIKSIP--QRLTRPLTIDVR 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247
           GE Y+ K  F ALN+   A G   +ANPRNAA+G LR+L+      R L+ F++ +    
Sbjct: 176 GECYMPKAAFAALNERREAAGEPVFANPRNAAAGTLRQLDSRVVAERQLSTFMYNIADYE 235

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            + A+ Q +ML +   LGF +N   + A++   + SY +  ++ R  L Y IDG+V K +
Sbjct: 236 PLTARTQSDMLTEFADLGFAINPDFKVAHSMADVFSYIDHYQNERPELAYGIDGIVIKAN 295

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ+ LG   + PRW I+ KF   +  T L D++  +GRTG++TP A +EPV + G  
Sbjct: 296 PLPLQRSLGATVKVPRWAIAFKFPPDEQPTLLKDVEWTVGRTGVVTPTAVMEPVQLAGTT 355

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN DY+             +D+R+GD VL+ +AG++IP++  + + +R  DAQP
Sbjct: 356 VARASLHNPDYV-----------AAKDVRIGDTVLLHKAGDIIPEISSVDLAKRPKDAQP 404

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP C + +V   +        A RC     C AQ  E L HF SR+A NI+GLG
Sbjct: 405 LVIPTTCPSCGAPLVHLEDE------VALRCINPK-CPAQVQEGLVHFASRNAMNIDGLG 457

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +   + +      +   A ++ L + Q  +      +    D S   L  +I++ R+
Sbjct: 458 PRIIAQLYANR----LVSDVAGLYRLTKAQLLT------LDKIKDKSAEKLLTAIDRSRD 507

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SLER +F LGIRHVGA++AR +A+++ + +                   +  +  +GD+
Sbjct: 508 NSLERLLFGLGIRHVGAKVARLIAQHFGTIEALMAASQ----------EEIAAIDSMGDV 557

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQ 662
           IA A+V+++++      +  L      +  +       ++ +S    K++V TG L+   
Sbjct: 558 IANAVVQYFESDEVHTLIRELQAVNVNTTYQGPSATVAEDSNSWFAGKRVVLTGKLESFT 617

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           R  A +++   GA V   +S+KTD++I G + GSKL+KAQQL + + +E +F  
Sbjct: 618 RPDATQWLQAHGATVMGSVSKKTDLVIAGSDAGSKLQKAQQLDITVWDEARFSE 671


>gi|160945211|ref|ZP_02092437.1| hypothetical protein FAEPRAM212_02730 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442942|gb|EDP19947.1| hypothetical protein FAEPRAM212_02730 [Faecalibacterium prausnitzii
           M21/2]
          Length = 671

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 224/713 (31%), Positives = 356/713 (49%), Gaps = 51/713 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E L +EQA+K +  L   I  ++  YY    P + D EYDAL R    +   FP L  +
Sbjct: 1   MEYLELEQAKKRVKELRAIIEKNNRLYYDQDAPELEDFEYDALTRELKELEAQFPQLVTA 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                P  K+GG  +  L KVTH++   SL   ++ ++LR F  R+             +
Sbjct: 61  A---SPTQKVGGTASSKLPKVTHAVKMESLLDAFSFDELRDFDRRVRE-----AGVEPEY 112

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG   ++ YE G+ V A+ RGDG  GEDV+A +RAI +IP+ L    PE +EVR
Sbjct: 113 VVEIKIDGLSCSLEYENGQLVRASTRGDGVVGEDVTANVRAIRSIPKTLKDA-PEFLEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTS 247
           GEVY+    F  L  E    G  P+ NPRNAA+G LR+ +        L+ FV  + +  
Sbjct: 172 GEVYMPHGAFQHLCAEQELQGAAPFKNPRNAAAGSLRQKDARITGSRGLSIFVFNVQQIR 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   E L  ++ LG PV+      +     ++    +   RS L +D+DG V KV+
Sbjct: 232 GKTLTKHSESLDYLKSLGLPVSPRYHVVHDIEDAIAEIENIGQNRSKLDFDMDGAVIKVN 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +F+ ++ +G   + PRW I+ K+  +   T L  I++ +GRTG+LTP A  +PV + G  
Sbjct: 292 DFAQRELMGSTNKFPRWAIAFKYPPEVKETTLRSIEVAVGRTGVLTPTACFDPVFLAGTT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHNED+I+              + +GD + V++AG++IP+V+ +  +     A+P
Sbjct: 352 VARATLHNEDFIRQF-----------GLCIGDTIQVRKAGDIIPEVIGVTHHA--EGAEP 398

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           ++ P+ CP C + VV   +       AA RC      +      + HF SRDA +IEGLG
Sbjct: 399 YTMPTVCPSCGAPVVHLEDE------AALRCVNPECPAQAL-RNIIHFASRDAMDIEGLG 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       + E     +   ADI+TL R Q         +  F + S  NL  +I   + 
Sbjct: 452 EAVATQLVEKE----LVHSAADIYTLTREQL------LELDKFKEKSADNLLQAITASKQ 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L++ +F  GIR++G + A  LA+++ + Q   +               + ++   G +
Sbjct: 502 NNLDKLLFGFGIRNIGDKAAALLAEHFGTLQAIREAT----------AEQVSQIDGFGGV 551

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +AQ++VEF+        V  L         + E     ++  K LV TGTL+ + R++A+
Sbjct: 552 MAQSVVEFFAKEGTTDLVHRLADAGVNMQWKGEPKGD-KLAGKTLVVTGTLETLSRNEAE 610

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             + + G   S  +S+KT  ++ G   GSKL KAQ LGV ++ E++FL +LQ 
Sbjct: 611 ALIVKNGGKASGSVSKKTAYVVAGAAAGSKLTKAQALGVPVLTEQEFLAMLQD 663


>gi|170016835|ref|YP_001727754.1| DNA ligase, NAD-dependent [Leuconostoc citreum KM20]
 gi|254781358|sp|B1MXQ8|DNLJ_LEUCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169803692|gb|ACA82310.1| DNA ligase, NAD-dependent [Leuconostoc citreum KM20]
          Length = 681

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 242/725 (33%), Positives = 384/725 (52%), Gaps = 51/725 (7%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
            +  P+  L+ + A++E+++L++ ++ +   YY+   P++ D  YDA   R   +   FP
Sbjct: 3   PEFTPVNNLTTQMAQQEIATLQKRLTDYGVAYYEEDAPLVEDYIYDAFYARLVLLEAQFP 62

Query: 64  DLARSEDPNGPLNKIGG-EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
                  P+ P   +GG ++   L KV H  P LSL  ++++E+L+++  R  +    + 
Sbjct: 63  QFV---TPDSPTQNVGGAKVKSGLAKVVHPAPMLSLGDVFSLEELQEWDERTTKTLGFQS 119

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
                + LE KIDG  + + Y  GK V A+ RG+G  GEDV+A ++ I +IP+ L+  I 
Sbjct: 120 ----EYNLELKIDGLAVALTYVDGKLVQASTRGNGSIGEDVTANVKTIRSIPQTLTEPI- 174

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
             IEVRGE+Y+ K+ F  LN +  A G +P+ANPRNAA+G LR+LN      R L+ FV+
Sbjct: 175 -TIEVRGEIYMPKSSFATLNKQREADGLEPFANPRNAAAGSLRQLNVAITKKRELSAFVY 233

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
                  I    Q   L++   LG P ++  R   T   I +Y  E  S R  L Y IDG
Sbjct: 234 YTADPDAIGVTTQSGALERFAALGLPTDDHNRVIATMADIDAYIAEYTSQRERLAYGIDG 293

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KV++   Q  LG   + PRW I++KF  ++A T + DI+  +GRTG +TP A ++PV
Sbjct: 294 VVVKVNQLDNQLDLGHTVKIPRWAIAYKFPPEEALTVVRDIEWTVGRTGAVTPTAVMDPV 353

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  +  A+LHN DY+             +DIR+GD V + +AG++IP++  +++ ER
Sbjct: 354 QLAGTTVQRASLHNPDYL-----------NAKDIRIGDTVTLHKAGDIIPEIGQVLLAER 402

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             + Q +  P+FCP C S +V            A RC     C AQ  E+L HF SR+A 
Sbjct: 403 PANNQVYDIPTFCPACHSELVHLDGE------VALRCINPF-CVAQIQEKLTHFASRNAM 455

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI+G+G + +    K    A  I+  A I+ LQ  Q  S      +  F + SVTNL  +
Sbjct: 456 NIDGMGPRVVSQLLK----ANYIQDVASIYRLQETQLLS------LDKFKEKSVTNLLSA 505

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I   ++ SLER +F LGIR VGA+ AR +A+ + + Q  A              + +  +
Sbjct: 506 ITTSKSNSLERLLFGLGIRMVGAKAARLIAEKFKTLQAIADA----------SVIDIASI 555

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQ 659
             +G+ IA ++V++++ P     +  L +         +  V   S    KK+V TG L+
Sbjct: 556 AGIGETIALSVVQYFKTPEAKQLLIELQEAGVNQTYLSDVIVDETSFFYGKKIVLTGKLE 615

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           K  R +A +++   GA V+  +S KTD++I G++ GSKL+KA  LGV + +E+ F+    
Sbjct: 616 KGSRTEATKWLQDHGAQVTGSVSAKTDLLIAGEDAGSKLDKANALGVTVWDEQAFIEAQA 675

Query: 720 QYNTT 724
           +  T 
Sbjct: 676 KEGTD 680


>gi|15674800|ref|NP_268974.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes M1 GAS]
 gi|71910386|ref|YP_281936.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS5005]
 gi|81533831|sp|Q9A0J5|DNLJ_STRP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|13621930|gb|AAK33695.1| putative DNA ligase [Streptococcus pyogenes M1 GAS]
 gi|71853168|gb|AAZ51191.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS5005]
          Length = 652

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 211/701 (30%), Positives = 352/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DS+YD L R    +  ++P+       + P  +
Sbjct: 2   KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVK-----AEFPNATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG+ GE+++  I+ I  IP  LS  +   I VRGE Y+S+  
Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPYQLSEPL--TITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N+     G   +ANPRNAA+G LR+L+ + +            + S      Q E+
Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTSVV-AKRQLATFLYQEASPTARNQQNEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+++++++R+        P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F  
Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F L
Sbjct: 450 --LAGFVHDVADIYQLTKEDFM------QLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRH+G++++R + + Y                       + R+  +G  IAQ++ ++++
Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKE----------EEIARIDGLGSTIAQSLTQYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  V+ L            + N  + +    +V TG L ++ R++A++ +  LGA 
Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD++I G + GSKLEKA+ LG++I +E+    L
Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRQL 652


>gi|158312936|ref|YP_001505444.1| DNA ligase, NAD-dependent [Frankia sp. EAN1pec]
 gi|254781334|sp|A8L538|DNLJ_FRASN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|158108341|gb|ABW10538.1| DNA ligase, NAD-dependent [Frankia sp. EAN1pec]
          Length = 703

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 220/712 (30%), Positives = 345/712 (48%), Gaps = 48/712 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R   + L +E+  H   YY   KP + D+EYDAL R  +AI    P+L     P+ P  K
Sbjct: 27  RGRAAELARELEEHAYRYYVLDKPTVADAEYDALMRELEAIEERHPEL---RTPDSPTQK 83

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           + G  +     V H    LSL+ ++  E+   +  R  R     +     +  E KIDG 
Sbjct: 84  VAGSYSTLFTPVEHLERLLSLDNVFTDEEFHAWAARAAR-----EQPVTAWLCELKIDGL 138

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196
            + + YE G+ V AA RGDG +GED++  +R + ++P  L    +PE++EVRGEV+    
Sbjct: 139 AVDLVYEGGRLVRAATRGDGRTGEDITPNVRTLASVPSRLRGPAVPELLEVRGEVFFPTE 198

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L+  VHGLG         Q 
Sbjct: 199 RFTELNAALVEAGKAPFANPRNAAAGSLRQKDPRVTASRPLDMIVHGLGAHQGFDVASQS 258

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
               ++  LG PV+       +   ++++       R  + ++IDG+V KVD+F  Q++L
Sbjct: 259 GAYARLAELGLPVSARHEVLASVEDVLAFVRRWGEHRHDVEHEIDGVVVKVDDFGQQRRL 318

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +++PRW ++ K+  ++ +TRL DI + +GRTG +TP   LEPV + G+ +  ATLHN
Sbjct: 319 GATSKAPRWAVAFKYPPEEVTTRLRDIQVNVGRTGRVTPFGVLEPVKVAGSTVAMATLHN 378

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D +           G + + +GD V++++AG+VIP++V  +V+ R    + F  P+ CP
Sbjct: 379 IDEV-----------GRKGVLIGDTVVLRKAGDVIPEIVSPVVDLRDGSERAFVMPTHCP 427

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C +++VR             RC   ++C AQ  E + H  SR A +I+GLG +      
Sbjct: 428 ECGTQLVRPEGE------VDIRCPNTVSCPAQLRESVFHLASRGALDIDGLGYETATVLL 481

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   I    D+F L           E + GF D  +  +   +   R+  L R + 
Sbjct: 482 AE----GRIHDIGDVFHLAPE------SFEGLRGFADKKIEQILRGLEAARDRPLWRLLV 531

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            L IRHVG   AR LA+   S    A                L  V  VG  IA A+V++
Sbjct: 532 GLSIRHVGPTAARGLARELRSLDAIATAP----------AERLAAVDGVGPKIADAVVDW 581

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           + +PR+   V  +                  ++   +V TGTL    R  A E V   G 
Sbjct: 582 FADPRHRDIVARIASGGVRLADEGAGEGPGPLDGVVVVITGTLDGWSRDTATEAVQSRGG 641

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            V+  +S+KT  ++ G +PG SK +KA+ L + +++E  F  LL+      R
Sbjct: 642 KVTGSVSKKTTFVVAGADPGASKYDKARTLKIPLLDEAGFAVLLRDGADAAR 693


>gi|322376748|ref|ZP_08051241.1| DNA ligase, NAD-dependent [Streptococcus sp. M334]
 gi|321282555|gb|EFX59562.1| DNA ligase, NAD-dependent [Streptococcus sp. M334]
          Length = 652

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 212/700 (30%), Positives = 356/700 (50%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEVAHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ ++ F
Sbjct: 115 ISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRSSF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q ++L
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A     I  +  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 KHLEQLGFVVNPKRILAENIDEIWDFIQEVGQERDNLPYDIDGVVIKVNDLASQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRISEEKL-DIPTNCPSCD 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F + 
Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLFATN 452

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                ++  ADI+ L+            + G  + S   LY +I   +  S E+ +F LG
Sbjct: 453 ----LVKDVADIYRLKEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +++ S +N AQ           D   +  +  +G +IA+++  ++  
Sbjct: 503 IRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   +  L +       +       + +    +V TG L++++R +A+  +  LGA V
Sbjct: 553 EGSEILLRELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652


>gi|333030674|ref|ZP_08458735.1| DNA ligase [Bacteroides coprosuis DSM 18011]
 gi|332741271|gb|EGJ71753.1| DNA ligase [Bacteroides coprosuis DSM 18011]
          Length = 667

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 216/707 (30%), Positives = 354/707 (50%), Gaps = 48/707 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A+  +  L + +   +  YY  ++P I D E+D L +    +    P     +DPN P +
Sbjct: 3   AKDRIDELRKYLHQQNYKYYILNQPEISDKEFDDLLKELQDLEKKNPQY---DDPNSPTH 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +IG +++    +  H  P LSL   ++  ++ +F  R+ +              E K DG
Sbjct: 60  RIGSDIDKRFTQKEHKYPMLSLANTYSETEVAEFYERVKKALG---SQPFELCCELKFDG 116

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195
           T I++ Y+ GK V A  RGDG  G+ V+  ++ I TIP VL+  N P+  E+RGE+ +  
Sbjct: 117 TSISLTYQHGKLVEAVTRGDGTRGDMVTDNVKTIRTIPLVLNGDNYPDEFEIRGEILMPW 176

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
             F  LN E  A     +ANPRNAASG L+  N + +                +   G Y
Sbjct: 177 VVFEELNAEKEAREEPLFANPRNAASGTLKLQNSSVVASRKLDAYLYYLLGENLPYDGHY 236

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L++    GF +++ +R+  T   +  +     + R  LP   DG+V KV+  + Q+ L
Sbjct: 237 ENLEEASKWGFKISSEMRKCKTLQEVYDFIRYWDTARKDLPVATDGIVIKVNSIAQQEGL 296

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  ++A TRL ++  Q+GRTG +TPVA L+ V + G ++  A+LHN
Sbjct: 297 GYTAKSPRWAIAYKFQAEEARTRLNEVTYQVGRTGAITPVANLDAVQLSGTVVRRASLHN 356

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFC 434
           ED I+GL           D+ +GD V V++ GE+IPK+  +  + R         F   C
Sbjct: 357 EDIIRGL-----------DLHIGDMVYVEKGGEIIPKITAVDTDARDEHLGPKVEFIKKC 405

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +VR          AAH C     C  Q   R+ HF+SR A NI+GLG + +D F
Sbjct: 406 PECGTDLVRYEGE------AAHYCPNETGCPTQIKGRIVHFISRRAMNIDGLGPETVDLF 459

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       +   AD++ L + Q         +   GD S  N+   I + + +   R +
Sbjct: 460 YRE----GLLHNAADLYQLTKEQILG------LERMGDTSANNIIKGIEESKKVPFARAL 509

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGIR VG  +A+ LAK + +  + A+               LI +  +G+ IA++I+ 
Sbjct: 510 FALGIRFVGETVAKKLAKAFKNIGDLAKASQ----------EELISIDEIGEKIAESIIN 559

Query: 615 FYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           ++    N   V+ L++             N ++++E   +V +G  +   R++ +  + Q
Sbjct: 560 YFSKEENRIMVQQLVEYGVQLHQNEEEVANQTNKLEGAAIVISGVFKIHSRNEYKALIEQ 619

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G      +S KTD ++ G+N G +KLEKA++LG+KI++EE+FL L+
Sbjct: 620 NGGRNVGSISSKTDYVLAGENMGPAKLEKAEKLGIKIISEEEFLLLI 666


>gi|289704853|ref|ZP_06501270.1| DNA ligase (NAD(+)) [Micrococcus luteus SK58]
 gi|289558349|gb|EFD51623.1| DNA ligase (NAD(+)) [Micrococcus luteus SK58]
          Length = 797

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 226/799 (28%), Positives = 353/799 (44%), Gaps = 99/799 (12%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
              + +     R E   L + +      YYQ   P I D+EYDAL RR + +    P+L 
Sbjct: 11  PDPQDIPAADLRAEYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLEDLEALHPELV 70

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-KDDNS 125
                + P  ++GGE++ +   V H     SLE +++IE+L  +  R  +   + +   +
Sbjct: 71  ---SNDSPTQEVGGEVSEAFAPVRHGARMYSLEDVFSIEELEVWFRRAAQALTQVRPGVA 127

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184
             + +E KIDG  + +RY  G+ V AA RGDG +GEDV+A +R I  IP  LS    P  
Sbjct: 128 PRWLVEVKIDGLAVALRYRDGRLVQAATRGDGVTGEDVTANVRTIGDIPHELSGEGWPAE 187

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
            EVRGEV++S   F  LN      G+ P+ANPRNAA+G LR+ +P     R L  FVHG+
Sbjct: 188 FEVRGEVFMSSAAFAELNARRAEEGQTPFANPRNAAAGALRQKDPAVTAQRPLAMFVHGI 247

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI-----VSYYNEMKSIRSTLPYD 298
           G       + Q+E+   +   G PV+   R+            V+   E    R  L ++
Sbjct: 248 GSVEAFGLESQHEVYDALAGWGLPVSPYTRRVEGADEEALAAVVAVIEEYGRRRHELIHE 307

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V K D F+ Q+ LG  +R PRW +++K+  ++  T L DI + +GRTG +TP A +
Sbjct: 308 IDGIVLKADAFADQRYLGHTSRVPRWAVAYKYPPEEVHTLLRDIAVSVGRTGRVTPFAVM 367

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G+ ++ ATLHN+D +K            + + +GD V+V++AG+VIP+VV  ++
Sbjct: 368 EPVTVAGSTVSLATLHNQDVVK-----------AKGVLIGDTVVVRKAGDVIPEVVGPVL 416

Query: 419 NERHP------DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472
             R        + + F  P+ CP C + +         +     RC    +C AQ   R+
Sbjct: 417 PLREKAIEAGRELREFVMPTHCPSCGTPLA-----PAKEGDVDLRCPNARSCPAQLAGRV 471

Query: 473 KHFVSRDAFNIEGLGKQQLDFFFK-------------SEDPAFSIRIPADIFTLQRRQQT 519
           +H  SR AF++E LG++   +  +               +    I   A IF L      
Sbjct: 472 EHLASRGAFDVEALGEEAARWLVQGPGEDPAEHEGQVRPEGPGPITAEAQIFDLASGTPE 531

Query: 520 STTKIENILG------------FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG---- 563
             T      G                  T +   +      +L+ + F+ G         
Sbjct: 532 EITGPRGEDGLTDLQRSLGEVRVWREGRTKVDGRMVPSGVFTLKPYFFTAGTAKRPSAPT 591

Query: 564 -------------------------------AEIARSLAKYYLSYQNFAQEINNIIAHNN 592
                                             ARSLA  + S            A   
Sbjct: 592 ANTLRLFDELEKAKSQPLWRTLVALSIRHVGPTAARSLATAFGSMA------ALRAAAEA 645

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
            D   L  +  VG IIA A++E++    +   V+             +++    +E   +
Sbjct: 646 GDRDRLAEIDGVGPIIADALIEWFAEDWHREIVDRWAAAGVVMEDEQDESTPRTLEGLTV 705

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TG+L+   R  A+E +   G   S  +S+KTD ++ G+  GSKL+KAQ LGV +++E 
Sbjct: 706 VVTGSLEGFSRDSAKEAILVRGGKASGSVSKKTDFLVAGEAAGSKLDKAQSLGVPVLDEA 765

Query: 713 QFLFLLQQYNTTLRIHDDD 731
            F  LL      +R  D D
Sbjct: 766 GFTALLAGGADAVRPADTD 784


>gi|189499438|ref|YP_001958908.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides BS1]
 gi|254781285|sp|B3EM49|DNLJ_CHLPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189494879|gb|ACE03427.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides BS1]
          Length = 684

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 225/725 (31%), Positives = 365/725 (50%), Gaps = 54/725 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +QA  E+  L +EI  H+  YY  ++P I D +YDA+  +  A+   FP+L  S   
Sbjct: 1   MDKKQAVAEIIRLREEIDRHNYRYYVLARPEISDFQYDAMLEKLVALEGEFPELKTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG +      V H  P LSL   ++IE++ +F  R+ +   ++  +S  F  E
Sbjct: 58  DSPSQRVGGGITKEFPTVEHREPMLSLSNTYSIEEVGEFYHRVVKLLPEEHRDSPEFVAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----------NI 181
            K DG  +++ Y  G  V  A RGDG  G+D++  IR I ++P  L              
Sbjct: 118 LKFDGVAVSLLYRDGLLVRGATRGDGSQGDDITGNIRTIRSVPLRLGNPSGSGEGVERYE 177

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVH 241
              IEVRGEV+++K DF  LN+       + +ANPRNA +G L+  +  +++R    FV 
Sbjct: 178 GREIEVRGEVFMTKTDFAVLNEGRPE--EERFANPRNATAGTLKLQDSGEVSRRKMVFVA 235

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYN-EMKSIRSTLPYDID 300
              K S        E L+ +  LGF      R   T   I  Y +   K   + LPY+ID
Sbjct: 236 YYLKESSAEIISHAERLELLERLGFYTGGEHRVCRTLKDIREYIDGWQKKRLTGLPYEID 295

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K++  +L+ +LG  ++SPRW I++KF  ++A T +  I  Q+GR G +TPVA LEP
Sbjct: 296 GIVLKLNNTALRDELGATSKSPRWAIAYKFPAERARTVIRSIVFQVGRLGTITPVAELEP 355

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G  ++ +TLHN + ++ L           D+R+ D V+++++GE+IPKV+ ++  +
Sbjct: 356 VRLAGTTVSRSTLHNLEEVERL-----------DVRLHDTVVIEKSGEIIPKVISVVEEK 404

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R P   P   P  CP C + +V+  N         + C     C AQ   R++HF SR+A
Sbjct: 405 RRPGTLPVVVPESCPSCGTPLVKPPNE------VHYYCPNSEGCPAQTKARIEHFASRNA 458

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I GLGK  ++    S      +    D++ L             +    + S  NL +
Sbjct: 459 MDINGLGKAIVEQLVSS----GMVVDAGDLYRLTPDLIM------RLDRQAEKSAGNLVN 508

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I K RN    R +F+LGIRHVG   AR LA  Y +     +              +L  
Sbjct: 509 AIAKSRNREYFRVLFALGIRHVGIATARELAGAYPTLDMLCKA----------SVEALSD 558

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQ 659
           V  VG +IA+++  F++ P     +E L +        + +K V+   +  K++FTG L+
Sbjct: 559 VTDVGPVIAESVHAFFRKPSATAMIEKLREAGVRLEAEKTKKPVNLNFDGMKVIFTGALE 618

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  R +A   V + G    A +S+ T++++ G  PGSKLEKA++LGV+++ E +F  +L 
Sbjct: 619 RYTRDEAAGLVRERGGKTVASVSKNTNLVVYGKEPGSKLEKARKLGVRVITESEFEEMLG 678

Query: 720 QYNTT 724
           +  + 
Sbjct: 679 EVGSN 683


>gi|284166901|ref|YP_003405180.1| DNA ligase, NAD-dependent [Haloterrigena turkmenica DSM 5511]
 gi|284016556|gb|ADB62507.1| DNA ligase, NAD-dependent [Haloterrigena turkmenica DSM 5511]
          Length = 692

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 239/722 (33%), Positives = 368/722 (50%), Gaps = 50/722 (6%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             P+  LS ++AR+++  L + I  HD  YY  S P+I D  YDAL  R   +  AF   
Sbjct: 20  FAPVGELSEDEAREQVELLREAIREHDRRYYVESDPVIADRTYDALFARLRDLEDAF--- 76

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              E P+ P   +GGE       V H  P LS+++     D+R+F  R+ R     +   
Sbjct: 77  -GLEHPDSPTRSVGGEPLEEFETVEHVAPMLSIDQSGEEADVREFADRVQR-----EVGD 130

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + +  EPK DG  +   YE G+   AA RGDG  G+DV+   R I ++P+ L  + PE +
Sbjct: 131 VDYVCEPKFDGVSMEFVYEDGRLERAATRGDGREGDDVTRNARTIGSVPQKLHGDYPEFL 190

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245
            VRGEVY+ K+ F A N E I  G +P+ANPRNA +G +R+L+P+ +             
Sbjct: 191 AVRGEVYMPKDAFQAHNRERIERGEEPFANPRNATAGTIRQLDPSIVADRPLEVFFFDVL 250

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            +          L++    G  V + V  A+     ++Y + M   R  L Y+IDG V K
Sbjct: 251 EASDLEDSHSAELERFPDWGLRVTDHVELADDIDEAIAYRDRMLEARDDLNYEIDGTVIK 310

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   +++LG  AR  R+  ++KF  +   T ++D+ +Q+GRTG LTPVA LEPV++GG
Sbjct: 311 VDDRESREELGRTARHDRYAFAYKFPARAEVTPIVDVAVQVGRTGRLTPVALLEPVDVGG 370

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ A+LHN D I+            +++ VGD V V+RAG+VIP V +++        
Sbjct: 371 VTVSRASLHNPDEIE-----------EKNVNVGDTVRVQRAGDVIPYVEEVVEK---DSE 416

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
             +  P  CP+C S V         +      CTGGLAC AQ    ++++   D  ++EG
Sbjct: 417 GHYDLPDRCPVCDSAV--------ERDGPMAFCTGGLACDAQLRRSIEYYAGDDGLDLEG 468

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++ +         A  +   AD++ L R        + ++ G+G+ S  N+   I   
Sbjct: 469 LGEKSVRQLVD----AGLLESVADLYELDRED------LTDLEGWGETSAENVLAEIEAS 518

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R   L  F+ +LGI HVG   AR LA+ + +++ F +          D+   L  VP VG
Sbjct: 519 REPPLAEFLSALGIPHVGPTTARELAREFGTFEAFREAAE-------DEPERLEDVPDVG 571

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           + +A+ + EF+ +  N  AV+ LL+ VSP     E     E+E    VFTG+L+ + R +
Sbjct: 572 ETVAEQLHEFFTSEANAAAVDDLLEHVSPQESDLETGGD-ELEGLTFVFTGSLEGMTRGE 630

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           AQE V   GA  +  +S  TD ++VG+NPG +K + A    V I++E++F  LL  Y   
Sbjct: 631 AQEAVEAHGANATGSVSGNTDYLVVGENPGQTKRDDAAANDVPIIDEDEFRELLAGYGID 690

Query: 725 LR 726
           L 
Sbjct: 691 LE 692


>gi|163757008|ref|ZP_02164114.1| DNA ligase [Kordia algicida OT-1]
 gi|161323012|gb|EDP94355.1| DNA ligase [Kordia algicida OT-1]
          Length = 665

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 210/708 (29%), Positives = 357/708 (50%), Gaps = 46/708 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   +++L++L  E+  H+  YY      I D E+D   +    +    P+     DPN 
Sbjct: 1   MRNIQEKLTALRDELREHNYNYYVLDNATISDYEFDMKLKELQELEAKHPEF---HDPNS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG++  +   + H     SL+  ++ EDL  +  RI +       +++ +T E K
Sbjct: 58  PTLRVGGQITKNFNTIAHEYRMYSLDNSYSKEDLLDWEKRIEKILGV---STVEYTCELK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  + + YE GK + A  RGDG  G++V+  I+ I T+P  L  + P   ++RGE+ +
Sbjct: 115 YDGASMNLTYENGKLIKAVTRGDGFQGDEVTNNIKTIKTVPLQLKGDYPPKFDIRGEIIL 174

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
             + F  +N+E +A G  PY NPRN ASG L+  + +++ +     +    K   +    
Sbjct: 175 PLDGFKKMNEERVANGEDPYMNPRNTASGSLKLQDSSEVAKRPLECLLYNIKGERLPIAT 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q+E L+K R  GF V    + A     I+ + N  ++ R  L Y+IDG+V KV+    Q+
Sbjct: 235 QFESLEKAREWGFKVPTVAKVAKNVDEILQFVNYWEANRHELKYEIDGVVIKVNNLQYQE 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +++PRW +++KF  +Q +T L +I  Q+GRTG +TPVA L+PV + G  +  A+L
Sbjct: 295 ELGYTSKAPRWAMAYKFKAEQVATVLNEITYQVGRTGAITPVANLQPVLLAGTTVKRASL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I  L           DIR  D V V++ GE+IPK+V +  + R  D+    + + 
Sbjct: 355 HNADQIAKL-----------DIRERDTVFVEKGGEIIPKIVGVNFDLRPEDSTETVYATE 403

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + + R          A H C     C+ Q + R++H++SR A +IEGLG + +  
Sbjct: 404 CPECHTPLERKEGE------AQHYCPNVAGCTPQIVGRIQHYISRKAMDIEGLGGETVAL 457

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       I   AD++ L   Q         +    + S  NL + I   + I  ER 
Sbjct: 458 LVQE----GLITNYADLYELTTAQVI------PLERMAEKSAENLINGIEASKKIPFERV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +++LGIR+VG  +A+ LAK+Y S        +N           L+ V  +G  IA+++ 
Sbjct: 508 LYALGIRYVGETVAKKLAKHYKSIDALMNASSN----------DLVNVDEIGVKIAESVA 557

Query: 614 EFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +F+    N+  +E L K            + ++  +  K  V +G  +K+ R++ ++ + 
Sbjct: 558 QFFAEDVNLQMIERLKKFGVQLEFSAEQLEGLTETLLGKSFVVSGVFEKVSRNELKKLIE 617

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
             G  VS+ +S KT  ++ GD  G SK EKA++L + I+ E++FL ++
Sbjct: 618 NNGGKVSSSISSKTSFVVAGDKMGPSKREKAEKLNIPIITEDEFLNMI 665


>gi|83816597|ref|YP_445022.1| DNA ligase, NAD-dependent [Salinibacter ruber DSM 13855]
 gi|123739757|sp|Q2S459|DNLJ_SALRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83757991|gb|ABC46104.1| DNA ligase, NAD-dependent [Salinibacter ruber DSM 13855]
          Length = 690

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 219/702 (31%), Positives = 367/702 (52%), Gaps = 49/702 (6%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           + +H+  YY    P++ D+EYD L ++   +   +P L   + P+ P +++GG +   L 
Sbjct: 32  LRHHNYRYYVLDAPVVSDAEYDRLFQQLQTLEAEYPVL---QTPDSPTHQVGGPVRDELG 88

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
            VTH  P LSL+ ++  +++R F         ++   ++ +  EPK DG  + + YE G+
Sbjct: 89  TVTHPAPMLSLKAVYEEDEVRNFAETCREELGRE---TVTYIAEPKFDGLAVELIYEDGR 145

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYISKNDFLALNDE 204
            V  A RGDG +GE+++A ++ I  +P  L      +P+ + VRGE Y+ K++F A N  
Sbjct: 146 LVQGATRGDGETGEEITANVKTIKGVPLRLRDDARPVPDRLVVRGEAYMRKDEFNAFNRR 205

Query: 205 MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
               G+K +ANPRNAA+G LR+L+      R L  + + +            E+L+ +  
Sbjct: 206 REEEGKKVFANPRNAAAGSLRQLDSNITARRPLRIYFYEIAPVDGRDFATHAEVLEALPE 265

Query: 264 LGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
            G     + +R+ +     ++++  +   R  LPY+IDGLV KV++F   + LG R R P
Sbjct: 266 WGLRVCEDHIRRCDGIDAALAHHAALVDRRDDLPYEIDGLVIKVNDFDGHETLGVRDRDP 325

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           RW  ++KF  ++A+T + D+ +Q+GRTG +TPVA L PV +GG  +T A+LHN++ I   
Sbjct: 326 RWAAAYKFPPRRATTSIEDLFVQVGRTGRITPVAVLAPVEVGGVEVTRASLHNQNEIDR- 384

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                     +DIR+GD VL++RAG+VIP+VV +I +ER     P+  P  CP+C S VV
Sbjct: 385 ----------KDIRIGDTVLIERAGDVIPQVVKVIEDERDGTEAPYHIPDACPVCGSEVV 434

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
              + K         CTGG+ C AQ  ERLKH+ SR+A +IEGLG ++ +        A 
Sbjct: 435 LSDDKKQA------FCTGGMTCPAQFRERLKHYASREATDIEGLGDKRAEQLID----AG 484

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            I+  +D++ L++           +  + D S  NL D I       L+RF+++LGI  V
Sbjct: 485 LIQTISDLYELEKADL------LQLERYADKSAQNLIDEIEASLEQDLDRFLYALGIPLV 538

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G+  AR LA+++ +                 D  +L  +  +G  +A +I  F+ +  N 
Sbjct: 539 GSATARLLAQHFDTLDALVDA----------DEDALTTIDDIGPEVAHSIATFFADDANR 588

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             ++ +          + ++ +  +E    VFTG+L+   R   Q +V Q GA  ++ +S
Sbjct: 589 GVIDEMRDAGLTLTNPYAEDAAR-LEGLTFVFTGSLEGWTRSAVQRFVEQHGANATSSVS 647

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             TD ++ G   GSK + A   G+ +++E+ F  LL++    
Sbjct: 648 GNTDYVVAGPGAGSKRDDADDRGIPVLDEDAFHALLREQGID 689


>gi|225849186|ref|YP_002729350.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium azorense Az-Fu1]
 gi|254781434|sp|C1DW63|DNLJ_SULAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225644062|gb|ACN99112.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 701

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 253/734 (34%), Positives = 401/734 (54%), Gaps = 59/734 (8%)

Query: 2   KKRQLI--PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59
           K R+ +   I+++  ++A   +  L + I +HD  YY  ++P+I D EYD L +    I 
Sbjct: 13  KTREFLNLDIKSIDRKKAESIIEDLREVIRFHDWRYYVLAQPVISDYEYDKLFKLLKDIE 72

Query: 60  HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
             +PDL     P+ P  ++  E+     +V H  P LSL+  +N  DLR F  R+     
Sbjct: 73  SKYPDLI---TPDSPTQRVPSEITKVFPQVKHLTPMLSLDNSYNEADLRDFDRRVRELTG 129

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
            +    I + +EPK DG  I++ YEK  F   A RGDG  GED++  ++ I +IP     
Sbjct: 130 LE---KIEYAVEPKFDGAGISLIYEKDLFKRGATRGDGEVGEDITNNLKVIKSIPLSAKF 186

Query: 180 NIPEI--IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYL 236
           +   I  +E+RGEV I K+ F  +N++ +  G   +ANPRNAA+G +R  +P +   R L
Sbjct: 187 SSYGIDKVEIRGEVLIRKDIFKRINEQRLEEGLPLFANPRNAAAGSIRLQDPKEVAKRGL 246

Query: 237 NFFVHGLGKTSEI-------FAKGQYEMLQKMRCLGFPVNNGV-RQANTFHGIVSYYNEM 288
             FV+ +    +          K   + ++ +  LGF     V +  N    ++ Y  E 
Sbjct: 247 EAFVYQITYAEKDGKNLLGTVLKKHSDNIKMLHLLGFKTPYEVLKVCNGIDEVIDYCREW 306

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
           +  R   PY+IDG+V KV++ SL ++LG  +  PRW I++KF  +QA+T+++D+  Q+GR
Sbjct: 307 ERKRDNYPYEIDGMVIKVNDISLYEKLGFTSHHPRWAIAYKFKARQATTKIIDVVFQVGR 366

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG +TPVA+L+PV IGG ++++ +L NED+I+            +DIR+GD VLV+RAG+
Sbjct: 367 TGAITPVAKLQPVEIGGVIVSSVSLFNEDFIR-----------EKDIRIGDTVLVERAGD 415

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           VIP VV +I   R  + +P  FP  CP C S +V+ L        A +RC   + C AQ 
Sbjct: 416 VIPYVVMVIKEARTGNEKPIEFPKNCPSCGSPLVKPLGE------AVYRCIN-INCPAQV 468

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
           +ER+ HF S+DA +I+GL +  +  F+K       ++   DI+ L  R       I+NI 
Sbjct: 469 IERIIHFASKDAMDIKGLSEATVKKFYK----LGLLKSIPDIYRLDFR------IIKNIQ 518

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
           GFG+ SV NL  +I + +N  L R I+ LGIR+VG   A++LA      ++         
Sbjct: 519 GFGEKSVNNLKQAIEESKNRPLYRLIYGLGIRYVGEVTAKTLASAVNCLEDL-------- 570

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
              N     L+++P +GD +A  I  F+ N +N+  ++ L KE+  ++   ++    ++ 
Sbjct: 571 --KNFTITDLMKLPDIGDKVATEIYNFFHNEQNLKMIQQL-KELGVNVCNPKEEKRGKLA 627

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVK 707
               VFTG L+   R KA+E V  LG  V   +S+K   ++VG+ PGSKL+KAQ++  +K
Sbjct: 628 GLNFVFTGALKCCSREKAKEIVESLGGNVLDTVSKKVHYLVVGEEPGSKLQKAQKIPTIK 687

Query: 708 IMNEEQFLFLLQQY 721
           I+NEE+FL ++ Q 
Sbjct: 688 IINEEEFLKMIGQQ 701


>gi|314934069|ref|ZP_07841432.1| DNA ligase, NAD-dependent [Staphylococcus caprae C87]
 gi|313653180|gb|EFS16939.1| DNA ligase, NAD-dependent [Staphylococcus caprae C87]
          Length = 667

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 241/714 (33%), Positives = 376/714 (52%), Gaps = 53/714 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  +  ++ L   ++ +   YY    P + DSEYD L      I    P+   +   + 
Sbjct: 1   MEDLQSRVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIDIEEKHPEYKTA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDLRKF  RI     K     + +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRDNIGK-----VEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y+ G+FV    RGDG +GED++  +R I  IP  +   +    EVRGE Y+
Sbjct: 113 IDGLAVSLKYQNGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--FEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   ++  A 
Sbjct: 171 PRRSFMNLNAEKEENGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTDFDAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E LQ +  LGF  N    +     G++ Y ++    R +L YDIDG+V KV++   Q
Sbjct: 231 TQSEALQGLDDLGFKTNQERERVADIDGVLDYIDKWTEKRESLSYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  ++LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVVSKLLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I++ R  DA+ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVKSILDRRPKDAETYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCDHELVRIEGE------VALRCINPK-CQAQLIEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +++E     I+  ADIF L+            +   G   V NL  +I K ++ SLE 
Sbjct: 453 QLYENE----LIKDVADIFYLKEEDL------LPLERMGSKKVENLLAAIEKAKDNSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +                     L+ +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAEKYETMDRLLDVTE----------EELVAIHDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      ++ L  +      +  K        E   K +V TG L+++ R +A +
Sbjct: 553 VTYLENEDIRALIQKLKDKNVNMNYKGIKTSEIEGHPEFNGKTIVLTGKLEQMTRSEATQ 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++   GA V+  +++ TDI+I G + GSKL KA++ G +I  E++F    ++ N
Sbjct: 613 WLEMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKFGKEIWTEDEFAKKQKESN 666


>gi|46447394|ref|YP_008759.1| NAD-dependent DNA ligase LigA [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|81626502|sp|Q6MAB5|DNLJ_PARUW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|46401035|emb|CAF24484.1| probable DNA ligase [Candidatus Protochlamydia amoebophila UWE25]
          Length = 665

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 236/703 (33%), Positives = 387/703 (55%), Gaps = 46/703 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K+   L  EI +H+  YY   +PII D E+DAL ++ + I  + P+         P  +
Sbjct: 4   QKDYEKLCHEIWHHNKLYYIEHQPIISDEEFDALLKKLEEIERSHPEWITEF---SPSQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +   +      V H  P LSL   ++ E++  FI R+ +   K+    + F++E K+DG 
Sbjct: 61  VNESLTSGFKTVAHRTPMLSLANTYSKEEIEDFIKRLQKLVGKR---QVEFSVELKMDGI 117

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKN 196
            IT  YE+G F     RG+G  G+D++  +R I  +P  LS    P+ +E+RGEV++ + 
Sbjct: 118 AITAIYEQGIFKRGITRGNGKRGDDITTNMRMIENLPLQLSGENLPDFLEIRGEVFMPRQ 177

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQY 255
            FL LN++ +  G   +ANPRNAA+G L+ L+P     R L    +GL + S    K Q 
Sbjct: 178 VFLQLNEQKLQDGEVLWANPRNAAAGSLKLLDPKMVAERRLAVVFYGLAEDSSASIKKQA 237

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E+    R +G P             I  +  E++S+R+ LPYDIDG+V K+++F  QK+L
Sbjct: 238 EVPSFFRSIGLPALEHHAYCQNIEQIWKFAEEIRSLRTILPYDIDGIVIKLNDFKDQKRL 297

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   +SPRW I++KFA +QA TR++DI +QIGRTG+LTPVA LEP+ + G+ I  A+L+N
Sbjct: 298 GVTGKSPRWAIAYKFAAEQAKTRIIDITVQIGRTGVLTPVAELEPIFLSGSTIARASLYN 357

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ++ ++            +DIR+GD V +++ G+VIPKV+++ +++R   +QP+  P +CP
Sbjct: 358 QEEVQR-----------KDIRIGDLVTIEKGGDVIPKVLNVELSQRPLHSQPWQMPLYCP 406

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C ++V+  +         A RC    +C+ QQ+ +L +FV + A +I+ +G++ +   F
Sbjct: 407 SCGTQVINIIGE------VAVRCPNEDSCTEQQIRKLIYFVGKQAMDIKHMGEKIVIQLF 460

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I +P+DIF L   Q +       +  F   ++ NL  SI + +++SLERFI 
Sbjct: 461 QK----GFIHLPSDIFALTEGQIS------QLTNFKTKAIQNLMRSIEESKHVSLERFIM 510

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +L I+++G   A  LA    + +   Q               LI++  VG  +AQA+VE 
Sbjct: 511 ALEIKYIGIGTAELLAARAGTIETLMQLNE----------EDLIKIEGVGGKVAQAVVEH 560

Query: 616 YQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +QNP++   V  LL+    P     +   +   + K  V TG+L+   R  A   + + G
Sbjct: 561 FQNPKHRQEVYRLLELGVCPQSKTVQIFTNHAFQGKIFVLTGSLEHYTRQSAASLIKERG 620

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             VS  +SRKT+ ++ G  PGSKL+KA+ LG+ ++NE++F+ L
Sbjct: 621 GKVSDSVSRKTNYVVAGAEPGSKLDKARTLGIPVLNEKEFISL 663


>gi|70726048|ref|YP_252962.1| DNA ligase [Staphylococcus haemolyticus JCSC1435]
 gi|84028902|sp|Q4L7L9|DNLJ_STAHJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|68446772|dbj|BAE04356.1| DNA ligase [Staphylococcus haemolyticus JCSC1435]
          Length = 667

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 239/712 (33%), Positives = 370/712 (51%), Gaps = 53/712 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            +  ++ L   ++ +   YY    P + DSEYD L R    I  A P+      P+ P  
Sbjct: 4   IKSRVNELHDLLNQYGYEYYVQDNPSVPDSEYDKLLRELIDIEEAHPEFK---SPDSPTV 60

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GGE+  S  KV H  P LSL   +N ++LR+F  RI          S+ +  E KIDG
Sbjct: 61  RVGGEVQSSFEKVNHDTPMLSLGNAFNEQELRRFDQRIREQVG-----SVEYMCELKIDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             ++++Y +G+FV    RGDG +GED++  +R I  IP  ++  +    EVRGE Y+ ++
Sbjct: 116 LAVSLKYVEGRFVQGLTRGDGTTGEDITENLRTIHAIPLKINEPLS--FEVRGEAYMPRS 173

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
            F+ LN+E      +P+ANPRNAA+G LR+L+P     R L+ F++ +   ++  A  Q 
Sbjct: 174 SFIRLNEEKEKNEEQPFANPRNAAAGSLRQLDPKLAAKRKLSVFLYSVNDFTDFDATTQS 233

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
             L ++  LGF  N+   +     G++ Y  +    R  L YDIDG+V KV++   Q ++
Sbjct: 234 GALDELDRLGFKTNHERMRVGDIEGVLEYIEKWTKQREQLSYDIDGIVIKVNDIEQQDEM 293

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   +SPRW I++KF  ++  T L DI++ IGRTG++TP A L+PV + G  ++ A+LHN
Sbjct: 294 GYTQKSPRWAIAYKFPAEEVVTTLQDIELSIGRTGVVTPTAILDPVRVAGTTVSRASLHN 353

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED I             RDIR+GD V+VK+AG++IP+VV  I   R     P+S P+ CP
Sbjct: 354 EDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVKSITERRPEGTLPYSMPTHCP 402

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + +   +
Sbjct: 403 SCDHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLY 455

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   I   ADIF L             +   G   V NL  +I   +  SLE  +F
Sbjct: 456 HHN----VINDVADIFYLTEDDL------LPLERMGSKKVENLLKAIEDAKANSLEHLLF 505

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIRH+G + ++ LA+ Y +     +               LI +  +GD +AQ++V +
Sbjct: 506 GLGIRHLGVKASQVLAEKYETMDRLLEVTE----------EELISIHDIGDKLAQSVVTY 555

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVS---SE-IENKKLVFTGTLQKIQRHKAQEYVT 671
            +N      +E L  +    +    K          +NK +V TG LQ++ R +A  ++ 
Sbjct: 556 LENEDIKALIEKLKYKNVNMVYNGIKTSDIEGHPDFKNKTIVLTGKLQQLTRKEASAWLE 615

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             GA V++ +++KTD++I G++ GSKL KA++ G +I  EEQF+    + ++
Sbjct: 616 LQGAKVTSSVTKKTDLVIAGEDAGSKLTKAEKFGTEIWTEEQFVAKQNEISS 667


>gi|46199040|ref|YP_004707.1| NAD-dependent DNA ligase [Thermus thermophilus HB27]
 gi|81405933|sp|Q72JN8|DNLJ_THET2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|46196664|gb|AAS81080.1| NAD-dependent DNA ligase [Thermus thermophilus HB27]
          Length = 676

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 237/714 (33%), Positives = 377/714 (52%), Gaps = 55/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E+ARK ++ L   I YH+  YY  + P I D+EYD L R    +   FP+L     P
Sbjct: 1   MTLEEARKRVNELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPELK---SP 57

Query: 72  NGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G     +    V H     SL+  +N ++L+ F  RI R   ++      +T+
Sbjct: 58  DSPTEQVGARPLEATFRPVRHPTRMYSLDNAFNFDELKAFEERIERALGRE--GPFAYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE G  VY A RGDG  GE+V+  +  IPTIPR L    PE +EVRGE
Sbjct: 116 EHKVDGLSVNLYYEDGVLVYGATRGDGEVGEEVTQNLLTIPTIPRRLKGV-PERLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGLG--K 245
           VY+    FL LN+E+   G + + NPRNAA+G LR+ +P    +      F+  GLG  +
Sbjct: 175 VYMPVEAFLRLNEELEERGERIFKNPRNAAAGSLRQKDPRITAKRGLRATFYALGLGLEE 234

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                   Q+ +L  ++  GFPV +G  +A    G+ + Y +    R  LP++ DG+V K
Sbjct: 235 VEREGVATQFALLHWLKEKGFPVEHGYARAVGAEGVEAVYQDWLKKRRALPFEADGVVVK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +DE +L ++LG  AR+PR+ I++KF  ++  TRLLD+  Q+GRTG +TPV  LEPV + G
Sbjct: 295 LDELALWRELGYTARAPRFAIAYKFPAEEKETRLLDVVFQVGRTGRVTPVGILEPVFLEG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + ++  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++   R  + 
Sbjct: 355 SEVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGEE 403

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +P  +P  CP C  R++++           HRC   L C A++ E ++HF SR A +I+G
Sbjct: 404 RPIRWPETCPECGHRLLKE--------GKVHRCPNPL-CPAKRFEAIRHFASRKAMDIQG 454

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++ ++   +       ++  AD++ L++           +   G+ S  NL   I + 
Sbjct: 455 LGEKLIERLLEK----GLVKDVADLYRLRKEDLVG------LERMGEKSAQNLLRQIEES 504

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   LER +++LG+  VG  +AR+LA  + +     +     +    +            
Sbjct: 505 KRRGLERLLYALGLPGVGEVLARNLAARFGNMDRLLEASLEELLEVEEVGEL-------- 556

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
              A+AI+E  ++P     V  L +       +  +     ++    V TG L +  R +
Sbjct: 557 --TARAILETLKDPAFRDLVRRLKEAGVEMEAK--EKGGEALKGLTFVITGELSR-PREE 611

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV  + EE+   LL+
Sbjct: 612 VKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLE 665


>gi|306827641|ref|ZP_07460921.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes ATCC 10782]
 gi|304430204|gb|EFM33233.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes ATCC 10782]
          Length = 652

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 210/701 (29%), Positives = 351/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DS+YD L R    +  ++P+       + P  +
Sbjct: 2   KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVK-----AEFPNATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG+ GE+++  I+ I  IP  LS  +   I VRGE Y+S+  
Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSEPL--TITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N+     G   +ANPRNAA+G LR+L+ + +            + S      Q E+
Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTSVV-AKRQLATFLYQEASPTARNQQNEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+++++++R+        P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F  
Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F L
Sbjct: 450 --LAGFVHDVADIYQLTKEDFM------QLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRH+G++++R + +                         + R+  +G  IAQ++ ++++
Sbjct: 502 GIRHIGSKVSRLILEVCGDISALLTAKE----------EEIARIDGLGSTIAQSLTQYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  V+ L            + N  + +    +V TG L ++ R++A++ +  LGA 
Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD++I G + GSKLEKA+ LG++I +E+    L
Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRKL 652


>gi|94994051|ref|YP_602149.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10750]
 gi|123257616|sp|Q1J7G9|DNLJ_STRPF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94547559|gb|ABF37605.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10750]
          Length = 652

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 211/701 (30%), Positives = 351/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DS+YD L R    +  ++P+       + P  +
Sbjct: 2   KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVK-----AEFPNATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG+ GE+++  I+ I  IP  LS  +   I VRGE Y+S+  
Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSEPL--TITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N+     G   +ANPRNAA+G LR+L+   +            + S      Q E+
Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTAVV-AKRQLATFLYQEASPTARNQQNEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+++++++R+        P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F  
Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F L
Sbjct: 450 --LAGFVHDVADIYQLTKENFM------QLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRH+G++++R + + Y                       + R+  +G  IAQ++ ++++
Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKE----------EEIARIDGLGSTIAQSLTQYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  V+ L            + N  + +    +V TG L ++ R++A++ +  LGA 
Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD++I G + GSKLEKA+ LG++I +E+    L
Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRQL 652


>gi|94988258|ref|YP_596359.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS9429]
 gi|94992132|ref|YP_600231.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS2096]
 gi|122986939|sp|Q1JCM1|DNLJ_STRPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123080420|sp|Q1JMJ7|DNLJ_STRPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94541766|gb|ABF31815.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS9429]
 gi|94545640|gb|ABF35687.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS2096]
          Length = 652

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 211/701 (30%), Positives = 352/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DS+YD L R    +  ++P+       + P  +
Sbjct: 2   KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVK-----AEFPNATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG+ GE+++  I+ I  IP  LS  +   I VRGE Y+S+  
Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSEPL--TITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N+     G   +ANPRNAA+G LR+L+ + +            + S      Q E+
Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTSVV-AKRQLATFLYQEASPTARNQQNEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LAELAGLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+++++++R+        P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F  
Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F L
Sbjct: 450 --LAGFVHDVADIYQLTKENFM------QLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRH+G++++R + + Y                       + R+  +G  IAQ++ ++++
Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKE----------EEIARIDGLGSTIAQSLTQYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  V+ L            + N  + +    +V TG L ++ R++A++ +  LGA 
Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD++I G + GSKLEKA+ LG++I +E+    L
Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRQL 652


>gi|307708748|ref|ZP_07645210.1| DNA ligase, NAD-dependent [Streptococcus mitis NCTC 12261]
 gi|307615114|gb|EFN94325.1| DNA ligase, NAD-dependent [Streptococcus mitis NCTC 12261]
          Length = 652

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 214/700 (30%), Positives = 357/700 (51%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEVAHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVVGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q ++L
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASLSTRDSQEKVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 KHLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRISEEKL-DIPTNCPSCN 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSVVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ LQ            + G  + S + LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSASKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +++ S +N AQ           D   +  +  +G +IA+++  ++  
Sbjct: 503 IRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   +  L +       +       + +    +V TG L++++R +A+  +  LGA V
Sbjct: 553 EGSEILLRELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652


>gi|302037359|ref|YP_003797681.1| DNA ligase (NAD(+)) [Candidatus Nitrospira defluvii]
 gi|300605423|emb|CBK41756.1| DNA ligase (NAD(+)) [Candidatus Nitrospira defluvii]
          Length = 675

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 236/722 (32%), Positives = 368/722 (50%), Gaps = 70/722 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A + ++ L ++I +HD  YY   +P I D+EYD L R    +  A PDL      
Sbjct: 6   MPHQTAEQRIADLRRQIRHHDHLYYTKDRPEISDAEYDRLFRELVDLETAHPDLVTG--- 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G      L KV+H  P LSL+ I + +D+R F  R+ R     + + I +T E
Sbjct: 63  DSPTQRVGAPPLDELTKVSHEKPMLSLDSITDQDDVRAFDARMKREL---ETDQIVYTAE 119

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI--PEIIEVRG 189
           PK DG  + + Y++G FV  A RGDG  GEDV+  +R I  +P  L      P  + VRG
Sbjct: 120 PKFDGLSVELVYDRGAFVRGATRGDGMVGEDVTINLRTIRALPLQLDPQPSLPAHLVVRG 179

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248
           EVY+  ++F  LN  M   G + +ANPRNAA+G LR+L+     +R L    + +   S 
Sbjct: 180 EVYMRLDEFQVLNRRMTERGEEAFANPRNAAAGSLRQLDSRITASRPLTLTCYDIMAISG 239

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 ++ L  +   G PV    ++  +   ++S+     ++R +LP++IDG+V K+D 
Sbjct: 240 TAPPTHWDELDALAAWGLPVPEHRQRCRSIDEVLSFQQATDAMRDSLPFEIDGVVVKLDR 299

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q QLG ++RSPRW I++KFA ++  T + DI + +GRTG LTP+A L+PV +GG  I
Sbjct: 300 RTWQDQLGSKSRSPRWAIAYKFAPRKEITVIQDIAVSVGRTGTLTPLALLKPVEVGGVTI 359

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN D +             +D+RVGD V V+RAG+VIP + + +        +PF
Sbjct: 360 SRATLHNADEVAR-----------KDVRVGDTVKVERAGDVIPAIAERVPVPGETRQEPF 408

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP+C S V R+         A   CTG   C AQ    ++HF S+ A +I+G+GK
Sbjct: 409 VMPDHCPVCGSAVARE--------GAYFYCTGQTVCVAQLKGAIEHFASKSALDIDGMGK 460

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +            +R  AD+++L + Q  +      + GF D S   L +SI + +++
Sbjct: 461 KTIAQLVD----VGLVRDLADLYSLTKDQILT------LEGFADRSANLLLESIERSKSV 510

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL+R +  LGIR VG  IAR LAK + +                     L++V  +G  I
Sbjct: 511 SLDRLLMGLGIRQVGQHIARVLAKQFGTLSKLMSATQ----------EDLLQVREIGPEI 560

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKA 666
           + ++  F+   RN   +  L++          +N   S  +  K  VFTG L+   R +A
Sbjct: 561 SASLTSFFSEERNRAVIARLIERGLTIAPPTTENTTGSQHLAGKTFVFTGGLEGYSRDQA 620

Query: 667 QEYVTQLGAV----------VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +E V Q G                       ++ G +PGSKL++AQ+LGV+I+ E +F  
Sbjct: 621 KELVEQQGGQVSSSVSKKAS----------FVVAGTDPGSKLDQAQKLGVRILTEAEFTA 670

Query: 717 LL 718
           L+
Sbjct: 671 LV 672


>gi|50913936|ref|YP_059908.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10394]
 gi|81372213|sp|Q5XCY8|DNLJ_STRP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|50903010|gb|AAT86725.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10394]
          Length = 652

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 210/701 (29%), Positives = 351/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DS+YD L R    +  ++P+       + P  +
Sbjct: 2   KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVK-----AEFPNATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG+ GE+++  I+ I  IP  LS  +   I VRGE Y+S+  
Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSEPL--TITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N+     G   +ANPRNAA+G LR+L+ + +            + S      Q E+
Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTSVV-AKRQLATFLYQEASPTARNQQNEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+++++++R+        P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F  
Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F L
Sbjct: 450 --LAGFVHDVADIYQLTKEDFM------QLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRH+G++++R + + Y                       + R+  +G  IAQ++ ++++
Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKE----------EEIARIDGLGSTIAQSLTQYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  V+ L            + N  + +    +V TG L ++ R++A++ +  LGA 
Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD++I G + GSKLEKA+ LG++I +E+     
Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRKF 652


>gi|27468507|ref|NP_765144.1| DNA ligase [Staphylococcus epidermidis ATCC 12228]
 gi|81843559|sp|Q8CRU0|DNLJ_STAES RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|27316054|gb|AAO05188.1|AE016749_134 DNA ligase [Staphylococcus epidermidis ATCC 12228]
          Length = 665

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 242/708 (34%), Positives = 379/708 (53%), Gaps = 53/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +K +  L   ++ +   YY    P + DSEYD L      I   +P+       + 
Sbjct: 1   MQDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFK---STDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDLRKF  RI     K     + +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRDSIGK-----VEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  +   +    EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--FEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   +E  A 
Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L+++  LGF  N    + +   G+++Y  +  S R +L YDIDG+V KV++ S Q
Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRGSLSYDIDGIVIKVNDLSQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V++K+AG++IP+VV  I++ R  +++ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++++     I+  ADIF L+            +   G   V NL  +I K +  SLE 
Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDL------LPLERMGKKKVDNLLLAIEKSKEQSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +     +   +           LI +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SE-IENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +E L  +      +  K            K +V TG L+++ R++A E
Sbjct: 553 VTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIEGHPDFSGKTIVLTGKLEQMTRNEASE 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++   GA V++ +++ TDI+I G + GSKL KA++ G +I  E  F+ 
Sbjct: 613 WLKMQGAKVTSSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFIE 660


>gi|84500836|ref|ZP_00999071.1| DNA ligase, NAD-dependent [Oceanicola batsensis HTCC2597]
 gi|84390903|gb|EAQ03321.1| DNA ligase, NAD-dependent [Oceanicola batsensis HTCC2597]
          Length = 626

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 266/635 (41%), Positives = 393/635 (61%), Gaps = 13/635 (2%)

Query: 85  SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144
              K+TH++  +SL   ++  D+ +F  RI  +     D  + +T EPKIDG  +++RYE
Sbjct: 2   GFGKITHAVRMMSLANAFDDADVAEFDARIRSYLNLAADAPLAYTAEPKIDGLSLSLRYE 61

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204
            G+ V AA RGDG  GE+V+A  R I  IP  ++   PE++EVRGEVY+S  DF ALN  
Sbjct: 62  NGRLVQAATRGDGEVGENVTANARTIDDIPVEVTGA-PEVMEVRGEVYMSHADFAALNAR 120

Query: 205 MIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
               G K +ANPRNAA+G LR+L+      R L FF +  G  S   A  Q + ++++R 
Sbjct: 121 QAERGGKTFANPRNAAAGSLRQLDAQITRARPLRFFAYSWGDLSAPLAATQTQAIERLRR 180

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
           LGF  N   R+ +    ++ +Y  ++  R+TL YDIDG+VYKVD+ +LQ +LG R+ +PR
Sbjct: 181 LGFRTNPLTRRCDGPQDMLDHYRSIEEQRATLGYDIDGVVYKVDDLALQNRLGSRSTTPR 240

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           W ++HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG +++NATLHNEDYI G D
Sbjct: 241 WALAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGVVVSNATLHNEDYIAGRD 300

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
           + G+ +RGG+DIR+GD V V RAG+VIPKV D+ +++R  DA+P+ FP+ CP C S  +R
Sbjct: 301 SRGEEIRGGKDIRIGDWVQVYRAGDVIPKVADVDLSKRPDDAEPYVFPTKCPECGSDALR 360

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
           +         A  RCTGG+ C AQ +E+LKHFVSR AF+IEGLG +Q++ F+        
Sbjct: 361 EPG------DAVRRCTGGVVCPAQAVEKLKHFVSRAAFDIEGLGARQVEAFYTD----GW 410

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           I  PA+IFTL+ R       ++N  G+G+ S TNL+ +I+++R I L R +F+LGIRHVG
Sbjct: 411 ITEPAEIFTLEERYGRGLRALKNREGWGEKSATNLFRAIDEKRRIPLSRLLFALGIRHVG 470

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              +  +A +Y ++    + +    A        L  +  VG+++A ++   + NP    
Sbjct: 471 ESASALIANHYGTWDALEEAMVAA-AEPGQAREDLTGIDGVGEVMATSLTSAFANPAERA 529

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           +++ L+  +     R      S +  K +VFTGTL+K+ R +A+     LGA VS  +S 
Sbjct: 530 SMDRLVAHLDVQESRRAVAADSPVAGKTVVFTGTLEKMTRAEAKARAESLGAKVSGSVSA 589

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           KTD+++ G   GSK +KA +LGV+ M+E+ +L L+
Sbjct: 590 KTDLLVAGPGAGSKAKKAAELGVETMDEDGWLALI 624


>gi|21223850|ref|NP_629629.1| NAD-dependent DNA ligase LigA [Streptomyces coelicolor A3(2)]
 gi|7674017|sp|Q9Z585|DNLJ1_STRCO RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|4467245|emb|CAB37570.1| putative DNA ligase [Streptomyces coelicolor A3(2)]
          Length = 735

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 221/737 (29%), Positives = 352/737 (47%), Gaps = 62/737 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR+  + L ++I  H   YY    P++ D+E+D L R  + +    P+L     P  
Sbjct: 17  PAEARERHAQLAEQIEEHRFRYYVNDAPVVSDAEFDRLLRTLEELEERHPEL---RTPES 73

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G        V H    LSL+  +N ++L  +  RI R   +       F  E K
Sbjct: 74  PTQKVAGAYATEFTAVQHPTRMLSLDNTFNDDELAAWFERIARELGE---QEYHFLCELK 130

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YE+G+ V AA RGDG +GED++  +R I  IP  L+ +  P+++E+RGEVY
Sbjct: 131 VDGLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLAGDKVPDLVEIRGEVY 190

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
                F  LN  +   G KP+AN RNAA+G LR+ +P    +R L+  VHG+G       
Sbjct: 191 FPMEKFQELNARLNEAGDKPFANARNAAAGSLRQKDPRVTASRPLHMVVHGIGTLEGYSG 250

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                +    ++  G P +   R  +   G+  +       R ++ ++IDG+V KVDE  
Sbjct: 251 LTRLSQAYDLLKAWGLPTSPHNRVVDGLDGVREFIAYYGENRHSVAHEIDGVVVKVDEIR 310

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  AR+PRW I++K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ +  
Sbjct: 311 LQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSEVEF 370

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN++ +K            + + +GD V++++AG+VIP+++  + + R    + F  
Sbjct: 371 ATLHNQEVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVM 419

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK-- 488
           P+ CP C + +         +     RC    AC AQ  ER+ +   R+  +IE  G   
Sbjct: 420 PAECPECGTPLKAM-----KEGDIDLRCPNARACPAQLRERVAYLAGRECLDIEHFGGVV 474

Query: 489 ----------------QQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTK-----IE 525
                            + D F  + +    I+         L +R   +  +       
Sbjct: 475 AAALTGPLEPSEPPLVDEGDLFDLTVEKLLPIKAYVLDPDSGLPKRDPKTGEEKIATVFA 534

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
           N  G    +   L   I + +   L RFI  L IR+VG   A++LA+ + S     Q   
Sbjct: 535 NKEGEPKKNTLALLQHIEEAKTRPLARFINGLSIRYVGPVAAQALAREFRSIDRIEQATE 594

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNV 643
                       L     VG  IA A+ E++    +   V        P   R   E   
Sbjct: 595 ----------EELASTDGVGGAIATAVKEWFAVDWHREIVRKWKAAGVPLEDRSTGEDEG 644

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA Q
Sbjct: 645 PRPLEGLTVVVTGTLENFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQ 704

Query: 704 LGVKIMNEEQFLFLLQQ 720
           L V ++NE+ F  LL+Q
Sbjct: 705 LKVPVLNEDGFAVLLEQ 721


>gi|256824829|ref|YP_003148789.1| DNA ligase, NAD-dependent [Kytococcus sedentarius DSM 20547]
 gi|256688222|gb|ACV06024.1| DNA ligase, NAD-dependent [Kytococcus sedentarius DSM 20547]
          Length = 770

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 211/759 (27%), Positives = 346/759 (45%), Gaps = 79/759 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  R +   L + +  H   YY   +P I D+++DAL R  + +    P L     P  P
Sbjct: 37  EGVRHQWDDLARRVREHRFAYY-LGRPTISDADFDALFRELEQLESEHPGL---RTPESP 92

Query: 75  LNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
             ++G  +       V H+   LSL+ +++ E+L  +  R        D   + +  E K
Sbjct: 93  TQEVGAPVFETGFDAVDHAERMLSLDNVFSSEELAAWFQRARDAAGTTD---LHYLCELK 149

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN------------I 181
           IDG  + + YE G  V AA RGDG +GED++  +R I  +P  L               +
Sbjct: 150 IDGLAVNLTYEDGVLVRAATRGDGRTGEDITLNVRTIQGVPHRLERPADLADDATATVDV 209

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240
           P ++EVRGEV++    F  LN   +  G+  +ANPRNAA+G LR+ +P    +R L   V
Sbjct: 210 PPLVEVRGEVFLPLEKFAELNARQVEAGKAAFANPRNAAAGSLRQKDPRVTASRPLRMIV 269

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           HG+G         Q E  + +   G PV +  +  +T   I  Y       R    +++D
Sbjct: 270 HGIGAREGFDIARQSEAYEVLAGWGLPVTSHAKVLDTLEEIEQYVAYWGGHREGAEHELD 329

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K+DE ++Q+QLG  +R+PRW I+ K+  ++ +T+LLDI + +GRTG +TP   +EP
Sbjct: 330 GIVIKIDEVTVQRQLGSTSRAPRWAIAWKYPPQEVTTKLLDIAVNVGRTGRVTPFGVMEP 389

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G+ ++ ATLHN   ++            + + +GD V++++AG+VIP+++  + + 
Sbjct: 390 VTVAGSTVSMATLHNAHEVQR-----------KGVLIGDTVVLRKAGDVIPEILGPVADL 438

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R      F  P+ CP C + +         +     RC    +C +Q  ERL     R A
Sbjct: 439 RDGSETAFVMPTHCPSCGTELA-----PAKEGDKDIRCPNSRSCPSQLRERLFGLAGRGA 493

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL------------ 528
           F+IE LG +           A  +   A +F L       T+                  
Sbjct: 494 FDIESLGWEGAGALLD----AGVLTDEAGVFDLTAEDLLRTSLYTRAAKKAEAAAAEEGD 549

Query: 529 -------------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575
                                 L D++ + +   L R + +L IRHVG   AR+LA ++ 
Sbjct: 550 PEGVLPPGGVVDGRVLSAVGVRLLDNLQQVKEQPLWRVLVALSIRHVGPTAARALAGHFA 609

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QNPRNICAVEALLKEV 632
           + +                   L  V  VG  IA+A+ E++    N  +   V+      
Sbjct: 610 TMEAIRAA----------STEELAAVEGVGPTIAEAVTEWFGGEGNGWHRQIVDTWAAAG 659

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
                  ++++   +E   +V TG+L+   R +++E +   G   S  +S+KTD ++VG 
Sbjct: 660 VRMADERDESIERTLEGLTVVVTGSLEGWSRDESKEAILTRGGKASGSVSKKTDYVVVGA 719

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
           N GSK  KA++LG+ I++EEQF  LL          +DD
Sbjct: 720 NAGSKATKAEELGLPILSEEQFGELLATGRVEGVTPEDD 758


>gi|55981066|ref|YP_144363.1| DNA ligase [NAD+] [Thermus thermophilus HB8]
 gi|118780|sp|P26996|DNLJ_THET8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]; AltName: Full=Tth DNA ligase
 gi|94721|pir||A40363 DNA ligase (NAD) (EC 6.5.1.2) - Thermus aquaticus
 gi|155088|gb|AAA27486.1| DNA ligase [Thermus thermophilus]
 gi|155090|gb|AAA27487.1| DNA ligase [Thermus thermophilus]
 gi|55772479|dbj|BAD70920.1| DNA ligase [NAD+] [Thermus thermophilus HB8]
          Length = 676

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 238/714 (33%), Positives = 379/714 (53%), Gaps = 55/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E+ARK ++ L   I YH+  YY  + P I D+EYD L R    +   FP+L     P
Sbjct: 1   MTLEEARKRVNELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPELK---SP 57

Query: 72  NGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G     +    V H     SL+  +N+++L+ F  RI R   +K      +T+
Sbjct: 58  DSPTLQVGARPLEATFRPVRHPTRMYSLDNAFNLDELKAFEERIERALGRK--GPFAYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  VY A RGDG  GE+V+  +  IPTIPR L    PE +EVRGE
Sbjct: 116 EHKVDGLSVNLYYEEGVLVYGATRGDGEVGEEVTQNLLTIPTIPRRLKGV-PERLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGLG--K 245
           VY+    FL LN+E+   G + + NPRNAA+G LR+ +P    +      F+  GLG  +
Sbjct: 175 VYMPIEAFLRLNEELEERGERIFKNPRNAAAGSLRQKDPRITAKRGLRATFYALGLGLEE 234

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                   Q+ +L  ++  GFPV +G  +A    G+ + Y +    R  LP++ DG+V K
Sbjct: 235 VEREGVATQFALLHWLKEKGFPVEHGYARAVGAEGVEAVYQDWLKKRRALPFEADGVVVK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +DE +L ++LG  AR+PR+ I++KF  ++  TRLLD+  Q+GRTG +TPV  LEPV + G
Sbjct: 295 LDELALWRELGYTARAPRFAIAYKFPAEEKETRLLDVVFQVGRTGRVTPVGILEPVFLEG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + ++  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++   R  + 
Sbjct: 355 SEVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGEE 403

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +P  +P  CP C  R++++           HRC   L C A++ E ++HF SR A +I+G
Sbjct: 404 RPIRWPETCPECGHRLLKE--------GKVHRCPNPL-CPAKRFEAIRHFASRKAMDIQG 454

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG++ ++   +       ++  AD++ L++           +   G+ S  NL   I + 
Sbjct: 455 LGEKLIERLLEK----GLVKDVADLYRLRKEDLVG------LERMGEKSAQNLLRQIEES 504

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   LER +++LG+  VG  +AR+LA  + +     +     +    +            
Sbjct: 505 KKRGLERLLYALGLPGVGEVLARNLAARFGNMDRLLEASLEELLEVEEVGEL-------- 556

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
              A+AI+E  ++P     V  L +       +  +     ++    V TG L +  R +
Sbjct: 557 --TARAILETLKDPAFRDLVRRLKEAGVEMEAK--EKGGEALKGLTFVITGELSR-PREE 611

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV  + EE+   LL+
Sbjct: 612 VKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLE 665


>gi|306829554|ref|ZP_07462744.1| NAD-dependent DNA ligase LigA [Streptococcus mitis ATCC 6249]
 gi|304428640|gb|EFM31730.1| NAD-dependent DNA ligase LigA [Streptococcus mitis ATCC 6249]
          Length = 652

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 215/700 (30%), Positives = 361/700 (51%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   KRMNELVALLNRYASEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKELPHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGATRGDGSIGENITENLKRVKDIPLTLPEKL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q ++L
Sbjct: 173 DLVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A +   I ++  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 KHLEQLGFVVNPKRILAESMDEIWNFIQEVGQEREHLPYDIDGVVIKVNDLAGQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCD 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S+++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SQLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ L+            + G  + S + LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLKEDDF------LLLEGVKEKSASKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +++ + +N AQ           D   +  +  +G +IAQ +  ++  
Sbjct: 503 IRHVGSKASQLLLQHFHTIENLAQA----------DPEEVASIESLGSVIAQGLQTYFAT 552

Query: 619 PRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   ++ L + EV+ +         + +    +V TG L+++ R +A+  +  LGA V
Sbjct: 553 EGSKILLDELKEAEVNLAYKGQTVVADAALSGLTVVLTGKLERLTRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSVSKKTDLVVAGTDAGSKLQKAQELGIEVRDEAWLESL 652


>gi|282854737|ref|ZP_06264072.1| DNA ligase (NAD(+)) [Propionibacterium acnes J139]
 gi|282582319|gb|EFB87701.1| DNA ligase (NAD(+)) [Propionibacterium acnes J139]
 gi|314982008|gb|EFT26101.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA3]
 gi|315090823|gb|EFT62799.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA4]
          Length = 740

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 209/743 (28%), Positives = 339/743 (45%), Gaps = 74/743 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P  +
Sbjct: 21  RHHWTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPTQR 77

Query: 78  IGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G          V H    LSL+ ++  ++L ++I+R+     K  +    F  E KIDG
Sbjct: 78  VGAPQRVTDFAPVKHLERLLSLDNVFTRDELSEWISRVATAVGKIPN----FLCELKIDG 133

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVYISK 195
             + + Y  G+ V  A RGDG  GEDV+A +R I  IP+ L+ +     +EVRGEV+   
Sbjct: 134 LAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVFFPV 193

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF  LN  ++  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G         Q
Sbjct: 194 ADFADLNAALVEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFPSQ 253

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
                K+   G PV+   +       +  +       R    + IDG+V KVD+ SLQ++
Sbjct: 254 GHAYDKLAQWGLPVSPYFKIVEHADEVQEFVTRWGESRDEASHQIDGVVVKVDDVSLQRK 313

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  ATLH
Sbjct: 314 LGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVAVAGSTVEMATLH 373

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P  C
Sbjct: 374 NAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMPDHC 422

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +  + N          RC     C +Q  ER+    SR A +IE LG +     
Sbjct: 423 PSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAAIAL 477

Query: 495 FKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIENIL 528
              E+                       A    +  D        +RR+         + 
Sbjct: 478 TDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQPDDLAEVKVWRRRKVNGGPGPWQLE 537

Query: 529 GFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
            +                   ++D + K ++  L R + +L IRHVG   AR+LA ++ S
Sbjct: 538 PYFFTKATAKKPSAPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATHFGS 597

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
            +   +               L  V  VG+IIA+++  +++   +   +           
Sbjct: 598 VEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGVRMA 647

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N GS
Sbjct: 648 DDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGENAGS 707

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQ 719
           K  KA+ LG  I++E  F +LL+
Sbjct: 708 KETKARDLGRPILDEAGFRYLLE 730


>gi|326693831|ref|ZP_08230836.1| DNA ligase, NAD-dependent [Leuconostoc argentinum KCTC 3773]
          Length = 681

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 237/717 (33%), Positives = 374/717 (52%), Gaps = 51/717 (7%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
            +  PIE LS   A++E++ L+ +++ +   YY+   P++ D  YDAL  R  A+  AFP
Sbjct: 3   PEFTPIEQLSTSAAQQEVAQLQADLTEYGVAYYEQDAPLVEDHVYDALYARLVALESAFP 62

Query: 64  DLARSEDPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
                   + P   +GG +    L KV H  P LSL  ++++E+L  +  R  +    + 
Sbjct: 63  QFVTQ---DSPTQNVGGALTKSGLAKVEHPAPMLSLGDVFSLEELAAWDERTTKSLGFQS 119

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
                + LE KIDG  + + Y  G+ V A+ RG+G  GEDV+  ++ I  IP+ L+  + 
Sbjct: 120 ----PYNLELKIDGLAVALTYVDGRLVQASTRGNGTIGEDVTRNVKTIKAIPQQLTEPL- 174

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH 241
             IEVRGE+Y+ K  F ALN +  A G +P+ANPRNAA+G LR+L+      R L+ FV+
Sbjct: 175 -TIEVRGEIYMPKKSFAALNVQREADGLEPFANPRNAAAGSLRQLDAQVTKQRELSAFVY 233

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
              +   +    Q   L +   LG P +   +       I  +     + R TL Y IDG
Sbjct: 234 YTAEPEVLGVTTQSGALARFAELGLPTDTHNQVIEKMADIADFIATYTAKRDTLAYGIDG 293

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KV+    Q +LG   + PRW I++KF  ++A T + DI+  +GRTG +TP A ++PV
Sbjct: 294 VVVKVNALDNQVELGNTVKIPRWAIAYKFPPEEALTVVRDIEWTVGRTGAVTPTAVMDPV 353

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  +  A+LHN DY++            +DIR+GD V + +AG++IP+V  +I+++R
Sbjct: 354 QLAGTTVQRASLHNPDYLQ-----------QKDIRIGDTVTLHKAGDIIPEVGQVILSQR 402

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             D+  +  P  CP C S +V            A RC     C+AQ  E L HF SR+A 
Sbjct: 403 PADSTAYPIPVVCPACGSELVHISGE------VALRCINPF-CAAQIQEGLTHFASRNAM 455

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI G+G + +D   K    A  I+  A I+ L        T++ ++  F + S  NL  +
Sbjct: 456 NIAGMGPRVIDQLLK----ANYIKDVASIYRL------DMTQLLSLDKFQEKSAANLLAA 505

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I + +  SLER +F LGIR VGA+ AR +A+ + +    A+               +  +
Sbjct: 506 ITQSKENSLERLLFGLGIRLVGAKAARLVAEKFKTLSAIAEAT----------VPEIASI 555

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQ 659
             +G+ IAQ+IV+++ +P +   +  L         +   E + +S    KK+V TG L+
Sbjct: 556 DGIGEAIAQSIVQYFSHPESQQLLIELTAAGVNQTYLSDVEVDENSFFYGKKIVLTGKLE 615

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +  R  A +++   GA V+  +S KTD++I G + GSKLEKA  LGV +  E++FL 
Sbjct: 616 QSSRPAATKWLQDHGAQVAGSVSAKTDLLIAGADAGSKLEKATALGVLVWTEQEFLE 672


>gi|209559128|ref|YP_002285600.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes NZ131]
 gi|254781429|sp|B5XKP3|DNLJ_STRPZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|209540329|gb|ACI60905.1| DNA ligase [Streptococcus pyogenes NZ131]
          Length = 652

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 211/701 (30%), Positives = 351/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DS+YD L R    +  ++P+       + P  +
Sbjct: 2   KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQ---DSPTQQ 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVK-----AEFPNATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG+ GE+++  I+ I  IP  LS  +   I VRGE Y+S+  
Sbjct: 114 SISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSEPL--TITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N+     G   +ANPRNAA+G LR+L+   +            + S      Q E+
Sbjct: 172 FKAINEARQENGETEFANPRNAAAGTLRQLDTAVV-AKRELATFLYQEASPTARNQQNEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++  LGF VN   +  ++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+++++++R+        P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V   +        A RC   L C +     L+HF SRDA NI GLG   ++  F  
Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L +           + G  + S   L  +I   ++ S E+ +F L
Sbjct: 450 --LAGFVHDVADIYQLTKENFM------QLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRH+G++++R + + Y                       + R+  +G  IAQ++ ++++
Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKE----------EEIARIDGLGSTIAQSLTQYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  V+ L            + N  + +    +V TG L ++ R++A++ +  LGA 
Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD++I G + GSKLEKA+ LG++I +E+    L
Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRQL 652


>gi|300361107|ref|ZP_07057284.1| NAD-dependent DNA ligase LigA [Lactobacillus gasseri JV-V03]
 gi|300353726|gb|EFJ69597.1| NAD-dependent DNA ligase LigA [Lactobacillus gasseri JV-V03]
          Length = 668

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 214/715 (29%), Positives = 364/715 (50%), Gaps = 50/715 (6%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+  QA +++  L +++    + YY    PI+ D+ YD   +    +   FPDL  S
Sbjct: 1   MAVLTHNQASQKVDELRKKLDEWAEDYYAKDAPIVEDAVYDKAYQELVELEKRFPDLVTS 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +    ++GGE+   L KV H IP LS+  +++ ++L++F  RI +       + + +
Sbjct: 61  ---DSITQRVGGEIKSDLSKVEHPIPMLSMGDVFSKDELKEFDDRITKLVG----HPVAY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y  GK   A+ RG+G  GEDV+A  + I  IP+ L   +    EVR
Sbjct: 114 NVELKIDGLSLSLEYTAGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPEPL--TTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN E    G + +ANPRNAA+G LR+L+     +              
Sbjct: 172 GECYMEKEAFAKLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ + +M  LGF  N   R+  +   +  + +E  + R+ L Y IDG+V KVD+
Sbjct: 232 RNITSQHQAIDEMNRLGFHTNQTGRRLESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A + PV + G ++
Sbjct: 292 LSLQNELGNTVKVPRWEIAYKFPPEEQETIVKEIEWTVGRTGVVTPTAVMNPVQLAGTVV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN DY++            + +R+GD V + +AG++IP++  +++N+R  D++P+
Sbjct: 352 SRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLNKRPKDSEPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG 
Sbjct: 401 EIPNKCPSCGQDLVHLQDE------VALRCINPM-CPAQVEEGIIHFASRGAMNIMGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +      +     +   AD++ L   Q +       +  F D S+TNL  SI   +  
Sbjct: 454 RIVKQLIDKK----FVNDVADLYHLTNEQLS------QLDHFKDKSITNLLTSIENSKQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S E  +F LGI HVGA+ AR + + Y + +  +Q               LI +  +G+ I
Sbjct: 504 SAELLLFGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELISIDTIGETI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+++  ++  P     ++ L              E+   +  + K +V TG L    R +
Sbjct: 554 AESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSDFTRSE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +++
Sbjct: 614 FTKKLQNLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKIEK 668


>gi|307326508|ref|ZP_07605703.1| DNA ligase, NAD-dependent [Streptomyces violaceusniger Tu 4113]
 gi|306887916|gb|EFN18907.1| DNA ligase, NAD-dependent [Streptomyces violaceusniger Tu 4113]
          Length = 732

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 213/743 (28%), Positives = 350/743 (47%), Gaps = 62/743 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + R+  + L ++I  H   YY    P++ D+E+D L R  +A+    P L     P+ 
Sbjct: 10  PAEVRERHARLAEQIEEHRFRYYVKDAPVVSDAEFDKLMRELEALEEETPAL---RTPDS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G       +V H    LSL+  ++ E+L  +  RI +        +  F  E K
Sbjct: 67  PTQKVAGAYETDFTEVEHRERMLSLDNAFDDEELSTWADRIAKELG---SGAYHFLCELK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YE G+   AA RGDG +GED++  +R I  IP  L+ +  P ++EVRGEV+
Sbjct: 124 VDGLAVNLTYENGRLTRAATRGDGRTGEDITPNVRTIAKIPNRLTGDRVPALVEVRGEVF 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           +++  F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L+  VHG+G       
Sbjct: 184 LARERFEELNAGLVEAGKPPFANPRNAAAGSLRQKDPKVTASRPLDMVVHGIGARDGFDI 243

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL--PYDIDGLVYKVDEF 309
               +  + +   G P     +  +T   +  Y              ++IDG V K+DE 
Sbjct: 244 DRLSQAYELLHEWGLPTAAHFKVVDTIEAVREYIAYYGDSEHRHSVEHEIDGAVVKLDEI 303

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ +LG  +R+PRW I+ KF  ++ +T+L+DI + +GRTG +TP A +EP+ + G+ + 
Sbjct: 304 PLQGRLGSTSRAPRWAIAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPITVAGSEVE 363

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+D +K            + + +GD V++++AG+VIP+++  +V+ R    + F 
Sbjct: 364 FATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFV 412

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +         +     RC    +C AQ  ER+ +   R + +IE LG  
Sbjct: 413 MPATCPECDTPLQ-----PAKEGDVDLRCPNSRSCPAQLRERIFYLAGRKSLDIENLGYV 467

Query: 490 QLDFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI------------------------ 524
                 +  +P    ++   D+F L+  Q                               
Sbjct: 468 AAAALTQPLEPTEPPVKDEGDLFDLKIEQLLPIRSYVLDPDSGLPKRDPETGEAKVVTFF 527

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
               G    +   +  +I   +   L R I  L IRHVG   A +LA+ + S    A+  
Sbjct: 528 ATQKGEAKKNALAMLANIEAAKERPLARIITGLSIRHVGPVAATALAREFRSLDRIAEAD 587

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNV 643
              +A              VG  IA ++ E++    +   +E   +          E   
Sbjct: 588 EEELAAVE----------GVGSTIAASVKEWFAVDWHREILEKWRRAGVRLEEEGGEDEG 637

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              +E+  +V TGTLQ   R  A+E +   GA V+  +S+KTD ++VGDNPGSK +KA Q
Sbjct: 638 PRPLESLTVVVTGTLQSYTRDGAKEALQSRGAKVTGSVSKKTDFVVVGDNPGSKYDKAMQ 697

Query: 704 LGVKIMNEEQFLFLLQQYNTTLR 726
           + V +++E+ F  LL+Q     R
Sbjct: 698 VKVPVLDEDGFGVLLEQGPDAAR 720


>gi|315223028|ref|ZP_07864907.1| DNA ligase, NAD-dependent [Streptococcus anginosus F0211]
 gi|315187978|gb|EFU21714.1| DNA ligase, NAD-dependent [Streptococcus anginosus F0211]
          Length = 652

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 207/701 (29%), Positives = 349/701 (49%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L + ++ +   YY    P + DSEYD L      +   +P+L ++   + P ++
Sbjct: 2   KDRMLELVKLLNQYAHEYYTTDNPTVSDSEYDRLYHELLDLEQQYPELVQA---DSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  RI +     D   + +  E KIDG 
Sbjct: 59  VGGKVLEGFEKYQHQYPLYSLQDAFSREELEAFDVRIRK-----DFPKVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L L     + VRGE Y+ ++ 
Sbjct: 114 SISLMYEKGILVAGATRGDGSVGENITENLKRVKDIP--LVLPTAVNLTVRGECYMPRSS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N      G   +ANPRNAA+G LR+L+   +    N       + S   A  Q  +
Sbjct: 172 FDRVNRLRQENGEPEFANPRNAAAGTLRQLDTAIV-AKRNLATFLYQEASPTSATSQEAV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++   GF VN     A++   +  +  ++   R  LPYDIDG+V KV++  +Q++LG 
Sbjct: 231 LNQLSKNGFSVNERHILAHSMDEVWQFIGQIAQERDQLPYDIDGVVIKVNDLVMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR GD V+V +AG++IP V+ ++ ++R  + +    P  CP C
Sbjct: 351 YI-----------AEKDIRKGDTVIVYKAGDIIPAVLQVVESKRQSEEKL-EIPKNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC     C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 NSELIHFEDE------VALRCINPR-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFDQ 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           +     +   A I+ L             +  F + S   LY +I   +  S E+ +F L
Sbjct: 452 Q----LVNDVAGIYRLTVEDL------LQLENFKEKSANKLYTAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L K++   +  A+           +   +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKASQILLKHFHDLEQLAKA----------EKEEIAALDSLGMVIAESLSSYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  +  L +          +    + +    +V TG L+++ R +A++ +  LGA 
Sbjct: 552 QEGTHILLSELKEAGLNFTYLGEKVAADAVLSGLTVVLTGKLERLNRSEAKKKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V++ +S+KT +++ G + GSKL KAQ+LG+ I +E     L
Sbjct: 612 VTSSVSKKTSLVVAGADAGSKLTKAQELGIDIRDEAWLENL 652


>gi|33241290|ref|NP_876232.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|81663882|sp|Q7V9J2|DNLJ_PROMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33238820|gb|AAQ00885.1| NAD-dependent DNA ligase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 685

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 204/725 (28%), Positives = 360/725 (49%), Gaps = 60/725 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++     K +S L   ++  +  YY    P+I D+ +D L R    +   +P L     P
Sbjct: 1   MAETNHSKRISELRSLLNKANHAYYILDSPLIEDAVFDRLYRELIELEKQYPSLV---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G +       + H IP  SL+  +N ++L  + +R+ +  +           E
Sbjct: 58  DSPSQRLGNKPATKFESIKHRIPLQSLDNAFNFDELNYWHSRMQKHLKSHS----AMVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGE 190
            KIDG  + + Y  G     A RGDG  GE+++A ++ I +IP  L   N P  +E+RGE
Sbjct: 114 LKIDGNALALSYVNGVLTRGATRGDGAEGEEITANVKTIVSIPLSLHLQNPPAWVEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL------ 243
            +I    F++LN E +   ++ +ANPRNA SG LR+L+     +R+L+FF + +      
Sbjct: 174 AFIPNKVFISLNKERLKEEKQLFANPRNACSGTLRQLDSRIVASRHLDFFAYTIHLPDDW 233

Query: 244 --GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             G+T     KGQ+E L  ++  GF VN   +  +    +  +  + +  R  LPY  DG
Sbjct: 234 IPGETDPKKPKGQWEALLWLKAAGFRVNPNAKLISQPDQVEKFCIDWEKRRHQLPYTTDG 293

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V K+D+F LQK LG   ++PRW I+ K+  ++A T+L  +  Q GRTG +TPVA   P+
Sbjct: 294 IVIKIDDFKLQKTLGITQKAPRWAIALKYPAEEAPTQLNKLIFQTGRTGTVTPVAEFNPI 353

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG L++ ATLHN + +  L           DI  GD +++++AGE+IP+V+ +I   R
Sbjct: 354 PLGGTLVSKATLHNANRLSEL-----------DIHEGDTIVIRKAGEIIPEVIRVIKELR 402

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             +A+    P  CP C S+++++      K            C A     L+H+VS+ A 
Sbjct: 403 PNNAKKLVLPEKCPECNSKLLKETGEAATK-------CLNNDCPAILRGVLRHWVSKGAM 455

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI+G G + ++   K +     I+  A I+ L+ +       +EN+   G  S   L   
Sbjct: 456 NIDGFGTKLVEQLVKRK----IIKSIAGIYELKEK------NLENLERMGTKSAEKLLIE 505

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           IN  +     + ++ LGI H+G   A+++A+ + S    A               S+  +
Sbjct: 506 INNSKKQPWHKQLYGLGILHIGEANAKAIAEVFPSISLLADA-------AIASPESISNI 558

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-NVSSEI-------ENKKLV 653
             +G  I +++ +++    N   ++ L          +E+  + + +         K  V
Sbjct: 559 YGIGSEITESLHKWFNCSINQNLIKELKDLGIALERVNEEGAIDNILMQEKLQFSGKTFV 618

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGT+  + R   +E + + G  V++ +S KT+ ++ G+ PG+KL+KA++LG+K++NE++
Sbjct: 619 ITGTMPSLSRANLEELIEREGGKVNSSVSSKTNYLVAGEKPGNKLKKAKELGIKVINEQE 678

Query: 714 FLFLL 718
            + L+
Sbjct: 679 LMTLI 683


>gi|256380031|ref|YP_003103691.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827]
 gi|255924334|gb|ACU39845.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827]
          Length = 816

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/712 (32%), Positives = 352/712 (49%), Gaps = 42/712 (5%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
              AR    +L +E+  H   YY    P I D E+DAL R   ++  A P LA    P+ 
Sbjct: 43  PADARDRHRALAEEVRGHQFRYYVLDAPTISDGEFDALLRELQSLEDAHPGLA---TPDS 99

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG  +     V H    LSL+  ++ + LR +  R+     K+  ++  +  E K
Sbjct: 100 PTQQVGGTFSTEFTAVDHLERMLSLDNAFDEDGLRAWFERV----GKEVGDAARYLCELK 155

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRG 189
           +DG  I +RYE+G+ V A  RGDG +GEDV+  +R +  +P VL+       PE++EVRG
Sbjct: 156 VDGLAINLRYERGRLVRALTRGDGRTGEDVTLNLRTLRDVPEVLTGTDEWPVPELVEVRG 215

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EVY +  DFL LN +++  G  P+ANPRN A+G LR+ +P    +R L    HG+GK + 
Sbjct: 216 EVYFAVEDFLELNAKLVEAGLPPFANPRNTAAGSLRQKDPKVTASRRLRMVCHGIGKRAG 275

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q +    +R  G P +       TF  + +        R    ++IDGLV KVDE
Sbjct: 276 FELERQSDAYAALRAWGLPTSEHTAVVATFDEVWARVAHWGEHRHDAAHEIDGLVVKVDE 335

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ++LG  +R+PRW I+ K+  ++A+T LLDI +Q+GRTG +TP A +EPV + G+ +
Sbjct: 336 VPLQRRLGSTSRAPRWAIAFKYPPEEATTTLLDIGVQVGRTGRVTPFAIMEPVKVAGSTV 395

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN   +K            + + +GDR+++++AG+VIP+V+  +V+ R  DA+ F
Sbjct: 396 ARATLHNASEVKR-----------KGVLIGDRIVIRKAGDVIPEVLGPVVDVRPADAREF 444

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C   +         +     RC     C AQ  ERL +  SR A ++E LG 
Sbjct: 445 VMPASCPECGHALRPM-----KEGDVDIRCPNAEGCPAQLRERLAYLASRSALDVEVLGY 499

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +       SE         AD+F L            N  G    +   L +++   ++ 
Sbjct: 500 EGAAALASSEVYG----NEADLFDLTAEDLLRVDLFRNQDGALVTNGAKLLENLEAAKSQ 555

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L R + +L IRHVG   AR+LA  +   Q         +A              VG  I
Sbjct: 556 PLWRVLVALSIRHVGPTAARALAVEFGGVQAILDAEEADLAAAG----------GVGPTI 605

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A A+ E+   P     V          +   +  +  ++E   +V TGTL    R +A++
Sbjct: 606 AAAVREWALTPWRQEVVRRWAAAGVRMVDERDTTIRRDLEGLSIVVTGTLADFSRDEAKD 665

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +   G      +S+KT  +IVGDNPGSK +KA QL V +++E  F  LL++
Sbjct: 666 SILVRGGKAVGSVSKKTAFVIVGDNPGSKADKAAQLKVPVLDEAGFRVLLER 717


>gi|314923733|gb|EFS87564.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL001PA1]
 gi|315104373|gb|EFT76349.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA2]
 gi|327328187|gb|EGE69956.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL103PA1]
          Length = 740

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 209/743 (28%), Positives = 339/743 (45%), Gaps = 74/743 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P  +
Sbjct: 21  RHHWTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPTQR 77

Query: 78  IGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G          V H    LSL+ ++  ++L ++I+R+     K  +    F  E KIDG
Sbjct: 78  VGAPQRVTDFAPVKHLERLLSLDNVFTRDELSEWISRVATAVGKIPN----FLCELKIDG 133

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVYISK 195
             + + Y  G+ V  A RGDG  GEDV+A +R I  IP+ L+ +     +EVRGEV+   
Sbjct: 134 LAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVFFPV 193

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF  LN  ++  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G         Q
Sbjct: 194 ADFTDLNAALVEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFPSQ 253

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
                K+   G PV+   +       +  +       R    + IDG+V KVD+ SLQ++
Sbjct: 254 GHAYDKLAQWGLPVSPYFKIVEHADEVQEFVTRWGESRDEASHQIDGVVVKVDDVSLQRK 313

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  ATLH
Sbjct: 314 LGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVAVAGSTVEMATLH 373

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P  C
Sbjct: 374 NAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMPDHC 422

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +  + N          RC     C +Q  ER+    SR A +IE LG +     
Sbjct: 423 PSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAAIAL 477

Query: 495 FKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIENIL 528
              E+                       A    +  D        +RR+         + 
Sbjct: 478 TDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQPDDLAEVKVWRRRKVNGGPGPWQLE 537

Query: 529 GFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
            +                   ++D + K ++  L R + +L IRHVG   AR+LA ++ S
Sbjct: 538 PYFFTKATAKKPSAPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATHFGS 597

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
            +   +               L  V  VG+IIA+++  +++   +   +           
Sbjct: 598 VEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGVRMA 647

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N GS
Sbjct: 648 DDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGENAGS 707

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQ 719
           K  KA+ LG  I++E  F +LL+
Sbjct: 708 KETKARDLGRPILDEAGFRYLLE 730


>gi|332362528|gb|EGJ40328.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1056]
          Length = 652

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 220/701 (31%), Positives = 356/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   EERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  R+ +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRVRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N      G   +ANPRNAA+G LR+L+   +    N       + S   A  Q E+
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQANSQEEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+  LGF VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++LG 
Sbjct: 231 LNKLADLGFSVNPTHILADSIESVWEFIEKIAEERDSLPYEIDGIVIKVNDLAVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  +      PS CP C
Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EIPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 DSELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  A I+ L          +  +  F + S   LY +I   +  S ER +F L
Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + +      +Q               +  +  +G +IAQ++  +++
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSIGTVIAQSLHTYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +  L +          +    + +    +V TG LQK+ R++A+E +  LGA 
Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 612 VSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|319744895|gb|EFV97229.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae ATCC 13813]
          Length = 652

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 219/701 (31%), Positives = 360/701 (51%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
              ++ L   ++ +   YY    P + DS+YD L R    +    P+      PN P ++
Sbjct: 2   ENRMNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENIL---PNSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRVK-----AEFPTASYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++ Y  G     A RGDG+ GE+++  ++ +  IP  L L+    I VRGE Y+ K  
Sbjct: 114 SVSLTYVNGILQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKES 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N E  A G + +ANPRNAA+G LR+LN   +            + S    + Q ++
Sbjct: 172 FEAINIEKRANGEQEFANPRNAAAGTLRQLNTGIV-AKRKLATFLYQEASPTQKETQDDV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+++   GF VN+    +++   I  +   ++  R +LPYDIDG+V KV+  ++Q++LG 
Sbjct: 231 LKELESYGFSVNHHRLISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+++++++R+        P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V   +        A RC   L C  Q  ERL HF SRDA NI G G   ++  F  
Sbjct: 399 GSELVHFEDE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD- 450

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  I   ADI+ L      +      + G  + S T +Y +I   +  S E+ +F L
Sbjct: 451 ---AHLIADVADIYRLSIEDLLT------LDGIKEKSATKIYHAIQSSKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + + + +  +Q              S+  +  +G +IA+++  F++
Sbjct: 502 GIRHVGSKASRLLLEEFGNLRQLSQASQ----------ESIASIDGLGGVIAKSLHTFFE 551

Query: 618 NPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  +E L    V+ +      +  +++    +V TG L+K+ R++A+E +  LGA 
Sbjct: 552 KEEVDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+I+ G + GSKL KAQ LG+ I +E+  L L
Sbjct: 612 VTGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 652


>gi|314966144|gb|EFT10243.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL082PA2]
          Length = 740

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 209/743 (28%), Positives = 339/743 (45%), Gaps = 74/743 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P  +
Sbjct: 21  RHHWTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPTQR 77

Query: 78  IGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G          V H    LSL+ ++  ++L ++I+R+     K  +    F  E KIDG
Sbjct: 78  VGAPQRVTDFAPVKHLERLLSLDNVFTRDELSEWISRVATAVGKIPN----FLCELKIDG 133

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVYISK 195
             + + Y  G+ V  A RGDG  GEDV+A +R I  IP+ L+ +     +EVRGEV+   
Sbjct: 134 LAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVFFPV 193

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF  LN  ++  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G         Q
Sbjct: 194 ADFTDLNAALVEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFPSQ 253

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
                K+   G PV+   +       +  +       R    + IDG+V KVD+ SLQ++
Sbjct: 254 GHAYDKLAQWGLPVSPYFKIVEHADEVQEFVTRWGESRGEASHQIDGVVVKVDDVSLQRK 313

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  ATLH
Sbjct: 314 LGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVAVAGSTVEMATLH 373

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P  C
Sbjct: 374 NAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMPDHC 422

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +  + N          RC     C +Q  ER+    SR A +IE LG +     
Sbjct: 423 PSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAAIAL 477

Query: 495 FKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIENIL 528
              E+                       A    +  D        +RR+         + 
Sbjct: 478 TDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQPDDLAEVKVWRRRKVNGGPGPWQLE 537

Query: 529 GFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
            +                   ++D + K ++  L R + +L IRHVG   AR+LA ++ S
Sbjct: 538 PYFFTKATAKKPSAPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATHFGS 597

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
            +   +               L  V  VG+IIA+++  +++   +   +           
Sbjct: 598 VEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGVRMA 647

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N GS
Sbjct: 648 DDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGENAGS 707

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQ 719
           K  KA+ LG  I++E  F +LL+
Sbjct: 708 KETKARDLGRPILDEAGFRYLLE 730


>gi|226357440|ref|YP_002787179.1| NAD-dependent DNA ligase [Deinococcus deserti VCD115]
 gi|254778147|sp|C1D1Y6|DNLJ1_DEIDV RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|226319430|gb|ACO47425.1| putative NAD-dependent DNA ligase [Deinococcus deserti VCD115]
          Length = 686

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 231/712 (32%), Positives = 354/712 (49%), Gaps = 43/712 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            +  + L Q+++ H+  YY+   P I D EYDAL R    +    P+ A    P  P   
Sbjct: 8   AERHAWLTQKVAEHNRRYYEEDAPTIPDFEYDALVRELRELEARHPEFAA---PTSPAQT 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-SIFFTLEPKIDG 136
           +GG  +    KV H  P  SL+  ++  +L  F  ++ R       + +  +T E KIDG
Sbjct: 65  VGGRPSTLFEKVRHPTPMTSLDNAFSDAELAHFDDKVARALNLPPGSRTFTYTCELKIDG 124

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I + Y  G   +AA RGDG  GE V+A I  IP IP  L     E+ EVRGEVY+SK 
Sbjct: 125 LSINLYYVDGILQWAATRGDGEVGEKVTANIEGIPGIPTQLPGLQGEL-EVRGEVYMSKA 183

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQY 255
            FLA N +    GR    NPRN A+G LR+ +P +  R  L   ++ LGK   +  + Q+
Sbjct: 184 TFLAYNLKAEEEGRPLLKNPRNGAAGALRQKDPAETRRRGLEVILYALGKRDGVPVRTQW 243

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++L+ +R  GF  +   R+        +Y+ EM + R  LP+D DG V K+D+  LQ+  
Sbjct: 244 DILEWLRAQGFATSEYARRVTGSEAAAAYHAEMTAQRPQLPFDADGSVVKLDDLRLQEDA 303

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+P+W +++KF    A T +  I IQ GRTG LTPVA L PV + G  +  ATLHN
Sbjct: 304 GYTSRAPKWAVAYKFPADVAQTVIEAITIQTGRTGKLTPVAELRPVLLEGTTVARATLHN 363

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED+I+GL           D+ VGD V V ++G +IP+V+ +++ +R   + P++FP+ CP
Sbjct: 364 EDFIRGL-----------DLHVGDTVRVHKSGGIIPEVLGVVLEQRPEGSTPYAFPTHCP 412

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C    VR          AA       AC A+   R+++F SRD  +I+GLG++ ++   
Sbjct: 413 VCGHEAVRHEG-------AAGTFCTNPACPAKSTLRVRYFASRDVMDIKGLGERLVEQLV 465

Query: 496 KSEDPAFSIRIPADIFTLQRRQ----QTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                A  +R PAD++ L   Q    +   T    +   G  +   L   I   +   L 
Sbjct: 466 D----AGLVRDPADLYALTAEQIEHLEMGETTTGGVRRVGRKNAEKLVAEIEASKTRELW 521

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R   SLG+ +VG   A  +A+ Y S ++  Q               L R+P VG  +A+ 
Sbjct: 522 RVFRSLGLPYVGEGTATRIARVYRSLEDIRQA----------SVDDLARIPDVGRQVAEG 571

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           IV+  ++      ++ L           +  V  ++     V TGTL  + R   + ++ 
Sbjct: 572 IVQGLRDADMCAYLDRLTAAGVQPTPSVDVRVGEQLAGLTFVVTGTLS-VPRDVIKLHLG 630

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           Q GA VS  +++KT  +I G++ GSKLEKA +L V +++E     LL +   
Sbjct: 631 QYGARVSGSVTKKTSYLIAGEDAGSKLEKATELKVPVLDEAGLQKLLAEKGA 682


>gi|289168011|ref|YP_003446280.1| DNA ligase [Streptococcus mitis B6]
 gi|288907578|emb|CBJ22415.1| DNA ligase [Streptococcus mitis B6]
          Length = 652

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 212/700 (30%), Positives = 356/700 (50%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEVTHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V  A RGDG  GE+++  ++ +  IP +L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLILPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q ++L
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN           I  +  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 KHLEQLGFVVNPKRILTENIDEIWDFIQEIGQKRENLPYDIDGVVIKVNDLAGQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCD 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSVVEKLFS-- 450

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  A+I+ LQ            + G  + S + LY +I   +  S E+ +F LG
Sbjct: 451 --ANLVKDVANIYRLQEEDF------LLLEGVKEKSASKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +++ S +N AQ           D   +  +  +G +IA+++  ++  
Sbjct: 503 IRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   +  L +       +       + +    +V TG L++++R +A+  +  LGA V
Sbjct: 553 EGSEILLRELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652


>gi|25010923|ref|NP_735318.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae NEM316]
 gi|81457056|sp|Q8E5W1|DNLJ_STRA3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|23095302|emb|CAD46512.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 652

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 219/701 (31%), Positives = 360/701 (51%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
              ++ L   ++ +   YY    P + DS+YD L R    +    P+      PN P ++
Sbjct: 2   ENRMNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENIL---PNSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRVK-----AEFPTASYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++ Y  G     A RGDG+ GE+++  ++ +  IP  L L+    I VRGE Y+ K  
Sbjct: 114 SVSLTYVNGILQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKES 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N E  A G + +ANPRNAA+G LR+LN   +            + S    + Q ++
Sbjct: 172 FEAINIEKRANGEQEFANPRNAAAGTLRQLNTGIV-AKRKLATFLYQEASPTQKETQDDV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+++   GF VN+    +++   I  +   ++  R +LPYDIDG+V KV+  ++Q++LG 
Sbjct: 231 LKELESYGFSVNHHRLISSSMEKIWDFIQTIEKDRISLPYDIDGIVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+++++++R+        P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V   +        A RC   L C  Q  ERL HF SRDA NI G G   ++  F  
Sbjct: 399 GSELVHFEDE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD- 450

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  I   ADI+ L      +      + G  + S T +Y +I   +  S E+ +F L
Sbjct: 451 ---AHLIADVADIYRLSIEDLLT------LDGIKEKSATKIYHAIQSSKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + + + +  +Q              S+  +  +G +IA+++  F++
Sbjct: 502 GIRHVGSKASRLLLEEFGNLRQLSQASQ----------ESIASIDGLGGVIAKSLHTFFE 551

Query: 618 NPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  +E L    V+ +      +  +++    +V TG L+K+ R++A+E +  LGA 
Sbjct: 552 KEEVDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+I+ G + GSKL KAQ LG+ I +E+  L L
Sbjct: 612 VTGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 652


>gi|251809892|ref|ZP_04824365.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874546|ref|ZP_06283431.1| DNA ligase (NAD(+)) [Staphylococcus epidermidis SK135]
 gi|293367782|ref|ZP_06614431.1| DNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|251806557|gb|EES59214.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296685|gb|EFA89194.1| DNA ligase (NAD(+)) [Staphylococcus epidermidis SK135]
 gi|291318121|gb|EFE58518.1| DNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329734727|gb|EGG71033.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU045]
 gi|329734798|gb|EGG71103.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU028]
          Length = 665

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 242/708 (34%), Positives = 378/708 (53%), Gaps = 53/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +K +  L   ++ +   YY    P + DSEYD L      I   +P+       + 
Sbjct: 1   MQDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFK---STDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDLRKF  RI     K     + +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRDSIGK-----VEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  +   +    EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--FEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   +E  A 
Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L+++  LGF  N    + +   G+++Y  +  S R +L YDIDG+V KV++ S Q
Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRGSLSYDIDGIVIKVNDLSQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V++K+AG++IP+VV  I++ R  +++ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++++     I+  ADIF L+            +   G   V NL  +I K +  SLE 
Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDL------LPLERMGKKKVDNLLLAIEKSKEQSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +     +   +           LI +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SE-IENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +E L  +      +  K            K +V TG L+++ R++A E
Sbjct: 553 VTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIEGHPDFSGKTIVLTGKLEQMTRNEASE 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++   GA V+  +++ TDI+I G + GSKL KA++ G +I  E  F+ 
Sbjct: 613 WLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFIE 660


>gi|284992468|ref|YP_003411022.1| DNA ligase, NAD-dependent [Geodermatophilus obscurus DSM 43160]
 gi|284065713|gb|ADB76651.1| DNA ligase, NAD-dependent [Geodermatophilus obscurus DSM 43160]
          Length = 716

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 217/715 (30%), Positives = 361/715 (50%), Gaps = 41/715 (5%)

Query: 10  EALSI--EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           E L+   + AR     L +E+  +   YY    P++ D +YD L     +I  A P L  
Sbjct: 19  EDLTEVPDDARTRHRDLSEELDRYAFAYYVQDAPLVSDGQYDELMGELKSIEAAHPALV- 77

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  K+ G    +   V H     SL+  ++ ++L  +  R+ R           
Sbjct: 78  --TPDSPSQKVNGGFAATFAPVKHLERMQSLDNAFSSDELSAWAARVEREVGSAAV---- 131

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186
           +  E K+DG  + + YE+G+ + AA RGDG +GEDV+A +R +  +P+ LS +  P ++E
Sbjct: 132 YLCELKVDGVAVDLVYERGRLLRAATRGDGVTGEDVTANVRTMDDVPQQLSGDDVPPLLE 191

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGE+Y     F  +N   +A G+ P+ANPRNAA+G LR+ +     +R L   VHGLG 
Sbjct: 192 VRGEIYFPVEAFAEVNAGQVADGKPPFANPRNAAAGSLRQKDARVTASRPLRLVVHGLGA 251

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 + Q E   ++R LG PV++ V   +   G+ +Y    +  R ++ ++IDG+V K
Sbjct: 252 REGFSPERQSEAYARLRELGLPVSDRVEVLDDLEGVWAYIERYREQRHSVEHEIDGVVVK 311

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ +LQ++LG  +R+PRW I+ K+  ++A+T+LLDI + +GRTG +TP A +EPV + G
Sbjct: 312 VDQVALQRRLGSTSRAPRWAIAFKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVKVAG 371

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +  ATLHN   +K            + + +GD V++++AG+VIP+V+  +V  R  D 
Sbjct: 372 STVQLATLHNASEVKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVAARTGDE 420

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           + F  P+ CP C + +  +      +  A  RC    +C AQ  ER+ H   R AF+IE 
Sbjct: 421 REFEMPTHCPECGTELRHE-----KEGDADIRCPNARSCPAQLRERVFHVAGRGAFDIEN 475

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +      +       I    D+F+L   +   T       G    +   L  ++  R
Sbjct: 476 LGYEAGIALLQE----HLIEDEGDVFSLDEEKLERTAFFTKKDGALSANGRKLLTNLQTR 531

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +++ L R + +L IRHVG   A++LA+ + S    A+     +A              VG
Sbjct: 532 KDVPLWRVLVALSIRHVGPTAAQALARDFRSLDRIAEASEEELAAA----------DGVG 581

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             IA+++ E++    +   VE             E      +    +V TG+L+   R +
Sbjct: 582 PTIARSVKEWFAVDWHRGVVEKWRAAGVRMADEGEDAGPGPLTGVAVVVTGSLRDHSRDQ 641

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A   + + G  V+  +S+KT  ++VG +PGSK +KA Q+   I++++ F  LL++
Sbjct: 642 AIAAIQERGGKVTGSVSKKTGFVVVGADPGSKYDKAVQVKAPILDDDGFRVLLEE 696


>gi|225155696|ref|ZP_03724184.1| DNA ligase (NAD(+)) [Opitutaceae bacterium TAV2]
 gi|224803490|gb|EEG21725.1| DNA ligase (NAD(+)) [Opitutaceae bacterium TAV2]
          Length = 761

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 236/784 (30%), Positives = 365/784 (46%), Gaps = 116/784 (14%)

Query: 12  LSIEQAR--KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           ++  +    + +++L  E++ HD+ YY+ ++P I D +YD LKR    +    P L   +
Sbjct: 1   MTPAEPTPVQRIANLRAELARHDELYYRAARPEISDYDYDRLKRELANLESQHPQL---D 57

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD------- 122
             + P  +IG +      +V H    L+L+  ++  +LR+F  R+ +   K++       
Sbjct: 58  LGDSPTLRIGDDRVEGFTRVRHRQAMLTLDNTYDEGELREFHVRVVKALSKENPPPPPPP 117

Query: 123 ----------------------------------DNSIFFTLEPKIDGTMITIRYEKGKF 148
                                             D +I + +EPKIDG  I++ YE GK 
Sbjct: 118 PPSPTTTATKPTEQLDLFAPVPSPPPPPLPPATFDANIAYIVEPKIDGVSISLTYEHGKL 177

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI------PEIIEVRGEVYISKNDFLALN 202
             A  RGDG  G+DV+A ++ I  +P  L          P +IE+RGE+++ + +F  +N
Sbjct: 178 TQAITRGDGTEGDDVTANVKTIHGLPHTLCHAPGTTTPLPALIEIRGEIFLREEEFRRIN 237

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF----------- 250
            +    G  PYANPRN A+G L++L+PT   +R L   ++GLG                 
Sbjct: 238 QQQEEAGDAPYANPRNLAAGTLKQLDPTLVASRRLEIVLYGLGACEPAVPPPPPSAPTDA 297

Query: 251 --AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q    +++   G P    +        + +   E+  +R T  Y  DG V K+D 
Sbjct: 298 LGFDSQTTYQRQLIAWGLPTVEKIWSVRGIDAVWTAIQELDRLRRTFAYATDGAVVKLDL 357

Query: 309 FSLQKQLGERARS------------PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           F+ QK LG R               PRW  + KF   +A TRL  I IQ+GRTG+LTPVA
Sbjct: 358 FAQQKILGYRGADATGRAQEARKLSPRWACAFKFPPDRAKTRLRAITIQVGRTGVLTPVA 417

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            L+PV + G+ +  ATLHN D I             +D+R+ D VL+++AGE+IP V+++
Sbjct: 418 ELDPVLLAGSTVRRATLHNADEIAR-----------KDVRINDTVLIEKAGEIIPAVINV 466

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           IV +R PD+ P++FP  CP C +  VR           A RC     C  +   R+ HFV
Sbjct: 467 IVEKRPPDSIPYAFPQNCPACNTPAVRIEGE------VAWRCLNP-HCPGKMRRRIAHFV 519

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           S+   +IEGLG++ ++           I+   D+F L R Q         +   G+    
Sbjct: 520 SKACLDIEGLGREIVELLLDHN----LIKTIPDLFRLTREQL------LPLKKSGETWSG 569

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL ++I  RR   L R I  LGI  VGA  A++LA+ + S    A               
Sbjct: 570 NLINAIAARRTADLWRVIHGLGIPQVGAAAAKNLARAFRSLDALAAAT----------LP 619

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            L R+P  G   AQA+ +++ +P N   +  L +             +  +  K +V TG
Sbjct: 620 DLERLPDFGATTAQAVRDWFADPHNQELIADLQRAGLAPTPPAAAATNHPLAGKTIVLTG 679

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  + R +A E +   G  +S  +S+KT  ++ G   GSKLEKAQ+LGV I++E  FL 
Sbjct: 680 TLPTLTREQATEKIEAAGGKISTSVSKKTHYVLAGAEAGSKLEKAQKLGVPILDEAAFLQ 739

Query: 717 LLQQ 720
           LL  
Sbjct: 740 LLDD 743


>gi|323126984|gb|ADX24281.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 652

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 217/701 (30%), Positives = 353/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L + ++ +   YY    P + DSEYD L R    + + +P+       + P   
Sbjct: 2   KKRIRELTELLNRYRQEYYTNDSPSVSDSEYDKLYRELVDLENQYPEHVLQ---DSPTQN 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +     +  E KIDG 
Sbjct: 59  VGGTLLTGFDKYQHQYPLFSLQDAFSREELDAFDKRVK-----SEFPDATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G+    A RGDG  GE+++  ++ I  IP    L  P  I VRGE Y+S+  
Sbjct: 114 SISLSYENGQLQVGATRGDGSVGENITENLKQIKDIP--QVLPQPLTITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N+E    G   +ANPRNAA+G LR+L+   +            + S      Q  +
Sbjct: 172 FKAINEERQENGETEFANPRNAAAGTLRQLDTAVV-AKRQLATFLYQEASPTTRSQQDHV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     +++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LKALADLGFSVNQRHHLSSSMDEIWDFIQTVEAERDQLAYDIDGIVIKVNNLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L+PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLKPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++ ++R      +  PS CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVSDKRQEQVPMWI-PSQCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           QS +V   +        A RC   L C +     L+HF SR+A NI GLG   ++  F  
Sbjct: 399 QSDLVHFEDE------VALRCINPL-CPSLIQRGLEHFASRNAMNIAGLGPAVVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L +          ++ G  + S   L  +I   ++ S E+ +F L
Sbjct: 450 --LAGLVHDVADIYKLTKEDL------LHLDGIKEKSAEKLLAAIETSKSNSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRH+GA+ +R + +     ++                  +  +  +G +IA+++V+++Q
Sbjct: 502 GIRHIGAKASRLILETCGDIEHLLTVRE----------EDIATIDGLGMVIAKSLVQYFQ 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
               I  VE L            + + ++E+    +V TG L+K+ R+ A+  +  LGA 
Sbjct: 552 QDSAILLVEELKNAGVNLAYLGQKIDSNAELFGLTVVLTGKLEKMTRNDAKAKLETLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD++I G + GSKLEKAQ LG++I  EE    L
Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAQALGIRIEGEEWLEQL 652


>gi|307706499|ref|ZP_07643306.1| DNA ligase, NAD-dependent [Streptococcus mitis SK321]
 gi|307617954|gb|EFN97114.1| DNA ligase, NAD-dependent [Streptococcus mitis SK321]
          Length = 652

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 213/700 (30%), Positives = 357/700 (51%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEVAHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q ++L
Sbjct: 173 DQVNQARQENGESEFANPRNAAAGTLRQLDTAVV-ATRNLATFLYQEASPSTRDSQEKVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 KHLEQLGFVVNPKRILAENIDEIWNFIQEVGEERENLPYDIDGVVIKVNDLASQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    PS CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRLSEEKL-DIPSHCPSCD 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC     C AQ +E L HF SRD  NI GLG   ++  F   
Sbjct: 400 SHLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDTMNITGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ L+            + G  + S + LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLKEEDF------LLLEGVKEKSASKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +++ S +N AQ           D   +  +  +G +IA+++  ++  
Sbjct: 503 IRHVGSKASQLLLQHFHSIENLAQA----------DSDEVASIESLGSVIAKSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   ++ L +       +       + +    +V TG L++++R +A+  +  LGA V
Sbjct: 553 EGSEILLKELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKNKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652


>gi|242241743|ref|ZP_04796188.1| DNA ligase [Staphylococcus epidermidis W23144]
 gi|242234833|gb|EES37144.1| DNA ligase [Staphylococcus epidermidis W23144]
          Length = 665

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 241/708 (34%), Positives = 377/708 (53%), Gaps = 53/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +K +  L   ++ +   YY    P + DSEYD L      I   +P+       + 
Sbjct: 1   MQDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFK---STDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDLRKF  RI           + +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRDSIG-----QVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  +   +    EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--FEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   +E  A 
Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L+++  LGF  N    + +   G+++Y  +  S R +L YDIDG+V KV++ S Q
Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRESLSYDIDGIVIKVNDLSQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V++K+AG++IP+VV  I++ R  +++ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++++     I+  ADIF L+            +   G   V NL  +I K +  SLE 
Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDL------LPLERMGKKKVDNLLLAIEKSKERSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +     +   +           LI +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SE-IENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +E L  +      +  K            K +V TG L+++ R++A E
Sbjct: 553 VTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIDGHPDFSGKTIVLTGKLEQMTRNEASE 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++   GA V+  +++ TDI+I G + GSKL KA++ G +I  E  F+ 
Sbjct: 613 WLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFIE 660


>gi|76787534|ref|YP_329595.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae A909]
 gi|123771969|sp|Q3K1K8|DNLJ_STRA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76562591|gb|ABA45175.1| DNA ligase, NAD-dependent [Streptococcus agalactiae A909]
          Length = 652

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 220/701 (31%), Positives = 360/701 (51%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
              ++ L   ++ +   YY    P + DS+YD L R    +    P+      PN P ++
Sbjct: 2   ENRMNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEKQHPENIL---PNSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRVK-----AEFPTAAYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++ Y  G     A RGDG+ GE+++  ++ +  IP  L L+    I VRGE Y+ K  
Sbjct: 114 SVSLTYVNGVLQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKES 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N E  A G + +ANPRNAA+G LR+LN   +            + S    + Q ++
Sbjct: 172 FEAINIEKRANGEQEFANPRNAAAGTLRQLNTGIV-AKRKLATFLYQEASPTQKETQDDV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+++   GF VN+    +++   I  +   ++  R +LPYDIDG+V KV+  ++Q++LG 
Sbjct: 231 LKELESYGFSVNHHRLISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+++++++R+        P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V            A RC   L C  Q  ERL HF SRDA NI G G   ++  F  
Sbjct: 399 GSELVHFEGE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD- 450

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  I   ADI+ L      S   +  + G  + S T +Y +I   +  S E+ +F L
Sbjct: 451 ---AHLIADVADIYRL------SIENLLTLDGIKEKSATKIYHAIQSSKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + + + +  +Q              S+  +  +G +IA+++  F++
Sbjct: 502 GIRHVGSKASRLLLEEFGNLRQLSQASQ----------ESIASIDGLGGVIAKSLHTFFE 551

Query: 618 NPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  +E L    V+ +      +  +++    +V TG L+K+ R++A+E +  LGA 
Sbjct: 552 KEEVDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+I+ G + GSKL KAQ LG+ I +E+  L L
Sbjct: 612 VTGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 652


>gi|303239321|ref|ZP_07325849.1| DNA ligase, NAD-dependent [Acetivibrio cellulolyticus CD2]
 gi|302593107|gb|EFL62827.1| DNA ligase, NAD-dependent [Acetivibrio cellulolyticus CD2]
          Length = 663

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 221/706 (31%), Positives = 349/706 (49%), Gaps = 46/706 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +K +  L + I YH+D YY      I D EYD L      +    P+LA +   N P 
Sbjct: 2   DIKKRIEELRKTIEYHNDRYYNQDDAEISDYEYDQLSLELRKLEQEHPELALT---NSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+GG     L KV H +P +SL+ +++ E++  F+ ++ +           F +E KID
Sbjct: 59  QKVGGTAKRELRKVQHDVPVISLQDVFSKEEVYSFVNKMIQELG-----DPTFVVERKID 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + +RY  G  V    RGDG  GE V   +  I +IPR +   +P + EVRGEVY+S 
Sbjct: 114 GLSVVLRYNDGNLVEGITRGDGLVGESVYENLLEIQSIPRTIPTKLPYL-EVRGEVYMSA 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254
             F   N +    G K Y   RN A+G LR+L+P     R L+ +V  L           
Sbjct: 173 EAFEKANRKQEETGGKIYQTARNLAAGSLRQLDPGIVRERNLDIYVFNLEICQGKDFSSH 232

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +   GFP++       T   +    +++   R  L + IDG V KVD    +K+
Sbjct: 233 SESLNWLSTQGFPISPEFMICKTADEVWECISKIGETRWQLSFGIDGAVVKVDSLDDRKR 292

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++ PRW ++ K+  +Q  T + DI +Q+GRTG LTP+A L+PV I G  ++ ATLH
Sbjct: 293 LGITSKVPRWAVAFKYPPEQKETVVEDIKVQVGRTGRLTPLAILKPVKIAGTTVSRATLH 352

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N+DYI             +DI++GD V++++AG++IP+V+  I  +R   A+ +  P  C
Sbjct: 353 NQDYIDS-----------KDIQIGDTVIIQKAGDIIPEVLKSIPEKRPDTAKRYIIPDKC 401

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C +  +R+ +    +         G AC AQ +  + +F S+DA NIEG G   ++  
Sbjct: 402 PMCGAPALREEDGVEIR-------CTGSACFAQAIRGVIYFASKDAMNIEGFGPSSVEAL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    I+  ADI+ L+  +    TK        + S+ NL  +I K ++  ++R I
Sbjct: 455 MSE----GYIKDVADIYLLKDSRDELITKGI---VGKEKSIDNLLKAIEKSKDNDIDRLI 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
              GIR+VG + AR LA  +   ++               +  LI +P  GDI+ + I+E
Sbjct: 508 TGFGIRNVGKQTARVLAANFQDIESLENAT----------YDQLIVLPDFGDIMVKDILE 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+    N+  +  L +     + +   N        K  V TGTL  + R +A E +   
Sbjct: 558 FFSKSENLLLISKLKQVGINMLSKASVNKKDDRFSGKTFVLTGTLPSMTREEATELIQMH 617

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G  VS  +S++T  ++ G++ GSKL KAQ+LGV+++ EE+   +L 
Sbjct: 618 GGKVSGSVSKRTSYVLAGEDAGSKLAKAQELGVQVIGEEELKNMLN 663


>gi|227432449|ref|ZP_03914436.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351770|gb|EEJ42009.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 680

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 238/717 (33%), Positives = 376/717 (52%), Gaps = 51/717 (7%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
               PIE L+ + A++E + L++++  +   YY+   P++ D  YDAL  R  A+   FP
Sbjct: 3   PDFTPIEKLTTQDAQQETARLQKQLVQYGTAYYEDDAPLVEDYIYDALYARLVALEEKFP 62

Query: 64  DLARSEDPNGPLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
                  P+ P   +G  +    L KV H  P LSL  ++++++L  +  R  +      
Sbjct: 63  QYVI---PDSPTQNVGSADTKSELQKVVHPAPMLSLGDVFSLDELNDWDARTTKSLG--- 116

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
            N   + LE KIDG  + + Y  G+ V A+ RG+G  GEDV+A ++ I  IP+ L+  + 
Sbjct: 117 -NQAPYNLELKIDGLAVALTYVNGQLVQASTRGNGIVGEDVTANVKTIKAIPKKLTEPL- 174

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
             IEVRGE+Y+ K  F ALN +  A G +P+ANPRNAA+G LR+LN     +R L  FV+
Sbjct: 175 -TIEVRGEIYMPKASFAALNKQREADGLEPFANPRNAAAGSLRQLNVKITKSRNLAAFVY 233

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
              +   +    Q   L++   LG P +   R  N    I  Y +E  S R +L Y IDG
Sbjct: 234 YTAEPEMLGVTTQSGALERFAELGLPTDTHNRVINKMTDIAGYIDEYTSERESLSYGIDG 293

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KV++  LQ  LG   + PRW I++KF  ++A T + DI+  +GRTG +TP A ++PV
Sbjct: 294 VVVKVNQLDLQFDLGNTVKIPRWAIAYKFPPEEALTTVRDIEWTVGRTGAVTPTAVMDPV 353

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  +  A+LHN DY++            +DI++GD V + +AG++IP++  +I+ +R
Sbjct: 354 LLAGTTVQRASLHNPDYLR-----------EKDIQIGDTVTLHKAGDIIPEIGQVILEKR 402

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             D++ +  P+ CP C+S +V            A RC     CSAQ  E L HF SR+A 
Sbjct: 403 PTDSETYQVPTICPACESNLVHIEGE------VALRCINPF-CSAQIQEGLTHFASRNAM 455

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI+G+G + +    K    A  I+  A I+ +   Q  +      +  F + S   L D+
Sbjct: 456 NIDGMGPRVVGQLLK----AGYIKDVASIYRITVEQLLT------LDKFQEKSAVKLIDA 505

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           IN  +  SLER +F LGIR VGA+ AR +A+ + +    ++               +  +
Sbjct: 506 INSSKENSLERLLFGLGIRMVGAKAARLIAEKFRTLSAVSEA----------SVEDIANI 555

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQ 659
             +G  IAQ+IV+++  P +   +  L         +     + +S    KK+V TG L+
Sbjct: 556 NGIGHTIAQSIVQYFSTPESKQLLVELASSGVNQSYLSDTVIDENSFFYGKKVVLTGKLE 615

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +  R  A +++   GA V+  +S KTD++I G+  GSKL+KA QLGV +  E+QF+ 
Sbjct: 616 QSSRPAATKWLQDHGANVAGSVSVKTDLVIAGEAAGSKLDKASQLGVTVWTEQQFVD 672


>gi|22537014|ref|NP_687865.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae 2603V/R]
 gi|81454504|sp|Q8E084|DNLJ_STRA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|22533870|gb|AAM99737.1|AE014230_17 DNA ligase, NAD-dependent [Streptococcus agalactiae 2603V/R]
          Length = 652

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 220/701 (31%), Positives = 360/701 (51%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
              ++ L   ++ +   YY    P + DS+YD L R    +    P+      PN P ++
Sbjct: 2   ENRMNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEKQHPENIL---PNSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG 
Sbjct: 59  VGGLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRVK-----AEFPTAAYMAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++ Y  G     A RGDG+ GE+++  ++ +  IP  L L+    I VRGE Y+ K  
Sbjct: 114 SVSLTYVNGVLQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKES 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N E  A G + +ANPRNAA+G LR+LN   +            + S    + Q ++
Sbjct: 172 FEAINIEKRANGEQEFANPRNAAAGTLRQLNTGIV-AKRKLATFLYQEASPTQKETQDDV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+++   GF VN+    +++   I  +   ++  R +LPYDIDG+V KV+  ++Q++LG 
Sbjct: 231 LKELESYGFSVNHHRLISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSIAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+++++++R+        P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V            A RC   L C  Q  ERL HF SRDA NI G G   ++  F  
Sbjct: 399 GSELVHFEGE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD- 450

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  I   ADI+ L      S   +  + G  + S T +Y +I   +  S E+ +F L
Sbjct: 451 ---AHLIADVADIYRL------SIENLLTLDGIKEKSATKIYHAIQSSKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + + + +  +Q              S+  +  +G +IA+++  F++
Sbjct: 502 GIRHVGSKASRLLLEEFGNLRQLSQASQ----------ESIASIDGLGGVIAKSLHTFFE 551

Query: 618 NPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  +E L    V+ +      +  +++    +V TG L+K+ R++A+E +  LGA 
Sbjct: 552 KEEVDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+I+ G + GSKL KAQ LG+ I +E+  L L
Sbjct: 612 VTGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 652


>gi|323697702|ref|ZP_08109614.1| DNA ligase, NAD-dependent [Desulfovibrio sp. ND132]
 gi|323457634|gb|EGB13499.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans ND132]
          Length = 684

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 234/718 (32%), Positives = 380/718 (52%), Gaps = 57/718 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E   + ++ L Q+I +H+  YY    P I D E+D L R   A+    P+L   +DP
Sbjct: 1   MVPESVAERVAELRQKIDHHNYRYYVLDDPEISDQEFDVLFRELAALEAEHPEL---DDP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GGE         H++   SL+   +++    F  R+ +   + D   + +  +
Sbjct: 58  NSPTRRVGGEPASGFTPYEHALRLYSLDNAMDLDAWYAFHERVAKGVGRAD---VAYWAD 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190
           PK+DG  + + YE G++V AA RGDG  GEDV+A +R +  +P  L  +  PE++EVRGE
Sbjct: 115 PKMDGLALEVIYENGRYVRAATRGDGLVGEDVTANMRTVMNLPLSLHGDDVPELLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEI 249
           V ++  DF ALN      G K +ANPRNAA+G +R+L+P         F  +G+G+    
Sbjct: 175 VVMANRDFAALNARQEEKGEKVFANPRNAAAGTIRQLDPKVAASRPLRFMAYGVGRVEWP 234

Query: 250 ----FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                   Q  +++ +R LGF +   V+   +   +  Y+ ++ +IR+TLP++IDG+V K
Sbjct: 235 GRASDWATQQALMEGLRDLGFAIPPDVKLCASAKAVADYFQQLGAIRATLPFEIDGMVAK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++  +Q+ LG  AR+PRW ++ KF   Q  TRL  I +Q+GRTG+LTPVA LEPV + G
Sbjct: 295 VNDREMQEALGYTARAPRWALALKFPAHQTRTRLNAIRVQVGRTGVLTPVAELEPVELAG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++NATLHN+ YI             RD+RVGD VL++RAG+VIP+V+   + +R  +A
Sbjct: 355 VVVSNATLHNKGYI-----------AERDLRVGDTVLIQRAGDVIPQVLSADLEQRPENA 403

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +PF FP  CP+C+S           +      CT   AC A+ ++RL HFVS+   ++EG
Sbjct: 404 EPFVFPMVCPVCESPA--------VEDGERVVCTNP-ACPAKTVQRLIHFVSKAGMDMEG 454

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +GKQ +    +       +   AD+FTL++             G GD S  N   +I K 
Sbjct: 455 VGKQWVRKLAED----GVLNSAADLFTLKKTDLLKYG------GMGDKSAENFLKAIEKA 504

Query: 546 RNISL-ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           +  +   R +  LGIRH+G + AR+LA  + +                     L  +  +
Sbjct: 505 KAEAPLWRLVAGLGIRHIGEQAARTLAARFKNLDELFGAT----------LDDLTGLDGI 554

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKI 661
           GD++A+++++F  +  N   ++   +      G     E +    +  K  +FTGTL  I
Sbjct: 555 GDVMAESVLDFRVDAANREMIDRFRELGVWPEGGAPAEEPSDELPLAGKVFIFTGTLP-I 613

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R +A   V   G +    +S+K D ++ G+  GSK+ KA++LG+++++ + F  LL+
Sbjct: 614 SRDEAWAMVEARGGIPVKSISKKVDYVVAGEKAGSKIAKAEKLGLEVIDFDAFKALLE 671


>gi|114565926|ref|YP_753080.1| DNA ligase (NAD(+)) [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318951|sp|Q0AZZ5|DNLJ_SYNWW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|114336861|gb|ABI67709.1| DNA ligase (NAD(+)) [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 661

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 225/715 (31%), Positives = 362/715 (50%), Gaps = 70/715 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +    +  L +E+  HD  YY    P+I DS YD L +    +   +P    +   + P 
Sbjct: 2   EVSSRIKELREEMQKHDYHYYILDAPLISDSGYDRLMQELKKLEEEYPQYITA---DSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++ G+ +     V H  P LSL+  ++ +DL +F  RI R  +     ++ +  E KID
Sbjct: 59  QRVAGKASEKFSPVRHRFPLLSLDNAFSYQDLLEFDRRIGRVAR-----TLSYMAELKID 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + YE G  + AA RGDG  GEDV+A IR I TIP  L  +    +EVRGEV++ K
Sbjct: 114 GVSIALVYENGVLLNAATRGDGLVGEDVTANIRTIKTIPLRLR-HSLPRLEVRGEVFMPK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            +F+ LN+E    G + +ANPRNAA+G LR+L+P     R L+ FV+ +          Q
Sbjct: 173 QEFIRLNEEKEEKGERVFANPRNAAAGSLRQLDPRVTAGRALSAFVYDIIYMEGQTLAEQ 232

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E    M+ LG PVN  VR     + ++++  E    R  LPY+IDG+V K++  + +++
Sbjct: 233 QEAWHFMQELGLPVNPEVRFCADINAVLAFTEEYAEKRHELPYEIDGVVVKLNTLAEREE 292

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ARSPRW +++KF  ++  TRLL ++I +GRTGI+ P A LEPV + G  ++ A++H
Sbjct: 293 LGATARSPRWAMAYKFPAEEKETRLLGVEINVGRTGIIAPTALLEPVFLAGTTVSRASMH 352

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D IK            +D+R+GD VL+ +AG++IP+++  +  +R  + +  + P  C
Sbjct: 353 NFDLIK-----------EKDLRIGDMVLLHKAGDIIPEIIASLPEKRSGEERVITPPENC 401

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S+V R       +          + C A+  E L  F SR A +I+GLG   ++  
Sbjct: 402 PACDSKVARFAGEVAYR-------CENINCPARLKESLIFFASRGAMDIDGLGSAVIEQL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              +     ++   D++ L+  + T+      +   G  S  NL  +IN+ ++  L R +
Sbjct: 455 VNKD----MVKRIDDLYRLREEEITA------LERMGPKSAANLIKAINESKSRPLSRLL 504

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGIRH+GA  A+ L+++     +F +              +L  +P +G  +A+++V 
Sbjct: 505 TALGIRHIGARSAKILSRHIHDIDDFYKL----------GVENLTSIPEIGPKMAESMVN 554

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+  PRN   +E L      +     +     ++ K  V TGTL  + R +A E +   G
Sbjct: 555 FFAEPRNRETIEDLKDLGVNTREEAIEAGEQLLQGKTFVLTGTLPSLTRQQASEMIESRG 614

Query: 675 A-----------VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
                                   ++ GD+PGSKL+KA QL + I++E  FL LL
Sbjct: 615 GKVSSSVSKKTS-----------YVVAGDDPGSKLDKALQLELTILDEAGFLNLL 658


>gi|313896259|ref|ZP_07829812.1| DNA ligase (NAD+) [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975058|gb|EFR40520.1| DNA ligase (NAD+) [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 672

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 219/711 (30%), Positives = 351/711 (49%), Gaps = 44/711 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
            I+  + EL+ L ++I  +   YY  +   I D E+D L  R  AI   +P+L      N
Sbjct: 3   DIQMVKAELAELRRQIRRYSKQYYDDNASDISDYEFDQLMLRLKAIEAEYPELI---TKN 59

Query: 73  GPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P  K+GG     +   V H +P LSL+ +++  ++R F+  I          +  F +E
Sbjct: 60  SPTQKVGGSAQRTAGVLVKHDVPMLSLQDVFSEAEIRDFVAGIR-----AHFPAAEFVVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
            KIDG  + +RYE G    A  RGDG   GEDV+   R I  +   LS       EVRGE
Sbjct: 115 EKIDGLSLALRYENGVLARAVTRGDGIVQGEDVTENARMIADVREQLSDAPVY-FEVRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+ +  F A+N+    +G KP+ANPRN A+G LR+L+      R L+ FV  L +T   
Sbjct: 174 VYMERAAFAAVNERQELLGLKPFANPRNCAAGTLRQLDARVTRERRLSMFVFNLQRTEGR 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                      MR  G  +  G R   T   + +   E+ + R +LPYDIDG V KV++F
Sbjct: 234 TFASHTASYDFMRAQGIKIIAGYRVCRTADEVWAAIEEIGARRGSLPYDIDGAVVKVNDF 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           S + +LG  A++PRW I++K+  ++  T L +I++ +GRTG +TP A  +PV + G  + 
Sbjct: 294 SQRAELGATAKAPRWAIAYKYPPEEKETVLREIELSVGRTGRITPTAVFDPVQLCGTRVE 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+DYI GL           D+R+GD +LV ++GE+IP+V  +++ +R     P+ 
Sbjct: 354 RATLHNQDYIAGL-----------DVRIGDTILVYKSGEIIPRVKAVVLEKRPASTVPYV 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
               CP+C    VR+ +       A  +C   + C AQ    + HFVSR A +I+G G  
Sbjct: 403 IGDTCPVCGEPAVREAD------TADMKCQNPV-CPAQVENHILHFVSRTAMDIKGFGTS 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +         A  +   ADI+TL + +    +         + +V  L D++   +  +
Sbjct: 456 AVIALTH----AGYLHDIADIYTLHQHRDELISSGII---GREKTVDKLLDAVAHSKENT 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            +R +  LGI  +G   A SL + + S    A+           D   ++ VP +G++ A
Sbjct: 509 PDRLLTGLGIAGIGRAAAISLMQEFPSVDALAEA-------ARGDAEKILAVPDMGEVSA 561

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +++ EF+ +      +E         +    +   + +E K  V TGTL  + R +    
Sbjct: 562 RSLAEFFDSEAGRGLLEKFRAAGVNFVSAPRERTGTALEGKSFVITGTLPTLSREECAAL 621

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +T  G  V   +S+KTD ++ G+  GSKL KA+ LGV +++E     ++++
Sbjct: 622 ITAHGGTVKGSVSKKTDYLVAGEAAGSKLAKAEFLGVPVLDEAALRRMIEE 672


>gi|312865342|ref|ZP_07725570.1| DNA ligase (NAD+) [Streptococcus downei F0415]
 gi|311099453|gb|EFQ57669.1| DNA ligase (NAD+) [Streptococcus downei F0415]
          Length = 673

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 207/706 (29%), Positives = 346/706 (49%), Gaps = 51/706 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++      +  L  +++ +   YY    P + D++YD L R    +  A P+L ++   +
Sbjct: 18  NVSAMENRMKELVDQLNRYAKEYYTQDNPSVSDAQYDKLYRELVDLEKAHPELVQA---D 74

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P +++GG +     K TH  P  SL+  ++ E+L  F  R+       +  S  +  E 
Sbjct: 75  SPTHRVGGLVLDGFEKYTHEYPLFSLQDAFSREELDDFDRRVK-----AEFPSASYLAEL 129

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  I++ Y  G+    A RGDG  GE+++  ++ I  IP  L+      I VRGE Y
Sbjct: 130 KIDGLSISLTYVNGQLQIGATRGDGTVGENITENLKRIQDIPLSLAGGQ--TITVRGEAY 187

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           + +  F A+N +    G+  +ANPRNAA+G LR+L+   +            +  E    
Sbjct: 188 LPRASFEAINAKRREEGQDEFANPRNAAAGTLRQLDTAVV-AQRKLATFIYQEAGETDFP 246

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q  +L+    +GF VN      ++   I  +   +++ R  L YDIDG+V KV+  ++Q
Sbjct: 247 TQEAVLEGFADMGFVVNPRRIVTSSMDEIWDFIQAVQADRDNLAYDIDGIVIKVNSLAMQ 306

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG   ++PRW I++KF  ++   +++ +D  +GRTG++TP A L PV + G  ++ AT
Sbjct: 307 EELGFTVKAPRWAIAYKFPAEEKEAKIISVDWTVGRTGVVTPTANLSPVQLAGTTVSRAT 366

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DYI             +DIR+ D V+V +AG++IP V+++++ +R     P   P 
Sbjct: 367 LHNVDYI-----------ADKDIRLDDTVVVYKAGDIIPAVLNVVMAKRQK-QLPMEIPE 414

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C SR+V   +        A RC     C AQ  E+L HF SRDA NI GLG     
Sbjct: 415 TCPSCYSRLVHYEDE------VALRCVNPR-CPAQLKEKLIHFASRDAMNITGLGPS--- 464

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +    A  I+  AD++ L      +      + G  + S   LY +I   +  S E+
Sbjct: 465 -LIEKVYQAGLIQDVADLYQLTVADLLT------LEGVKEKSAAKLYQAIQASKENSAEK 517

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRHVGA+ ++ L + + S                  + ++  +  +G +IAQ++
Sbjct: 518 LLFGLGIRHVGAKASKQLLEKFGSLGQLMSA----------KFEAIADIDGLGAVIAQSL 567

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            +++        +  L +               + +    +V TG L  + R +A+E + 
Sbjct: 568 QDYFATDGAKQLMRELQEAGLNFDYLGKRVTEDAALSGMTVVLTGKLVSLTRSQAKEKLE 627

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            LGA V+  +S+ TD+++ G + GSKL KAQ+LG+ I +E+    L
Sbjct: 628 TLGAKVTGSVSKNTDLVVAGTDAGSKLTKAQELGITIQDEDWLANL 673


>gi|320529157|ref|ZP_08030249.1| DNA ligase, NAD-dependent [Selenomonas artemidis F0399]
 gi|320138787|gb|EFW30677.1| DNA ligase, NAD-dependent [Selenomonas artemidis F0399]
          Length = 672

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 218/711 (30%), Positives = 349/711 (49%), Gaps = 44/711 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
            I+  + EL+ L ++I  +   YY  +   I D E+D L  R  AI   +P+L      N
Sbjct: 3   DIQAVKAELAELRRQIRRYSKQYYDDNASDISDYEFDQLMLRLKAIEAEYPELI---TKN 59

Query: 73  GPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P  K+GG     +   V H +P LSL+ +++  ++R F+  I          +  F +E
Sbjct: 60  SPTQKVGGSAQRTAGVLVKHDVPMLSLQDVFSEAEIRDFVAGIC-----AHFPAAEFVVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
            KIDG  + +RYE G    A  RGDG   GEDV+   R I  +   LS       EVRGE
Sbjct: 115 EKIDGLSLALRYENGVLARAVTRGDGIVQGEDVTENARMIADVREQLSDAPVY-FEVRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+ +  F A+N+    +G KP+ANPRN A+G LR+L+      R L+ FV  L +T   
Sbjct: 174 VYMERAAFAAVNERQELLGLKPFANPRNCAAGTLRQLDARVTRERRLSMFVFNLQRTEGR 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                      MR  G  +  G R   T   + +   E+ + R +LPYDIDG V KV++F
Sbjct: 234 TFASHTASYDFMRAQGIKIIAGYRVCRTADEVWAAIEEIGARRGSLPYDIDGAVVKVNDF 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           S + +LG  A++PRW I++K+  ++  T L +I++ +GRTG +TP A  +PV + G  + 
Sbjct: 294 SQRAELGATAKAPRWAIAYKYPPEEKETVLREIELSVGRTGRITPTAVFDPVQLCGTRVE 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+DYI GL           D+R+GD +LV ++GE+IP+V  +++ +R     P+ 
Sbjct: 354 RATLHNQDYIAGL-----------DVRIGDTILVYKSGEIIPRVKGVVLEKRPASTVPYV 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
               CP+C +  VR+ +       A  +C   + C AQ    + HFVSR A +I+G G  
Sbjct: 403 IGDTCPVCGAPAVREAD------TADMKCQNPV-CPAQVENHILHFVSRTAMDIKGFGTA 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +         A  +   ADI+TL   +              + +V  L D+I   +   
Sbjct: 456 AVIALTH----AGYLHDIADIYTLYEHRDELIASGII---GREKTVDKLLDAIAHSKENP 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            +R +  LGI  +G   A SL + + S    A+           D   ++ VP +G++ A
Sbjct: 509 PDRLLTGLGIAGIGRAAAISLMQEFPSVDALAEA-------ARGDAEKILAVPDMGEVSA 561

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +++ EF+ +  +   +E         +    +   + +E K  V TGTL  + R +    
Sbjct: 562 RSLAEFFGSEASRGLLEKFRAAGVNFVSAPRERTGTALEGKSFVITGTLPTLSREECAAL 621

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +T  G  V   +S+KTD ++ G+  GSKL KA+ L + +++E     ++++
Sbjct: 622 ITAHGGTVKGSVSKKTDYLVAGEAAGSKLAKAESLDIPVLDEAALRRMIEE 672


>gi|307704876|ref|ZP_07641768.1| DNA ligase, NAD-dependent [Streptococcus mitis SK597]
 gi|307621589|gb|EFO00634.1| DNA ligase, NAD-dependent [Streptococcus mitis SK597]
          Length = 652

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 212/700 (30%), Positives = 356/700 (50%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEVAHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q ++L
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A +   I ++  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 KHLEQLGFVVNPKRILAESMDEIWNFIQEVGEERENLPYDIDGVVIKVNDLAGQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRFSEEKL-DIPTNCPSCD 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ L+            + G  + S   LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLKEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +++ S +  AQ           D   +  +  +G +IA+++  ++  
Sbjct: 503 IRHVGSKASQLLLQHFHSIETLAQA----------DPEEVASIESLGGVIAKSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   +  L +       +       + +    +V TG L++++R +A+  +  LGA V
Sbjct: 553 EGSEILLRELREAGVNLAYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEVWLESL 652


>gi|317125504|ref|YP_004099616.1| DNA ligase, NAD-dependent [Intrasporangium calvum DSM 43043]
 gi|315589592|gb|ADU48889.1| DNA ligase, NAD-dependent [Intrasporangium calvum DSM 43043]
          Length = 715

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 218/735 (29%), Positives = 352/735 (47%), Gaps = 56/735 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            IE    ++   E + L +  S     Y+    P I D+EYD L RR +A+   +P L  
Sbjct: 9   AIEDAIPDEVHHEWADLAERASAAQFAYHVKDAPTISDAEYDGLIRRLNALEAQWPSL-- 66

Query: 68  SEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              P+ P  K+G          V H    LSL+  ++ E+LR +  R+ R          
Sbjct: 67  -RTPDSPTQKVGASAFATGFETVDHLERMLSLDNAFSFEELRAWAERVEREVGAGAH--- 122

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEII 185
            F  E KIDG  + + YE+G+ V A  RGDG +GEDV+  +R I  +P  LS +  PE++
Sbjct: 123 -FLTELKIDGLAVNLLYEQGRLVRALTRGDGRTGEDVTNNVRTIEGVPERLSGDDVPELV 181

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           E+RGEV+     F  LN  ++A G+ P+ANPRNAA+G LR+ +P     R L   VHG+G
Sbjct: 182 EIRGEVFFPTAGFADLNAALVAAGKAPFANPRNAAAGSLRQKDPKVTAGRPLRLLVHGIG 241

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                    Q E    +R  G P ++ V+  +    +  +       R    ++IDG+V 
Sbjct: 242 ARRGFDIARQSEGYAALRSWGLPTSDQVKVLDDIADVEEFVTFHGEHRHDGLHEIDGIVV 301

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVDE +LQ+QLG  +R+PRW I+ K+  ++ +TRLLDI + +GRTG +TP   ++PV + 
Sbjct: 302 KVDEVTLQRQLGATSRAPRWAIAFKYPPEEVNTRLLDIRVNVGRTGRVTPYGVMQPVVVA 361

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ +  ATLHN+  ++            + + +GD V++++AG+VIP++V  +V+ R   
Sbjct: 362 GSTVEQATLHNQHEVER-----------KGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGS 410

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +PF  P+ CP C +++  +      +     RC    +C +Q  ER+    SR A +IE
Sbjct: 411 ERPFVMPTQCPSCGTQLAPE-----KEGDKDIRCPNSRSCPSQLRERVFALASRSALDIE 465

Query: 485 GLGKQQLDFFFKSE---DPAFSIRIPADI-----------------FTLQRRQQTSTTKI 524
            LG +      +S    D       P D                     +  ++T     
Sbjct: 466 ALGWEGSIALLESGILTDEGDLFAPPEDSPEAGAYGVTRERLAAVGLYTRAAKRTDDPAH 525

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
                    +   L   + K +   L R + +L IRHVG   AR+LA  + S     +  
Sbjct: 526 VVDGRVLSANGEKLLAELEKAKTQPLWRVLVALSIRHVGPTAARALATTFGSMDAIRRA- 584

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
                        L     VG IIA+++  ++    +   V              + +V+
Sbjct: 585 ---------SIEELAEAEGVGQIIAESVTAWFAVDWHAEIVRKWAAARVRMEDEVDASVA 635

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +E + +V TG+L+   R + +E +   G   +  +SRKTD ++VG N GSK  KA++L
Sbjct: 636 RTLEGRTVVVTGSLEGFSRDETKEAILSRGGKAAGSVSRKTDWVVVGANAGSKAAKAEEL 695

Query: 705 GVKIMNEEQFLFLLQ 719
           G+++++E QF+ LL+
Sbjct: 696 GLRVLDEAQFVRLLE 710


>gi|116630136|ref|YP_815308.1| NAD-dependent DNA ligase [Lactobacillus gasseri ATCC 33323]
 gi|122272927|sp|Q041K2|DNLJ_LACGA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116095718|gb|ABJ60870.1| NAD-dependent DNA ligase [Lactobacillus gasseri ATCC 33323]
          Length = 668

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 210/715 (29%), Positives = 363/715 (50%), Gaps = 50/715 (6%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+  QA +++  L +++    + YY    P++ D+ YD   +    +   FPDL  S
Sbjct: 1   MAVLTHNQASQKVDELRKKLDEWAEDYYAKDAPVVEDAVYDKAYQELVELEKQFPDLVTS 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +    ++GGE+   L KV H +P LS+  +++ ++L++F  RI +       + + +
Sbjct: 61  ---DSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLVG----HPVAY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y  GK   A+ RG+G  GEDV+A  + I  IP+ L   +    EVR
Sbjct: 114 NVELKIDGLSLSLEYTAGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPEPL--TTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN E    G + +ANPRNAA+G LR+L+     +              
Sbjct: 172 GECYMEKEAFAKLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ + +M  LGF  N   ++  +   +  + +E  + R+ L Y IDG+V KVD+
Sbjct: 232 KNITSQHQAIDEMNRLGFHTNQTGQRLESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G ++
Sbjct: 292 LSLQNELGNTVKVPRWEIAYKFPPEEQETVVKEIEWTVGRTGVVTPTAVMDPVQLAGTVV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN DY++            + +R+GD V + +AG++IP++  +++N+R  D++P+
Sbjct: 352 SRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLNKRPKDSEPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG 
Sbjct: 401 QIPNKCPSCGQDLVHLQDE------VALRCINPM-CPAQVEEGIIHFASRGAMNIMGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +            +   AD++ L   Q +       +  F D S+TNL  SI   +  
Sbjct: 454 RIVKQLIDKN----FVNDVADLYHLTNEQLS------QLDHFKDKSITNLLTSIENSKQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S E  +F LGI HVGA+ AR + + Y + +  +Q               L  +  +G+ I
Sbjct: 504 SAELLLFGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIGETI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+++  ++  P     ++ L              E+   +  + K +V TG L    R +
Sbjct: 554 AESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSDFTRSE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +++
Sbjct: 614 FTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKIEK 668


>gi|300933643|ref|ZP_07148899.1| NAD-dependent DNA ligase LigA [Corynebacterium resistens DSM 45100]
          Length = 680

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 206/722 (28%), Positives = 343/722 (47%), Gaps = 58/722 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++  +       L  E+  H + YY Y  P I D+++DAL  +   +    P+L      
Sbjct: 1   MTTSE--NRWQELADEVRLHRERYY-YGDPTISDADFDALLAQLRTLEDEHPELVTGP-- 55

Query: 72  NGPLNKIGGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             PL ++      +     V H    LSL+ +++   L  ++ R           +  + 
Sbjct: 56  -SPLTEVAPTPPTSSPFRNVDHRERMLSLDNVFDGAQLESWLERT---------PADTYL 105

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEII 185
            E KIDG  I + Y  G+   A  RGDG +GED++   + +  IP+ L       +PE++
Sbjct: 106 TELKIDGASINLLYVNGELELALTRGDGTTGEDITHNAKTLDDIPQKLKGTEEFPVPELV 165

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLG 244
           EVRGEV+I+  DF  +N +  A G K +ANPRNAA+G +R+ N      R L    HG+G
Sbjct: 166 EVRGEVFITVEDFATMNAQRQAEGLKMFANPRNAAAGAMRQKNAEDTAKRPLRLICHGIG 225

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                  + Q+E  Q +   G PV+   +Q ++   +V         R    +++DG+V 
Sbjct: 226 AREGFTPQSQHEAYQAIAAWGLPVSPYTKQVHSAKEVVEQVTYWGEHRHDAAHEMDGVVI 285

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD  S Q +LG  +R+PRW I++K+  ++A T L +I I IGRTG  TP A +EP  + 
Sbjct: 286 KVDSLSEQLELGATSRAPRWAIAYKYPPEEAVTTLRNIRIGIGRTGRATPYAVMEPKYVA 345

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ +T ATLHN                 + + +GDR+++++AGEVIP+V+  + +ER   
Sbjct: 346 GSTVTMATLHNPTEAHR-----------KGVMLGDRIMIRKAGEVIPEVLGPVEDERTGK 394

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +PF + S CP C + +       + +  A  RC    +C  Q   RL +   R AF+I+
Sbjct: 395 ERPFIYSSICPECGTVLA-----PSKEGDADWRCPNTRSCPGQLHTRLTYLSGRGAFDID 449

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
            LG++       S      +   + +F L+++    TT      G  + +   L + +  
Sbjct: 450 ALGERAAYDLINS----GVLSDESGLFNLKKQDLERTTAYSTKAGSLNKAGETLLEKLES 505

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            + + L R I +L IRH G   A++LA +Y S                     +  +  V
Sbjct: 506 AKQVDLWRVIVALSIRHAGPTAAKALAAHYHSIAAIQGA----------SVEEMSTIEGV 555

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK------NVSSEIENKKLVFTGTL 658
           G+IIAQ+I +++    +   V +             +        +  ++   +V TGTL
Sbjct: 556 GEIIAQSIADWFTVDWHRNIVNSWSTAGVRMEEEVPEKSEEDLAQAKLLDGLTIVVTGTL 615

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +   R  A+E +   G   +  +S+KT  ++ G+  GSKL KA+ LGV ++NE+QF+ LL
Sbjct: 616 ENFDRDGAKEAIEARGGKAAGSVSKKTSFLVAGEKAGSKLTKAEDLGVPVLNEQQFVELL 675

Query: 719 QQ 720
           ++
Sbjct: 676 EK 677


>gi|116617684|ref|YP_818055.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122272115|sp|Q03YP0|DNLJ_LEUMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116096531|gb|ABJ61682.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 680

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 238/717 (33%), Positives = 376/717 (52%), Gaps = 51/717 (7%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
               PIE L+ + A++E + L++++  +   YY+   P++ D  YDAL  R  A+   FP
Sbjct: 3   PDFTPIEKLTTQDAQQETARLQKQLVQYGTAYYEDDAPLVEDYIYDALYARLVALEEKFP 62

Query: 64  DLARSEDPNGPLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
                  P+ P   +G  +    L KV H  P LSL  ++++++L  +  R  +      
Sbjct: 63  QYVI---PDSPTQNVGSADTKSELQKVVHPAPMLSLGDVFSLDELNDWDARTTKSLG--- 116

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
            N   + LE KIDG  + + Y  G+ V A+ RG+G  GEDV+A ++ I  IP+ L+  + 
Sbjct: 117 -NQAPYNLELKIDGLAVALTYVDGQLVQASTRGNGIVGEDVTANVKTIKAIPKKLTEPL- 174

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
             IEVRGE+Y+ K  F ALN +  A G +P+ANPRNAA+G LR+LN     +R L  FV+
Sbjct: 175 -TIEVRGEIYMPKASFAALNKQREADGLEPFANPRNAAAGSLRQLNVKITKSRNLAAFVY 233

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
              +   +    Q   L++   LG P +   R  N    I  Y +E  S R +L Y IDG
Sbjct: 234 YTAEPEMLGVTTQSGALERFAELGLPTDTHNRVINKMADIADYIDEYTSERESLSYGIDG 293

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KV++  LQ  LG   + PRW I++KF  ++A T + DI+  +GRTG +TP A ++PV
Sbjct: 294 VVVKVNQLDLQFDLGNTVKIPRWAIAYKFPPEEALTIVCDIEWTVGRTGAVTPTAVMDPV 353

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  +  A+LHN DY++            +DI++GD V + +AG++IP++  +I+ +R
Sbjct: 354 LLAGTTVQRASLHNPDYLR-----------EKDIQIGDTVTLHKAGDIIPEIGQVILEKR 402

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             D++ +  P+ CP C+S +V            A RC     CSAQ  E L HF SR+A 
Sbjct: 403 PTDSETYQVPTICPACESNLVHIEGE------VALRCINPF-CSAQIQEGLTHFASRNAM 455

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI+G+G + +    K    A  I+  A I+ +   Q  +      +  F + S   L D+
Sbjct: 456 NIDGMGPRVVGQLLK----AGYIKDVASIYRITVEQLLT------LDKFQEKSAVKLIDA 505

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           IN  +  SLER +F LGIR VGA+ AR +A+ + +    ++               +  +
Sbjct: 506 INSSKENSLERLLFGLGIRMVGAKAARLIAEKFRTLSAVSEA----------SVEDIANI 555

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQ 659
             +G  IAQ+IV+++  P +   +  L         +     + +S    KK+V TG L+
Sbjct: 556 NGIGHTIAQSIVQYFSTPESKQLLVELASSGVNQSYLSDTVIDENSFFYGKKVVLTGKLE 615

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +  R  A +++   GA V+  +S KTD++I G+  GSKL+KA QLGV +  E+QF+ 
Sbjct: 616 QSSRPAATKWLQDHGANVAGSVSVKTDLVIAGEAAGSKLDKASQLGVTVWTEQQFVD 672


>gi|251782129|ref|YP_002996431.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390758|dbj|BAH81217.1| NAD-dependent DNA ligase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 652

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 216/701 (30%), Positives = 352/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L + ++ +   YY    P + DSEYD L R    + + +P+       + P   
Sbjct: 2   KKRIRELTELLNRYRQEYYTNDSPSVSDSEYDKLYRELVDLENQYPEHVLQ---DSPTQN 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +     +  E K+DG 
Sbjct: 59  VGGTLLTGFDKYQHQYPLFSLQDAFSREELDAFDKRVK-----SEFPDATYLAELKVDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G+    A RGDG  GE+++  ++ I  IP    L  P  I VRGE Y+S+  
Sbjct: 114 SISLSYENGQLQVGATRGDGSVGENITENLKQIKDIP--QVLPQPLTITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N+E    G   +ANPRNAA+G LR+L+   +            + S      Q  +
Sbjct: 172 FKAINEERQENGETEFANPRNAAAGTLRQLDTAVV-AKRQLATFLYQEASPTTRSQQNHV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     +++   I  +   +++ R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LKALADLGFSVNQRHHLSSSMDEIWDFIQTVEAERDQLAYDIDGIVIKVNNLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++ ++R      +  PS CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVSDKRQEQVPMWI-PSQCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           QS +V   +        A RC   L C +     L+HF SR+A NI GLG   ++  F  
Sbjct: 399 QSDLVHFEDE------VALRCINPL-CPSLIQRGLEHFASRNAMNIAGLGPAVVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L +          ++ G  + S   L  +I   ++ S E+ +F L
Sbjct: 450 --LAGLVHDVADIYKLTKEDL------LHLDGIKEKSAEKLLAAIETSKSNSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRH+GA+ +R + +     ++                  +  +  +G +IA+++V+++Q
Sbjct: 502 GIRHIGAKASRLILETCGDIEHLLTVRE----------EDIATIDGLGMVIAKSLVQYFQ 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
               I  VE L            + + ++E+    +V TG L+K+ R+ A+  +  LGA 
Sbjct: 552 QDSAILLVEELKNAGVNLAYLGQKIDSNAELFGLTVVLTGKLEKMTRNDAKAKLETLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD++I G + GSKLEKAQ LG++I  EE    L
Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAQALGIRIEGEEWLEQL 652


>gi|320354711|ref|YP_004196050.1| NAD-dependent DNA ligase [Desulfobulbus propionicus DSM 2032]
 gi|320123213|gb|ADW18759.1| DNA ligase, NAD-dependent [Desulfobulbus propionicus DSM 2032]
          Length = 670

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 247/714 (34%), Positives = 394/714 (55%), Gaps = 50/714 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   +A   L  L  ++ +H   YY    PII D EYDAL R   A+   +P+L  +   
Sbjct: 1   MDKGRAADRLEELRGQLRFHAHRYYVLDDPIISDGEYDALFRELLALEQEYPELVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P +++GG    S  +V H+ P LSL+ I+++++L  F+ + +RF   K D  + F  E
Sbjct: 58  DSPSHRVGGPPLHSFAQVEHASPMLSLDNIFDVQELAAFVDKSFRFL--KADGPLCFMTE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEV 187
           PK+DG  + + Y +G     + RGDG  GED++A ++ +P+IP     N      E + V
Sbjct: 116 PKLDGLAVELVYRQGMLAVGSTRGDGLVGEDITAQLKTVPSIPLRFINNEGIGGAEELIV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEV++SK  F  LN +    G   +ANPRNAA+G LR+L+P     R L+FFV+G+   
Sbjct: 176 RGEVFLSKQGFQLLNQQRQEAGEPLFANPRNAAAGSLRQLDPRITARRRLDFFVYGVANP 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
             + AK Q E+   +  LGFPVN  V+   T   I   Y+ M   R  L Y+IDG+V K+
Sbjct: 236 DSLAAKSQEEVFHGLARLGFPVNPLVQVCATEEEIRQRYHFMLGARHDLTYEIDGIVVKI 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++  LQ++LG  AR+PRW ++ KF   QA+T +  ++ Q+GRTG +TPVA L PV I G 
Sbjct: 296 NDLGLQQRLGTTARAPRWAVAWKFPATQATTVVERVEFQVGRTGAITPVAHLRPVEIDGV 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++  ATLHN+D I             +D+   D VLV+RAG+VIP++V +I  +R     
Sbjct: 356 VVKRATLHNQDEI-----------VRKDLYRYDTVLVQRAGDVIPEIVKVIAEKRDGRQV 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP C   +V+  +       AA RC     C AQQ+++L HF  +   +IEGL
Sbjct: 405 PILFPAECPECGQPLVQKPDE------AAIRCVNP-DCPAQQVQKLIHFAGKSGLDIEGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           GK+ ++   +       +R   D+F L+        K+ ++ G+G+ S  N+ ++I +RR
Sbjct: 458 GKKNVEQLVRE----GLVRSIPDLFNLR------MDKLASLDGWGEKSARNILEAIEQRR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           ++ L +FI +LGIRHVG   A  LA+++   +                  +L+RV  +G+
Sbjct: 508 SLPLAQFIAALGIRHVGEVTASVLAEHFRELRELMAA----------KKEALLRVEGIGE 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
             A +++E++Q+P  +  VE L +       R      + +  +  +FTGTLQ + R +A
Sbjct: 558 QTADSVIEYFQDPLTVAMVEQLNRAGVVI--RSSTAGGAPLTGRVFLFTGTLQTLSRDEA 615

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ V  LGA V+  +S +   ++ G+  GSKL+KA+++G+ I+ E+QFL L+ +
Sbjct: 616 KQLVKALGAQVATSMSHRVTDVVSGEKAGSKLKKAKEMGLPILTEQQFLPLVAR 669


>gi|319399869|gb|EFV88116.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis FRI909]
          Length = 665

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 241/708 (34%), Positives = 377/708 (53%), Gaps = 53/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +K +  L   ++ +   YY    P + DSEYD L      I   +P+       + 
Sbjct: 1   MQDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFK---STDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDLRKF  RI           + +  E K
Sbjct: 58  PTVRVGGEAQSSFKKVNHDTPMLSLGNAFNEEDLRKFDQRIRDSIG-----QVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  +   +    EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--FEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   +E  A 
Sbjct: 171 PRRSFIHLNNEKEENGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L+++  LGF  N    + +   G+++Y  +  S R +L YDIDG+V KV++ S Q
Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRESLSYDIDGIVIKVNDLSQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V++K+AG++IP+VV  I++ R  +++ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++++     I+  ADIF L+            +   G   V NL  +I K +  SLE 
Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDL------LPLERMGKKKVDNLLLAIEKSKEQSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +     +   +           LI +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SE-IENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +E L  +      +  K            K +V TG L+++ R++A E
Sbjct: 553 VTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIDGHPDFSGKTIVLTGKLEQMTRNEASE 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++   GA V+  +++ TDI+I G + GSKL KA++ G +I  E  F+ 
Sbjct: 613 WLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFIE 660


>gi|293365500|ref|ZP_06612209.1| NAD-dependent DNA ligase LigA [Streptococcus oralis ATCC 35037]
 gi|307703456|ref|ZP_07640398.1| DNA ligase, NAD-dependent [Streptococcus oralis ATCC 35037]
 gi|291315868|gb|EFE56312.1| NAD-dependent DNA ligase LigA [Streptococcus oralis ATCC 35037]
 gi|307622863|gb|EFO01858.1| DNA ligase, NAD-dependent [Streptococcus oralis ATCC 35037]
          Length = 652

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 210/700 (30%), Positives = 357/700 (51%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   ERMNELVALLNRYATEYYTSDNPSVSDSEYDCLYRELVELEAAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKFSHQYPLYSLQDAFSREELEAFDARVRKEIPHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE G  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYENGILVAGATRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q ++L
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A +   +  +  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 EHLEQLGFVVNPKRILAQSIDEVWDFIQEVGQEREKLPYDIDGVVIKVNDLAGQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCD 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S+++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SQLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ L+            + G  + S + LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLKENDF------LLLEGVKEKSASKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +++ S +N AQ           D   +  +  +G +IAQ++  ++  
Sbjct: 503 IRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGSVIAQSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   ++ L +       +       + +    +V TG L+++ R +A+  +  LGA V
Sbjct: 553 EGSKILLDELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLTRSEAKNKLEILGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KT++++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSVSKKTNLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652


>gi|168705071|ref|ZP_02737348.1| NAD-dependent DNA ligase [Gemmata obscuriglobus UQM 2246]
          Length = 678

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 212/708 (29%), Positives = 349/708 (49%), Gaps = 45/708 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            +  + L +++ +H+  YY  + P+I D E+D L +    I  A P L     P+ P  +
Sbjct: 10  AERAAELRKQLDHHNYLYYVEAAPVISDREFDTLLKELADIERANPGLV---TPDSPTQR 66

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG+      +VTH  P LS++  ++  DLRKF   + +        ++ +  E KIDG 
Sbjct: 67  VGGQPIPGFKQVTHKTPMLSIDNSYDEGDLRKFDADVRKAVG--PGAAVDYVTELKIDGV 124

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKN 196
            +++ YE G   +AA RG G  G+DV+  I+ I  IP    + N P I EVRGEVY+++ 
Sbjct: 125 SMSLTYENGVLAFAATRGSGTVGDDVTHNIKTIAAIPLKLKTSNPPAIFEVRGEVYMTRG 184

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQY 255
           +   +N E     ++PY N RN  +G L+  +P +  TR L FF +G G    +    Q 
Sbjct: 185 ELARINAEQAKGNQEPYKNARNLTAGTLKLKDPRECATRKLAFFAYGSGDIGGLAITTQA 244

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
            ML K++  GFPVN   R   +   +++Y  E +  R  L YD DG+V KV++++ ++++
Sbjct: 245 AMLAKLKEFGFPVNPHERVCGSIDEVIAYCQEWEPKRKELAYDTDGIVVKVNDWAQRERI 304

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP-VNIGGALITNATLH 374
           G  A+ P+W  ++KF  +QA+T+L  +   +G+ G LTPVA  +P V + G  +T+A++H
Sbjct: 305 GYTAKVPKWAKAYKFEAEQATTKLGKVVFYLGKFGELTPVATFDPPVQLAGTTVTHASMH 364

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N  ++             RD+R+GD V+V++ GE+IP+VVD+I  +R    Q  ++P  C
Sbjct: 365 NASWV-----------AERDVRIGDTVVVEKKGEIIPQVVDVIKADRTGAEQVITWPDKC 413

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C   V ++ +  +        C     C AQ  +RL+ F  +    I+GLG++     
Sbjct: 414 PKCGGPVEKEESATSYN----FICANTGVCPAQLAKRLEGFAKKTRMEIDGLGREVAVQL 469

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
             +E     ++  AD++ L + Q         + GF D    NL D I   +   L R +
Sbjct: 470 VDTE----LVKSVADLYRLTKAQL------LALEGFKDKKAQNLLDGIAASKGRGLARLL 519

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             L I  VG  ++  L + +                       L RV   G   AQ +  
Sbjct: 520 PGLTIYMVGEAMSDLLVEEFPDIDLIIAA----------APEDLARVKGFGPKRAQFVRA 569

Query: 615 FYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           F+ +      +  L +         +        +  K +V TGTL    R   ++ +  
Sbjct: 570 FFDSESGRQLIADLKQFGIKMTHDKKAAPTGGLPLAGKTVVVTGTLVNYDRIGIEQAIKD 629

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            GA  S  +S+KTD ++VGD PGSK +KA++LGVKI+NE +F  ++ +
Sbjct: 630 AGAKASGSVSKKTDFVLVGDKPGSKADKAKELGVKIINEAEFRQMIGE 677


>gi|312144161|ref|YP_003995607.1| DNA ligase, NAD-dependent [Halanaerobium sp. 'sapolanicus']
 gi|311904812|gb|ADQ15253.1| DNA ligase, NAD-dependent [Halanaerobium sp. 'sapolanicus']
          Length = 670

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 242/712 (33%), Positives = 400/712 (56%), Gaps = 48/712 (6%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+ E+A+K++ +L ++I   +  Y+    P I D+E+D L +    +   FP+L  +
Sbjct: 1   MNNLNKEKAKKKIKALREKIRKAEYRYFVLDDPQISDAEFDKLMQDLLKLESQFPELVTA 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P  ++GGE+     KV HS   LSL+  +N E+LR F  R+ +   ++D     +
Sbjct: 61  ---DSPTQRVGGEVLDEFEKVEHSTEMLSLDNSFNAEELRGFDQRVKKNTTERDYQ---Y 114

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG    IRY+ G F   A RG+G  GE+++  ++ I ++P  L +     +E+R
Sbjct: 115 IVEHKIDGLSAVIRYQGGSFQLGATRGNGEVGENITENMKTIRSLP--LKIEDKAELELR 172

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247
           GE+Y+SK++F  +N++ +   +KP+ANPRNAA+G +R+L+     +R L+  ++ L   S
Sbjct: 173 GEIYLSKSEFERINEKRLENEKKPFANPRNAAAGSVRQLDSKIAASRRLSILIYDLISHS 232

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               +   E+   +   GF VN   ++A+    ++    E +  R +L ++IDGLV K++
Sbjct: 233 NREFETHLEVFAYLEEQGFNVNWH-KKADDIGKVIEICQEWEEKRESLDFEIDGLVVKIN 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             +L+++LG  ARSPRW I++KF  +Q +TR+  I+I +GRTG LTP A LEPV I G+ 
Sbjct: 292 NLNLREELGSTARSPRWAIAYKFPAQQKTTRVKSIEISLGRTGALTPTAVLEPVEIAGST 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNED IK            +DIR+GD VLV++AG+VIP+VV +I  +R    + 
Sbjct: 352 VSRATLHNEDEIKR-----------KDIRIGDIVLVQKAGDVIPEVVKVIKEKRDGCEKE 400

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP+C ++V R          A  RCT  ++C AQ+ E++ HFVSRDA NIEG+G
Sbjct: 401 FEMPDHCPVCGTKVKRPEGE------AVTRCTN-ISCPAQRKEKILHFVSRDAMNIEGVG 453

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
              +D   +++     I    D++ L++        ++N+   G+ S  N+ D+I + ++
Sbjct: 454 PALVDQLLEND----LIDDYGDLYFLKKH------HLQNLERMGEKSSQNVIDAIKQSKD 503

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R I++LGIRHVG   AR+L+  Y S     +  N            L  +  +G +
Sbjct: 504 REFFRVIYALGIRHVGLGAARTLSDNYSSISQLMEASN----------EELEEIDEIGPV 553

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IA +I++F+   +N   +  L +        + +     +E  K VFTG+L    R + +
Sbjct: 554 IADSIIDFFAEKQNRDLISRLRQAGINLSRENTEEKEKFLEGLKFVFTGSLNDFTRSEVK 613

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + V + G    + +S KTD +++GDNPGSK +KAQ+LG+KI++E +F  LL+
Sbjct: 614 DLVEKAGGRSVSSVSSKTDYLVIGDNPGSKYQKAQELGIKILSESEFKELLE 665


>gi|315095035|gb|EFT67011.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL060PA1]
          Length = 740

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 209/743 (28%), Positives = 339/743 (45%), Gaps = 74/743 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R   + L Q I    D YY    P I D+EYD L      +    P+L     P+ P  +
Sbjct: 21  RHHWTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPTQR 77

Query: 78  IGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G          V H    LSL+ ++  ++L ++I+R+     K  +    F  E KIDG
Sbjct: 78  VGAPQRVTDFAPVKHLERLLSLDNVFTRDELSEWISRVATAVGKIPN----FLCELKIDG 133

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVYISK 195
             + + Y  G+ V  A RGDG  GEDV+A +R I  IP+ L+ +     +EVRGEV+   
Sbjct: 134 LAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVFFPV 193

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF  LN  ++  G+ P+ANPRNAA+G LR+ +     +R L+  VHG+G         Q
Sbjct: 194 ADFTDLNAALVEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFPSQ 253

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
                K+   G PV+   +       +  +       R    + IDG+V KVD+ SLQ++
Sbjct: 254 GHAYDKLAQWGLPVSPYFKIVEHADEVQEFVTRWGESRDEASHQIDGVVVKVDDVSLQRK 313

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   + PV + G+ +  ATLH
Sbjct: 314 LGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVAVAGSTVEMATLH 373

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   +K            + + +GD V++++AG+VIP+++  +V  R+   + F  P  C
Sbjct: 374 NAFEVKR-----------KGVLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMPDHC 422

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + +  + N          RC     C +Q  ER+    SR A +IE LG +     
Sbjct: 423 PSCGAELAYEKN-----GDKDLRCPNAQGCPSQLHERVFGLASRGALDIEALGWEAAIAL 477

Query: 495 FKSED----------------------PAFSIRIPADIFT----LQRRQQTSTTKIENIL 528
              E+                       A    +  D        +RR+         + 
Sbjct: 478 TDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQPDDLAEVKVWRRRKVNGGPGPWQLE 537

Query: 529 GFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
            +                   ++D + K ++  L R + +L IRHVG   AR+LA ++ S
Sbjct: 538 PYFFTKATAKKPSAPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATHFGS 597

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
            +   +               L  V  VG+IIA+++  +++   +   +           
Sbjct: 598 VEAIREA----------SVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGVRMA 647

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              ++     +E   +V TG+L+   R +A+E +   G   +  +SRKTD ++VG+N GS
Sbjct: 648 DDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGENAGS 707

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQ 719
           K  KA+ LG  I++E  F +LL+
Sbjct: 708 KEIKARDLGRPILDEAGFRYLLE 730


>gi|330752433|emb|CBL87383.1| DNA ligase [uncultured Flavobacteria bacterium]
          Length = 663

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 216/704 (30%), Positives = 359/704 (50%), Gaps = 47/704 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+ +  L  E+  H+  YY    P I D E+D   ++   +   +P+L    DPN P  +
Sbjct: 4   RELIFQLRNELRKHNHNYYVLDTPTISDFEFDIKLKKLQVLESQYPEL---SDPNSPTMR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +  +   V H+    SL+  ++  DL  + +R+ R      D  + +T E K DG 
Sbjct: 61  VGGAVTKNFQTVFHAQRMYSLDNSYSKSDLLDWESRVKRAV----DGPVSYTCELKYDGA 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I+I Y+ G    A  RGDG+ G+DV+A ++ I ++P VL  + PE  E+RGE+ +    
Sbjct: 117 SISITYKNGCLFRALTRGDGNKGDDVTANVKTIKSLPLVLQGDFPESFEIRGEIILPFKG 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N + I+ G +P+ NPRN ASG L+  + +++ R     +    +      K QYE 
Sbjct: 177 FKAMNKQRISQGEEPFKNPRNTASGSLKLQDSSEVARRPLECLLYSIEGENTGIKYQYEN 236

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+K R  GF V    +  ++   ++ +       R  LPY+IDG+V KV++   Q +LG 
Sbjct: 237 LEKARMWGFKVPEEAQCVDSIEAVLKFIEHWDKARYDLPYEIDGIVVKVNDLQQQAELGF 296

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A++PRW +++KF  +Q STRL  I  Q+GRTG +TPVA LE V + G ++  A+LHN D
Sbjct: 297 TAKAPRWAMAYKFKAEQVSTRLNYISYQVGRTGAITPVANLEAVELAGTVVKRASLHNAD 356

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I  L           D+RVGD V V++ GE+IPK++ + +++R   A    + S CP C
Sbjct: 357 QILKL-----------DVRVGDAVFVEKGGEIIPKIIGVDLSKRILGASKTKYISECPDC 405

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           ++ ++R          A H C   + C  Q + R++H++SR A +IEGLG + +      
Sbjct: 406 KTPLIRKDGE------AQHYCPNTIGCPPQIIGRIQHYISRKALDIEGLGGETVAMLV-- 457

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  I+ PAD++TL+ +       +  +      S  NL   +   + I  ER +F L
Sbjct: 458 --AAGLIKDPADLYTLEIKD------LLPLERMAQKSAENLIKGVQSSKQIPFERVLFGL 509

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR+VG  +A+ LAK+Y +    ++               L  V  +G  IA+++  F++
Sbjct: 510 GIRYVGETVAKILAKHYKTVHALSEA----------SVEDLEAVDEIGIKIAKSVYAFFR 559

Query: 618 NPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           N  +I  +  L               N ++ +   ++V +G   ++ R++ +  +   G 
Sbjct: 560 NDVSIRLLSRLYSYGLQLSLSDEVLANQTTLLTGHRIVVSGVFDQVSRNELKRLIEANGG 619

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            V + +S KT  +I G N G SK +KA+ LG+ ++ E+ FL  +
Sbjct: 620 KVVSSISSKTSYLIAGSNVGPSKRQKAENLGITVLTEQAFLDKI 663


>gi|327489925|gb|EGF21714.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1058]
          Length = 652

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 217/701 (30%), Positives = 355/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRVRK-----EFPQASYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N      G   +ANPRNAA+G LR+L+   +    N       + S   A  Q  +
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQADSQEAV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+  L F VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++LG 
Sbjct: 231 LNKLADLDFSVNPTHILADSIEAVWKFIEKIAQERDSLPYEIDGIVIKVNDLAVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  +      PS CP C
Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EIPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           +S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNINGLGPAVVEKLFAQ 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  A I+ L          +  +  F + S   LY +I   +  S E  +F L
Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAECLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + +      +Q               +  +  +G +IAQ++  +++
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +  L +          +    + +    +V TG LQK+ R++A+E +  LGA 
Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VS  +S+KTD+++ G++ GSKL KAQ+LG++I +E+    L
Sbjct: 612 VSGSVSKKTDLVVAGEDAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|307709253|ref|ZP_07645711.1| DNA ligase, NAD-dependent [Streptococcus mitis SK564]
 gi|307619836|gb|EFN98954.1| DNA ligase, NAD-dependent [Streptococcus mitis SK564]
          Length = 648

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 213/698 (30%), Positives = 355/698 (50%), Gaps = 51/698 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++GG
Sbjct: 1   MNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELESAYPDQVLA---DSPTHRVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           ++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  I+
Sbjct: 58  KVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEVAHP-----TYICELKIDGLSIS 112

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F  
Sbjct: 113 LTYEKGILVAGATRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASFDQ 170

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q ++L+ 
Sbjct: 171 VNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVLKH 229

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +  LGF VN     A     I  +  E+   R +LPYDIDG+V KV++ + Q++LG   +
Sbjct: 230 LEQLGFVVNPKRILAENIDEIWHFIQEVGEERDSLPYDIDGVVIKVNDLAGQEELGFTVK 289

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI 
Sbjct: 290 APKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI- 348

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
                       +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S 
Sbjct: 349 ----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCDSG 397

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F     
Sbjct: 398 LLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----A 446

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
           A  ++  ADI+ LQ            + G  + S   LY +I   +  S E+ +F LGIR
Sbjct: 447 ANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIR 500

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           HVG + ++ L +++ S +N AQ           D   +  +  +G +IA+++  ++    
Sbjct: 501 HVGNKASQLLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFATEG 550

Query: 621 NICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
           +   +  L +       +      ++ +    +V TG L++++R +A+  +  LGA V+ 
Sbjct: 551 SEILLRELKEAGVNLDYKGQTVVANAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTG 610

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +S+KTD+++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 611 SVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL 648


>gi|73662196|ref|YP_300977.1| NAD-dependent DNA ligase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|84028903|sp|Q49YU8|DNLJ_STAS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|72494711|dbj|BAE18032.1| NAD-dependent DNA ligase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 667

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 234/712 (32%), Positives = 380/712 (53%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   +  +  L + ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADIQSRVDELHRLLNQYSYEYYVKDNPSVPDSEYDKLLHELIDIETQHPEY---RTADS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +  KV H  P LSL   +N EDLRKF  RI       +  ++ +  E K
Sbjct: 58  PTVRVGGSAQSTFEKVNHDTPMLSLGNAFNEEDLRKFDQRIR-----DNIGNVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  ++ I  IP  ++ +     EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLKTIHAIPLKINESR--TFEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+   A   +P+ANPRNAA+G LR+L+      R L+ F++ +   ++  A 
Sbjct: 171 PRKSFVNLNEAKAANEEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFTQFNAD 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N   ++  T   +++Y ++    R  LPYDIDG+V KV+    Q
Sbjct: 231 TQSEALDELDQLGFKTNQERQRVQTIEEVMTYIDKWTKQRENLPYDIDGIVIKVNALEQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG   +SPRW I++KF  ++  T LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 ETLGFTQKSPRWAIAYKFPAEEVVTELLDIELSIGRTGVVTPTAVLEPVRVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             +DIR+GD V++K+AG++IP+V+  +++ R  DA+ +  PS
Sbjct: 351 LHNEDLIH-----------DKDIRIGDSVVIKKAGDIIPEVIKSVLDRRPDDAEIYHMPS 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C+  +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCEHELVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +++E     I+  ADIF L +           +   G+  V NL ++I K ++ SLE+
Sbjct: 453 QLYENEK----IKDVADIFYLTKEDL------LPLDRMGEKKVDNLLNAIEKAKSNSLEQ 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ +A+ Y +                    +L+ +  VG  +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVIAEKYGTIDELFHVTE----------EALMDIHDVGHKLAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHKAQE 668
           V + +N      ++ L  +    I +  K    E     ++K +V TG L ++ R++A  
Sbjct: 553 VTYLENEDIRALIDKLKAKNVNMIYKGVKTTELEGHPDFKDKTIVLTGKLYQMTRNEASN 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++   GA V+  +++ TD++I G++ GSKL KA++ G +I +EE F+    +
Sbjct: 613 WLALQGAKVTNSVTKNTDLVIAGEDAGSKLAKAEKFGTEIWSEEAFVQKQNE 664


>gi|315660157|ref|ZP_07913014.1| NAD-dependent DNA ligase LigA [Staphylococcus lugdunensis M23590]
 gi|315494838|gb|EFU83176.1| NAD-dependent DNA ligase LigA [Staphylococcus lugdunensis M23590]
          Length = 667

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 241/708 (34%), Positives = 377/708 (53%), Gaps = 53/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +  ++ L   ++ +   YY    P + DSEYD L      I    P+   +   + 
Sbjct: 1   MDNLQHRVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIQIEADHPEYKTT---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDL++F  RI           + +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVRHDTPMLSLGNAFNEEDLKRFDQRIRDHIG-----EVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE GKFV    RGDG +GED++  +R I  IP  L   +    EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGKFVQGLTRGDGTTGEDITENLRTIHAIPLKLKEPLN--FEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F++LN +      +P+ANPRNAA+G LR+L+      R L+ F++ +   S+  A 
Sbjct: 171 PRASFMSLNKQKEKNNEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFSDFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q + L ++  LGF  NN     +   G+++Y  +  + R +L YDIDG+V KV++ + Q
Sbjct: 231 TQSDALDELDRLGFKTNNERECVSDIDGVLAYIEKWTAKRESLAYDIDGIVIKVNDLAQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  TRLLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVVTRLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I+  R  DA+ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVKSIIERRPNDAETYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C  ++VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHKLVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++ E     I+  ADIF L             +   G   V NL  +I+K ++ SLE 
Sbjct: 453 QLYQHE----LIKDVADIFYLTEEDL------LPLERMGKKKVENLLQAIDKAKSNSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+GA+ +  LA+ Y + +                   LI +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGAKASYVLAEKYETIERLLTVTE----------DELISIHDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +  L  +      +  K        E ++K +V TG L+++ R +A +
Sbjct: 553 VTYLENEDIQSLISKLANKDVNMTFKGVKISELAGHPEFQDKTIVLTGKLEQMTRKEAAD 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++   GA V+  +++ TD++I G++ GSKL KAQ+ G +I +E  F+ 
Sbjct: 613 WLQLQGAKVTNSVTKNTDLVIAGEDAGSKLTKAQKFGTEIWSESDFIS 660


>gi|239906999|ref|YP_002953740.1| NAD-dependent DNA ligase [Desulfovibrio magneticus RS-1]
 gi|239796865|dbj|BAH75854.1| NAD-dependent DNA ligase [Desulfovibrio magneticus RS-1]
          Length = 704

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 238/732 (32%), Positives = 356/732 (48%), Gaps = 63/732 (8%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +I +  +        L  L   I  +D  YY    P + D+ YDAL R   A+  A P+L
Sbjct: 1   MIAVSTIDPA---ARLRELRDLIHEYDYRYYVLDDPTVEDAAYDALYRELKALEEAHPEL 57

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD--D 123
           A   DPN P  ++GG +        H     SL+     ++ R F+TR     ++     
Sbjct: 58  A---DPNSPTRRVGGAVLEGFASKPHRRRMYSLDNAMAEDEWRDFVTRAANKLERDGVAF 114

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--- 180
           ++  F ++PK DG  + I YE G +  A  RGDG  GEDV+  +R +  +P  L  +   
Sbjct: 115 DAPAFWVDPKFDGLALEIIYENGVYAGALTRGDGEVGEDVTENVRTVRNVPLDLRPHAAR 174

Query: 181 ----IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRY 235
               +P ++EVRGEV +++ DF  LN+     G K +ANPRNAA+G +R+L+     TR 
Sbjct: 175 AGLPVPRLLEVRGEVVMTRQDFYELNERQREQGGKVFANPRNAAAGSVRQLDSRISATRP 234

Query: 236 LNFFVHGLGKTSE------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289
           L FF + +G                  ++  ++ LG PV    +       +  Y+  M 
Sbjct: 235 LTFFTYAVGSQDWGDGLAGPGWATHSAVMAGLKALGLPVAGQGKVVTA-DEVYPYFEAMG 293

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
             R  LP++IDG+V KVD  +LQ+ LG   R+PR+ ++ KF   +A T L  ID+Q+GRT
Sbjct: 294 RQRQELPFEIDGVVVKVDSLALQEALGFTDRAPRFAVALKFPAHEAETVLKHIDVQVGRT 353

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G+LTPVA LEPV++ G  +  ATLHNED IK            +D+R GD V+V+RAG+V
Sbjct: 354 GVLTPVAILEPVSLAGVTVARATLHNEDEIK-----------AKDLRPGDTVVVRRAGDV 402

Query: 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
           IP+VV ++ ++R  +A+P+ FP  CP C S  VR          AA RC   LAC A   
Sbjct: 403 IPEVVRVVEDKRPAEAEPYDFPHVCPSCGSDAVRGEGE------AAWRCVN-LACPAMLR 455

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
             + +FVS+   +IEGLG + +            ++ PAD+F L         ++     
Sbjct: 456 RGISYFVSKSGLDIEGLGAKWVAALIDK----GMVKSPADLFDLTEADLLPLERMAEKSA 511

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
              V+            + SL + I +LGIR VG   AR+LA ++               
Sbjct: 512 ANFVAAVAAAKQ-----SASLVKLIAALGIRQVGTRTARTLAGHFHDLDALGAA------ 560

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SE 646
                   L  +P +G  +A +I EF+ N  N   +E         +G  +       + 
Sbjct: 561 ----SLEELTALPDIGPEVAGSIREFFANEANRELLERFKGIGLWPVGEAKPETPAVQTA 616

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K+ +FTG L  + R  AQ+ V   G VV   +S+K D ++ G +PGSKL KAQ LG+
Sbjct: 617 LTGKRFLFTGALPDLTREAAQKLVEAAGGVVVGSVSKKLDYLVAGADPGSKLAKAQALGI 676

Query: 707 KIMNEEQFLFLL 718
            I++ E F  LL
Sbjct: 677 TILSPEAFAALL 688


>gi|325687188|gb|EGD29210.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK72]
          Length = 652

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 219/701 (31%), Positives = 357/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  R+ +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRVRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N      G   +ANPRNAA+G LR+L+   +    N       + S   A  Q E+
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQADSQEEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+  LGF VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++LG 
Sbjct: 231 LNKLADLGFSVNPTHILADSIEAVWKFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  +      PS CP C
Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEAL-EVPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           +S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNIAGLGPAVVEKLFAQ 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  A I+ L          +  +  F + S   LY +I   +  S ER +F L
Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + +      +Q               +  +  +G +IAQ++  +++
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +  L +          +    + +    +V TG LQK+ R++A+E +  LGA 
Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 612 VSGSVSKKTDLVVAGADAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|325295048|ref|YP_004281562.1| DNA ligase [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065496|gb|ADY73503.1| DNA ligase [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 723

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 217/730 (29%), Positives = 365/730 (50%), Gaps = 57/730 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +  LS E+A++    L + I YHD  YY  + P+I D +YD L    + +     ++  
Sbjct: 28  YLGKLSTEEAKELAEKLRKVIRYHDYKYYVLASPVISDYQYDKLFHALEDLEKVHSEII- 86

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  +I         KV H     SLE  ++ EDL+++  ++ +   ++    + 
Sbjct: 87  --TPDSPTQRIAPAFTGEFEKVKHLAEMTSLENTYSPEDLKEWDRKVKQLLGRE---EVE 141

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-- 185
           + +EPK DG  + + YE      A  RGDG  GED++  +R I +IP     +   I   
Sbjct: 142 YIVEPKFDGASVELVYEDDLLKRAVTRGDGVIGEDITMNVRTIKSIPLKAPFSRYGINLI 201

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-----YLNFFV 240
            +RGE+ + K+ F  LN E    G   +ANPRNAA+G LR  NP+++ +     Y    +
Sbjct: 202 SIRGEIVMPKSVFEKLNKEREKQGLPLFANPRNAAAGTLRLKNPSEVAKRGLDCYAYQIL 261

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           +  GK      K Q E L+ +   GF      +       ++    + +  R +  ++ D
Sbjct: 262 YSEGKRLCDDIKTQSEALKLLAHCGFKSPRIQKVCKNIDEVIETVLQAQEERESWDFEAD 321

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KV++      LGE    P+W +++KF  KQA T+L+D+  Q+GRTG LTPVA LEP
Sbjct: 322 GMVVKVNDICAWNVLGETMHHPKWAVAYKFPAKQAVTKLVDVVWQVGRTGALTPVAVLEP 381

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GG +++ A+L N D+IK            +DIR+ D V+V+RAGE IP +V  I + 
Sbjct: 382 VEVGGVVVSRASLFNPDFIK-----------QKDIRIFDYVIVERAGETIPYIVAPIKDR 430

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R    +    P+ CP+C++ +V++L+       A  RC   + C AQ  E L ++     
Sbjct: 431 RSGKEKLVEVPTHCPVCKAPIVKELDE------AVPRC-PNINCPAQLKEHLVYWG--KV 481

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +I+GLG+   +   K+E     ++  AD++ L +           + G+G     NL  
Sbjct: 482 LDIKGLGESTANILLKNE----LVKSIADLYYLNKFDLIK------LPGWGLKKAENLLK 531

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
            I K ++ +  + + +LGIRHVG + A+ LA+ +                    +  L  
Sbjct: 532 QIEKSKSATFWKKLTALGIRHVGEKTAQFLAQKFKDINELMNA----------SFSELAS 581

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS----PSIGRHEKNVSSEIENKKLVFTG 656
           +  +G I A +I  F++  +NI  ++ L +             E+ +   +E + +VFTG
Sbjct: 582 IQGIGAITATSIRNFFKAKQNIEMIKRLEETGFYFRRTEEEEKEQKLPKPLEGQNIVFTG 641

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L+   R +AQ  V+ LG   +  +++KT  ++VG+NPGSK  KAQ+LG+K++NEE+FL 
Sbjct: 642 ELEHFTRKEAQYLVSLLGGNPTNSVTKKTSFVVVGENPGSKFAKAQKLGIKLLNEEEFLK 701

Query: 717 LLQQYNTTLR 726
           L+++++    
Sbjct: 702 LIKKFSKDNP 711


>gi|149024919|ref|ZP_01836320.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP23-BS72]
 gi|303259779|ref|ZP_07345754.1| DNA ligase [Streptococcus pneumoniae SP-BS293]
 gi|303262954|ref|ZP_07348889.1| DNA ligase [Streptococcus pneumoniae SP14-BS292]
 gi|303264916|ref|ZP_07350832.1| DNA ligase [Streptococcus pneumoniae BS397]
 gi|303266897|ref|ZP_07352775.1| DNA ligase [Streptococcus pneumoniae BS457]
 gi|303268933|ref|ZP_07354718.1| DNA ligase [Streptococcus pneumoniae BS458]
 gi|147929542|gb|EDK80536.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP23-BS72]
 gi|301794230|emb|CBW36650.1| DNA ligase [Streptococcus pneumoniae INV104]
 gi|302635931|gb|EFL66431.1| DNA ligase [Streptococcus pneumoniae SP14-BS292]
 gi|302638984|gb|EFL69444.1| DNA ligase [Streptococcus pneumoniae SP-BS293]
 gi|302641551|gb|EFL71913.1| DNA ligase [Streptococcus pneumoniae BS458]
 gi|302643595|gb|EFL73864.1| DNA ligase [Streptococcus pneumoniae BS457]
 gi|302645604|gb|EFL75835.1| DNA ligase [Streptococcus pneumoniae BS397]
 gi|332202976|gb|EGJ17044.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA47901]
          Length = 652

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 213/700 (30%), Positives = 355/700 (50%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q + L
Sbjct: 173 DQVNQVRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ LQ            + G  + S   LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +Y+ S +N +Q           D   +  +  +G +IA+++  ++  
Sbjct: 503 IRHVGSKASQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   +  L +       +       + +    +V TG L++++R +A+  +  LGA V
Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|149003762|ref|ZP_01828594.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP14-BS69]
 gi|237650785|ref|ZP_04525037.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae CCRI 1974]
 gi|237822373|ref|ZP_04598218.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147758208|gb|EDK65210.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP14-BS69]
          Length = 652

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 213/700 (30%), Positives = 355/700 (50%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q + L
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ LQ            + G  + S   LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +Y+ S +N +Q           D   +  +  +G +IA+++  ++  
Sbjct: 503 IRHVGSKASQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   +  L +       +       + +    +V TG L++++R +A+  +  LGA V
Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|57867376|ref|YP_189011.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis RP62A]
 gi|81674000|sp|Q5HN30|DNLJ_STAEQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|57638034|gb|AAW54822.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis RP62A]
          Length = 665

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 242/708 (34%), Positives = 378/708 (53%), Gaps = 53/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +K +  L   ++ +   YY    P + DSEYD L      I   +P+       + 
Sbjct: 1   MQGVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFK---STDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDLRKF  RI     K     + +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRDSIGK-----VEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  +   +    EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--FEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   +E  A 
Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L+++  LGF  N    + +   G+++Y  +  S R +L YDIDG+V KV++ S Q
Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRGSLSYDIDGIVIKVNDLSQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V++K+AG++IP+VV  I++ R  +++ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++++     I+  ADIF L+            +   G   V NL  +I K +  SLE 
Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDL------LPLERMGKKKVDNLLLAIEKSKEQSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +     +   +           LI +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SE-IENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +E L  +      +  K            K +V TG L+++ R++A E
Sbjct: 553 VTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIEGHPDFSGKTIVLTGKLEQMTRNEASE 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++   GA V+  +++ TDI+I G + GSKL KA++ G +I  E  F+ 
Sbjct: 613 WLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFIE 660


>gi|297559142|ref|YP_003678116.1| DNA ligase, NAD-dependent [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843590|gb|ADH65610.1| DNA ligase, NAD-dependent [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 775

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 222/743 (29%), Positives = 355/743 (47%), Gaps = 72/743 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            ++ R   + L QE+  H   YY    P+I D+EYD L R    I  ++P LA     + 
Sbjct: 11  PDEVRARHTELCQELDDHSYRYY-LGTPVISDAEYDTLMRELVGIEDSYPALATQ---DS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+G  +++    V H +   SL   +++++L  +  R        +     +  E K
Sbjct: 67  PTQKVGAPISVDFAAVEHLVRMESLGNAFDVDELNAWADR-----ASAEVPVNGYLCELK 121

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGE 190
           IDG  + + YEKG+ V AA RGDG  GED++  +R I  +P  L       PE++EVRGE
Sbjct: 122 IDGLAVDLVYEKGRLVRAATRGDGRVGEDITLNVRTIGVVPERLDESVRPAPELLEVRGE 181

Query: 191 VYISKNDFLALNDEMIAVGRK-PYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           V++   DF  LN+ + A G   P+ANPRNAA+G LR+ +P    TR L+  VHG+G  S 
Sbjct: 182 VFLPVEDFGKLNERITASGEHTPFANPRNAAAGSLRQKDPRVTATRPLSMIVHGVGAYSP 241

Query: 249 IF-------AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
                       Q +  + +   G P+++  R   T   +  Y     + R    Y+IDG
Sbjct: 242 AKDGGGEVAFTSQSQAYRLLGEWGLPLSDRYRVVTTMDEVREYVAHYAAHRHEPAYEIDG 301

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVD+F+LQ++LG  +R PRW I++K+  ++ +TRLLDI + +GRTG +TP   +EPV
Sbjct: 302 IVIKVDDFALQRRLGSTSRVPRWAIAYKYPPEEVTTRLLDIKVGVGRTGRVTPYGVMEPV 361

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ +  ATLHN   ++            + + +GD V++++AG+VIP++V  +++ R
Sbjct: 362 VVAGSEVEFATLHNAREVER-----------KGVLIGDTVVLRKAGDVIPEIVAPVLDRR 410

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + F+ P  CP C + + +       +     RC    +C  Q  ERL    SR A 
Sbjct: 411 DGTERAFAMPESCPECGTTLGQQ-----KEGDVDLRCPNARSCPGQLRERLFFVASRKAL 465

Query: 482 NIEGLGKQQLDFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI---------------- 524
           +IE LG        +  +PA   +R   D+F L                           
Sbjct: 466 DIEALGYVAATALTQPLEPARPPVRDEGDLFDLTVDMLLPIRTHVLDPDTTEPKTDPKTG 525

Query: 525 --------ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                    N  G    +V  L++ + + ++  L R + +L IRHVG   A  LA+++ S
Sbjct: 526 EPKVVSFFANKKGEPKKTVEKLFEQLEEAKSKPLWRVLVALSIRHVGPRAAEDLARHFRS 585

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
                                L  V  VG  IA +I E++    +   V           
Sbjct: 586 MDAIRAASE----------EELAAVDGVGPTIAASIREWFSVDWHAEIVRKWADAGVRME 635

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              + +    +E   +V TG+L+   R  A+E + + G   +A +S+KT  ++VGD+PGS
Sbjct: 636 DEDDGSRPRHLEGVTVVVTGSLEGFSRDGAKEAIAERGGRATASVSKKTGFVVVGDSPGS 695

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQ 719
           K +KA +LGV +++EE F  LL+
Sbjct: 696 KYDKAVKLGVPVLDEEGFRVLLE 718


>gi|169335238|ref|ZP_02862431.1| hypothetical protein ANASTE_01646 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257976|gb|EDS71942.1| hypothetical protein ANASTE_01646 [Anaerofustis stercorihominis DSM
           17244]
          Length = 659

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 229/706 (32%), Positives = 376/706 (53%), Gaps = 48/706 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  +KE+  L +E+  H+  YY+   P I D +YD L R+   +   +P   +      
Sbjct: 1   MEDIKKEIEKLTEELLEHNRKYYEEDNPSISDYDYDMLIRKLTKLEEEYPQYKKEY---S 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P +++GG+   +  KV H    LSL   ++ ++L +F  R+ +     +  +  +TLE K
Sbjct: 58  PTDRVGGKALDAFDKVKHEYKQLSLSNAFSYDELLEFDQRVKK-----EIENPVYTLENK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  I + Y+KG     A RGDG  GEDV+  ++ I +IP  L+  +   + VRGEV I
Sbjct: 113 FDGLTIVLTYKKGLLSVGATRGDGEVGEDVTLNVKTIKSIPLKLNEEV--DLTVRGEVLI 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252
            K++F  +N E    G   +ANPRN A+G +R+L+      R L+ F+  L         
Sbjct: 171 YKDNFEKINKEREKEGLSLFANPRNMAAGSIRQLDSKIAAKRNLDCFIFNLEHIEGKTLS 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E L  ++ LGF V+   +  +    I     + +  R ++PY+IDG V K+++   +
Sbjct: 231 SHSESLDYLKSLGFKVSE-YKIFDNMKDIFDELIKKEDSRKSMPYEIDGAVIKLNDLEER 289

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG   ++PRW I++KF+E +  T+L DI + +GRTG LTPVA LE V I G+ ++ AT
Sbjct: 290 ELLGSTNKNPRWAIAYKFSETKVKTKLTDIIVNVGRTGTLTPVAILEGVRIDGSFVSRAT 349

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNEDYI              DIR+GD V+VK+AGE+IP+V+  +  +R  D + F  P 
Sbjct: 350 LHNEDYI-----------NDNDIRIGDNVIVKKAGEIIPQVISSVKEDRKGDEKLFEMPK 398

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C   VVR       K +          C A+    + HF SR+A NI+ LG++ L+
Sbjct: 399 NCPVCGKEVVRQEGNSAVKCINV-------DCPAKISREIIHFASREAMNIDTLGERVLE 451

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              + +     I+  +DI+ L+ +++     IE++   G+ SV+N+ ++I K +  SLE 
Sbjct: 452 TLIEKD----LIQDVSDIYKLEDKKK----DIESLEKMGEKSVSNMLNAIEKSKENSLED 503

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F+L I  VG + A+ LAK + +  N               +  ++ +  +GD +A  I
Sbjct: 504 LLFALSINLVGKQGAKLLAKRFKTMDNLINA----------SYEDIVDINEIGDKMATEI 553

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           + F++NP  +  +E L          +E+N   + E    V TGTL K +R +A++ +  
Sbjct: 554 INFFKNPSKLALIERLKSVGVNMEYINEENEELKFEGMTFVLTGTLSKYKRSEAKKIIEN 613

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            G  VS+ +S+KT  ++ G+N GSK EKA++LGVKI++E++F  ++
Sbjct: 614 YGGKVSSSVSKKTTYVLAGENAGSKEEKAKELGVKIISEDEFENMI 659


>gi|94676849|ref|YP_588544.1| DNA ligase, NAD-dependent [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|123260587|sp|Q1LU20|DNLJ_BAUCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94219999|gb|ABF14158.1| DNA ligase, NAD-dependent [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 671

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 251/711 (35%), Positives = 385/711 (54%), Gaps = 49/711 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++Q  + +  L Q++ Y +  YY    P + D EYD L  +   +   +PDL  +   + 
Sbjct: 1   MKQIEQYIEQLRQQLRYWNFLYYAKDAPEVSDVEYDWLMMKLRELERQWPDLKTA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   IG +      KV H +P LSL+ I+N      F  RI    Q  ++  + +  E K
Sbjct: 58  PTQHIGYKAQSKFRKVIHEVPMLSLDHIFNDTSFLAFDRRIRNRLQYGNNY-LTYCCELK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL--SLNIPEIIEVRGEV 191
            DG  +++ Y+ GK + AA RGDGH GEDV+  IR I +IP  L    +IP +IE+RGEV
Sbjct: 117 FDGIAVSLLYKHGKLIRAATRGDGHIGEDVTDNIRTICSIPLQLKDDGHIPRLIEIRGEV 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249
            +S++ F  LN+       K +ANPRNAA+G LR+++P+   TR L+FF +G+G+   + 
Sbjct: 177 IMSEDAFRHLNETAKKNKSKRFANPRNAAAGSLRQVDPSITATRLLSFFCYGVGRIDSKK 236

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 E+LQ+ +  G PV+N  R       ++ +Y+ +  +RS L ++IDG+V KV+  
Sbjct: 237 IPAAHLELLQQFKIWGLPVSNYRRYCVGHQEVLDFYSYVSKVRSKLGFNIDGIVIKVNAL 296

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+QLG  AR+PRW I++K    +  T + +ID Q+GRTGI+TPVARL+PV I GA I+
Sbjct: 297 VQQQQLGFVARAPRWAIAYKLPANEQLTEIQNIDFQVGRTGIITPVARLKPVYISGAYIS 356

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NA+LH+   IK L            +R+GD V+++ AG +IP++V+++V++R     P  
Sbjct: 357 NASLHSFAEIKRL-----------GLRIGDTVVIRLAGNIIPQIVNVVVSKRSIKTSPVL 405

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           +P +CP+C S+V ++   KT        CT G+ CSAQ  E LKHFVSR A NI G+G +
Sbjct: 406 YPLYCPVCGSKVKQNNKEKTI------ICTAGMICSAQLKEALKHFVSRRAMNIYGMGGK 459

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D     +     I+ P D+F L + Q         +   G      L D+I   +  +
Sbjct: 460 IIDQLVDLK----IIQNPVDLFRLNQDQL------TCLKNMGQKKTKKLLDAIEYAKKTT 509

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RF++++GIR +G   A  LA YY                   D  SL ++  +G I+A
Sbjct: 510 FARFLYAIGIREIGETKAAYLADYYKHIDALMAA----------DIESLTKIQDIGIIVA 559

Query: 610 QAIVEFYQNPRNICAVEALL--KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
             ++ F+ N  NI  +E L   K     +   EKN  +    K +VFTGTL  + R +A 
Sbjct: 560 TNVLNFFHNKHNIAIIEELCSPKIGIKFLSTLEKN--NYFSGKNIVFTGTLAFLSREEAI 617

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + +  LGA + + +S K D++I G N G KL KA+QL +KI+ E +F  +L
Sbjct: 618 DMLIALGARIRSSVSSKIDLLIAGKNTGFKLTKAKQLQIKIIEEAEFYQIL 668


>gi|149006206|ref|ZP_01829918.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP18-BS74]
 gi|225856757|ref|YP_002738268.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae P1031]
 gi|307127352|ref|YP_003879383.1| NAD-dependent DNA ligase [Streptococcus pneumoniae 670-6B]
 gi|254781432|sp|C1CKI0|DNLJ_STRZP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147761983|gb|EDK68945.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP18-BS74]
 gi|225725530|gb|ACO21382.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae P1031]
 gi|306484414|gb|ADM91283.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae 670-6B]
 gi|332075451|gb|EGI85920.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA41301]
          Length = 652

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 213/700 (30%), Positives = 354/700 (50%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q + L
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ LQ            + G  + S   LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +Y+ S +N  Q           D   +  +  +G +IA+++  ++  
Sbjct: 503 IRHVGSKASQLLLQYFHSIENLYQA----------DSEEVASIESLGGVIAKSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   +  L +       +       + +    +V TG L++++R +A+  +  LGA V
Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|148998387|ref|ZP_01825829.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP11-BS70]
 gi|168576158|ref|ZP_02722052.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae MLV-016]
 gi|194398076|ref|YP_002037745.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae G54]
 gi|225861080|ref|YP_002742589.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230922|ref|ZP_06964603.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254162|ref|ZP_06977748.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502866|ref|YP_003724806.1| DNA ligase (NAD(+)) [Streptococcus pneumoniae TCH8431/19A]
 gi|254781424|sp|B5E4M9|DNLJ_STRP4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781433|sp|C1CRL7|DNLJ_STRZT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147755784|gb|EDK62829.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP11-BS70]
 gi|183577935|gb|EDT98463.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae MLV-016]
 gi|194357743|gb|ACF56191.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae G54]
 gi|225727034|gb|ACO22885.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238461|gb|ADI69592.1| DNA ligase (NAD(+)) [Streptococcus pneumoniae TCH8431/19A]
 gi|327389325|gb|EGE87670.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA04375]
 gi|332075071|gb|EGI85542.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA17545]
          Length = 652

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 213/700 (30%), Positives = 354/700 (50%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q + L
Sbjct: 173 DQVNQVRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ LQ            + G  + S   LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +Y+ S +N  Q           D   +  +  +G +IA+++  ++  
Sbjct: 503 IRHVGSKASQLLLQYFHSIENLYQA----------DSEEVASIESLGGVIAKSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   +  L +       +       + +    +V TG L++++R +A+  +  LGA V
Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|189485424|ref|YP_001956365.1| DNA ligase (NAD+) [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|254781446|sp|B1H072|DNLJ_UNCTG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|170287383|dbj|BAG13904.1| DNA ligase (NAD+) [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 674

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 244/716 (34%), Positives = 379/716 (52%), Gaps = 54/716 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + +   +  +  L +E+  H+  YY+ + P I DSEYD L +  + I    P  A    P
Sbjct: 1   MIMGNIQNRIDYLRKELIRHNGLYYESNNPEISDSEYDNLAKELEQIEKENPLFAL---P 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  KI G ++ S  ++ HS P LSL+  ++ ++  K+  RI +      + +  FT+E
Sbjct: 58  DSPTKKISGFVSSSFEQIKHSSPMLSLDNTYSQKETAKWYERIEKNLN---NKNTEFTIE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGE 190
           PKIDG   ++ Y  G     A RGDG +GED++  I+ +  IP  L   N P   E+RGE
Sbjct: 115 PKIDGVSASLTYINGSLTAGATRGDGETGEDITENIKKVKNIPYKLKADNPPYFFELRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VYI K+DF  LN+E++    + +AN RNAASG LR+ NP     R L FFVH LGK    
Sbjct: 175 VYIDKSDFRKLNEEILMSVGQKFANSRNAASGSLRQKNPQITAERKLRFFVHSLGKIDGK 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             + Q + LQ  R  GF + +  +  ++   I+ +   M + R  L Y+IDGLV KV+  
Sbjct: 235 QFESQSDFLQYCRKCGFQLQDNFKICHSLKEIMDFMEIMINNRDLLHYEIDGLVIKVNSL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQK+LG   +SPRW I+ KF  KQA+T+L  I +Q+GRTGI+TP A LE V + G  I+
Sbjct: 295 QLQKELGYTNKSPRWAIAFKFPAKQATTKLSRIRVQVGRTGIITPSAILESVTLAGVTIS 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           +ATLHN + I+ L           ++  GD VL++RAG+VIPK+V +    +  +   F 
Sbjct: 355 HATLHNFEEIERL-----------NVNEGDTVLIERAGDVIPKIVKV---VKKENRGFFK 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C S +V++   +      A+RC     C AQ    L HFVSR+A +I+G GK 
Sbjct: 401 PPHNCPSCNSGIVKENEEE-----VAYRCINP-ECPAQFRRHLIHFVSRNAMDIDGFGKA 454

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D F   +     I++ ADI+ L+            +  F +   +NL  ++   +   
Sbjct: 455 VIDQFLDRKK----IQVLADIYYLKYDDFIK------LDLFKEKKTSNLMKAVAASKKHP 504

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L + +F+LGIR +G +++  +AK + S +                     RVP +G I+A
Sbjct: 505 LSKLLFALGIRRIGEKVSEIIAKKFKSMEALFNA----------SIEDFTRVPEIGSILA 554

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            ++ EF++N      ++ L+      I    +   ++ + K  V TG L+   R +A + 
Sbjct: 555 LSLKEFFENKTVRNVIDNLIAAGVNMIEPEAEQSGTQFDGKMFVLTGELKNHTREQAGKI 614

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF------LFLLQ 719
           +  LG  V++ +S+KTD I+ G N GSKL+KA++L VKI++E +F      L L++
Sbjct: 615 IRSLGGKVASSVSKKTDYIVAGVNAGSKLKKAKELNVKIVDEAEFDILTGKLSLIE 670


>gi|148994566|ref|ZP_01823725.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP9-BS68]
 gi|168488962|ref|ZP_02713161.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP195]
 gi|147927160|gb|EDK78197.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP9-BS68]
 gi|183572496|gb|EDT93024.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP195]
 gi|332073479|gb|EGI83958.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA17570]
          Length = 652

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 212/700 (30%), Positives = 355/700 (50%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   + +          + S      Q + L
Sbjct: 173 DQVNQVRQENGEPEFANPRNAAAGTLRQLDTAVVAKRS-LATFLYQEASPSTRDSQEKGL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ LQ            + G  + S   LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +Y+ S +N +Q           D   +  +  +G +IA+++  ++  
Sbjct: 503 IRHVGSKASQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   +  L +       +       + +    +V TG L++++R +A+  +  LGA V
Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|225858927|ref|YP_002740437.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae 70585]
 gi|254781425|sp|C1C7B1|DNLJ_STRP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225720821|gb|ACO16675.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae 70585]
          Length = 652

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 213/700 (30%), Positives = 355/700 (50%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L+  +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLTEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q + L
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ LQ            + G  + S   LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +Y+ S +N  Q           D   +  +  +G +IA+++  ++  
Sbjct: 503 IRHVGSKASQLLLQYFHSIENLYQA----------DSEEVASIESLGGVIAKSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   +  L +       +       + +    +V TG L++++R +A+  +  LGA V
Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|77414096|ref|ZP_00790264.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 515]
 gi|77159848|gb|EAO70991.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 515]
          Length = 648

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 219/698 (31%), Positives = 360/698 (51%), Gaps = 51/698 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L   ++ +   YY    P + DS+YD L R    +    P+      PN P +++GG
Sbjct: 1   MNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENIL---PNSPTHRVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
            +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG  ++
Sbjct: 58  LVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRVK-----AEFPTASYMAELKIDGLSVS 112

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y  G     A RGDG+ GE+++  ++ +  IP  L L+    I VRGE Y+ K  F A
Sbjct: 113 LTYVNGILQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKESFEA 170

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           +N E  A G + +ANPRNAA+G LR+LN   +            + S    + Q ++L++
Sbjct: 171 INIEKRANGEQEFANPRNAAAGTLRQLNTGIV-AKRKLATFLYQEASPTQKETQDDVLKE 229

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +   GF VN+    +++   I  +   ++  R +LPYDIDG+V KV+  ++Q++LG   +
Sbjct: 230 LESYGFSVNHHRLISSSMEKIWDFIQTIEKDRISLPYDIDGIVIKVNSLAMQEELGFTVK 289

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN DYI 
Sbjct: 290 APRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI- 348

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
                       +DIR+GD V+V +AG++IP V+++++++R+        P  CP C S 
Sbjct: 349 ----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSCGSE 397

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           +V   +        A RC   L C  Q  ERL HF SRDA NI G G   ++  F     
Sbjct: 398 LVHFEDE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD---- 446

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
           A  I   ADI+ L      +      + G  + S T +Y +I   +  S E+ +F LGIR
Sbjct: 447 AHLIADVADIYRLSIEDLLT------LDGIKEKSATKIYHAIQSSKENSAEKLLFGLGIR 500

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           HVG++ +R L + + + +  +Q              S+  +  +G +IA+++  F++   
Sbjct: 501 HVGSKASRLLLEEFGNLRQLSQASQ----------ESIASIDGLGGVIAKSLHTFFEKEE 550

Query: 621 NICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
               +E L    V+ +      +  +++    +V TG L+K+ R++A+E +  LGA V+ 
Sbjct: 551 VDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAKVTG 610

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +S+KTD+I+ G + GSKL KAQ LG+ I +E+  L L
Sbjct: 611 SVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 648


>gi|327461089|gb|EGF07422.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1057]
          Length = 652

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 223/701 (31%), Positives = 360/701 (51%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  RI +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRIRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N      G   +ANPRNAA+G LR+L+   +    N       + S   A  Q E+
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQADSQEEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+  LGF VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++LG 
Sbjct: 231 LNKLAALGFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  +      PS CP C
Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EIPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           +S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  A I+ L          +  +  F + S   LY +I   +  S ER +F L
Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + +      +Q               +  +  +G +IAQ++  +++
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +  L +E        +K V  + +    +V TG LQK+ R++A+E +  LGA 
Sbjct: 552 QEGSQILLAELQEEGVNLDYLGQKAVADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 612 VSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|324993931|gb|EGC25850.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK405]
 gi|324994750|gb|EGC26663.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK678]
 gi|327463193|gb|EGF09514.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1]
          Length = 652

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 217/701 (30%), Positives = 354/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  RI +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRIRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  I   L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDILLTLKEPL--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N      G   +ANPRNAA+G LR+L+   +    N       + S      Q  +
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQVGSQEAV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+  LGF VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++LG 
Sbjct: 231 LNKLADLGFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  +      PS CP C
Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVDSKRVSEEHL-EIPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           +S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  A I+ L          +  +  F + S   LY +I   +  S ER +F L
Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYIAIQASKENSAERLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + +      +Q               +  +  +G +IAQ++  +++
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSIGTVIAQSLHTYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +  L +          +    + +    +V TG LQK+ R++A+E +  LGA 
Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 612 VSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|289550377|ref|YP_003471281.1| DNA ligase [Staphylococcus lugdunensis HKU09-01]
 gi|289179909|gb|ADC87154.1| DNA ligase [Staphylococcus lugdunensis HKU09-01]
          Length = 667

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 240/708 (33%), Positives = 376/708 (53%), Gaps = 53/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +  ++ L   ++ +   YY    P + DSEYD L      I    P+   +   + 
Sbjct: 1   MDNLQHRVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIQIEADHPEYKTT---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDL++F  RI           + +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVRHDTPMLSLGNAFNEEDLKRFDQRIRDHIG-----EVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE GKFV    RGDG +GED++  +R I  IP  L   +    EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGKFVQGLTRGDGTTGEDITENLRTIHAIPLKLKEPLN--FEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F++LN +      +P+ANPRNAA+G LR+L+      R L+ F++ +   S+  A 
Sbjct: 171 PRASFMSLNKQKEKNNEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFSDFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q + L ++  LGF  N      +   G+++Y  +  + R +L YDIDG+V KV++ + Q
Sbjct: 231 TQSDALDELDRLGFKTNKERECVSDIDGVLAYIEKWTAKRESLAYDIDGIVIKVNDLAQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  TRLLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVVTRLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V+VK+AG++IP+VV  I+  R  DA+ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVVKKAGDIIPEVVKSIIERRPNDAETYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C  ++VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHKLVRIEGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQ 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++ E     I+  ADIF L             +   G   V NL  +I+K ++ SLE 
Sbjct: 453 QLYQHE----LIKDVADIFYLTEEDL------LPLERMGKKKVENLLQAIDKAKSNSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+GA+ +  LA+ Y + +                   LI +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGAKASYVLAEKYETIERLLTVTE----------DELISIHDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +  L  +      +  K        E ++K +V TG L+++ R +A +
Sbjct: 553 VTYLENEDIQSLISKLANKDVNMTFKGVKISELAGHPEFQDKTIVLTGKLEQMTRKEAAD 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++   GA V+  +++ TD++I G++ GSKL KAQ+ G +I +E  F+ 
Sbjct: 613 WLQLQGAKVTNSVTKNTDLVIAGEDAGSKLTKAQKFGTEIWSESDFIS 660


>gi|238854176|ref|ZP_04644523.1| DNA ligase, NAD-dependent [Lactobacillus gasseri 202-4]
 gi|238833252|gb|EEQ25542.1| DNA ligase, NAD-dependent [Lactobacillus gasseri 202-4]
          Length = 668

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 212/715 (29%), Positives = 363/715 (50%), Gaps = 50/715 (6%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+  QA +++  L +++    + YY    P++ D+ YD   +    +   FPDL  S
Sbjct: 1   MAVLTHNQASQKVDELRKKLDEWAEDYYAKDAPVVEDAVYDKAYQELVELEKQFPDLVTS 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +    ++GGE+   L KV H IP LS+  +++ ++L++F  RI +       + + +
Sbjct: 61  ---DSITQRVGGEIKSDLSKVEHPIPMLSMGDVFSKDELKEFDERITKLVG----HPVAY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y  GK   A+ RG+G  GEDV+A  + I  IP+ L   +    EVR
Sbjct: 114 NVELKIDGLSLSLEYTAGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPEPL--TTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN E    G + +ANPRNAA+G LR+L+     +              
Sbjct: 172 GECYMEKEAFAKLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ + +M  LGF  N   R+  +   +  + +E  + R+ L Y IDG+V KVD+
Sbjct: 232 KNITSQHQAIDEMNRLGFHTNQTGRRLESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G ++
Sbjct: 292 LSLQNELGNTVKVPRWEIAYKFPPEEQETVVKEIEWTVGRTGVVTPTAVMDPVQLAGTVV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN DY++            + +R+GD V + +AG++IP++  +++N+R  D++P+
Sbjct: 352 SRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLNKRPKDSEPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG 
Sbjct: 401 QIPNKCPSCGQDLVHLQDE------VALRCINPM-CPAQVEEGIIHFASRGAMNIMGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +            +   AD++ L   Q +       +  F D S+TNL  SI   +  
Sbjct: 454 RIVKQLIDKN----FVNDVADLYHLSNEQLS------QLDHFKDKSITNLLTSIENSKQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S E  +F LGI HVGA+ AR + + Y + +  +Q               L  +  +G+ I
Sbjct: 504 SAELLLFGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIGETI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+++  ++  P     ++ L              E+   +  + K +V TG L    R +
Sbjct: 554 AESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSDFTRSE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +++
Sbjct: 614 FTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIVKIEK 668


>gi|325696052|gb|EGD37943.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK160]
          Length = 652

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 220/701 (31%), Positives = 356/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  RI +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRIRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N      G   +ANPRNAA+G LR+L+   +    N       + S      Q  +
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQVGSQEAV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+  LGF VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++LG 
Sbjct: 231 LNKLADLGFSVNPTHILADSIEAVWEFIEKIAQERDSLPYEIDGIVIKVNDLAVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  +      PS CP C
Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EIPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           +S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  A I+ L          +  +  F + S   LY +I   +  S ER +F L
Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + +      +Q               +  +  +G +IAQ++  +++
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +  L +          +    + +    +V TG LQK+ R++A+E +  LGA 
Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VS  +S+KTD+++ G + GSKL KAQ+LG++I NE+    L
Sbjct: 612 VSGSVSKKTDLVVAGADAGSKLAKAQELGIEIRNEDWLDSL 652


>gi|327474802|gb|EGF20207.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK408]
          Length = 652

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 217/701 (30%), Positives = 355/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEKKYP---TDILPDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  R+ +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRVRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N      G   +ANPRNAA+G LR+L+   +    N       + S      Q  +
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQVGSQEAV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+  LGF VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++LG 
Sbjct: 231 LNKLADLGFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  +      PS CP C
Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EIPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           +S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  A I+ L          +  +  F + S   LY +I   +  S ER +F L
Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + +      +Q               +  +  +G +IAQ++  +++
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +  L +          +    + +    +V TG LQK+ R++A+E +  LGA 
Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 612 VSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|146318834|ref|YP_001198546.1| NAD-dependent DNA ligase LigA [Streptococcus suis 05ZYH33]
 gi|166216250|sp|A4VVK7|DNLJ_STRSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145689640|gb|ABP90146.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Streptococcus suis 05ZYH33]
          Length = 652

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 210/701 (29%), Positives = 358/701 (51%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +S L   ++ +   YYQ  +P + D+EYD L R    +  A P+L     P+ P ++
Sbjct: 2   KTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELIL---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG+M     K +H  P  SL+  ++ E+L  F  R+ +     +     +  E KIDG 
Sbjct: 59  VGGKMLDGFEKYSHVYPLFSLQDAFSREELEAFDQRVRK-----EFPQATYICELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GE+++  ++ +  +P  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEAGNLVVGATRGDGSVGENITENLKRVADVPLTLPEAV--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N +    G   + NPRNAA+G LR+L+   +            + S   A  Q ++
Sbjct: 172 FDRVNKQRQEAGEAEFVNPRNAAAGTLRQLDTGVV-AQRGLATFLYQEASPSEATSQSQV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+K+  LGF  N+    A +      +  ++   R  LPY+IDG+V KV++ ++Q++LG 
Sbjct: 231 LEKLDALGFVTNHEYCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW +++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAVAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++   R         PS CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLKVVDKYRKEQEI-MPIPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           QS +    +        A RC   + C +Q + +L+HF SRDA NI GLG   ++  F  
Sbjct: 399 QSDLQHYEDE------VALRCINPI-CPSQLMSKLEHFASRDAMNIAGLGSSIVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L      +      + GF + S   LY +I   ++ S E  +F L
Sbjct: 450 --GAGLVHDVADIYKLTVDDLLT------LEGFKEKSANKLYQAIQTSKSNSAECLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L + +   +  A            D  ++  +  +G +IA+++  F+ 
Sbjct: 502 GIRHVGSKASKILVEKFGDLETLAFA----------DQEAIASLEGLGQVIAKSLTTFFA 551

Query: 618 NPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +      +  L +  V+ +      + ++ +    +V TG L++++R++A+  +  LGA 
Sbjct: 552 SEGAQQLLAELKEAKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KT++++ G + GS L KAQ+LG++I +E     L
Sbjct: 612 VAGSVSKKTNLVVAGTDAGSTLTKAQELGIEIKDEAWLESL 652


>gi|324991571|gb|EGC23504.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK353]
          Length = 652

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 219/701 (31%), Positives = 358/701 (51%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  R+ +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRVRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N      G   +ANPRNAA+G LR+L+   +    N       + S   A  Q E+
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQADSQEEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+  LGF VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++LG 
Sbjct: 231 LNKLADLGFSVNPTHILADSIEAVWKFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  +      PS CP C
Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEAL-EVPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           +S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  A I+ L          +  +  F + S   LY +I   +  S ER +F L
Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + +      +Q               +  +  +G +IAQ++  +++
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +  L +          +    + +    +V TG LQK+ R++A+E +  LGA 
Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAVLSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VS  +S+KTD+++ G + GSKL+KAQ+LG++I +E+    L
Sbjct: 612 VSGSVSKKTDLVVAGQDAGSKLDKAQELGIEIRDEDWLDSL 652


>gi|76798177|ref|ZP_00780429.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 18RS21]
 gi|77405561|ref|ZP_00782652.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B]
 gi|77410701|ref|ZP_00787060.1| DNA ligase, NAD-dependent [Streptococcus agalactiae CJB111]
 gi|76586485|gb|EAO62991.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 18RS21]
 gi|77163237|gb|EAO74189.1| DNA ligase, NAD-dependent [Streptococcus agalactiae CJB111]
 gi|77175868|gb|EAO78646.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B]
          Length = 648

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 220/698 (31%), Positives = 360/698 (51%), Gaps = 51/698 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L   ++ +   YY    P + DS+YD L R    +    P+      PN P +++GG
Sbjct: 1   MNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEKQHPENIL---PNSPTHRVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
            +     K  H  P  SL+  ++ E+L  F  R+       +  +  +  E KIDG  ++
Sbjct: 58  LVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRVK-----AEFPTAAYMAELKIDGLSVS 112

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y  G     A RGDG+ GE+++  ++ +  IP  L L+    I VRGE Y+ K  F A
Sbjct: 113 LTYVNGVLQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKESFEA 170

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           +N E  A G + +ANPRNAA+G LR+LN   +            + S    + Q ++L++
Sbjct: 171 INIEKRANGEQEFANPRNAAAGTLRQLNTGIV-AKRKLATFLYQEASPTQKETQDDVLKE 229

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +   GF VN+    +++   I  +   ++  R +LPYDIDG+V KV+  ++Q++LG   +
Sbjct: 230 LESYGFSVNHHRLISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSLAMQEELGFTVK 289

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +PRW I++KF  ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN DYI 
Sbjct: 290 APRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI- 348

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
                       +DIR+GD V+V +AG++IP V+++++++R+        P  CP C S 
Sbjct: 349 ----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSCGSE 397

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           +V            A RC   L C  Q  ERL HF SRDA NI G G   ++  F     
Sbjct: 398 LVHFEGE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD---- 446

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
           A  I   ADI+ L      S   +  + G  + S T +Y +I   +  S E+ +F LGIR
Sbjct: 447 AHLIADVADIYRL------SIENLLTLDGIKEKSATKIYHAIQSSKENSAEKLLFGLGIR 500

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           HVG++ +R L + + + +  +Q              S+  +  +G +IA+++  F++   
Sbjct: 501 HVGSKASRLLLEEFGNLRQLSQASQ----------ESIASIDGLGGVIAKSLHTFFEKEE 550

Query: 621 NICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
               +E L    V+ +      +  +++    +V TG L+K+ R++A+E +  LGA V+ 
Sbjct: 551 VDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAKVTG 610

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +S+KTD+I+ G + GSKL KAQ LG+ I +E+  L L
Sbjct: 611 SVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 648


>gi|329726878|gb|EGG63336.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU144]
          Length = 665

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 241/708 (34%), Positives = 378/708 (53%), Gaps = 53/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +K +  L   ++ +   YY    P + D+EYD L      I   +P+       + 
Sbjct: 1   MQDVKKRVGKLHDLLNQYSYEYYVQDNPSVPDNEYDKLLHELIEIEEKYPEFK---STDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N EDLRKF  RI     K     + +  E K
Sbjct: 58  PTVRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRDSIGK-----VEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++YE G+FV    RGDG +GED++  +R I  IP  +   +    EVRGE Y+
Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLN--FEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  F+ LN+E    G +P+ANPRNAA+G LR+L+      R L+ F++ +   +E  A 
Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L+++  LGF  N    + +   G+++Y  +  S R +L YDIDG+V KV++ S Q
Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRGSLSYDIDGIVIKVNDLSQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +++G   +SPRW I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+
Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             RDIR+GD V++K+AG++IP+VV  I++ R  +++ +  P+
Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C   +VR           A RC     C AQ +E L HFVSR A NI+GLG + + 
Sbjct: 400 HCPSCGHELVRIEGE------VALRCINPK-CQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++++     I+  ADIF L+            +   G   V NL  +I K +  SLE 
Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDL------LPLERMGKKKVDNLLLAIEKSKEQSLEH 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F LGIRH+G + ++ LA+ Y +     +   +           LI +  +GD +AQ++
Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SE-IENKKLVFTGTLQKIQRHKAQE 668
           V + +N      +E L  +      +  K            K +V TG L+++ R++A E
Sbjct: 553 VTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIEGHPDFSGKTIVLTGKLEQMTRNEASE 612

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++   GA V+  +++ TDI+I G + GSKL KA++ G +I  E  F+ 
Sbjct: 613 WLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFIE 660


>gi|114776845|ref|ZP_01451888.1| DNA ligase, NAD-dependent [Mariprofundus ferrooxydans PV-1]
 gi|114552931|gb|EAU55362.1| DNA ligase, NAD-dependent [Mariprofundus ferrooxydans PV-1]
          Length = 670

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 244/716 (34%), Positives = 380/716 (53%), Gaps = 52/716 (7%)

Query: 12  LSIEQ-ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ++ +      +  L  ++  H+  YY    P+I D+EYD L R  +++     +L     
Sbjct: 1   MTEKATLTARIEHLRSQLREHNYRYYILDAPVISDAEYDRLLRELESLEA---ELGEPVP 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P   +G   +      TH    LSL   ++  ++  F+ RI          ++ F +
Sbjct: 58  ADSPTRTVGAPPSQVFTTRTHGEALLSLANAFSAGEVEAFVRRIGETL---PATTLSFIV 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIE 186
           EPK+DG  + +RYE+G    AA RGDG +GEDV+  +R I  IP  L        P ++E
Sbjct: 115 EPKVDGLAVNLRYEQGSLTIAATRGDGTTGEDVTDNVRTIGDIPWQLKQVDGIELPTVLE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGE+Y+S+  F ALN    A G +P+ANPRNAA+G LR+L+     +R L FF +G G 
Sbjct: 175 VRGEIYMSREAFAALNARQDAEGAQPFANPRNAAAGSLRQLDARVTASRRLGFFAYGAGL 234

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                A  Q ++L+++   GF        A+   G+++ Y +++  R  +PY+IDG+VYK
Sbjct: 235 GGRAIASSQSQLLERLAGFGF-AVQKTACADDLEGLLATYQQLQQQRPDMPYEIDGVVYK 293

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +DEF+LQ ++G  ARSPRW I+HKF  ++ +T + DI  Q+GRTG++TPVA +EPV +GG
Sbjct: 294 LDEFALQDRMGAVARSPRWAIAHKFPAEEVTTTVKDIIWQVGRTGVITPVADMEPVAVGG 353

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++ ATLHN D +K            + +  G RV+V+RAG+VIP+VV  +  +    A
Sbjct: 354 VVVSRATLHNIDELKR-----------KQVYAGARVIVRRAGDVIPEVVRAVDVD--AQA 400

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                P+ CP+C + + R           A RC+GGL+CSAQ  ERL+HFVSR A +IEG
Sbjct: 401 MMPKAPAQCPVCGASLFRLEGE------VAIRCSGGLSCSAQLTERLRHFVSRGAMDIEG 454

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G + +                 DI  L      S  +     G G+  +TNL  SI + 
Sbjct: 455 MGDKLIARLVDEG-------CLNDIADLYEFDYASLHEW---QGMGEKKITNLQLSIERS 504

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   L RF+ +LGIRHVG+  A +LA ++   +   Q           D  +L+ VP VG
Sbjct: 505 KQRPLARFLHALGIRHVGSATAAALATHFADLELLMQA----------DEEALLAVPDVG 554

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +A +I+ F++   N   ++ LL          ++     +  K +V TG+   I+R  
Sbjct: 555 PEVAGSILSFFREQHNRDVIDRLLAAGVTPEAPQQQQHDHPLAGKTVVLTGSFVAIKRRT 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           AQE +  LG   S  +S++TD++I G+  GSKL KA++LG+++ +E Q L  L  +
Sbjct: 615 AQEQLRALGVRPSGSVSKQTDLVIAGEKAGSKLTKARELGIEVADEAQLLSWLNWH 670


>gi|15903068|ref|NP_358618.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae R6]
 gi|116516470|ref|YP_816476.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae D39]
 gi|81449679|sp|Q8DPS9|DNLJ_STRR6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|122278638|sp|Q04KH2|DNLJ_STRP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|15458641|gb|AAK99828.1| DNA ligase [Streptococcus pneumoniae R6]
 gi|116077046|gb|ABJ54766.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae D39]
          Length = 652

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 213/700 (30%), Positives = 354/700 (50%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q + L
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ LQ            + G  + S   LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +Y+ S +N  Q           D   +  +  +G +IA+++  ++  
Sbjct: 503 IRHVGSKASQLLLQYFHSIENLYQA----------DSEEVASIESLGGVIAKSLQTYFAA 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   +  L +       +       + +    +V TG L++++R +A+  +  LGA V
Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|33864448|ref|NP_896008.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus str. MIT
           9313]
 gi|81576658|sp|Q7V3Z9|DNLJ_PROMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33641228|emb|CAE22358.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9313]
          Length = 696

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 214/734 (29%), Positives = 352/734 (47%), Gaps = 65/734 (8%)

Query: 12  LSIEQAR--KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           ++       K  + L Q ++     YY    P + D+ YD L R    +      L    
Sbjct: 1   MTPTSITPPKRAAELRQLLNQAAHSYYVLDTPTMEDAVYDRLYRELLNLEAKDSSLL--- 57

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ-----KKDDN 124
            P+ P  +IGG        V H IP LSL+  +N+++L  +  R+ +        K    
Sbjct: 58  TPDSPTQRIGGAPAQGFASVQHRIPLLSLDNAFNVDELTGWYVRLAKLLGHQTNPKTPQP 117

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-E 183
            +    E KIDG  + + YE G  + AA RGDG +GE+++A +R I +IP  L L  P  
Sbjct: 118 DLSMVGELKIDGNALALSYEHGVLIRAATRGDGANGEEITANVRTIASIPLRLQLVHPPA 177

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHG 242
            +EVRGE +I  + F  +N      G   +ANPRNA +G LR+L+P    +R L+FF + 
Sbjct: 178 WLEVRGEAFIPNSTFADINTARGKRGDVAFANPRNACAGTLRQLDPKVVASRQLDFFAYT 237

Query: 243 LGKTSEIF--------AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           L                  Q+  LQ ++ +GF VN           + +++      R  
Sbjct: 238 LHLPDNWQAKAHDPARPMNQWAALQWLQAIGFKVNPNTALLADLTAVENFFKLWDEDRHQ 297

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LPY  DG+V K+++  LQ+  G   ++PRW I+ K+A ++A ++LL +  Q+GRTG +TP
Sbjct: 298 LPYATDGVVVKLNDLQLQETAGFTQKAPRWAIALKYAAEEAPSKLLRLTCQVGRTGAVTP 357

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA  E + + G  ++ ATLHN + +  L           D+  GD ++V++AGE+IP+V+
Sbjct: 358 VAEFEAIPLAGTSVSRATLHNANRVSEL-----------DLHSGDTIVVRKAGEIIPEVI 406

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
            ++   R   AQ    P  CP C+S +VR+ +       AA RC    +C A     L+H
Sbjct: 407 GVLRELRPAGAQTLKLPHICPECRSDLVREEDE------AATRCVNS-SCPAILRGTLRH 459

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           +VS+ A +++GLG + ++           ++  AD++ L+     S          G  S
Sbjct: 460 WVSKGALDVDGLGSKLIEQLVNR----GLVQSIADLYALEASLLASM------DRMGSKS 509

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             NL  ++   ++    + ++ LGI HVG   A++LAK + S    A             
Sbjct: 510 TANLITALQASKSKPWHKQLYGLGIHHVGEVNAKALAKKFPSAATLATAACK-------A 562

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--------- 645
              +  V  VG+ IAQ++ +++  P N   +  L K++  S+  +E  ++          
Sbjct: 563 PEQITSVFGVGNEIAQSLQQWFATPANQQLLAKL-KQLGISLEANEDELAHDTDQNQRTV 621

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +E +  V TGTL  + R +AQ  +   G  V+  +S+ T  ++ G   GSKL KA++L 
Sbjct: 622 SLEGQTFVLTGTLPTLSRSEAQALIEASGGKVNNSVSKNTSYVVAGVAAGSKLNKAEKLE 681

Query: 706 VKIMNEEQFLFLLQ 719
           V ++N+E+ L LL 
Sbjct: 682 VTVLNQEELLKLLA 695


>gi|303254175|ref|ZP_07340287.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae BS455]
 gi|302598846|gb|EFL65880.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae BS455]
          Length = 652

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 211/700 (30%), Positives = 355/700 (50%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+PD   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDCLYRELVELETAYPDQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELEAFDARVRKEVAHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  +    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILLAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q ++L
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A     I  +  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 KHLEQLGFVVNPKRILAENIDEIWDFIQEVGEERDNLPYDIDGVVIKVNDLASQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRISEEKL-DIPTNCPSCD 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ L+            + G  + S + LY +I   +  S E+ +F LG
Sbjct: 450 -AADLVKDVADIYRLKEEDF------LLLEGVKEKSASKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +++ S +N AQ           D   +  +  +G +IA+++  ++  
Sbjct: 503 IRHVGSKASQLLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   +  L +       +       + +    +V TG L++++R +A+  +  LGA V
Sbjct: 553 EGSEILLRELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++ G + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL 652


>gi|319441119|ref|ZP_07990275.1| NAD-dependent DNA ligase LigA [Corynebacterium variabile DSM 44702]
          Length = 702

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 209/722 (28%), Positives = 343/722 (47%), Gaps = 51/722 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S +   +  S+L  EI +H D YY Y +P+I D+E+D + R   ++    P++       
Sbjct: 24  SPDDPAERWSALAAEIRHHRDLYY-YREPVITDAEFDTMMRELQSLEAEHPEVVTGP--- 79

Query: 73  GPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P  ++      S    V H    LSL+ +++  +L++++ R           S  +  E
Sbjct: 80  SPTTEVAQPPVNSPFRNVAHREQMLSLDNVFDGGELKEWLDRT---------PSETYLTE 130

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEV 187
            KIDG  I + Y  G+   A  RGDG +GED++   R I  IP  LS      +P ++E+
Sbjct: 131 LKIDGASIDLLYLDGRLETALTRGDGVTGEDITHNARTISDIPDRLSGTEEFPVPAVVEI 190

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT 246
           RGE++I+  DF  +N +  A G+K +ANPRNAA+G +R+ NP +   R L    HGLG  
Sbjct: 191 RGEIFITVEDFATMNADRQAEGKKMFANPRNAAAGAMRQKNPAETAKRPLKLICHGLGAR 250

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                  Q++  + +   G PV+   +Q ++   +++        R    +++DGLV KV
Sbjct: 251 EGFEPASQHDAYRAIEAWGLPVSPYTKQVHSAEEVIAQVGYWGEHRHDATHEMDGLVVKV 310

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D    Q+ LG  +R+PRW I++K+  ++A T +  I I +GRTG  TP A + P  + G+
Sbjct: 311 DSLDEQEDLGATSRAPRWAIAYKYPPEEAMTTVESIRIGMGRTGRATPFAVMSPTPVAGS 370

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ ATLHN                 + IR+GDRV++++AGEVIP+V+  + + R    +
Sbjct: 371 TVSMATLHNPTEAHR-----------KGIRLGDRVMIRKAGEVIPEVLGPVEDVRDGSER 419

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F F S CP C + +       T +  A  RC     C  Q   RL +   R AF+I+ L
Sbjct: 420 EFVFSSVCPECGTPLA-----PTKEGDADWRCPNTRYCPGQLQNRLNYLAGRGAFDIDAL 474

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++           +  +     +F+L     TST       G  +     L D++ + +
Sbjct: 475 GERAASDLI----ASGVLPDEGRLFSLSADDLTSTNAYTTKAGKLNRPGELLLDNLEEAK 530

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            + L R I +L IRHVG   A++LA    S     +               +  +  VG 
Sbjct: 531 QVDLWRVITALSIRHVGPTAAKALAATLQSIPAIDKA----------SVEEMAEIDGVGG 580

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRH 664
           IIAQ++ +++    +   V+A            E +      +    +V TG+L+   R 
Sbjct: 581 IIAQSVKDWFAVDWHREIVDAWADAGVRMEQIVEASDLPEQTLAGLTVVVTGSLENFDRT 640

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            A+E V   G   +  +S+ TD ++ G+  GSKL KA+ LGV +++E  F  LL +    
Sbjct: 641 SAKEAVESRGGKAAGSVSKNTDFLVAGEKAGSKLTKAEDLGVPVLDEAGFEKLLAEGPDA 700

Query: 725 LR 726
           +R
Sbjct: 701 VR 702


>gi|7674019|sp|Q9ZHI0|DNLJ_THEFI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]; AltName: Full=Tfi DNA ligase
          Length = 670

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 241/718 (33%), Positives = 380/718 (52%), Gaps = 52/718 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+AR+ ++ L   I YH+  YY  + P I D+EYD L R    +   FP+      P
Sbjct: 1   MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFK---SP 57

Query: 72  NGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G      +   V H     SL+  +  E++  F  R+ R   +K      +T+
Sbjct: 58  DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLERALGRK--RPFLYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  V+ A RGDG  GE+V+  +  IPTIPR L    P+ +EVRGE
Sbjct: 116 EHKVDGLSVNLYYEEGVLVFGATRGDGEVGEEVTQNLLTIPTIPRRLKGV-PDRLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+    FL LN+E+   G K + NPRNAA+G LR+ +P     R L    + LG   E 
Sbjct: 175 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLEE 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K QYE+L  ++  GFPV +G  +A    G+   Y    + R  LP++ DG+V K+D+
Sbjct: 235 SGLKSQYELLLWLKEKGFPVEHGYEKALGAEGVEEVYRRFLAQRHALPFEADGVVVKLDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +L ++LG  AR+PR+ +++KF  ++  TRLLD+  Q+GRTG +TPV  LEPV I G+ +
Sbjct: 295 LALWRELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGSEV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++   R  + +P 
Sbjct: 355 SRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGEERPI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P  CP C  R+V++           HRC   L C A++ E ++H+ SR A +IEGLG+
Sbjct: 404 RWPETCPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIEGLGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   +       +R  AD++ L++           +   G+ S  NL   I + ++ 
Sbjct: 455 KLIERLLEK----GLVRDVADLYHLRKEDLLG------LERMGEKSAQNLLRQIEESKHR 504

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            LER +++LG+  VG  +AR+LA+ + +     +     +    +               
Sbjct: 505 GLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELLEVEEVGEL----------T 554

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+AI+E  ++P     V  L +       + E  VS  +     V TG L +  R + + 
Sbjct: 555 ARAILETLKDPAFRDLVRRLKEAGVSMESKEE--VSDLLSGLTFVLTGELSR-PREEVKA 611

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV ++ EE+F   L++    + 
Sbjct: 612 LLQRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKEKGAPVP 669


>gi|237785838|ref|YP_002906543.1| NAD-dependent DNA ligase LigA [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758750|gb|ACR18000.1| DNA ligase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 686

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 213/722 (29%), Positives = 357/722 (49%), Gaps = 58/722 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S +  + + +SL  ++ +H D YY  S+P+I D+E+D L +    +    P+LA++   
Sbjct: 1   MSTD-LQAQWNSLAADVRHHRDLYYN-SEPVISDAEFDHLFKTLQDLEADHPELAKNG-- 56

Query: 72  NGPLNKIGGEMNL---------SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
             P  ++G  +           +   V H     SL+ +++  +L +++ R         
Sbjct: 57  -SPTEEVGAPVPTPTETSSAEVTFAPVRHIERLYSLDNVFSKSELLEWLHRT-------- 107

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----S 178
             +  +  E KIDG  I + Y  G+ V AA RGDG +GED++   R I  IP+ +     
Sbjct: 108 -PAPTYLTELKIDGLSIDLVYRDGELVSAATRGDGLTGEDITPNARTISDIPQTISPTDE 166

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLN 237
             +PE++EVRGEV+I   +F  +N + +  GRKP+ANPRNAA+G LR+ NP +   R L+
Sbjct: 167 YPVPELVEVRGEVFIGVEEFAVINADRVEQGRKPFANPRNAAAGSLRQKNPAETAKRNLS 226

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
              HG+G         Q++    +   GF V+   ++  +   +++        R    +
Sbjct: 227 MICHGIGAREGWEPSTQHDAYTALAAWGFRVSPYTKRVTSADEVIAQMEYWGEHRHDATH 286

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           ++DGLV KVD+ + Q+ LGE +R+PRW I++K+  ++  T L DI I IGRTG  T  A 
Sbjct: 287 EMDGLVVKVDDLAEQEDLGETSRAPRWAIAYKYPPEEVVTTLRDIRIGIGRTGRATTYAV 346

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           L+PV + G+ +  ATLHN   +             + + +GDRV +++AGEVIP+V+  +
Sbjct: 347 LDPVLVAGSTVARATLHNPSEVH-----------DKGVLIGDRVTIRKAGEVIPEVLGPV 395

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            + R    +PF F + CP C + +V+          A  RC     C  Q L R+ +   
Sbjct: 396 ADARDGSEKPFVFSTVCPECGTPLVQ-----AKADDADWRCPNTQGCPGQLLARMTYLAG 450

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R AF+I+ LG   +    +S     ++   +++F L       T+      G  + +   
Sbjct: 451 RSAFDIDALGVSGIQDLIRS----GALTNESELFDLDESHLRLTSVFTTKAGKINATGKA 506

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L  ++ + ++  L R I +L IRHVG   AR+LA  Y S +                   
Sbjct: 507 LLKNLEEAKSTELWRVIVALSIRHVGPTAARALATKYGSLEAIRSASE----------EE 556

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
           L R+  VG IIA ++  ++    +I  V+A            ++     +E   +V TGT
Sbjct: 557 LARIDGVGSIIAASLCSWFAVDWHIKIVDAWAAAGVRMEDDKQQAQPQTLEGTTVVVTGT 616

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L+   R  A+E +   G   +  +S+KT+ ++VG N GSK  KA+ LG++I++E+ F  L
Sbjct: 617 LEDFTRDSAKEAIISRGGRAAGSVSKKTNYVVVGANAGSKETKARDLGLRILDEDGFKEL 676

Query: 718 LQ 719
           L+
Sbjct: 677 LE 678


>gi|328957928|ref|YP_004375314.1| NAD-dependent DNA ligase LigA [Carnobacterium sp. 17-4]
 gi|328674252|gb|AEB30298.1| NAD-dependent DNA ligase LigA [Carnobacterium sp. 17-4]
          Length = 645

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 241/691 (34%), Positives = 366/691 (52%), Gaps = 53/691 (7%)

Query: 38  YSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLS 97
              P I D++YD L     A+  AFPDL      + P  +IGG +     KV H +P LS
Sbjct: 2   KDAPSIPDTDYDKLYNELVALEEAFPDLI---SNDSPTQRIGGTILPGFEKVVHEVPMLS 58

Query: 98  LEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157
           L   +N  DL  F  RI +      D    +  E KIDG  +++ YEKGK V AA RGDG
Sbjct: 59  LGNAFNEGDLLDFDRRIKKI----TDQPFSYICELKIDGLAVSLTYEKGKLVRAATRGDG 114

Query: 158 HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPR 217
             GE+V+  IR + ++P  L       IEVRGE Y+ K+ F+ LN E    G   +ANPR
Sbjct: 115 TVGENVTQNIRTVKSVPLRLKNPYS--IEVRGECYMPKDSFIKLNQEREENGEAIFANPR 172

Query: 218 NAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQAN 276
           NAA+G LR L+P +   R LN F++ +G   E+ A  Q + L ++  LG   N+  R   
Sbjct: 173 NAAAGGLRNLDPKETAKRNLNTFLYTIGDFGELTAVSQEDALHQLDELGLRTNHDRRVFQ 232

Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336
           T   + +Y  E +  R+ LPY+IDG+V KV+EF++Q+++G   ++PRW I++KF  ++A 
Sbjct: 233 TIEEVWAYTQEFQEKRTALPYEIDGIVIKVNEFAVQEEVGFTVKAPRWAIAYKFPAEEAH 292

Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396
           T + DI+  +GRTG++TP A ++PV + G  +  A+LHNED I             RDIR
Sbjct: 293 TVIRDIEWSVGRTGVVTPTAIMDPVQLAGTTVQRASLHNEDLIH-----------ERDIR 341

Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456
           + D V+V +AG++IP+V  +I++ER  D+QP++ P+ CP C S ++            A 
Sbjct: 342 LLDTVVVHKAGDIIPEVTRVILDERPEDSQPYAIPTHCPACDSDLIHLEEE------VAL 395

Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516
           RC     C AQ  E L HFVSR+A NI+GLG + L   F+ +     +   AD++TL   
Sbjct: 396 RCMNPK-CPAQITEGLSHFVSRNAMNIDGLGIRVLMQMFEKD----MVHDVADLYTLTFD 450

Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
           Q  +      +    + S  NL ++I+  R+ SLER +F LGIRHVGA+ A+ +A+ + +
Sbjct: 451 QLVT------LDKIKEKSANNLLNAIDASRSNSLERLLFGLGIRHVGAKAAKLIAERFET 504

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS- 635
            +   Q   ++I                   IA+++V ++  P     ++ L        
Sbjct: 505 MEAVQQAEKDMIISIEGIGEI----------IAESVVAYFSLPEVNELIQELKNSQVNMN 554

Query: 636 ----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                      V S    K +V TG L    R +A+E +  LG  V+  +S+KTD+++ G
Sbjct: 555 YLGKKKVEVATVDSYFNGKTVVLTGKLTHFTREEAKERIENLGGNVTGSVSKKTDLVVAG 614

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +  GSKL KA+ L + + +E+Q L  L+   
Sbjct: 615 EEAGSKLAKAESLNILVWDEDQLLETLEGEE 645


>gi|332523413|ref|ZP_08399665.1| DNA ligase (NAD+) [Streptococcus porcinus str. Jelinkova 176]
 gi|332314677|gb|EGJ27662.1| DNA ligase (NAD+) [Streptococcus porcinus str. Jelinkova 176]
          Length = 652

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 226/701 (32%), Positives = 361/701 (51%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K +  L   ++ +   YY    P + D EYD L     A+   +P+  +    + P   
Sbjct: 2   EKRIIELTNLLNQYRQEYYTNDNPTVSDQEYDKLYHELLALETEYPEFIQK---DSPTQG 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  RI       +   + +  E KIDG 
Sbjct: 59  VGGLILSGFEKYQHPYPLYSLQDAFSQEELVAFDRRIK-----LEFPIVTYVAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y+ GK V  A RGDG  GE+++  I+ I  IP++L   I   I VRGE Y+SK+ 
Sbjct: 114 SISLNYKGGKLVTGATRGDGSVGENITENIKKIKDIPQILKEPI--DITVRGEAYMSKHS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N E    G   +ANPRNAA+G LR+L+ + +    N       + S      Q  +
Sbjct: 172 FQMINVERQENGETEFANPRNAAAGTLRQLDTSIV-GKRNLASFLYQEASPSQESTQVAV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+  LGF VNN    +++   I  +  E+++ R+ LPYDIDG+V KV + ++Q++LG 
Sbjct: 231 LDKLSYLGFSVNNHRMVSSSMEDIWQFIQEIEADRAQLPYDIDGIVIKVADLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  IGRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTIGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++ ++R  D +P   P+ CP C
Sbjct: 351 YI-----------AQKDIRIGDTVIVYKAGDIIPAVLRVVTDKR-KDQEPILIPNLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           QS +    +        A RC   L C +     L+HF SR+A NI GLG   ++  F  
Sbjct: 399 QSSLTHLEDE------VALRCINPL-CPSLIQRSLEHFASRNAMNIAGLGPAVVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  I   ADI+ L R Q  S      + G  + S   L  +I   +  S E+ +F L
Sbjct: 450 --TAQLIHDVADIYRLSREQLLS------LEGIKEKSADKLLSAIADSKEKSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG + +R L + +   +   Q           D  ++ ++  +G +IA +I +++ 
Sbjct: 502 GIRHVGEKASRLLLETFGDIETVMQS----------DEEAIAQIDGLGHVIANSIAQYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            P     +  L  +           + S+ +    +V TG L+++ R +A+  +  LGA 
Sbjct: 552 KPEAQQLISELKSQGLNLSYLGQRVDQSAPLYGLTVVLTGKLEEMGRSEAKTKLENLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V++ +S+KTD+++ G + GSKL+KA+QLG++I +E+  L L
Sbjct: 612 VTSSVSKKTDVVLAGSDSGSKLDKAKQLGIRIEDEQWLLDL 652


>gi|148986045|ref|ZP_01819066.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP3-BS71]
 gi|147921879|gb|EDK73005.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP3-BS71]
 gi|301800082|emb|CBW32679.1| DNA ligase [Streptococcus pneumoniae OXC141]
          Length = 652

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 213/700 (30%), Positives = 354/700 (50%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q + L
Sbjct: 173 DQVNQVRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 KYLEQLGFVVNPKRILAENIDKIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ LQ            + G  + S   LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +Y+ S +N  Q           D   +  +  +G +IA+++  ++  
Sbjct: 503 IRHVGSKASQLLLQYFHSIENLYQA----------DSEEVASIESLGGVIAKSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   +  L +       +       + +    +V TG L++++R +A+  +  LGA V
Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|325690880|gb|EGD32881.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK115]
          Length = 652

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 219/701 (31%), Positives = 357/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  R+ +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRVRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N      G   +ANPRNAA+G LR+L+   +    N       + S   A  Q E+
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQADSQEEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+  LGF VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++LG 
Sbjct: 231 LNKLADLGFSVNPTHILADSIEAVWKFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  +      PS CP C
Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EIPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           +S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  A I+ L          +  +  F + S   LY +I   +  S ER +F L
Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELGNFKEKSANKLYTAIQASKENSAERLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + +      +Q               +  +  +G +IAQ++  +++
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +  L +          +    + +    +V TG LQK+ R++A+E +  LGA 
Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 612 VSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|113954059|ref|YP_731994.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9311]
 gi|122945488|sp|Q0I6C8|DNLJ_SYNS3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|113881410|gb|ABI46368.1| DNA ligase, NAD-dependent [Synechococcus sp. CC9311]
          Length = 697

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 211/717 (29%), Positives = 351/717 (48%), Gaps = 55/717 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +    L + ++     YY    P + D  YD L R    + H    L      + P  ++
Sbjct: 15  ERAEELRRLLNRAAHAYYVLDAPDMEDPVYDQLYRELQDLEHQDSTLV---SADSPTQRV 71

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-----DNSIFFTLEPK 133
           GG +      V+H I   SL+  +N ++L  + +R+ +   +         ++    E K
Sbjct: 72  GGRLADGFRSVSHRISLFSLDNAFNRDELHGWYSRLLKALDRTPAAGSPPPTLPMVGELK 131

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVY 192
           IDG  + + YE G  V AA RGDG  GE+++A +R I +IP  L    +P  +EVRGE +
Sbjct: 132 IDGNALALSYENGVLVRAATRGDGEQGEEITANVRTISSIPLRLHLEPVPAWVEVRGEAF 191

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF- 250
           I    F A+N+E ++     +ANPRNA +G LR+L+P+    R L+FF + L    E   
Sbjct: 192 IPDATFHAINNERLSRDESLFANPRNACAGTLRQLDPSVVAARRLDFFAYTLHLPDEWQE 251

Query: 251 --AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ LQ +   GF VN           +  +++   + R  L Y  DG+V K+++
Sbjct: 252 RRPLTQWDALQWLGDAGFKVNPNAGLLPDLQAVEQFFDTWDTERRQLDYATDGVVVKLND 311

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             LQ   G   ++PRW I+ K+  ++A +++L I  Q+GRTG++TPVA  EPV + G  +
Sbjct: 312 LRLQDAAGFTQKAPRWAIALKYPAEEAPSKILRISYQVGRTGVITPVAEFEPVGLAGTSV 371

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN D +  L           D+  GD ++V++AGE+IP+VV ++   R   AQP 
Sbjct: 372 SRASLHNADRLVEL-----------DLHDGDTIVVRKAGEIIPEVVRVLPELRPALAQPL 420

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
                CP C S +VR+ N       +A RC    +C A     L+H+VS+ A +I+GLG 
Sbjct: 421 EITKTCPACGSTLVRESNE------SATRCINS-SCPAILRGALRHWVSKGAMDIDGLGS 473

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++           ++  AD++ L          + ++   G  S  NL  ++N  R+ 
Sbjct: 474 KLIEQLVDR----GLVQSIADLYRL------DMALLGSLERMGSKSAENLIQALNASRSQ 523

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              + ++ LGI HVG   A+++   + +  +  Q              S+  +  VG  I
Sbjct: 524 GWAKQLYGLGIHHVGDVNAKAITTAFPNADSLNQA-------ACHAPESITAIFGVGKEI 576

Query: 609 AQAIVEFYQNPRNICAVEALLKEV-SPSIGRHEKN------VSSEIENKKLVFTGTLQKI 661
           AQ++ +++ +P N   ++ L     S S+   E++       +  +     V TGTL  +
Sbjct: 577 AQSLQQWFSSPANQRLLDELRSLGFSLSLNEEEQSRATTAAANHHLTGSTFVLTGTLPTL 636

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R +A+E +   G  VS  +S+KT  ++ G+  GSKL KAQ+LGV I++EE    +L
Sbjct: 637 TRSQAKEQIEACGGKVSGSVSKKTSYLVAGEEAGSKLTKAQELGVSILDEEALQNML 693


>gi|169834268|ref|YP_001694538.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae
           Hungary19A-6]
 gi|254781426|sp|B1IBQ3|DNLJ_STRPI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|168996770|gb|ACA37382.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae Hungary19A-6]
          Length = 652

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 213/700 (30%), Positives = 354/700 (50%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q + L
Sbjct: 173 DQVNQVRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++   Q++LG  
Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLVSQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ LQ            + G  + S   LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +Y+ S +N +Q           D   +  +  +G +IA+++  ++  
Sbjct: 503 IRHVGSKASQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFAA 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   +  L +       +       + +    +V TG L++++R +A+  +  LGA V
Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|322387936|ref|ZP_08061543.1| NAD-dependent DNA ligase LigA [Streptococcus infantis ATCC 700779]
 gi|321141209|gb|EFX36707.1| NAD-dependent DNA ligase LigA [Streptococcus infantis ATCC 700779]
          Length = 652

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 214/700 (30%), Positives = 360/700 (51%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L + ++ +   YY    P + DSEYD L R    +  A+P+      P+ P +++
Sbjct: 3   ERMKELVELLNRYATEYYTSDNPSVSDSEYDRLYRELVELEIAYPEQVL---PDSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +       + + +  E KIDG  
Sbjct: 60  GGKILDGFKKYSHQYPLYSLQDAFSREELDAFDARVRKEL-----DDVTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE+G F   A RGDG  GE+++  ++ +  IP  LS  I   I VRGE Y+ ++ F
Sbjct: 115 ISLTYEQGIFAAGATRGDGSVGENITENLKRVKDIPLSLSEKI--DITVRGECYMPRDSF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q ++L
Sbjct: 173 NQVNLARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             +  LGF VN     A++   +  +  E+   R  LPYDIDG+V KV++ + Q+QLG  
Sbjct: 232 NHLEQLGFVVNPRRLLAHSMDEVWEFIQEVGQERDQLPYDIDGVVIKVNDLTGQEQLGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAKLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C+
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-GIPTNCPSCE 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S+++   +        A RC     C AQ  E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SKLLHFEDE------VALRCINPQ-CPAQIKEGLIHFASRDAMNISGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ L             + G  + S   LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLTVEDF------LVLDGIKEKSAQKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG++ ++ L +++ S ++ AQ           +   +  +  +G++IAQ++  +++ 
Sbjct: 503 IRHVGSKASQLLLQHFHSIESLAQA----------NPEEVASIESLGNVIAQSLQSYFET 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
                 +  L +       +     V + +    +V TG L+++ R +A+  +  LGA V
Sbjct: 553 EGAKILLSELKELGVNLDYKGQVVAVDAALSGLTVVLTGKLERLTRSEAKSKLENLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++ G   GSKL+KAQ+LG++I +E     L
Sbjct: 613 TGSVSKKTDLVVAGAEAGSKLQKAQELGIEIRDEAWLEGL 652


>gi|168486469|ref|ZP_02710977.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1087-00]
 gi|183570508|gb|EDT91036.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1087-00]
          Length = 652

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 213/700 (30%), Positives = 356/700 (50%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q + L
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ LQ            + G  + S   LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG+++++ L +Y+ S +N +Q           D   +  +  +G +IA+++  ++  
Sbjct: 503 IRHVGSKVSQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   +  L +       +       + +    +V TG L++++R +A+  +  LGA V
Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSISKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|149012887|ref|ZP_01833800.1| DNA ligase [Streptococcus pneumoniae SP19-BS75]
 gi|182684133|ref|YP_001835880.1| DNA ligase [Streptococcus pneumoniae CGSP14]
 gi|254781428|sp|B2IPZ1|DNLJ_STRPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147763176|gb|EDK70116.1| DNA ligase [Streptococcus pneumoniae SP19-BS75]
 gi|182629467|gb|ACB90415.1| DNA ligase [Streptococcus pneumoniae CGSP14]
 gi|301801994|emb|CBW34723.1| DNA ligase [Streptococcus pneumoniae INV200]
          Length = 652

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 213/700 (30%), Positives = 356/700 (50%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q + L
Sbjct: 173 DQVNQVRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ LQ            + G  + S   LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG+++++ L +Y+ S +N +Q           D   +  +  +G +IA+++  ++  
Sbjct: 503 IRHVGSKVSQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   +  L +       +       + +    +V TG L++++R +A+  +  LGA V
Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSISKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|125718295|ref|YP_001035428.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK36]
 gi|166216249|sp|A3CNX3|DNLJ_STRSV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|125498212|gb|ABN44878.1| DNA ligase, putative [Streptococcus sanguinis SK36]
          Length = 652

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 217/701 (30%), Positives = 356/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  R+ +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRVRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYENGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N      G   +ANPRNAA+G LR+L+   +    N       + S      Q E+
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQVGSQEEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+  L F VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++LG 
Sbjct: 231 LNKLADLDFSVNPTHILADSIESVWEFIEKIAEERDSLPYEIDGIVIKVNDLAVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  +      PS CP C
Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEAL-EVPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           +S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  A I+ L      +   +  +  F + S   LY +I   +  S ER +F L
Sbjct: 452 N----LVKDVAGIYRL------TIENLLELENFKEKSANKLYTAIQASKKNSAERLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + +      +Q               +  +  +G +IAQ++  +++
Sbjct: 502 GIRHVGSKASRILLEKFHDIPRLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +  L +          +    + +    +V TG LQK+ R++A+E +  LGA 
Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 612 VSGSVSKKTDLVVAGADAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|99081239|ref|YP_613393.1| DNA ligase, NAD-dependent [Ruegeria sp. TM1040]
 gi|122984289|sp|Q1GGT5|DNLJ_SILST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|99037519|gb|ABF64131.1| DNA ligase NAD-dependent [Ruegeria sp. TM1040]
          Length = 739

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 292/753 (38%), Positives = 427/753 (56%), Gaps = 59/753 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    AR E  +L+ +I   D  Y+Q   P + D++YD LKRR  A+A AFP LA+    
Sbjct: 1   MDEADARAEFEALQTKIEKADHDYHQKDAPTLSDADYDRLKRRYLALADAFPILAKDGTR 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
              +  +G        KVTH+   +SL   +  +D+  F   + R+     +  + FT E
Sbjct: 61  ---VASVGAPAASGFGKVTHAQRMMSLGNAFEDQDVEDFAVGLRRYLGLSSEAPLAFTAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++RYE GK V AA RGDG  GE+V+   R I  IP+ +S   PE++EVRGEV
Sbjct: 118 PKIDGLSLSLRYEAGKLVQAATRGDGAVGENVTENARTISDIPQEISGA-PEVLEVRGEV 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+S  DF ALN      G K +ANPRNAA+G LR+L+      R L FF +  G+ SE  
Sbjct: 177 YMSHADFEALNARHAETGGKIFANPRNAAAGSLRQLDAEITRARPLRFFAYSWGELSEPL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A+ Q + ++++  LGF  N   R       ++++Y+ ++  R+ L YDIDG+VYKV++ S
Sbjct: 237 AETQIDAIERLASLGFQTNPLTRCCEQISELLAHYHAIEEQRADLGYDIDGVVYKVNDLS 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ++LG R+ +PRW I+HKF  + A T L  IDIQ+GRTG L+PVARL PV +GG +++N
Sbjct: 297 LQERLGFRSTTPRWAIAHKFPAELAWTHLEGIDIQVGRTGALSPVARLHPVTVGGVVVSN 356

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNEDYI GLD+ G  +RGG+DIRVGD V + RAG+VIPKV D+ ++ R    + ++F
Sbjct: 357 ATLHNEDYIAGLDSKGAPIRGGKDIRVGDWVQIYRAGDVIPKVADVDLSRRPEGTERYAF 416

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S  VR+         A  RC+GGL C AQ +E+LKHFVSR AF+IEGLG +Q
Sbjct: 417 PTRCPRCDSPAVREEG------DAVRRCSGGLICPAQAVEKLKHFVSRAAFDIEGLGAKQ 470

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F         ++ PADIF LQ+R  +   +++N  G+G+ S + L+ +I  +R I  
Sbjct: 471 VEQFHSD----GWVKEPADIFELQQRYGSGLQQLKNREGWGEKSASALFAAIEDKRRIEF 526

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQ-------------------------------- 578
            R IF LGIRHVG   A+ LA ++ ++                                 
Sbjct: 527 ARLIFGLGIRHVGEVAAKDLALHFRTWSALAEAADLARAAALAHRAADEAEIVERQEAQA 586

Query: 579 -----NFAQEINNIIA------HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
                  ++  N  +A       +   W  LI V  +G  +A ++ + + NP    A + 
Sbjct: 587 SARRAKISEARNAAVATCAVAPDSQAAWDDLISVDGLGPTVALSLSDAFANPEERAAFDR 646

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           L+  +   I        S +  K +VFTGTL+K+ R +A+     LGA VS  +S+KTDI
Sbjct: 647 LIAHLEI-IEPDAPADDSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSKKTDI 705

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ G   GSK  KA +LG++ ++E+ +L L+ Q
Sbjct: 706 LVAGPGAGSKAAKAAELGIQTLDEDGWLDLIGQ 738


>gi|323351288|ref|ZP_08086944.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis VMC66]
 gi|322122512|gb|EFX94223.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis VMC66]
          Length = 652

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 215/701 (30%), Positives = 354/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  R+ +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRVRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYENGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N      G   +ANPRNAA+G LR+L+   +    N       + S   A  Q  +
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQADSQEAV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+  L F VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++LG 
Sbjct: 231 LNKLADLDFSVNPTHILADSIDSVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  +      PS CP C
Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EIPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           +S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNINGLGPAVVEKLFAQ 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  A I+ L          +  +  F + S   LY +I   +  S ER +F L
Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + +      +Q               +  +  +G +IAQ++  +++
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +  L +          +    + +    +V TG LQK+ R++A+E +  LGA 
Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VS  +S+KT++++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 612 VSGSVSKKTNLVVAGADAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|282851211|ref|ZP_06260576.1| DNA ligase (NAD(+)) [Lactobacillus gasseri 224-1]
 gi|282557179|gb|EFB62776.1| DNA ligase (NAD(+)) [Lactobacillus gasseri 224-1]
          Length = 668

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 209/715 (29%), Positives = 362/715 (50%), Gaps = 50/715 (6%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L+  QA +++  L +++    + YY    P++ D+ YD   +    +   FPDL  S
Sbjct: 1   MAVLTHNQASQKVDELRKKLDEWAEDYYAKDAPVVEDAVYDKAYQELVELEKQFPDLVTS 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +    ++GGE+   L KV H +P LS+  +++ ++L++F  RI +       + + +
Sbjct: 61  ---DSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLVG----HPVAY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y  GK   A+ RG+G  GEDV+A  + I  IP+ L   +    EVR
Sbjct: 114 NVELKIDGLSLSLEYTAGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPEPL--TTEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN E    G + +ANPRNAA+G LR+L+     +              
Sbjct: 172 GECYMEKEAFAKLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ + +M  L F  N   ++  +   +  + +E  + R+ L Y IDG+V KVD+
Sbjct: 232 KNITSQHQAIDEMNRLDFHTNQTGQRLESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            SLQ +LG   + PRW I++KF  ++  T + +I+  +GRTG++TP A ++PV + G ++
Sbjct: 292 LSLQNELGNTVKVPRWEIAYKFPPEEQETVVKEIEWTVGRTGVVTPTAVMDPVQLAGTVV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A+LHN DY++            + +R+GD V + +AG++IP++  +++N+R  D++P+
Sbjct: 352 SRASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLNKRPKDSEPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG 
Sbjct: 401 QIPNKCPSCGQDLVHLQDE------VALRCINPM-CPAQVEEGIIHFASRGAMNIMGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +            +   AD++ L   Q +       +  F D S+TNL  SI   +  
Sbjct: 454 RIVKQLIDKN----FVNDVADLYHLTNEQLS------QLDHFKDKSITNLLTSIENSKQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S E  +F LGI HVGA+ AR + + Y + +  +Q               L  +  +G+ I
Sbjct: 504 SAELLLFGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIGETI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A+++  ++  P     ++ L              E+   +  + K +V TG L    R +
Sbjct: 554 AESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKLSDFTRSE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             + +  LGA V+  +S+KTD +I G + GSK +KA++L V ++ E++ +  +++
Sbjct: 614 FTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKIEK 668


>gi|122971128|sp|Q14L37|DNLJ_SPICI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110005471|emb|CAK99793.1| dna ligase protein [Spiroplasma citri]
          Length = 667

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 233/713 (32%), Positives = 377/713 (52%), Gaps = 48/713 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ EQA+K    L++++   +  YY    P + D EYD   +   AI   + +L      
Sbjct: 1   MTFEQAKKRSLVLKEQLEKWNYEYYVNDNPSVSDQEYDRALQELIAIEQQYSELITI--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++ G+++    K  H+ P LSL   +N +DL  F  +I  F        I +T E
Sbjct: 58  DSPTQRVSGQISEKFNKYVHTSPMLSLGNAFNYDDLIHFDEQIKEFTAL---PEIEYTCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ Y+    V  A RGDG +GEDV+  I+ I +IP  +       + VRGEV
Sbjct: 115 LKIDGLSISLVYDNHVLVMGATRGDGLTGEDVTINIKQIKSIPLRIDQP---TLIVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+S  +F  +N+E +  G   +ANPRNAA+G LR+L+ T    R LN F++      +  
Sbjct: 172 YLSVEEFNKINEERVKNGEFKFANPRNAAAGTLRQLDSTIVAKRKLNAFLYYYVNALQDG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + QYE LQ++  L F +N   R  +    + +Y  E +  R+ L Y+IDG+V KV+  +
Sbjct: 232 IQSQYEALQRLEQLKFKINPEYRYCSNIAAVWAYIQEYEPKRNQLGYEIDGIVIKVNNLN 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L  ++G  A++P+W I++KF  +   T+LL+I   +GRTG +T  A LEP+ I G ++  
Sbjct: 292 LYNRIGYTAKNPKWAIAYKFPAEVVVTKLLNIFPSVGRTGRITYNAVLEPIRIVGTIVRA 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D+I             RDIR+GD V VK+AG++IP+V++ +   R  +AQ +  
Sbjct: 352 ATLHNADFI-----------TERDIRIGDNVQVKKAGDIIPEVINYVAARRQKNAQKWQE 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
            + CP C S + R              C   + C  +    L+H+ SR+A NIEG+ ++ 
Sbjct: 401 ATHCPECNSLLERVEGE------VDQYCINSV-CPKKITRGLEHYCSRNAMNIEGISEKI 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  FK E     ++  +D++ L++ +     +I  +  FG+ S  N+  SIN  +N SL
Sbjct: 454 IERLFKLE----YLKSFSDLYQLEQYRA----EIIELENFGEKSFENMITSINNSKNNSL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F+LGIRHVG + A+ LA+ + +  N A            +   L  +  +G I+A 
Sbjct: 506 ERLLFALGIRHVGQKTAKLLARQFKTIDNLAA----------MNIEQLSIINDIGPIVAA 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++V+++  P N   +  L +           ++++ + EN + V TG L K  R   +E 
Sbjct: 556 SVVDYFAIPANQQELALLRQNGVKMEYFATNQHLAQKFENYRFVITGVLSK-SREYFKEL 614

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +   G  VS  +S KT  ++ G + G+KL KAQ+L VKI+NEE+F  LL + +
Sbjct: 615 IESYGGQVSESVSAKTTYLLAGTDAGNKLVKAQKLNVKIINEEEFQQLLSKED 667


>gi|239928777|ref|ZP_04685730.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672]
 gi|291437098|ref|ZP_06576488.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672]
 gi|291339993|gb|EFE66949.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672]
          Length = 731

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 217/737 (29%), Positives = 346/737 (46%), Gaps = 62/737 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR++   L ++I  H   YY    P+I D+E+D   R    +     +      P+ 
Sbjct: 13  PAEAREQHVQLAEQIEEHRFRYYVNDAPVISDAEFD---RLLRELEALEEEYPELRTPDS 69

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G        V H    LSL+  +N +DL  +  R+ R   +       F  E K
Sbjct: 70  PTQKVAGSYETEFTAVRHRSRMLSLDNTFNDDDLAAWTERVRRELGE---QEYHFLCELK 126

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YE+G+   AA RGDG +GED++  +R I  +P  L  +  P+++E+RGEVY
Sbjct: 127 VDGLAVNLTYERGRLTRAATRGDGRTGEDITPNVRTIAEVPDRLKGDRVPDLVEIRGEVY 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
                F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G       
Sbjct: 187 FPMEKFEELNRRLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHLVVHGIGALEGFEG 246

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E    ++  G P +   R  +   G+  +       R ++ ++IDG+V K+DE  
Sbjct: 247 MTRLSEAYDLLKSWGLPTSRHNRVVDDLGGVREFIAHYGENRHSVEHEIDGVVVKLDEIR 306

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  AR+PRW I++K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ +  
Sbjct: 307 LQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIRVGVGRTGRVTPYAQVEPVTVAGSEVEF 366

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+D +K            + + +GD V++++AG+VIP+++  + + R    + F  
Sbjct: 367 ATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVM 415

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG--- 487
           P  CP C + +         +     RC    AC AQ  ERL +   R A +IE  G   
Sbjct: 416 PGECPECGTPLRPM-----KEGDVDLRCPNARACPAQLRERLFYLAGRKALDIEHFGYVA 470

Query: 488 ---------------KQQLDFFFKSEDPAFSIRIP--ADIFTLQRRQQTSTTK-----IE 525
                          K + D F  + D    I+         L +R   +  +       
Sbjct: 471 AAALTKPLEPADPPLKDEGDLFDLTVDQLLPIKAYVLDQDSGLPKRDPKTGEEKIATVFA 530

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
           N  G    +   + ++I   +   L R +  L IRHVG   A +LA+ + S     +   
Sbjct: 531 NQEGKAKKNALAMLENIAAAKERPLARLLTGLSIRHVGPVAAEALARAFRSIDRIEEASE 590

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNV 643
                       L     VG+I+A A+ +++    +   +                E   
Sbjct: 591 ----------EELKNTEGVGEIVAAAVKQWFAEEWHREIIRKWKAAGVRMEDEGSGEDEG 640

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA Q
Sbjct: 641 PRPLEGLTVVVTGTLEHFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQ 700

Query: 704 LGVKIMNEEQFLFLLQQ 720
           L V ++NEE    LL Q
Sbjct: 701 LKVPVLNEEGLNVLLGQ 717


>gi|329121050|ref|ZP_08249681.1| NAD-dependent DNA ligase LigA [Dialister micraerophilus DSM 19965]
 gi|327471212|gb|EGF16666.1| NAD-dependent DNA ligase LigA [Dialister micraerophilus DSM 19965]
          Length = 666

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 226/709 (31%), Positives = 369/709 (52%), Gaps = 46/709 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   +   ++  L +E+ YH   YY   KP I D E+D + R        +P+L      
Sbjct: 1   MITNEIISKVKKLREELRYHSYLYYVLDKPEISDFEFDKMYRELVDFESKYPELITQ--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+      KV    P LSL   +N ++L +F   +         ++I +  E
Sbjct: 58  DSPTQRVGGKATGDFKKVEFKKPMLSLSNAFNGKELIEFDRSVKETLN---TDNIEYITE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + + YE+GK +    RGDG  GEDV+A ++ I +IP  +    P I E+RGEV
Sbjct: 115 LKIDGLSMNLIYEEGKLIRGLTRGDGKVGEDVTANVKTIKSIPLYIENAPPYI-EIRGEV 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ ++ F++LN++  A G  P+AN RNAASG +R+L+P    +R L+FF + +G+T  I 
Sbjct: 174 FMPRSSFVSLNEKRDAAGIMPFANCRNAASGSIRQLDPNVTASRNLDFFAYSVGETEGIE 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q  +L  ++   F VN   ++ N+   ++   NE +  R  L YD DG+V KV++F 
Sbjct: 234 IKNQESLLNLLKKFHFKVNPNYKKINSIEKVIEIINEWQEKRHHLGYDTDGMVVKVNDFE 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q  LG  ++ P+W I++K+  ++A T + +I + +GRTG+LTP A L+ V I G ++  
Sbjct: 294 QQNVLGATSKDPKWAIAYKYPPEEAETVVENIIVTMGRTGVLTPSADLKSVQIAGTVVKR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN ++I+            +DIR+GD V + ++GE+IP++  ++ N+R    + F  
Sbjct: 354 ATLHNMNFIE-----------EKDIRIGDIVKIYKSGEIIPEISVVLKNKRTGKEKKFIM 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C+ ++ R           A+RC     C     E L HF SRDA NIEGLG   
Sbjct: 403 PSECPLCKHKIYRTEGE------VAYRCINP-DCGGVIRENLIHFASRDAMNIEGLGPAV 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D           I   AD + L++           I   G+ S  NL  SI   +N  L
Sbjct: 456 IDGLLAYN----LIENIADFYELRKDDII------QIERMGEKSAKNLLTSIENSKNRGL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+F+LGIRH+G + +  +++ +                      S+  V  +G+I A+
Sbjct: 506 SKFLFALGIRHLGEKGSELISEKFKDIDVLMNA----------SVDSIKSVSGIGNITAE 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I ++++N +N   +E L            K+  +  +   +V TG L  I R +A E +
Sbjct: 556 HIYKYFKNEKNKKIIERLKNHGILMKLNERKSEGNAFKGHNVVLTGKLSNIGRREAGEII 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             LG  + + +++ T ++IVG+N GSKLEKA++ G+KI+NE  FL ++ 
Sbjct: 616 KALGGNLQSTVTKTTTLVIVGENAGSKLEKAREKGIKIINENDFLKIIN 664


>gi|332366947|gb|EGJ44687.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1059]
          Length = 652

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 217/701 (30%), Positives = 355/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  R+ +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRVRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N      G   +ANPRNAA+G LR+L+   +    N       + S      Q  +
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQVGSQEAV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+  LGF VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++LG 
Sbjct: 231 LNKLAALGFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  +      PS CP C
Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EIPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           +S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  A I+ L          +  +  F + S   LY +I   +  S ER +F L
Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + +      +Q               +  +  +G +IAQ++  +++
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +  L +          +    + +    +V TG LQK+ R++A+E +  LGA 
Sbjct: 552 QEGSHILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 612 VSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|313890529|ref|ZP_07824157.1| DNA ligase (NAD+) [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121046|gb|EFR44157.1| DNA ligase (NAD+) [Streptococcus pseudoporcinus SPIN 20026]
          Length = 652

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 222/701 (31%), Positives = 368/701 (52%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K +  L   ++ +   YY    P + D EYD L     A+   +P+L +    + P   
Sbjct: 2   EKRIIELTNLLNQYRQEYYTNDNPTVSDQEYDKLYHELLALETEYPELIQK---DSPTQG 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +  ++ +  E KIDG 
Sbjct: 59  VGGLILSGFEKYQHPYPLYSLQDAFSQEELFAFDRRVK-----LEFPTVTYVAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y++GK V  A RG+G  GE+++  I+ I  IP+ L   I   I VRGE Y+SK+ 
Sbjct: 114 SISLDYKEGKLVTGATRGNGSVGENITENIKKIKDIPQTLKDPI--DITVRGEAYMSKHS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N E    G   +ANPRNAA+G LR+L+ + +    N       + S      Q  +
Sbjct: 172 FQMINIERQESGEAEFANPRNAAAGTLRQLDTSIV-SKRNLASFLYQEASPSQEITQVAV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+  LGF VN     +++   I  +  E++  R+ LPYDIDG+V KVD+ ++Q++LG 
Sbjct: 231 LDKLSHLGFSVNKHRMVSSSMEDIWQFIQEIEPDRAQLPYDIDGIVIKVDDLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  IGRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTIGRTGVVTPTANLRPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++ ++R  + +P   P+ CP C
Sbjct: 351 YI-----------AQKDIRIGDTVIVYKAGDIIPAVLRVVTDKR-KNQEPILIPNLCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           QS +    +        A RC   L C +     L+HF SR+A NI GLG   ++  F++
Sbjct: 399 QSSLTHLEDE------VALRCINPL-CPSLIQRSLEHFASRNAMNIAGLGPAVVEKLFRA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           +     I   ADI+ L R Q  S      + G  + S   L  +I   +  S E+ +F L
Sbjct: 452 Q----LIHDVADIYKLSREQLLS------LEGIKEKSADKLLSAIADSKEKSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG + +R L + +   +   Q   + IA          ++  +G +IA ++ +++ 
Sbjct: 502 GIRHVGEKASRLLLETFGDIETLMQSNEDAIA----------QIDGLGHVIANSLAQYFA 551

Query: 618 NPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            P     +  L  + ++ +      + S+ +    +V TG L+++ R +A+  + +LGA 
Sbjct: 552 KPEAQQLISELKCQGLNLTYLGQRVDQSAPLYGLTVVLTGKLEEMGRSEAKTKLEKLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V++ +S+KTD+++ G + GSKL+KA+QLG+++ +E+  L L
Sbjct: 612 VTSSVSKKTDVVLAGSDSGSKLDKARQLGIRVEDEQWLLDL 652


>gi|322411466|gb|EFY02374.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 652

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 214/701 (30%), Positives = 353/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  + + ++ +   YY    P + DSEYD L R    + + +P+       + P   
Sbjct: 2   KKRIREVTELLNRYRQEYYTNDSPSVSDSEYDKLYRELVELENQYPEHVLQ---DSPTQN 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +     +  E KIDG 
Sbjct: 59  VGGTLLTGFDKYQHQYPLFSLQDAFSREELDAFDKRVK-----SEFPDATYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G+    A RGDG  GE+++  ++ I  IP    L  P  I VRGE Y+S+  
Sbjct: 114 SISLSYENGQLQVGATRGDGSIGENITENLKQIKDIP--QVLPQPLTITVRGEAYMSRQS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N+E    G   +ANPRNAA+G LR+L+   +            + S      Q  +
Sbjct: 172 FKAINEERQENGETEFANPRNAAAGTLRQLDTAVV-AKRQLATFLYQEASPTTRSQQDHV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     +++   I ++   +++ R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LKALADLGFSVNQRYHLSSSMDEIWNFIQTVEAEREQLAYDIDGIVIKVNNLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  +GRTG++TP A L  V + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTSVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V++ +AG++IP V+ +I ++R      +  PS CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIIYKAGDIIPAVLRVISDKRQEQVPMWI-PSQCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           QS +V   +        A RC   L C +     L+HF SR+A NI GLG   ++  F  
Sbjct: 399 QSDLVHFEDE------VALRCINPL-CPSLIQRGLEHFASRNAMNIAGLGPAVVEKLF-- 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   ADI+ L +          ++ G  + S   L  +I   ++ S E+ +F L
Sbjct: 450 --LAGLVHDVADIYKLTKEDL------LHLDGIKEKSAEKLLAAIETSKSNSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRH+GA+ +R + +   + ++                  +  +  +G +IA+++V+++Q
Sbjct: 502 GIRHIGAKASRLILETCGNIEHLLTVRE----------EDIATIDGLGMVIAKSLVQYFQ 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
               I  VE L            + + ++E+    +V TG L+K+ R+ A+  +  LGA 
Sbjct: 552 QDSAILLVEELKNAGVNLAYLGQKIDSNAELFGLTVVLTGKLEKMTRNDAKAKLETLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KT+++I G + GSKLEKAQ LG++I  EE    L
Sbjct: 612 VTGSVSKKTNLVIAGSDAGSKLEKAQALGIRIEGEEWLEQL 652


>gi|312131728|ref|YP_003999068.1| DNA ligase, nad-dependent [Leadbetterella byssophila DSM 17132]
 gi|311908274|gb|ADQ18715.1| DNA ligase, NAD-dependent [Leadbetterella byssophila DSM 17132]
          Length = 680

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 211/717 (29%), Positives = 351/717 (48%), Gaps = 53/717 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +  + +L  +I++++D YY  +   I D E+D L +  + +  A P+      P+ P 
Sbjct: 2   DIKTRIQTLTDQINHYNDRYYLDAVSEISDFEFDTLLKELEELEKAHPEF---RQPDSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +  +   V H  P LSL   ++ E++R +  R+ +     +     +  E K D
Sbjct: 59  QRVGGSITRNFETVRHQFPMLSLSNTYSEEEIRDWDARVKKGL---EGEPYEYICELKFD 115

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVRGEVY 192
           G  ++IRYE G       RGDG  G+D++A ++ I ++P  +        E  EVRGE +
Sbjct: 116 GISLSIRYENGILTKGITRGDGVQGDDITANVKTIRSLPLNVRKFEEVLGENFEVRGEGF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +    F ALN E    G    ANPRNAA+G  +  + + +             + E    
Sbjct: 176 MPTKVFEALNKEKEIRGEALLANPRNAAAGTFKLQDSSVVASRKLDCFVYQFISGEERFT 235

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E    ++  GF V+N  ++ +   G++S+ +E    R TL    DG+V KV+ ++ +
Sbjct: 236 THEESFLALQSAGFKVSNSWKKVSNIEGVMSFIHEWDEKRHTLECATDGIVIKVNSYAQR 295

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  A+SPRW I++K+  +  ST LLD+  Q+GRTG +TPVA L PVN+    +  AT
Sbjct: 296 EKLGFTAKSPRWAIAYKYKAESKSTTLLDVTFQVGRTGTVTPVAELRPVNLSMTTVKRAT 355

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D I+ L            + +GD V V++AGE+IPKV  + V        P  FP+
Sbjct: 356 LHNADEIERL-----------GLAIGDEVFVEKAGEIIPKVTGVAVQSLA--RIPIVFPT 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + ++R+         AA  C     C  Q    ++HF+ R A +IE LG+ ++D
Sbjct: 403 ACPSCGTSLLRNEGE------AAWYCPNSEGCLPQIKGSIEHFIQRKALDIESLGEGKID 456

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL--------GFGDVSVTNLYDSINK 544
              ++      IR  AD++ L+        K+             F + +V N+ + I K
Sbjct: 457 ILLEN----GLIRDAADLYQLKYEDLIGLEKVHVDEETGKSKKISFKEKTVKNILEGIAK 512

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +   L + +F +GIR VG   A+ LA ++ S Q               ++  L+ VP V
Sbjct: 513 SKEEPLAKLLFGIGIRFVGETTAQKLAAHFKSMQGLMNA----------NYEELLAVPDV 562

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQ 662
           G+ +AQ+I +++Q+      +  L          HE+     + +E   L++TGT +   
Sbjct: 563 GEKVAQSIRDYFQSESKQHFIAKLQVAGLQMEAVHEEVVTEGNALEGLSLLYTGTFENFS 622

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           R + +  +   G  + + +S+K   +IVG+  G SKL+KA++LG+ I+NEEQFL  L
Sbjct: 623 REELERKIEANGGKLVSGVSKKLSYLIVGEGAGPSKLKKAEELGIPILNEEQFLAKL 679


>gi|302558233|ref|ZP_07310575.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000]
 gi|302475851|gb|EFL38944.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000]
          Length = 731

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 218/737 (29%), Positives = 351/737 (47%), Gaps = 62/737 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR++ + L + I  H   YY    P+I D+++D   R    +     +      P+ 
Sbjct: 13  PAEAREKHAKLAERIEEHRFRYYVNDAPVISDADFD---RLLRELEALEEEHPELRTPDS 69

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G        V H    LSL+  +N +DL  ++ RI+R           F  E K
Sbjct: 70  PTQKVAGAYETEFTSVEHRSRMLSLDNTFNDDDLAAWVERIHRELG---TQKYHFLCELK 126

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YE+G+ V AA RGDG +GED++  +R I  IP  L+ +  P+++E+RGEVY
Sbjct: 127 VDGLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLTGDEVPDVVEIRGEVY 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                F  LN  ++  G KP+ANPRNAA+G LR+ +P    TR L+  VHG+G       
Sbjct: 187 FPMEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGVLEGYRG 246

Query: 252 KGQYEM-LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             +     + +R  G P +   R  +   G+  +       R ++ ++IDG+V K+DE  
Sbjct: 247 MTRLSQGYELLRTWGLPTSPHNRVVDDLEGVREFIAYYGENRHSVAHEIDGVVVKLDEIP 306

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ +LG  +R+PRW I++K+A ++ +TRL++I + +GRTG +TP A++EPV + G+ +  
Sbjct: 307 LQGRLGSTSRAPRWAIAYKYAPEEVNTRLVNIRVGVGRTGRVTPYAQVEPVTVAGSEVEF 366

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+D +K            + + +GD V++++AG+VIP+++  + + R    + F  
Sbjct: 367 ATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVM 415

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG--- 487
           P+ CP C + +         +     RC     C AQ  ERL +   R A +IE  G   
Sbjct: 416 PAECPECGTPLRPM-----KEGDVDLRCPNARTCPAQLRERLFYLAGRKALDIEHFGYVA 470

Query: 488 ---------------KQQLDFFFKSEDPAFSIRIP--ADIFTLQRRQQTSTTK-----IE 525
                          + + D F  + D    I+         L +R   +  +       
Sbjct: 471 AAALTRPLEPEEPPLRDEGDLFDLTVDQLLPIKAYVLDQDSGLPKRDPKTGEEKIATVFA 530

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
           N  G    +   +  +I   +   L R + SL IRHVG   A +LA+ + S     Q   
Sbjct: 531 NQEGEPRKNAVAMLANIAAAKERPLARVLTSLSIRHVGPVAAEALAREFRSIDRIEQATE 590

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNV 643
                       L     VG IIA ++ +++    +   +                E   
Sbjct: 591 ----------EELAATEGVGGIIAASLKQWFAEDWHREIIRKWKTAGVRMEDERSGEDEG 640

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VGDNPGSK +KA Q
Sbjct: 641 PRPLEGLTVVVTGTLENFTRDGAKEALQSQGAKVTGSVSKKTAFVVVGDNPGSKYDKAMQ 700

Query: 704 LGVKIMNEEQFLFLLQQ 720
           L V ++NE+ F  LL+Q
Sbjct: 701 LKVPVLNEDGFNVLLEQ 717


>gi|15900984|ref|NP_345588.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae TIGR4]
 gi|81531953|sp|Q97QT2|DNLJ_STRPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|14972593|gb|AAK75228.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae TIGR4]
          Length = 652

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 213/700 (30%), Positives = 356/700 (50%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSCEELDAFDARVRKEVAHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q + L
Sbjct: 173 DQVNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ LQ            + G  + S   LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG+++++ L +Y+ S +N +Q           D   +  +  +G +IA+++  ++  
Sbjct: 503 IRHVGSKVSQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   +  L +       +       + +    +V TG L++++R +A+  +  LGA V
Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSISKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|296532809|ref|ZP_06895486.1| NAD-dependent DNA ligase LigA [Roseomonas cervicalis ATCC 49957]
 gi|296266870|gb|EFH12818.1| NAD-dependent DNA ligase LigA [Roseomonas cervicalis ATCC 49957]
          Length = 719

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 271/706 (38%), Positives = 388/706 (54%), Gaps = 44/706 (6%)

Query: 32  DDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTH 91
           D  Y+Q   P+I D+EYDAL+RR  AI   FP L R++ P+               K  H
Sbjct: 33  DLAYHQQDAPVITDAEYDALRRRNAAIEARFPALKRADSPSDASPG--AAPAAGFAKARH 90

Query: 92  SIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151
             P LSL+  +  ED  +F   I RF +  +   + F  EPKIDG  + + YE G FV  
Sbjct: 91  GTPMLSLDNAFAPEDFLEFTKSIRRFLRLDEAELLRFVAEPKIDGLSVNLTYENGVFVRG 150

Query: 152 ALRGDGHSGEDVSACIRAI--PTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
           A RGDG  GED++  +       +PR L+   PE IE+RGEV+++K DF+A  DE   + 
Sbjct: 151 ATRGDGTEGEDITRNLETFSDKNLPRRLAAPFPEQIEIRGEVFMTKADFIAFRDEQARLA 210

Query: 210 R----------------KPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
                            +  ANPRNAA+G LR+L+P     R L  F +  G++S   A+
Sbjct: 211 EEREQRRERGEKVGPEIRIPANPRNAAAGSLRQLDPEITRQRPLRLFAYAQGESSAPVAE 270

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
                L ++   GF VN   R     H   ++  EM + R+ L YDIDG+VYK+D    Q
Sbjct: 271 THSGYLARLAEWGFDVNPLSRALPDEHAAEAFQAEMAAQRAGLAYDIDGVVYKLDRLDWQ 330

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG   R+PRW I+ KF  +QA TRLLDI IQ+GRTG LTP A ++PVN+GG ++ +AT
Sbjct: 331 ARLGFVGRAPRWAIAWKFPAEQAMTRLLDIQIQVGRTGALTPRAVMQPVNVGGVMVQHAT 390

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             +D+R+GD V+++RAG+VIP++V I+  +R  +A PF+FP+
Sbjct: 391 LHNEDEIAR-----------KDVRIGDTVILQRAGDVIPQIVGIVPEKRPAEAVPFAFPT 439

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S  VR             RCTGGL C AQ +ERLKHFV R A +IEGLG++ + 
Sbjct: 440 TCPACGSHAVRPEGE------VVRRCTGGLICPAQTVERLKHFVGRTAMDIEGLGEENIL 493

Query: 493 FFFKSEDPAFSIRIPADIFTLQRR-QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
              +       ++ PADIF L R  ++    +           V NL  +I  RRN  LE
Sbjct: 494 RLHEE----GLVKSPADIFRLHRHAERMRGWEGWGKGAKTSKKVDNLLAAIEARRNPPLE 549

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RFIF+LGIR +GA+ A+ LA++Y S   +  ++       ++    L  +  VG  IA  
Sbjct: 550 RFIFALGIRRIGAQNAKLLARHYHSLAEWRAKMLAATIIGSEAREELGSIQGVGPAIATE 609

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           + EF+   RN  A++ L +EV+P      ++  S    K +VFTGTL++  R +A+    
Sbjct: 610 LAEFFAEQRNRDALDDLAREVTPQDAERLES-DSPFAGKVVVFTGTLERSSRDEAEAVAD 668

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +LGA V+  +S+KTD ++VG + GSK +KA +LGV+ + E ++  L
Sbjct: 669 RLGAKVTKSVSKKTDFVVVGADAGSKAKKAAELGVRTLTEPEWRAL 714


>gi|327470726|gb|EGF16182.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK330]
          Length = 652

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 219/701 (31%), Positives = 356/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  RI +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRIRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKTS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N      G   +ANPRNAA+G LR+L+   +    N       + S      Q E+
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQVGSQEEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+  L F VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++LG 
Sbjct: 231 LNKLAALDFSVNPTHILADSIEAVWEFIEKIAQERDSLPYEIDGIVIKVNDLAVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  +      PS CP C
Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EVPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           +S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 ESDLVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  A I+ L          +  +  F + S   LY +I   +  S ER +F L
Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + +      +Q               +  +  +G +IAQ++  +++
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +  L +          +    + +    +V TG LQK+ R++A+E +  LGA 
Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 612 VSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|303327018|ref|ZP_07357460.1| DNA ligase, NAD-dependent [Desulfovibrio sp. 3_1_syn3]
 gi|302863006|gb|EFL85938.1| DNA ligase, NAD-dependent [Desulfovibrio sp. 3_1_syn3]
          Length = 711

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 254/741 (34%), Positives = 381/741 (51%), Gaps = 63/741 (8%)

Query: 1   MKKRQLIPIEALSI------EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRR 54
           M  +   P+E  S+       Q R+    L  E+  H+  Y+    P I D +YDAL R 
Sbjct: 1   MSPQNKPPVEQHSLLAPQPSAQERERARRLSAELERHNYLYHTLDAPEISDEQYDALFRE 60

Query: 55  CDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI 114
              +   +P L     P+ P  ++GG +   L K  H      L+ +++ ED R F+ R+
Sbjct: 61  LTELEERWPGL---RSPHSPTLRVGGRLLDGLAKKAHRRRMYGLDNVFSDEDWRDFVERM 117

Query: 115 YRFWQKKDDNSIF--FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT 172
            R W  + +  +   F  +PK+DG  + I YE G  + A  RGDG  GE V+  +R I T
Sbjct: 118 QRAWDAELNGPLPLGFWCDPKLDGLALEIIYENGLLIEALTRGDGEIGEVVTEAVRTIRT 177

Query: 173 IPRVLSL--NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230
           +P  L      P  +EVRGEV + K DF ALN +  A+GRK +ANPRNAA+G LR+L+ +
Sbjct: 178 VPLRLRGEGPFPARLEVRGEVVMFKKDFEALNAQQEALGRKTFANPRNAAAGTLRQLDIS 237

Query: 231 DITRYL-NFFVHGLGKTSEIFAK---GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYN 286
                   F  + LG+     AK    Q+E++ ++   GF      R       + +Y  
Sbjct: 238 VTESRPLRFLAYSLGEADWAPAKPCLFQHELMARLTAYGFLTPPDGRLCAGADEVEAYAA 297

Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQI 346
            ++  R   P +IDG V K D    Q+ LG  AR+PR+ ++ KF   QA TRL  IDIQ+
Sbjct: 298 WVREHRQDFPMEIDGAVAKEDNLEAQEALGFTARAPRFAVAFKFPAMQAETRLTGIDIQV 357

Query: 347 GRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRA 406
           GRTG+LTPVA LEPV +GG +++ ATLHNED I+            RD+RVGD V+V+RA
Sbjct: 358 GRTGVLTPVAVLEPVPVGGVMVSRATLHNEDEIR-----------ARDVRVGDTVIVQRA 406

Query: 407 GEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA 466
           G+VIP+VV  +++ R PDA  F FP  CP C   V R+         AA RC   L+C A
Sbjct: 407 GDVIPEVVGPVLSRRPPDAVEFVFPHTCPACGEAVHREPGE------AAWRCDN-LSCPA 459

Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN 526
            +L  + HFVS+   +I+G+G++ +         +  ++ PAD+FTL+  +     ++  
Sbjct: 460 VRLRAISHFVSKAGLDIQGVGQKWIAQLV----TSGRVQSPADLFTLKAEELLDFERMGE 515

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
           +L    V   +       R   +L R I +LGIRHVG + AR LA ++    +  +    
Sbjct: 516 VLARKFVDALD-----EARHTATLPRLISALGIRHVGEQTARLLAGHFRDLDDLGRA--- 567

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI--------GR 638
                  D  +L  +P VG  +A +I  FY++P N   +E   +     +          
Sbjct: 568 -------DAETLQALPDVGPEVAASIRNFYESPANRAQLERFREMGLWPLSPLADANSAE 620

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
             +     ++ K ++FTGTL  +QR KAQ      GA+ +  +++K D ++VGD PGSKL
Sbjct: 621 TAQTQVGPLQGKNILFTGTLS-LQRGKAQHLAEAAGAIPAGSVNKKLDFLVVGDKPGSKL 679

Query: 699 EKAQQLGVKIMNEEQFLFLLQ 719
           +KA+ LG+ +++E  F  LL 
Sbjct: 680 DKARTLGIAVLDEAGFRELLA 700


>gi|157150014|ref|YP_001450670.1| NAD-dependent DNA ligase LigA [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|190359295|sp|A8AY10|DNLJ_STRGC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157074808|gb|ABV09491.1| DNA ligase, NAD-dependent [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 652

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 217/701 (30%), Positives = 355/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +S L   ++ +   YY    P + DSEYD L R   ++   +P+      P  P ++
Sbjct: 2   KDRMSELVSLLNRYAHEYYTKDAPSVSDSEYDQLYRELVSLEEQYPNEIL---PESPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++  +L  F  R+ +     +     +  E KIDG 
Sbjct: 59  VGGKVLDGFEKYQHQYPLYSLQDAFSRAELVAFDERVRK-----EFPDASYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ K  
Sbjct: 114 SISLAYENGILVAGATRGDGSIGENITENLKRVKDIPLTLPEPL--TITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N      G   +ANPRNAA+G LR+L+ + +    N       + S      Q ++
Sbjct: 172 FDAVNQLRQENGEAEFANPRNAAAGTLRQLDTSVV-AKRNLATFLYQEASPTSEATQEDV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+K+  LGF VN     A+T   +  +  ++   R  LPY+IDG+V KV+  + Q++LG 
Sbjct: 231 LEKLSQLGFSVNEKRVLASTIDQVWDFIEKVGQERDKLPYEIDGIVIKVNHLAAQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI+            +DIR  D V+V +AG++IP V+ ++  +R  D      PS CP C
Sbjct: 351 YIR-----------EKDIRKDDTVIVYKAGDIIPAVLRVVEGKRVSDEHL-DVPSKCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           QS ++   +        A RC   L C AQ +E L HF SRDA NI GLG   ++  F  
Sbjct: 399 QSDLLHFEDE------VALRCINPL-CPAQIMEGLAHFASRDAMNISGLGPAVVEKLFAK 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           +     +R  A I+ L             +  F + S   LY++I   ++ S E+ +F L
Sbjct: 452 D----LVRDVAGIYRLNIEDL------LQLENFKEKSANKLYNAIQASKSNSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + +    + AQ           +   ++ +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKASRILLEKFHDIPSLAQA----------EQEEIVSIDSLGMVIAKSLHSYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  ++ L +          +    + +  K +V TG L+ + R +A+E + +LGA 
Sbjct: 552 QEGTQILLKELEEAGVNLAYLGEKAAADAVLSGKTVVLTGKLETLTRTQAKEKLLRLGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD++I G + GSKL KAQ+LG++I +E     L
Sbjct: 612 VAGSVSKKTDLVIAGADAGSKLAKAQELGIEIQDEAWLEQL 652


>gi|307067701|ref|YP_003876667.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Streptococcus pneumoniae AP200]
 gi|306409238|gb|ADM84665.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Streptococcus pneumoniae AP200]
          Length = 648

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 212/698 (30%), Positives = 353/698 (50%), Gaps = 51/698 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++GG
Sbjct: 1   MNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           ++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  I+
Sbjct: 58  KVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLSIS 112

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F  
Sbjct: 113 LTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASFDQ 170

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q + L+ 
Sbjct: 171 VNQVRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGLKY 229

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   +
Sbjct: 230 LEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVK 289

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI 
Sbjct: 290 APKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI- 348

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
                       +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S 
Sbjct: 349 ----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCNSD 397

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F     
Sbjct: 398 LLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----A 446

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
           A  ++  ADI+ LQ            + G  + S   LY +I   +  S E+ +F LGIR
Sbjct: 447 ANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIR 500

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           HVG++ ++ L +Y+ S +N  Q           D   +  +  +G +IA+++  ++    
Sbjct: 501 HVGSKASQLLLQYFHSIENLYQA----------DSEEVASIESLGGVIAKSLQTYFATEG 550

Query: 621 NICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
           +   +  L +       +       + +    +V TG L++++R +A+  +  LGA V+ 
Sbjct: 551 SEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTG 610

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 611 SVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 648


>gi|116334213|ref|YP_795740.1| NAD-dependent DNA ligase [Lactobacillus brevis ATCC 367]
 gi|122269104|sp|Q03Q13|DNLJ_LACBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116099560|gb|ABJ64709.1| NAD-dependent DNA ligase [Lactobacillus brevis ATCC 367]
          Length = 676

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 254/719 (35%), Positives = 387/719 (53%), Gaps = 51/719 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           PI+ L++EQA +E + L  ++      YY+   P + D  YD +  R  A+  AFP++  
Sbjct: 5   PIKTLTVEQAAEEAADLRPQLLEWGKQYYEADAPSVEDDVYDRVYARLVALETAFPEIV- 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++GG     L KVTH IP LSL  ++++++L +F  R     +   D    
Sbjct: 64  --TPDSPTQRVGGSSRSDLPKVTHDIPMLSLGDVFSLDELTEFDER----LRGNVDTPFD 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           +  E KIDG  I++RYE GKFV  + RG+G  GED++A ++ I +IP   +L+ P  IEV
Sbjct: 118 YNCELKIDGLAISLRYENGKFVQGSTRGNGQIGEDITANLKTIKSIP--QTLSRPLTIEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE Y+ K  FLALN+   A G+ P+ANPRNAA+G LR+L+      R L  F++ +   
Sbjct: 176 RGECYMPKAAFLALNERREAAGQAPFANPRNAAAGSLRQLDTRVTADRQLATFMYNVADY 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
             +  + Q  +L ++  LGF  N   R A+    + +Y    ++ R+ L Y IDG+V K 
Sbjct: 236 EPLTTRTQSGLLDELAELGFTTNATYRVAHDMADVAAYIETYQAQRTELAYGIDGIVIKA 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++  LQ+ LG   + PRW I++KF  ++  TR+LDI+  IGRTG++TP A +EPV + G+
Sbjct: 296 NDLPLQRSLGATVKVPRWAIAYKFPPEEVQTRVLDIEWTIGRTGVVTPTAIMEPVALAGS 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  A+LHN DY+             +DIR+GD VL+ +AG++IP++   +  +R  +A+
Sbjct: 356 TVARASLHNPDYL-----------IAKDIRIGDTVLLHKAGDIIPEISQYVAAKRPAEAK 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            +  P+ CP C + +V   +        A RC     C AQ  E + HF SR+A NI GL
Sbjct: 405 AYVIPTTCPSCGAELVHLDDE------VALRCINPR-CPAQLAEGMNHFASRNAMNIAGL 457

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G Q +   F        ++  AD++ L   Q  +      +  FG+ S  NL  +I+  R
Sbjct: 458 GPQIVAQLFDRN----LVQDVADLYRLTTDQLLT------LDKFGEKSAQNLLTAIDNSR 507

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           N SLER +F LGIRHVGA+ ARSLA  +    +              D   +  +  VG 
Sbjct: 508 NNSLERLLFGLGIRHVGAKAARSLAAAFGDMASLMAA----------DSEQISAIDTVGG 557

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQR 663
           IIA ++V ++ N +    V  L           G    N +SE   K++V TG LQ++ R
Sbjct: 558 IIADSVVTYFANTQVHELVAKLQAVGVNMTYTSGTPATNSTSEFTGKRVVLTGKLQELTR 617

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +A E++ Q GA V+  +S+KTD++I G+  GSKL KAQ L V + NE Q    + +  
Sbjct: 618 PQATEWLEQHGATVTGSVSKKTDLLIAGEAAGSKLAKAQSLDVPVWNEAQLQAAMDETK 676


>gi|94263030|ref|ZP_01286849.1| DNA ligase (NAD+) [delta proteobacterium MLMS-1]
 gi|93456573|gb|EAT06681.1| DNA ligase (NAD+) [delta proteobacterium MLMS-1]
          Length = 678

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 236/697 (33%), Positives = 371/697 (53%), Gaps = 44/697 (6%)

Query: 26  QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85
           + I+YH+  YY    P + D EYD L R  + +   +P+L  +   + P  ++GG     
Sbjct: 22  ELIAYHNHRYYVLDDPELSDGEYDRLFRELEELESRWPELVTA---DSPSRRVGGAAAEQ 78

Query: 86  LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145
              V H++P LSLE  +   +L  F  R+ RF    DD  I +  EPK+DG  + + YE+
Sbjct: 79  FAPVRHAVPMLSLENAFAEAELYDFENRLRRFLNL-DDQPIAYYAEPKLDGLAVELVYEQ 137

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDE 204
           G F   + RGDG  GE++SA ++ I  IP  L     P  +++RGEV ++   F ALN++
Sbjct: 138 GFFTLGSTRGDGLVGENISANLKTIDDIPIRLRGEQAPARLDIRGEVCLTVAGFTALNEQ 197

Query: 205 MIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
               G   +ANPRNAA+G LR+L+P     R L FF +G+     +    Q ++++ +  
Sbjct: 198 RAQNGESLFANPRNAAAGSLRQLDPAISAARPLEFFAYGVADADPLAVGSQQQVIELLAA 257

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
           LGF              +++++ ++   RS LPY+IDG+V KV+E +LQK+LG + R+PR
Sbjct: 258 LGFKTIPHGHLCPDLAAVIAHFQQLAQRRSQLPYEIDGMVAKVNELALQKRLGSKTRTPR 317

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           W I+ KF   QA+TRLL ++ Q+GRTG +TPVARLEPV +GG  ++ ATLHNE  I+   
Sbjct: 318 WAIAAKFPAVQATTRLLAVEYQVGRTGAVTPVARLEPVTVGGVTVSRATLHNEAEIRR-- 375

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
                    +D+R+ D VLV+RAGEVIP+VV  +  +R+   +  + P+ CP C S+++R
Sbjct: 376 ---------KDLRLEDTVLVQRAGEVIPEVVKPLAEKRNGRQREITLPTHCPECGSQLIR 426

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
                        RC     C AQ+L  L HF  +   +IEGLG++ L+        A  
Sbjct: 427 PAAE------VVLRCPNHRHCPAQRLRALIHFCGKAGLDIEGLGQKVLEQLT----AAGL 476

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           +    DIF L+  Q         + G+G+    N+  ++N+RR + L R + +LGIRH+G
Sbjct: 477 VGDIPDIFRLRAAQL------APLPGWGEKKAANVIAAVNRRRRVELGRLLAALGIRHIG 530

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              A+ LA+ + + +                    + +  +G   A A+V ++  P N  
Sbjct: 531 EVTAQLLARRFGTLEGLLAAGE----------EDFLDIEGIGPQAAAALVTYFAAPGNRE 580

Query: 624 AVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
            +  L +E+   I        S  + ++  +FTGTL    R +A+  V +LG  V+  L+
Sbjct: 581 ILRQLQEELGLEIQPEGGPEQSQPLGDRVFLFTGTLSNWSRSEAKARVKELGGEVATSLN 640

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R+   ++ G  PGSKL KA+++G+ I++EEQF  LL 
Sbjct: 641 RRVTHLVCGSKPGSKLPKAREMGLTILDEEQFRRLLA 677


>gi|332361975|gb|EGJ39777.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK49]
          Length = 652

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 218/701 (31%), Positives = 357/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  R+ +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRVRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N      G   +ANPRNAA+G LR+L+   +    N       + S      Q E+
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQVGSQEEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+  L F VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++LG 
Sbjct: 231 LNKLADLDFSVNPTHILADSIESVWEFIEKIAEERDSLPYEIDGIVIKVNDLAVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  +      PS CP C
Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEAL-EVPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           +S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  A I+ L      +   +  +  F + S   LY +I   +  S ER +F L
Sbjct: 452 N----LVKDVAGIYRL------TIENLLELENFKEKSANKLYTAIQASKKNSAERLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + +      +Q               +  +  +G +IAQ++  +++
Sbjct: 502 GIRHVGSKASRILLEKFHDILRLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +  L +          +    + +    +V TG LQK+ R++A+E +  LGA 
Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 612 VSGSVSKKTDLVVAGADAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|325694926|gb|EGD36831.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK150]
          Length = 652

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 220/701 (31%), Positives = 358/701 (51%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  R+ +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRVCK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N      G   +ANPRNAA+G LR+L+   +    N       + S      Q  +
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQVGSQEAV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+  LGF VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++LG 
Sbjct: 231 LNKLAALGFSVNPTHILADSIESVWEFIEKIAEERDSLPYEIDGIVIKVNDLAVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEREAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  +      PS CP C
Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EIPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           +S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 ESELVHFKDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  A I+ L          +  +  F + S   LY +I   +  S ER +F L
Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + +      +Q               +  +  +G +IAQ++  +++
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +  L +         +K V  + +    +V TG LQK+ R++A+E +  LGA 
Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAVADAALSGMTVVLTGKLQKLTRNQAKEKLQNLGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 612 VSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|311898479|dbj|BAJ30887.1| putative DNA ligase [Kitasatospora setae KM-6054]
          Length = 788

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 227/763 (29%), Positives = 343/763 (44%), Gaps = 80/763 (10%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + R   + L  EI  H   YY+   P++ D+E+DAL R  +A+  A P LA    P+ 
Sbjct: 8   PAEVRTRHAELATEIEEHRSRYYEQDAPVVTDAEFDALMRELEALEAAHPALA---TPDS 64

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+GG        V H    LSL+   +  +L  +  R+       D +   +  E K
Sbjct: 65  PTRKVGGAPTALFAPVEHRERLLSLDNAMDDAELAAWAERVAAELAGIDYH---YLCELK 121

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YE+G  V AA RGDG  GED++  +R I  +P  L     PE++EVRGEVY
Sbjct: 122 VDGLAVNLTYERGVLVRAATRGDGRVGEDITPNVRTIEGVPHRLRGEDLPELVEVRGEVY 181

Query: 193 ISKNDFL--------------ALNDEMIAVGRKPYA------NPRNAASGILRRLNP-TD 231
               +F                 N+E    G++P A      NPRNAA+G LR+ +P   
Sbjct: 182 FPTAEFEALNASFEAENARRRQENEERAKEGKRPRALIRLFMNPRNAAAGSLRQKDPLIT 241

Query: 232 ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
             R L   VHG+G  +      Q      +R  G P         T   + ++       
Sbjct: 242 AARPLRLVVHGIGARTGFDIDNQSHAYDLLRGWGLPTARHNAVVGTLDEVRAFIARFGER 301

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R ++ ++IDG+V KVDE +LQ +LG  ++SPRW I+ K+  ++ + RL DI I IGRTG 
Sbjct: 302 RHSVEHEIDGVVVKVDEIALQGRLGATSKSPRWAIAWKYPPEEVTGRLTDIRIGIGRTGR 361

Query: 352 LTPVARLE-PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            TP A LE PV + G+++  ATLHN+  +K            + + +GD V++++AG+VI
Sbjct: 362 ATPYAVLEKPVKVAGSMVQYATLHNQQVVK-----------AKGVLLGDTVVLRKAGDVI 410

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P++V  + + R    + F  P+ CP C S +         +     RC     C AQ  E
Sbjct: 411 PEIVGPVHDLRDGGEREFVMPADCPECGSGLRPM-----SEGDIDLRCPNTRYCPAQIRE 465

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA-FSIRIPADIFTLQRRQ------------ 517
           R+     R+  ++EG G        +  +P    +R   DIF L   +            
Sbjct: 466 RVAFLAGRNCLDVEGFGYVAATALTQPLEPTEPPVRDEGDIFGLTEERLLPIRVLVRDPR 525

Query: 518 ------------QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
                       Q       N  G      T L D++   R   L RF+  L IRHVG  
Sbjct: 526 TSMPKLDDETGEQKEVFFFANNAGTARKDTTALLDNLRAARTSPLWRFLNGLSIRHVGPV 585

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A++LA+ +                   D   L  V  +G  IA+A+ E+Y    +   +
Sbjct: 586 AAQALAREFRDLDRVFAA----------DETELTAVEGIGPTIARAVKEWYAEDWHREIL 635

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           E             E+     +E   +V TGTL    R  A+E +   GA V+  +S+KT
Sbjct: 636 EKWRAAGVVFTEEAEELGERPLEGLTVVVTGTLAGHTRDGAKEALASRGAKVTGSVSKKT 695

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIH 728
             ++ GDNPGSK +KA QLG+ ++++  F  LL++     R H
Sbjct: 696 HFVVAGDNPGSKYDKAVQLGLPVLDDAGFAVLLERGADAARAH 738


>gi|284032790|ref|YP_003382721.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836]
 gi|283812083|gb|ADB33922.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836]
          Length = 709

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 216/710 (30%), Positives = 348/710 (49%), Gaps = 37/710 (5%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + R+  ++L +EI  H   YY  +   I D+++DAL      I   + +L     P+ 
Sbjct: 17  PAEVRERHAALSREIEEHRFRYY-MATSTISDADFDALMHELQGIEQQYQEL---RTPDS 72

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+G  ++     VTH     SL   ++ E +  +  R+ R    +  +   F  E K
Sbjct: 73  PTQKVGVPISTLFAPVTHPTRMESLGNAFSAEQMEAWAKRLEREVTAQQIHDSGFLCELK 132

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YE G+ V  A RGDG +GEDV+  +R I +IP  L+ +  P  +EVRGEVY
Sbjct: 133 VDGLALDLVYENGRLVTGATRGDGRTGEDVTLNVRTIDSIPNELAGDDLPSFLEVRGEVY 192

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251
               DF  LN +++  G+ P++NPRN+A+G LR+ +P     R L F VHGLGK      
Sbjct: 193 FRVEDFEQLNAQLVEAGKDPFSNPRNSAAGSLRQKDPRVSAARPLRFVVHGLGKVEGYRV 252

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           +   E  ++++  G PV++  R+  T   +  +       R ++ ++IDG+V KVDE  L
Sbjct: 253 RRLSEAYEQLKAWGLPVSDRARRVETLAEVNEFIAHYGENRHSVDHEIDGVVVKVDEVDL 312

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  + +PRW I++K+  ++ +T+LLDI++ +GRTG +TP  ++EPV + G+ +  A
Sbjct: 313 QRALGSTSSAPRWAIAYKYPPEEVTTKLLDIEVNVGRTGRVTPYGKMEPVRVAGSTVEFA 372

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   ++            + + +GD V++++AG+VIP+++  ++  R  +A PF  P
Sbjct: 373 TLHNAREVER-----------KGVWIGDTVVLRKAGDVIPEILGPVIELRPQEAHPFRMP 421

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C + +         +     RC    +C AQ  ERL H   R AF+IE LG +  
Sbjct: 422 TQCPSCGTTLRPM-----KEGDVDIRCPNAQSCPAQLRERLFHLAGRSAFDIEVLGFKAA 476

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D     E     I    D+F L  +    +       G    +   L  ++   +   L 
Sbjct: 477 DALISGE----LITDEGDLFDLTEQDLGRSPFFTTKAGALSANAKRLLANLETAKTQPLA 532

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R + +L IRHVG   A +LA  Y                       L ++  VG  IA A
Sbjct: 533 RGLVALSIRHVGPTAAAALAAAYDDIDAIQAAGE----------DELAQIEGVGPTIAHA 582

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++E++Q   +   V                  V   +    +V TGT++   R +A E +
Sbjct: 583 VIEWFQVDWHQQIVRKWKAAGVQLRQERTGPTVEQTLTGLSVVVTGTVEGFSRDEATEAI 642

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
              G   +  +S+KT  ++VGD+PGSK +KA QLGV I++   F  LL Q
Sbjct: 643 VSRGGKAAGSVSKKTSFVVVGDSPGSKYDKAVQLGVPILDAAGFEVLLDQ 692


>gi|120602570|ref|YP_966970.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
 gi|166215379|sp|A1VDM7|DNLJ2_DESVV RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|120562799|gb|ABM28543.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
          Length = 797

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 238/720 (33%), Positives = 372/720 (51%), Gaps = 58/720 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E+AR+  + L  ++  H+  YY+   P I D+EYD L R    +   +P L    D   
Sbjct: 36  PEEARQRAAQLRADLERHNRLYYELDTPEISDAEYDVLYRELVGLERRWPAL---RDEAS 92

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE+   L K  H++   SL+  ++ ++   F+ R+Y       D    F  +PK
Sbjct: 93  PTQRVGGEVLEGLEKQAHTLRMYSLDNAFSRDEWGAFMQRMYNAL---PDAPSAFWCDPK 149

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YE G F  A  RG+G  GE V+A +R +  +P  L  +  P  IEVRGEV 
Sbjct: 150 MDGLALEVIYENGVFTSALTRGNGEVGEVVTAAMRTVRNLPLALRGDDVPRRIEVRGEVV 209

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS---- 247
           I+K DF  LN    A G K +ANPRNAA+G +R+L+ T    R L F  +G+G+      
Sbjct: 210 IAKADFEQLNARQSAAGGKLFANPRNAAAGSVRQLDTTVTAGRPLQFLAYGVGQVVLEGG 269

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                    ++ ++R  GF      R   +   + +YY  + + R +L  +IDG+V K+D
Sbjct: 270 TAPWTTHSGLMARLREWGFDTPPEGRLCASPDEVWAYYEALGARRESLAIEIDGVVAKLD 329

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   Q+ LG  AR+PRW ++ KF   QA TRL DI +Q+GRTG+LTPVA LEPV +GG  
Sbjct: 330 DTEAQEALGFTARAPRWALALKFPAMQARTRLDDIRVQVGRTGVLTPVAILEPVRVGGVE 389

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNED I+            + + +GD VLV+RAG+VIP+VV  +V ER  D +P
Sbjct: 390 VSRATLHNEDEIR-----------AKGLMLGDMVLVQRAGDVIPEVVRPLVEERTGDERP 438

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP C S VVR           AHRC   + C A + + + HFVS+   ++ G+G
Sbjct: 439 FVFPENCPECDSPVVRPQGE------VAHRCVNVM-CPAVRRQSIIHFVSKAGLDVRGVG 491

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ +            +  P  +F+L +               G  S  N   +++  R 
Sbjct: 492 ERWVQQLVD----GGHVTSPVGLFSLTKLDLMRF------ERMGPTSAANFVTALDAART 541

Query: 548 -ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L R I +LGIRHVG + AR+LA  +       +           D  +L ++P +G 
Sbjct: 542 GATLVRLICALGIRHVGEQTARTLAANFTDLDALREA----------DAETLQQLPDIGP 591

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS-------PSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +A +I  F+ N  N+  +E L            P        +   ++  K++FTG+L 
Sbjct: 592 EVAGSIRTFFANEGNLELLERLRAIGLWPKRQDAPPAPEGADAIVRPLQGLKVLFTGSLT 651

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ R +A++     GA +++ +++  D+++VG  PGSKLEKA++LG+++M E  F  +L+
Sbjct: 652 RVGRTEAEDMARAAGANIASSVTKSLDLLVVGGKPGSKLEKARKLGIRVMEEADFFAMLE 711


>gi|262282968|ref|ZP_06060735.1| NAD-dependent DNA ligase LigA [Streptococcus sp. 2_1_36FAA]
 gi|262261220|gb|EEY79919.1| NAD-dependent DNA ligase LigA [Streptococcus sp. 2_1_36FAA]
          Length = 652

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 217/701 (30%), Positives = 356/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +S L   ++ +   YY    P + DSEYD L R   ++   +P+      P  P ++
Sbjct: 2   KDRMSELVSLLNRYAHEYYTKDAPSVSDSEYDQLYRELVSLEEQYPNEIL---PESPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++  +L  F  R+ +     +   + +  E KIDG 
Sbjct: 59  VGGKVLDGFEKYQHQYPLYSLQDAFSRAELVAFDERVRK-----EFPEVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ K  
Sbjct: 114 SISLAYENGILVAGATRGDGSIGENITENLKRVKDIPLTLPEPL--TITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N      G   +ANPRNAA+G LR+L+ + +    N       + S      Q ++
Sbjct: 172 FDAVNQLRQENGEAEFANPRNAAAGTLRQLDTSVV-AKRNLATFLYQEASPTSEATQEDV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+K+  LGF VN     A+T   +  +  ++   R  LPY+IDG+V KV+  + Q++LG 
Sbjct: 231 LEKLSQLGFSVNEKRVLASTIDQVWDFIEKVGQERDKLPYEIDGIVIKVNHLAAQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI+            +DIR  D V+V +AG++IP V+ ++ ++R  D      PS CP C
Sbjct: 351 YIR-----------EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSDEHL-DVPSQCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           QS ++   +        A RC   L C AQ +E L HF SRDA NI GLG   ++  F  
Sbjct: 399 QSDLLHFEDE------VALRCINPL-CPAQIMEGLAHFASRDAMNISGLGPAVVEKLFAK 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           +     +R  A I+ L             +  F + S   LY++I   ++ S E+ +F L
Sbjct: 452 D----LVRDVAGIYRLSIEDL------LQLENFKEKSANKLYNAIQASKSNSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + +    + AQ           +   +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKASRILLEKFHDIPSLAQA----------EQEEIASIDSLGMVIAKSLHSYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  ++ L +          +    + +  K +V TG L+ + R +A+E + +LGA 
Sbjct: 552 QEGTQILLKELEEAGVNLAYLGEKVAADAVLSGKTVVLTGKLETLTRTQAKEKLLRLGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD++I G + GSKL KAQ+LG++I +E     L
Sbjct: 612 VAGSVSKKTDLVIAGVDAGSKLAKAQELGIEIQDEAWLEQL 652


>gi|89069525|ref|ZP_01156869.1| DNA ligase, NAD-dependent [Oceanicola granulosus HTCC2516]
 gi|89044860|gb|EAR50950.1| DNA ligase, NAD-dependent [Oceanicola granulosus HTCC2516]
          Length = 739

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 284/723 (39%), Positives = 415/723 (57%), Gaps = 60/723 (8%)

Query: 41  PIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEK 100
           PI+ D+ YDALKRR  A+   FP+L R+   + P  ++G        KVTH +  LSL  
Sbjct: 30  PIMDDAAYDALKRRNAALEARFPELMRA---DSPTGQVGAAPAAGFGKVTHRVRMLSLLN 86

Query: 101 IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSG 160
            +   D+R F   + R+     D  + +T EPKIDG  +++RYE G+ V AA RGDG +G
Sbjct: 87  AFEEADIRDFDDGVRRYLGLAADAPLRYTAEPKIDGLSLSLRYEDGRLVQAATRGDGTTG 146

Query: 161 EDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220
           E+V+   R I  IP  L    P+++EVRGEVY+S  DF ALN        K +ANPRNAA
Sbjct: 147 ENVTDNARTIDDIPDRLEGA-PDVLEVRGEVYMSHADFAALNARQSEAAGKTFANPRNAA 205

Query: 221 SGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFH 279
           +G LR+L+P     R L FF +  G+ S   A+ Q   ++++  LGF VN   R  +   
Sbjct: 206 AGSLRQLDPEITRARPLRFFAYAWGELSAPLAETQMGAIERLGALGFQVNPLTRLCDGPD 265

Query: 280 GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRL 339
            ++++Y  +++ R+TL YDIDG+VYKVD+ +LQ +LG R+ +PRW  +HKF  + A TRL
Sbjct: 266 KMIAHYRAIEAQRATLGYDIDGVVYKVDDLALQSRLGFRSTTPRWATAHKFPAELAWTRL 325

Query: 340 LDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGD 399
             I+IQ+GRTG L+PVARL PV +GG +++NATLHNEDYI G  ASG  +RGG+DIR GD
Sbjct: 326 ERIEIQVGRTGALSPVARLTPVTVGGVVVSNATLHNEDYIAGRAASGDEIRGGKDIREGD 385

Query: 400 RVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT 459
            V V RAG+VIPKV D+ + +R  DA P+ FP  CP C S  VR+         A  RCT
Sbjct: 386 WVQVYRAGDVIPKVADVDLAQRPADAAPYVFPETCPECGSEAVREEG------DAVRRCT 439

Query: 460 GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT 519
           GGL C AQ +E+LKHFVSR AF+IEGLG +Q++ F+  E     I  PADIFTL+ R   
Sbjct: 440 GGLVCPAQAVEKLKHFVSRAAFDIEGLGAKQVEQFYHDE----WITEPADIFTLRDRYGP 495

Query: 520 ST-TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578
              T+++N  G+G+ S  NL+D+I +RR I+L R +F+LGIRHVG   A  LA+++ +++
Sbjct: 496 GKLTQLKNREGWGEKSAENLFDAIEERRTIALARLVFALGIRHVGEVAASDLARHFSTWE 555

Query: 579 NFAQEINN-------------------------------------------IIAHNNDDW 595
                ++                                            +       W
Sbjct: 556 ALVATVDAAAPAAHRVQAAEAALLAERAAARDEGRRARLAEVRDRVWAEPPLPEGARAAW 615

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
             ++ +  +G  +A+++V          +++ L   ++      +    S +  K +VFT
Sbjct: 616 DEIVGIEGIGATVARSLVLTMAQEAERASIDRLAAGLTIEPAE-QVATDSPVAGKTIVFT 674

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G+L+K+ R +A+     LGA VS  +S KTD+++ G   GSK +KA +LG++ ++E+ +L
Sbjct: 675 GSLEKMTRAEAKARAEALGAKVSGSVSAKTDLVVAGPGAGSKGKKAAELGIETIDEDAWL 734

Query: 716 FLL 718
            L+
Sbjct: 735 ALI 737


>gi|319939188|ref|ZP_08013551.1| DNA ligase [Streptococcus anginosus 1_2_62CV]
 gi|319811584|gb|EFW07860.1| DNA ligase [Streptococcus anginosus 1_2_62CV]
          Length = 652

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 205/701 (29%), Positives = 344/701 (49%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L + ++ +   YY    P + DSEYD L      +   +P+  +   P+ P ++
Sbjct: 2   KDRMLELVKLLNQYAHEYYTTDNPSVSDSEYDKLYHELLDLEKQYPEFVQ---PDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  RI +     D   + +  E KIDG 
Sbjct: 59  VGGKVLEGFEKYQHQYPLYSLQDAFSREELDVFDARIRK-----DFPDVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G  V  A RGDG  GE+++  ++ +  IP  L   +   + VRGE Y+ ++ 
Sbjct: 114 SISLMYENGILVAGATRGDGSVGENITENLKRVKDIPLKLPSEV--DMTVRGECYMPRSS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N      G   +ANPRNAA+G LR+L+   +    N       + S   A  Q  +
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAIV-AKRNLATFLYQEASPTSATSQEAV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L ++   GF VN     A++      +  E+   R  LPYDIDG+V KV++  +Q++LG 
Sbjct: 231 LNQLSKNGFSVNERHILAHSMDEAWQFIEEINQEREQLPYDIDGVVIKVNDLVVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R    +    P  CP C
Sbjct: 351 YI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRQSKEKL-EIPKNCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++   +        A RC     C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 NSELIHFEDE------VALRCINPR-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFDQ 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           +     +   A I+ L  +          +  F + S   LY +I   +  S E+ +F L
Sbjct: 452 Q----LVNDVAGIYRLTVKDL------LQLENFKEKSANKLYTAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ ++ L +++   +  A+               +  +  +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKASQILLEHFHDLEQLAKA----------KREEIAALDSLGMVIAESLSSYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  +  L +          +    + +    +V TG L+++ R +A++ +  LGA 
Sbjct: 552 QEGTHILLSELKEAGLNFTYLGEKVAADAALSGLTVVLTGKLERLNRSEAKKKLESLGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KT +++ G + GSKL KAQ+LG+ I +E     L
Sbjct: 612 VTNSVSKKTSLVVAGADAGSKLTKAQELGIIIRDEAWLESL 652


>gi|311233982|gb|ADP86836.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris RCH1]
          Length = 818

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 240/731 (32%), Positives = 374/731 (51%), Gaps = 58/731 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E+AR+  + L  ++  H+  YY+   P I D+EYDAL R    +   +P L    D   
Sbjct: 55  PEEARQRAAQLRADLERHNRLYYELDTPEISDAEYDALYRELVGLETRWPAL---RDEAS 111

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE+   L K  H++   SL+  ++ ++   FI R+Y       D    F  +PK
Sbjct: 112 PTQRVGGEVLEGLEKQAHTLRMYSLDNAFSRDEWGAFIQRMYNAL---PDAPSAFWCDPK 168

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YE G F  A  RG+G  GE V+A +R +  +P  L  +  P  IEVRGEV 
Sbjct: 169 MDGLALEVIYENGVFTSALTRGNGEVGEVVTAAMRTVRNLPLALRGDDVPRRIEVRGEVV 228

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS---- 247
           I+K DF  LN    A G K +ANPRNAA+G +R+L+ T    R L F  +G+G+      
Sbjct: 229 IAKADFEQLNARQSAAGGKLFANPRNAAAGSVRQLDTTVTAGRPLQFLAYGVGQVVLEGG 288

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                    ++ ++R  GF      R   +   + +YY  + + R +L  +IDG+V K+D
Sbjct: 289 TAPWTTHSGLMARLREWGFDTPPEGRLCASPDEVWAYYEALGARRESLAIEIDGVVAKLD 348

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   Q+ LG  AR+PRW ++ KF   QA TRL DI +Q+GRTG+LTPVA LEPV +GG  
Sbjct: 349 DTEAQEALGFTARAPRWALALKFPAMQARTRLDDIRVQVGRTGVLTPVAILEPVRVGGVE 408

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNED I+            + + +GD VLV+RAG+VIP+VV  +V ER  D +P
Sbjct: 409 VSRATLHNEDEIR-----------AKGLMLGDMVLVQRAGDVIPEVVRPLVEERTGDERP 457

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP C S VVR           AHRC   + C A + + + HFVS+   ++ G+G
Sbjct: 458 FVFPENCPECDSPVVRPQGE------VAHRCVNVM-CPAVRRQSIIHFVSKAGLDVRGVG 510

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ +            +  P  +F L +               G  S  N   +++  R 
Sbjct: 511 ERWVQQLVD----GGHVTSPVGLFLLTKLDLMRF------ERMGPTSAANFVTALDAART 560

Query: 548 -ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L R I +LGIRHVG + AR+LA  +       +           D  +L ++P +G 
Sbjct: 561 GATLVRLICALGIRHVGEQTARTLAANFTDLDALREA----------DAETLQQLPDIGP 610

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS-------PSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +A +I  F+ N  N+  +E L            P        +   ++  K++FTG+L 
Sbjct: 611 EVAGSIRSFFANEGNLELLERLRAIGLWPKRQDAPPASEGADAIVLPLQGLKVLFTGSLT 670

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ R +A++     GA +++ +++  D+++VG  PGSKLEKA++LG+++M E  F  +L 
Sbjct: 671 RVGRTEAEDMARAAGANIASSVTKSLDLLVVGGKPGSKLEKARKLGIRVMEEADFFAMLA 730

Query: 720 QYNTTLRIHDD 730
               ++   + 
Sbjct: 731 SGVASVDASEA 741


>gi|46580019|ref|YP_010827.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81404693|sp|Q72BM7|DNLJ_DESVH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|46449435|gb|AAS96086.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 799

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 240/731 (32%), Positives = 374/731 (51%), Gaps = 58/731 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E+AR+  + L  ++  H+  YY+   P I D+EYDAL R    +   +P L    D   
Sbjct: 36  PEEARQRAAQLRADLERHNRLYYELDTPEISDAEYDALYRELVGLETRWPAL---RDEAS 92

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE+   L K  H++   SL+  ++ ++   FI R+Y       D    F  +PK
Sbjct: 93  PTQRVGGEVLEGLEKQAHTLRMYSLDNAFSRDEWGAFIQRMYNAL---PDAPSAFWCDPK 149

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YE G F  A  RG+G  GE V+A +R +  +P  L  +  P  IEVRGEV 
Sbjct: 150 MDGLALEVIYENGVFTSALTRGNGEVGEVVTAAMRTVRNLPLALRGDDVPRRIEVRGEVV 209

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS---- 247
           I+K DF  LN    A G K +ANPRNAA+G +R+L+ T    R L F  +G+G+      
Sbjct: 210 IAKADFEQLNARQSAAGGKLFANPRNAAAGSVRQLDTTVTAGRPLQFLAYGVGQVVLEGG 269

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                    ++ ++R  GF      R   +   + +YY  + + R +L  +IDG+V K+D
Sbjct: 270 TAPWTTHSGLMARLREWGFDTPPEGRLCASPDEVWAYYEALGARRESLAIEIDGVVAKLD 329

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   Q+ LG  AR+PRW ++ KF   QA TRL DI +Q+GRTG+LTPVA LEPV +GG  
Sbjct: 330 DTEAQEALGFTARAPRWALALKFPAMQARTRLDDIRVQVGRTGVLTPVAILEPVRVGGVE 389

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNED I+            + + +GD VLV+RAG+VIP+VV  +V ER  D +P
Sbjct: 390 VSRATLHNEDEIR-----------AKGLMLGDMVLVQRAGDVIPEVVRPLVEERTGDERP 438

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP  CP C S VVR           AHRC   + C A + + + HFVS+   ++ G+G
Sbjct: 439 FVFPENCPECDSPVVRPQGE------VAHRCVNVM-CPAVRRQSIIHFVSKAGLDVRGVG 491

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ +            +  P  +F L +               G  S  N   +++  R 
Sbjct: 492 ERWVQQLVD----GGHVTSPVGLFLLTKLDLMRF------ERMGPTSAANFVTALDAART 541

Query: 548 -ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L R I +LGIRHVG + AR+LA  +       +           D  +L ++P +G 
Sbjct: 542 GATLVRLICALGIRHVGEQTARTLAANFTDLDALREA----------DAETLQQLPDIGP 591

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS-------PSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +A +I  F+ N  N+  +E L            P        +   ++  K++FTG+L 
Sbjct: 592 EVAGSIRSFFANEGNLELLERLRAIGLWPKRQDAPPASEGADAIVLPLQGLKVLFTGSLT 651

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ R +A++     GA +++ +++  D+++VG  PGSKLEKA++LG+++M E  F  +L 
Sbjct: 652 RVGRTEAEDMARAAGANIASSVTKSLDLLVVGGKPGSKLEKARKLGIRVMEEADFFAMLA 711

Query: 720 QYNTTLRIHDD 730
               ++   + 
Sbjct: 712 SGVASVDASEA 722


>gi|257387145|ref|YP_003176918.1| NAD-dependent DNA ligase LigA [Halomicrobium mukohataei DSM 12286]
 gi|257169452|gb|ACV47211.1| DNA ligase, NAD-dependent [Halomicrobium mukohataei DSM 12286]
          Length = 700

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 238/722 (32%), Positives = 367/722 (50%), Gaps = 46/722 (6%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  P+E  S ++AR++   L + I YHD  YY  + P+I D  YDAL  R +A+  AF  
Sbjct: 22  EFEPVEDFSDDEAREQAQRLREAIRYHDHRYYVLADPVIGDRAYDALFARLEALEDAFD- 80

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-D 123
               +    P  ++GGE    L  V H  P  S+++     ++R+F  R+         D
Sbjct: 81  ---LDREASPTQRVGGEPLDELASVEHVAPMGSIDQGGEASEVREFDRRVRDRLSDAGYD 137

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
             I +  EPK DG  + I YE G+F  AA RGDG  GEDV+  +R I ++P+ L  + P+
Sbjct: 138 GEIEYFCEPKFDGLSVEIVYEDGQFQRAATRGDGAVGEDVTENVRTIASVPQRLRGDYPD 197

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243
            + VRGEVY+ ++ F A N E I  G  P+ANPRNAA+G LR+L+P+             
Sbjct: 198 YLAVRGEVYMPRDAFTAYNSERIERGEDPFANPRNAAAGTLRQLDPSVTAERPLSIFLFG 257

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
              + +       + ++    G  V +     +     + Y +     R  L Y+IDG+V
Sbjct: 258 VLDASVDFDSHGALHERFPEWGLRVCDRTTVVDDIDAAIDYRDRQLDARDDLDYEIDGVV 317

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVD+    + LG  +R+PRW  ++KF  ++  T L DI +Q+GRTG LTPVA L+PV +
Sbjct: 318 IKVDDRRACELLGATSRAPRWAFAYKFPARKERTTLRDIAVQVGRTGRLTPVALLDPVEV 377

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  ++ A+LHN   I+ L               GD V +KRAG+VIP VV+++      
Sbjct: 378 GGVTVSRASLHNPAQIEELGVDA-----------GDTVRIKRAGDVIPDVVEVVE---SS 423

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
               FSFP  CP+C+S V         +      CTGGLAC AQ+   ++H+ SRDA +I
Sbjct: 424 GEATFSFPDRCPVCESAV--------ERDGPMAFCTGGLACPAQRERAIEHYASRDALDI 475

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EG+G++ +     +E     +  PAD++ L      +  ++  + G+G  S  NL   ++
Sbjct: 476 EGVGEKAVAKLLDAE----LVESPADLYDL------TVDELAALSGWGQRSAENLVAEVD 525

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             R   L  F+ +LGI  VG   AR+LA+ + S++   +           D  +   V  
Sbjct: 526 ASREPPLANFLVALGIHDVGTVTARNLAREFGSFEAIREA------GAAGDTDAFEAVDD 579

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           VG ++A++I EF++  RN   ++ LL  V P     E      ++ +  VFTG+L    R
Sbjct: 580 VGPVVAESICEFFRGERNEAVLDDLLDHVDPQPADTE--TGDALDGQTFVFTGSLAGYTR 637

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +AQ+ V   G   ++ +S  TD ++VGDNPG SK + A+  GV+ +++E F  LL    
Sbjct: 638 SEAQDLVEAHGGSATSSVSGNTDYLVVGDNPGQSKRDDAEAEGVETIDQESFEELLADRG 697

Query: 723 TT 724
             
Sbjct: 698 IE 699


>gi|317051097|ref|YP_004112213.1| DNA ligase, NAD-dependent [Desulfurispirillum indicum S5]
 gi|316946181|gb|ADU65657.1| DNA ligase, NAD-dependent [Desulfurispirillum indicum S5]
          Length = 660

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 244/708 (34%), Positives = 371/708 (52%), Gaps = 54/708 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + R+ +  L   +   D+ YY  + PI+ D EYD L R   A+   FP    +   
Sbjct: 1   MSAAE-RERIDQLTALLQKADEAYYTLADPIMGDGEYDGLYRELRALEARFPQYVHA--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IG  +        HS+P LSL   +   +L  F+ ++ R       + + FT+E
Sbjct: 57  DSPTRRIGERLEGGSRAFVHSVPMLSLGNTYEQAELEDFLRKVRR----DSGDHVRFTVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  +++ Y  G F  AA RGDG  GE++S  IR I ++P  L +     +E+RGEV
Sbjct: 113 PKIDGVAVSLHYRDGVFSVAATRGDGLQGEEISHNIRTIRSLP--LEIPAAGAMEIRGEV 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250
           YI +  F  +N + +  G   YANPRN A+G L+ L+P   +R  L  F + L       
Sbjct: 171 YIPRQAFERINQQRLEQGESLYANPRNLAAGSLKLLDPAQSSRRGLQIFCYSL---QGFP 227

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               ++ LQ +R  GFPV++ VRQ  +   +      ++  R  LP+DIDG V KVD+  
Sbjct: 228 HDSHFQCLQTLRDWGFPVSDLVRQCASDAEVWDAVQHIRQQRELLPFDIDGAVIKVDQLH 287

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L ++LG  A+ PR+ I++K+  +Q STRL DI  Q+GRTG++TPVA L+PV + G+ I+ 
Sbjct: 288 LHEELGTTAKIPRYAIAYKYEAQQVSTRLRDITFQVGRTGVITPVAELDPVLLAGSTISR 347

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN + ++            +DIR+GD+VL+++ G+VIPKVV  I+  R  DA     
Sbjct: 348 ATLHNFEELRR-----------KDIRIGDQVLIEKGGDVIPKVVKPIMALRSADASEVVP 396

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S +    N         H       C AQ+L  L HFVSRDA +I G+G++ 
Sbjct: 397 PENCPECGSPLHWSDNG-------VHLYCQNPLCPAQRLGALLHFVSRDAMDIAGMGEKV 449

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +  F         +    DI+ L   +  S      + GFG  S  NL  S+   +   L
Sbjct: 450 VQRFLDE----GILTDIPDIYHLVYERVAS------LDGFGVKSALNLQASVEASKAHPL 499

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ER +F+LGIRHVG + A+ LA+++ S +   Q               L  V  VG+I+A+
Sbjct: 500 ERVLFALGIRHVGKKTAQLLARHFGSMERLMQA----------SIEELTAVEEVGEIVAR 549

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +I  F + P ++  VEAL +             V+S +  + +VFTG L +  R + +E 
Sbjct: 550 SIYSFLREPASVALVEALKRSGLNMESSAPRAQVASGLSGRSVVFTGKLSR-PRKEYEEM 608

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
               GA V + +S   D ++ G++ GSKL+KA++LGV I++EE+F+ L
Sbjct: 609 AQLGGARVLSGVSGSLDYLVCGEDAGSKLDKARKLGVAIIDEEEFVRL 656


>gi|269119219|ref|YP_003307396.1| DNA ligase, NAD-dependent [Sebaldella termitidis ATCC 33386]
 gi|268613097|gb|ACZ07465.1| DNA ligase, NAD-dependent [Sebaldella termitidis ATCC 33386]
          Length = 669

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 216/712 (30%), Positives = 365/712 (51%), Gaps = 45/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +     +K    L+  I  +++ YY+ ++ ++ D EYD L +  ++I   +P+L  +   
Sbjct: 1   MEQTGIKKRYEELKDLIRKYNEHYYEKNESLVTDYEYDMLLKEMESIEKEYPELKDTV-- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                K+GG  +    KV H +P LSL   +NI ++  F  RI +   +  D  I + LE
Sbjct: 59  -SVTEKVGGRASGKFSKVVHKVPMLSLSNTYNIGEIEDFDKRIKKVIGE--DQKIEYVLE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  I+I+YE G+ V    RGDG  GEDV+  I  I +IP++L   +   +EVRGE+
Sbjct: 116 LKLDGLSISIQYENGRLVRGITRGDGEIGEDVTENIMQIDSIPQILKEPV--TLEVRGEI 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
            +  ++F  +N      G   +ANPRNAASG +R+L  +    R L+ +++ L       
Sbjct: 174 VLPISNFNKVNKMREEAGEDVFANPRNAASGTIRQLESSIVKDRGLDCYLYFLVNAQNYN 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + ++ +  LGF           F  +     +    R  L ++ DGLV K+DEF+
Sbjct: 234 LQKHSDSIKYLEKLGFKTTKVFEIYKDFSLLEKAIEKWHVERERLDFETDGLVIKLDEFA 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
               LG   +SPRW I++KF  ++A T+LLDI  Q+GRTG++TPVA LEPV + G+++  
Sbjct: 294 YYSALGSTTKSPRWAIAYKFPAEKAKTKLLDITFQVGRTGVITPVAELEPVELSGSVVRR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN D IK            +DI++GD V +++A E+IP+V++ +++ER    +    
Sbjct: 354 ASLHNFDEIKR-----------KDIKIGDFVYIEKAAEIIPQVIEPVISERTGSEKEIEM 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C  ++++  +        A +C    AC      ++++FVSRDA NI GLG++ 
Sbjct: 403 PESCPSCGHKLIKIED------QVAIKCINP-ACPEIIKRKIEYFVSRDAMNITGLGEKI 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++ F +       I+   DI++L   ++    ++E +   G  SV NL +SI + +    
Sbjct: 456 IEKFIE----LGKIKDIVDIYSLHEYRE----ELEKLEKMGKKSVDNLLNSIEESKKREY 507

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + ++SLGI  VG   A  LAK +L+  N            + +   L+ V  +GD +A+
Sbjct: 508 SKVLYSLGIPFVGKFTANLLAKEFLNIDNL----------KSKETEDLLEVKGIGDKVAK 557

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++  F  +  N   +  L +              + I+ K  + TG L+K  R + ++ +
Sbjct: 558 SVNMFLNDENNWNLISKLKETGLQFEEEEVFIEDNPIKGKTFLATGKLEKYTRDEIKDII 617

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF-LFLLQQY 721
              G    + +S+  + +I G+  GSKL+KA  LGV ++NEEQF    L++ 
Sbjct: 618 EAKGGKYLSGVSKNLNYLIAGEKAGSKLKKANDLGVIVLNEEQFEKEFLEEE 669


>gi|168483195|ref|ZP_02708147.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1873-00]
 gi|168492012|ref|ZP_02716155.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC0288-04]
 gi|221231854|ref|YP_002511006.1| DNA ligase [Streptococcus pneumoniae ATCC 700669]
 gi|225854613|ref|YP_002736125.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae JJA]
 gi|254781427|sp|B8ZPV9|DNLJ_STRPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781431|sp|C1CEA4|DNLJ_STRZJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|172043461|gb|EDT51507.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1873-00]
 gi|183573785|gb|EDT94313.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC0288-04]
 gi|220674314|emb|CAR68857.1| DNA ligase [Streptococcus pneumoniae ATCC 700669]
 gi|225722247|gb|ACO18100.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae JJA]
 gi|332201605|gb|EGJ15675.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA47368]
          Length = 652

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 213/700 (30%), Positives = 356/700 (50%), Gaps = 51/700 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++
Sbjct: 3   KRMNELVALLNRYATEYYTSDNPSVADSEYDRLYRELVELETAYPEQVLA---DSPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  
Sbjct: 60  GGKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q + L
Sbjct: 173 DQVNQVRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG  
Sbjct: 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DY
Sbjct: 292 VKAPKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I             +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C 
Sbjct: 352 I-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCN 399

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F   
Sbjct: 400 SDLLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF--- 449

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  ++  ADI+ LQ            + G  + S   LY +I   +  S E+ +F LG
Sbjct: 450 -AANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG+++++ L +Y+ S +N +Q           D   +  +  +G +IA+++  ++  
Sbjct: 503 IRHVGSKVSQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFAT 552

Query: 619 PRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             +   +  L +       +       + +    +V TG L++++R +A+  +  LGA V
Sbjct: 553 EGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 613 TGSISKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 652


>gi|15807063|ref|NP_295792.1| DNA ligase [Deinococcus radiodurans R1]
 gi|81550876|sp|Q9RSQ5|DNLJ_DEIRA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|6459863|gb|AAF11619.1|AE002043_4 DNA ligase [Deinococcus radiodurans R1]
          Length = 700

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 216/713 (30%), Positives = 348/713 (48%), Gaps = 48/713 (6%)

Query: 12  LSIE--QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           ++      R    +L  E++ H+  YY+   P I D EYD L R    +  A P+ A   
Sbjct: 7   MTDAPPDPRARYLALRDEVALHNRAYYEQDAPTIPDDEYDRLARELRELEAAHPEFA--- 63

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK-DDNSIFF 128
           D + P+  +GG  + +   VTH     SL+ +++ ++LR +  ++ R      D +   F
Sbjct: 64  DDHSPVQTVGGAPSSAFEPVTHPTQMTSLDNVFDDDELRDWQEKLARSLGLPLDTDDFTF 123

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T E KIDG  + + Y  G+  +AA RG+G  GE V+A +  IP IP+ L     E+ EVR
Sbjct: 124 TGELKIDGLSVNLYYLDGELQWAATRGNGRVGEIVTAQVLTIPDIPQKLEGLKGEL-EVR 182

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+S+ DF A N +   +G     NPRN A+G LR+ +P    TR+L   ++ +GK  
Sbjct: 183 GEVYLSRADFAAFNAQAEELGTPLLKNPRNGAAGALRQKDPEVTRTRHLKAILYAVGKRD 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            + A+ Q+E+L+ +   GFP +              Y+  M    +   +D DG V K+D
Sbjct: 243 GVPARTQWEVLEWLSAQGFPTSRSSEHLRGIAAAADYHARMIRAHADFEFDADGTVLKLD 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             S Q++ G  +R+PRW I++KF  ++  T L  I + +GRTG L P+A L P  I G+ 
Sbjct: 303 SLSQQEEAGFTSRAPRWAIAYKFPVEEVETVLESITVNVGRTGKLAPLAHLSPRLIEGST 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNEDYI+ +           D+RVGD VLV+++G VIP+++ ++ ++R  DA P
Sbjct: 363 VSKATLHNEDYIRDM-----------DLRVGDTVLVRKSGGVIPQIMRVLPDKRPADAAP 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F FP+ CP+C    VR          A   C    AC AQ  ER+++FVSR A ++ G+G
Sbjct: 412 FEFPTHCPVCGHEAVRAEG------DANTYCPNP-ACPAQSFERIRYFVSRGAMDVRGIG 464

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ +            I   A ++TL   Q         +   G+    N+   +   + 
Sbjct: 465 EKLVTQLLHE----GLIHDAAGLYTLSAEQLAG------LERGGEKKAGNILGQLEASKT 514

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R I +LG+ HVG   A++LA+ + + +                   +  VP +G I
Sbjct: 515 KPLWRLINALGMSHVGQRNAQALARAFGTLEGLLAATP----------EQIEAVPGLGGI 564

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IAQ++     +P     +  L                  +     V TG L +  R   +
Sbjct: 565 IAQSVTASLADPAMRDLIARLQASGVAPQAEEVTRTDQ-LSGLNFVLTGALSR-PREVIK 622

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +   G  V+  +++KT  ++ G++ GSKL +A +LGV +++E     LL +
Sbjct: 623 AELEAAGGRVTGSVTKKTSYLVAGEDAGSKLARAGELGVPVLDEAGLAALLAE 675


>gi|329936847|ref|ZP_08286526.1| NAD-dependent DNA ligase LigA [Streptomyces griseoaurantiacus M045]
 gi|329303772|gb|EGG47656.1| NAD-dependent DNA ligase LigA [Streptomyces griseoaurantiacus M045]
          Length = 731

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 217/763 (28%), Positives = 352/763 (46%), Gaps = 69/763 (9%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K+ Q   +      QAR+    L ++I  H   YY    P++ D+E+D L R    +   
Sbjct: 5   KQAQTTAV----PAQARERHVRLAEQIEEHRFRYYVKDAPVVSDAEFDRLLRELQELEER 60

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
            P+L     P+ P  K+ G        V H    LSL+  +N EDL  +  RI R    +
Sbjct: 61  HPEL---RTPDSPTQKVAGAYETEFTSVRHRERMLSLDNTFNDEDLAAWTERIARELGSQ 117

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
             +   F  E K+DG  + + YE G+   AA RGDG +GED++  +R I  IP  L    
Sbjct: 118 TYH---FLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLHGEE 174

Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P+++E+RGEV+     F  LN  ++  G KP+ANPRNAA+G LR+ +P    +R L+  
Sbjct: 175 VPDVVEIRGEVFFPMEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTASRPLHMV 234

Query: 240 VHGLGKTSEIFAKGQYEM-LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           VHG+G         +       +   G P +   R      G+  +       R ++ ++
Sbjct: 235 VHGIGALEGFEGMSRLSQAYDLLGSWGLPTSPYNRVVEDLAGVREFIAHYGENRHSVAHE 294

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG V K+DE  LQ +LG  +R+PRW I++K+A ++ +TRL++I + +GRTG +TP A++
Sbjct: 295 IDGAVVKLDEIPLQGRLGSTSRAPRWAIAYKYAPEEVNTRLVNIRVGVGRTGRVTPYAQV 354

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G+ +  ATLHN+D +K            + + +GD V++++AG+VIP+++  + 
Sbjct: 355 EPVTVAGSEVEFATLHNQDVVK-----------AKGVLIGDMVVLRKAGDVIPEILGPVA 403

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R    + F  P+ CP C + +         +     RC    AC AQ  ERL +   R
Sbjct: 404 DLRDGSEREFVMPADCPECGTPLRPM-----KEGDVDLRCPNSRACPAQLRERLFYLAGR 458

Query: 479 DAFNIEGLGKQQLDFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI------------- 524
            + +IE  G        +  +PA   +    D+F L   Q                    
Sbjct: 459 KSLDIEHFGYVAAAALTRPLEPAEPPLTDEGDLFDLTMEQLLPIKAYVLDQDSGLPKRDP 518

Query: 525 -----------ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                       N  G    +  ++ ++I   +   L R +  L IRHVG   A +LA+ 
Sbjct: 519 RTGEEKIATVFANQQGEPRKNAVSMLENIAAAKERPLARVLTGLSIRHVGPVAAEALARE 578

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S           +A              VG IIA ++ +++    +   +        
Sbjct: 579 FRSVDRIEAASEEELAATE----------GVGPIIAASLKQWFAEDWHREILRKWKAAGV 628

Query: 634 PSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                   E      +E   +V TGTL+   R  A+E +   GA V+  +S+KT  ++VG
Sbjct: 629 RMEEESTGEDEGPRPLEGLTVVVTGTLEHHTRDGAKEALQSRGAKVTGSVSKKTSFVVVG 688

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ---QYNTTLRIHDDD 731
           D+PGSK +KA QL V ++NE+ F  LL+   +    + +  ++
Sbjct: 689 DSPGSKYDKAMQLKVPVLNEDGFAVLLESGPEAAAEVALPTEE 731


>gi|295111571|emb|CBL28321.1| DNA ligase, NAD-dependent [Synergistetes bacterium SGP1]
          Length = 683

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 224/713 (31%), Positives = 352/713 (49%), Gaps = 65/713 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
              ++ L +E+++H   YY    P I D+EYDAL R    +  A PD  R   P+ P  +
Sbjct: 18  AARMAELYEELAHHARLYYDEDAPEIPDAEYDALVRELAELERAHPDRVR---PDSPTRR 74

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     KV H  P LSL+ +++  +L  F+ RI        ++   FT E KIDG 
Sbjct: 75  VGGTVLEGFEKVRHERPMLSLDNVFSAGELSSFLERIR---GDVPEDDWTFTCEMKIDGL 131

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++ YE G+FV  A RGDG  GEDV+  +R + T+P  L       +EVRGEV ++ + 
Sbjct: 132 AVSLLYEDGRFVRGATRGDGRVGEDVTENLRTLRTLPMRLKGAPAGRVEVRGEVLMTWDR 191

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256
           F ALN+    +G  P+ANPRNAA+G +R+L+      R L+ F++ L     +    Q +
Sbjct: 192 FNALNERREELGEPPFANPRNAAAGTMRQLDSRIVAERGLDAFLYYLVDAPSLGVTRQGD 251

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ +   G P+    R+  +     ++  E +  R +LPY  DG V K+D+ +L   LG
Sbjct: 252 ALEWLAERGLPIQPAWRRCASLAEAEAFIVEWQERRFSLPYVTDGAVVKLDDLTLWDGLG 311

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A +PRW +++K+  ++A TR+L ID+ +GRTG LTPVA LEPV + G ++  A LHNE
Sbjct: 312 ATAHAPRWAVAYKYPPEEARTRILSIDVSVGRTGALTPVANLEPVRLAGTVVQRAGLHNE 371

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+  D     +              ++A E+IP+VV +    R    +PF  P  CP 
Sbjct: 372 DEIRRKDVRVGDVVRV-----------RKAAEIIPEVVAVEKECRTGAERPFEMPERCPA 420

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S  VR  +       A  RC    +C AQ  E L++F SR   +I GLG++  +    
Sbjct: 421 CGSEAVRLPDE------AVLRCPNRASCPAQLKEGLRYFASRAGLDIRGLGERLAEQLID 474

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           S      ++  +D++ L      S      +   G+ S  NL  ++   ++  L   I +
Sbjct: 475 S----GRVKTLSDVYDLPEEDWAS------LDRMGEKSARNLMGALEASKDRPLSALIAA 524

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG  +A  LA+ + S    +                +  V  VG +IA ++  F+
Sbjct: 525 LGIRFVGRRVAELLAERFGSMDALSAASEA----------EIADVEGVGPVIASSVEAFF 574

Query: 617 QNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           ++  N+  VE L +  ++ S G    +  +E+E K  VFTG L  ++R +A+  V     
Sbjct: 575 RDEANLALVERLRERGLNFSSGDAAGHEGTELEGKSFVFTGELSSMKRAEAEALVRAH-- 632

Query: 676 VVSAILSR----------KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
                             KT  ++ G   GSK  +A++LGV I++EE FL ++
Sbjct: 633 --------GGSASGSVSSKTSFLVAGAGGGSKRRRAEELGVPIVSEEDFLRMI 677


>gi|322385709|ref|ZP_08059353.1| NAD-dependent DNA ligase LigA [Streptococcus cristatus ATCC 51100]
 gi|321270447|gb|EFX53363.1| NAD-dependent DNA ligase LigA [Streptococcus cristatus ATCC 51100]
          Length = 652

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 220/701 (31%), Positives = 360/701 (51%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVKLLNRYAHEYYTADRPSVSDSEYDRLYRELVELEEKYP---TDILPDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  RI +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELMAFDQRIRK-----EFPQVSYICELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N      G   +ANPRNAA+G LR+L+   +    N       + S   A  Q E+
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQAGSQEEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+  L F VN     A++  G+  +  ++   R +L Y+IDG+V KV++ ++Q++LG 
Sbjct: 231 LNKLASLDFSVNPIHFLADSIDGVWEFIEKIAQERDSLSYEIDGIVIKVNDLAVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  +      PS CP C
Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEAL-EIPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           +S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKVFDK 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  A I+ L      +      + GF + S   LY++I   +  S E+ +F L
Sbjct: 452 N----LVKDVAGIYRLSVEDLLT------LDGFKEKSANKLYNAIQASKENSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + +      +Q               +  +  +G +IAQ++  +++
Sbjct: 502 GIRHVGSKASRILMEKFHDMIKLSQASQ----------EEISSIDSLGTVIAQSLHSYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +  L +          +    + +  K +V TG LQK+ R++A+E +  LGA 
Sbjct: 552 QEGSQLLLRELQEAGVNLDYLGEKVAADAALAGKTVVLTGKLQKLTRNQAKEKLLSLGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 612 VAGSVSKKTDLVVAGTDAGSKLTKAQELGIEIRDEDWLDSL 652


>gi|332200505|gb|EGJ14577.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA41317]
          Length = 648

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 212/698 (30%), Positives = 355/698 (50%), Gaps = 51/698 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++GG
Sbjct: 1   MNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           ++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  I+
Sbjct: 58  KVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLSIS 112

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F  
Sbjct: 113 LTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASFDQ 170

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q + L+ 
Sbjct: 171 VNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGLKY 229

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   +
Sbjct: 230 LEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVK 289

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI 
Sbjct: 290 APKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI- 348

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
                       +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S 
Sbjct: 349 ----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCNSD 397

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F     
Sbjct: 398 LLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----A 446

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
           A  ++  ADI+ LQ            + G  + S   LY +I   +  S E+ +F LGIR
Sbjct: 447 ANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIR 500

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           HVG+++++ L +Y+ S +N +Q           D   +  +  +G +IA+++  ++    
Sbjct: 501 HVGSKVSQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFATEG 550

Query: 621 NICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
           +   +  L +       +       + +    +V TG L++++R +A+  +  LGA V+ 
Sbjct: 551 SEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTG 610

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 611 SISKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 648


>gi|87123447|ref|ZP_01079298.1| BRCT domain:NAD-dependent DNA ligase N-terminus [Synechococcus sp.
           RS9917]
 gi|86169167|gb|EAQ70423.1| BRCT domain:NAD-dependent DNA ligase N-terminus [Synechococcus sp.
           RS9917]
          Length = 694

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 213/724 (29%), Positives = 339/724 (46%), Gaps = 61/724 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +    L   ++     YY    P + D  YD L R    +  A P L     P+ P  ++
Sbjct: 7   ERARELRTLLNRAAHAYYVLDAPEMEDPVYDRLYRELVELEQADPSLC---SPDSPTQRV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NSIFFTLEPK 133
           GG        V H I  LSL+  +NI +L  +  R+ R   ++        ++    E K
Sbjct: 64  GGPPAAGFQSVRHRIGLLSLDNAFNIGELEAWYARLLRVLDREPGAGAPLPALPMVGELK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVY 192
           IDG  + + YE+G  V AA RGDG  GE ++A +R I  +P  L     PE +EVRGE +
Sbjct: 124 IDGNALALSYEQGVLVRAATRGDGEQGEAITANVRTIGAVPLRLQLEQPPEWLEVRGEAF 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL-------- 243
           I    F A+N E  A G   +ANPRNA +G LR+L+P     R L+FF + L        
Sbjct: 184 IPDGTFSAINAEREARGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPEGWQA 243

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G         Q+E LQ ++  GF VN       +   +  ++ + +  R  LPY  DG+V
Sbjct: 244 GAGDPARPSSQWESLQWLKRAGFKVNPNAELLPSLAAVEGFFAQWQEGRKALPYATDGVV 303

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+++  LQ   G   ++PRW I+ K+  ++A ++LL +  Q+GRTG++TPVA  E V +
Sbjct: 304 VKLNDLRLQDAAGFTQKAPRWAIALKYPAEEAPSKLLRLTCQVGRTGVVTPVAEFEAVPL 363

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ ATLHN D +  L           D+   D ++V++AGE+IP+VV ++   R  
Sbjct: 364 AGTSVSRATLHNADRLAEL-----------DLHADDTIVVRKAGEIIPEVVRVLTELRPA 412

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +A     P  CP C S +VR+         AA RC    +C A     L+H+VS+ A ++
Sbjct: 413 NAARLELPHTCPECGSELVREEGE------AATRCVNS-SCPAILRGALRHWVSKGALDV 465

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG + ++           +   AD++ L      S      +   G  S  NL  ++ 
Sbjct: 466 DGLGSKLIEQLVDR----GLVSSIADLYRLDGALLAS------LERMGQKSADNLVAALA 515

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +     R ++ LGI HVG   A++                ++ A   D   ++  V  
Sbjct: 516 ASKAQPWHRQLYGLGIHHVGEVNAKA-------LAAAFPSAADLAAAAADHADAITAVFG 568

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--------NVSSEIENKKLVFT 655
           +G  IAQ++ +++    N+  +  L +         E+          S+++  +  V T
Sbjct: 569 IGAEIAQSLQQWFATAANLNLLAELERLGFSLSSSEEELQAAAERSAASAQLSGQTFVLT 628

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL  + R +A+E +   G  VS  +S+KT  ++ G+  GSKL KA+ LGV +++E    
Sbjct: 629 GTLPSLSRSQAKELIEAAGGKVSGSVSKKTSYVVAGEEAGSKLSKAESLGVPVLDEAGLQ 688

Query: 716 FLLQ 719
            LL 
Sbjct: 689 ALLA 692


>gi|327541957|gb|EGF28460.1| NAD-dependent DNA ligase LigA [Rhodopirellula baltica WH47]
          Length = 754

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 221/727 (30%), Positives = 365/727 (50%), Gaps = 64/727 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +     +  L  EI+ H+  YY  + P I D +YD L      + + +P+L     P+ P
Sbjct: 58  DSIASRVQQLVDEINRHNRLYYDDAAPEITDLQYDQLLAELTQLENEYPEL---RQPDSP 114

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +GG++   L +V H +P LS++  ++ E+L   + RI +     +  S+ +T+E KI
Sbjct: 115 TQLVGGDVVDQLVQVPHRVPMLSIDNTYSREELAAAMERIEKSL---EGESVAWTMEYKI 171

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-----------SLNIPE 183
           DG   +IRYE G+   A  RG+G  G+D++  +R I  +PR +             N+PE
Sbjct: 172 DGVAGSIRYENGELTLALTRGNGQVGDDITHNVRTIRELPRSIADAALAHPEVADGNVPE 231

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHG 242
           ++EVRGE+Y++  D   LN      G +P+ N RN  +G +R L+P    +R + FF HG
Sbjct: 232 VLEVRGELYMTDADLADLNVRQTEAGHEPFKNTRNVTAGTIRLLDPKIAASRNIRFFCHG 291

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G+   + A      L+ ++ LG P+   V +       +    +++     LP++IDG+
Sbjct: 292 SGELVGVQASDHMTFLEHVQALGIPIAPDVVRFENKENALQAIAKLELEMPDLPFEIDGI 351

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V+KVD F  +++LG R++SPRW+I++KF   +A T L  ID+Q+G+TG +TPVA L PV+
Sbjct: 352 VFKVDSFEQREKLGVRSKSPRWVIAYKFERYEAITTLEAIDVQVGKTGTITPVAYLTPVD 411

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           I    ++ A+LHN D I+ L           D+RVGD V+V++AG++IPKVV +  + R 
Sbjct: 412 IADTTVSRASLHNADEIERL-----------DVRVGDTVVVEKAGKIIPKVVRVEKHART 460

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
                F FP+ CP C   + RD            RCT   AC AQ  +RL +F SR   +
Sbjct: 461 KPLPKFEFPTHCPQCDEVLTRDEG------GVYIRCTNP-ACPAQLRQRLVYFGSRTGMD 513

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ---------RRQQTSTTKIENILGFGDV 533
           I+GLG++ +D   + E     +   AD++ L           R +         + FG  
Sbjct: 514 IDGLGEEVVDLLLQKE----LVENYADLYRLNVDELAELTWPRLRKGKGDEMIEVQFGRK 569

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           +  +L   IN+ R   L R + S+ IRH+G  +A+ +   + +                 
Sbjct: 570 NAESLVAGINESRTRGLARVLSSISIRHIGPRVAKLITAKFWNLDLLRSA---------- 619

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-----KNVSSEIE 648
               L  +  +GD IA+++V+F  +      +  L                 +  +  + 
Sbjct: 620 KAEDLAAIHEIGDRIAESLVKFIHSESGSQTLSDLDAVGVTMSEPEPVATPDEEANLPLA 679

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTLQ   R + +  + +LG   ++ +S+KTD +I G+  GSKL KA+ LGV++
Sbjct: 680 GKNIVATGTLQHYTRDEIKARIEELGGRAASSVSKKTDFLIAGEKAGSKLTKAESLGVEV 739

Query: 709 MNEEQFL 715
           ++E+ F 
Sbjct: 740 LSEDDFR 746


>gi|153956079|ref|YP_001396844.1| LigA1 [Clostridium kluyveri DSM 555]
 gi|219856414|ref|YP_002473536.1| hypothetical protein CKR_3071 [Clostridium kluyveri NBRC 12016]
 gi|190359246|sp|A5N2X7|DNLJ_CLOK5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781297|sp|B9DWM9|DNLJ_CLOK1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146348937|gb|EDK35473.1| LigA1 [Clostridium kluyveri DSM 555]
 gi|219570138|dbj|BAH08122.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 663

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 210/706 (29%), Positives = 357/706 (50%), Gaps = 46/706 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +K +  L + I YH+D YY    P I D EYD L      + ++ P+       + P 
Sbjct: 2   DIKKRIDELRKIIEYHNDKYYNQDDPEITDYEYDKLYVELRNLENSHPEYKIQ---SSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+GG +   L KV H IP +SL+ +++ E++  F+ +I             F +E KID
Sbjct: 59  QKVGGTVKRELRKVKHDIPVVSLQDVFSKEEVYSFVEKITSEVTYPK-----FVVEKKID 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + +RY  G+   A  RGDG  GE V   I  + +IP+ +   +  + E+RGE+Y++ 
Sbjct: 114 GLTVVLRYYNGELKEAITRGDGSIGESVFENILQVKSIPKHIPSKLNYL-EIRGEIYMTN 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQ 254
            +F+ +N++   +G K + NPRN A+G +R+L+ +    R L+ F+  L  +     +  
Sbjct: 173 ENFIKVNEKQEEIGGKIFKNPRNLAAGTIRQLDTSIVKDRNLDIFIFNLEISEGKKFETH 232

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L+ +   GF V+   +   T   + +   +++  R  L Y IDG V KVD  + +  
Sbjct: 233 SETLEWLSNQGFDVSPNFKICETADEVWNAILDIEESRWDLGYSIDGAVVKVDNLNDRIS 292

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++ P+W ++ K+  +Q  T + DI +Q+ RTG L P+A L PV +    I+ ATLH
Sbjct: 293 LGMTSKVPKWTVAFKYPPEQKETVIEDIIVQVSRTGRLNPLALLRPVILANTTISKATLH 352

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N+D+I             +DIR+GD V++++AG++IP+++  I  +R   A+ +  P  C
Sbjct: 353 NQDFIDS-----------KDIRIGDTVIIQKAGDIIPEIIRSIPEKRPDWAKKYIIPDVC 401

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S+ +R+ +          RC+    C AQ   ++ +FVS+DA NI G G+  ++  
Sbjct: 402 PVCNSKTIREPD------GVDTRCSNP-DCEAQSFRKIGYFVSKDAMNIVGFGQNTVEAL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            K       I+  +DI+ L+  +     K        + SV NL ++I   ++  ++R I
Sbjct: 455 MKD----GYIKKISDIYILKNYKDALIEKGII---GKEKSVNNLLNAIELSKDNDIDRLI 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             LGIR+VG + A+ LA  + S    A             +  LI +   G      I+E
Sbjct: 508 TGLGIRNVGKQSAKILAGNFKSMDELAGA----------AYEQLIELEDFGPTTVPDILE 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           F+ +   I  ++ L +    +I +  +K + +    K  V TGTL  ++R +A E +   
Sbjct: 558 FFNSNAYIELIKKLKEAGVNTISKTLQKKIDNRFLGKTFVITGTLPTMKRDEAAEIIQSF 617

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G  VS  +S++T  ++ G+  GSKL KAQQLG+ I+ EE    +++
Sbjct: 618 GGKVSGSVSKRTSFVLAGEEAGSKLTKAQQLGISIITEEDLKDMIK 663


>gi|187251632|ref|YP_001876114.1| DNA ligase, NAD-dependent [Elusimicrobium minutum Pei191]
 gi|254781329|sp|B2KE31|DNLJ_ELUMP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|186971792|gb|ACC98777.1| DNA ligase, NAD-dependent [Elusimicrobium minutum Pei191]
          Length = 656

 Score =  492 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 235/707 (33%), Positives = 357/707 (50%), Gaps = 52/707 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ +KE+  L  +I+YH++ YY      I D+EYD L  R   +    PD A   D   
Sbjct: 1   MDKIKKEIEDLRSKINYHNNLYYNLDNAEISDAEYDGLYARLKFLEAMNPDYA---DAAS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  KIGG  +     VTH+   +SL+  ++ E++ ++  R  +        +     E K
Sbjct: 58  PTQKIGGAASRVFTSVTHASQMMSLDNTYSSEEVLRWHERCVKSLG---HGNFEMVAEAK 114

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG   ++ YE G    AA RGDG +GEDV+A I+ I TIP    ++    IE+RGE+YI
Sbjct: 115 IDGVSCSLTYEGGVLTVAATRGDGKTGEDVTANIKTIKTIPHN--ISFKNKIEIRGEIYI 172

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAK 252
            K D   LN+     G   +AN RNAA+G +R+ N     +R L FF H  G    +  K
Sbjct: 173 EKADLKRLNEIQENEGENIFANTRNAAAGSIRQKNAEISASRPLKFFAHSFGYGD-VDVK 231

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
           G  E +   +  GF V     +    + I S+Y   + +R+ LPYD+DG+V K++ F+ Q
Sbjct: 232 GFAEFMDLCKSWGFSVTPNRIRTADINEITSFYKRFEELRAGLPYDVDGIVVKINSFAEQ 291

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K LG  A+SPRW I+ K+   Q  T +  I   +GRTGI+TPVA LEPV + G +I+NAT
Sbjct: 292 KILGVTAKSPRWAIAFKYKPPQGKTVVNKIIFSVGRTGIITPVAELEPVAVAGVIISNAT 351

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D IK L            ++ GD V+V+RAGEVIPK++++    +         P 
Sbjct: 352 LHNFDEIKRL-----------GVKEGDTVIVERAGEVIPKILNV---VKDGGGNEVKAPK 397

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S+V R  +        A RC    AC AQ    L HFVSR A +I+G G+  ++
Sbjct: 398 NCPSCGSKVYRYEDE------VAIRCINP-ACPAQIKGHLLHFVSRAAMDIDGFGEAVVE 450

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              + +     ++  ADI+ L+  Q  +      +  F D  V NL  ++   +  SL R
Sbjct: 451 QVVEKK----YVKDFADIYNLKAEQLLT------LDLFKDKKVNNLLLAVEASKKRSLSR 500

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +++ GIRHVG +    LA ++   +N                    ++  +G ++ Q++
Sbjct: 501 VLYAFGIRHVGQKTGEILANHFEDIENMLAA----------SLEDFQKINEIGPVVGQSV 550

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            +F Q+ +    +  L            +   +E+  K LVFTG L  + R +A+     
Sbjct: 551 YDFMQSAKGKEEIARLKTAGVNFTQPKVQLAGNELLGKTLVFTGEL-NMPRTQAEALAKA 609

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G  VS  +S KT  ++ G + GSKL KAQ LGV +++EE+FL L++
Sbjct: 610 HGGKVSGSVSSKTSYVVAGADAGSKLTKAQSLGVSVISEEEFLNLIK 656


>gi|111658008|ref|ZP_01408712.1| hypothetical protein SpneT_02000805 [Streptococcus pneumoniae
           TIGR4]
          Length = 648

 Score =  492 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 212/698 (30%), Positives = 355/698 (50%), Gaps = 51/698 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++GG
Sbjct: 1   MNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           ++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  I+
Sbjct: 58  KVLDGFEKYSHQYPLYSLQDAFSCEELDAFDARVRKEVAHP-----TYICELKIDGLSIS 112

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F  
Sbjct: 113 LTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASFDQ 170

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q + L+ 
Sbjct: 171 VNQARQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGLKY 229

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   +
Sbjct: 230 LEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVK 289

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI 
Sbjct: 290 APKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI- 348

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
                       +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S 
Sbjct: 349 ----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCNSD 397

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F     
Sbjct: 398 LLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----A 446

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
           A  ++  ADI+ LQ            + G  + S   LY +I   +  S E+ +F LGIR
Sbjct: 447 ANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIR 500

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           HVG+++++ L +Y+ S +N +Q           D   +  +  +G +IA+++  ++    
Sbjct: 501 HVGSKVSQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFATEG 550

Query: 621 NICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
           +   +  L +       +       + +    +V TG L++++R +A+  +  LGA V+ 
Sbjct: 551 SEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTG 610

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 611 SISKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 648


>gi|167627564|ref|YP_001678064.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|190359258|sp|B0TY02|DNLJ_FRAP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|167597565|gb|ABZ87563.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 678

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 262/718 (36%), Positives = 397/718 (55%), Gaps = 54/718 (7%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I  + L+  Q +  +  L + +      Y+   KP+I DS+YD L R    +    P L 
Sbjct: 9   IDYKTLTKAQLKSYIDDLAEYLGEQSYLYHTIDKPVITDSDYDKLFRLLQDLVDDNPQLK 68

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
            S   N  L+++GGE+      + H     SL  ++++E+LR F  +I           I
Sbjct: 69  PS---NSVLDRVGGEILAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDI 117

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEII 185
               EPK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P    + N PE +
Sbjct: 118 ELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEEL 177

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244
           EVRGE+ + K  FL+LN+ M     K +ANPRNAA+G +R L+      R L  + +G+G
Sbjct: 178 EVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIG 237

Query: 245 KT--SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
                 +  + Q+E++  ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGL
Sbjct: 238 YFSKDFVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEVYHHKMSHQRADLAYDIDGL 297

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V+KV+   LQ  +G  AR P+W I++KF  ++  + +L+++ Q+GRTG +TPVARL+PV 
Sbjct: 298 VFKVNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVA 357

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG +++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV  +   R 
Sbjct: 358 VGGVIVSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRK 406

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           PDAQ    P+ CP+C S +    +       A +RCTGG  C AQ  ERLKHFVSR A +
Sbjct: 407 PDAQMVEMPTNCPVCDSAIENIND------QAIYRCTGGWHCQAQTTERLKHFVSRKAMD 460

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+ LG + ++        A  I+ PADI+ L   Q T       +   G  S  N+ DSI
Sbjct: 461 IDKLGAKLIEQLV----AADLIKYPADIYKLNFEQLTG------LERMGAKSSQNVLDSI 510

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K +  SL RFIF++GI+ VG   + +LA ++ S ++F +            +  LI + 
Sbjct: 511 TKSKEPSLARFIFAIGIKDVGEVSSEALANHFGSLESFREA----------KFEQLIEIN 560

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNV-SSEIENKKLVFTGTLQK 660
            +G+IIA+ IV F+Q+  NI  V+ LL   ++       +   +    NK +V TGT + 
Sbjct: 561 DIGEIIAKNIVSFWQDSLNIQIVDELLGNSINIQNPEKIEQAHNESFTNKTIVITGTFEN 620

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             R +  + +  +GA V++ +S+KTD++I GDN GSKL KAQ LGV+++ EE    LL
Sbjct: 621 YNRTELTQLLKSMGAKVTSSVSKKTDMVICGDNAGSKLTKAQDLGVEVIFEEDLQNLL 678


>gi|313891779|ref|ZP_07825384.1| DNA ligase (NAD+) [Dialister microaerophilus UPII 345-E]
 gi|313119773|gb|EFR42960.1| DNA ligase (NAD+) [Dialister microaerophilus UPII 345-E]
          Length = 666

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/709 (31%), Positives = 371/709 (52%), Gaps = 46/709 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   +   ++  L +E+ YH   YY   KP I D E+D + R        +P+L     P
Sbjct: 1   MITNEIISKVKKLREELRYHSYLYYVLDKPEISDFEFDKMYRELVDFESKYPELI---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG+      KV    P LSL   +N ++L +F   +         ++I +  E
Sbjct: 58  DSPTQRVGGKATGDFKKVEFKKPMLSLSNAFNGKELIEFDKGVKETLN---TDNIEYITE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + + YE+GK +    RGDG  GEDV+A ++ I +IP  +    P I E+RGEV
Sbjct: 115 LKIDGLSMNLIYEEGKLIRGLTRGDGKVGEDVTANVKTIKSIPLYIENAPPYI-EIRGEV 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ ++ F++LN++  A G  P+AN RNAASG +R+L+P    +R L+FF + +G+T  I 
Sbjct: 174 FMPRSSFVSLNEKRDAAGIMPFANCRNAASGSIRQLDPNVTASRNLDFFAYSVGETEGIE 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q  +L  ++   F VN   ++ N+   ++   NE +  R  L YD DG+V KV++F+
Sbjct: 234 IKNQESLLNLLKKFHFKVNPNYKKINSIEKVIEIINEWQEKRHNLGYDTDGMVVKVNDFA 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q  LG  ++ P+W I++K+  ++  T + +I + +GRTG+LTP A L+PV I G ++  
Sbjct: 294 QQNILGATSKDPKWAIAYKYPPEEEETVVENIIVTMGRTGVLTPSADLKPVQIAGTVVKR 353

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN ++I+            +DIR+GD V + ++GE+IP++  ++ N+R    + F  
Sbjct: 354 ATLHNMNFIE-----------EKDIRIGDIVKIYKSGEIIPEISVVLKNKRTGKEKKFIM 402

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C+ ++ R           A+RC     C     E L HF SR+A NIEGLG   
Sbjct: 403 PSECPLCKHKIYRTEGE------VAYRCINP-DCGGVIRENLIHFASRNAMNIEGLGPAV 455

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D           I   AD + L++           I   G+ S  NL  SI   +N  L
Sbjct: 456 IDGLLAYN----LIENIADFYELRKDDII------QIERMGEKSAKNLLISIENSKNRGL 505

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+F+LGIRH+G + +  +++ +                      S+  V  +G+I A+
Sbjct: 506 SKFLFALGIRHLGEKGSELISEKFKDIDVLMNA----------SVDSIKSVSGIGNITAE 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            I ++++N +N   +E L            K+  +  +   +V TG L  I R +A E +
Sbjct: 556 HIYKYFKNEKNKKIIERLKDHGILMKLNERKSEGNAFKGHNVVLTGKLSNIGRREAGEII 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             LG  + + +++ T ++IVG+N GSKLEKA++ G+KI+NE  FL ++ 
Sbjct: 616 KALGGNLQSTVTKTTTLVIVGENAGSKLEKAREKGIKIINENDFLKIIN 664


>gi|329116783|ref|ZP_08245500.1| DNA ligase (NAD+) [Streptococcus parauberis NCFD 2020]
 gi|326907188|gb|EGE54102.1| DNA ligase (NAD+) [Streptococcus parauberis NCFD 2020]
          Length = 654

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 209/701 (29%), Positives = 353/701 (50%), Gaps = 50/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K +  L   ++ +   YY    P + D +YD L      +   +P+ A     + P   
Sbjct: 2   EKRIKELTDLLNQYRLEYYTNDSPSVSDQDYDRLYHELVQLEEEYPEYALK---DSPTQA 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H+ P  SL+  ++ E+L  F  R+       +  S  +  E KIDG 
Sbjct: 59  VGGLVLTGFEKYQHAYPLYSLQDAFSPEELYSFDRRVK-----AEFPSAEYVAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y++GK V  A RGDG  GE+++  I+ I  IP  L   I   I VRGE Y+S+  
Sbjct: 114 SISLNYQEGKLVTGATRGDGSIGENITENIKRIKDIPHQLDQAI--DITVRGEAYMSRKS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N E    G   +ANPRNAA+G LR+L+ + +            + S      Q  +
Sbjct: 172 FQQINLERQENGETEFANPRNAAAGTLRQLDTSIV-AKRELASFLYQEASPTDELSQELV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+K+  LGF VN       +   I  +   ++  R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LEKLDNLGFSVNPRRLITQSMDEIWDFIQAIEIERDQLSYDIDGIVIKVNSLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW +++KF  ++    +  +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TIKAPRWAVAYKFQAEEKEAEIRSVDWTVGRTGVVTPTANLTPVKLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI+            +DIR+GD V+V +AG++IP V+ ++ ++R  D++P   PS CP C
Sbjct: 351 YIE-----------HKDIRIGDTVIVYKAGDIIPAVLRVVTDKRRDDSEPMPIPSLCPSC 399

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           QS ++   +        A RC   L C       L+HF SR+A NI GLG   ++  +  
Sbjct: 400 QSELIHFEDE------VALRCINPL-CPNLIQRSLEHFASRNAMNISGLGPAIVEKLYS- 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  I   ADI+ L   Q  +      + G  + S   L  +I   +  S ++ +F L
Sbjct: 452 ---ANLIHDVADIYKLNLEQLLA------LEGIKEKSAEKLLTAITNSKKNSADKLLFGL 502

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA+ +R L + +   ++  +           +   + ++  +G +IA++I  +++
Sbjct: 503 GIRHVGAKASRILLEEFGDIESLVEA----------NQEEISQIDGLGTVIAKSIARYFE 552

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  +  L            + + ++++    +V TG L+++ R++A+  +  LGA 
Sbjct: 553 KAEAQLLLSELKSAGLNLSYLGKKIDKTAKLFGMTVVLTGKLEQLTRNEAKAKLESLGAK 612

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V++ +S+KTD+++ G + GSKL+KA  LG++I +E+  + L
Sbjct: 613 VTSSVSKKTDLLVAGSDAGSKLDKASTLGIRIEDEDWLVNL 653


>gi|222152820|ref|YP_002561997.1| NAD-dependent DNA ligase LigA [Streptococcus uberis 0140J]
 gi|254781430|sp|B9DRS2|DNLJ_STRU0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222113633|emb|CAR41520.1| DNA ligase [Streptococcus uberis 0140J]
          Length = 652

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 217/701 (30%), Positives = 355/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K +  L   ++ +   YY    P + D EYD L      +   +P+  +    + P   
Sbjct: 2   EKRIRELTSLLNQYRQEYYTNDNPSVSDQEYDKLYHELIDLEKEYPEYIQK---DSPSQA 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  R+       +     +  E KIDG 
Sbjct: 59  VGGLILSGFEKYQHPFPLYSLQDAFSKEELEAFDRRVK-----SEFPKAEYIAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G+ V  A RGDG  GE+++  I+ I  IP  L  +I   I VRGE Y+S++ 
Sbjct: 114 SISLSYESGRLVTGATRGDGSVGENITENIKKIKDIPHQLKDDI--TITVRGEAYMSRSS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N E    G   +ANPRNAA+G LR+L+ + +            + S   A+ Q ++
Sbjct: 172 FQKINLERQENGETEFANPRNAAAGTLRQLDTSIV-ARRELASFLYQEASPSQAQNQEDV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ +  LGF VN     +++   I S+  +++  R  L YDIDG+V KV+  ++Q++LG 
Sbjct: 231 LENLEALGFSVNKKRLISSSMEDIWSFITQVEDERDNLSYDIDGIVIKVNNLAMQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++    +L +D  IGRTG++TP A L P+ + G  ++ ATLHN D
Sbjct: 291 TIKAPRWAIAYKFPAEEKEAEILSVDWTIGRTGVVTPTANLTPIQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++  +R     P   P  CP C
Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVDTKR-DQQLPMPIPKVCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           QS +V            A RC   L C +     L+HF SR+A NI GLG   ++  F +
Sbjct: 399 QSDLVHLEAE------VALRCINPL-CPSLIQRSLEHFASRNAMNIAGLGPAIVEKLFSA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           +     I   ADI+ L      S   +  + G  + S   L D+I   ++ S ++ +F L
Sbjct: 452 Q----LIHDVADIYQL------SLDSLLTLEGIKEKSAQKLLDAIQSSKSNSADKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVGA+ +R L + + S +N  +           D  S+ ++  +G +IA +I  ++ 
Sbjct: 502 GIRHVGAKASRLLLETFGSVENLMKA----------DDQSIAQIDGLGHVIANSIKNYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  +  L  +         + + S+++    +V TG L+++ R +A+E +  +GA 
Sbjct: 552 KEEAKQLIFELKDKGVNLDYLGKKVDTSAQLFGLTVVLTGKLEEMTRQEAKEKLENMGAK 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD++I G + GSKL+KA+ LG+ + +E   L L
Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLDKARSLGIDVKDENWLLQL 652


>gi|32476578|ref|NP_869572.1| DNA ligase [Rhodopirellula baltica SH 1]
 gi|81659473|sp|Q7UKD1|DNLJ_RHOBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|32447124|emb|CAD76950.1| DNA ligase [Rhodopirellula baltica SH 1]
          Length = 706

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 224/727 (30%), Positives = 365/727 (50%), Gaps = 64/727 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +     +  L  EI+ H+  YY  + P I D +YD L      + +  PDL R   P+ P
Sbjct: 10  DSIASRVQQLVDEINRHNRLYYDDAAPEITDLQYDQLLAELTQLENDHPDLRR---PDSP 66

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +GG++   L +V H +P LS++  ++ E+L   + RI +     +  S+ +T+E KI
Sbjct: 67  TQLVGGDVVDQLVQVPHRVPMLSIDNTYSREELAAAMERIEKSL---EGESVAWTMEYKI 123

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-----------SLNIPE 183
           DG   +IRYE G+   A  RG+G  G+D++  +R I  +PR +             N+PE
Sbjct: 124 DGVAGSIRYENGELTLALTRGNGQVGDDITHNVRTIRELPRSIADAALAHPEVAGGNVPE 183

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHG 242
           ++EVRGE+Y++  D   LN      G +P+ N RN  +G +R L+P    +R + FF HG
Sbjct: 184 VLEVRGELYMTDADLADLNVRQTDAGHEPFKNTRNVTAGTIRLLDPKIAASRNIRFFCHG 243

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G+   + A      LQ ++ LG P+   V +       +    +++     LP++IDG+
Sbjct: 244 SGELVGVRASDHMTFLQHVQALGIPIAPDVVRFENKEDALQAIAKLELEMPDLPFEIDGI 303

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V+KVD F  +++LG R++SPRW+I++KF   +A T L  ID+Q+G+TG +TPVA L PV+
Sbjct: 304 VFKVDSFEQREKLGVRSKSPRWVIAYKFERYEAITTLEAIDVQVGKTGTITPVAYLTPVD 363

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           I    ++ A+LHN D I+ L           D+RVGD V+V++AG++IPKVV +  + R 
Sbjct: 364 IADTTVSRASLHNADEIERL-----------DVRVGDTVVVEKAGKIIPKVVRVEKHART 412

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
                F FP+ CP C   + RD            RCT   AC AQ  +RL +F SR   +
Sbjct: 413 KPLPKFEFPTHCPQCDEVLTRDEG------GVYIRCTNP-ACPAQLRQRLVYFGSRTGMD 465

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ---------RRQQTSTTKIENILGFGDV 533
           I+GLG++ +D   + E     +   AD++ L           R +         + FG  
Sbjct: 466 IDGLGEEVVDLLLQKE----LVENYADLYRLNVDELAELTWPRLRKGKGDEMIEVQFGRK 521

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           +  +L   IN+ R   L R + S+ IRH+G  +A+ +   + +                 
Sbjct: 522 NAESLVAGINESRTRGLARVLSSISIRHIGPRVAKLITAKFWNLDLLRSA---------- 571

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-----KNVSSEIE 648
               L  +  +GD IA+++V+F  +      +  L                 +  +  + 
Sbjct: 572 KAEDLAAIHEIGDRIAESLVKFIHSESGSQTLSDLDAVGVTMSETEPVATPDEEANLPLA 631

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            K +V TGTLQ   R + +  + +LG   ++ +S+KTD +I G+  GSKL KA+ LGV++
Sbjct: 632 GKNIVATGTLQHYTRDEIKARIEELGGRAASSVSKKTDFLIAGEKAGSKLTKAESLGVEV 691

Query: 709 MNEEQFL 715
           ++E+ F 
Sbjct: 692 LSEDDFR 698


>gi|291166519|gb|EFE28565.1| DNA ligase, NAD-dependent [Filifactor alocis ATCC 35896]
          Length = 668

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 225/715 (31%), Positives = 373/715 (52%), Gaps = 58/715 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            A K++  L + + Y+   YYQ   P I D+EYD++ +   ++    P L        P 
Sbjct: 2   DAEKKIKLLRERLEYYSAKYYQEDAPEISDAEYDSMMKELMSLEKEHPSL---RSAESPS 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+GG  +    +  H +P LSL   ++ E+L +F  +I           I + +E KID
Sbjct: 59  EKVGGSYSKKFAEYVHRVPLLSLSNAFSYEELLEFDQKIRERCG-----DISYCVELKID 113

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+KGKF++ A RG+G  GE+V+  +  I TIP+ L+  +   + VRGEV++ K
Sbjct: 114 GLSVALEYKKGKFIHGATRGNGQQGENVTDNLNEIVTIPKELNQKV--DLVVRGEVFLPK 171

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI----- 249
           + FL LN++   +G   +ANPRNAASG LR+L+      R L+ F+  + +  +      
Sbjct: 172 DRFLKLNEQQEDLGLPLFANPRNAASGSLRQLDSNITKDRNLDIFIFNVQEWMDNSDKEK 231

Query: 250 --FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   + L  +  LGF   +      +   ++ +       R  L +DIDG+V KVD
Sbjct: 232 EQELNSHSKQLNYLDDLGFKTISPREHCESMEKVIEFIKYWTEHREELLFDIDGIVIKVD 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E + ++ LG+ A++PRW I++KF  +Q  T +  I +Q+GRTG+LTP+A L PV I G+ 
Sbjct: 292 ELNKREILGQTAKAPRWAIAYKFPAEQKETTIEAITVQVGRTGVLTPIAELTPVLISGST 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNEDYI             +DIRVGDRV+V++AGE+IP+V  ++ ++R      
Sbjct: 352 VSRATLHNEDYIAM-----------KDIRVGDRVIVQKAGEIIPEVHAVMKDKRDGTEVV 400

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP C +   +       K           AC AQ   R+ HFVS+ A +I+  G
Sbjct: 401 FHMPHTCPSCGAATQKIDGEVAVK-------CTNFACPAQLKRRMIHFVSKSAMDIDNFG 453

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
              +   +++      I+  ADI+ L+ +          + GF   S +NL  SIN  ++
Sbjct: 454 PSIVSSLYEN----GLIKNIADIYLLKEKDL------LQLNGFAKKSASNLISSINHSKS 503

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L + + +LGI  VG + A+ L+K + S +   +           +   L+R+  +G  
Sbjct: 504 RNLNQLLVALGIDFVGEKAAKVLSKNFSSLEELEKA----------NLDDLMRIEEIGLK 553

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
            AQ+I+ ++Q   N   +E L++      SI   ++N S     KK V TGTL+ ++R +
Sbjct: 554 TAQSILNYFQLEENRAVLERLVEYGVNTKSISGTDQNSSKVFSGKKFVLTGTLEGMKRSE 613

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +   G  V + +S   D ++ GD+PGSKL+KAQ+L + I+ +++FL ++ +
Sbjct: 614 AKKIIETCGGEVMSAVSTSVDYLLAGDSPGSKLKKAQELNIPILTKDEFLVMVNE 668


>gi|86131748|ref|ZP_01050345.1| DNA ligase (NAD(+)) [Dokdonia donghaensis MED134]
 gi|85817570|gb|EAQ38744.1| DNA ligase (NAD(+)) [Dokdonia donghaensis MED134]
          Length = 664

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 220/709 (31%), Positives = 357/709 (50%), Gaps = 51/709 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++IE+   ++  L QE+  H+  YY    P I D E+D    +  A+  A P     +DP
Sbjct: 1   MTIEE---QILQLRQELREHNYNYYTLDTPTISDFEFDKKLEQLKALELANPAY---DDP 54

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P +++GG +  +   + H     SL+  ++ EDL  +  R+ +      D  + +T E
Sbjct: 55  NSPTHRVGGAVTKNFETIVHEHRMYSLDNSYSKEDLEDWEARVKKMV----DGEVHYTCE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I++ YE G+ + A  RGDG  G+DV+  I+ I ++P  L  + P   ++RGE+
Sbjct: 111 LKYDGASISLTYENGELLRAVTRGDGLQGDDVTTNIKTIKSVPLKLKGDYPPKFDIRGEI 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
            +  + F A+N E   +G + Y NPRN ASG L+  +  ++ +     +      + +  
Sbjct: 171 VLPWDGFHAMNAEREELGFELYRNPRNTASGSLKLQDSAEVAKRPLQCLLYNITGNNLGI 230

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E LQK R  GF V +    A +   ++ + N     R  LPY+ DG+V KV+    
Sbjct: 231 TTQIESLQKARDWGFMVPDAAVLAKSIDEVLDFINHWDKARHDLPYETDGVVVKVNGLQQ 290

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q++LG  A++PRW +++KF  +Q STRL +I  Q+GRTG +TPVA LEPV + G  +  A
Sbjct: 291 QEELGYTAKAPRWAMAYKFKAEQVSTRLREITYQVGRTGAITPVANLEPVELAGTTVKRA 350

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN D I+ L           DIR GD V V++ GE+IPK++ + + +R  D++P  + 
Sbjct: 351 SLHNADQIERL-----------DIREGDEVFVEKGGEIIPKIIAVDLTKRPADSEPTDYI 399

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C +++VR          A H C   + C  Q + R++H++SR A +I+GLG + +
Sbjct: 400 AECPECDTQLVRKEGE------AQHYCPNDMGCPPQIIGRIQHYISRKAMDIDGLGGETV 453

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                       I   AD++ L   Q      +  +      S  NL + +     I  E
Sbjct: 454 ALLVNE----GLILNYADLYELTVAQ------LLPLERMAQKSAENLVNGVQASVKIPFE 503

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +F LGIR+VG  +A+ LAK+Y S                     L+ V  +G  IA++
Sbjct: 504 KVLFGLGIRYVGETVAKKLAKHYKSIDAIISATE----------EELVAVDEIGIKIAES 553

Query: 612 IVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +V F+    +I  +E L               N S  +  K  V +G  + + R+  ++ 
Sbjct: 554 VVAFFAKAEHIALIERLRSYGVQLEISAEKLANQSDVLAGKTFVVSGVFE-MPRNDLKKL 612

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
           +   G  VS+ +S KT  ++ G+  G SKLEKAQ+LG+ I++E +FL L
Sbjct: 613 IEDNGGKVSSSISSKTSYLVAGEKMGPSKLEKAQKLGITIISEIEFLAL 661


>gi|116490507|ref|YP_810051.1| NAD-dependent DNA ligase [Oenococcus oeni PSU-1]
 gi|122277306|sp|Q04GN6|DNLJ_OENOB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116091232|gb|ABJ56386.1| NAD-dependent DNA ligase [Oenococcus oeni PSU-1]
          Length = 684

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 241/722 (33%), Positives = 385/722 (53%), Gaps = 55/722 (7%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
            Q  PIE L+  QA+ E+  L  E++     YY+   P + D  YDA   R  A+  A+P
Sbjct: 5   DQFTPIEDLTFTQAQAEIRDLSDELTKWGREYYEEDNPSVEDYVYDAHYARLVALEKAYP 64

Query: 64  DLARSEDPNGPLNKIGGEM-----NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
            LA    P+ P   +         +  L KV H +P LSL  +++I++L  +        
Sbjct: 65  SLAM---PDSPTQHVAAGNQTKNDSRGLQKVVHPVPMLSLGDVFSIQELLDWD----LVT 117

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
            K   +   + LE KIDG  I++RYE G+ + A+ RGDG  GE+V+  ++ I  IP+VL+
Sbjct: 118 TKNAGSQQKYNLELKIDGLAISLRYENGRLIQASTRGDGSIGENVTDNVKTITEIPKVLN 177

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237
             +   IEVRGE+Y+ K  F  LN +    G+  +ANPRNAA+G LR+L+P     R+L+
Sbjct: 178 EPL--TIEVRGEIYMRKEAFADLNQQRDEEGKTIFANPRNAAAGSLRQLDPKITAKRHLS 235

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            F++   +   +    Q ++L++ R LGFPVN+  +  +    +  Y +E    R  LPY
Sbjct: 236 SFIYYTAQNDVLGVNTQSDVLERFRQLGFPVNSSNKVIDRMTEVKDYIDEYTIKRDNLPY 295

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
            IDG+V KV++  ++ +LG   + PRW I++KF  ++A T + DI   +GRTG++TP A 
Sbjct: 296 GIDGVVVKVNDLDVENELGNTVKIPRWSIAYKFPPEEALTVVRDITWTVGRTGVVTPTAI 355

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           ++PV + G  +  A+LHN DY++            +D+R+GD V + +AG++IP+V  +I
Sbjct: 356 MDPVFLAGTKVKRASLHNPDYLQ-----------EKDVRIGDTVTLHKAGDIIPEVGQVI 404

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + +R  DAQ +  P +CP C+S++V            A RC     C AQ  E L HF S
Sbjct: 405 LKKRPADAQAYPIPVYCPSCKSKLVHVQGE------VALRCINP-ECPAQIKEGLIHFAS 457

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R+A NI+GLG + ++           IR  +D++ L   Q T+      +  F D+S  N
Sbjct: 458 RNAMNIDGLGPRVVEQLLSKN----LIRKISDLYALTESQLTT------LDKFADLSSKN 507

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L  +I++ R  S+ER I +LGIR VGA+ A+ LA ++ + +N                  
Sbjct: 508 LIQAIDRSRQNSVERLITALGIRGVGAKAAKVLAAHFKNLRNLQNA----------GAEE 557

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFT 655
           +  +  VG ++A AI +++ +      +  L              V  +    NK++V T
Sbjct: 558 IAEIDGVGQVMADAIRQYFNSESVASLINELENFQVNFDYLTTSTVDEKNYFFNKRIVLT 617

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G L    R + Q ++ + GA VS+ +S KTD++I G + GSKLE+A +LG+K++NE+ F+
Sbjct: 618 GKLIHWTRPQMQAWLEEHGANVSSSVSSKTDLLIAGSDVGSKLERANKLGIKVINEQDFI 677

Query: 716 FL 717
            L
Sbjct: 678 NL 679


>gi|290889907|ref|ZP_06552994.1| hypothetical protein AWRIB429_0384 [Oenococcus oeni AWRIB429]
 gi|290480517|gb|EFD89154.1| hypothetical protein AWRIB429_0384 [Oenococcus oeni AWRIB429]
          Length = 684

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 241/722 (33%), Positives = 385/722 (53%), Gaps = 55/722 (7%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
            Q  PIE L+  QA+ E+  L  E++     YY+   P + D  YDA   R  A+  A+P
Sbjct: 5   DQFTPIEDLTFTQAQAEIRDLSDELTKWGREYYEEDNPSVEDYVYDAHYARLVALEKAYP 64

Query: 64  DLARSEDPNGPLNKIGGEM-----NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
            LA    P+ P   +         +  L KV H +P LSL  +++I++L  +        
Sbjct: 65  SLAM---PDSPTQHVAAGNQTKNDSRGLQKVVHPVPMLSLGDVFSIQELLDWD----LVT 117

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
            K   +   + LE KIDG  I++RYE G+ + A+ RGDG  GE+V+  ++ I  IP+VL+
Sbjct: 118 TKNAGSQQKYNLELKIDGLAISLRYENGRLIQASTRGDGSIGENVTDNVKTITEIPKVLN 177

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237
             +   IEVRGE+Y+ K  F  LN +    G+  +ANPRNAA+G LR+L+P     R+L+
Sbjct: 178 EPL--TIEVRGEIYMRKEAFADLNRQRDEEGKTIFANPRNAAAGSLRQLDPKITAKRHLS 235

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            F++   +   +    Q ++L++ R LGFPVN+  +  +    +  Y +E    R  LPY
Sbjct: 236 SFIYYTAQNDVLGVNTQSDVLERFRQLGFPVNSSNKVIDRMTEVKDYIDEYTIKRDNLPY 295

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
            IDG+V KV++  ++ +LG   + PRW I++KF  ++A T + DI   +GRTG++TP A 
Sbjct: 296 GIDGVVVKVNDLDVENELGNTVKIPRWSIAYKFPPEEALTVVRDITWTVGRTGVVTPTAI 355

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           ++PV + G  +  A+LHN DY++            +D+R+GD V + +AG++IP+V  +I
Sbjct: 356 MDPVFLAGTKVKRASLHNPDYLQ-----------EKDVRIGDTVTLHKAGDIIPEVGQVI 404

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + +R  DAQ +  P +CP C+S++V            A RC     C AQ  E L HF S
Sbjct: 405 LKKRPADAQAYPIPVYCPSCKSKLVHVQGE------VALRCINP-ECPAQIKEGLIHFAS 457

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R+A NI+GLG + ++           IR  +D++ L   Q T+      +  F D+S  N
Sbjct: 458 RNAMNIDGLGPRVVEQLLSKN----LIRKISDLYALTESQLTT------LDKFADLSSKN 507

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L  +I++ R  S+ER I +LGIR VGA+ A+ LA ++ + +N                  
Sbjct: 508 LIQAIDRSRQNSVERLITALGIRGVGAKAAKVLAAHFKNLRNLQNA----------GAEE 557

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFT 655
           +  +  VG ++A AI +++ +      +  L              V  +    NK++V T
Sbjct: 558 IAEIDGVGQVMADAIRQYFNSESVASLINELENFQVNFDYLTTSTVDEKNYFFNKRIVLT 617

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G L    R + Q ++ + GA VS+ +S KTD++I G + GSKLE+A +LG+K++NE+ F+
Sbjct: 618 GKLIHWTRPQMQAWLEEHGANVSSSVSSKTDLLIAGSDVGSKLERANKLGIKVINEQDFI 677

Query: 716 FL 717
            L
Sbjct: 678 NL 679


>gi|322368190|ref|ZP_08042759.1| NAD-dependent DNA ligase LigA [Haladaptatus paucihalophilus DX253]
 gi|320552206|gb|EFW93851.1| NAD-dependent DNA ligase LigA [Haladaptatus paucihalophilus DX253]
          Length = 685

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 236/720 (32%), Positives = 358/720 (49%), Gaps = 55/720 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             P+  +    A ++   L + I +HD  YY  + P I D  YDAL  R   +  AF   
Sbjct: 19  FEPVAEMDEAGASEQAELLREAIRHHDYRYYVENDPRIGDRTYDALFTRLQELEEAFD-- 76

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              + P+ P  ++GGE    L  V H  P LS++     ED+R F  RI+R     +   
Sbjct: 77  --VQTPDSPTRRVGGEPLDELESVEHVAPMLSIDSSGEAEDVRGFDDRIHR-----EVGD 129

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + +  +PK DG  + + YE G+FV AA RGDG +GEDV+  +R I +IP  L  + P+ +
Sbjct: 130 VEYVCDPKFDGLSLEVVYEDGEFVRAATRGDGETGEDVTENVRTIASIPHHLRGDYPDYL 189

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245
            VRGEVY+  + F   N E +  G  P+ANPRNAA+G LR+L+P+               
Sbjct: 190 AVRGEVYLPLDAFTEFNRERVEQGEDPFANPRNAAAGSLRQLDPSVTAERPLDCFFYDVL 249

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            +       +   + +   G  VN+   + +     + Y +E+ + R+ L Y+IDG V K
Sbjct: 250 AASEEFPTHWSEYEALPEFGLKVNDRTERVDDIEDCIEYRDELMADRADLNYEIDGTVIK 309

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++     +LG  ARS RW  ++KF  +   T ++D+ +Q+GRTG LTPVA LEPV++GG
Sbjct: 310 VNDREKCAELGTTARSYRWAYAYKFPARSERTSIMDVTVQVGRTGRLTPVALLEPVDVGG 369

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ A+LHN D I             +DI VGD V VKRAG+VIP V +++        
Sbjct: 370 VTVSRASLHNPDEI-----------AEKDINVGDEVQVKRAGDVIPYVSEVVEKH---SE 415

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
             +  P  CP+C S V         +      CTGGLAC+AQ  + + ++ S D  +I+G
Sbjct: 416 GHYELPDRCPVCGSPV--------ERDGPIAYCTGGLACTAQLRQAVAYYGSDDGLDIDG 467

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG+++++    +              +L    +    ++  + G+G+ S  NL   I K 
Sbjct: 468 LGEERVNQLIDAGLL----------ESLPDLYELDEKELLELEGWGEKSAENLLAEIEKS 517

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  SL  F+ ++GI  VG E AR LA+ + S  +              D   L  VP +G
Sbjct: 518 KRPSLADFLSAIGIPRVGTETARELARTFESMDDVMNA----------DSDELEAVPDIG 567

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +A  I EF+ + RN   VE LLK V P   R E     E+ +   VFTG+L +  R  
Sbjct: 568 PKVAAGIREFFDSERNRSVVEQLLKHVEP--EREEVAGGDELADLTFVFTGSLSE-PRSD 624

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             E V   GA  +  +S  TD ++VG+NPG SK   A +  V I++E++F  LL++    
Sbjct: 625 ISELVENHGANATGSVSGNTDYLVVGENPGESKPNDADENDVPILSEDEFWNLLEEAGID 684


>gi|311113170|ref|YP_003984392.1| NAD-dependent DNA ligase LigA [Rothia dentocariosa ATCC 17931]
 gi|310944664|gb|ADP40958.1| NAD-dependent DNA ligase LigA [Rothia dentocariosa ATCC 17931]
          Length = 740

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 221/754 (29%), Positives = 363/754 (48%), Gaps = 79/754 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +  R E + L   I      YYQ   P + D+EYD L RR + I   +P L  +   + P
Sbjct: 27  DTIRAEYAELTDTIRTARHDYYQEDAPTLSDAEYDRLYRRLEQIEAQYPALIAN---DSP 83

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE++ +   VTH +   SLE ++++E+LR ++T+     +     +  +  E KI
Sbjct: 84  TQEVGGEVSEAFSPVTHLVRMYSLEDVFSLEELRAWLTKAEENTRLLTGTAPQWLTELKI 143

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193
           DG  + + Y  G  V AA RGDG +GEDV+  +R I +IP+ L+  N P  +EVRGEV+I
Sbjct: 144 DGLAVNLLYRNGVLVRAATRGDGTTGEDVTHNVRTIASIPQKLAGENHPAELEVRGEVFI 203

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
           S  DF  LN++M++ G+ P+ANPRNAA+G LR+ +      R L+ +VHG+G  + +   
Sbjct: 204 SSADFKKLNEKMVSEGKNPFANPRNAAAGSLRQKDSAVTAERPLSMYVHGVGSRTGLDVN 263

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            QY+  +++   G P +   +   +   I+ Y  E    R +L ++IDG+V KV++F  Q
Sbjct: 264 SQYQTYEQLAAWGLPTSPYSKLFTSVDDILRYIAEYGEKRHSLVHEIDGIVIKVNDFVAQ 323

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            QLG  +R PRW +++K+  ++ +T+LLDI + +GRTG +TP   +EPV + G+ +  AT
Sbjct: 324 TQLGYTSRVPRWAVAYKYPPEEVNTKLLDIRVDVGRTGRVTPYGVMEPVLVSGSTVERAT 383

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+D +K            + + +GD V++++AG+VIP++V  +V  R+   + F  P+
Sbjct: 384 LHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVGPVVALRNGHEREFVMPT 432

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +         +     RC    +C AQ  ER+ +  SR AF+IE LG +   
Sbjct: 433 ECPSCGTTLA-----PGKEGDVDMRCPNYRSCPAQLTERIYYAASRGAFDIEALGFEAAK 487

Query: 493 FFFKSEDPA-FSIRIPADIFTLQRRQ-------------------------QTSTTKIEN 526
                 +P    +   A +F L                               +      
Sbjct: 488 ALTAPAEPEQPPLTSEAFLFDLTAEDLRDVKIRREKKVKGVGTGKFELVPYFYTKPTKAK 547

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
                  +  NL+  + K ++  L R + +L IRHVG   AR+LA  + S    AQ    
Sbjct: 548 PDPVPTKNTQNLFVELEKAKSQPLWRVLVALSIRHVGPTAARALATEFGSMDAIAQA--- 604

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
                  D   L  V  VG +IA +I+E++    +   +              + ++   
Sbjct: 605 -------DRDRLAAVDGVGGVIADSIIEWFATDWHREVLARWADAGVRMEDERDASIER- 656

Query: 647 IENKKLVFTGTLQ-----------KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
                     TL+              R  A+E +   G   S  +S+KT  ++ G + G
Sbjct: 657 ----------TLEGVTVVVTGTLVNYSRDSAKEAIIVRGGRASGSVSKKTHFVVAGASAG 706

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
           SKL+KA+ LG+ +++E+ F  LL      L   +
Sbjct: 707 SKLDKAEALGIPVLDEDGFTKLLAHGPDALAPGE 740


>gi|328946560|gb|EGG40699.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1087]
          Length = 652

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 219/701 (31%), Positives = 357/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +   +    P+ P ++
Sbjct: 2   KERMSELVKLLNRYAHEYYTADRPSVSDSEYDRLYRELVELEEKY---STDILPDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  RI +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRIRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N      G   +ANPRNAA+G LR+L+   +    N       + S      Q  +
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQVGSQEAV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+  L F VN     A++   +  +  ++   R +L Y+IDG+V KV++ ++Q++LG 
Sbjct: 231 LNKLADLDFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  +      PS CP C
Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EIPSHCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           +S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  A I+ L          +  +  F + S   LY +I   +  S ER +F L
Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + +      +Q               +  +  +G +IAQ++  +++
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +  L +E        +K V  + +    +V TG LQK+ R++A+E +  LGA 
Sbjct: 552 QEGSQILLAELQEEGVNLDYLGQKAVADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 612 VSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|58038653|ref|YP_190617.1| NAD-dependent DNA ligase [Gluconobacter oxydans 621H]
 gi|81352629|sp|Q5FUI5|DNLJ_GLUOX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|58001067|gb|AAW59961.1| NAD-dependent DNA ligase [Gluconobacter oxydans 621H]
          Length = 683

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 273/705 (38%), Positives = 416/705 (59%), Gaps = 34/705 (4%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            A +  ++LE +++  D+ Y+   +P + D+ YDA +R   A+  A+PDL       G  
Sbjct: 7   SAAERHAALEADLAQWDEAYHGRDEPEVSDAVYDAARRELLALEEAYPDL---RSQEGAS 63

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIFFTLEPK 133
            ++G   + +  K  H +P LSL+ +++ E    F++R+ RF    +D   ++ F  EPK
Sbjct: 64  QRVGATPDSAFGKYRHLVPMLSLDNVFDPEGFDGFVSRVGRFLGLDEDGLQALQFVAEPK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I++ YE G FV    RGDG  GEDV+A +  +  IPR L    PE +E+RGEV++
Sbjct: 124 IDGLSISLTYEHGHFVRGTTRGDGIEGEDVTANLLTLKDIPRELPGEAPERVEIRGEVFL 183

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
           SK+ FL LN++ +A G KP+ANPRNAA+G LR+L+     +R L+ F +  G TS   A 
Sbjct: 184 SKSSFLTLNEQQVARGAKPFANPRNAAAGSLRQLDAEITRSRPLSLFAYAQGYTSSPVAT 243

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             ++ L+K+R  GF VN   +       I +Y  ++   RS L YDIDG+V+K+D+ SLQ
Sbjct: 244 THWDYLEKLRSWGFTVNPLSQMIAHARDIPAYVEKLARERSELDYDIDGIVFKLDDLSLQ 303

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG   R+PRW I+ KF  +QA TRL +I+IQ+GRTG LTPVA LEPVN+GG +++ AT
Sbjct: 304 DRLGFAGRAPRWAIAWKFPAEQAITRLREIEIQVGRTGALTPVAHLEPVNVGGVIVSRAT 363

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             +D+RVGD V ++RAG+VIP+++  + +E  P ++PF +P 
Sbjct: 364 LHNEDEIAR-----------KDVRVGDLVRLQRAGDVIPQILGPVPSE-EPRSEPFVYPD 411

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C S   R          A  RCTGGL C AQ +ERL H VSR+AF+I+GLG++ + 
Sbjct: 412 HCPVCGSLAERVHGE------AVRRCTGGLTCEAQIVERLIHMVSRNAFDIDGLGERSIR 465

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F+     A  IR P DIF L++ ++     +    G+G +SV NL+ +I  RR I L R
Sbjct: 466 EFYD----AGYIRRPGDIFRLRQHEE----ALLQRDGWGRLSVDNLFRAIEDRRTIPLSR 517

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            IF LGIR +G   A+ LA++Y +++N+   +      ++++  SL  +  VGD IA  +
Sbjct: 518 LIFGLGIRRIGERNAQLLARHYQTFENWRTAMLAARP-DSEERASLGAIMGVGDAIADEL 576

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
             F+    NI  ++ L  E+   I   E      +  K +VFTGTL  + R +A+    +
Sbjct: 577 SAFFSESHNIETLDDLALELKDIIAE-EAPSEGHLSGKVIVFTGTLTTMSRPEAKAIAER 635

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           LGA V+  +S+KT ++++G+  GSK +KA +LG++ ++E  +  L
Sbjct: 636 LGAQVTDSVSKKTSLVVLGEKAGSKAKKAAELGIETVDESGWRVL 680


>gi|300743918|ref|ZP_07072938.1| DNA ligase, NAD-dependent [Rothia dentocariosa M567]
 gi|300380279|gb|EFJ76842.1| DNA ligase, NAD-dependent [Rothia dentocariosa M567]
          Length = 740

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 361/744 (48%), Gaps = 79/744 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +  R E + L   I      YYQ   P + D+EYD L RR + I   +P L  +   + P
Sbjct: 27  DTIRAEYAELTDTIRAARHDYYQADAPTLSDAEYDRLYRRLEQIEAQYPALIAN---DSP 83

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++GGE++ +   VTH +   SLE ++++E+LR ++T+     +     +  +  E KI
Sbjct: 84  TQEVGGEVSEAFSPVTHLVRMYSLEDVFSLEELRAWLTKAEENTRLLTGTAPQWLTELKI 143

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193
           DG  + + Y  G  V AA RGDG +GEDV+  +R I +IP+ L+  N P  +EVRGEV+I
Sbjct: 144 DGLAVNLLYRNGVLVRAATRGDGTTGEDVTHNVRTIASIPQKLAGENHPAELEVRGEVFI 203

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
           S  DF  LN++M++ G+ P+ANPRNAA+G LR+ +      R L+ +VHG+G  + +   
Sbjct: 204 SSADFKKLNEKMVSEGKNPFANPRNAAAGSLRQKDSAVTAERPLSMYVHGVGSRTGLDVN 263

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            QY+  +++   G P +   +   +   I+ Y  E    R +L ++IDG+V KV++F  Q
Sbjct: 264 SQYQTYEQLAAWGLPTSPYSKLFTSVDDILRYIAEYGEKRHSLVHEIDGIVIKVNDFVAQ 323

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            QLG  +R PRW +++K+  ++ +T+LLDI + +GRTG +TP   +EPV + G+ +  AT
Sbjct: 324 TQLGYTSRVPRWAVAYKYPPEEVNTKLLDIRVDVGRTGRVTPYGVMEPVLVSGSTVERAT 383

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+D +K            + + +GD V++++AG+VIP++V  +V  R+   + F  P+
Sbjct: 384 LHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVGPVVALRNGHEREFVMPT 432

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +         +     RC    +C AQ  ER+ +  SR AF+IE LG +   
Sbjct: 433 ECPSCGTTLA-----PGKEGDVDMRCPNYRSCPAQLTERIYYAASRGAFDIEALGFEAAK 487

Query: 493 FFFKSEDPA-FSIRIPADIFTLQRRQ-------------------------QTSTTKIEN 526
                 +P    +   A +F L                               +      
Sbjct: 488 ALTAPAEPEQPPLTSEAFLFDLTAEDLRDVKIRREKKVKGVGTGKFELVPYFYTKPTKAK 547

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
                  +  NL+  + K ++  L R + +L +RHVG   AR+LA  + S    AQ    
Sbjct: 548 PEPVPTKNTQNLFVELEKAKSQPLWRVLVALSLRHVGPTAARALATEFGSMDAIAQA--- 604

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
                  D   L  V  VG +IA +I+E++    +   +              + ++   
Sbjct: 605 -------DRDRLAAVDGVGGVIADSIIEWFATDWHREVLARWADAGVRMEDERDASIER- 656

Query: 647 IENKKLVFTGTLQ-----------KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
                     TL+              R  A+E +   G   S  +S+KT  ++ G + G
Sbjct: 657 ----------TLEGVTVVVTGTLVNYSRDSAKEAIIVRGGRASGSVSKKTHFVVAGASAG 706

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SKL+KA+ LG+ +++E+ F  LL 
Sbjct: 707 SKLDKAEALGIPVLDEDGFTKLLA 730


>gi|300173629|ref|YP_003772795.1| DNA ligase, NAD-dependent [Leuconostoc gasicomitatum LMG 18811]
 gi|299888008|emb|CBL91976.1| DNA ligase, NAD-dependent [Leuconostoc gasicomitatum LMG 18811]
          Length = 681

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 244/717 (34%), Positives = 379/717 (52%), Gaps = 51/717 (7%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
            +L PIE LS E A+ E++ L+ ++  +   YY+   PI+ D  YDAL  R  A+   FP
Sbjct: 3   PELKPIEKLSREAAQHEIAKLQDDLRQYGIAYYEQDAPIVEDYIYDALYARLVALETVFP 62

Query: 64  DLARSEDPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
                 +P+ P   +GG M    L KV H  P LSL  ++++E+L ++ +R  +    + 
Sbjct: 63  QFI---NPDSPTQNVGGAMTKSGLEKVVHPAPMLSLGDVFSLEELDEWDSRTTKSLGFQS 119

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
           D    + LE KIDG  + + Y  GK V A+ RG+G  GEDV+A ++ I  IP+VL+  I 
Sbjct: 120 D----YNLELKIDGLAVALTYVSGKLVQASTRGNGTIGEDVTANVKMIKAIPQVLNEPI- 174

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVH 241
             IEVRGE+Y+ K+ F  LN +    G  P+ANPRNAA+G LR+LN      R L+ FV+
Sbjct: 175 -TIEVRGEIYMPKSSFSTLNKQRELDGLAPFANPRNAAAGSLRQLNAKIMKQRNLSAFVY 233

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
              +   + +  Q + L++   LG P +   R       I +Y  E    R  L Y IDG
Sbjct: 234 YTAEPDILGSTTQSDALKRFSSLGLPTDTHNRVMTKMADINNYIAEYTVTRDNLAYGIDG 293

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KV++   Q  LG   + PRW I++KF  ++A T +  I+  +GRTG +TP A ++PV
Sbjct: 294 VVVKVNQLDDQLDLGNTVKIPRWAIAYKFPPEEALTVVRAIEWTVGRTGAVTPTAVMDPV 353

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  +  A+LHN DY+             + +R+ D V + +AG++IP++  +I+++R
Sbjct: 354 QLAGTTVQRASLHNPDYL-----------NEKGVRLEDTVTLHKAGDIIPEIGQVILSKR 402

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              ++ +  P FCP CQS +V            A RC     CSAQ  E L HF SR+A 
Sbjct: 403 PTGSEAYEIPVFCPACQSELVHIEGE------VALRCINPF-CSAQIQEGLTHFASRNAM 455

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NIEG+G + ++   K    A  I+  A I+ L   Q  S      +  F + +V NL  S
Sbjct: 456 NIEGMGPKVIEQLLK----ADYIKDVAAIYRLTSEQLFS------LDKFKEKAVNNLLMS 505

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I + ++ SLE+ +F LGIR VGA+ AR LA  + + Q+ A                +  +
Sbjct: 506 IARSKDNSLEKLLFGLGIRMVGAKAARVLAGKFKNLQSIATATT----------EDIANI 555

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQ 659
             +GD IA++IV+++  P +   ++ L         +   E + ++   +K++V TG L+
Sbjct: 556 DGIGDRIARSIVQYFDMPESKQLLQELTDAGVNQKYLSDVEIDENNFFYHKRIVLTGKLE 615

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           K  R    +++   GA VS  +S KTD++I G+  GSKL KA +LGV    E++F+ 
Sbjct: 616 KNSRSMVTKWLQDHGASVSGAVSAKTDLLIAGEAAGSKLRKANELGVPTWTEQEFIS 672


>gi|332359434|gb|EGJ37254.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK355]
          Length = 652

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 219/701 (31%), Positives = 357/701 (50%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +S L + ++ +   YY   +P + DSEYD L R    +   +P       P+ P ++
Sbjct: 2   KERMSELVKLLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYP---TDILPDSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG++     K  H  P  SL+  ++ E+L  F  RI +     +   + +  E KIDG 
Sbjct: 59  VGGKILEGFEKYPHQYPLFSLQDAFSREELIVFDQRIRK-----EFPQVSYLCELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YEKG  V  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ K  
Sbjct: 114 SISLTYEKGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPL--DITVRGECYMPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F A+N      G   +ANPRNAA+G LR+L+   +    N       + S      Q E+
Sbjct: 172 FDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPTQVGSQEEV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+  L F VN     A++   +  +  ++   R +LPY+IDG+V KV++ ++Q++LG 
Sbjct: 231 LNKLADLDFSVNPTRILADSIQAVWEFIEKIAQERDSLPYEIDGIVIKVNDLAVQEELGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++P+W I++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR  D V+V +AG++IP V+ ++ ++R  +      PS+CP C
Sbjct: 351 YI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSEEPL-EIPSYCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           +S +V   +        A RC   L C AQ  E L HF SRDA NI GLG   ++  F  
Sbjct: 399 ESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++  A I+ L          +  +  F + S   LY +I   +  S ER +F L
Sbjct: 452 N----LVKDVAGIYRLTVE------NLLELENFKEKSANKLYTAIQASKENSAERLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + +      +Q               +  +  +G +IAQ++  +++
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQ----------EEIAAIDSLGTVIAQSLHTYFE 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              +   +  L +          +    + +    +V TG LQK+ R++A+E +  LGA 
Sbjct: 552 QEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VS  +S+KTD+++ G + GSKL KAQ+LG++I +E+    L
Sbjct: 612 VSGSVSKKTDLVVTGQDAGSKLAKAQELGIEIRDEDWLDSL 652


>gi|183603490|ref|ZP_02717204.2| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC3059-06]
 gi|183576581|gb|EDT97109.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC3059-06]
          Length = 648

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 212/698 (30%), Positives = 355/698 (50%), Gaps = 51/698 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++GG
Sbjct: 1   MNELVALLNRYATEYYTSDNPSVADSEYDRLYRELVELETAYPEQVLA---DSPTHRVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           ++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  I+
Sbjct: 58  KVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLSIS 112

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F  
Sbjct: 113 LTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASFDQ 170

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q + L+ 
Sbjct: 171 VNQVRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGLKY 229

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   +
Sbjct: 230 LEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVK 289

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI 
Sbjct: 290 APKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI- 348

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
                       +DIR  D V+V +AG++IP V+ ++ ++R  + +    P+ CP C S 
Sbjct: 349 ----------AEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKL-DIPTNCPSCNSD 397

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           ++   +        A RC     C AQ +E L HF SRDA NI GLG   ++  F     
Sbjct: 398 LLHFEDE------VALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----A 446

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
           A  ++  ADI+ LQ            + G  + S   LY +I   +  S E+ +F LGIR
Sbjct: 447 ANLVKDVADIYRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIR 500

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           HVG+++++ L +Y+ S +N +Q           D   +  +  +G +IA+++  ++    
Sbjct: 501 HVGSKVSQLLLQYFHSIENLSQA----------DSEEVASIESLGGVIAKSLQTYFATEG 550

Query: 621 NICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
           +   +  L +       +       + +    +V TG L++++R +A+  +  LGA V+ 
Sbjct: 551 SEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTG 610

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            +S+KTD+++VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 611 SISKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL 648


>gi|163788595|ref|ZP_02183040.1| putative DNA ligase [Flavobacteriales bacterium ALC-1]
 gi|159875832|gb|EDP69891.1| putative DNA ligase [Flavobacteriales bacterium ALC-1]
          Length = 664

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/705 (32%), Positives = 363/705 (51%), Gaps = 47/705 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L +E+  H+  YY      I D E+D   +   A+  A P+     DPN P  +
Sbjct: 4   KQKIEILREELRQHNYNYYILDNATISDYEFDIKLKELQALEEANPEFF---DPNSPTQR 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+  +     H     SL+  ++ EDL  + TRI +      D  + +  E K DG 
Sbjct: 61  VGGEITKNFNTTVHDFRMYSLDNSYSKEDLLDWETRIKKMV----DGEVQYNCELKYDGA 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V A  RGDG  G++V+A ++ I T+P  L  + PE  ++RGE+ +    
Sbjct: 117 SMNLTYENGKLVRAVTRGDGVQGDEVTANVKTIKTVPLQLKGDFPERFDIRGEIILPIEG 176

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           FL +N+E IA   +PY NPRN ASG L+  +  ++ +     +    K + +  + Q+E 
Sbjct: 177 FLKMNEERIANDEEPYRNPRNTASGSLKLQDSAEVAKRPLECLLYSIKGNNLNIQSQFEG 236

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+K R  GF V    +  N+   ++ Y       R  LPY+IDG+V KV++   Q +LG 
Sbjct: 237 LKKAREWGFKVPKEAKLVNSIDAVLDYVEYWDEHRHNLPYEIDGVVVKVNDLYQQDELGF 296

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A++PRW +++KF  +Q STRL +I  Q+GRTG +TPVA LEPV + G ++  A+LHN D
Sbjct: 297 TAKAPRWAMAYKFKAEQVSTRLNEITYQVGRTGAITPVANLEPVQLAGTIVKRASLHNAD 356

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+ L           DIR GD V V++ GE+IPK++ + +++R  D++P  + S CP C
Sbjct: 357 QIEKL-----------DIREGDEVFVEKGGEIIPKIIAVDLSKRPEDSKPTVYISCCPEC 405

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           ++ + R          A H C     C  Q + R++HF+SR A +IEGLG + +    K 
Sbjct: 406 ETTLERIEGE------AKHYCPNYNGCPPQVVGRIQHFISRKAMDIEGLGGETVALLVKE 459

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I+  +D++ L   Q         +    + S  NL + +   + I  ER +F L
Sbjct: 460 ----GLIKDYSDLYELTVAQVI------PLERMAEKSAENLINGVEVSKQIPFERVLFGL 509

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR+VG  +A+ LAK+Y S                   L LI V  +G+ IA+++VEF+ 
Sbjct: 510 GIRYVGETVAKKLAKHYKSIDALMFATT----------LDLIAVDEIGERIAESVVEFFS 559

Query: 618 NPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
              N   +E L               N + +++   +V +G  + I R++ ++ +   GA
Sbjct: 560 LGENRKIIERLKSFGVQLEISADKLANQTDKLKGFSIVVSGVFETISRNELKKLIEDNGA 619

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            VS+ +S KT  ++ GD  G SK  KA+ L + I+ E++FL  L+
Sbjct: 620 KVSSSISSKTSYLVAGDKMGPSKRTKAESLNIPIITEQEFLNKLK 664


>gi|111225216|ref|YP_716010.1| DNA ligase [Frankia alni ACN14a]
 gi|122953782|sp|Q0RDH8|DNLJ_FRAAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|111152748|emb|CAJ64491.1| DNA ligase [Frankia alni ACN14a]
          Length = 771

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 222/712 (31%), Positives = 354/712 (49%), Gaps = 48/712 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R   + L +E+  H   YY    P + D+EYD L R   A+    P+L     P+ P  K
Sbjct: 60  RARAAELARELDEHAYRYYVLDSPTVSDAEYDRLMRELTALEEHHPEL---RTPDSPTQK 116

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           + G  +     V H    LSL+ +++ ++   +  R  R  +        +  E KIDG 
Sbjct: 117 VAGSYSTLFTPVEHLERLLSLDNVFDDDEFHLWAARAARETEVDG-----WLCELKIDGL 171

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196
            + + YE+G+ V AA RGDG +GED++  IR + ++P  L   ++PE++EVRGEV+    
Sbjct: 172 AVDLVYEEGRLVRAATRGDGRTGEDITPNIRTLASVPTRLRGASVPELLEVRGEVFFPTE 231

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN  ++A G KP+ANPRNAA+G LR+ +P    TR L+  VHGLG      A  Q 
Sbjct: 232 KFAELNASLVAGGGKPFANPRNAAAGSLRQKDPRVTATRPLDMIVHGLGAQRGFDAASQS 291

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
               +    G PV+       +   ++++ +     R  + ++IDG+V KVD F+LQ++L
Sbjct: 292 AAYARFAEFGLPVSTHFEVLASVGDVLAFIHRWGRARHDVEHEIDGVVVKVDAFALQRRL 351

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +++PRW ++ K+  ++ +T+L DI + +GRTG +TP   LEPV + G+ +  ATLHN
Sbjct: 352 GSTSKAPRWAVAFKYPPEEVTTKLRDIRVNVGRTGRVTPFGELEPVLVAGSTVGLATLHN 411

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D +           G + + +GD V++++AG+VIP++V  +V+ R    + F  P+ CP
Sbjct: 412 VDEV-----------GRKGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGTERAFVMPTHCP 460

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +VR             RC    AC AQ  E + H  SR+A +I+GLG +      
Sbjct: 461 ECGTELVRPEGE------VDIRCPNTDACPAQLRELIFHLASRNALDIDGLGYETAIALL 514

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +++     +    DIF L           E + GFG   +  +   +   R+  L R + 
Sbjct: 515 EADR----VGDIGDIFHLTPE------SFEGLRGFGQKKIDQILRGVEAARHRPLWRLLV 564

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            L IRHVG   AR+LA+   S    A      +A           V  VG  IA A+V++
Sbjct: 565 GLSIRHVGPTAARALARELRSLDAIAAAPAEQLAA----------VEGVGPKIASAVVDW 614

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           + + R+   V  +    +             ++   +V TGTL    R  A E V   G 
Sbjct: 615 FADARHRDIVARIAAGGASLADAGAAEGPRPLDGVAVVITGTLDGWSRDSATEAVQGRGG 674

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            V+  +S+KT  ++VG +PG +K +KA+ LGV +++E  F  LL++     R
Sbjct: 675 KVTGSVSKKTAFVVVGADPGAAKYDKARSLGVPVLDEAGFAVLLERGADAAR 726


>gi|241668131|ref|ZP_04755709.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254876666|ref|ZP_05249376.1| DNA ligase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842687|gb|EET21101.1| DNA ligase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 678

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 260/718 (36%), Positives = 396/718 (55%), Gaps = 54/718 (7%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
              + L+  Q +  +  L + +      Y+   KP+I DS+YD L R    +    P L 
Sbjct: 9   TDYKTLTKAQLKSYIDDLAEYLGEQSYLYHTIDKPVITDSDYDKLFRLLQDLVDDNPQLK 68

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
            S   N  L+++GG++      + H     SL  ++++E+LR F  +I           I
Sbjct: 69  PS---NSVLDRVGGDVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDI 117

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEII 185
               EPK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P    + N PE +
Sbjct: 118 ELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEEL 177

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244
           EVRGE+ + K  FL+LN+ M     K +ANPRNAA+G +R L+      R L  + +G+G
Sbjct: 178 EVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIG 237

Query: 245 KT--SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
                 +  + Q+E++  ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGL
Sbjct: 238 YFSKDFVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEVYHHKMSHQRADLAYDIDGL 297

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V+KV+   LQ  +G  AR P+W I++KF  ++  + +L+++ Q+GRTG +TPVARL+PV 
Sbjct: 298 VFKVNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVA 357

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG +++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV  +   R 
Sbjct: 358 VGGVIVSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLSEYRK 406

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           PDAQ    P+ CP+C S +    +       A +RCTGG  C AQ  ERLKHFVSR A +
Sbjct: 407 PDAQMVEMPTNCPVCDSTIENIND------QAIYRCTGGWHCQAQTTERLKHFVSRKAMD 460

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+ LG + ++        A  I+ PADI+ L   Q T       +   G  S  N+ DSI
Sbjct: 461 IDKLGAKLIEQLV----AADLIKYPADIYKLNFEQLTG------LERMGAKSSQNVLDSI 510

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K +  SL RFIF++GI+ VG   + +LA ++ S ++F +            +  LI + 
Sbjct: 511 TKSKEPSLARFIFAIGIKDVGEVSSEALANHFGSLESFREA----------KFEQLIEIN 560

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNV-SSEIENKKLVFTGTLQK 660
            +G+IIA+ IV F+Q+  NI  V+ LL   ++       +   +    NK +V TGT + 
Sbjct: 561 DIGEIIAKNIVSFWQDSLNIQIVDELLGNSINIQNPEKIEQAHNESFTNKTIVITGTFEN 620

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             R +  + +  +GA V++ +S+KTD++I GDN GSKL KAQ LGV+++ EE    LL
Sbjct: 621 YNRTELTQLLKSMGAKVTSSVSKKTDMVICGDNAGSKLIKAQDLGVEVIFEEDLQNLL 678


>gi|118587526|ref|ZP_01544950.1| DNA ligase, NAD-dependent [Oenococcus oeni ATCC BAA-1163]
 gi|118431977|gb|EAV38719.1| DNA ligase, NAD-dependent [Oenococcus oeni ATCC BAA-1163]
          Length = 684

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 241/722 (33%), Positives = 385/722 (53%), Gaps = 55/722 (7%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
            Q  PIE L+  QA+ E+  L  E++     YY+   P + D  YDA   R  A+  A+P
Sbjct: 5   DQFTPIEDLTFTQAQAEIRDLSDELTKWGREYYEEDNPSVEDYVYDAHYARLVALERAYP 64

Query: 64  DLARSEDPNGPLNKIGGEM-----NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
            LA    P+ P   +         +  L KV H +P LSL  +++I++L  +        
Sbjct: 65  SLAM---PDSPTQHVAAGNQTKNDSRGLQKVVHPVPMLSLGDVFSIQELLDWD----LVT 117

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
            K   +   + LE KIDG  I++RYE G+ + A+ RGDG  GE+V+  ++ I  IP+VL+
Sbjct: 118 TKNAGSQQKYNLELKIDGLAISLRYENGRLIQASTRGDGSIGENVTDNVKTITEIPKVLN 177

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237
             +   IEVRGE+Y+ K  F  LN +    G+  +ANPRNAA+G LR+L+P     R L+
Sbjct: 178 EPL--TIEVRGEIYMRKESFADLNRQRDEEGKTIFANPRNAAAGSLRQLDPKITAKRRLS 235

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            F++   +   +    Q ++L++ R LGFPVN+  +  +    +  Y +E    R  LPY
Sbjct: 236 SFIYYTAQNDVLGVNTQSDVLERFRQLGFPVNSSNKVIDRMTEVKDYIDEYTIKRDNLPY 295

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
            IDG+V KV++  ++ +LG   + PRW I++KF  ++A T + DI   +GRTG++TP A 
Sbjct: 296 GIDGVVVKVNDLDVENELGNTVKIPRWSIAYKFPPEEALTVVRDITWTVGRTGVVTPTAI 355

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           ++PV++ G  +  A+LHN DY++            +D+R+GD V + +AG++IP+V  +I
Sbjct: 356 MDPVSLAGTKVKRASLHNPDYLQ-----------EKDVRIGDTVTLHKAGDIIPEVGQVI 404

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + +R  DAQ +  P +CP C+S++V            A RC     C AQ  E L HF S
Sbjct: 405 LKKRPADAQAYPIPVYCPSCKSKLVHVQGE------VALRCINP-ECPAQIKEGLIHFAS 457

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R+A NI+GLG + ++           IR  +D++ L   Q T+      +  F D+S  N
Sbjct: 458 RNAMNIDGLGPRVVEQLLSKN----LIRKISDLYALTESQLTT------LDKFADLSSKN 507

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L  +I++ R  S+ER I +LGIR VGA+ A+ LA ++ + +N                  
Sbjct: 508 LIQAIDRSRQNSVERLITALGIRGVGAKAAKVLAAHFKNLRNLQNA----------GAEE 557

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFT 655
           +  +  VG ++A AI +++ +      +  L              V  +    NK++V T
Sbjct: 558 IAEIDGVGQVMADAIRQYFNSESVASLINELENFQVNFDYLTTSTVDEKNYFFNKRIVLT 617

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G L    R + Q ++ + GA VS+ +S KTD++I G + GSKLE+A +LG+K++NE+ F+
Sbjct: 618 GKLIHWTRPQMQAWLEEHGANVSSSVSSKTDLLIAGSDVGSKLERANKLGIKVINEQDFI 677

Query: 716 FL 717
            L
Sbjct: 678 NL 679


>gi|220904693|ref|YP_002480005.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254781312|sp|B8J0Q0|DNLJ_DESDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219868992|gb|ACL49327.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 712

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 235/728 (32%), Positives = 370/728 (50%), Gaps = 60/728 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R+ +  L  E+  H+  Y+   +P I D ++DAL R    +   +P+L      + P 
Sbjct: 24  EERRRVQWLTAELERHNHLYHTLDRPEISDDQFDALFRELQDLETRWPEL---RSLHSPT 80

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF--FTLEPK 133
            ++GG +   L K  HS+    L+ +++    ++F  R+ R W    +  +   F  +PK
Sbjct: 81  LRVGGGLLEGLAKKAHSLQMYGLDNVFSAGQWQEFAERMARAWGGDVNGPLPESFWCDPK 140

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV--LSLNIPEIIEVRGEV 191
           +DG  + I Y  G    A  RGDG  GE V+  +R I T+P         P  +EVRGEV
Sbjct: 141 LDGLALEIIYADGVLQEALTRGDGEVGEVVTDAVRTIRTVPLRLAGPGPFPARLEVRGEV 200

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLG---KTS 247
            + KNDF  LN++  A+G K +ANPRNAA+G LR+L+   I      F  + LG    T 
Sbjct: 201 VMYKNDFAVLNEKQEALGLKTFANPRNAAAGTLRQLDTAIIGSRPLRFLAYSLGQALWTP 260

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 Q E++ ++R  GF      R  ++   +  Y   ++  R+  P +IDG V K+D
Sbjct: 261 APVCLLQSEVMSRLREYGFLTPPDGRLCSSVAEVEEYAQWVREHRAAFPMEIDGAVAKLD 320

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               Q+ LG  AR+PR+ ++ KF  + A T L DI+IQ+GRTG+LTPVA LEPV++GG +
Sbjct: 321 NLEAQQALGFTARAPRFAVAFKFPAELAQTLLKDIEIQVGRTGVLTPVAMLEPVSVGGVM 380

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ ATLHNED I+            RD+RVGD V+V+RAG+VIP+VV  ++ +R  +A+ 
Sbjct: 381 VSRATLHNEDEIR-----------NRDVRVGDTVMVRRAGDVIPEVVGPVLEKRPENARE 429

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           + FP  CP C     R+         AA RC   +ACSA +L  + HFVS+   +I G+G
Sbjct: 430 YVFPHTCPACGQPAYREEGE------AAWRC-ENMACSAIRLRAITHFVSKAGLDIAGVG 482

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ ++        +  ++ PAD+FTL  ++     ++  +L    V             +
Sbjct: 483 QKWIEQLV----TSGRVQSPADLFTLTVQELLGFERMGEVLAHKFVDALARAVH-----S 533

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +L R I +LGIRHVG + AR+LA ++ +                    +L+ +P VG  
Sbjct: 534 ATLPRLISALGIRHVGEQTARTLALHFETLDELENA----------GAETLLSLPDVGPE 583

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-----------VSSEIENKKLVFTG 656
           +A +I  F+ +P N   +E          G                 S  +  K ++FTG
Sbjct: 584 VASSIHNFFNSPANREQLERFRALGLWPRGGRSGGGSSGSTGEGGLASGPLAGKNILFTG 643

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  + R +A++     GA     +S+K D ++ G+  GSKLEKAQ LGV ++ EE+F+ 
Sbjct: 644 TLS-MPRSEAEKLAETAGATPLGGVSKKLDYLVAGEKAGSKLEKAQALGVTVLTEEEFMT 702

Query: 717 LLQQYNTT 724
           +L++    
Sbjct: 703 MLREAKAA 710


>gi|160934306|ref|ZP_02081693.1| hypothetical protein CLOLEP_03177 [Clostridium leptum DSM 753]
 gi|156866979|gb|EDO60351.1| hypothetical protein CLOLEP_03177 [Clostridium leptum DSM 753]
          Length = 661

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 219/721 (30%), Positives = 350/721 (48%), Gaps = 73/721 (10%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + +E ARK    L ++++YH   YY+   P I D EYD + R  + I  A+P+L      
Sbjct: 1   MDLENARKSAEELRKKLNYHAKKYYEEDNPEITDYEYDMMLRELEGIELAYPELV---TE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG        VTH +P  SL   ++ E+L  F  ++           + + +E
Sbjct: 58  DSPTQRVGGAALNKFTPVTHEVPMESLHDSFSEEELFDFDRKVREVV-----PKVSYVVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK DG  +++ Y  G FV  + RGDG  GEDV+  +R I TIP+ L+      +EVRGEV
Sbjct: 113 PKFDGLSVSLEYRNGIFVRGSTRGDGSVGEDVTENLRTIKTIPKKLT-RAVPFLEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF 250
           Y+S   FL L +       KP+ NPRNAA+G LR+ +      R L+ +V  + +   + 
Sbjct: 172 YMSNESFLKLLERQELNEEKPFKNPRNAAAGSLRQKDSRITAQRELDIYVFNIQQIEGVV 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  +  LGF         +    +V     +   R    + +DG V KV+ F 
Sbjct: 232 LNTHKESLDYLTELGFHTPPFYNCYDDMDDVVKEIQRIGEQRGGFSFPVDGAVIKVNAFH 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ +G  ++ P+W  + K+  ++  T LLDI+I +GRTG+LTP    EPV + G  ++ 
Sbjct: 292 DRELIGSTSKFPKWAEAFKYPPEEKETALLDIEINVGRTGVLTPTGLFEPVLLAGTTVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED+IK            +DIR+GD V++++AGE+IP+VV +  +   PD++P+  
Sbjct: 352 ATLHNEDFIK-----------EKDIRIGDTVVLRKAGEIIPEVVSVKAH--KPDSKPYQM 398

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S+V R+         AA RC     C AQ L  L HFVSRDA ++EGLG   
Sbjct: 399 PEHCPSCGSKVQREPGE------AALRCDNTQ-CPAQLLRHLIHFVSRDAMDMEGLGPAV 451

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+     +     +  P D+++L +        + ++   G+ S  NL +++ K +    
Sbjct: 452 LEQLVAHQ----LVSSPVDLYSLNKE------ALVDLERMGEKSAENLLNAVEKSKGNDF 501

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI++LGIRH+G   A+ L + + +     +               +  +   G I+A+
Sbjct: 502 YRFIYALGIRHIGLRAAKLLTQRFPTIDQILKAPP----------EEIAAIDGFGQIMAE 551

Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +   ++  P     +++   K V+      E++       K  V TG L    R +A + 
Sbjct: 552 SAAYYFSLPETRKLIDSFRTKGVNLESFEKEESKDLRFSGKTFVLTGALPTYTRAEAGKM 611

Query: 670 VTQLGA-----------VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +   G                        ++ G+  GSKL KAQ+LGV I++EE+FL +L
Sbjct: 612 IEDRGGKVSSSVSKKTS-----------FVLAGEEAGSKLTKAQKLGVPIISEEEFLAML 660

Query: 719 Q 719
           Q
Sbjct: 661 Q 661


>gi|152992057|ref|YP_001357778.1| NAD-dependent DNA ligase LigA [Sulfurovum sp. NBC37-1]
 gi|166216278|sp|A6Q7G2|DNLJ_SULNB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|151423918|dbj|BAF71421.1| DNA ligase, NAD-dependent [Sulfurovum sp. NBC37-1]
          Length = 648

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 208/701 (29%), Positives = 356/701 (50%), Gaps = 57/701 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            E     + +      YY    P+  D EYD L           PD       + P  ++
Sbjct: 4   DEYKEKVKTLKKWAYAYYVEDNPVATDEEYDRLYHEVLDYEMKHPD---KALEDSPTKRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +     K  H     S+E +++ E+++ ++ R+ +     +     +  EPK DG  
Sbjct: 61  GGIVRDEFTKAKHIKRMWSMEDVFSKEEVQDWLDRVEK-----NVGECDYFCEPKFDGAS 115

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + Y+ GK + A  RGDG  GE+V+  +R I ++P  L ++   +IE+RGEV I K+DF
Sbjct: 116 MNLLYDDGKLLRAITRGDGVVGEEVTDNVRTIRSVP--LVIDYKGLIEIRGEVVIRKDDF 173

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
             +N+E +  G  P+ANPRNAA+G LR+L+ +    R L F+  G+G  + +  K   E 
Sbjct: 174 EQINEERLKAGEAPFANPRNAAAGSLRQLDSSVTAKRRLVFYPWGIG-ENTLDQKKLSEK 232

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           ++ +   GF         +T   I  +Y  + S R  +P  +DG+V KVDE   Q++LG 
Sbjct: 233 MEFIYGQGFLRPPYHEACHTIDNIEKFYQFLISKRDEIPMMMDGMVIKVDEIEKQEELGY 292

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             + PRWM ++KF   +  T++  I +Q+GRTG++TPVA +EPVNI GA+++ ATLHN D
Sbjct: 293 TVKFPRWMCAYKFPAVEKVTQIRAITLQVGRTGVITPVAEIEPVNIEGAMVSRATLHNFD 352

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +DIR+GD V++ R+G+VIPK+  ++++ R  D  P   P+ CP C
Sbjct: 353 EIER-----------KDIRIGDHVIIIRSGDVIPKITKVLIDRRTGDEIPVERPTHCPTC 401

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++ +          A      L C  + +  + HF  +   +I+GLG + ++   K 
Sbjct: 402 GSELLDEG---------ALIKCQNLECPDRVINTIIHFAKKGCMDIDGLGSKIVEQLVKE 452

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I    D+++L            ++ GF +  ++NL D+I   +   L R I ++
Sbjct: 453 ----GKIHDILDLYSLTYEDL------ADLEGFKEKKISNLLDAIAASKGAPLHRLITAM 502

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI H+G   +R+LA  +             +   +  +  ++ +  +G+ +A +++EF +
Sbjct: 503 GIEHIGEVASRALALEFG------------LGIVDAKYEDIVAIDGIGEEMANSLLEFMR 550

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
              N   V  L   + P++ +  +   +  + K +V TGT+ +  R K +E + +LGA V
Sbjct: 551 V--NREKVLKLFNTIKPTVEKKVEAKENPFKGKIVVLTGTMSE-SRGKIKEMLEELGAKV 607

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           S  +S+KTD +I G++ GSKL KA+ LGV  + E++   +L
Sbjct: 608 SGSVSKKTDFVIYGEDAGSKLTKAESLGVPTLTEDEMRAML 648


>gi|310644240|ref|YP_003948999.1| DNA ligase, nad-dependent [Paenibacillus polymyxa SC2]
 gi|309249191|gb|ADO58758.1| DNA ligase, NAD-dependent [Paenibacillus polymyxa SC2]
          Length = 671

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 206/714 (28%), Positives = 337/714 (47%), Gaps = 60/714 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            +  L  E++ ++  YY    P I D EYD L     A+       +    P+ P  ++G
Sbjct: 6   RMEQLVAELNTYNYHYYTLDDPQISDKEYDVLYDELVALEQT----SGLVLPDSPTQRVG 61

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-------FTLEP 132
           GE+        H  P  SL+K  N+E LR +  R+ +     +  +         + +E 
Sbjct: 62  GEILKGFTPHRHLAPLWSLDKAQNMEQLRAWNARVVKLVNDYNTKNPEQPLPSPGYAIEL 121

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K DG  + + Y  G+ V A+ RG+G  GE + A ++ I ++P  +       IEV+GE  
Sbjct: 122 KFDGLTLNLTYTDGQLVQASTRGNGVVGEGILAQVKTIKSVPLKIP-FQNGTIEVQGEGI 180

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           ++ +     N++ +    +P  N RNAA+G LR LNP     R LN F + +G    I  
Sbjct: 181 MNLSVLSNYNEKAV----EPLKNARNAAAGALRNLNPKVTAERRLNAFFYNVGYADRIQF 236

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               EM+  +R   F VN  +   + F  ++    E++  R+ L Y IDG V K+ +   
Sbjct: 237 NSHQEMMTFLRENHFKVNPYLTYFDNFDDVMEQLIEIEESRAGLDYLIDGAVLKITDMRT 296

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           ++ LG   + PRW +++KF  ++ +T L  ++  +GRTG +TP+AR+EPV + G  + N 
Sbjct: 297 REVLGYTDKFPRWAVAYKFEAEETTTVLNSVEWNVGRTGKITPLARVEPVELAGVTVQNC 356

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TL+N          G + R      +G RV ++R+ +VIP+++  + +E   +      P
Sbjct: 357 TLNNA---------GDIERKNLKFALGARVFIRRSNDVIPEILGKVTSENDGEE--IVVP 405

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C   + +          A   C   L C  Q + R+ HF SRDA +IE    +  
Sbjct: 406 EHCPACGFPLQQR--------GAHLFCDNKLGCKPQIVARISHFASRDAMDIETFSDKTA 457

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                       +R PAD++TLQ            +  FG+    NL  ++ K +   L 
Sbjct: 458 IQLHDE----LGVREPADLYTLQYDDLVK------LERFGEKKANNLLAALEKSKERDLA 507

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            F+++LGI + G    R LA++Y                       LI +P VG I+A++
Sbjct: 508 SFLYALGIPNTGKATTRMLAEHYRDLHKTMSAT----------VDELIELPDVGGIVAES 557

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE---KNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           IV F+ +P     +E +L     +        K + S    K +V TGTL ++ R +A  
Sbjct: 558 IVAFFADPFTQAGIEKMLSLGVKAQAPEAPQVKKIDSFFSGKTVVLTGTLHQLTRDEAAS 617

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQY 721
            +  LGA V+  +S+KTD++I G+  GSKL KAQQLG+  + +E++F+ LL+Q 
Sbjct: 618 RLEALGAKVAGSVSKKTDLVIAGEKAGSKLAKAQQLGIDTIEDEDEFIRLLEQE 671


>gi|312880304|ref|ZP_07740104.1| DNA ligase, NAD-dependent [Aminomonas paucivorans DSM 12260]
 gi|310783595|gb|EFQ23993.1| DNA ligase, NAD-dependent [Aminomonas paucivorans DSM 12260]
          Length = 696

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/729 (31%), Positives = 354/729 (48%), Gaps = 75/729 (10%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
             + A   +  L ++I  HD  YY    P++ D  YDAL R   ++  A PDLA   DP+
Sbjct: 9   DRDAAASRIRELTEQIRLHDHRYYVLDDPVLPDDAYDALLRELRSLERAHPDLA---DPD 65

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++GG       KVTH +P  SL+   + E+L  F+ R+ +   ++    +    EP
Sbjct: 66  SPTGRVGGSPKEEFRKVTHPVPLQSLDNALDREELAAFLQRLRQGLGRE---EVPVVCEP 122

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  +T+RY  G+FV  A RGDG  GEDV+  +R + ++P  L+L +P  +EVRGEV+
Sbjct: 123 KIDGLAVTLRYRDGRFVQGATRGDGRVGEDVTENLRTLRSLPLRLALPVPGELEVRGEVF 182

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           +++ DF  LN      G  P+ANPRNAA+G LR+L+P     R L  F++ +        
Sbjct: 183 MARGDFGELNVRREEEGEPPFANPRNAAAGALRQLDPRITAQRRLRLFLYHVVDPLARGI 242

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q  +L+ +R +GFP      +  +   I ++ +     R       DG+V K+D+ + 
Sbjct: 243 TTQGALLEWLREVGFPTQGEWARCTSPGEIGTFLDRWDQKRHEHLAQTDGVVVKLDDLAA 302

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           ++ LG   R+PRW I+ K+  ++  TR+ DI+I +GRTG+LTP A LEPV + G ++  A
Sbjct: 303 RETLGSTNRAPRWAIAFKYPPEERPTRVRDIEISVGRTGVLTPTAVLEPVRLSGTVVQRA 362

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN D +             +D+R+GDRV V++AGE+IP+VV +    R     PF  P
Sbjct: 363 SLHNPDEVAR-----------KDVRIGDRVFVRKAGEIIPEVVRVDREARDGSESPFVPP 411

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP C S  VR       +           +C AQ  E L+HF SR   +I GLG++  
Sbjct: 412 SACPACGSEAVRLEGEVALR-------CPNRSCPAQLKEGLRHFASRGGLDIRGLGEK-- 462

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
               +       +R  AD+F +             +   G  S  NL +++   ++  L 
Sbjct: 463 --LLEQAVDVGLVRDAADLFLVTED------AWAALDRMGAASARNLKEALEVAKDRPLR 514

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +F+LGIR+VG  +A  LA  + S +                  +L  V  VG ++A A
Sbjct: 515 KLLFALGIRNVGDRLAADLAGRFGSLEALEACSE----------EALAAVEGVGPVVAAA 564

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRH----- 664
           +  F+++  N   +  L +         E+           KLVFTG L+   R      
Sbjct: 565 VRAFFRDGHNRETLRRLREAGVRMEDPQEEKAPGGLPWAGWKLVFTGELESCPREAAQEA 624

Query: 665 ---------KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
                    +               +SRKT  ++ G   GSKLEKA++LG+ + +E +FL
Sbjct: 625 ARARGAQTGE--------------SVSRKTTAVVAGARAGSKLEKARKLGIPVWDEARFL 670

Query: 716 FLLQQYNTT 724
            LL++   T
Sbjct: 671 ELLREAEET 679


>gi|18311241|ref|NP_563175.1| NAD-dependent DNA ligase LigA [Clostridium perfringens str. 13]
 gi|18145924|dbj|BAB81965.1| DNA ligase [Clostridium perfringens str. 13]
          Length = 665

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 210/715 (29%), Positives = 354/715 (49%), Gaps = 58/715 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S    +K +  L +E++ +   YY      + D +YD        +          + P
Sbjct: 1   MSKMDKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLP 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNS 125
             P  ++G  +     K TH     SL+K   +E++R++  R  +F ++      ++   
Sbjct: 57  YSPTQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPP 116

Query: 126 IFFTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
           + + L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + 
Sbjct: 117 LKYILTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDF 174

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL 243
           +E+ GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +
Sbjct: 175 LEIHGEAIMTTEAFEKYNSEA----ETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDV 230

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G       K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV
Sbjct: 231 GYKEGAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLV 290

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
             +D+   +  LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV +
Sbjct: 291 IAIDDIRTRDLLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVEL 350

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  ATL+N D I             + +R+G  V V+R+ +VIP+++ ++      
Sbjct: 351 AGVTVKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LE 398

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             +    P  CP C + +V +             C   L C  Q ++ + HF  R+A NI
Sbjct: 399 GTKEIEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNI 450

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            G  ++  +  F+  D    IR  +D++ L+        K+ ++  FG     NL D+I 
Sbjct: 451 AGFSEKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIE 500

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K ++ +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  
Sbjct: 501 KSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQD 550

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           VGDI+A++I+EF++  R +  +  LL          ++ + S    K +V TGTL+   R
Sbjct: 551 VGDIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSR 610

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              +E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F  ++
Sbjct: 611 TSIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 665


>gi|146329194|ref|YP_001209306.1| DNA ligase, NAD-dependent [Dichelobacter nodosus VCS1703A]
 gi|166215582|sp|A5EVZ5|DNLJ_DICNV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146232664|gb|ABQ13642.1| DNA ligase, NAD-dependent [Dichelobacter nodosus VCS1703A]
          Length = 678

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 249/702 (35%), Positives = 388/702 (55%), Gaps = 46/702 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              EL +L Q I  H+  YY    P I DSE+DAL ++  A+  A          + P  
Sbjct: 8   IAAELEALRQTIRAHEYAYYVLEAPNIADSEFDALMQKLRALEAASG---LPIPADSPTQ 64

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG+ +     V H I  LSL+ ++N ++   F  R+          +I    EPK DG
Sbjct: 65  RVGGKADNRFRNVAHHIAMLSLDNVFNADEFADFYRRLQEQLS--PTTAISLIAEPKFDG 122

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             I +RYE G    A+ RGDG +GEDV+  +R I TIP  L+ +  P++IE+RGE+Y+ K
Sbjct: 123 LAINLRYENGILQRASTRGDGITGEDVTQNVRTISTIPLRLNTHTPPDVIEIRGEIYMPK 182

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKG 253
             F ALN++  A G K +ANPRNAASG LR+L+P     R L FF +G G+ +     + 
Sbjct: 183 KAFYALNEQAAANGEKIFANPRNAASGSLRQLDPRITARRQLAFFAYGYGEITNYQLPET 242

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
              +L++ R    PV +  ++A T    ++ Y +    R  LP+DIDG+V+KV+ F+ Q+
Sbjct: 243 YEALLEQYRAWHIPVCSLHQKAATLPEALAAYQQFAKQREQLPFDIDGVVFKVNRFADQQ 302

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           + G  AR+PRW I+ KF   + +TR+  I++Q+GRTG +TPVARL+PV I G ++ +A+L
Sbjct: 303 RAGFLARAPRWAIAWKFPALEKTTRIEAIELQVGRTGAVTPVARLQPVTIAGVVVRSASL 362

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN   I             +DIRVGD + ++RAG+VIP+VV +++ +R PDA  F+ P  
Sbjct: 363 HNAREIAR-----------KDIRVGDTIFIRRAGDVIPEVVSVVLEKRLPDAPVFAMPEH 411

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C + +V++ +       A  RC+GGL C AQ++  L HF SR+A +I GLG++ +  
Sbjct: 412 CPVCAAAIVQNEDE------AVARCSGGLHCPAQRVAALIHFASREALDIRGLGEKLIQQ 465

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
               E     +R PAD+F L      S      +   G  S  N+  +I+  +  +L RF
Sbjct: 466 LVAQE----FVRTPADLFCLTADDWAS------LPRMGKKSAHNVMTAIDAAKKTTLARF 515

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGIR VG+  A++LA ++              A    D  +L  +  +GD++A  I 
Sbjct: 516 IYALGIRGVGSVNAQALAAHFGDL----------AAFMAADRAALQEIEGIGDVVAADIE 565

Query: 614 EFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            F+ +  N   + A++      S    +K + + +  K +V TGTL  + R +AQ+ +  
Sbjct: 566 HFFADEDNRAVIAAIVAAGVHWSTELTKKIIDAPLLGKTVVITGTLPSLSRAEAQKRLET 625

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           LGA V++ +SR+TD +++G + GSKL +AQ   V I++E Q 
Sbjct: 626 LGAKVTSQVSRQTDFLLLGADAGSKLARAQAFSVPIIDEAQL 667


>gi|218885555|ref|YP_002434876.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|254781315|sp|B8DJT6|DNLJ_DESVM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218756509|gb|ACL07408.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 808

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 234/739 (31%), Positives = 366/739 (49%), Gaps = 74/739 (10%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
            +L  +++YH   YY      I D+EYDAL R    I   +P L     P+ P +++G  
Sbjct: 38  EALRDQLNYHSHRYYVLDDAEISDAEYDALFRELQDIEAEWPSL---RTPDSPTHRVGDT 94

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
           +  +L    H++   SL+  ++ E+   +   I R  + + D    F  +PK+DG  + +
Sbjct: 95  VVAALETQAHTLRMYSLDNAFSAEE---WDGFIQRMLRAEPDAPTAFWCDPKMDGLALEV 151

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEVYISKNDFL 199
            YE G F  A  RGDG  GE V+  +R +  +P  L      P  +EVRGEV I++ +F 
Sbjct: 152 IYENGVFTTALTRGDGEKGEIVTTAMRTVRNLPLRLHGEGPHPARLEVRGEVVITRAEFD 211

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI--------- 249
           ALN      G K +ANPRNAA+G +R+L+ +    R L F  +G+G+             
Sbjct: 212 ALNAARRGAGEKLFANPRNAAAGSVRQLDASVTAGRPLRFLAYGVGQVVWPAETSDGAAS 271

Query: 250 -------FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
                        +++  +   GF      R+  T   +++YY ++   RS LP+DIDG+
Sbjct: 272 AAQGPEARWATHGQVMAALADYGFGTPPDARRCETPAQVMAYYEDLGRRRSELPFDIDGV 331

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V K+D+ S Q  LG  AR+PRW I+ KF   QA+TRL  I IQ+GRTG+LTPVA L PV 
Sbjct: 332 VAKLDDLSAQAALGYTARAPRWAIALKFPAHQATTRLEHIAIQVGRTGVLTPVAELAPVA 391

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG  ++ ATLHNED I+            +D+RVGD V+V+RAG+VIP+VV  +V++R 
Sbjct: 392 VGGVTVSRATLHNEDEIR-----------AKDLRVGDMVVVQRAGDVIPEVVRPLVDQRP 440

Query: 423 PDA-QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
                 F FP+ CP+C + V R+         AA RC     C A   + + HFVS+   
Sbjct: 441 ASGLPEFEFPAECPVCHTPVRREPGE------AAWRCVNV-GCPAVVRQSIIHFVSKAGL 493

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I+G+G++ ++           +  PAD+F L +        +      G     N   +
Sbjct: 494 DIQGVGRRWVELLVDR----GKVTSPADLFGLDK------QTLLAFERMGPKLAENFIAA 543

Query: 542 INKRRN-ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
            +  R   +L R I +LGIRHVG + AR+LA ++                      +L +
Sbjct: 544 FDTARTGATLNRLICALGIRHVGEQTARTLAAHFADLDALGAA----------QAETLQQ 593

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---------SEIENKK 651
           +P +G  +A +I  F+ N  N   +E L       +                   +   +
Sbjct: 594 LPDIGPEVAASIRAFFANEGNRALLERLRGVGLWPVRPVRPEADAAGAPGEGSGPLAGLR 653

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           ++FTG+L  + R  A+      GA +   +S+K D+++VGD PGSKL+KA +LG++++ E
Sbjct: 654 VLFTGSLTTLTRSDAERRAVAAGANILGSVSKKLDLLVVGDKPGSKLDKATKLGIRVLRE 713

Query: 712 EQFLFLLQQYNTTLRIHDD 730
           ++FL LL+     +    D
Sbjct: 714 QEFLDLLEGRGGDVPEDGD 732


>gi|308071012|ref|YP_003872617.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Paenibacillus
           polymyxa E681]
 gi|305860291|gb|ADM72079.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Paenibacillus
           polymyxa E681]
          Length = 680

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 206/714 (28%), Positives = 337/714 (47%), Gaps = 60/714 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            +  L  E++ ++  YY   +P I D EYD L     A+       +    P+ P  ++G
Sbjct: 15  RMEQLVAELNTYNYHYYTLDEPKISDKEYDVLYDELVALEQT----SGLVLPDSPTQRVG 70

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-------FTLEP 132
           GE+        H  P  SL+K  N+E LR +  R+ +     +  +         + +E 
Sbjct: 71  GELLKGFTPHRHLAPLWSLDKAQNMEQLRAWNARVVKLVNDYNTKNPEQPLPSPGYAIEL 130

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K DG  + + Y  G+ V A+ RG+G  GE + A ++ I ++P  +       IEV+GE  
Sbjct: 131 KFDGLTLNLTYTDGQLVQASTRGNGVVGEGILAQVKTIKSVPLTIP-FRNGTIEVQGEGI 189

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           ++ +     N   +     P  N RNAA+G LR LNP     R LN F + +G    I  
Sbjct: 190 MNLSVLSKYNKTAV----DPLKNARNAAAGALRNLNPKVTAERRLNAFFYNVGYADRIQF 245

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               EM+  +R   F VN  +   + F  ++    E++  R+ L Y IDG V K+ +   
Sbjct: 246 NSHQEMMTFLRENHFKVNPYLTYFDNFEDVMEQLIEIEESRAGLDYLIDGAVLKITDMRT 305

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           ++ LG   + PRW +++KF  ++ +T L  ++  +GRTG +TP+AR+EPV + G  + N 
Sbjct: 306 REALGYTDKFPRWAVAYKFEAEETTTVLNSVEWNVGRTGKITPLARVEPVELAGVTVQNC 365

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TL+N          G + R      +G RV ++R+ +VIP+++  + +E   +      P
Sbjct: 366 TLNNA---------GDIERKNLKFALGARVFIRRSNDVIPEILGKVTSENDGEE--IVVP 414

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C   + +          A   C   L C  Q + R+ HF SRDA +IE    +  
Sbjct: 415 DHCPACGFPLQQR--------GAHLFCDNKLGCKPQIVARISHFASRDAMDIETFSDKTA 466

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                  +    +R PAD++TLQ            +  FG+   +NL  ++ K ++  L 
Sbjct: 467 IQLHDELE----VREPADLYTLQYDDLVK------LERFGEKKASNLLAALEKSKDRDLA 516

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            F+++LGI + G    R LA++Y                       LI +P VG I+A++
Sbjct: 517 SFLYALGIPNTGKATTRMLAEHYRDLHKTMSAT----------VEELIELPDVGGIVAES 566

Query: 612 IVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           IV F+ +P     +E +L             EK   S    K +V TGTL ++ R +A  
Sbjct: 567 IVAFFADPFTQAGIEKMLSLGVKAQAPEAPQEKKTDSFFSGKTVVLTGTLHQLTRDEAVS 626

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQY 721
            +  +GA V+  +S+KTD++I G+  GSKL KAQQLG+  + +E++F+ LL+Q 
Sbjct: 627 KLEAMGAKVAGSVSKKTDLVIAGEKAGSKLAKAQQLGIDTIEDEDEFIRLLEQE 680


>gi|113475951|ref|YP_722012.1| NAD-dependent DNA ligase LigA [Trichodesmium erythraeum IMS101]
 gi|123160812|sp|Q112N5|DNLJ_TRIEI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110166999|gb|ABG51539.1| DNA ligase, NAD-dependent [Trichodesmium erythraeum IMS101]
          Length = 774

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 224/812 (27%), Positives = 364/812 (44%), Gaps = 143/812 (17%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  L++E   +   +L +++      YY   +PI+ D+ YD L R    +   +P L  S
Sbjct: 1   MAKLTLE-VEQYTQNLREKLQEAGYSYYVLDQPIMEDAVYDHLLRELQELESQYPQLIVS 59

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW---------- 118
              + P  ++G +       V H+IP  SLE  +NI++L+ +  R  R            
Sbjct: 60  ---DSPTQRVGEKPATKFVSVKHNIPLYSLENAFNIQELKSWQERWQRQTLLENQRLTLP 116

Query: 119 --------------------------------QKKDDNSIFFTLEPKIDGTMITIRYEKG 146
                                            + D  S+ +  E KIDG+ + + YE G
Sbjct: 117 LRGEVKIKNSIDESDNFSTVNSLAPVITGSNFDEIDLASVDYICELKIDGSALALTYENG 176

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKNDFLALNDEM 205
             V  A RGDG  GED++  ++ I +IP      N P ++EVRGE ++S N F  +N E 
Sbjct: 177 LLVRGATRGDGIMGEDITQNVKTINSIPLKLKVDNPPLLVEVRGEAFLSINVFENINAER 236

Query: 206 IAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG----KTSEIFAKGQYEMLQK 260
             +G   +ANPRNAA+G LR+L+      R L+FF + L     +++ +    Q + L+ 
Sbjct: 237 EKIGEIIFANPRNAAAGTLRQLDSKIVAKRRLDFFAYTLYLEENESNFLQFYTQSQCLEL 296

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           ++ LGF VN   +  ++ + + +YY      R  LPY  DG+V K++  SLQ++LG   +
Sbjct: 297 LKKLGFKVNPNGQVCSSLNEVEAYYQYWDKQRENLPYLTDGVVVKLNSLSLQEKLGFTQK 356

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
            PRW I+ K+  ++  T +  + +Q+GRTG +TPVA L+PV + G  +  A+LHN D + 
Sbjct: 357 YPRWAIALKYPAEEIPTIVQGVTVQVGRTGAITPVAELKPVQLAGTTVQRASLHNSDRLA 416

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
            L           D+ +GD V+V++AGE+IP+VV ++   R   AQ F  P+ CP C   
Sbjct: 417 EL-----------DLHIGDTVIVRKAGEIIPEVVRVLPELRPKKAQRFQMPTHCPECSQP 465

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           +++  N       A  RC    +C A     L H+ SR A +I GLG++ +     S   
Sbjct: 466 LIKPRNE------AVTRCINT-SCPAILRGSLAHWASRAALDINGLGEKLVQQLVNS--- 515

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
              ++  AD++ L     TS      +   G  S   L +++   +     R ++ LGIR
Sbjct: 516 -GLVKSVADLYNLTMEDLTS------LERMGKKSANKLIEAMGTSKAQPWRRVLYGLGIR 568

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           HVG   A  L + + +    +Q               +  V  +G  IAQ + ++++ P 
Sbjct: 569 HVGTVNAELLTQKFPTVAQLSQA----------KATDIETVHGIGPEIAQYVEQWFRVPA 618

Query: 621 NICAVEALLKEVSPSIGRHEKN-------------------------------------- 642
           N   VE L         +   +                                      
Sbjct: 619 NQNLVERLKIAGVTMETKDSTSGMAKLTETVLAIQNLAARQNLVARQNLENLVERLKIAG 678

Query: 643 ---------------VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
                           S  +  K  V TGTL  ++R +A+  +   G  V++ +S KTD 
Sbjct: 679 VTMETKDSTSDVVEVQSGLLRGKTFVLTGTLPTMRRDEAKNLIQNAGGKVTSSVSSKTDF 738

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           I+VG++ GSKLEKA++LGVK ++E + L  L 
Sbjct: 739 IVVGEDGGSKLEKAKKLGVKELSESELLEALA 770


>gi|226356158|ref|YP_002785898.1| DNA ligase (NAD(+)) [Deinococcus deserti VCD115]
 gi|254778151|sp|C1CVC7|DNLJ2_DEIDV RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|226318148|gb|ACO46144.1| putative DNA ligase (NAD(+)) [Deinococcus deserti VCD115]
          Length = 686

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 218/710 (30%), Positives = 347/710 (48%), Gaps = 46/710 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
               +L  E++ H+  YY+   P I D EYDAL R    +    P+       + P+  I
Sbjct: 11  ARYLALRAEVARHNRAYYEQDAPEISDDEYDALARALRDMEARHPEWVED---DSPVQTI 67

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSIFFTLEPKIDGT 137
           GG  + +   V H  P  SL+ +++ ++LR++  ++ R      + +   FT E KIDG 
Sbjct: 68  GGAPSAAFEPVAHLTPMTSLDNVFDADELREWQEKLARSLNLPPESDDFTFTGEIKIDGL 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + Y  G   +AA RG+G  GE V+A +  IP IP+ L       +EVRGEVY+S+ D
Sbjct: 128 SVNLYYLDGTLQWAATRGNGRVGEMVTAQVLTIPGIPQHLDGL-KGQLEVRGEVYLSRAD 186

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F A N +   +G     NPRN A+G LR+ +P    TR L    + LG+   + A+ Q E
Sbjct: 187 FAAFNAQAEELGTPLLKNPRNGAAGALRQKDPEVTRTRNLKAIFYSLGRRDGVEARTQSE 246

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +LQ +   GFPV++       +     Y+  M   RS   +D DG V K+D  +LQ++ G
Sbjct: 247 VLQWLAGRGFPVSHYSETFRGYVAAADYHRRMTEARSNFEFDADGTVIKLDPLALQEEAG 306

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW I+ KF  +Q  T L  I + +GRTG L P+A L P  I G+ ++ ATLHNE
Sbjct: 307 FTSRAPRWAIAFKFPVEQVETVLESITVNVGRTGKLAPLAHLAPRLIEGSTVSKATLHNE 366

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI+ +           D+RVGD V+V+++G VIP+++ ++  +R     PF FP++CP 
Sbjct: 367 DYIRQM-----------DLRVGDTVVVRKSGGVIPQIMRVVTEKRPEKTTPFVFPTYCPE 415

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C   V R          A   C    AC AQ+ ER+++FVSR A ++ G+G++       
Sbjct: 416 CGHEVTRAEG------DANTYCPNP-ACPAQRFERIRYFVSRGAMDVRGIGEK----LVI 464

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +R  AD++ L   Q         +   G+    N+   +   +   L R I +
Sbjct: 465 QVIETGLVRDAADLYLLTAEQLAG------LERGGEKKAQNVLAQLEASKTRPLWRLINA 518

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG+ HVG   A++LA+ + S     +               +  VP +G + A ++    
Sbjct: 519 LGMTHVGERNAQALARAFGSLDALLRATP----------EQIEAVPGMGKVTAVSVSAAL 568

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            +P     +E L      S    +     ++     V TG+L +  R + +  +   GA 
Sbjct: 569 ADPTMRNLIERLRAAG-MSPEETQTVRGEQLAGLNFVITGSLSQ-PRDELKALLEAAGAR 626

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           V+  ++RKT  +I G + GSKL++A++L V +++E     LL Q    L 
Sbjct: 627 VTGSVTRKTSYLIAGQDAGSKLDRARELAVPVLDEAALGTLLHQRGVQLP 676


>gi|195977913|ref|YP_002123157.1| NAD-dependent DNA ligase LigA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|254781421|sp|B4U2C7|DNLJ_STREM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|195974618|gb|ACG62144.1| DNA ligase LigA [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 652

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 214/703 (30%), Positives = 349/703 (49%), Gaps = 55/703 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DSEYD L R    +   +P        + P   
Sbjct: 2   KKRIRELTDLLNQYRQEYYTNDAPSVSDSEYDKLYRELVELEQTYPAYILK---DSPTQL 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  RI             +  E KIDG 
Sbjct: 59  VGGTILTGFQKYQHQYPLFSLQDAFSREELNAFDQRIK-----SAFPEAEYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG  GE+++  I+ I  IP    L+    + +RGE Y+S+  
Sbjct: 114 SISLVYEAGILKVGATRGDGTIGENITENIKNIKDIP--KRLSQALDVTIRGEAYMSRKA 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD--ITRYLNFFVHGLGKTSEIFAKGQY 255
           F  +N+E    G   +ANPRNAA+G LR+L+       +   F    +G      A  Q 
Sbjct: 172 FKTINEERQENGEPEFANPRNAAAGTLRQLDTRIVAKRQLATFLYQEVGL---EAADSQQ 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
             L+++  LGF VN+    +++ + I  +   +++ R  LPY+IDG+V KV++ ++Q++L
Sbjct: 229 RTLERLADLGFSVNSHYLLSSSMNDIWDFIQSIEATREELPYEIDGVVVKVNQLAIQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++PRW I++KF  ++    ++ +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEIVSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR+GD V+V +AG++IP V+ ++  +R  +  P   P+ CP
Sbjct: 349 VDYI-----------AEKDIRIGDTVVVYKAGDIIPAVLRVVEAKR-SNQTPMPIPTACP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            CQS++V   +        A RC   L C +     L+HF SR A NI GLG   ++  +
Sbjct: 397 SCQSQLVHFEDE------VALRCINPL-CPSLIQRSLEHFASRQAMNIAGLGPAVVEKLY 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                A  +    DI+ L             + G  + S   L  +I + +  S E+ +F
Sbjct: 450 S----AGLVHDVTDIYRLSLEDL------LMLDGIKEKSAEKLLAAIEQSKANSAEKLLF 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIRH+GA+ +R + + Y   +                   L ++  +G +I Q++V++
Sbjct: 500 GLGIRHIGAKASRLILETYGDLETLLSVT----------AEELAQIDGLGLVIGQSLVQY 549

Query: 616 YQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +Q  +    +  L              +  +E+    +V TG L+K+ R +A+E + QLG
Sbjct: 550 FQQDQATQLLAELKSAGVNLAYLGQRPDRQAELFGLTVVLTGKLEKLNRTQAKEKLEQLG 609

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           A V+  +S+KTD+++ G   GSKL KAQQLG++I +E+  L L
Sbjct: 610 AKVTGSVSKKTDLVVAGSEAGSKLAKAQQLGIRIEDEDWLLNL 652


>gi|292670878|ref|ZP_06604304.1| DNA ligase [Selenomonas noxia ATCC 43541]
 gi|292647499|gb|EFF65471.1| DNA ligase [Selenomonas noxia ATCC 43541]
          Length = 673

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 217/709 (30%), Positives = 352/709 (49%), Gaps = 44/709 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
            I++ + EL+ L ++I  +   YY  +   I D ++D L +R  AI   +P+L      N
Sbjct: 3   DIKEIKNELTELRKKIRKYSKQYYDENASDISDYDFDLLMQRLKAIEAEYPELI---TKN 59

Query: 73  GPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P  K+GG     +   V H +P LSL+ +++ +++R F+T +          S  F +E
Sbjct: 60  SPTQKVGGTAQREVGVLVPHDVPMLSLQDVFSEDEIRTFVTGV-----LSHFPSAEFVVE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
            KIDG  + +RYE G  V A  RGDG   GEDV+   RAI  +   L  ++P   EVRGE
Sbjct: 115 EKIDGLSLALRYENGALVRAITRGDGVVQGEDVTLNARAISDVVETLHDSVPY-FEVRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+ +  F  +N+    +G KP+ANPRN A+G LR+L+      R L+ FV  L +    
Sbjct: 174 VYMERAAFAEVNERQELLGLKPFANPRNCAAGTLRQLDARVTKERKLSMFVFNLQRAEGH 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 +    MR  G  +       +T   + +    + + R  LPYDIDG V KV++F
Sbjct: 234 SFTSHTDAYDFMRAQGIKIIANYNVCHTADEVWNAIMAIGARRGDLPYDIDGAVVKVNDF 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + + +LG  A++PRW I++K+  ++  T L +I++ +GRTG +TP A  +PV + G  + 
Sbjct: 294 AQRAELGTTAKAPRWAIAYKYPPEEKETILRNIELSVGRTGRITPTAVFDPVQLCGTRVE 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+DYI  L           D+R+GD +LV ++GE+IP+V  +I  +R  +  PF 
Sbjct: 354 RATLHNQDYIDSL-----------DVRIGDTILVYKSGEIIPRVKAVIKEKRPKNTPPFV 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
               CP+C S  VR+ +       A  +C    AC AQ    + +FVSR+A +I+G G+ 
Sbjct: 403 IGDQCPVCGSHAVRETD------TADMKC-QNPACPAQVENHILNFVSRNAMDIKGFGES 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +         A  +   ADI++L   +    +         + SV N   +IN+ +  +
Sbjct: 456 AIIALTH----AGYLHDIADIYSLHLHRNELISSGLI---GREKSVDNRLAAINESKANT 508

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            +R +  LGI  +G   A SL + + S     +           D   +  VP +G+I  
Sbjct: 509 PDRLLTGLGISGIGRAAAVSLMQAFPSIDALQETACT-------DPEKIRAVPDMGEISV 561

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           Q + EF+ +      ++              K   + ++ K  V TGTL  + R +    
Sbjct: 562 QKLTEFFTSETGRALLDKFRAAGVNFASTPMKPAGAALDGKSFVITGTLPTLSREECASL 621

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +T  G  V + +S+KTD ++ G+  GSKL+KA+ LG+ I++E     ++
Sbjct: 622 ITSHGGTVKSSVSKKTDYLVAGEAAGSKLQKAEDLGIPILDEASLRDMI 670


>gi|76801093|ref|YP_326101.1| NAD-dependent DNA ligase LigA [Natronomonas pharaonis DSM 2160]
 gi|121729348|sp|Q3ITK1|DNLJ_NATPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76556958|emb|CAI48532.1| DNA ligase (NAD) [Natronomonas pharaonis DSM 2160]
          Length = 691

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 221/723 (30%), Positives = 351/723 (48%), Gaps = 51/723 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             P++ L    A +++ +L + I +HD  YYQ + P+I D  YD L  R + +   F   
Sbjct: 17  FEPVDELDAASATRQVETLREAIRFHDYRYYQLADPVISDRAYDQLFERLERLESKFD-- 74

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-DN 124
                   P  ++GGE    L  V H  P  S+E    ++D+R F TRI         + 
Sbjct: 75  --RSSATSPTQRVGGEPLDELETVEHVAPMRSIESSVEVDDIRDFDTRIQERLAAAGYEG 132

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + +  EPK DG  + + YE+G+   AA RGDG  G+DV+A +R I ++P  L  + P  
Sbjct: 133 PVRYLCEPKFDGLSVELVYEEGELSRAATRGDGQEGDDVTANVRTIRSVPLTLDGDCPSF 192

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           + VRGE+++ K+ F   N E +  G +P++NPRNAA+G LR+L+P+    R L+ FV  +
Sbjct: 193 LAVRGEIFMPKDAFQEYNRERLERGEEPFSNPRNAAAGTLRQLDPSVTAERPLDCFVFDI 252

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                   + +    + +   GF V++   + +     +++  EM   R++L Y+IDG+V
Sbjct: 253 LDDGGRGFETRMAEHEAVESWGFQVDDHTARVDDIEAAIAFREEMLDGRASLDYEIDGIV 312

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+D       LG  AR+PRW  ++KF  +   T + DI +Q+GRTG LTPVA L+PV +
Sbjct: 313 IKLDRKDACALLGATARAPRWAYAYKFPARTEETTVRDIVLQVGRTGRLTPVALLDPVEV 372

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ ATLHN   I  L            + +GDRV +KRAG+VIP +  ++ +ER  
Sbjct: 373 SGVEVSRATLHNPQQIAEL-----------GVGIGDRVTLKRAGDVIPYIEAVVDSER-- 419

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
               F FP  CP+C+S +         +      CTGG+AC AQ    ++H+ SR   +I
Sbjct: 420 -EAHFEFPDRCPVCESPL--------ERDGPLAYCTGGVACPAQLRRAVEHYASRSGLDI 470

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG+  +D        A  +    D++ L      S   +  + G+G  S  NL + + 
Sbjct: 471 EGLGESAVDQLVD----AGLVERLPDLYDL------SVADVAELDGWGRTSAENLLEELE 520

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
                 L  F+ +LGI  VG   A  +A+ + +                     L  V  
Sbjct: 521 ASTEPPLPAFLSALGIPGVGTTTAADIAREFGTLDAVMDAT----------AEELRAVDG 570

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +G  +   I EF+ + RN   +E L K          +     +  +  VFTG+L  + R
Sbjct: 571 IGPTLGGEIAEFFDSDRNQQVIEQLRKRGV--DPEPAETAGDALSGQTFVFTGSLDGLTR 628

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +A E V   G   +  +S  TD ++VGD+PG  K E A + GV+ +++  F  LL+ + 
Sbjct: 629 EEAHELVETSGGTATGSVSGNTDYLVVGDSPGQRKREAANEHGVETLSQSDFESLLESHG 688

Query: 723 TTL 725
             +
Sbjct: 689 IEI 691


>gi|208779663|ref|ZP_03247008.1| DNA ligase, NAD-dependent [Francisella novicida FTG]
 gi|208744624|gb|EDZ90923.1| DNA ligase, NAD-dependent [Francisella novicida FTG]
          Length = 678

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 255/713 (35%), Positives = 391/713 (54%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  + +  +  L   +S     Y+   KPII DS+YD L R    + +  P        
Sbjct: 14  LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N  L+++GGE+      + H     SL  ++++E+LR F  +I           I    E
Sbjct: 71  NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P    + N PE +EVRGE
Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--S 247
           + + K  FL+LN+ M     K +ANPRNAA+G +R L+      R L  + +G+G     
Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            +  + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGLV+KV+
Sbjct: 243 FVHPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ  +G  AR P+W +++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG +
Sbjct: 303 NIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV  +   R  DAQ 
Sbjct: 363 VSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQM 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP+C S +      +     A +RCTGG  C AQ  ERLKHFVSR A +I+ LG
Sbjct: 412 VEMPTNCPVCDSAI------ENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKATDIDKLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++        A  I+ PADI+ L   Q T       +   G  S  N+ DSI K + 
Sbjct: 466 AKLIEQLV----AANLIKYPADIYKLNFDQLTG------LERMGAKSSQNVLDSIKKSKT 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFIF++GI+ +G   + +LA ++ S ++F              +  LI +  +G+I
Sbjct: 516 PSLARFIFAIGIKDIGEVSSDALANHFGSLESFRDA----------KFEELIEINDIGEI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +A  IV F+ +  NI  VE LL       +  + E   +     K +V TG+ +   R +
Sbjct: 566 MANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+    LL
Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678


>gi|329924834|ref|ZP_08279795.1| DNA ligase (NAD+) [Paenibacillus sp. HGF5]
 gi|328940396|gb|EGG36721.1| DNA ligase (NAD+) [Paenibacillus sp. HGF5]
          Length = 670

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 210/715 (29%), Positives = 342/715 (47%), Gaps = 60/715 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  E++ ++  YY   +P++ D EYDAL  +  A+            P+ P  +
Sbjct: 4   KEKMEKLIAELNNYNYHYYTLDQPLVSDKEYDALYDQLVALEAE----TGVTLPDSPTQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ----KKDDNSIF---FTL 130
           +GGE+        H  P  SL+K  NIE LR +  R+ R       K   N +    + L
Sbjct: 60  VGGEILKGFAPHRHLAPLWSLDKAQNIEQLRTWHDRVVRLVNDYNTKNPGNPLPSPCYAL 119

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K DG  + + Y+ GK V A+ RG+G  GE + A ++ I ++P  +       IEV+GE
Sbjct: 120 ELKFDGLTLNLTYQDGKLVQASTRGNGTVGEGILAQVKTIKSVPMTIPYT-EGTIEVQGE 178

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
             ++ +     N        +P  N RNAA+G LR LNP     R LN + + +G +  I
Sbjct: 179 GIMNLSVLEQYNQTA----AEPLKNARNAAAGALRNLNPKVTAERKLNAYFYNVGYSDGI 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 EM+  +R     VN  +     F  ++    +++  RS L Y IDG V KV +F
Sbjct: 235 TFADHKEMMDFLRENRLKVNPYIFYFEQFDDVMEQLADIEKRRSELDYLIDGAVVKVTDF 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            +++ LG   + PRW +++KF  ++ +T L  +   +GRTG +TP+AR+EPV + G  + 
Sbjct: 295 RIREALGYTDKFPRWAVAYKFEAEETTTVLQSVTWNVGRTGKITPLARVEPVELAGVTVQ 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           N TL+N          G + R      +G RV ++R+ +VIP+++  +  E+  +     
Sbjct: 355 NCTLNNI---------GDIERKNLKFALGSRVFIRRSNDVIPEILGKVTEEQDGEE--IL 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           +P  CP C   + +          A   C     C  Q + R+ HF SRDA +IE    +
Sbjct: 404 YPEQCPSCGFPLEQR--------GAHLFCNNKTGCKPQIVARITHFASRDAMDIETFSDK 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                +        +R PAD++TL      S   +  +  FG+    NL D+I K +   
Sbjct: 456 TAIQLYDE----LGVREPADLYTL------SFDSLLKLERFGEKKAQNLLDAIEKSKERD 505

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L  F+F+LGI + G    + LA +Y                       L+ +P VG I+A
Sbjct: 506 LASFLFALGIPNTGKSTTKMLADHYRDLNRVMAAT----------AEELVELPDVGGIVA 555

Query: 610 QAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++I  ++ +P    +++ +L               +  S    K +V TGTL  + R +A
Sbjct: 556 ESIAGYFADPFAQASIQKMLSLGVQAKAPEAPKPVSTDSYFSGKTVVLTGTLHLLTREEA 615

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQ 720
            E +  LGA V+  +S+KTD++I G+  GSKL KAQQLG+ I+ +EE+F+ LL +
Sbjct: 616 TERLEALGAKVTGSVSKKTDLLIAGEKAGSKLAKAQQLGIDILEDEEEFVRLLNE 670


>gi|261409569|ref|YP_003245810.1| NAD-dependent DNA ligase LigA [Paenibacillus sp. Y412MC10]
 gi|261286032|gb|ACX68003.1| DNA ligase, NAD-dependent [Paenibacillus sp. Y412MC10]
          Length = 670

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 210/715 (29%), Positives = 342/715 (47%), Gaps = 60/715 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  E++ ++  YY   +P++ D EYDAL  +  A+            P+ P  +
Sbjct: 4   KEKMEKLIAELNNYNYHYYTLDQPLVSDKEYDALYDQLVALEAE----TGVTLPDSPTQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ----KKDDNSIF---FTL 130
           +GGE+        H  P  SL+K  NIE LR +  R+ R       K   N +    + L
Sbjct: 60  VGGEILKGFAPHRHLAPLWSLDKAQNIEQLRTWHDRVVRLVNDYNTKNPGNPLPSPCYAL 119

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K DG  + + Y+ GK V A+ RG+G  GE + A ++ I ++P  +       IEV+GE
Sbjct: 120 ELKFDGLTLNLTYQDGKLVQASTRGNGTVGEGILAQVKTIKSVPMTIPYA-EGTIEVQGE 178

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
             ++ +     N        +P  N RNAA+G LR LNP     R LN + + +G +  I
Sbjct: 179 GIMNLSVLEQYNQTA----AEPLKNARNAAAGALRNLNPKVTAERKLNAYFYNVGYSDGI 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 EM+  +R     VN  +     F  ++    +++  RS L Y IDG V KV +F
Sbjct: 235 TFADHKEMMDFLRENRLKVNPYIFYFEQFDDVMEQLADIEKRRSELDYLIDGAVVKVTDF 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            +++ LG   + PRW +++KF  ++ +T L  +   +GRTG +TP+AR+EPV + G  + 
Sbjct: 295 RIREVLGYTDKFPRWAVAYKFEAEETTTVLQSVTWNVGRTGKITPLARVEPVELAGVTVQ 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           N TL+N          G + R      +G RV ++R+ +VIP+++  +  E+  +     
Sbjct: 355 NCTLNNI---------GDIERKNLKFALGSRVFIRRSNDVIPEILGKVTEEQDGEE--IL 403

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           +P  CP C   + +          A   C     C  Q + R+ HF SRDA +IE    +
Sbjct: 404 YPEQCPSCGFPLEQR--------GAHLFCNNKTGCKPQIVARITHFASRDAMDIETFSDK 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                +        +R PAD++TL      S   +  +  FG+    NL D+I K +   
Sbjct: 456 TAIQLYDE----LGVREPADLYTL------SFDSLLKLERFGEKKAQNLLDAIEKSKERD 505

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L  F+F+LGI + G    + LA +Y                       L+ +P VG I+A
Sbjct: 506 LASFLFALGIPNTGKSTTKMLADHYRDLNRVMAAT----------AEELVELPDVGGIVA 555

Query: 610 QAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++I  ++ +P    +++ +L               +  S    K +V TGTL  + R +A
Sbjct: 556 ESIAGYFADPFAQASIQKMLSLGVQAKAPEAPKPVSTDSYFSGKTVVLTGTLHLLTREEA 615

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQ 720
            E +  LGA V+  +S+KTD++I G+  GSKL KAQQLG+ I+ +EE+F+ LL +
Sbjct: 616 TERLEALGAKVTGSVSKKTDLLIAGEKAGSKLAKAQQLGIDILEDEEEFVRLLNE 670


>gi|330751993|emb|CBL80506.1| DNA ligase [uncultured Polaribacter sp.]
          Length = 665

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 211/705 (29%), Positives = 354/705 (50%), Gaps = 46/705 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
             +++  L ++++ H+  YY      I D ++D   +  + +    P    S   N P  
Sbjct: 3   VEEKIKELREQLNNHNYNYYVLDNATISDFDFDRTLKELEKLEKENPIFFNS---NSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG +  +   + H     SL+  ++ EDL  +  R+ +       + + FT E K DG
Sbjct: 60  RVGGTVTKNFNTIVHKNRMYSLDNSYSKEDLLDWEKRVEKVLGV---SELEFTCELKFDG 116

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I + YE G+FV A  RGDG  G++V+  I+ I +IP  +        E+RGE+ +  +
Sbjct: 117 ASINLTYENGQFVKAVTRGDGFQGDEVTNNIKTIRSIPLSIKEEFISNFEMRGEIVLPID 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
            F+ +N+E I  G + Y NPRN ASG L+  +  ++ +     +     T E   K  +E
Sbjct: 177 GFIKMNEERILNGEEVYRNPRNTASGSLKLQDSGEVAKRPLDCLLYQMVTEERKYKTHFE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+  R +GF V   +  A +   +  + N   + R+ LPY+ DG+V KV+    Q++LG
Sbjct: 237 SLENARKVGFKVPKTITLAKSIDAVFDFVNYWDAKRNDLPYETDGIVIKVNNLQQQEELG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A++PRW I++KF   Q ST L +I  Q+GRTG +TPVA L PV + G  +  A+LHN 
Sbjct: 297 YTAKAPRWAIAYKFKAAQVSTILNEITYQVGRTGAITPVANLNPVQLAGTTVKRASLHNA 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DIR  D V V++ GE+IPK++ +   +R  ++ P  + + CP 
Sbjct: 357 DQIERL-----------DIREKDTVFVEKGGEIIPKIIAVDHTKRSENSAPTMYATNCPE 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + +VR          A H C     C+ Q   R++H++SR A +I+GLG + +D   K
Sbjct: 406 CDTALVRTEG------DAKHYCPNEFGCAPQITGRIQHYISRKAMDIDGLGGETVDLLRK 459

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  AD++ L   Q         +    + S  N+   I K + I  E+ +F+
Sbjct: 460 E----GLIQNYADLYDLNVAQII------PLERMAEKSAQNMISGIEKSKEIPFEKVLFA 509

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG  +A+ LAK++ S  +               +  LI+   +GD IAQ+I++F 
Sbjct: 510 LGIRFVGETVAKKLAKHFKSIDHLMTAT----------FEELIKADEIGDRIAQSILDFS 559

Query: 617 QNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            +  NI  +  L              +N +  ++ +  V +G   ++ R++ ++ +   G
Sbjct: 560 SDLGNIQLINRLKSYGLQLEVSAAVLENQTEILQGQIFVVSGVFYQMSRNELKKAIEDNG 619

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
             VS+ +S+KT+ I+ GDN G SKL KAQ LG+ I++E+ F++ +
Sbjct: 620 GKVSSSISKKTNFIVAGDNMGPSKLTKAQDLGISIISEQDFIYKI 664


>gi|56708436|ref|YP_170332.1| DNA ligase [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670907|ref|YP_667464.1| DNA ligase [Francisella tularensis subsp. tularensis FSC198]
 gi|134301572|ref|YP_001121540.1| DNA ligase [Francisella tularensis subsp. tularensis WY96-3418]
 gi|187931418|ref|YP_001891402.1| DNA ligase, NAD-dependent [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|224457588|ref|ZP_03666061.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254875281|ref|ZP_05247991.1| DNA ligase [Francisella tularensis subsp. tularensis MA00-2987]
 gi|81597232|sp|Q5NF60|DNLJ_FRATT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123063401|sp|Q14GL3|DNLJ_FRAT1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215759|sp|A4IWW8|DNLJ_FRATW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781335|sp|B2SFT1|DNLJ_FRATM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56604928|emb|CAG46020.1| DNA ligase [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110321240|emb|CAL09403.1| DNA ligase [Francisella tularensis subsp. tularensis FSC198]
 gi|134049349|gb|ABO46420.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|187712327|gb|ACD30624.1| DNA ligase, NAD-dependent [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254841280|gb|EET19716.1| DNA ligase [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282159628|gb|ADA79019.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 678

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 254/713 (35%), Positives = 391/713 (54%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  + +  +  L   +S     Y+   KPII DS+YD L R    + +  P        
Sbjct: 14  LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N  L+++GGE+      + H     SL  ++++E+LR F  +I           I    E
Sbjct: 71  NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P    + N PE +EVRGE
Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--S 247
           + + K  FL+LN+ M     K +ANPRNAA+G +R L+      R L  + +G+G     
Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            ++ + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGLV+KV+
Sbjct: 243 FVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ  +G  AR P+W I++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG +
Sbjct: 303 NIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV  +   R  DAQ 
Sbjct: 363 VSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQM 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP+C S++      +     A +RCTGG  C AQ  ERLKHFVSR A +I+ LG
Sbjct: 412 VEMPTNCPVCDSKI------ENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++        A  I+ PADI+ L   Q T       +      S  N+ DSI K + 
Sbjct: 466 AKLIEQLV----AANLIKYPADIYKLNFEQLTG------LERMAAKSSQNVLDSITKSKE 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFIF++GI+ +G   + +LA ++ S ++F              +  LI +  +G+I
Sbjct: 516 PSLARFIFAIGIKDIGEVSSDALANHFGSLESFRDA----------KFEELIEINDIGEI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +A  IV F+ +  NI  VE  L       +  + E   +     K +V TG+ +   R +
Sbjct: 566 MANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+    LL
Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678


>gi|289644234|ref|ZP_06476323.1| DNA ligase, NAD-dependent [Frankia symbiont of Datisca glomerata]
 gi|289505957|gb|EFD26967.1| DNA ligase, NAD-dependent [Frankia symbiont of Datisca glomerata]
          Length = 713

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 218/694 (31%), Positives = 341/694 (49%), Gaps = 48/694 (6%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
            H   YY    P + D+EYD L      +   +P L     P+ P  K+ G ++     V
Sbjct: 41  EHAFRYYVLDSPTVSDAEYDQLMAELTQLETRYPGL---RTPDSPTQKVAGTISTLFTPV 97

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H    LSL+ ++   +   +  R+ R  +        +  E KIDG  + + YE G   
Sbjct: 98  EHLERLLSLDNVFTEVEFEAWAARVTREAEVDA-----WLCELKIDGLAVDLVYEDGYLA 152

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAV 208
            AA RGDG +GEDV+  IR +  +P  L   ++PE++EVRGEV+     F  LN  ++A 
Sbjct: 153 RAATRGDGRTGEDVTPNIRTLAAVPGRLRGGSVPELLEVRGEVFFPTAAFTELNATLVAA 212

Query: 209 GRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP 267
           G KP+ANPRNAA+G LR+ +P     R L+  +HGLG         Q +  Q+M  LG P
Sbjct: 213 GDKPFANPRNAAAGSLRQKDPRVTAGRPLSMIMHGLGAHRGFDVTSQSDAYQRMAELGLP 272

Query: 268 VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
           V+       +   + ++       R  + ++IDG+V KVD F LQ++LG  ++SPRW ++
Sbjct: 273 VSRHHEVLASVAEVEAFVRRWGEHRHDVEHEIDGVVVKVDAFGLQRRLGATSKSPRWAVA 332

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
           +K+  ++ +TRLL I++ +GRTG +TP  RLEPV + G+ +  ATLHN D ++       
Sbjct: 333 YKYPPEEVTTRLLGIEVNVGRTGRVTPFGRLEPVRVAGSTVALATLHNADQVER------ 386

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447
                + + +GD V++++AG+VIP++V  +V+ R    + F  P+ CP C + +VR    
Sbjct: 387 -----KGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGSERAFVMPTHCPECGTELVRPEGE 441

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                    RC   ++C AQ  E L HF SR A +I+G G +      +    A  +R  
Sbjct: 442 ------VDVRCPNTVSCPAQLRESLFHFASRGALDIDGFGYETATALLE----AGRVRDV 491

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
            D+F L             + GF    +  +   +   R   L R +  L IRHVG   A
Sbjct: 492 GDVFHLTAE------SFAELRGFAKKKIDQILRGVEAARQQPLWRLLVGLSIRHVGPSAA 545

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           R+LA+   S    A               +L  V  VG  IA ++V+++ +PR+   +E 
Sbjct: 546 RALAREMRSVDAIAAA----------STETLAAVDGVGPTIAASVVDWFADPRHQDILER 595

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           +    +        +    +    +V TGTL    R  A E V   G  V+A +S+KT  
Sbjct: 596 IRSGGARFADAGADDGPGPLTGVTVVITGTLAGWSRDSATEAVQARGGKVTASVSKKTAF 655

Query: 688 IIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++VG +PG SK +KA+   + I++E  F  LL+Q
Sbjct: 656 VVVGADPGASKYDKARAWKLSILDEAGFAVLLEQ 689


>gi|118497929|ref|YP_898979.1| DNA ligase [Francisella tularensis subsp. novicida U112]
 gi|194323151|ref|ZP_03056935.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. novicida
           FTE]
 gi|166215758|sp|A0Q7L0|DNLJ_FRATN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118423835|gb|ABK90225.1| DNA ligase [Francisella novicida U112]
 gi|194322515|gb|EDX19995.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. novicida
           FTE]
          Length = 678

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 255/713 (35%), Positives = 390/713 (54%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  + +  +  L   +S     Y+   KPII DS+YD L R    + +  P        
Sbjct: 14  LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N  L+++GGE+      + H     SL  ++++E+LR F  +I           I    E
Sbjct: 71  NSVLDRVGGEVLAEFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P    + N PE +EVRGE
Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--S 247
           + + K  FL+LN+ M     K +ANPRNAA+G +R L+      R L  + +G+G     
Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            +  + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGLV+KV+
Sbjct: 243 FVHPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ  +G  AR P+W +++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG +
Sbjct: 303 NIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV  +   R  DAQ 
Sbjct: 363 VSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQM 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP+C S +      +     A +RCTGG  C AQ  ERLKHFVSR A +I+ LG
Sbjct: 412 VEMPTNCPVCDSAI------ENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++        A  I+ PADI+ L   Q T       +   G  S  N+ DSI K + 
Sbjct: 466 AKLIEQLV----AANLIKYPADIYKLNFDQLTG------LERMGAKSSQNVLDSIKKSKT 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFIF++GI+ +G   +  LA ++ S ++F              +  LI +  +G+I
Sbjct: 516 PSLARFIFAIGIKDIGEVSSDVLANHFGSLESFRDA----------KFEELIEINDIGEI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +A  IV F+ +  NI  VE LL       +  + E   +     K +V TG+ +   R +
Sbjct: 566 MANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+    LL
Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678


>gi|254373281|ref|ZP_04988769.1| hypothetical protein FTCG_00864 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151571007|gb|EDN36661.1| hypothetical protein FTCG_00864 [Francisella novicida GA99-3549]
          Length = 678

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 255/713 (35%), Positives = 391/713 (54%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  + +  +  L   +S     Y+   KPII DS+YD L R    + +  P        
Sbjct: 14  LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N  L+++GGE+      + H     SL  ++++E+LR F  +I           I    E
Sbjct: 71  NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P    + N PE +EVRGE
Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--S 247
           + + K  FL+LN+ M     K +ANPRNAA+G +R L+      R L  + +G+G     
Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            +  + Q+E++  ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGLV+KV+
Sbjct: 243 FVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ  +G  AR P+W +++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG +
Sbjct: 303 NIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN + IK            +DIRV DRV+V+RAG+VIP+VV  +   R PDAQ 
Sbjct: 363 VSNATLHNINEIKR-----------KDIRVSDRVIVRRAGDVIPEVVKSLPQYRKPDAQV 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP+C S +      +     A +RCTGG  C AQ  ERLKHFVSR A +I+ LG
Sbjct: 412 VEMPTSCPVCDSAI------ENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++        A  I+ PADI+ L   Q T       +   G  S  N+ DSI K + 
Sbjct: 466 AKLIEQLV----AANLIKYPADIYKLNFDQLTG------LERMGAKSSQNVLDSITKSKE 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFIF++GI+ VG   + +LA ++ S ++F +            +  LI +  +G+I
Sbjct: 516 PSLARFIFAIGIKDVGEVSSEALANHFGSLESFREA----------KFEQLIEINDIGEI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +A  IV F+ +  NI  VE LL       +  + E   +     K +V TG+ +   R +
Sbjct: 566 MANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+    LL
Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678


>gi|332184463|gb|AEE26717.1| DNA ligase [Francisella cf. novicida 3523]
          Length = 678

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 260/713 (36%), Positives = 393/713 (55%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  + +  +  L   +S     Y+   KPII DS+YD L R    +    P    +   
Sbjct: 14  LAKPELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVDDNPQFKPT--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N  L+++GGE+      + H     SL  ++ IE+LR F  +I           I    E
Sbjct: 71  NSVLDRVGGEVLAGFETIKHKKKMTSLVNVFTIEELRDFYDKIE--------YEIELECE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P    ++N PE +EVRGE
Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTINPPEELEVRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--S 247
           + + K  FL+LN+ M     K +ANPRNAA+G +R L+      R L  F +G+G     
Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLFSYGIGYFSKD 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            +  + Q+E++Q +R  GF +++ +  A +F  +  Y+ +M   R+ L YDIDGLV+KV+
Sbjct: 243 FVHPETQFELMQLLRSFGFTISDNMFLAKSFSEVEEYHRKMSHQRADLAYDIDGLVFKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ  +G  AR P+W +++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG +
Sbjct: 303 NIKLQDTIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVM 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN + IK            +DIRV DRV+V+RAG+VIP+VV  +   R PDAQ 
Sbjct: 363 VSNATLHNINEIKR-----------KDIRVSDRVIVRRAGDVIPEVVKSLPQYRKPDAQI 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP+C S +    +       A +RCTGG  C AQ  ERLKHFVSR A +I+ LG
Sbjct: 412 VEMPKNCPVCDSTIENIND------QAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++        A  I+ PADI+ L   Q T       +   G  S  N+ DSI K + 
Sbjct: 466 AKLIEQLV----AADLIKYPADIYKLNFEQLTG------LKRMGAKSSQNVLDSITKSKE 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFIF++GI+ +G   + +LA ++ S ++F +            +  LI +  +G+I
Sbjct: 516 PSLARFIFAIGIKDIGEVSSEALANHFGSLESFREA----------KFEQLIEINDIGEI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +A  IV F+Q+  NI  V+ LL       +  + E+  +    NK +V TGT +   R +
Sbjct: 566 MANNIVSFWQDSLNIQIVDELLANAINIQNPEKIEQAHNESFTNKTVVITGTFENYNRTE 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV ++ E+    LL
Sbjct: 626 LTQLLKSMGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVTVILEQDLQNLL 678


>gi|254368889|ref|ZP_04984902.1| DNA ligase [Francisella tularensis subsp. holarctica FSC022]
 gi|157121810|gb|EDO65980.1| DNA ligase [Francisella tularensis subsp. holarctica FSC022]
          Length = 678

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 254/713 (35%), Positives = 391/713 (54%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  + +  +  L   +S     Y+   KPII DS+YD L R    + +  P        
Sbjct: 14  LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N  L+++GGE+      + H     SL  ++++E+LR F  +I           I    E
Sbjct: 71  NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P    + N PE +EVRGE
Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--S 247
           + + K  FL+LN+ M     K +ANPRNAA+G +R L+      R L  + +G+G     
Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            ++ + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGLV+KV+
Sbjct: 243 FVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ  +G  AR P+W I++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG +
Sbjct: 303 NIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV  +   R  DAQ 
Sbjct: 363 VSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQI 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP+C S++      +     A +RCTGG  C AQ  ERLKHFVSR A +I+ LG
Sbjct: 412 VEMPTNCPVCDSKI------ENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++        A  I+ PADI+ L   Q T       +      S  N+ DSI K + 
Sbjct: 466 AKLIEQLV----AANLIKYPADIYKLNFEQLTG------LERMAAKSSQNVLDSITKSKE 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFIF++GI+ +G   + +LA ++ S ++F              +  LI +  +G+I
Sbjct: 516 PSLARFIFAIGIKDIGEVSSDALANHFGSLESFRDA----------KFEELIEINDIGEI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +A  IV F+ +  NI  VE  L       +  + E   +     K +V TG+ +   R +
Sbjct: 566 MANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+    LL
Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678


>gi|212703192|ref|ZP_03311320.1| hypothetical protein DESPIG_01234 [Desulfovibrio piger ATCC 29098]
 gi|212673458|gb|EEB33941.1| hypothetical protein DESPIG_01234 [Desulfovibrio piger ATCC 29098]
          Length = 729

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 247/728 (33%), Positives = 384/728 (52%), Gaps = 60/728 (8%)

Query: 8   PIEALSI-----EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           P + LS+     ++ ++ ++ L   + +H+  Y+   KP+I D +YDAL R   A+   +
Sbjct: 43  PADPLSLPEPPRDRPQERMAWLTTILEHHNYLYHTLDKPVISDDQYDALFRELKALEEDY 102

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P       P+ P  ++GG +   L K  H      L+ +++ E+ ++F+ R+ R   +  
Sbjct: 103 PQW---RSPHSPTLRVGGGLLGGLPKQRHRQRMYGLDNVFSAEEWQEFVARMQRALPEA- 158

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--N 180
              + F  +PK+DG  + I YE G    A  RGDG  GE V+  +R I T+P  L     
Sbjct: 159 --PLAFWCDPKLDGLALEIIYEDGVLQQALTRGDGEEGEVVTEAVRTIRTVPLRLRGTGP 216

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFF 239
            PE +EVRGEV I K DF A+N+   ++G+K  ANPRNAA+G LR+L+  +  +    F 
Sbjct: 217 FPERLEVRGEVVIYKKDFAAINERRESLGQKLLANPRNAAAGALRQLDVANTQQMPLRFL 276

Query: 240 VHGLG---KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
            + LG            Q+E+  ++R  GF      +       + +Y   ++  R+  P
Sbjct: 277 AYSLGEARWGQAEPCHFQHELAARLRDYGFLTPPDGKLCADPAAVEAYVESVRQGRADFP 336

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
            +IDG V K D+   Q+ LG  AR+PR+ I+ KF   Q  TRL  I+IQ+GRTG+LTPVA
Sbjct: 337 MEIDGAVAKQDDLEAQEALGFTARAPRFAIAFKFPAMQVHTRLTGIEIQVGRTGVLTPVA 396

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
           +LEPV +GG ++T ATLHNED I             +D+RVGD V+V+RAG+VIP+VV  
Sbjct: 397 QLEPVAVGGVMVTRATLHNEDEI-----------LAKDVRVGDTVIVQRAGDVIPEVVGP 445

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           ++ ER   A+PF FP  CP+C     R+         AA RC G ++C A +L  + HFV
Sbjct: 446 VLEERPSGARPFEFPHICPVCGEPAHREPGE------AAWRC-GNISCPAVRLRSICHFV 498

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           S+   +++G+G++ ++    S      +  P  +F L      +   +      GDV   
Sbjct: 499 SKAGLDVQGVGQKWIEQLVSS----GHVTSPKQLFRL------TVQDLLPFDRMGDVLAR 548

Query: 537 NLYDSINKRRNISL-ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            + D+ +  R+ +   R I +LGIRHVG + AR LA ++      A            D 
Sbjct: 549 KIVDAFDDARHNATLARLISALGIRHVGEQTARMLAAHFYDMDALAAA----------DT 598

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKL 652
             L+ +P VG  +A +I  F+++P N   +  L +     +   E   ++    ++ K +
Sbjct: 599 QRLLELPDVGPEVASSIRSFFESPANQHMLAGLREAGLWPVAAAEPAEAAGEGPLQGKNI 658

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           +FTGTL  + R KA++     GAVV   +S+K DI++VG+NPGSKLEKAQ LG+ +++E 
Sbjct: 659 LFTGTLS-MARGKAKQLAEAAGAVVLGSVSKKLDILVVGENPGSKLEKAQSLGITVLDEA 717

Query: 713 QFLFLLQQ 720
            FL LL  
Sbjct: 718 AFLDLLAD 725


>gi|328956034|ref|YP_004373367.1| DNA ligase, NAD-dependent [Coriobacterium glomerans PW2]
 gi|328456358|gb|AEB07552.1| DNA ligase, NAD-dependent [Coriobacterium glomerans PW2]
          Length = 752

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 235/753 (31%), Positives = 362/753 (48%), Gaps = 79/753 (10%)

Query: 8   PIEALSIEQA---RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           P   ++   A    +    L + + YH   YY    P I D+++D L R    I    PD
Sbjct: 32  PAGHMTSTAAVPPAERAEELRRLLDYHAYRYYALDAPEISDAQFDRLLRELQQIEVEHPD 91

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L     P+    ++GG ++     +TH     S++   ++++L  ++ R+          
Sbjct: 92  LI---TPDSYTQRVGGFVSGQFAPITHMARMYSIDDAMDLDELDAWLDRVESALGA---G 145

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-------- 176
           S  +T E KIDG  + + Y  GKFV AA RGDG+ GEDVS  IR I  +P          
Sbjct: 146 SAVYTCELKIDGLGVALTYRSGKFVRAATRGDGYVGEDVSRNIRTIADVPMRLSTEAVER 205

Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRY 235
           +  +  E IEVRGEVY+ K  F  LN    A GR P+ANPRNAA+G LR+ +P     R 
Sbjct: 206 MGDDASEAIEVRGEVYMPKGSFARLNATADAEGRPPFANPRNAAAGSLRQKDPAVTARRD 265

Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           L+ F++ L  T+ +    Q E L  +R  GF VN  V +  +   +  +  +  + R  L
Sbjct: 266 LSTFMYALADTAPVHVTSQLEFLDWLREAGFHVNPNVARCASPAQVHDFCADALAHRGGL 325

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            YDIDG+V KVD F LQ++LG  AR+PRW I+ KF  ++  T L +I IQ+GRTG+LTPV
Sbjct: 326 DYDIDGVVVKVDSFELQERLGFTARAPRWAIAFKFPPEERRTVLREIRIQVGRTGVLTPV 385

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A+ +PV++ G+ I  ATLHN D I+            +D+RVGD ++V +AG+VIP+VV 
Sbjct: 386 AQFDPVSVAGSTIARATLHNIDEIER-----------KDVRVGDTIIVHKAGDVIPEVVG 434

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
            +++ R   A+P+  P  CP C + VVR+      +          L C AQ  ERL H+
Sbjct: 435 PVLDLRADGARPYQMPDRCPACGNPVVREPGQVAIR-------CVSLDCPAQLHERLLHW 487

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS- 534
           VSR   +++G+G + +D        A  +R  AD +TL   Q  +               
Sbjct: 488 VSRGCMDVDGVGAELVDKLVD----AGLVRDVADFYTLTSEQIAALDTGRVYQKTVAKKG 543

Query: 535 -------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
                           + D +++ ++  L R +F+LGIRHVG  +   LA+++ S +   
Sbjct: 544 VRAGDPILVGKTVADKIADELDRSKSRPLGRVLFALGIRHVGKSVGELLARHFGSIEALI 603

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP------S 635
           +               +  +  +G  IA +   F+  P N+  +  L +           
Sbjct: 604 EANE----------EEIAGIDGIGPKIASSTKMFFSVPENLQVLSRLREAGVGTQEGSGE 653

Query: 636 IGRHEKNVSS---------EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           +   E   S           +E    V TG+L+   R +A   +  LGA V+  +S++T 
Sbjct: 654 VEAREAEESGVSVELARQRPLEGLTFVLTGSLEHRTRDQAAAALVALGARVAGSVSKRTS 713

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +I G   GSKL KA  LG+ +++E +   +L 
Sbjct: 714 FVIAGPGAGSKLTKAASLGIAVLDERELERILA 746


>gi|77409440|ref|ZP_00786135.1| DNA ligase, NAD-dependent [Streptococcus agalactiae COH1]
 gi|77171952|gb|EAO75126.1| DNA ligase, NAD-dependent [Streptococcus agalactiae COH1]
          Length = 643

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 218/686 (31%), Positives = 354/686 (51%), Gaps = 51/686 (7%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92
             YY    P + DS+YD L R    +    P+      PN P +++GG +     K  H 
Sbjct: 8   KEYYTQDNPTVSDSQYDQLYRELVELEEQHPENIL---PNSPTHRVGGLVLEGFEKYQHE 64

Query: 93  IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152
            P  SL+  ++ E+L  F  R+       +  +  +  E KIDG  +++ Y  G     A
Sbjct: 65  YPLYSLQDAFSKEELIAFDKRVK-----AEFPTASYMAELKIDGLSVSLTYVNGILQVGA 119

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
            RGDG+ GE+++  ++ +  IP  L L+    I VRGE Y+ K  F A+N E  A G + 
Sbjct: 120 TRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKESFEAINIEKRANGEQE 177

Query: 213 YANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           +ANPRNAA+G LR+LN   +            + S    + Q ++L+++   GF VN+  
Sbjct: 178 FANPRNAAAGTLRQLNTGIV-AKRKLATFLYQEASPTQKETQDDVLKELESYGFSVNHHR 236

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
             +++   I  +   ++  R +LPYDIDG+V KV+  ++Q++LG   ++PRW I++KF  
Sbjct: 237 LISSSMEKIWDFIQTIEKDRISLPYDIDGIVIKVNSLAMQEELGFTVKAPRWAIAYKFPA 296

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
           ++    +L +D  +GRTG++TP A L PV + G  ++ ATLHN DYI             
Sbjct: 297 EEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AE 345

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
           +DIR+GD V+V +AG++IP V+++++++R+        P  CP C S +V   +      
Sbjct: 346 KDIRIGDTVVVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSCGSELVHFEDE----- 399

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
             A RC   L C  Q  ERL HF SRDA NI G G   ++  F     A  I   ADI+ 
Sbjct: 400 -VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD----AHLIADVADIYR 453

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L      +      + G  + S T +Y +I   +  S E+ +F LGIRHVG++ +R L +
Sbjct: 454 LSIEDLLT------LDGIKEKSATKIYHAIQSSKENSAEKLLFGLGIRHVGSKASRLLLE 507

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE- 631
            + + +  +Q              S+  +  +G +IA+++  F++       +E L    
Sbjct: 508 EFGNLRQLSQASQ----------ESIASIDGLGGVIAKSLHTFFEKEEVDKLLEELTSYN 557

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           V+ +      +  +++    +V TG L+K+ R++A+E +  LGA V+  +S+KTD+I+ G
Sbjct: 558 VNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAKVTGSVSKKTDLIVAG 617

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFL 717
            + GSKL KAQ LG+ I +E+  L L
Sbjct: 618 SDAGSKLTKAQDLGITIQDEDWLLNL 643


>gi|254670337|emb|CBA05747.1| DNA ligase [Neisseria meningitidis alpha153]
          Length = 841

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 251/838 (29%), Positives = 382/838 (45%), Gaps = 159/838 (18%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D     
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  I+ +  IP  L     PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303
                 A+   + L   + LGF + NG          V  + E    +    PY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYERMQQKRPKLPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 QETAVAVSDGIGHRQDDLFAEAPAANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DI 510
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +       +   DI
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLYRLDI 542

Query: 511 FTLQRRQQTSTTKIENILGFG----------------DVSVTNLYDSINKRRNISLERFI 554
            TLQ+ ++T+   +                            N+   I   +   L RF+
Sbjct: 543 PTLQKMKETTDKTVAESEQMPSEGSSVGASGKHKKPPTKWAENILAGIESGKTPELARFL 602

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD-------------------- 594
           F+LGIRHVG   A++LA+ + + +   +    ++A   D                     
Sbjct: 603 FALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQAM 662

Query: 595 WLSLIR--------------------------VPL--VGDIIAQAIVE------------ 614
              L+                           +P   + +  AQA+ E            
Sbjct: 663 IDELLAAGIAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEGLQTD 722

Query: 615 ---------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGTLQK 660
                    +   P+N   +E L    +      E    S      +  K  V TGTL  
Sbjct: 723 KALPTDWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINEAVAGKTFVLTGTLPT 782

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L LL
Sbjct: 783 LKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840


>gi|322382981|ref|ZP_08056811.1| NAD-dependent DNA ligase LigA-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153004|gb|EFX45464.1| NAD-dependent DNA ligase LigA-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 673

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 205/713 (28%), Positives = 338/713 (47%), Gaps = 62/713 (8%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L +EI+ H+  YY   +P I D EYDAL  R   +       + +  PN P  ++GG
Sbjct: 8   MKILIEEINKHNYHYYTLDEPTITDQEYDALYDRLLKLEKE----SGTVLPNSPTLRVGG 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-------NSIFFTLEPK 133
           ++        H     SL+K  +IE L+ +  R+ +     +            F +E K
Sbjct: 64  DILKGFEPHRHRSRLWSLDKAQSIEVLKNWHNRVQKLVNDYNSKNPSTPLPEPSFAVELK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  I + Y++G  V A+ RG+G  GE + A ++ I ++P  +      +IEV+GE  +
Sbjct: 124 FDGLTINLTYDQGNLVQASTRGNGVVGEGILAQVKTIKSVPLEIPYK-EGLIEVQGEGMM 182

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
             +     N        +P  N RNAA+G LR LNP     R L  F + +G +      
Sbjct: 183 LLSVLDQYNQTA----AEPLKNARNAAAGALRNLNPKVTAERRLTAFFYNVGFSDRKQFM 238

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              EM+  ++   F VN  V+  NT   +     +++  R    + IDG V KV +   +
Sbjct: 239 NHQEMIAFLKENHFKVNPYVKYFNTIDEVFEEMKKLEQERHDFDFLIDGAVIKVTDIRTR 298

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG   + PRW I++KF  ++ +T L  +  ++GRTG +TPVA++EPV + G  + N T
Sbjct: 299 EVLGYTEKFPRWAIAYKFEAEEVTTVLEGVSWEVGRTGKITPVAKVEPVELAGVTVQNCT 358

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L+N   I+  +             +G  V ++R+ +VIP+++  +  E   +     +P 
Sbjct: 359 LNNIGDIERKNLKHA---------LGSLVYIRRSNDVIPEILGKVTEEIDGEE--IKYPE 407

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + + +          A   C   L C  Q + R+ HF SRDA +IE       +
Sbjct: 408 HCPACGTELEQR--------GAHLFCPNRLGCKPQLIGRITHFASRDAMDIETFSVMTAE 459

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++  D    +R PAD++ L             +  FG+    NL D+I K +   L  
Sbjct: 460 QLYQQLD----VRDPADLYDLTYDDII------QLPRFGEKKANNLLDAIEKSKERDLSS 509

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+F+LGI + G    + LA+++ S       +             LI +P VG I+A +I
Sbjct: 510 FLFALGIPNTGKTTTKVLAEHFRSLDKVMDAV----------VEELIALPDVGGIVADSI 559

Query: 613 VEFYQNPRNICAVEALLKEVSP-----SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
             F+++P  I ++  + K           G+ E +       K +V TGTL  + R +A 
Sbjct: 560 YTFFRDPIMIESIRRMKKAGVQAQMEAEEGKAEIDPGHPFYGKTIVLTGTLSSMSRDEAA 619

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN-EEQFLFLLQ 719
           + +  LGA V+  +S+KTDI+I G+N GSKL KA+QLG+++++ E++ L LL 
Sbjct: 620 KKLESLGAKVTGSVSKKTDIVIAGENAGSKLAKAEQLGIRVIDNEDELLHLLD 672


>gi|332678645|gb|AEE87774.1| DNA ligase [Francisella cf. novicida Fx1]
          Length = 678

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 254/713 (35%), Positives = 388/713 (54%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  + +  +  L   +S     Y+   KPII DS+YD L R    + +  P        
Sbjct: 14  LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N  L+++GGE+      + H     SL  ++++E+LR F  +I           I    E
Sbjct: 71  NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYGKIE--------YDIELECE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P    + N PE +EVRGE
Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--S 247
           + + K  FL+LN+ M     K +ANPRNAA+G +R L+      R L  + +G+G     
Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            +  + Q+E++  ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGLV+KV+
Sbjct: 243 FVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ  +G  AR P+W +++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG +
Sbjct: 303 NIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN + IK            +DIRV DRV+V+RAG+VIP+VV  +   R PDAQ 
Sbjct: 363 VSNATLHNINEIKR-----------KDIRVSDRVIVRRAGDVIPEVVKSLPQYRKPDAQV 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP+C S +      +     A +RCTGG  C AQ  ERLKHFVSR A +I+ LG
Sbjct: 412 VEMPTSCPVCDSAI------ENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++        A  I+ PADI+ L   Q T       +   G  S  N+ DSI K + 
Sbjct: 466 AKLIEQLV----AANLIKYPADIYKLNFDQLTG------LERMGAKSSQNVLDSIKKSKT 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFIF++GI+ +G   +  LA ++ S ++F              +  LI +  +G+I
Sbjct: 516 PSLARFIFAIGIKDIGEVSSDVLANHFGSLESFRDA----------KFEELIEINDIGEI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +A  IV F+ +  NI  VE LL       +  + E   +     K +V TG+ +   R +
Sbjct: 566 MANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +  +GA V++ +S+KTD++I G+N GSKL KAQ LGV+++ EE    LL
Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGENAGSKLTKAQDLGVEVIFEEDLQNLL 678


>gi|256832938|ref|YP_003161665.1| DNA ligase, NAD-dependent [Jonesia denitrificans DSM 20603]
 gi|256686469|gb|ACV09362.1| DNA ligase, NAD-dependent [Jonesia denitrificans DSM 20603]
          Length = 798

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 213/758 (28%), Positives = 358/758 (47%), Gaps = 89/758 (11%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +++   L + I  +   YY   +  + D++YDAL     A+               P  +
Sbjct: 54  QEQWERLARLIQRYQFEYYIQGESSVPDADYDALLAELVAVEEQ----LGGAPQGSPTQR 109

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG  +    +V H  P LSL+  +++E+L+ +  R++    +    ++ +  E KIDG 
Sbjct: 110 VGGTFSTEFEEVDHRQPMLSLDNAFSLEELQAWADRVH---GELSGGAVSYLCEVKIDGL 166

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYIS 194
            +++ YE+G+ V A  RGDG +GEDV+  ++ I +IP+ L       P+++E+RGEV++ 
Sbjct: 167 AVSLTYERGELVRALTRGDGQTGEDVTLNVQTIRSIPQRLGGDPAFHPQVVEIRGEVFMK 226

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI---- 249
             DF  LND     G K +ANPRNAA+G LR+ +P     R L+ + HG+G         
Sbjct: 227 VADFADLNDSQARQGGKTFANPRNAAAGSLRQKDPRVTAQRRLSMYAHGIGALEWDGQSP 286

Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q ++    +  G PV++     +    +       +  R ++ +++DG V KVDE
Sbjct: 287 VDLARQSDVYALYQQWGIPVSSHNSVEHDLDAVTRKIEYYRENRHSIEHELDGFVIKVDE 346

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + QKQLG  +R+PRW I+ K+  ++ +TRLLDI + +GRTG +TP   +EPV + G+ +
Sbjct: 347 VAAQKQLGSTSRAPRWAIAFKYPPEEVTTRLLDIQVNVGRTGRVTPFGMMEPVLVAGSTV 406

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATLHN   ++            +D+R GD V+V++AG+VIP+++  + + R      +
Sbjct: 407 SMATLHNFHEVRR-----------KDVRPGDTVIVRKAGDVIPEILGAVESLRPDGLPQW 455

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C + +      +  +     RC    +C +Q  ER+    SR AF+IE LG 
Sbjct: 456 EPPTHCPSCGTEIR-----EAKEGDKDLRCPNAQSCPSQLRERVFALASRGAFDIEALGW 510

Query: 489 QQLDFFFKSE--------------------------------DPAFSIRIPADIFTLQRR 516
           +        E                                + +   R   D+   + R
Sbjct: 511 ESAVALCDPESSRPVGPDAPQLDGPPLTPVLTSEAHIFDLADENSSLTRSLKDVVVWRER 570

Query: 517 QQTSTTKIENILGFGDV-----------SVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
           +  S T+ E +  F              +   L++ + K ++  L R + +L IRHVG  
Sbjct: 571 KLKSGTRWELVPYFYTRATASKSSVPTATTVKLFEEVQKAKSQPLWRVLVALSIRHVGPT 630

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ----NPRN 621
            AR+LA  + S                     L  V  VG  IA+++VE+++    N   
Sbjct: 631 AARALATEFGSMDRIRAA----------SVSELAAVDGVGSTIAESVVEWFREVDGNQWR 680

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
              V A  K         +++V   +E   +V TG L+   R   +E +   G   S  +
Sbjct: 681 PAIVAAWAKAGVSMEDIPDESVQRTLEGITVVVTGGLENFTRDGVKEAIVARGGKASGSV 740

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           S+KTD ++VG N GSK  KA++LG++I+NEE+F  LL 
Sbjct: 741 SKKTDFVVVGANAGSKETKARELGLRILNEEEFTRLLA 778


>gi|325137931|gb|EGC60506.1| DNA ligase, NAD-dependent [Neisseria meningitidis ES14902]
          Length = 841

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 249/842 (29%), Positives = 379/842 (45%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D     
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  I+ +  IP  L     PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303
                 A+   + L   + LGF + NG          V  + E    +    PY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550
            L         +  +                               N+   I   +   L
Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---------------- 594
            RF+F+LGIRHVG   A++LA+ + + +   +    ++A   D                 
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658

Query: 595 ----WLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614
                  L+                           +P   + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQTDKALPTDWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|297156986|gb|ADI06698.1| NAD-dependent DNA ligase LigA [Streptomyces bingchenggensis BCW-1]
          Length = 728

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 221/737 (29%), Positives = 350/737 (47%), Gaps = 62/737 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +AR + + L +++  H   YY    PI+ D+E+D   R    +     +      P+ 
Sbjct: 10  PAEARDKHAILAEQVEEHRFRYYVKDAPIVSDAEFD---RLLRELEALEEEYTELRTPDS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+ G       +V H    LSL+  ++ E+L  +  RI R      D+   F  E K
Sbjct: 67  PTQKVAGAYETEFTEVEHRERMLSLDNAFDGEELAAWAERIVRELG---DSGYHFLCELK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  + + YE+G+   AA RGDG +GED++  +R I  IP  L  +  PE++EVRGEVY
Sbjct: 124 VDGLAVNLTYERGRLTRAATRGDGRTGEDITPNVRTISVIPDRLKGDRIPELVEVRGEVY 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
                F  LN  ++  G+ P+ANPRNAA+G LR+ +P    +R L   VHG+G       
Sbjct: 184 FPGARFEELNARLVEAGKPPFANPRNAAAGSLRQKDPKVTASRPLRMVVHGIGAREGFDI 243

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS--IRSTLPYDIDGLVYKVDEF 309
             Q +  + +   G P     +  ++   +  Y         R +L ++IDG+V K+DE 
Sbjct: 244 DRQSQAYELLHEWGLPTAAHFKVVDSLDAVSEYIAYYGDPKRRHSLEHEIDGVVVKLDEI 303

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQ +LG  +R+PRW I+ KF  ++ +T+L+DI + +GRTG +TP A +EPV + G+ + 
Sbjct: 304 PLQGRLGSTSRAPRWAIAWKFPPEEVNTKLVDIRVGVGRTGRVTPFAVVEPVTVAGSEVE 363

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN+D +K            + + +GD V++++AG+VIP++V  +V+ R    + F 
Sbjct: 364 FATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGSEREFV 412

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +         +     RC     C AQ  ER+ +   R   +IE  G  
Sbjct: 413 MPAECPECGTPLQPM-----KEGDVDLRCPNARYCRAQIRERVYYLAGRKCLDIENFGYV 467

Query: 490 QLDFFFKSEDPA-FSIRIPADIFTLQRRQQTSTTKI------------------------ 524
                 +  DPA   ++   D+F L+  Q    T                          
Sbjct: 468 AAGALTQPLDPAEPPLKDEGDLFDLKVEQLLPITSYVLDPDSGLPKRDPKTGEEKVVTFF 527

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
            N  G    +   + D+I   +   L R I  L IRHVG   A +LA+ + S    A+  
Sbjct: 528 ANQKGEPKKNTLAMLDNIEAAKQRPLARIITGLSIRHVGPVAAAALAREFRSLDRIAEAS 587

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              +A              VG  IA ++ +++    +   VE   +          ++  
Sbjct: 588 EEELAAVE----------GVGPTIAASVKQWFAEDWHREIVEKWRRAGVLLEEEAPEDEG 637

Query: 645 -SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              +E   +V TGTLQ   R  A+E +   GA V+  +S+KTD ++VGDNPGSK +KA Q
Sbjct: 638 PRPLEGLTVVVTGTLQTHTRDGAKEALQNRGAKVAGSVSKKTDFVVVGDNPGSKYDKAMQ 697

Query: 704 LGVKIMNEEQFLFLLQQ 720
           L V +++E+ F  LL+Q
Sbjct: 698 LKVPVLDEDGFTVLLEQ 714


>gi|62185205|ref|YP_219990.1| NAD-dependent DNA ligase LigA [Chlamydophila abortus S26/3]
 gi|81312632|sp|Q5L5Q2|DNLJ_CHLAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|62148272|emb|CAH64037.1| putative DNA ligase [Chlamydophila abortus S26/3]
          Length = 660

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 241/701 (34%), Positives = 381/701 (54%), Gaps = 48/701 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R++  SL ++I   D  YY    P I D +YD   R+  +I    P+         P  +
Sbjct: 7   REQYISLCKDIEEDDYRYYVLHNPTISDYDYDMKMRQLLSIEAQHPEWKVLW---SPSMR 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   + S   V H+ P LS+   + +E+L +F +RI +        +  +TLE KIDG 
Sbjct: 64  LGDRTSGSFPIVAHAHPMLSIANAYTLEELYEFFSRIEKTLG----YTPKYTLEIKIDGI 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + IRYE+   V A  RG+G  GED++A IR I ++P  LS   PE +EVRGEV+ S+  
Sbjct: 120 AVAIRYEQRVLVQALSRGNGRKGEDITANIRTIRSLPLRLSKEAPEFLEVRGEVFFSRAT 179

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N       +  +ANPRNAA G L+ L+  +     N  +   G  +E   +  YE 
Sbjct: 180 FCQINAAQRQAEKPEFANPRNAAGGTLKLLSAKEA-AQRNLEISIYGSLAEENKRSHYEN 238

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L   +  GFPV    RQ  T   +V+  +E++  R+ LP +IDG+V KVD+   QK LG 
Sbjct: 239 LLLCKEWGFPVFGQPRQCQTIEKVVASLHEIEVARAQLPMEIDGVVIKVDDIEDQKVLGM 298

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+  RW +++K+A ++A T L DI +Q+GRTG+LTPVA+L PV + G+ ++ A+L+NED
Sbjct: 299 TAKHYRWALAYKYAPERAETILEDIIVQVGRTGVLTPVAKLRPVVLSGSRVSRASLYNED 358

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +DIR+GD V V++ GE+IP+VV + + +R    QP+  P +CP+C
Sbjct: 359 EIER-----------KDIRIGDTVYVEKGGEIIPQVVGVCLEKRPEGTQPWVMPEYCPVC 407

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
             +V R+ +        + RCT  L CSA  +E+++ F  RDA +I+ LG++ +   F  
Sbjct: 408 HQKVTRESDK------VSVRCTNSL-CSAGVIEKIRFFCGRDALDIDHLGEKVVTKLFD- 459

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I    DIF +             + GF D S+ N+  SI K +++ L+RFI +L
Sbjct: 460 ---LGCIHRRCDIFQITEEDL------RQVPGFKDKSIRNVLKSIEKAKSVPLDRFITAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI +VG   A +LA+++LS ++                  L  +  +GD +A++IV ++ 
Sbjct: 511 GIPYVGIGGANALAQHFLSLESVMAA----------SLDDLKAIEGIGDKVAESIVAYFH 560

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
            P ++  ++ +L      +  H    SS    K  V TGTL+K+ R +A+ Y+   G  V
Sbjct: 561 QPEHLEEIQKMLSLGVHILPCH--RASSSCLGKAFVITGTLEKLTRSEAETYIRNCGGKV 618

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + +S+ TD ++VG +PGSKL++AQ+LGV I++E++ L LL
Sbjct: 619 GSSVSKNTDYLVVGQDPGSKLKRAQELGVPILSEDELLKLL 659


>gi|323342976|ref|ZP_08083207.1| NAD-dependent DNA ligase LigA [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463040|gb|EFY08235.1| NAD-dependent DNA ligase LigA [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 659

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 250/710 (35%), Positives = 380/710 (53%), Gaps = 68/710 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ + +L +++  ++  Y+   +P I D EYD L R  + +    P+     D N P  K
Sbjct: 3   KERILALRKKLHQYNYEYHVMDQPTIADVEYDQLLRELNELEVKHPEFF---DINSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG ++    KVTH  P  SL   ++  DL  F  R+          ++ + +E KIDG 
Sbjct: 60  VGGVVSERFSKVTHRFPMFSLGNAFSRSDLEVFDERLR-----AQFPNVSYVVELKIDGL 114

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++I YE G F+ A  RGDG  GEDV+  IR I +IP  L LNI E + VRGEV++    
Sbjct: 115 AMSIDYEDGLFIQAVTRGDGTVGEDVTQNIRVIDSIP--LKLNIDEDVTVRGEVFMPVKS 172

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+         +AN RNAA+G +R+L+     TR L+ F + L    E+    QY+
Sbjct: 173 FTRVNESRKENNEALFANCRNAAAGTIRQLDSKVVATRGLDGFWYTLVNAKELGITSQYD 232

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  ++ +GF VN  ++  NT   +     E++ +R++LPYDIDG+V KV++F++Q++LG
Sbjct: 233 SLTYLKQIGFKVNPEIKLCNTIDAVWQRIEEIEHMRASLPYDIDGVVIKVNDFAMQEELG 292

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  ++  TR+ DI + +GRTG +TP A+L PV I G+L++ ATLHNE
Sbjct: 293 FTVKTPRWAIAYKFKAEEVKTRVEDIFVTVGRTGKITPNAKLTPVQISGSLVSYATLHNE 352

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           DYI             +DIRVGD V+V++AGE+IP++V + V+ R    +P+ FP  CP+
Sbjct: 353 DYI-----------TNKDIRVGDEVVVRKAGEIIPEIVSVDVSNRTDVIKPYHFPKVCPV 401

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C   +VR          A H C     CSA+  E L HF SRDA NI+ LG++++     
Sbjct: 402 CMGHLVRFEGE------ADHYCVNV-DCSAKISEALVHFASRDAMNIDTLGERRVYQLHD 454

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           ++     +    DI+TLQ  +      +E +   G  S   L D+I   +N S+E+ IF 
Sbjct: 455 AK----LLNTITDIYTLQEHKD----ALEKLEKMGPKSAEKLLDAIENSKNNSVEKLIFG 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRHVGA+ +  LA YY +  +               +  LI +  +G +IAQ++V F+
Sbjct: 507 LGIRHVGAKTSNVLAAYYKTIASLMDAT----------YDELIEIDEIGGVIAQSVVSFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +   N   +E LL+        H    SS+ E  K V TGTLQ + R  A++ +      
Sbjct: 557 EIDHNRELIEDLLERGVNGNYNHVV-TSSKFEGMKFVLTGTLQTMGRTDAKKMIESF--- 612

Query: 677 VSAILSR----------KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
                            KTD+++ G++ GSKL KAQ LGVK   EE+FL 
Sbjct: 613 -------GGSVSGSVSSKTDVVVYGESAGSKLTKAQSLGVKTWTEEEFLN 655


>gi|329942957|ref|ZP_08291736.1| DNA ligase, NAD-dependent [Chlamydophila psittaci Cal10]
 gi|332287548|ref|YP_004422449.1| NAD-dependent DNA ligase [Chlamydophila psittaci 6BC]
 gi|313848123|emb|CBY17124.1| putative DNA ligase [Chlamydophila psittaci RD1]
 gi|325506604|gb|ADZ18242.1| NAD-dependent DNA ligase [Chlamydophila psittaci 6BC]
 gi|328815217|gb|EGF85206.1| DNA ligase, NAD-dependent [Chlamydophila psittaci Cal10]
 gi|328914798|gb|AEB55631.1| DNA ligase, NAD-dependent [Chlamydophila psittaci 6BC]
          Length = 660

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 236/701 (33%), Positives = 382/701 (54%), Gaps = 48/701 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R++  SL ++I   D  YY    P I D +YD   R+  +I    P+         P  +
Sbjct: 7   REQYLSLCKDIEEDDYRYYVLHNPTISDYDYDMKMRQLLSIEAQHPEWKVLW---SPSMR 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   + S   V H+ P LS+   + +E+L +F +R+ +        +  +TLE KIDG 
Sbjct: 64  LGDRASGSFPIVAHAHPMLSIANAYTLEELYEFFSRMEKALG----YTPKYTLEIKIDGI 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + +RYE+   + A  RG+G  GED++A IR I T+P  LS   PE +EVRGEV+ S+  
Sbjct: 120 AVALRYEQRVLLQALSRGNGRKGEDITANIRTIRTLPLRLSKEAPEFLEVRGEVFFSRAT 179

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N       +  +ANPRNAA G L+ L+  +     N  +   G  +E   +  YE 
Sbjct: 180 FRQINAAQRQAEKPEFANPRNAAGGTLKLLSAKEA-AQRNLEISIYGSLAEENKRSHYEN 238

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L   R  GFPV    RQ  T   +V+  +E++++R  LP +IDG+V KVD+   QK LG 
Sbjct: 239 LLLCREWGFPVLGQPRQCQTIDEVVASLHEIEALRDQLPMEIDGVVIKVDDIEDQKVLGM 298

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+  RW +++K+A ++A T L DI +Q+GRTG+LTPVA+L PV + G+ ++ A+L+NED
Sbjct: 299 TAKHYRWALAYKYAPERAETILEDILVQVGRTGVLTPVAKLRPVVLSGSRVSRASLYNED 358

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +DIR+GD V V++ GE+IP+VV + + +R   +QP+  P +CP+C
Sbjct: 359 EIER-----------KDIRIGDTVYVEKGGEIIPQVVGVCLEKRPEGSQPWVMPEYCPVC 407

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
             +V R+ +        + RCT  L CSA  +E+++ F  RDA +I+ LG++ +   F  
Sbjct: 408 HGKVTRESDK------VSVRCTNPL-CSAGVIEKIRFFCGRDALDIDHLGEKVVTKLFD- 459

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I    DIF +            ++ GF D S+ N+  SI K +++ L+RF+ +L
Sbjct: 460 ---LGCIHRRCDIFQITEEDL------RHVPGFKDKSIRNVLKSIEKAKSVPLDRFLTAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI +VG   A +LA+++LS ++                  L  V  +GD +A++IV ++ 
Sbjct: 511 GIPYVGIGGANALAQHFLSLESVMSA----------SLDDLKSVEGIGDKVAESIVAYFN 560

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
            P +   ++ +L      +    +  SS    K  V TG+L+K+ R +A+ Y+   G  V
Sbjct: 561 QPEHREEIQIMLSLGVHVLPYRRE--SSSCLGKTFVITGSLEKLTRSEAETYIRNCGGKV 618

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + +S+ TD ++VG +PGSKL+KAQ+L + I++E++ L +L
Sbjct: 619 GSSVSKNTDYLVVGKDPGSKLQKAQELEIPILSEDELLKIL 659


>gi|268681538|ref|ZP_06148400.1| DNA ligase [Neisseria gonorrhoeae PID332]
 gi|268621822|gb|EEZ54222.1| DNA ligase [Neisseria gonorrhoeae PID332]
          Length = 829

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 251/846 (29%), Positives = 382/846 (45%), Gaps = 163/846 (19%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S+    + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+
Sbjct: 6   SMNPTAQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PD 62

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDD 123
            P  ++GGE      +V H +P LSL   ++ +         ++  F  R+       D 
Sbjct: 63  SPTQRVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DG 119

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-P 182
            +  + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L     P
Sbjct: 120 GNPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTP 179

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH 241
           E+IEVRGEV + K DF  LN      G+KP+ANPRNAA+G LR+L+      R L+FF +
Sbjct: 180 ELIEVRGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPY 239

Query: 242 GLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDI 299
            + +      A+   + L   + LGF + NG        G V  + E    +    PY+I
Sbjct: 240 SIARQQGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEI 299

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG V KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+
Sbjct: 300 DGTVVKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQ 359

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I  
Sbjct: 360 PVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFE 408

Query: 420 ERHPDA--------------------------------QPFSFPSFCPICQSRVVRDLNP 447
            R                                    +P+  P+ CPIC+S + R+   
Sbjct: 409 RRPMQETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPTRCPICRSEIEREEGE 468

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                 A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +       + 
Sbjct: 469 ------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLY 522

Query: 508 A-DIFTLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRR 546
             DI TLQ+ ++T                    S    +N          N+   I   +
Sbjct: 523 RIDIPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGK 582

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD------------ 594
              L RF+F+LGIRHVG   A++LA+ + + +   +    ++A   D             
Sbjct: 583 TPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFF 642

Query: 595 --------WLSLIR--------------------------VPL--VGDIIAQAIVE---- 614
                      L+                           +P   + +  AQA+ E    
Sbjct: 643 AQAEQQAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQ 702

Query: 615 -----------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKL 652
                            +    +N   +E L    +      E    S      +  K  
Sbjct: 703 SIEGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTF 762

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E 
Sbjct: 763 VLTGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEA 822

Query: 713 QFLFLL 718
           + L LL
Sbjct: 823 ELLTLL 828


>gi|268594283|ref|ZP_06128450.1| DNA ligase [Neisseria gonorrhoeae 35/02]
 gi|268547672|gb|EEZ43090.1| DNA ligase [Neisseria gonorrhoeae 35/02]
          Length = 827

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 251/846 (29%), Positives = 383/846 (45%), Gaps = 163/846 (19%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S+    + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+
Sbjct: 4   SMNPTAQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PD 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDD 123
            P  ++GGE      +V H +P LSL   ++ +         ++  F  R+       D 
Sbjct: 61  SPTQRVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DG 117

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-P 182
            +  + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L     P
Sbjct: 118 GNPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVP 177

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH 241
           E+IEVRGEV + K DF  LN      G+KP+ANPRNAA+G LR+L+      R L+FF +
Sbjct: 178 ELIEVRGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPY 237

Query: 242 GLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDI 299
            + +      A+   + L   + LGF + NG        G V  + E    +    PY+I
Sbjct: 238 SIARQQGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEI 297

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+
Sbjct: 298 DGMVVKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQ 357

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I  
Sbjct: 358 PVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFE 406

Query: 420 ERHPDA--------------------------------QPFSFPSFCPICQSRVVRDLNP 447
            R                                    +P+  P+ CPIC+S + R+   
Sbjct: 407 RRPMQETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE 466

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                 A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +       + 
Sbjct: 467 ------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLY 520

Query: 508 A-DIFTLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRR 546
             DI TLQ+ ++T                    S    +N          N+   I   +
Sbjct: 521 RIDIPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGK 580

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD------------ 594
              L RF+F+LGIRHVG   A++LA+ + + +   +    ++A   D             
Sbjct: 581 TPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFF 640

Query: 595 --------WLSLIR--------------------------VPL--VGDIIAQAIVE---- 614
                      L+                           +P   + +  AQA+ E    
Sbjct: 641 AQAEQQAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQ 700

Query: 615 -----------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKL 652
                            +    +N   +E L    +      E    S      +  K  
Sbjct: 701 SIEGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTF 760

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E 
Sbjct: 761 VLTGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEA 820

Query: 713 QFLFLL 718
           + L LL
Sbjct: 821 ELLTLL 826


>gi|308233598|ref|ZP_07664335.1| DNA ligase, NAD-dependent [Atopobium vaginae DSM 15829]
 gi|328944216|ref|ZP_08241680.1| DNA ligase [Atopobium vaginae DSM 15829]
 gi|327491135|gb|EGF22910.1| DNA ligase [Atopobium vaginae DSM 15829]
          Length = 792

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 222/729 (30%), Positives = 349/729 (47%), Gaps = 63/729 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
              +  L + + YH   YY    P+I D+++D+  +    +   +P L   +D +   ++
Sbjct: 84  EARVRELRKLLEYHAYRYYALDAPLITDNQFDSYLQELLHLEKTYPYL---DDEHSYTHR 140

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           IGG ++    +V H+    S++   N+E+L  ++ +          N + +T E KIDG 
Sbjct: 141 IGGYVSQQFRRVAHAQRMYSMDDAMNLEELDAWLEKTDEALGSSPSNPVAYTCELKIDGL 200

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR---------VLSLNIPEIIEVR 188
            + + Y  G+ + AA RGDG  GEDV+A +  I  +P          + +      IEVR
Sbjct: 201 GVALTYHNGQLLRAATRGDGSVGEDVTANVITIKDVPHTLLRDGLQKIANTGFGSDIEVR 260

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247
           GEVY+ K+ F+ LN+     GR  +ANPRNAA+G LR+ N      R L  F++ L    
Sbjct: 261 GEVYMPKHSFVRLNETADDEGRPTFANPRNAAAGSLRQKNARITAHRDLETFIYALASRE 320

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            +    Q + L  +   GF VN   ++      +  Y       RS+L YDIDG+V KVD
Sbjct: 321 SLDVHTQTDFLAWLSSCGFSVNPHAQRCVCAQEVHDYCARALKNRSSLDYDIDGVVVKVD 380

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            F+ Q QLG  AR+PRW I+ KF  +Q  T L +I IQ+GRTG+LTPVA  +PV + G+ 
Sbjct: 381 SFAFQDQLGFTARAPRWAIAFKFPPEQKQTILREIRIQVGRTGVLTPVAEFDPVLVAGST 440

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           I  ATLHN D ++            RD+RVGD ++V +AG+VIP+VV  ++         
Sbjct: 441 IARATLHNIDEVRR-----------RDVRVGDTIVVHKAGDVIPEVVGPVLEGDLAALHF 489

Query: 428 ----FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
               +  P  CP C + VVR+ +    +          L C AQ  +RL H+ SR A +I
Sbjct: 490 ARPVWDMPQTCPACGASVVREDDEVAYR-------CVSLDCPAQASQRLIHWCSRKAMDI 542

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFT-------------LQRRQQTSTTKIENILGF 530
           +GLG + +    +       ++  AD +                        K  + +  
Sbjct: 543 DGLGSELITRLTEQ----GYVKDVADYYDKLSLENLSSLDTGRTYDTTNKLHKQGDAIRV 598

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
           G    + +   +NK +   L R +F LGIRHVGA +A  +   Y   ++  +        
Sbjct: 599 GKKIASKIIAQLNKSKQAGLARVLFGLGIRHVGASVAELIVATYPDLESLLRA------- 651

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIEN 649
              D   +  +  VG  IA ++V+F   P+N+  +  L           +K  +   +  
Sbjct: 652 ---DKDEIAAIDGVGPKIAASLVDFLHMPQNMEVLIRLQAAGVVLSAPEQKALLPQSLTG 708

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
              V TGTL+ + R  A + +  LGA VS  +SRKT  +I G+  GSKL+KA++LGV ++
Sbjct: 709 YTFVLTGTLEDLSRTAAGDALKALGAKVSGSVSRKTSFVIAGEQAGSKLDKARELGVCVI 768

Query: 710 NEEQFLFLL 718
             ++   +L
Sbjct: 769 GRKELDEIL 777


>gi|225870290|ref|YP_002746237.1| DNA ligase [Streptococcus equi subsp. equi 4047]
 gi|254781420|sp|C0M6L2|DNLJ_STRE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225699694|emb|CAW93413.1| DNA ligase [Streptococcus equi subsp. equi 4047]
          Length = 652

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 214/703 (30%), Positives = 349/703 (49%), Gaps = 55/703 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DSEYD L R    +   +P        + P   
Sbjct: 2   KKRIRELTDLLNQYRQEYYTNDAPSVSDSEYDKLYRELVELEQTYPAYILK---DSPTQL 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  +     K  H  P  SL+  ++ E+L  F  RI             +  E KIDG 
Sbjct: 59  VGSTILTGFQKYQHQYPLFSLQDAFSREELNAFDQRIK-----SAFPEAEYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG  GE+++  I+ I  IP    L+    + +RGE Y+S+  
Sbjct: 114 SISLVYEAGVLKVGATRGDGTIGENITENIKNIKDIP--KRLSQALDVTIRGEAYMSRQA 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD--ITRYLNFFVHGLGKTSEIFAKGQY 255
           F  +N+E    G   +ANPRNAA+G LR+L+       +   F    +G      A  Q 
Sbjct: 172 FKTINEERQENGEPEFANPRNAAAGTLRQLDTRIVAKRQLATFLYQEVGL---ETADSQQ 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + L+++  LGF VN+    +++ + I  +   +++ R  LPY+IDG+V KV++ ++Q++L
Sbjct: 229 KTLERLADLGFSVNSHYLLSSSMNDIWDFIQSIEASREELPYEIDGVVVKVNQLAIQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++PRW I++KF  ++    ++ +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEIVSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR+GD V+V +AG++IP V+ ++  +R  D  P   P+ CP
Sbjct: 349 VDYI-----------AEKDIRIGDTVVVYKAGDIIPAVLRVVEAKRR-DQAPMPIPTACP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            CQS++V   +        A RC   L C +     L+HF SR A NI GLG   ++  +
Sbjct: 397 SCQSQLVHFEDE------VALRCINPL-CPSLVQRSLEHFASRQAMNIAGLGPAVVEKLY 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                A  +   ADI+ L      +      + G  + S   L  +I + +  S E+ +F
Sbjct: 450 S----AGLVHDVADIYRLSLEDLLT------LDGIKEKSAEKLLAAIEQSKANSAEKLLF 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIRH+GA+ +R + + Y   +                   L ++  +G +I Q++V++
Sbjct: 500 GLGIRHIGAKASRLILEAYGDLEALLAVT----------AEELAQIDGLGLVIGQSLVQY 549

Query: 616 YQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +Q  +    +  L              +  + +    +V TG L+K+ R +A E + QLG
Sbjct: 550 FQQEQAAQLLAELKSAGVNLAYLGQRPDQQAALFGLTVVLTGKLEKLNRTQAMEKLEQLG 609

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           A V+  +S+KTD+++ G   GSKL KAQQLG++I +E+  L L
Sbjct: 610 AKVTGSVSKKTDLVVAGSEAGSKLAKAQQLGIRIEDEDWLLNL 652


>gi|254493140|ref|ZP_05106311.1| DNA ligase [Neisseria gonorrhoeae 1291]
 gi|268598398|ref|ZP_06132565.1| DNA ligase [Neisseria gonorrhoeae MS11]
 gi|226512180|gb|EEH61525.1| DNA ligase [Neisseria gonorrhoeae 1291]
 gi|268582529|gb|EEZ47205.1| DNA ligase [Neisseria gonorrhoeae MS11]
          Length = 829

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 251/846 (29%), Positives = 383/846 (45%), Gaps = 163/846 (19%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S+    + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+
Sbjct: 6   SMNPTAQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PD 62

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDD 123
            P  ++GGE      +V H +P LSL   ++ +         ++  F  R+       D 
Sbjct: 63  SPTQRVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DG 119

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-P 182
            +  + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L     P
Sbjct: 120 GNPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTP 179

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH 241
           E+IEVRGEV + K DF  LN      G+KP+ANPRNAA+G LR+L+      R L+FF +
Sbjct: 180 ELIEVRGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPY 239

Query: 242 GLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDI 299
            + +      A+   + L   + LGF + NG        G V  + E    +    PY+I
Sbjct: 240 SIARQQGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEI 299

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+
Sbjct: 300 DGMVVKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQ 359

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I  
Sbjct: 360 PVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFE 408

Query: 420 ERHPDA--------------------------------QPFSFPSFCPICQSRVVRDLNP 447
            R                                    +P+  P+ CPIC+S + R+   
Sbjct: 409 RRPMQETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE 468

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                 A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +       + 
Sbjct: 469 ------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLY 522

Query: 508 A-DIFTLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRR 546
             DI TLQ+ ++T                    S    +N          N+   I   +
Sbjct: 523 RIDIPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGK 582

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD------------ 594
              L RF+F+LGIRHVG   A++LA+ + + +   +    ++A   D             
Sbjct: 583 TPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFF 642

Query: 595 --------WLSLIR--------------------------VPL--VGDIIAQAIVE---- 614
                      L+                           +P   + +  AQA+ E    
Sbjct: 643 AQAEQQAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQ 702

Query: 615 -----------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKL 652
                            +    +N   +E L    +      E    S      +  K  
Sbjct: 703 SIEGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTF 762

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E 
Sbjct: 763 VLTGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEA 822

Query: 713 QFLFLL 718
           + L LL
Sbjct: 823 ELLTLL 828


>gi|121634462|ref|YP_974707.1| DNA ligase [Neisseria meningitidis FAM18]
 gi|166216218|sp|A1KSS7|DNLJ_NEIMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120866168|emb|CAM09908.1| putative DNA ligase [Neisseria meningitidis FAM18]
          Length = 841

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 248/842 (29%), Positives = 380/842 (45%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D     
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  I+ +  IP  L     PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           VRGEV + K DF+ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMLKADFVALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303
             +   A+   + L   + LGF + NG          V  + E    +    PY+IDG+V
Sbjct: 260 QQDGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550
            L         +  +                               N+   I   +   L
Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---------------- 594
            RF+F+LGIRHVG   A++LA+ + + +   +    ++A   D                 
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658

Query: 595 ----WLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614
                  L+                           +P   + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQTDKALPTDWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|124024594|ref|YP_001018901.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus str. MIT
           9303]
 gi|166216228|sp|A2CDS6|DNLJ_PROM3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123964880|gb|ABM79636.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9303]
          Length = 696

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 207/714 (28%), Positives = 343/714 (48%), Gaps = 63/714 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +  + L Q ++     YY    P + D+ YD L R    +      L     P+ P  +I
Sbjct: 10  ERAAELRQLLNQAAHSYYVLDTPTMEDAVYDRLYRELLDLEVKDSSLL---TPDSPTQRI 66

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ-----KKDDNSIFFTLEPK 133
           GG        V H IP LSL+  +N+++L  +  R+ +        K     +    E K
Sbjct: 67  GGAPAQGFASVPHRIPLLSLDNAFNVDELTGWYVRLVKLLGYQTNPKTPQPDLSMVGELK 126

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEVRGEVY 192
           IDG  + + YE G  + AA RGDG +GE+++A +R I +IP  L L  P   +EVRGE +
Sbjct: 127 IDGNALALSYEHGVLIRAATRGDGANGEEITANVRTIASIPLRLQLVHPPAWLEVRGEAF 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF- 250
           I  + F  +N      G   +ANPRNA +G LR+L+P    +R L+FF + L        
Sbjct: 187 IPNSTFADINTARGERGDVAFANPRNACAGTLRQLDPKVVASRQLDFFAYTLHLPDNWQA 246

Query: 251 -------AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                     Q+ +LQ ++ +GF VN           +  ++      R  LPY  DG+V
Sbjct: 247 KADDPASPMNQWAVLQWLQAIGFKVNPNTALLTDLTAVEHFFKLWDEARHQLPYATDGVV 306

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+++  LQ+  G   ++PRW I+ K+A ++A ++LL +  Q+GRTG +TPVA  E + +
Sbjct: 307 VKLNDLQLQETAGFTQKAPRWAIALKYAAEEAPSKLLRLTCQVGRTGAVTPVAEFEAIPL 366

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ ATLHN + +  L           D+  GD ++V++AGE+IP+V+ ++   R  
Sbjct: 367 AGTSVSRATLHNANRVSEL-----------DLHSGDTIVVRKAGEIIPEVIGVLRELRPA 415

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            AQ    P  CP C+S +VR+         AA RC    +C A     L+H+VS+ A ++
Sbjct: 416 GAQTLKLPHICPECRSDLVREEGE------AATRCVN-NSCPAILRGTLRHWVSKGALDV 468

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GLG + ++           ++  AD++ L+     S          G+ S  NL  ++ 
Sbjct: 469 DGLGSKLIEQLVNR----GLVQSIADLYALEASLLASM------DRMGNKSTENLITALQ 518

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             ++    + ++ LGI HVG   A++LAK + S    A                +  V  
Sbjct: 519 ASKSKPWHKQLYGLGIHHVGEVNAKALAKKFPSAATLANAACK-------APEQITSVFG 571

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---------EIENKKLVF 654
           VG+ IAQ++ +++  P N   +  L K++  S+  +E  ++           ++ +  V 
Sbjct: 572 VGNEIAQSLQQWFATPANQELLAKL-KQLGISLEANEDELAHDTDQKQRTVSLQGQTFVL 630

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
           TGTL  + R +AQ  +   G  V++ +S+ T  ++ G   GSKL KA++L V +
Sbjct: 631 TGTLPTLSRSEAQALIEAAGGKVNSSVSKNTSYVVAGAEAGSKLNKAEKLRVTV 684


>gi|73667316|ref|YP_303332.1| NAD-dependent DNA ligase [Ehrlichia canis str. Jake]
 gi|123732189|sp|Q3YRC1|DNLJ_EHRCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|72394457|gb|AAZ68734.1| NAD-dependent DNA ligase [Ehrlichia canis str. Jake]
          Length = 677

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 264/708 (37%), Positives = 408/708 (57%), Gaps = 39/708 (5%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E+A+ EL  L  +I +HD  YY    P I D+EYD L  + + I  +FP+LA     
Sbjct: 1   MKQEEAKLELDKLNSQIQHHDFLYYTQDNPQITDAEYDVLCHKRNLILESFPELA---SN 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N   + +G   +    KV H+   LSL+  +N +D+ KFITR  +     +  SI  + E
Sbjct: 58  NNYQDNVGSTPDAKFAKVKHAEKMLSLDNAFNQQDIEKFITRTKKLLDMDNSQSIAISCE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG   ++ Y+KG+   A+ RG+G+ GE+++  ++ I  +P  +    P+ +EVRGE+
Sbjct: 118 LKIDGLSFSVIYKKGEISQASTRGNGYFGENITNNVKTIKNLPHTIQNA-PDSLEVRGEI 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           YI ++DF       +      +ANPRNAA+G +R+L+      R L +F++ +  T  + 
Sbjct: 177 YIDRSDF-----IQLNKDGNNFANPRNAAAGSVRQLDINITAQRKLKYFMYTIVNTKCLT 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E L +++ LGF VN      N     +++YN+  + RS + YDIDG++YKV++  
Sbjct: 232 ---QEETLNQLKTLGFCVNEHTITTNNIEDALNFYNQFYNNRSNISYDIDGIIYKVNDIK 288

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q  LG   +SPRW I++KF   +A T +  I IQIGRTG+LTP+A L P+NIGG ++T 
Sbjct: 289 SQHILGATNKSPRWAIAYKFPAAEAKTLVNKISIQIGRTGVLTPIAELSPINIGGVIVTR 348

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN+  I+            +DIR GD V+VKRAG+VIP+VVD+  N R  +   F F
Sbjct: 349 ASLHNKSEIER-----------KDIREGDYVIVKRAGDVIPQVVDVDKNLRAQELTKFIF 397

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S + +           +  CTG L C  Q LE++KHFVS+DAFNI G GK+Q
Sbjct: 398 PTTCPSCGSNLFQAEQE------VSIYCTGELFCKNQILEKIKHFVSKDAFNIIGFGKKQ 451

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L FF++       I    DIFTL+ +   S  K+E++ G+G+ S+ NL+ +IN  + ISL
Sbjct: 452 LLFFYEQ----GLITNIVDIFTLEEKISNSDLKLESLHGWGEKSIHNLFSAINNSKTISL 507

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E FIF+LGIR VG  IA+ LAK++LSY+ +  E+  +    N     L+ +  +G     
Sbjct: 508 ENFIFALGIRFVGKYIAKILAKHFLSYEKWYHEMLRLAQDENY----LLNIQQIGHKTIH 563

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++  F+    N+  +  L++ ++ +  +   ++ S +  K +VFTG L  + RH+A+   
Sbjct: 564 SLKMFFTEQHNLDTINNLVRHLTITDAKTTSHL-SLLHGKTIVFTGELSNMSRHEAKTKS 622

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              GA VS+ LS+ TD +IVG+NPGSK +KAQ L ++I+ E+ +L  +
Sbjct: 623 ETAGAKVSSSLSKNTDFLIVGNNPGSKYKKAQSLNIQILTEDLWLQYI 670


>gi|268596277|ref|ZP_06130444.1| DNA ligase [Neisseria gonorrhoeae FA19]
 gi|268603059|ref|ZP_06137226.1| DNA ligase [Neisseria gonorrhoeae PID1]
 gi|291044437|ref|ZP_06570146.1| DNA ligase [Neisseria gonorrhoeae DGI2]
 gi|268550065|gb|EEZ45084.1| DNA ligase [Neisseria gonorrhoeae FA19]
 gi|268587190|gb|EEZ51866.1| DNA ligase [Neisseria gonorrhoeae PID1]
 gi|291011331|gb|EFE03327.1| DNA ligase [Neisseria gonorrhoeae DGI2]
          Length = 829

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 251/846 (29%), Positives = 382/846 (45%), Gaps = 163/846 (19%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S+    + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+
Sbjct: 6   SMNPTAQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PD 62

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDD 123
            P  ++GGE      +V H +P LSL   ++ +         ++  F  R+       D 
Sbjct: 63  SPTQRVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DG 119

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-P 182
            +  + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L     P
Sbjct: 120 GNPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTP 179

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH 241
           E+IEVRGEV + K DF  LN      G+KP+ANPRNAA+G LR+L+      R L+FF +
Sbjct: 180 ELIEVRGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPY 239

Query: 242 GLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDI 299
            + +      A+   + L   + LGF + NG        G V  + E    +    PY+I
Sbjct: 240 SIARQQGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEI 299

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG V KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+
Sbjct: 300 DGTVVKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQ 359

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I  
Sbjct: 360 PVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFE 408

Query: 420 ERHPDA--------------------------------QPFSFPSFCPICQSRVVRDLNP 447
            R                                    +P+  P+ CPIC+S + R+   
Sbjct: 409 RRPMQETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE 468

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                 A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +       + 
Sbjct: 469 ------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLY 522

Query: 508 A-DIFTLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRR 546
             DI TLQ+ ++T                    S    +N          N+   I   +
Sbjct: 523 RIDIPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGK 582

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD------------ 594
              L RF+F+LGIRHVG   A++LA+ + + +   +    ++A   D             
Sbjct: 583 TPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFF 642

Query: 595 --------WLSLIR--------------------------VPL--VGDIIAQAIVE---- 614
                      L+                           +P   + +  AQA+ E    
Sbjct: 643 AQAEQQAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQ 702

Query: 615 -----------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKL 652
                            +    +N   +E L    +      E    S      +  K  
Sbjct: 703 SIEGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTF 762

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E 
Sbjct: 763 VLTGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEA 822

Query: 713 QFLFLL 718
           + L LL
Sbjct: 823 ELLTLL 828


>gi|292657108|ref|YP_003537005.1| DNA ligase, NAD-dependent [Haloferax volcanii DS2]
 gi|291370943|gb|ADE03170.1| DNA ligase, NAD-dependent [Haloferax volcanii DS2]
          Length = 699

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 241/725 (33%), Positives = 372/725 (51%), Gaps = 46/725 (6%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  P E+LS E A  + + L + +  HD  YY  + P++ D+ YDAL  R  A+  AF  
Sbjct: 20  EFEPAESLSREAAEGQAALLREAVREHDHRYYVAADPLVSDAAYDALFSRLVALEDAFD- 78

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
               +  N P N++GGE   +L  V H  P LS+++  + +DLR+F  R+ R     +  
Sbjct: 79  ---LDTTNSPTNRVGGEPIDALETVEHVAPMLSIDQSTDADDLREFDERVRR-----EVG 130

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
           ++ +  EPK DG  + + YE G+FV AA RGDG  G+DVSA ++ IPT+P  L  + P+ 
Sbjct: 131 AVDYVCEPKFDGLSVEVVYEDGEFVRAATRGDGRRGDDVSAQVKTIPTVPLSLRGDHPDR 190

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244
           + VRGE+Y+ K+DF  LN   +  G   +ANPRNAA+G LR L+P+ +            
Sbjct: 191 LAVRGEIYMPKSDFSDLNARRVEAGEDAFANPRNAAAGTLRNLDPSVVADRPLAVFFYDI 250

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             +      Q+  L ++R  G  V + + +A      + Y + M++ R  L Y+IDG V 
Sbjct: 251 LDASARPDSQWAALDRLREWGLRVTDRIERAEDVAEAIDYRDRMQAARDDLDYEIDGTVI 310

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD    +++LGE++RS RW  ++KF  +   T + DI +Q+GRTG LTPVA L+PV++G
Sbjct: 311 KVDSRDARERLGEKSRSVRWAFAYKFPARHEVTTVRDIVVQVGRTGRLTPVAILDPVDVG 370

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ ATLHN D    L            + VGDRV VKRAG+VIP+VV++        
Sbjct: 371 GVTVSRATLHNPDERAAL-----------GVAVGDRVRVKRAGDVIPQVVEVT----EDG 415

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              + FP  CP+C S V RD             C+GGL+C AQ+   + HF  + A +I+
Sbjct: 416 GGCYEFPDECPVCGSAVDRD--------GPLAFCSGGLSCPAQREASIGHFAVKGAMDID 467

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++++         A  +   AD++ L          +  + G+G+ S  NL  ++  
Sbjct: 468 GLGEERVAQLVD----AGLVETVADLYDLTADD------LAELEGWGETSAENLVAAVEN 517

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            ++ SL+ F+  L I  VG   AR LA+ + S + F  E +      +     L  VP V
Sbjct: 518 AKHPSLDSFLVGLSIPEVGEATARGLAREFGSIEAFPIEADAEEDEFDAFEERLTTVPDV 577

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G+ +A+ + +F++N  N   + ALL           ++   E++    V TGTL    R 
Sbjct: 578 GETVARRVRDFFENADNRAVIRALLDRGV--DPEPVESGGDELDGLTFVVTGTLAA-SRS 634

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
              E V   G  V+  +S  TD ++VG+NPG SK + A+   V  + E +F  LL +   
Sbjct: 635 DVTELVESHGGNVTGSVSGNTDYLVVGENPGRSKRDDAEANDVPTLAETEFEALLAERGV 694

Query: 724 TLRIH 728
                
Sbjct: 695 AYPPE 699


>gi|238020272|ref|ZP_04600698.1| hypothetical protein GCWU000324_00147 [Kingella oralis ATCC 51147]
 gi|237868666|gb|EEP69670.1| hypothetical protein GCWU000324_00147 [Kingella oralis ATCC 51147]
          Length = 797

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 249/807 (30%), Positives = 395/807 (48%), Gaps = 132/807 (16%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            +QA++++ +L  +++ +   YY    P + DSEYD L R  +A+   +P       P  
Sbjct: 20  PQQAQQKIQTLTAQLNQYAHEYYTLDAPTVPDSEYDRLYRELEALETEYPQF---RLPES 76

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI----------EDLRKFITRIYRFWQKKDD 123
           P N++GG +      V H++P LSL   ++            ++R F  R+ +       
Sbjct: 77  PTNRVGGAVLDGFETVIHAVPMLSLANAFSPRDDEAGTFDHAEMRAFDERVCKDLGAAH- 135

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-P 182
               + +EPK DG  I++ Y+ G  + AA RGDG +GEDV+  I+ +  IP  L  +  P
Sbjct: 136 --TEYIIEPKFDGLAISLLYQNGILIQAATRGDGTTGEDVTENIKTVRNIPLRLHGDEVP 193

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
           ++IEVRGEV + K DF ALN   +  G+KP+ANPRNAA+G LR+LN      R L+FF +
Sbjct: 194 DLIEVRGEVLMLKADFAALNARQLDAGQKPFANPRNAAAGSLRQLNSAITAQRKLHFFGY 253

Query: 242 GLGK--TSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           G+ +  T+    +   + ++ +  LGF      +R       ++ +Y  M   R  LPY+
Sbjct: 254 GIARLSTAFRQPENHAQEIELLARLGFSEPQAQIRVCANIQEVLDFYETMAQQRPQLPYE 313

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KV++   Q+QLG  +R+PRW I+HKF  ++A T +  ID+Q+GRTG +TPVARL
Sbjct: 314 IDGMVVKVNDLRQQQQLGFVSRAPRWAIAHKFPAEEALTTVEAIDVQVGRTGSITPVARL 373

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +++
Sbjct: 374 KPVFVGGVTVTNATLHNQDEVAR-----------KDVRVGDTVVVRRAGDVIPEVVRVVL 422

Query: 419 NERH------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA 466
             R             P    F  P  CP+C S V R++        A  RCTGG+ C A
Sbjct: 423 ERRPMRNVDLLGERQEPQHPAFRLPETCPVCGSAVEREIGE------AVARCTGGIVCKA 476

Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN 526
           Q+ + L HF SR A +I GLG +Q++   + +     +   ADI+ L   +  +    ++
Sbjct: 477 QRAQGLIHFASRKAMDIVGLGDKQIEALVEQD----VLHSFADIYQLDIAKLQTIKDSKS 532

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE--- 583
                +    N+ D++   R   L RF+F+LGIRHVG   A+ LA  +  +    +    
Sbjct: 533 ---GANKWTHNILDAVAASRQPPLARFLFALGIRHVGESTAKQLAAAFGDWDTVRRAPEP 589

Query: 584 -------INNIIAHNNDDWLSLIR----VPL----------------------------- 603
                  I +++AH+   +  L      +                               
Sbjct: 590 VLACLPDIGSVVAHSIAHFFRLPEQQKLLDDLLHFVSPQEAAIATLVLEYATPARWLARL 649

Query: 604 ----VGDIIAQAIVE---------------------FYQNPRNICAVEA-------LLKE 631
               + +  AQ + +                     + + P N   +         L + 
Sbjct: 650 PDYKISEKRAQELWDLAGGSIAQLLADDALPSDWQAWRRQPENARLLRDIDAFFAQLPEH 709

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
             P+      ++ +EI  K  V TGTL  ++R +A   +   G  VS  +S+KTD ++ G
Sbjct: 710 ALPADNAVSGSLKNEITGKIFVLTGTLPTLKRDQAAALIEAAGGKVSGSVSKKTDFVVAG 769

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              GSKLEKAQ LG+ +++EE+ L +L
Sbjct: 770 AEAGSKLEKAQSLGITVLSEEELLGML 796


>gi|291288208|ref|YP_003505024.1| DNA ligase, NAD-dependent [Denitrovibrio acetiphilus DSM 12809]
 gi|290885368|gb|ADD69068.1| DNA ligase, NAD-dependent [Denitrovibrio acetiphilus DSM 12809]
          Length = 652

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 227/700 (32%), Positives = 353/700 (50%), Gaps = 53/700 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
              L  +++Y+   YY    P++ D+EYD L      I    P +      + P  ++G 
Sbjct: 3   YRELVDKLNYYSKKYYVEDDPVVADAEYDKLYNELLRIEAEDPSII---SHDSPSQRVGD 59

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +    L  VTH I  LSL   ++ E+L KF+  I       +       +EPKIDG  + 
Sbjct: 60  KPVTGLENVTHEIKLLSLSNAYSREELEKFVENI-----WDEYPGAEIVVEPKIDGAAMV 114

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YE GK V  A RGDG +GEDV+  IR I ++P  L +     + +RGEV++    F  
Sbjct: 115 LTYEDGKLVRGATRGDGTTGEDVTHNIRTIRSLP--LEIEKSGRMIIRGEVFMPVASFER 172

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQ 259
           LN      G K +ANPRNAA+G L+ L+        L+ F++G+            + ++
Sbjct: 173 LNRLKGEKGEKLFANPRNAAAGTLKLLDSKTAYERGLDVFLYGMDMGGTEH---HLKDME 229

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            M+ LGF +N   R+ N F  I ++   + S R++L YDIDG V KVD  + Q+ LG   
Sbjct: 230 LMKSLGFNINEMTRKFNNFEDIWAHVEYIGSRRNSLEYDIDGAVIKVDSKAYQRSLGSTI 289

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           +SP+W I++K+  ++A T L D+D Q+GRTG +TPVA+LEPV + G+ I+NATLHNED I
Sbjct: 290 KSPKWAIAYKYPAQEAVTILRDVDFQVGRTGSITPVAKLEPVFLAGSTISNATLHNEDEI 349

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
             L            I++GD+V +++ G++IPKVV  I++ER    +   F S CP+CQS
Sbjct: 350 ARL-----------GIKIGDKVTIRKGGDIIPKVVRPIIDERDGSERDIEFLSNCPVCQS 398

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           ++ ++      K      C   + C AQ+  +L HF SR A +I+G G+  ++      +
Sbjct: 399 KLQKEETDINRK------CINPV-CPAQRKLKLLHFASRKAMDIQGFGEALVNKLVDDGE 451

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
                 I    F   + +           G+G+ SV  L+++I   +    ++ ++ LGI
Sbjct: 452 LHDVADIYEKRFDYLKEE----------DGYGEKSVQKLHEAIENSKKKPFDKVLYGLGI 501

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           RHVG   A+ LA+Y+                   D  +L+ V  +G   A AIV  + N 
Sbjct: 502 RHVGERTAQVLAEYFGDIDKLVSA----------DEEALVNVRDIGSETAGAIVNSFAND 551

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
                +  L K         ++  S  +  K  V TGTL  + R   ++ +   G  V +
Sbjct: 552 DLSNIINRLKKSGLCFTAEKKEKASDVLNGKTFVVTGTLS-LPRDYFKKVIESNGGKVLS 610

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +S K D ++VG+N GSKLEKAQ+LGV I++E     +L+
Sbjct: 611 AVSGKLDYLLVGENAGSKLEKAQKLGVAIIDESGLTKMLK 650


>gi|268600753|ref|ZP_06134920.1| DNA ligase [Neisseria gonorrhoeae PID18]
 gi|268683767|ref|ZP_06150629.1| DNA ligase [Neisseria gonorrhoeae SK-92-679]
 gi|268686007|ref|ZP_06152869.1| DNA ligase [Neisseria gonorrhoeae SK-93-1035]
 gi|293399617|ref|ZP_06643770.1| DNA ligase, NAD-dependent [Neisseria gonorrhoeae F62]
 gi|268584884|gb|EEZ49560.1| DNA ligase [Neisseria gonorrhoeae PID18]
 gi|268624051|gb|EEZ56451.1| DNA ligase [Neisseria gonorrhoeae SK-92-679]
 gi|268626291|gb|EEZ58691.1| DNA ligase [Neisseria gonorrhoeae SK-93-1035]
 gi|291610186|gb|EFF39308.1| DNA ligase, NAD-dependent [Neisseria gonorrhoeae F62]
          Length = 829

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 252/846 (29%), Positives = 383/846 (45%), Gaps = 163/846 (19%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S+    + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+
Sbjct: 6   SMNPTAQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PD 62

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDD 123
            P  ++GGE      +V H +P LSL   ++ +         ++  F  R+       D 
Sbjct: 63  SPTQRVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DG 119

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-P 182
            +  + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L     P
Sbjct: 120 GNPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVP 179

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH 241
           E+IEVRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF +
Sbjct: 180 ELIEVRGEVLMLKADFAALNQRQTENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPY 239

Query: 242 GLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDI 299
            + +    + A+   + L   + LGF + NG        G V  + E    +    PY+I
Sbjct: 240 SVARQQGGLIAEEHIQELAYFQALGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEI 299

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG V KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+
Sbjct: 300 DGTVVKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQ 359

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I  
Sbjct: 360 PVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFE 408

Query: 420 ERHPDA--------------------------------QPFSFPSFCPICQSRVVRDLNP 447
            R                                    +P+  P+ CPIC+S + R+   
Sbjct: 409 RRPMQETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE 468

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                 A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +       + 
Sbjct: 469 ------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLY 522

Query: 508 A-DIFTLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRR 546
             DI TLQ+ ++T                    S    +N          N+   I   +
Sbjct: 523 RIDIPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGK 582

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD------------ 594
              L RF+F+LGIRHVG   A++LA+ + + +   +    ++A   D             
Sbjct: 583 TPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFF 642

Query: 595 --------WLSLIR--------------------------VPL--VGDIIAQAIVE---- 614
                      L+                           +P   + +  AQA+ E    
Sbjct: 643 AQAEQQAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQ 702

Query: 615 -----------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKL 652
                            +    +N   +E L    +      E    S      +  K  
Sbjct: 703 SIEGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTF 762

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V TGTL   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E 
Sbjct: 763 VLTGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEA 822

Query: 713 QFLFLL 718
           + L LL
Sbjct: 823 ELLTLL 828


>gi|225868755|ref|YP_002744703.1| DNA ligase [Streptococcus equi subsp. zooepidemicus]
 gi|225702031|emb|CAW99626.1| DNA ligase [Streptococcus equi subsp. zooepidemicus]
          Length = 652

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 215/703 (30%), Positives = 350/703 (49%), Gaps = 55/703 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +K +  L   ++ +   YY    P + DSEYD L R    +   +P        + P   
Sbjct: 2   KKRIRELTDLLNQYRQEYYTNDAPSVSDSEYDKLYRELVELEQTYPAYILK---DSPTQL 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H  P  SL+  ++ E+L  F  RI             +  E KIDG 
Sbjct: 59  VGGTILTGFQKYQHQYPLFSLQDAFSREELNAFDQRIK-----SAFPEAEYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE G     A RGDG  GE+++  I+ I  IP    L+    + +RGE Y+S+  
Sbjct: 114 SISLVYEAGVLKVGATRGDGTIGENITENIKNIKDIP--KRLSQALDVTIRGEAYMSRQA 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD--ITRYLNFFVHGLGKTSEIFAKGQY 255
           F  +N+E    G   +ANPRNAA+G LR+L+       +   F    +G      A+ Q 
Sbjct: 172 FKTINEERQENGEPEFANPRNAAAGTLRQLDTRIVAKRQLATFLYQEVGL---EAAESQQ 228

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
             L+++  LGF VN+    +++   I  +   +++ R  LPY+IDG+V KV++ ++Q++L
Sbjct: 229 RTLERLADLGFSVNSHYLLSSSMTDIWDFIQSIEATREQLPYEIDGVVIKVNQLAIQEEL 288

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   ++PRW I++KF  ++    ++ +D  +GRTG++TP A L PV + G  ++ ATLHN
Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEIVSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR+GD V+V +AG++IP V+ ++  +R  +  P   P+ CP
Sbjct: 349 VDYI-----------AEKDIRIGDTVVVYKAGDIIPAVLRVVEAKR-SNQTPMPIPTACP 396

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            CQS++V   +        A RC   L C +     L+HF SR A  I GLG   ++  +
Sbjct: 397 SCQSQLVHFEDE------VALRCINPL-CPSLIQRSLEHFASRQAMAIAGLGPAVVEKLY 449

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                A  +   ADI+ L      +      + G  + S   L  +I + +  S E+ +F
Sbjct: 450 S----AGLVHDVADIYRLSLEDLLT------LDGIKEKSAEKLLAAIEQSKANSAEKLLF 499

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            LGIRHVGA+ +R + + Y   +                   L ++  +G +I Q++V++
Sbjct: 500 GLGIRHVGAKASRLILETYGDLETLLSVT----------AEELAQIDGLGLVIGQSLVQY 549

Query: 616 YQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           +Q  +    +  L              +  +E+    +V TG L+K+ R +A+E + QLG
Sbjct: 550 FQQDQAAQLLAELKSAGVNLAYLGQRPDRQAELFGFTVVLTGKLEKLNRTQAKEKLEQLG 609

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           A V+  +S+KTD+++ G   GSKL KAQQLG++I +E+  L L
Sbjct: 610 AKVTGSVSKKTDLVVAGSEAGSKLAKAQQLGIRIEDEDWLLNL 652


>gi|254374741|ref|ZP_04990222.1| hypothetical protein FTDG_00916 [Francisella novicida GA99-3548]
 gi|151572460|gb|EDN38114.1| hypothetical protein FTDG_00916 [Francisella novicida GA99-3548]
          Length = 678

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 255/713 (35%), Positives = 389/713 (54%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  + +  +  L   +S     Y+   KPII DS+YD L R    + +  P        
Sbjct: 14  LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N  L+++GGE+      + H     SL  ++++E+LR F  +I           I    E
Sbjct: 71  NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYGKIE--------YDIELECE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P    + N PE +EVRGE
Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--S 247
           + + K  FL+LN+ M     K +ANPRNAA+G +R L+      R L  + +G+G     
Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            +  + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGLV+KV+
Sbjct: 243 FVHPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ  +G  AR P+W +++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG +
Sbjct: 303 NIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN + IK            +DIRV DRV+V+RAG+VIP+VV  +   R PDAQ 
Sbjct: 363 VSNATLHNINEIKR-----------KDIRVSDRVIVRRAGDVIPEVVKSLPQYRKPDAQV 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP+C S +      +     A +RCTGG  C AQ  ERLKHFVSR A +I+ LG
Sbjct: 412 VEMPISCPVCDSAI------ENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++        A  I+ PADI+ L   Q T       +   G  S  N+ DSI K + 
Sbjct: 466 AKLIEQLV----AANLIKYPADIYKLNFDQLTG------LERMGAKSSQNVLDSIKKSKT 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFIF++GI+ +G   +  LA ++ S ++F              +  LI +  +G+I
Sbjct: 516 PSLARFIFAIGIKDIGEVSSDVLANHFGSLESFRDA----------KFEELIEINDIGEI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +A  IV F+ +  NI  VE LL       +  + E   +     K +V TG+ +   R +
Sbjct: 566 MANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+    LL
Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678


>gi|304436815|ref|ZP_07396781.1| NAD-dependent DNA ligase LigA [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370187|gb|EFM23846.1| NAD-dependent DNA ligase LigA [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 677

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 217/718 (30%), Positives = 354/718 (49%), Gaps = 45/718 (6%)

Query: 12  LSI-EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           +S  ++ + ELS L ++I  +   YY  ++  I D ++D L  R   +  A+P+L     
Sbjct: 1   MSKIDEVKTELSELRRKIRKYSKQYYDDNESEISDYDFDMLMMRLKKLEAAYPELI---T 57

Query: 71  PNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            N P   +GG     +   V H +P LSL+ +++ E++  F+  +          +  F 
Sbjct: 58  KNSPTRTVGGSAQREVGLLVPHDVPMLSLQDVFSEEEIHAFVDNV-----LAHFPAAEFV 112

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           +E KIDG  + +RYE G    A  RGDG   GEDV+A  R I  + + L   +P   EVR
Sbjct: 113 VEEKIDGLSLALRYENGVLARAITRGDGIVQGEDVTANARVIDDVVQKLHDALPY-FEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247
           GEVY+ +  F  +N+    +G KP+ANPRN A+G LR+L+      R L+ FV  L ++ 
Sbjct: 172 GEVYMKRAAFAEVNERQELLGLKPFANPRNCAAGTLRQLDSRITKERRLSMFVFNLQRSD 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   E    M+  G       R   T   + +   E+   R +LPYDIDG V KV+
Sbjct: 232 GRVFSSHTEAYVFMQSQGIKTIANYRVCRTAEEVWAAIEEIGVRRGSLPYDIDGAVVKVN 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            F+++++LG  A++PRW I++K+  ++  T L DI++ +GRTG +TP A  +PV + G  
Sbjct: 292 SFAMREELGVTAKAPRWAIAYKYPPEEKETVLRDIELSVGRTGRITPTAVFDPVGLCGTR 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHN+DYI  L           DIR+GD +LV ++GE+IP+V  ++ ++R  +++P
Sbjct: 352 VERATLHNQDYIDSL-----------DIRIGDTILVYKSGEIIPRVKAVLKDKRPQNSRP 400

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P  CP+C +  VR+ +       A  RC   + C AQ    L +FVSR A +I+GLG
Sbjct: 401 YVIPDVCPVCGAHAVREAD------TADMRCQNPV-CPAQIENHLLNFVSRSAMDIKGLG 453

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
              +         A  I   A+IF+L   ++               SV     +I   + 
Sbjct: 454 AAAVIALVH----AGYIHDVAEIFSLHEHREELVASGLI---GRAKSVDQRLAAIEASKQ 506

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              ER +  LGI  +G   A +L + + S     +          +    ++ VP +G+I
Sbjct: 507 NPPERLLTGLGIAGIGRAAAAALMQEFSSIDALQEA-------ARESPERILAVPDMGEI 559

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
             Q + EF+ +      ++ L        G   + V + +  K  V TGTL  + R +  
Sbjct: 560 TVQKLTEFFSSASACALLDRLRAAGVNFAGTRTERVGTALAGKSFVITGTLPTLSREECS 619

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
             +T  G +V   +S+KTD ++ G+  GSKL+KA+ LG+ +++E     ++ +    L
Sbjct: 620 ALITAHGGLVKGSVSKKTDYLVAGEAAGSKLKKAEDLGIPVLDEAALRAMISEEKDGL 677


>gi|240122918|ref|ZP_04735874.1| putative DNA ligase [Neisseria gonorrhoeae PID332]
          Length = 823

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 250/841 (29%), Positives = 380/841 (45%), Gaps = 163/841 (19%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  +
Sbjct: 62  VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187
            +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L     PE+IEV
Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246
           RGEV + K DF  LN      G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 179 RGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 238

Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304
                A+   + L   + LGF + NG        G V  + E    +    PY+IDG V 
Sbjct: 239 QGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVV 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452
                                            +P+  P+ CPIC+S + R+        
Sbjct: 408 ETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPTRCPICRSEIEREEGE----- 462

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DIF 511
            A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +       +   DI 
Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLYRIDIP 521

Query: 512 TLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           TLQ+ ++T                    S    +N          N+   I   +   L 
Sbjct: 522 TLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPELA 581

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----------------- 594
           RF+F+LGIRHVG   A++LA+ + + +   +    ++A   D                  
Sbjct: 582 RFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQ 641

Query: 595 ---WLSLIR--------------------------VPL--VGDIIAQAIVE--------- 614
                 L+                           +P   + +  AQA+ E         
Sbjct: 642 QAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSIEGL 701

Query: 615 ------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGT 657
                       +    +N   +E L    +      E    S      +  K  V TGT
Sbjct: 702 QNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGT 761

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L L
Sbjct: 762 LPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTL 821

Query: 718 L 718
           L
Sbjct: 822 L 822


>gi|194097948|ref|YP_002000994.1| putative DNA ligase [Neisseria gonorrhoeae NCCP11945]
 gi|239998421|ref|ZP_04718345.1| putative DNA ligase [Neisseria gonorrhoeae 35/02]
 gi|254781380|sp|B4RJQ9|DNLJ_NEIG2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193933238|gb|ACF29062.1| putative DNA ligase [Neisseria gonorrhoeae NCCP11945]
 gi|317163707|gb|ADV07248.1| putative DNA ligase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 823

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 250/841 (29%), Positives = 381/841 (45%), Gaps = 163/841 (19%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  +
Sbjct: 62  VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187
            +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L     PE+IEV
Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVPELIEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246
           RGEV + K DF  LN      G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 179 RGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 238

Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304
                A+   + L   + LGF + NG        G V  + E    +    PY+IDG+V 
Sbjct: 239 QGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEIDGMVV 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452
                                            +P+  P+ CPIC+S + R+        
Sbjct: 408 ETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE----- 462

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DIF 511
            A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +       +   DI 
Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLYRIDIP 521

Query: 512 TLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           TLQ+ ++T                    S    +N          N+   I   +   L 
Sbjct: 522 TLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPELA 581

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----------------- 594
           RF+F+LGIRHVG   A++LA+ + + +   +    ++A   D                  
Sbjct: 582 RFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQ 641

Query: 595 ---WLSLIR--------------------------VPL--VGDIIAQAIVE--------- 614
                 L+                           +P   + +  AQA+ E         
Sbjct: 642 QAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSIEGL 701

Query: 615 ------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGT 657
                       +    +N   +E L    +      E    S      +  K  V TGT
Sbjct: 702 QNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGT 761

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L L
Sbjct: 762 LPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTL 821

Query: 718 L 718
           L
Sbjct: 822 L 822


>gi|240015985|ref|ZP_04722525.1| putative DNA ligase [Neisseria gonorrhoeae FA6140]
 gi|240112339|ref|ZP_04726829.1| putative DNA ligase [Neisseria gonorrhoeae MS11]
          Length = 823

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 250/841 (29%), Positives = 381/841 (45%), Gaps = 163/841 (19%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  +
Sbjct: 62  VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187
            +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L     PE+IEV
Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246
           RGEV + K DF  LN      G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 179 RGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 238

Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304
                A+   + L   + LGF + NG        G V  + E    +    PY+IDG+V 
Sbjct: 239 QGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEIDGMVV 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452
                                            +P+  P+ CPIC+S + R+        
Sbjct: 408 ETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE----- 462

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DIF 511
            A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +       +   DI 
Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLYRIDIP 521

Query: 512 TLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           TLQ+ ++T                    S    +N          N+   I   +   L 
Sbjct: 522 TLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPELA 581

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----------------- 594
           RF+F+LGIRHVG   A++LA+ + + +   +    ++A   D                  
Sbjct: 582 RFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQ 641

Query: 595 ---WLSLIR--------------------------VPL--VGDIIAQAIVE--------- 614
                 L+                           +P   + +  AQA+ E         
Sbjct: 642 QAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSIEGL 701

Query: 615 ------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGT 657
                       +    +N   +E L    +      E    S      +  K  V TGT
Sbjct: 702 QNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGT 761

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L L
Sbjct: 762 LPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTL 821

Query: 718 L 718
           L
Sbjct: 822 L 822


>gi|205372454|ref|ZP_03225267.1| NAD-dependent DNA ligase LigA [Bacillus coahuilensis m4-4]
          Length = 635

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 239/679 (35%), Positives = 358/679 (52%), Gaps = 53/679 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A + +  L Q ++  +  YY   KP + D EYD+  +   AI   FP+L     P
Sbjct: 1   MERQFAEERVKELHQTLNEWNYAYYVLDKPQVSDQEYDSKLQELIAIEQEFPELK---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IG ++     KV H IP LSL   +N EDL+ F  +I         ++  +  E
Sbjct: 58  DSPSERIGAQVLEGFTKVQHDIPMLSLGNAFNEEDLKDFDRKIRERVG----DNFAYVCE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I+++YE G FV  A RGDG  GED++A +R I +IP  L   +   IEVRGE 
Sbjct: 114 LKIDGLAISLKYEDGLFVQGATRGDGTIGEDITANLRTIRSIPLRLKDAV--TIEVRGEA 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           ++ K  F++LN+     G +P+ANPRNAA+G LR+L+P    +R L+ F++ +    E+ 
Sbjct: 172 FMPKRSFVSLNEAKDEAGEEPFANPRNAAAGSLRQLDPKIAASRNLDIFLYSIANGEEVG 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                + L  +  LGF  N   RQ  T   ++ Y  E    R  L Y+IDG+V KV+ FS
Sbjct: 232 MTEHAKALAYLDSLGFKTNPLRRQCETIEEVMMYVEEWTEKRQDLAYEIDGIVIKVNSFS 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  A+SPRW I++KF  ++  T L DI++ +GRTG +TP A LEPV + G  +  
Sbjct: 292 QQDELGFTAKSPRWAIAYKFPAEEVITVLKDIELSVGRTGAVTPTAILEPVRVAGTTVQR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHNED I+            +DIR+GD V+VK+AG++IP+VV  +   R  + + F  
Sbjct: 352 ASLHNEDLIR-----------EKDIRIGDHVIVKKAGDIIPEVVSSLKERRTGEEKEFFM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP C S ++R  +        A RC     C A   E L HFVSR A NI+GLG++ 
Sbjct: 401 PSHCPECDSELIRIEDE------VALRCMNPK-CPALIRESLIHFVSRTAMNIDGLGEKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   FK E     I+  ADI+ L + Q  +      +   G+ S  NL  +I+  R  SL
Sbjct: 454 ISQLFKEE----LIQDVADIYFLTQEQLIA------LERIGEKSALNLIQAIDASRENSL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIRHVGA+ A++LA+ + +  N                  LIR+  +GD +A 
Sbjct: 504 EKLLFGLGIRHVGAKAAKTLAQEFDTLTNLQNASK----------EELIRIDEIGDKMAD 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-----SSEIENKKLVFTGTLQKIQRHK 665
           +IV+++  P     +  L K       +  K +      +    K +V TG L  + R++
Sbjct: 554 SIVQYFSMPEVHELIAELQKAEVNMQYKGPKKIAVEAGETSFAGKVVVLTGKLSILTRNE 613

Query: 666 AQEYVTQLGAVVSAILSRK 684
           A+E +  LG  V+  +S+K
Sbjct: 614 AKEKIELLGGKVTGSVSKK 632


>gi|15676564|ref|NP_273708.1| DNA ligase [Neisseria meningitidis MC58]
 gi|161869603|ref|YP_001598770.1| DNA ligase [Neisseria meningitidis 053442]
 gi|304388085|ref|ZP_07370214.1| NAD-dependent DNA ligase LigA [Neisseria meningitidis ATCC 13091]
 gi|81784869|sp|Q9K0E3|DNLJ_NEIMB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359266|sp|A9M2U7|DNLJ_NEIM0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|7225892|gb|AAF41084.1| DNA ligase [Neisseria meningitidis MC58]
 gi|161595156|gb|ABX72816.1| DNA ligase [Neisseria meningitidis 053442]
 gi|304337942|gb|EFM04082.1| NAD-dependent DNA ligase LigA [Neisseria meningitidis ATCC 13091]
 gi|316983632|gb|EFV62613.1| DNA ligase, NAD-dependent [Neisseria meningitidis H44/76]
 gi|325139885|gb|EGC62416.1| DNA ligase, NAD-dependent [Neisseria meningitidis CU385]
 gi|325200648|gb|ADY96103.1| DNA ligase, NAD-dependent [Neisseria meningitidis H44/76]
          Length = 841

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 248/842 (29%), Positives = 381/842 (45%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHICRLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  I+ +  IP  L     PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           VRGEV + K DF+ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMLKADFVALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303
             +   A+   + L   + LGF + NG          V  + E    +    PY+IDG+V
Sbjct: 260 QQDGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550
            L         +  +                               N+   I   +   L
Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---------------- 594
            RF+F+LGIRHVG   A++LA+ + + +   +    ++A   D                 
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658

Query: 595 ----WLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614
                  L+                           +P   + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQTDKALPTDWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|325127826|gb|EGC50734.1| DNA ligase, NAD-dependent [Neisseria meningitidis N1568]
          Length = 841

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 245/842 (29%), Positives = 379/842 (45%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      ++ H +P LSL   ++ +         ++  F  R+       D     
Sbjct: 83  RVGGEPLAGFAEIRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186
           + +EPK DG  I++ Y  G  + AA RGDG +GEDV+  ++ +  IP  L     PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLIQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303
             +   A+   + L   + LGF + NG          V  + E    +    PY+IDG+V
Sbjct: 260 QQDGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550
            L         +  +                               N+   I   +   L
Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---------------- 594
            RF+F+LGIRHVG   A++LA+ + + +   +    ++A   D                 
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658

Query: 595 ----WLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614
                  L+                           +P   + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQTDKALPTDWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|240080125|ref|ZP_04724668.1| putative DNA ligase [Neisseria gonorrhoeae FA19]
 gi|240117363|ref|ZP_04731425.1| putative DNA ligase [Neisseria gonorrhoeae PID1]
 gi|260441105|ref|ZP_05794921.1| putative DNA ligase [Neisseria gonorrhoeae DGI2]
          Length = 823

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 250/841 (29%), Positives = 380/841 (45%), Gaps = 163/841 (19%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  +
Sbjct: 62  VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187
            +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L     PE+IEV
Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246
           RGEV + K DF  LN      G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 179 RGEVLMLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 238

Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304
                A+   + L   + LGF + NG        G V  + E    +    PY+IDG V 
Sbjct: 239 QGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVV 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452
                                            +P+  P+ CPIC+S + R+        
Sbjct: 408 ETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE----- 462

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DIF 511
            A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +       +   DI 
Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLYRIDIP 521

Query: 512 TLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           TLQ+ ++T                    S    +N          N+   I   +   L 
Sbjct: 522 TLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPELA 581

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----------------- 594
           RF+F+LGIRHVG   A++LA+ + + +   +    ++A   D                  
Sbjct: 582 RFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQ 641

Query: 595 ---WLSLIR--------------------------VPL--VGDIIAQAIVE--------- 614
                 L+                           +P   + +  AQA+ E         
Sbjct: 642 QAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSIEGL 701

Query: 615 ------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGT 657
                       +    +N   +E L    +      E    S      +  K  V TGT
Sbjct: 702 QNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGT 761

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L L
Sbjct: 762 LPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTL 821

Query: 718 L 718
           L
Sbjct: 822 L 822


>gi|325203753|gb|ADY99206.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240355]
          Length = 841

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 246/842 (29%), Positives = 378/842 (44%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L     PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           VRGEV + K DF  LN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFATLNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303
                 A+   + L   + LGF + NG          V  + E    +    PY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQELGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550
            L         +  +                               N+   I   +   L
Sbjct: 539 RLDIPTLQKMKEAADKTVAESDQMPSEGSSVGASGKHKKQPTKWAENILAGIESGKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---------------- 594
            RF+F+LGIRHVG   A++LA+ + + +   +    ++A   D                 
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658

Query: 595 ----WLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614
                  L+                           +P   + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQAQAVSLPAAQYAEPQRWIARLPGFKISENKAQALWELAGKSIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQTDKSLPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|254517673|ref|ZP_05129729.1| NAD-dependent DNA ligase LigA [Clostridium sp. 7_2_43FAA]
 gi|226911422|gb|EEH96623.1| NAD-dependent DNA ligase LigA [Clostridium sp. 7_2_43FAA]
          Length = 663

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 203/712 (28%), Positives = 356/712 (50%), Gaps = 57/712 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++ +  L  E++ +   YY    P + D +YD        +            P  P 
Sbjct: 2   DKKQRIEELVNELNRYAYEYYSLDNPSVSDKDYDKKYDELKKLEEE----TNYVLPYSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-----KDDNSIFFTL 130
            ++G  +     K TH     SL+K  ++E+L+ +  R  +F ++     +D     + L
Sbjct: 58  LRVGDRVLEGFNKYTHKARLWSLDKAQSLEELKDWHNRNLKFIREMNSRGEDLPEPRYVL 117

Query: 131 EPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
             K DG  + + Y E G    AA RG+G  GE+VSA ++ I +IP  L +N  ++ E+ G
Sbjct: 118 TKKFDGLTVNLTYDENGILASAATRGNGEVGEEVSAQVKTIKSIP--LKINNDDLFEIHG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSE 248
           E  ++   F   N         P  N RN A+G LR LN  +   R L+ F + +G    
Sbjct: 176 EAIMTTEAFENYNKNA----DVPLKNLRNGAAGALRNLNLKETAKRNLSAFFYDVGYKEG 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K   EML  ++  G P+++ +R   T   I    + ++ IR  L YDIDG+V  +D+
Sbjct: 232 EGFKTYEEMLNFIKDKGLPMDDYIRYCTTIEEIEKEIDYIREIRFDLNYDIDGVVIAIDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              ++ +G   + P+W I++KF  ++A+T+L+D++  +GR+G + P A L+P+++ G  +
Sbjct: 292 IRTRELMGYTVKFPKWAIAYKFEAQEATTKLVDVEWNVGRSGRVGPTAILDPIDLAGVTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATL+N D I+            + +R+G  V V+R+ +VIP+++ ++           
Sbjct: 352 KRATLNNIDDIRR-----------KGVRIGAEVFVRRSNDVIPEIMGVVTESLEGTE-EI 399

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           + P  CP C + +V++           + C   L+C  Q ++ + H+ SRDA NIEG  +
Sbjct: 400 NVPEVCPACGAHLVQN--------GVHYFCENTLSCKPQMVKTIVHYASRDAMNIEGFSE 451

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +  +  F+  D    I+  AD++ LQ+       ++  +  FG     NL D++ K ++ 
Sbjct: 452 KTAEQLFEKLD----IKSIADLYKLQKE------ELLQLDKFGPKKAQNLLDAVEKSKDC 501

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L RFI+SLGI +VG + A+ L   + S +                +  L+ V  VG I+
Sbjct: 502 ELYRFIYSLGIPNVGVKTAKDLVNKFKSLEGLKSA----------SFDDLVSVQDVGGIV 551

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+ ++EF++  + +  +  LL+         ++ +SS  E K +V TGTLQ   R + + 
Sbjct: 552 AKCVLEFFKEEKAVNTINELLELGVNPKFEEKQIISSPFEGKTVVVTGTLQNYSRGEIKA 611

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  LGA VS  +S+KTD +I G+  GSKL+KA +LGVK++NE++F  ++++
Sbjct: 612 KLELLGAKVSGSVSKKTDFVIAGEEAGSKLDKAIELGVKVLNEDEFEDIIKE 663


>gi|283850424|ref|ZP_06367713.1| DNA ligase, NAD-dependent [Desulfovibrio sp. FW1012B]
 gi|283574450|gb|EFC22421.1| DNA ligase, NAD-dependent [Desulfovibrio sp. FW1012B]
          Length = 697

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 244/723 (33%), Positives = 365/723 (50%), Gaps = 57/723 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S    R  L++L   I +H+  YY    P I D+ YDAL R    +  A P+LA   DPN
Sbjct: 4   SDSDPRARLAALRDLIHFHNHRYYVLDDPQIEDAAYDALYRELVTLEAAHPELA---DPN 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-SIFFTLE 131
            P  ++GG +  S     H +   SL+   +  + + F+TR      ++D      F ++
Sbjct: 61  SPTRRVGGAVLPSFDSKAHGLRMYSLDNAMSETEWQDFLTRAANKLDREDVAFERTFWVD 120

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-------RVLSLNIPEI 184
           PK DG  + I YEKG +  A  RGDG  GEDV+  +R +  +P       R   L +PE+
Sbjct: 121 PKFDGLALEILYEKGVYAGALTRGDGVRGEDVTENVRTVRNVPLDLRPHARQAGLPVPEL 180

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL 243
           +EVRGEV +++  F  LN+     G K +ANPRNAA+G +R+L+     +R L FF +GL
Sbjct: 181 LEVRGEVVMTRQAFFELNERQREQGGKIFANPRNAAAGSVRQLDSRISASRPLTFFAYGL 240

Query: 244 GKTSE----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           G+               ++  +R LG PV +  R      G+  Y+  +   R  LP++I
Sbjct: 241 GRQDWGEAASPWTTHSGVMAGLRSLGLPVASEGRMVEA-EGVYPYFQALGLRRQELPFEI 299

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KVD   LQ+ LG   R+PR+ ++ KF   +A T L  ID+Q+GRTG+LTPVA LE
Sbjct: 300 DGVVAKVDSLPLQEALGFTDRAPRFALALKFPAHEAETVLRQIDVQVGRTGVLTPVALLE 359

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV++ G  +  ATLHNED IK            +D+R GD V+V+RAG+VIP+VV +++ 
Sbjct: 360 PVSLAGVTVARATLHNEDEIK-----------AKDLREGDTVVVRRAGDVIPEVVKVVLE 408

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  DA  F FP  CP C S  VRD         AA RC   LAC A     + +FVS+ 
Sbjct: 409 KRPADAAAFEFPHTCPACGSPAVRDEG------AAAWRCVN-LACPAMLRRGIAYFVSKA 461

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
             +IEGLG++ ++           ++ PAD+F+L         ++  +      S +N  
Sbjct: 462 GLDIEGLGQKWVETLIAK----GMVKTPADLFSLTEA------ELLFLDRMAAKSASNFV 511

Query: 540 DSINKRRNISL-ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            ++   R  +  ++ I +LGIR VG   AR+LA ++      A      +          
Sbjct: 512 AAVEAARQKATLQKLIAALGIRQVGTRTARTLADHFRDLDALAAATAEELTAL------- 564

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGT 657
              P +G  +A +I EF+ N  N   V          +        ++ +  K+ +FTG 
Sbjct: 565 ---PDIGPEVAASIREFFDNEANRQLVARFKDLGLWPVSEPKPIASAAPLAGKRFLFTGA 621

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L  + R  AQ  V   G  + + +S+K D ++ G +PGSKL KAQ LGV ++  E+F  L
Sbjct: 622 LPDMTREAAQALVEAAGGRIVSSVSKKLDYLVAGTDPGSKLAKAQALGVTVLTPEEFSSL 681

Query: 718 LQQ 720
           L +
Sbjct: 682 LAE 684


>gi|304405678|ref|ZP_07387337.1| DNA ligase, NAD-dependent [Paenibacillus curdlanolyticus YK9]
 gi|304345717|gb|EFM11552.1| DNA ligase, NAD-dependent [Paenibacillus curdlanolyticus YK9]
          Length = 689

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 199/735 (27%), Positives = 335/735 (45%), Gaps = 73/735 (9%)

Query: 10  EALSIEQAR--------KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
             L+ ++A         + +  L  EI  H   YY   +P I D+E+D L     A+   
Sbjct: 3   SRLNEQEAAIAANPQQLERMRKLADEIERHSYSYYTLDRPTISDAEFDKLYDELVALEKT 62

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ-- 119
                     + P  ++G E+     +  H     SL+K  N+EDLR +  R+ +     
Sbjct: 63  ----IGIVLEHSPTQRVGNELLKGFDQHRHRARLWSLDKAQNVEDLRAWNQRVQKGINDW 118

Query: 120 ------KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI 173
                 +       + LE K DG  + + YE G+ + AA RG+G  GE + A ++ I ++
Sbjct: 119 NSKHPDETPLPEPSYVLELKYDGLTLNLTYENGRLIQAATRGNGVVGEGILAQVKTIRSV 178

Query: 174 PRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DI 232
           P  +      I+EV+GE  ++ +   A N        +P  N RNAA+G LR  NP    
Sbjct: 179 PLTIP-FRDGIVEVQGEGIMNLSVLEAYNQTA----EEPLKNARNAAAGALRNQNPKITA 233

Query: 233 TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR 292
            R LN F + +G    +  K   ++ Q +    F VN  V   ++   +      +  +R
Sbjct: 234 ERKLNAFFYNIGHAEGVSFKTHQQLQQFLIENKFKVNPYVTYHDSMESVEEELLRVTEMR 293

Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352
            TL Y IDG V K+ +   ++ LG   + PRW ++ KF  ++ +T L  +  ++GRTG +
Sbjct: 294 PTLDYLIDGAVVKLVDMRTREALGYTDKFPRWAVAFKFEAEETTTVLESVSWEVGRTGKI 353

Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412
           TPVAR+EPV + G  + N TL+N          G + R      +G RV ++R+ +VIP+
Sbjct: 354 TPVARVEPVELAGVTVQNCTLNNM---------GDIDRKNLKHALGTRVFIRRSNDVIPE 404

Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472
           ++    +    +      PS CP C + + +          A   C   L C  Q + R+
Sbjct: 405 ILGKADD---EEGTEIEVPSACPSCGTALEQR--------GAHLFCNNKLGCKPQMIGRI 453

Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGD 532
            HF SRDA +IE       +  ++       +R PAD++TL             +  FG+
Sbjct: 454 THFASRDAMDIETFSVMTAEQLYEECG----VRDPADLYTLGYDDLIK------LERFGE 503

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
                L ++  K ++  L  F+F+LGI + G    + LA ++ S     Q          
Sbjct: 504 RKAQKLIEAFEKSKSRDLAAFLFALGIPNTGKATTKVLADHFGSLDAVLQATE------- 556

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR------HEKNVSSE 646
                L+++P +G I+A +IV F+ +P    ++  + ++   +           + V + 
Sbjct: 557 ---EQLVQLPDIGGIVADSIVSFFADPLMQASISKMREQGVRAEAEIRRVPSAIEGVDNV 613

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
              K +V TGTL  + R +A + +  LGA V+  +S+KTD +I G++ GSKL KAQ LG+
Sbjct: 614 FTGKTVVLTGTLSTMTRDEAAKKLEALGAKVTGSVSKKTDFVIAGESAGSKLTKAQSLGI 673

Query: 707 KIM-NEEQFLFLLQQ 720
            ++ +E  F  +L +
Sbjct: 674 AVIEDEALFKQMLGE 688


>gi|332665881|ref|YP_004448669.1| DNA ligase [Haliscomenobacter hydrossis DSM 1100]
 gi|332334695|gb|AEE51796.1| DNA ligase [Haliscomenobacter hydrossis DSM 1100]
          Length = 711

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 221/719 (30%), Positives = 363/719 (50%), Gaps = 54/719 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            ++ + L   I YH+  YY  + P++ D EYD L +  + +    P+L      + P  +
Sbjct: 30  AQQHAELCGLIIYHEWRYYIQNDPVLSDYEYDQLFKLLERLEEVHPELV---SADSPSQR 86

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +  ++     +V H IP LSL   +N EDL  +   I RF     D  + + +EPK DG 
Sbjct: 87  VSADLTEDFSQVEHLIPMLSLANSYNAEDLNDWDASIKRFLNIDPDTDLDYGVEPKFDGG 146

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISK 195
            I + YE    V AA RG+G  GE+++   + I +IP     +      +E+RGEV I K
Sbjct: 147 SIALVYENDVLVRAATRGNGIIGEEITNNAKVIRSIPLRAEFSKYGIHRVELRGEVLIRK 206

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--------TRYLNFFVHGLGKTS 247
           + F  +N +  A G   +AN RN A+G LR  +P ++           L +     G   
Sbjct: 207 DIFEKMNAKRAAEGITLFANARNTATGGLRIKDPKEVAKRGLEAFIYTLGYATDQAGNNM 266

Query: 248 EIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                   E L+ +  LGF V     +       ++ + N  +  R    Y+IDG+V KV
Sbjct: 267 LNQFATHLESLELLEKLGFKVPVQERKLCKNIQEVIDFCNYWQQQRDGYAYEIDGMVAKV 326

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +   LQ++ G  +  PRW I+ KF  KQA+++LL+++ Q+G+ G +TPVA+LEPV + G 
Sbjct: 327 NSRELQERSGFTSHHPRWAIAFKFQAKQATSKLLNVEYQVGKIGSITPVAKLEPVQLAGV 386

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +++ +LHNED+I             RD+R+GD VLV+RAG+VIP +V  +   R     
Sbjct: 387 TVSSVSLHNEDFITS-----------RDLRLGDTVLVERAGDVIPYIVKAMDELRDGSEV 435

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP FCPI  +    +L  +  +  AA RC   +         + H  S+DA +I+G+
Sbjct: 436 PIVFPQFCPINDTDTPVELLREGEE--AAWRCPNCVCGQQDLQRIIFHV-SKDAMDIDGM 492

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           GKQ ++ FF+       +R  AD++ L        T++  + GFG+ S T L  +I K +
Sbjct: 493 GKQIVERFFE----LGWVRNFADVYNL------DFTQVAQLEGFGEKSATKLQAAIEKAK 542

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              + R ++SL I H+G ++++ LA           EIN+++   +       ++  VG 
Sbjct: 543 KNPISRVLYSLSIHHLGKKVSKLLA----------AEINHVLDLKDWQIEDYTKIKDVGP 592

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSP-----SIGRHEKNVSSEIENKKLVFTGTLQKI 661
           ++A   +EF+QN  NI  ++ +                  +  + +  K ++FTG+L K+
Sbjct: 593 VVAANAIEFFQNELNIELIQQMEALGVNLHQTEEDKPKAASADAPLAGKTILFTGSLAKM 652

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719
            R +AQE     GA   + +S+  DI++VG+  GSKL+KA++LG V I+ E++FL +L+
Sbjct: 653 GRKEAQEKAEAAGAKNISAVSKNLDILVVGEEAGSKLKKARELGTVMILTEDEFLAMLE 711


>gi|168211265|ref|ZP_02636890.1| DNA ligase, NAD-dependent [Clostridium perfringens B str. ATCC
           3626]
 gi|170710700|gb|EDT22882.1| DNA ligase, NAD-dependent [Clostridium perfringens B str. ATCC
           3626]
          Length = 662

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 209/711 (29%), Positives = 353/711 (49%), Gaps = 58/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +K +  L +E++ +   YY      + D +YD        +          + P  P 
Sbjct: 2   DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIFFT 129
            ++G  +     K TH     SL+K   +E++R++  R  +F ++      ++   + + 
Sbjct: 58  QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKYI 117

Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+ 
Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247
           GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G   
Sbjct: 176 GEAIMTTEAFEKYNSEA----DTPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +D
Sbjct: 232 GAPFKTYMEMLNFIKTKGFPMDDYIRKCTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G  
Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATL+N D I             + +R+G  V V+R+ +VIP+++ ++        + 
Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C + +V +             C   L C  Q ++ + HF  R+A NI G  
Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++  +  F+  D    IR  +D++ L+        K+ ++  FG     NL D+I K ++
Sbjct: 452 EKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKSKD 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VGDI
Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++I+EF++  R +  +  LL          ++ + S    K +V TGTL+   R   +
Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F  ++
Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662


>gi|332638905|ref|ZP_08417768.1| NAD-dependent DNA ligase [Weissella cibaria KACC 11862]
          Length = 678

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/716 (31%), Positives = 369/716 (51%), Gaps = 52/716 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
              I  +++ +A+ E+ +L+Q++      YY+   P + D+ YD    R +A+  A+P+L
Sbjct: 4   FQDIATMTVIEAKAEIDALQQDLKQWAQEYYENDAPSVEDAVYDREYNRLEALEAAYPEL 63

Query: 66  ARSEDPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
                P+    ++GG+     L KV H IP LSL  ++++++L  ++    + +    + 
Sbjct: 64  V---TPDSITQQVGGKATKSDLPKVVHDIPMLSLGDVFSLDELYDWLATTQKSF----NT 116

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + +  E KIDG  I++ YE G+ + A+ RGDG+ GEDV+A +R I  IP+ L+  I   
Sbjct: 117 PLSYNAELKIDGLAISLVYENGELIQASTRGDGNIGEDVTANVRQIKRIPKQLNEPIS-- 174

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVHG 242
           +EVRGEVY+ K  F+ LN++    G   +ANPRNAA+G LR+L+     +     F    
Sbjct: 175 VEVRGEVYMPKAAFVTLNEQRERDGLSTFANPRNAAAGSLRQLDVKVTKQRQLDAFLYAA 234

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +   + +    Q ++LQ++  LG P N       +   I +Y N+  + R  L Y IDG+
Sbjct: 235 VDAENTLGVTTQADLLQRLAELGLPANPTNAVVASEADIAAYINDETATRDELAYGIDGI 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV+  +  ++LG   + PRW I++KF  ++A T + DI+  +GRTG +TP A ++PV 
Sbjct: 295 VIKVNSLAYHEELGNTVKVPRWAIAYKFPPEEAHTVVRDIEWTVGRTGAVTPTAVMDPVQ 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +  A+LHN DY+             +DIR+GD V + +AG++IP++  +I+++R 
Sbjct: 355 LAGTTVARASLHNPDYL-----------NSKDIRIGDTVTLHKAGDIIPEIGQVILSQRP 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D++ +  P  CP C   +V            A RC     C AQ  E L HF SRDA N
Sbjct: 404 TDSEVYQMPLGCPACGQELVHIDGE------VALRCINPF-CPAQVQESLTHFASRDAMN 456

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GLG + +            I   +D++ L   Q  +      +  FG+ S  NL  +I
Sbjct: 457 IDGLGPKIVGQLLSRN----MISQVSDLYRLTFEQLLT------LDKFGETSANNLLRAI 506

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              +  S+ER +F LGIR+VGA+ A+++A  +++    A                +  +P
Sbjct: 507 ENSKQNSVERLLFGLGIRNVGAKAAKTIAAKFVTLDAIAHA----------SADDIAELP 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQK 660
            +G II  +I +++        V    +    +      E    +   +KK+V TG L  
Sbjct: 557 GMGLIIGHSIAQYFDTEHAQELVADFEQLGVNTRYTQAVEIATDTVFSDKKVVLTGKLAL 616

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
             R +A  ++   GA VS  +S+KTD++I G + GSKL KAQ+LG++I +E Q   
Sbjct: 617 FSRSEATAWLESQGATVSGSVSKKTDLLIAGADAGSKLTKAQELGIEIWSEAQLRD 672


>gi|29840375|ref|NP_829481.1| NAD-dependent DNA ligase LigA [Chlamydophila caviae GPIC]
 gi|75539575|sp|Q822R2|DNLJ_CHLCV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|29834724|gb|AAP05359.1| DNA ligase [Chlamydophila caviae GPIC]
          Length = 662

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 234/701 (33%), Positives = 373/701 (53%), Gaps = 48/701 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R++  SL +E+   D CYY     +I D +YD   ++  AI    P+         P  +
Sbjct: 7   REQYLSLCKELEKDDYCYYVLHNAVISDYDYDMKMQKLLAIEAQHPEWKVLW---SPSMR 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  ++ +   V HS P LS+   + +E+L  F +R+ +        +  +TLE KIDG 
Sbjct: 64  LGDRVSGNFPVVAHSHPMLSIANAYTLEELNDFFSRVEKTLG----YAPIYTLELKIDGI 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + IRYE+G  V A  RG+G  GED++A IR I ++P  L  + PE +EVRGEV+  +  
Sbjct: 120 AVAIRYEQGILVQALSRGNGQKGEDITANIRTIRSLPLRLPKDAPEFLEVRGEVFFKRET 179

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N       +  +ANPRNAA G L+ L+  +     N  +   G  S+   +  Y+ 
Sbjct: 180 FEQINAAQRQAEKPEFANPRNAAGGTLKLLSAKEA-AQRNLELSVYGSLSDENTESHYDN 238

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L   +  GFP+    RQ  T   +V   +E++ +R  LP +IDG+V KVD+   QK LG 
Sbjct: 239 LMLCKRWGFPIFGQPRQCQTIAEVVKSLDEIEGLRDQLPMEIDGVVIKVDDVEAQKALGM 298

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+  RW +++K+A ++A T L +I IQ+GRTG+LTPVA+L PV + G+ ++ A+L+NE+
Sbjct: 299 TAKHYRWALAYKYAPERAETILENILIQVGRTGVLTPVAKLSPVFLSGSRVSRASLYNEE 358

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +DIR+GD V V++ GE+IPKVV + + +R    QP+  P FCP+C
Sbjct: 359 EIER-----------KDIRIGDTVYVEKGGEIIPKVVGVCLEKRPEGTQPWVMPEFCPVC 407

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
             +V R+ +        + RCT  L CSA  +E+++ FV R A +I+ LG++ +   F  
Sbjct: 408 HGKVTRESDK------VSVRCTNPL-CSAGAIEKIRFFVGRGALDIDHLGEKVITKLFD- 459

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I    DIF +             + GF D SV N+  SI K +   L+RFI +L
Sbjct: 460 ---LGVIHRCCDIFKITEEDL------LQVPGFKDKSVKNVLKSIEKAKQAPLDRFIAAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI +VG  +A +LA+++L+ +                   L  +  +GD +A++I  ++ 
Sbjct: 511 GIPYVGVRVASALAQHFLNLEAVMGA----------SLEELKSIEGIGDKVAESIEAYFN 560

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
               I  ++ +L      +  H +  SS    K  V TGTL+K+ R +A+  +   G  V
Sbjct: 561 QQDTIEEIQKMLSLGVNVLPYHRE--SSSCLGKTFVITGTLKKMTRSEAEASIRNCGGKV 618

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + +S+ TD ++VG++PGSK +KAQ+L + I+NE   L +L
Sbjct: 619 GSSVSKSTDYLVVGEDPGSKFKKAQELEIPILNENDLLKIL 659


>gi|240115079|ref|ZP_04729141.1| putative DNA ligase [Neisseria gonorrhoeae PID18]
 gi|240125172|ref|ZP_04738058.1| putative DNA ligase [Neisseria gonorrhoeae SK-92-679]
 gi|240127627|ref|ZP_04740288.1| putative DNA ligase [Neisseria gonorrhoeae SK-93-1035]
          Length = 823

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 251/841 (29%), Positives = 381/841 (45%), Gaps = 163/841 (19%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  +
Sbjct: 62  VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187
            +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L     PE+IEV
Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVPELIEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246
           RGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 179 RGEVLMLKADFAALNQRQTENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVARQ 238

Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304
              + A+   + L   + LGF + NG        G V  + E    +    PY+IDG V 
Sbjct: 239 QGGLIAEEHIQELAYFQALGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVV 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452
                                            +P+  P+ CPIC+S + R+        
Sbjct: 408 ETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE----- 462

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DIF 511
            A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +       +   DI 
Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLYRIDIP 521

Query: 512 TLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           TLQ+ ++T                    S    +N          N+   I   +   L 
Sbjct: 522 TLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPELA 581

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----------------- 594
           RF+F+LGIRHVG   A++LA+ + + +   +    ++A   D                  
Sbjct: 582 RFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQ 641

Query: 595 ---WLSLIR--------------------------VPL--VGDIIAQAIVE--------- 614
                 L+                           +P   + +  AQA+ E         
Sbjct: 642 QAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSIEGL 701

Query: 615 ------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGT 657
                       +    +N   +E L    +      E    S      +  K  V TGT
Sbjct: 702 QNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGT 761

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L L
Sbjct: 762 LPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTL 821

Query: 718 L 718
           L
Sbjct: 822 L 822


>gi|89256066|ref|YP_513428.1| DNA ligase [Francisella tularensis subsp. holarctica LVS]
 gi|167009870|ref|ZP_02274801.1| DNA ligase [Francisella tularensis subsp. holarctica FSC200]
 gi|254367402|ref|ZP_04983428.1| DNA ligase [Francisella tularensis subsp. holarctica 257]
 gi|123401612|sp|Q2A4C4|DNLJ_FRATH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|89143897|emb|CAJ79115.1| DNA ligase [Francisella tularensis subsp. holarctica LVS]
 gi|134253218|gb|EBA52312.1| DNA ligase [Francisella tularensis subsp. holarctica 257]
          Length = 678

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 255/713 (35%), Positives = 391/713 (54%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  + +  +  L   +S     Y+   KPII DS+YD L R    + +  P        
Sbjct: 14  LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N  L+++GGE+      + H     SL  ++++E+LR F  +I           I    E
Sbjct: 71  NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P    + N PE +EVRGE
Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--S 247
           + + K  FL+LN+ M     K +ANPRNAA+G +R L+      R L  + +G+G     
Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            ++ + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGLV+KV+
Sbjct: 243 FVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ  +G  AR P+W I++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG +
Sbjct: 303 NIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV  +   R  DAQ 
Sbjct: 363 VSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQI 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP+C S++      +     A +RCTGG  C AQ  ERLKHFVSR A +I+ LG
Sbjct: 412 VEMPTNCPVCDSKI------ENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++        A  I+ PADI+ L   Q T       +      S  N+ DSI K + 
Sbjct: 466 AKLIEQLV----AANLIKYPADIYKLNFEQLTG------LERMAAKSSQNVLDSITKSKE 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFIF++GI+ +G   + +LA ++ S ++F              +  LI +  +G+I
Sbjct: 516 PSLARFIFAIGIKDIGEVSSDALANHFGSLESFRDA----------KFEELIEINYIGEI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           IA  IV F+ +  NI  VE  L       +  + E   +     K +V TG+ +   R +
Sbjct: 566 IANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+    LL
Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678


>gi|240013546|ref|ZP_04720459.1| putative DNA ligase [Neisseria gonorrhoeae DGI18]
 gi|240120618|ref|ZP_04733580.1| putative DNA ligase [Neisseria gonorrhoeae PID24-1]
          Length = 823

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 251/841 (29%), Positives = 381/841 (45%), Gaps = 163/841 (19%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  +
Sbjct: 62  VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187
            +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L     PE+IEV
Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246
           RGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 179 RGEVLMLKADFAALNQRQTENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVARQ 238

Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304
              + A+   + L   + LGF + NG        G V  + E    +    PY+IDG V 
Sbjct: 239 QGGLIAEEHIQELAYFQALGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVV 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452
                                            +P+  P+ CPIC+S + R+        
Sbjct: 408 ETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE----- 462

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DIF 511
            A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +       +   DI 
Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLYRIDIP 521

Query: 512 TLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           TLQ+ ++T                    S    +N          N+   I   +   L 
Sbjct: 522 TLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPELA 581

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----------------- 594
           RF+F+LGIRHVG   A++LA+ + + +   +    ++A   D                  
Sbjct: 582 RFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQ 641

Query: 595 ---WLSLIR--------------------------VPL--VGDIIAQAIVE--------- 614
                 L+                           +P   + +  AQA+ E         
Sbjct: 642 QAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSIEGL 701

Query: 615 ------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGT 657
                       +    +N   +E L    +      E    S      +  K  V TGT
Sbjct: 702 QNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGT 761

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L L
Sbjct: 762 LPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTL 821

Query: 718 L 718
           L
Sbjct: 822 L 822


>gi|166215590|sp|Q8XI62|DNLJ_CLOPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 662

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 209/711 (29%), Positives = 352/711 (49%), Gaps = 58/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +K +  L +E++ +   YY      + D +YD        +          + P  P 
Sbjct: 2   DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIFFT 129
            ++G  +     K TH     SL+K   +E++R++  R  +F ++      ++   + + 
Sbjct: 58  QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKYI 117

Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+ 
Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247
           GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G   
Sbjct: 176 GEAIMTTEAFEKYNSEA----ETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +D
Sbjct: 232 GAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   +  LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G  
Sbjct: 292 DIRTRDLLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATL+N D I             + +R+G  V V+R+ +VIP+++ ++        + 
Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C + +V +             C   L C  Q ++ + HF  R+A NI G  
Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++  +  F+  D    IR  +D++ L+        K+ ++  FG     NL D+I K ++
Sbjct: 452 EKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKSKD 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VGDI
Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++I+EF++  R +  +  LL          ++ + S    K +V TGTL+   R   +
Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F  ++
Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662


>gi|325197886|gb|ADY93342.1| DNA ligase, NAD-dependent [Neisseria meningitidis G2136]
          Length = 841

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 249/842 (29%), Positives = 380/842 (45%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHICRLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  I+ +  IP  L     PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303
                 A+   + L   + LGF + NG          V  + E    +    PY+IDG+V
Sbjct: 260 RQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTVVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 QETAVAVSDGIGHRQDDLFAEAPAANQTQSVPLYKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550
            L         +  +                               N+   I   +   L
Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPTKWAENILAGIESGKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---------------- 594
            RF+F+LGIRHVG   A++LA+ + + +   +    ++A   D                 
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658

Query: 595 ----WLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614
                  L+                           +P   + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQAQAVSLPAAQYAEPQRWIARLPGFKISENKAQALWELAGKSIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQTDKSLPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|156502078|ref|YP_001428143.1| DNA ligase [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|290954221|ref|ZP_06558842.1| DNA ligase [Francisella tularensis subsp. holarctica URFT1]
 gi|295312341|ref|ZP_06803126.1| DNA ligase [Francisella tularensis subsp. holarctica URFT1]
 gi|166214810|sp|A7NB34|DNLJ_FRATF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|156252681|gb|ABU61187.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 678

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 254/713 (35%), Positives = 391/713 (54%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  + +  +  L   +S     Y+   KPII DS+YD L R    + +  P        
Sbjct: 14  LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N  L+++GGE+      + H     SL  ++++E+LR F  +I           I    E
Sbjct: 71  NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P    + N PE +EVRGE
Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--S 247
           + + K  FL+LN+ M     K +ANPRNAA+G +R L+      R L  + +G+G     
Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            ++ + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGLV+K++
Sbjct: 243 FVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKIN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ  +G  AR P+W I++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG +
Sbjct: 303 NIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV  +   R  DAQ 
Sbjct: 363 VSNATLHNINEIKR-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQI 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP+C S++      +     A +RCTGG  C AQ  ERLKHFVSR A +I+ LG
Sbjct: 412 VEMPTNCPVCDSKI------ENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++        A  I+ PADI+ L   Q T       +      S  N+ DSI K + 
Sbjct: 466 AKLIEQLV----AANLIKYPADIYKLNFEQLTG------LERMAAKSSQNVLDSITKSKE 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFIF++GI+ +G   + +LA ++ S ++F              +  LI +  +G+I
Sbjct: 516 PSLARFIFAIGIKDIGEVSSDALANHFGSLESFRDA----------KFEELIEINYIGEI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           IA  IV F+ +  NI  VE  L       +  + E   +     K +V TG+ +   R +
Sbjct: 566 IANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+    LL
Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678


>gi|182625562|ref|ZP_02953333.1| DNA ligase, NAD-dependent [Clostridium perfringens D str. JGS1721]
 gi|177909250|gb|EDT71715.1| DNA ligase, NAD-dependent [Clostridium perfringens D str. JGS1721]
          Length = 662

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 209/711 (29%), Positives = 353/711 (49%), Gaps = 58/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +K +  L +E++ +   YY      + D +YD        +          + P  P 
Sbjct: 2   DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIFFT 129
            ++G  +     K TH     SL+K   +E++R++  R  +F ++      ++   + + 
Sbjct: 58  QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKYI 117

Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+ 
Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247
           GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G   
Sbjct: 176 GEAIMTTEAFEKYNSEA----ETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +D
Sbjct: 232 GAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G  
Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATL+N D I             + +R+G  V V+R+ +VIP+++ ++        + 
Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C + +V +             C   L C  Q ++ + HF  R+A NI G  
Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++  +  F+  D    IR  +D++ L+        K+ ++  FG     NL D+I K ++
Sbjct: 452 EKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKSKD 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VGDI
Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++I+EF++  R +  +  LL          ++ + S    K +V TGTL+   R   +
Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F  ++
Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662


>gi|313668860|ref|YP_004049144.1| DNA ligase [Neisseria lactamica ST-640]
 gi|313006322|emb|CBN87785.1| putative DNA ligase [Neisseria lactamica 020-06]
          Length = 827

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 249/852 (29%), Positives = 387/852 (45%), Gaps = 168/852 (19%)

Query: 8   PIEALS-IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           P E LS +    + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L 
Sbjct: 2   PSENLSAMNPTAQRIHELTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELK 61

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRF 117
               P+ P  ++GGE      +V H +P LSL   ++ +         ++  F  R+   
Sbjct: 62  L---PDSPTQRVGGEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRNG 118

Query: 118 WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177
                     + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L
Sbjct: 119 LN---GEQPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRL 175

Query: 178 SLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRY 235
                PE+IEVRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R 
Sbjct: 176 HGENTPELIEVRGEVLMLKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRK 235

Query: 236 LNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFH-GIVSYYNEMKSIRS 293
           L+FF + + +      A+   + L   + LGF + +G          ++++Y +M+  R 
Sbjct: 236 LHFFPYSVARQQGGFVAEAHIQELAYFQELGFSLPDGNFGCFKNIGEVLAFYGQMQQKRP 295

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            LPY+IDG+V KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +T
Sbjct: 296 ELPYEIDGMVVKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVT 355

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVARL+PV +GG  +TNATLHN+D +             +D+R+GD V+V+RAG+VIP+V
Sbjct: 356 PVARLQPVFVGGVTVTNATLHNQDEVSR-----------KDVRIGDTVVVRRAGDVIPEV 404

Query: 414 VDIIVNERHPDA--------------------------------QPFSFPSFCPICQSRV 441
           V +I   R                                    +P+  P+ CPIC+S +
Sbjct: 405 VRVIFERRPMQETAVAVSDGIGHRQDDLFAETPSAGQTRSVPLHKPYRLPTRCPICRSEI 464

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            R+         A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +   
Sbjct: 465 EREEGE------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD--- 515

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYD 540
             +R  AD++ L         +  +                               N+  
Sbjct: 516 -LVRHFADLYRLDIPTLQKMKETADKTVAESDQMPSEVSSVGASGKHKKQPVKWAENILG 574

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD------ 594
            I   +   L RF+F+LGIRHVG   A++LA+ + + +   +    I+A   D       
Sbjct: 575 GIESGKTPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPILACLPDIGTVVAH 634

Query: 595 --------------WLSLIR--------------------------VPL--VGDIIAQAI 612
                            L+                           +P   + +  AQA+
Sbjct: 635 SIAHFFAQAEQQAMIDELLAAGVAPQAQAVSLPVAQYAEPQRWIARLPGFKISENKAQAL 694

Query: 613 VE---------------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----E 646
            E                     +    +N   +E L    +      E    S      
Sbjct: 695 WELAGQSIKGLQNDKALPADWQAWRSETQNAVLLENLKTFFAQMPSEDETAQGSDGINEA 754

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K  V TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV
Sbjct: 755 VAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGV 814

Query: 707 KIMNEEQFLFLL 718
            +++E + L LL
Sbjct: 815 SVLSEAELLTLL 826


>gi|309378943|emb|CBX22396.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 827

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 249/852 (29%), Positives = 387/852 (45%), Gaps = 168/852 (19%)

Query: 8   PIEALS-IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           P E LS +    + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L 
Sbjct: 2   PSENLSAMNPTAQRIHELTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELK 61

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRF 117
               P+ P  ++GGE      +V H +P LSL   ++ +         ++  F  R+   
Sbjct: 62  L---PDSPTQRVGGEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRNG 118

Query: 118 WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177
                     + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L
Sbjct: 119 LN---GEQPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRL 175

Query: 178 SLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRY 235
                PE+IEVRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R 
Sbjct: 176 HGENTPELIEVRGEVLMLKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRK 235

Query: 236 LNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFH-GIVSYYNEMKSIRS 293
           L+FF + + +      A+   + L   + LGF + +G          ++++Y +M+  R 
Sbjct: 236 LHFFPYSVARQQGGFVAEAHIQELAYFQELGFSLPDGNFGCFKNIGEVLAFYGQMQQKRP 295

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            LPY+IDG+V KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +T
Sbjct: 296 ELPYEIDGMVVKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVT 355

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVARL+PV +GG  +TNATLHN+D +             +D+R+GD V+V+RAG+VIP+V
Sbjct: 356 PVARLQPVFVGGVTVTNATLHNQDEVSR-----------KDVRIGDTVVVRRAGDVIPEV 404

Query: 414 VDIIVNERHPDA--------------------------------QPFSFPSFCPICQSRV 441
           V +I   R                                    +P+  P+ CPIC+S +
Sbjct: 405 VRVIFERRPMQETAVAVSDGIGHRQDDLFAETPSAGQTRSVPLHKPYRLPTRCPICRSEI 464

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            R+         A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +   
Sbjct: 465 EREEGE------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD--- 515

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYD 540
             +R  AD++ L         +  +                               N+  
Sbjct: 516 -LVRHFADLYRLDIPTLQKMKETADKTVAESEQMPSEVSSVGASGKHKKQPVKWAENILG 574

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD------ 594
            I   +   L RF+F+LGIRHVG   A++LA+ + + +   +    I+A   D       
Sbjct: 575 GIESGKTPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPILACLPDIGTVVAH 634

Query: 595 --------------WLSLIR--------------------------VPL--VGDIIAQAI 612
                            L+                           +P   + +  AQA+
Sbjct: 635 SIAHFFAQAEQQAMIDELLAAGVAPQAQAVSLPVAQYAEPQRWIARLPGFKISENKAQAL 694

Query: 613 VE---------------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----E 646
            E                     +    +N   +E L    +      E    S      
Sbjct: 695 WELAGQSIKGLQNDKALPADWQAWRSETQNAVLLENLKTFFAQMPSEDETAQGSDGINEA 754

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K  V TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV
Sbjct: 755 VAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGV 814

Query: 707 KIMNEEQFLFLL 718
            +++E + L LL
Sbjct: 815 SVLSEAELLTLL 826


>gi|325131881|gb|EGC54581.1| DNA ligase, NAD-dependent [Neisseria meningitidis M6190]
          Length = 841

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 247/842 (29%), Positives = 380/842 (45%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D     
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  I+ +  IP  L     PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           VRGEV + K DF+ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMLKADFVALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303
             +   A+   + L   + LGF + NG          V  + E    +    PY+IDG+V
Sbjct: 260 QQDGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +++GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDLDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550
            L         +  +                               N+   I   +   L
Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---------------- 594
            RF+F+LGIRHVG   A++LA+ + + +   +    ++A   D                 
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658

Query: 595 ----WLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614
                  L+                           +P   + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQTDKALPTDWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|271969279|ref|YP_003343475.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021]
 gi|270512454|gb|ACZ90732.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021]
          Length = 726

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 211/745 (28%), Positives = 354/745 (47%), Gaps = 67/745 (8%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           + +P+ AL         + L + +   +  Y+    P + D++YD   R    I    P 
Sbjct: 6   EGVPVAALD------RHAELTELVEQANWRYHVLDSPTVSDAQYDTWMRELRGIEEEHPS 59

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           L     P+ P  K+G  ++     V H     SL+  +N +DL  +  R  R  ++   +
Sbjct: 60  L---RTPDSPTQKVGAPISSDFTPVAHLQRMESLDNAFNADDLASWQARAERLAER---D 113

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PE 183
              +  E KIDG  I + YEKG+ V  A RGDG  G+DV+A +R +  +P  L+ +  P+
Sbjct: 114 PAPYLCELKIDGLAIALVYEKGRLVRGATRGDGRVGDDVTANVRTVAGVPHRLAGDDVPD 173

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
           ++E+RGEVY+  + F+ LN++++A G+ P+ANPRN+A+G LR  +P     R L+  VHG
Sbjct: 174 LVEIRGEVYMPVDGFVKLNEQLVAAGKAPFANPRNSAAGSLRMKDPRITAQRPLHLIVHG 233

Query: 243 LG-KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           +G        + Q  + +++R  G PV++  +  +   GI ++    +  R    Y+IDG
Sbjct: 234 VGRWEGTALPRTQSGVYERLREFGLPVSDLYKVVDDLDGINAFIEFYREHRHDPAYEIDG 293

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVD   LQ  LG  +R+PRW I++K+  ++ +T+LLDI + +GRTG +TP   +EP+
Sbjct: 294 VVVKVDRIELQNNLGSTSRAPRWAIAYKYPPEEVNTKLLDIQVGVGRTGRVTPYGVMEPI 353

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ +  ATLHN   +             + +R+GD V++++AG+VIP++V  +V+ R
Sbjct: 354 VVAGSTVERATLHNGSEVAR-----------KGVRIGDTVVLRKAGDVIPEIVGPVVDLR 402

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + F+ P+ CP C + +  +      +  A  RC    AC AQ  ER+     R A 
Sbjct: 403 DGTEREFTMPTHCPECGTALAYE-----KEGDADLRCPNTRACPAQLRERIFFAAGRRAL 457

Query: 482 NIEGLGKQQLDFFFKSEDP-AFSIRIPADIFTLQRR------------------------ 516
           +IEGLG        +   P    +R  AD+F L                           
Sbjct: 458 DIEGLGYVAATALTQPLPPQEPPVRTEADLFDLTIERLLPIRSVVRDPDTGLPKTDPETG 517

Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                    N  G    +   + + + K ++  + R + +L IRHVG   A+++A  + S
Sbjct: 518 DPKVVAFFANQSGEPSKNAEKMLEELEKAKDQPVWRVLVALSIRHVGPPTAQAIAAEFRS 577

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
               A      +A              VG  +A AI ++++   +   V+          
Sbjct: 578 IDAIAAASEEELAAVE----------GVGPRVAAAIRDWFEVDWHREIVDRWKAAGVRME 627

Query: 637 GRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
                +     +     V TGTL+   R +A   +   G  VS+ +S+KT  ++ G+N G
Sbjct: 628 DEPPTDQLPQTLAGLTFVVTGTLEAFTRDEAGAALAARGGKVSSSVSKKTAFLVAGENAG 687

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           SK +KA +LGV I++EE    LL +
Sbjct: 688 SKFDKAVKLGVPILDEEGLRVLLAE 712


>gi|88658391|ref|YP_507122.1| DNA ligase, NAD-dependent [Ehrlichia chaffeensis str. Arkansas]
 gi|123763773|sp|Q2GHG1|DNLJ_EHRCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|88599848|gb|ABD45317.1| DNA ligase, NAD-dependent [Ehrlichia chaffeensis str. Arkansas]
          Length = 676

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 265/708 (37%), Positives = 410/708 (57%), Gaps = 45/708 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
             E+A+ EL  L ++I +HD  YY    P I D+EYD L R+ + I +AFP L +S D  
Sbjct: 3   DQEKAKLELDKLNKQIQHHDVLYYVQDNPEISDAEYDELCRKRNLILNAFPKLTQSNDYQ 62

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
                IG   +    KV H     SL+  +N +D+ KFITR  +F    D+ SI  + E 
Sbjct: 63  N---NIGSSPDTKFAKVKHEEKMFSLDNAFNQQDVEKFITRTKKFLNINDNQSIPLSCEL 119

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG   ++ Y+KG+   A+ RG+G+ GE+++  ++ I  +P ++    P+++EVRGE+Y
Sbjct: 120 KIDGLSFSVIYKKGEIYQASTRGNGYFGENITTNVKTIKNLPHIIHNA-PDLLEVRGEIY 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           I + DF       +      +ANPRNAA+G +R+L+      R L +F++ +  T+ +  
Sbjct: 179 IDRCDF-----IQLNNDGNNFANPRNAAAGSVRQLDHNITAQRKLKYFMYTIVNTACL-- 231

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E+L +++  GF VN      +      ++YN++ + RS + YDIDG++YKV++   
Sbjct: 232 -TQEELLYQLKIWGFCVNEHTITTDNIEEAFNFYNQVYNNRSNINYDIDGIIYKVNDIKS 290

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q  LG  ++SPRW I++KF   +A T+L  I IQIGRTG+LTP+A L P+NIGG ++T A
Sbjct: 291 QHILGTTSKSPRWAIAYKFPAAEAKTQLNKISIQIGRTGVLTPIAELSPINIGGVIVTRA 350

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN++ I+            +DIR GD V+VKRAG+VIP++VD+  N R  +   F FP
Sbjct: 351 SLHNKNEIER-----------KDIREGDYVIVKRAGDVIPQIVDVDKNLRTQELTKFVFP 399

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S V +          A+  CTG L C  Q LE++KHFVS+DAFNI G GK+QL
Sbjct: 400 TTCPSCGSSVYQAKQE------ASIYCTGELFCKDQILEKIKHFVSKDAFNIIGFGKKQL 453

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
            FF++       I    DIFTL+ +   S  K+E++ G+G+ S++NL+ +IN  + ISLE
Sbjct: 454 LFFYEQR----LITNITDIFTLEEKISNSDVKLESLHGWGEKSMSNLFSAINNSKVISLE 509

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            FIF+LGIR +G  IA+ LA ++ SY+ +  E+  +  + +      + +  +G     +
Sbjct: 510 NFIFALGIRFIGKYIAKILANHFSSYETWYNEMLKLAQNEDYS----LNIQQIGSKTIGS 565

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE---NKKLVFTGTLQKIQRHKAQE 668
           +  F+  P N+  +  L+K ++      +   SS +     K +VFTG L  + R +A+ 
Sbjct: 566 LKMFFSQPHNLNMINDLVKHLTI----TDTQSSSYLSLIHGKIIVFTGELSSMSRSEAKI 621

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
                GA VS+ LS+ TD +I G+NPGSK +KAQ L V+I+ E+ +L 
Sbjct: 622 RSETAGAKVSSSLSKNTDFLIAGNNPGSKYKKAQSLNVQILTEDLWLQ 669


>gi|110801053|ref|YP_696931.1| NAD-dependent DNA ligase LigA [Clostridium perfringens ATCC 13124]
 gi|123049624|sp|Q0TN59|DNLJ_CLOP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110675700|gb|ABG84687.1| DNA ligase, NAD-dependent [Clostridium perfringens ATCC 13124]
          Length = 662

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 209/711 (29%), Positives = 353/711 (49%), Gaps = 58/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +K +  L +E++ +   YY      + D +YD        +          + P  P 
Sbjct: 2   DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIFFT 129
            ++G  +     K TH     SL+K   +E++R++  R  +F ++      ++   + + 
Sbjct: 58  QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKYI 117

Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+ 
Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247
           GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G   
Sbjct: 176 GEAIMTTEAFEKYNSEA----DTPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +D
Sbjct: 232 GAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G  
Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATL+N D I             + +R+G  V V+R+ +VIP+++ ++        + 
Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C + +V +             C   L C  Q ++ + HF  R+A NI G  
Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++  +  F+  D    IR  +D++ L+        K+ ++  FG     NL D+I K ++
Sbjct: 452 EKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKSKD 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VGDI
Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++I+EF++  R +  +  LL          ++ + S    K +V TGTL+   R   +
Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F  ++
Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662


>gi|158319601|ref|YP_001512108.1| NAD-dependent DNA ligase LigA [Alkaliphilus oremlandii OhILAs]
 gi|190359226|sp|A8MLJ8|DNLJ_ALKOO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|158139800|gb|ABW18112.1| DNA ligase, NAD-dependent [Alkaliphilus oremlandii OhILAs]
          Length = 661

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 208/708 (29%), Positives = 355/708 (50%), Gaps = 59/708 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + L  L   ++ +   YY   +P++ D EYD L      +         +   + P  ++
Sbjct: 5   ERLRQLVDILNEYSYQYYVLDEPVVSDKEYDQLYDELVLLEKE----LNTVLEDSPTIRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++  +     H  P  SL+K    E+L  +  R+ R  +      I + +E K DG  
Sbjct: 61  GGDVLKNFKAHNHLAPLWSLDKCKTPEELISWDLRVRRLLEGSGV-PIEYVMEYKFDGLT 119

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + Y  G+ V AA RG+G +GE +   ++ I TIP  L++     IEV+GE  +  +  
Sbjct: 120 LNLTYNNGQLVQAATRGNGTTGEGILEQVKTIKTIP--LTIPHKGRIEVQGEGLMGLSVL 177

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
            A N   +    +P  NPRNAA+G LR L+P     R L+ F + +G    I      E+
Sbjct: 178 AAYNKTAL----EPLKNPRNAAAGALRNLDPKVTAKRKLSAFCYNVGFYEGIDFNTHMEI 233

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L  ++   FPV+N  ++ +T H ++     +     +L +  DGLV KV+    ++ LG 
Sbjct: 234 LAFLKANKFPVSNYTKKFHTIHQVIEEIETIGEQVKSLDFLTDGLVIKVNHMEARRLLGY 293

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             + PRW ++ KF  ++ +T L D+  Q+GRTG LTP A LEP++IGG  ++ ATL+N +
Sbjct: 294 TQKFPRWAMAFKFEAEEMTTELKDVIWQVGRTGKLTPAAVLEPIDIGGVTVSRATLNNWE 353

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            + +++G RV ++R+ +VIP+++  I       A     P  CP C
Sbjct: 354 DIQR-----------KKVKIGCRVWIRRSNDVIPEIMGSIEET-LEGAMDIEKPQHCPAC 401

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S V         +  A   C   L+C  Q + R+ H+ SRDA +I G  ++  +  F+ 
Sbjct: 402 HSEV--------VERGAHIFCPNSLSCKPQLVSRIVHYASRDAMDIVGFSEKTAEQLFEE 453

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                ++R  AD++ ++            +  FGD    NL ++I   +N  L+ F+++L
Sbjct: 454 ----LNLRDLADLYEIKYEDLIK------LPRFGDKKARNLLEAIENSKNCKLDSFVYAL 503

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI +VG + A  LAK+Y S+Q   +           ++  LI +P VGDI+AQ+I++F++
Sbjct: 504 GIPNVGRKTATDLAKHYKSFQAIQEA----------EFQELITLPDVGDIVAQSIIDFFE 553

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
           +     +V  L+ E    + +  +   +    K +V TGTL+K  R + +E + +LGA V
Sbjct: 554 DEEIKKSVNRLINEGIRPLFKEVEQQENIFLGKTVVVTGTLEKYGRKEIKELLEKLGAKV 613

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQL---GVK----IMNEEQFLFLL 718
           +  +S+ TD ++ G+  GSKLEKA ++   GV+    I++E +F  +L
Sbjct: 614 TGSVSKNTDFLLAGEAAGSKLEKAMEIIASGVETSLRIISEAEFEAML 661


>gi|251799680|ref|YP_003014411.1| NAD-dependent DNA ligase LigA [Paenibacillus sp. JDR-2]
 gi|247547306|gb|ACT04325.1| DNA ligase, NAD-dependent [Paenibacillus sp. JDR-2]
          Length = 677

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 202/732 (27%), Positives = 331/732 (45%), Gaps = 68/732 (9%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M+ +   P E L+       +  L  EIS H+  YY   +P I D++YD L     A+  
Sbjct: 1   MENQTATP-EQLT------RMQELAAEISAHNYSYYTLDQPTINDADYDKLYDELVALEA 53

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ- 119
                     P+ P  ++GGE+        H     SL+K  + EDL  +  R+ +    
Sbjct: 54  D----TGVVLPDSPTQRVGGELLKGFEPHRHRARLWSLDKAQDTEDLLAWNQRVLKAIND 109

Query: 120 -------KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT 172
                  ++      + +E K DG  + + YE G+ + A+ RG+G  GE + A ++ I +
Sbjct: 110 YNAKHPEEEPLPQPNYVIELKFDGLTLNLTYENGQLIQASTRGNGTVGEGILAQVKTIRS 169

Query: 173 IPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD- 231
           +P  +      IIEV+GE  ++ +     N        +P  N RNAA+G LR LNP   
Sbjct: 170 VPLTIP-FGDGIIEVQGEGIMNLSVLERYNQTA----AEPLKNARNAAAGALRNLNPKTT 224

Query: 232 ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
             R LN F + +G    +      EM Q ++   F VN      N+   +      +   
Sbjct: 225 AERKLNAFFYNVGFAEGVSFSNHREMQQFLKDNLFKVNPYALYLNSIEEVQEELLRIAEK 284

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R  L + IDG V K+ +   ++ LG   + PRW ++ KF  ++A+T L  +  ++GRTG 
Sbjct: 285 RLELDFLIDGAVVKLTDMRTREALGYTDKFPRWAVAFKFEAEEAATVLESVSWEVGRTGK 344

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVAR+E V + G  + N TL+N   I+  +             +G  V ++R+ +VIP
Sbjct: 345 ITPVARVEAVELAGVTVQNCTLNNIGDIERKNLKHA---------LGTLVSIRRSNDVIP 395

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +++  +        Q   FP+ CP C + + +          A   C   L C  Q + R
Sbjct: 396 EILGKVDE---EPGQEIVFPAVCPACGTELEQR--------GAHLFCNNKLGCRPQIIGR 444

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           + HF SRDA +IE       +  +   D    +  PAD++ L             +  FG
Sbjct: 445 ITHFSSRDAMDIEAFSVMTAEQLYADCD----VHDPADLYALGYDDLIK------LDRFG 494

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           D     L D+I K ++  L  F+F+LGI + G    + LA +Y S               
Sbjct: 495 DKKARKLLDAIEKSKDRDLAAFLFALGIPNTGKATTKMLADHYGSLDGVMSAT------- 547

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIEN 649
                 L+ +  VG I+A +IV ++ +P    ++  + +    +       V   S    
Sbjct: 548 ---AEELVGLQDVGAIVADSIVNYFADPIIAASIARMREHGVKAEAEQPVVVRQDSIFSG 604

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K +V TGTL K+ R +A + +   GA VS  +S+KTD +I G++ GSKL KA+ LG+ ++
Sbjct: 605 KTVVLTGTLSKMSRDEAAKKLEAFGAKVSGSVSKKTDFVIAGESAGSKLTKARDLGITVI 664

Query: 710 -NEEQFLFLLQQ 720
            +E++ L LL +
Sbjct: 665 EDEDELLRLLGE 676


>gi|289450450|ref|YP_003474988.1| DNA ligase (NAD+) [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184997|gb|ADC91422.1| DNA ligase (NAD+) [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 758

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 229/701 (32%), Positives = 373/701 (53%), Gaps = 42/701 (5%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E++ L  E+++H++ YY    PII D  YDA+ RR + +  A P+   +   + P  K+
Sbjct: 94  REITELRAELNFHNNLYYVEDSPIISDYSYDAMLRRLEELETAHPEYMTT---DSPTVKV 150

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG  +    K+TH +P  SL  +++ E+L++ + R+               +E KIDG  
Sbjct: 151 GGRASEKFRKLTHIVPMQSLRDVFSREELQEAVERMQEQLPVGA----ELVVEEKIDGLS 206

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +++ YE G FV  + RGDG  GE+++  ++ I ++P  L   +P + EVR E+Y++K +F
Sbjct: 207 VSLEYENGVFVRGSTRGDGLVGEEITENLKQIKSLPLKLQKPLPYL-EVRAEIYLNKENF 265

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
            ALN   +A G KP+ANPRNAA+G LR+L+P     R L+FF   + +   I      E 
Sbjct: 266 AALNKAQLAAGLKPFANPRNAAAGSLRQLDPRITRDRNLSFFAFNIQRVEGITFTTHDES 325

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L  +   GFPV       + F  I     ++ + R++LPY IDG V K++    +++LG 
Sbjct: 326 LFYICNEGFPVVYSSFAHSDFAKIWECVEKIATRRASLPYMIDGAVIKINNLQYREKLGV 385

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A++PRW +++K+  ++  T + DI +Q+GRTG +TP+A LEPV + G+ +++ATLHN D
Sbjct: 386 TAKTPRWAVAYKYPPEEQETVVKDIKLQVGRTGKITPLAVLEPVMVDGSCVSSATLHNAD 445

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YIK            +DIRVGD VL+ +AG+VIP +  ++++ R   A+PF  P  CP+C
Sbjct: 446 YIK-----------AKDIRVGDTVLIAKAGDVIPAIQKVVLDRRPLKAKPFVMPDKCPVC 494

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
             +++R       +     RC G L+C AQ   RL H V++DA +I  LG   L    + 
Sbjct: 495 GEKLIRR-----KENEVDLRC-GNLSCPAQVFRRLLHMVAKDALDIADLGPAVLARLQE- 547

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  I   +DIF L   +     ++ N+ GF   SV NL + I K +   L+RFI +L
Sbjct: 548 ---AGLINELSDIFRLAAYRP----EMLNLPGFQQKSVDNLLNEIEKAKVKPLDRFIVAL 600

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI +VG   A+ LA  +            + A    D  +L+ V  +G   AQ+I++F++
Sbjct: 601 GIDYVGVVAAKKLAVAFRK--------GGLSALAAADIETLLSVETIGQTAAQSIIDFFK 652

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
            P  +  ++A  +             +   + K    TGTL+  +R + ++ +   G  V
Sbjct: 653 RPTTVALLQAWQELGVKPASPPLIEENGVWQGKIFAVTGTLENYKRSEVKQLIEARGGTV 712

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  +S K   +I G+  G KL KA++LG+ + +E  F   L
Sbjct: 713 ANTVSSKIFAVIAGEKAGGKLAKAKELGIPVWSETDFAAKL 753


>gi|326403263|ref|YP_004283344.1| DNA ligase [Acidiphilium multivorum AIU301]
 gi|325050124|dbj|BAJ80462.1| DNA ligase [Acidiphilium multivorum AIU301]
          Length = 682

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 266/701 (37%), Positives = 401/701 (57%), Gaps = 40/701 (5%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  L+ L + ++  D  YY+   PI+ D+ YDAL+R   ++  A PDLA + D      +
Sbjct: 15  KARLAELIERLAAADAAYYRDDAPIMDDAAYDALRREAASLRAAHPDLAAALD------Q 68

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   + +  KV H IP LSL+ ++   D  +F   I RF        + F  EPKIDG 
Sbjct: 69  VGTTPSGAFGKVRHRIPMLSLDNVFEPADFVEFCASIRRFLGL-GTAPLAFVAEPKIDGL 127

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ YE  +FV  A RGDG  GEDV+  +R +  +P  L  + P+ IE+RGEVY++K D
Sbjct: 128 SISLTYENRRFVRGATRGDGTEGEDVTENLRTLRELPATLPDDAPDFIEIRGEVYMTKTD 187

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F+ALN        + +ANPRNAA+G LR+L+P    +R L+ F +  G +SE   +  ++
Sbjct: 188 FIALNQGQ----ARQFANPRNAAAGSLRQLDPAVTASRRLSLFAYARGASSEAVGETHWD 243

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L  +R  GFPVN    + +       +   +   R+ L YDIDG+VYK+D+ +LQ++LG
Sbjct: 244 YLATLRRWGFPVNPLAERVSE-AAAEPFQRSIGERRAGLDYDIDGVVYKIDDLALQERLG 302

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              R+PRW ++ KF  ++A T L  IDIQ+GRTG LTP ARL+PVN+GG L+++ATLHNE
Sbjct: 303 FAGRAPRWAVAWKFPAERALTTLRGIDIQVGRTGALTPRARLDPVNVGGVLVSHATLHNE 362

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I             +D+R+GD V ++RAG+VIP+++  +   R  D+ PF FP  CP 
Sbjct: 363 DEIAR-----------KDVRIGDTVELQRAGDVIPQILRALPERRPADSVPFVFPDHCPA 411

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +  +R             RCTGGL+C AQ +ERL HF SR AF+IEG+G++ +  F  
Sbjct: 412 CGALAIRPAGE------VVRRCTGGLSCPAQVVERLIHFCSRLAFDIEGMGEKTVQEFH- 464

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +  PADIFTL+ R+      I  + G+G+VS   L  +I+ RR ISL RFI++
Sbjct: 465 ---GLGWLESPADIFTLRDREA----AIAALEGWGEVSARKLIAAIDARRRISLARFIYA 517

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR +G + A+ LA++Y SY  + +++       +D  L L  +  +G  IA+ +  F+
Sbjct: 518 LGIRRIGEQNAKLLARHYSSYAVWRRQMEEAGVIGSDARLELGSISGIGPSIAEELAGFF 577

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
             P N   ++ L+  ++          +     K +VFTGTL+ + R +A+     LGA 
Sbjct: 578 AEPHNRDLLDRLVPILTIEDEVAAAGGALAG--KTIVFTGTLESLTRPEAKARAEALGAR 635

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KTD ++VG + GSK  KA  LGV +++E +F  L
Sbjct: 636 VTESVSKKTDFVVVGADAGSKAAKATSLGVTVLSEAEFRSL 676


>gi|83319601|ref|YP_424672.1| DNA ligase, NAD-dependent [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|123740036|sp|Q2SRE1|DNLJ_MYCCT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83283487|gb|ABC01419.1| DNA ligase, NAD-dependent [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 668

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 228/712 (32%), Positives = 385/712 (54%), Gaps = 46/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S EQ    ++ L+++++     YY    P + D+EYD   +   ++ + +P+   S   
Sbjct: 1   MSKEQILLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLENLYPEFITS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG ++    K+TH  P LSL  ++N ++  +F T++ +     ++    +  E
Sbjct: 58  DSPSQKVGGTVSEKFLKITHKTPMLSLGNVFNFDEFLEFNTQVSKVSNNLNN---EYVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE G  V AA RG+G  GEDV+  +R I +IP  L ++  E +EVRGE+
Sbjct: 115 LKIDGLSISLVYENGVLVSAATRGNGVIGEDVTTNVRTIKSIP--LKISKKERVEVRGEI 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           Y+SK +F  +N + +      + NPRNAA+G LR+L+   +             + +   
Sbjct: 173 YLSKAEFEKINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYYISDDSPN 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             QYE + K+  LGF  N           I +Y ++  ++++ L Y IDG+V+K+++ +L
Sbjct: 233 LNQYESILKLNQLGFKTNKETMLCKNLDQIKAYIDKYTNLKNDLDYQIDGIVFKINDKNL 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q  LG  ++ P+W I++KF  +   T+LLDI   +GRTG +T  A+LEPV + GA I+ A
Sbjct: 293 QNSLGFTSKIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGATISAA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TL+N +YIK            +D+R+   V +K+AG+VIP+V++ I +E   + + F   
Sbjct: 353 TLNNAEYIKS-----------KDLRINSIVKIKKAGDVIPEVIEAIKDETFYNLEVFQPI 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            +CP C S + ++ N          +     +CS + L  L+HF SR+A NI  LG + L
Sbjct: 402 LYCPNCHSLLEKNENE-------VDQFCINSSCSMKILRSLQHFSSREAMNIVSLGDRSL 454

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F  E     I+  +DI+ L+  +     +I  I  FG  S  NL DSIN  +N SLE
Sbjct: 455 EILFNLE----IIQNISDIYKLEEYKD----QILAIENFGLKSYLNLIDSINMSKNNSLE 506

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +F LGIRH+G++ A+ LA+ Y +  N  +            +  LI++  +G+ +A +
Sbjct: 507 KVLFGLGIRHIGSKTAKILARKYQNIDNLMKA----------SYDELIQINSIGESLALS 556

Query: 612 IVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I+++++   N+  +  L    ++ +    + N  S I NK  V TGTL +  R + +  +
Sbjct: 557 IIDWFKIEDNLKLINELKSFNINFNYLGAKINSDSIIANKTFVITGTLTR-PREEFKTLI 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
                 +S  +S++TD ++ G+N GSKLEKA++LGV I++E+QF  LL+   
Sbjct: 616 ENNAGKISGSISKQTDYLLAGNNVGSKLEKAKKLGVIIIDEQQFFDLLKSEK 667


>gi|168213168|ref|ZP_02638793.1| DNA ligase, NAD-dependent [Clostridium perfringens CPE str. F4969]
 gi|170715278|gb|EDT27460.1| DNA ligase, NAD-dependent [Clostridium perfringens CPE str. F4969]
          Length = 662

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 209/711 (29%), Positives = 353/711 (49%), Gaps = 58/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +K +  L +E++ +   YY      + D +YD        +          + P  P 
Sbjct: 2   DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIFFT 129
            ++G  +     K TH     SL+K   +E++R++  R  +F ++      ++   + + 
Sbjct: 58  QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNIKFLEEYNRTSDEELPPLKYI 117

Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+ 
Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247
           GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G   
Sbjct: 176 GEAIMTTEAFEKYNSEA----ETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +D
Sbjct: 232 GAPFKTYMEMLNFIKTKGFPMDDYIRECKTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G  
Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATL+N D I             + +R+G  V V+R+ +VIP+++ ++        + 
Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C + +V +             C   L C  Q ++ + HF  R+A NI G  
Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++  +  F+  D    IR  +D++ L+        K+ ++  FG     NL D+I K ++
Sbjct: 452 EKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKSKD 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VGDI
Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++I+EF++  R +  +  LL          ++ + S    K +V TGTL+   R   +
Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F  ++
Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662


>gi|59800688|ref|YP_207400.1| putative DNA ligase [Neisseria gonorrhoeae FA 1090]
 gi|75356380|sp|Q5F9Z9|DNLJ_NEIG1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|59717583|gb|AAW88988.1| putative DNA ligase [Neisseria gonorrhoeae FA 1090]
          Length = 823

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 251/841 (29%), Positives = 381/841 (45%), Gaps = 163/841 (19%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P I D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  +
Sbjct: 62  VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187
            +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L     PE+IEV
Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVPELIEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246
           RGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 179 RGEVLMLKADFAALNQRQTENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVARQ 238

Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304
              + A+   + L   + LGF + NG        G V  + E    +    PY+IDG V 
Sbjct: 239 QGGLIAEEHIQELAYFQALGFSLPNGNFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVV 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452
                                            +P+  P+ CPIC+S + R+        
Sbjct: 408 ETAVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIEREEGE----- 462

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DIF 511
            A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +       +   DI 
Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVRHFADLYRIDIP 521

Query: 512 TLQRRQQT--------------------STTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           TLQ+ ++T                    S    +N          N+   I   +   L 
Sbjct: 522 TLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPELA 581

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----------------- 594
           RF+F+LGIRHVG   A++LA+ + + +   +    ++A   D                  
Sbjct: 582 RFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQ 641

Query: 595 ---WLSLIR--------------------------VPL--VGDIIAQAIVE--------- 614
                 L+                           +P   + +  AQA+ E         
Sbjct: 642 QAMIDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSIEGL 701

Query: 615 ------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGT 657
                       +    +N   +E L    +      E    S      +  K  V TGT
Sbjct: 702 QNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGT 761

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L   +R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L L
Sbjct: 762 LPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGETAGSKLEKANALGVSVLSEAELLTL 821

Query: 718 L 718
           L
Sbjct: 822 L 822


>gi|288919113|ref|ZP_06413452.1| DNA ligase, NAD-dependent [Frankia sp. EUN1f]
 gi|288349457|gb|EFC83695.1| DNA ligase, NAD-dependent [Frankia sp. EUN1f]
          Length = 715

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/716 (31%), Positives = 346/716 (48%), Gaps = 48/716 (6%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
              R   + L +++  H   YY    P I D+EYDAL R  D I   +P+L      + P
Sbjct: 36  AAVRARAAELARDLEEHAHRYYVLDAPTIADAEYDALLRELDQIEQQYPEL---RTADSP 92

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K+ G  +     VTH    LSL+ +++ +    +  R  R     +     +  E KI
Sbjct: 93  TQKVAGSYSTLFTPVTHLERLLSLDNVFDEDGFHAWAARAAR-----EQPVEAWLCELKI 147

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  + + YE G  V AA RGDG +GED++  +R + ++P  L    +PE++EVRGEVY 
Sbjct: 148 DGLAVDLVYEAGALVSAATRGDGRTGEDITLNVRTLRSVPARLRGPGVPELLEVRGEVYF 207

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
               F  LN  ++  G+ P+ANPRNAA+G LR+ +P     R L   VHGLG       +
Sbjct: 208 PTAGFAELNASLVEAGKAPFANPRNAAAGSLRQKDPRVTAGRPLAMIVHGLGANRGFEVE 267

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q    +++  LG PV+   +       ++++       R  + ++IDG+V KVD F+ Q
Sbjct: 268 SQSAAYERLAELGLPVSTRYQVCAGVDEVLAFVRAWGEQRHDVEHEIDGVVIKVDGFAQQ 327

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  +++PRW ++ K+  ++ +TRL DI + +GRTG +TP   LEPV + G+ +  AT
Sbjct: 328 RRLGATSKAPRWAVAFKYPPEEVTTRLRDIQVNVGRTGRVTPFGVLEPVKVAGSTVGMAT 387

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D +           G + + +GD V++++AG+VIP++V  +V+ R    + F  P+
Sbjct: 388 LHNIDEV-----------GRKGVLIGDVVVLRKAGDVIPEIVSPVVDLRDGSERAFVMPT 436

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +VR             RC   ++C AQ  E + H  SR A +I+GLG +   
Sbjct: 437 HCPECGTELVRPEGE------VDIRCPNTVSCPAQLRESVFHLASRGALDIDGLGYETAT 490

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      IR   DIF L           E + GF    V  +   I   R+  L R
Sbjct: 491 VLLAE----GRIRDIGDIFHLAPE------SFEGLRGFASKKVDQILRGIEAARDRPLWR 540

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +  L IRHVG   AR+LA+   S    A      +A           V  VG  IA+A+
Sbjct: 541 LLVGLSIRHVGPTAARALARELRSLDAIAAAPAERLAA----------VDGVGPKIAEAV 590

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           V+++ +PR+   V  +    +             ++   +V TGTLQ   R  A E V  
Sbjct: 591 VDWFADPRHRDVVARIAAGGARLADEGAGEGPGLLDGVVVVITGTLQGWSRDTATEAVQA 650

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727
            G  V+  +S+KT  ++ G +PG SK +KA  L + +++E  F  LL       R+
Sbjct: 651 RGGKVTGSVSKKTTFVVAGVDPGASKYQKALSLRIPLLDETGFAALLGDGADAARV 706


>gi|110803876|ref|YP_699521.1| NAD-dependent DNA ligase LigA [Clostridium perfringens SM101]
 gi|122956526|sp|Q0SQT6|DNLJ_CLOPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110684377|gb|ABG87747.1| DNA ligase, NAD-dependent [Clostridium perfringens SM101]
          Length = 662

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 207/711 (29%), Positives = 353/711 (49%), Gaps = 58/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +K +  L +E++ +   YY      + D +YD        +          + P  P 
Sbjct: 2   DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIFFT 129
            ++G  +     K TH     SL+K   +E++R++  R  +F ++      ++   + + 
Sbjct: 58  QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKYI 117

Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           L  K DG  I + Y E G  +  A RG G  GEDV+A ++ I +IP  L ++  + +E+ 
Sbjct: 118 LTKKFDGLTINLSYDENGVLITGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247
           GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G   
Sbjct: 176 GEAIMTTEAFEKYNSEA----DTPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +D
Sbjct: 232 GAPFKTYMEMLNFIKTKGFPMDDYIRECKTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G  
Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATL+N D I             + +R+G  V V+R+ +VIP+++ ++        + 
Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C + +V +             C   L C  Q ++ + HF  R+A NI G  
Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++  +  F+  D    IR  +D++ L+        K+ ++  FG     NL D+I K ++
Sbjct: 452 ERTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKSKD 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VGDI
Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++I+EF++  R +  +  LL          ++ + S    K +V TGTL+   R   +
Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +  LGA VS  +S+KTD +I G+  GSK +KA+ LG+ I++EE+F  ++
Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGITILSEEEFENMI 662


>gi|168205087|ref|ZP_02631092.1| DNA ligase, NAD-dependent [Clostridium perfringens E str. JGS1987]
 gi|170663244|gb|EDT15927.1| DNA ligase, NAD-dependent [Clostridium perfringens E str. JGS1987]
          Length = 662

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 209/711 (29%), Positives = 353/711 (49%), Gaps = 58/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +K +  L +E++ +   YY      + D +YD        +          + P  P 
Sbjct: 2   DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIFFT 129
            ++G  +     K TH     SL+K   +E++R++  R  +F ++      ++   + + 
Sbjct: 58  QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKYI 117

Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+ 
Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247
           GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G   
Sbjct: 176 GEAIMTTEAFEKYNSEA----ETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +D
Sbjct: 232 GAPFKTYMEMLNFIKVKGFPMDDYIRECKTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G  
Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATL+N D I             + +R+G  V V+R+ +VIP+++ ++        + 
Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C + +V +             C   L C  Q ++ + HF  R+A NI G  
Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++  +  F+  D    IR  +D++ L+        K+ ++  FG     NL D+I K ++
Sbjct: 452 EKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKSKD 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VGDI
Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++I+EF++  R +  +  LL          ++ + S    K +V TGTL+   R   +
Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F  ++
Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662


>gi|317485271|ref|ZP_07944151.1| DNA ligase [Bilophila wadsworthia 3_1_6]
 gi|316923397|gb|EFV44603.1| DNA ligase [Bilophila wadsworthia 3_1_6]
          Length = 698

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 247/732 (33%), Positives = 391/732 (53%), Gaps = 54/732 (7%)

Query: 9   IEALSIEQA-RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           +++L +E A +K L  L   + YH+  Y+    P I D EY+A  +    +    P+   
Sbjct: 6   LQSLLVEDADKKRLEELRAFVIYHNHRYHTLDAPEITDDEYNAAFQELLRLEERHPEW-- 63

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P N+IGG++  SL    H+    SL+ +++ E+ + F+ R+    +  +     
Sbjct: 64  -RSPDSPTNRIGGQVLSSLETKAHTRRMYSLDNVFDAEEWQGFLKRLDNAQEGLEH---A 119

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           F  +PK+DG  + + YE G+FV A  RGDG  GE V+  ++ +  +P+VL  + PE +EV
Sbjct: 120 FWCDPKMDGLALELVYENGRFVEALTRGDGEVGELVTEAMQTVRNLPKVLHGDAPERLEV 179

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEV   + DF  LN+ +     K +ANPRNAA+G +R+L+ +   +R L F  +G G  
Sbjct: 180 RGEVIFRRRDFALLNERLRKENLKTFANPRNAAAGSIRQLDTSVTASRPLRFLAYGFGDV 239

Query: 247 SE---IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                       E++ ++R  GF    G R       + +YY  +   R +L Y+IDG+V
Sbjct: 240 RFGGVQPWSTYEEVMGRLRDFGFETPPGGRLCRGSEEVEAYYASLSEKRESLAYEIDGVV 299

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+++   Q+ LG  AR+PR+ ++ KF  +QA+T LLDI +Q+GRTG+LTPVA LEPVN+
Sbjct: 300 MKLNDLEAQEALGYTARAPRFAVAWKFPAQQATTLLLDITVQVGRTGVLTPVAELEPVNV 359

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG L++ ATLHNED I+            RD+R+GDRV+V+RAG+VIP+VV  +++ER P
Sbjct: 360 GGVLVSRATLHNEDEIR-----------NRDVRIGDRVVVQRAGDVIPEVVRAVLSERAP 408

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           D+QPF FP  CP C     R           A RC    +C A   + L HFVS+   +I
Sbjct: 409 DSQPFVFPHVCPSCGQAASRLEGE------VAWRCVNV-SCPAMIRQSLAHFVSKAGLDI 461

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG++ ++        +  ++ PAD+FTL+  +             G    T   DS++
Sbjct: 462 EGLGQRWIELLV----ASGRVKTPADLFTLRVDELLHY------ERMGVKLATKFVDSLD 511

Query: 544 KRRNISL-ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           + +  +  +R + +LGIRHVG + A++LA  Y                       L  +P
Sbjct: 512 RAKKEATLQRLLCALGIRHVGEQTAKTLAATYADMDVLRAA----------SPEELQNLP 561

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTLQ 659
            +G  +A +I  F+ +  N+  +  L +     + +     S     +  +K++FTG+L 
Sbjct: 562 DIGPEVASSIKAFFDDEPNVALLARLRELGLWPVRQEAAVASMPVGPLAGQKILFTGSLS 621

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            I R KAQ+     GA ++  +SR+ ++++VGD PGSK EKAQ LG++I++E  FL LLQ
Sbjct: 622 -IPRSKAQQMAENAGAEIAGSVSRRLNLLVVGDEPGSKREKAQALGIRIVDEAGFLALLQ 680

Query: 720 QYNTTLRIHDDD 731
             N       ++
Sbjct: 681 ADNEVTASSSEN 692


>gi|218767787|ref|YP_002342299.1| putative DNA ligase [Neisseria meningitidis Z2491]
 gi|166216217|sp|A1IQR7|DNLJ_NEIMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|121051795|emb|CAM08101.1| putative DNA ligase [Neisseria meningitidis Z2491]
 gi|319410038|emb|CBY90372.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Neisseria
           meningitidis WUE 2594]
          Length = 841

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 249/838 (29%), Positives = 379/838 (45%), Gaps = 159/838 (18%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D     
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L     PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMLKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303
                 A+   + L   + LGF + NG          V  + E    +    PY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLTFYEQMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DI 510
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +       +   DI
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVLHFADLYRLDI 542

Query: 511 FTLQRRQQTSTTKIENILGFGD----------------VSVTNLYDSINKRRNISLERFI 554
            TLQ+ ++T+   +                            N+   I   +   L RF+
Sbjct: 543 PTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPVKWAENILAGIESGKTPELARFL 602

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQ--------------------EINNIIAHNNDD 594
           F+LGIRHVG   A++LA+ + + +   +                          A     
Sbjct: 603 FALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM 662

Query: 595 WLSLIR--------------------------VPL--VGDIIAQAIVE------------ 614
              L+                           +P   + +  AQA+ E            
Sbjct: 663 IDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQND 722

Query: 615 ---------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGTLQK 660
                    +   P+N   +E L    +      E    S      +  K  V TGTL  
Sbjct: 723 KALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPT 782

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV I++E + L LL
Sbjct: 783 LKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSILSEAELLTLL 840


>gi|71082725|ref|YP_265444.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1062]
 gi|123775550|sp|Q4FPL3|DNLJ_PELUB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71061838|gb|AAZ20841.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 676

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 255/715 (35%), Positives = 397/715 (55%), Gaps = 43/715 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +    E          H+  YY  +KPI+ D E+D LK+    +   +  L      
Sbjct: 1   MNDKDLEIEYLKKIDLFQRHNKHYYDKNKPIVSDQEFDLLKKDIIDLERKYKFLK---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P   IG + + +  K+ H +P LSL   +N EDL+ F  +I  F   KD N+I ++ E
Sbjct: 58  YSPTKSIGFKPSKNFQKIKHKVPMLSLGNAFNEEDLKNFEKKIINFLSLKDVNTIEYSAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PKIDG   ++ Y  GK      RGDG+ GED++  ++ I  IP  +   N P+ I++RGE
Sbjct: 118 PKIDGISASLIYIDGKLTKGLSRGDGNEGEDITQNLKTIKDIPLEITKSNFPKEIDIRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249
           V+I  NDF  +        +  +ANPRNAASG LR+ N        L F  +  G   ++
Sbjct: 178 VFIENNDFKKI--------KDKFANPRNAASGSLRQKNSLITAKIPLKFIAYTYGYEKKM 229

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             K Q   L+ ++  GF  N   ++      ++  + E++  R  L +DIDG+VYKV++F
Sbjct: 230 NIKNQTSFLENLKLWGFKTNPFNKKIIGVKNLMLNHKELEEKRKELAFDIDGIVYKVNDF 289

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQK+LG  A +PRW I+HKF+   + + +++I+IQIGRTG LTPVA+++PVNIGG +++
Sbjct: 290 DLQKRLGFAANAPRWAIAHKFSANSSISEIMNIEIQIGRTGALTPVAKIKPVNIGGVIVS 349

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNED I             +DIRVGD V V+RAG+VIP VV + + +R  +++ F 
Sbjct: 350 NATLHNEDEI-----------VRKDIRVGDTVTVERAGDVIPHVVSVDLKKRKQNSKKFI 398

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           FP  CP C S+ ++D N  T +  A  RC + G  C    +ER+KHFVS+DAFNI+G GK
Sbjct: 399 FPLKCPSCGSKTIKDYNETTKRQDAVRRCASEGFECEKIAIERIKHFVSKDAFNIDGFGK 458

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++ F+  +     +R+P DIF L      +  KIE + G+G +SV NL  SI +++NI
Sbjct: 459 KIVENFWNLK----LVRLPQDIFKL------NYNKIEELEGWGKLSVANLRFSIEEKKNI 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SLERFI+SLGIRH+G E A+ +A++  +  NF +           +  SL  +  +G   
Sbjct: 509 SLERFIYSLGIRHIGQENAKLIARHLKTASNFFRLS------GEKNIESLSNIDGIGITQ 562

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            Q+I +F+ N  N+  +  L K +         N +  ++NK  + TG L  I R +A+ 
Sbjct: 563 IQSIKKFFLNKTNLKVLSELEKNLLIKDVILINN-NGLLKNKTFMLTGKLNGISRAEAKS 621

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            + Q    + + +++K D +I GD P   K+  A++  +KI+N+ ++L +L +  
Sbjct: 622 LIEQNSGKIISNVNKKLDYLIAGDKPTLKKINTAKEWNIKIINQTEWLKMLNKSG 676


>gi|284929444|ref|YP_003421966.1| DNA ligase, NAD-dependent [cyanobacterium UCYN-A]
 gi|284809888|gb|ADB95585.1| DNA ligase, NAD-dependent [cyanobacterium UCYN-A]
          Length = 682

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 209/721 (28%), Positives = 350/721 (48%), Gaps = 47/721 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++    +K +  L + +   +  Y+  ++ I+ DS YD L R+   +    P+L      
Sbjct: 1   MNNLNIQKTIIKLRKHLQQANYAYHVLNESIMEDSVYDQLYRQLYNLEQRNPNLI---SS 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    ++G +  L    V H IP  SLE  +N+++L  +  R  ++ + +++  I +  E
Sbjct: 58  DSVTQRVGEKPALHFNSVKHDIPLYSLENAFNLQELEAWENRNQKYLKSQENQLIKYIAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGE 190
            KIDG+ +++ YE G       RGDG  GED++  IR I +IP  L+  + P I+ V GE
Sbjct: 118 LKIDGSALSLTYENGLLTRGLTRGDGIVGEDITQNIRTIFSIPLHLNLDDPPSIMHVNGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
            ++  ++F  +N +    G+  +ANPRNAA+G LR+L+   ++     F         + 
Sbjct: 178 AFLPLDEFKRINKQKQKEGKSLFANPRNAAAGTLRQLDSKIVSERKLQFFAYSLYADNLD 237

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K Q++ L+ ++  GF VN   R   +   + +Y+NE KS +  LPY  DG+V K++   
Sbjct: 238 IKSQWDTLKFLQECGFLVNPYYRLCKSLDTVTNYFNEWKSAKKHLPYMTDGVVIKINSHI 297

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQK+L    R PRW I+ K+  ++ ST + DI    GRTG +TP+A + PV +GG ++  
Sbjct: 298 LQKELAYTQRFPRWAIALKYPAEEISTVVEDIIFNTGRTGAVTPMAVMNPVLLGGTIVRK 357

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            I +GD V +++AGE+IP+V+ ++   RH   + F  
Sbjct: 358 ATLHNIDRIAQL-----------GICIGDTVTIRKAGEIIPEVIRVLKTLRHHKTKVFQI 406

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
              CP C S +V   N       A  RC    +C A     L H+ SRDA +I GLG++ 
Sbjct: 407 SERCPKCNSMLVSFSNE------AVVRCIN-NSCPAILKGNLIHWSSRDAVDISGLGEKI 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D    +      +   +D++ L      +  ++ N+   G  S  NL  SI   +  S 
Sbjct: 460 IDLLISN----GLVNSISDLYHL------NFQEVSNLERMGIKSAENLIKSIESSKTKSW 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + ++ LGI HVG   A  L + + S Q   Q            + +L+ +  +G  +A 
Sbjct: 510 TKVLYGLGIHHVGYTTAILLTENFSSVQQLLQAP----------YDTLVTIKGIGKEVAY 559

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I  ++    N   +  L K       +       K       N   V TG+L  ++R +
Sbjct: 560 SIRSWFSLEENQKLISELDKNGFVLENKNLGINQNKPDKQIFFNITFVITGSLNTLKRSE 619

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            +  +   G  V   +++KT+ I+VG+NPGSKL +  +L +  +NE  FL +L+  N  +
Sbjct: 620 IKNLIENFGGKVVNSVTKKTNYILVGENPGSKLAEGMKLNIIRLNETDFLRILKDANIEI 679

Query: 726 R 726
            
Sbjct: 680 N 680


>gi|296128966|ref|YP_003636216.1| DNA ligase, NAD-dependent [Cellulomonas flavigena DSM 20109]
 gi|296020781|gb|ADG74017.1| DNA ligase, NAD-dependent [Cellulomonas flavigena DSM 20109]
          Length = 824

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 221/821 (26%), Positives = 351/821 (42%), Gaps = 125/821 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             + R   ++L ++I      YY    P   D+ YD   R  + +    P L     P+ 
Sbjct: 14  PAEVRHRWTALAEQIRADQFAYYVRDAPSSSDAAYDERMRELERLEDEHPGL---RTPDS 70

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG  +     V H    LSL+  ++ EDL  +  R+ R  +      + +  E K
Sbjct: 71  PTQQVGGTFSTEFTAVDHVERMLSLDNAFSREDLVAWAERVQRDLESTV--PVEYLCELK 128

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGE 190
           IDG  I + YEKG+ V AA RGDG +GEDV+  +R I TIP VL  +    P++IE+RGE
Sbjct: 129 IDGLAIALLYEKGRLVRAATRGDGRTGEDVTLNVRTISTIPDVLGGDPATHPDVIEIRGE 188

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V++  + F ALN+  +A GR P+ANPRNAA+G LR+ +P     R L  + HG+G  +  
Sbjct: 189 VFLPVDAFRALNEAQVAAGRAPFANPRNAAAGSLRQKDPRVTAARPLRMYAHGIGALTWG 248

Query: 250 F-----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                    Q ++   +   G P +   R   +   +          R  + ++IDG+V 
Sbjct: 249 DGRGTGIDRQSQVYDLLAGWGVPTSTHTRVVGSLDEVWDRVAHFGEHRHDVEHEIDGVVV 308

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVD+ +LQ++LG  +R+PRW I++K+  ++ +TRLL I++ IGRTG  TP A +EPV + 
Sbjct: 309 KVDDIALQRRLGATSRAPRWAIAYKYPPEEVNTRLLAIELGIGRTGRATPFAVMEPVLVA 368

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ +  ATLHN+D +K                  D V++++AG+VIP++V         D
Sbjct: 369 GSTVRQATLHNQDVVKVKGVRVG-----------DMVVLRKAGDVIPEIVGPAPQAPDDD 417

Query: 425 AQPFSFPS--FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
                +     CP C + +         +     RC     C AQ   RL+H  SR AF+
Sbjct: 418 VPRVEWHMPADCPECGTPLRPMR-----EGDVDLRCPNAQGCPAQVRGRLEHIGSRGAFD 472

Query: 483 IEGLGKQQLDFFFKSEDPAF-----------SIRIPADIFT------------------- 512
           IE LG+       + E P              +  PAD                      
Sbjct: 473 IEVLGEVTAAALTQPEVPEVPPVPNEAYLFDLVGYPADAPPEEVERVRSASLARLAEVEV 532

Query: 513 --------LQRRQQTSTTKIENILGFGDVSV-----------------------TNLYDS 541
                   L +     T +                                     L D 
Sbjct: 533 VVRDAETGLPKEDADGTVRRRTPFRRTLKHTRAQRAAAEAAGRTLPDWEPSEAARTLLDQ 592

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR- 600
           ++  +   L R I +L IRHVG   AR+LA+ + S       ++       D     +  
Sbjct: 593 LDLAKTKELWRAIVALSIRHVGPTAARALAQEFGSMAALRAVVDPTARGAVDAPQEAVDG 652

Query: 601 -------------------------------VPLVGDIIAQAIVEFYQNPRNICAVEALL 629
                                          V  VG  IA+++++++  P +   V+   
Sbjct: 653 GAVADDAVEGSIADEDGAPAADAAAVARLAGVEGVGPTIARSLLDWFAEPWHREIVDRWA 712

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
                     +++    +E   +V TG+L++  R  A+E +   G   S  +SRKTD ++
Sbjct: 713 AAGVVMQDAVDESTPRTLEGVTVVVTGSLERFSRDGAKEAILGRGGKASGSVSRKTDFVV 772

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730
           VG+N GSK  KA++LG++I++E  F  LL      +   D+
Sbjct: 773 VGENAGSKETKARELGLRILDEAGFEALLAHGPGAVVPPDE 813


>gi|55379625|ref|YP_137475.1| NAD-dependent DNA ligase LigA [Haloarcula marismortui ATCC 43049]
 gi|74516349|sp|Q5UY84|DNLJ_HALMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|55232350|gb|AAV47769.1| DNA ligase [Haloarcula marismortui ATCC 43049]
          Length = 691

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 234/718 (32%), Positives = 360/718 (50%), Gaps = 49/718 (6%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
              +E +  E AR++   L + + YHD  YY  + P+I D  YDAL  R   +  AF   
Sbjct: 20  FESVEDVDAETAREQADQLREALRYHDYRYYVENDPVIGDRAYDALFSRLQRLESAF--- 76

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              +    P  ++GGE    L  V H     S+++     D+R+F +R+        D  
Sbjct: 77  -NLDTDGSPTQRVGGEPLDELPDVEHVARMGSIDQGGEEADVREFDSRVRNGL----DGD 131

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + +  EPK DG  + I YE G +  AA RGDG  GEDV+  +R I ++P+ L  + P+ +
Sbjct: 132 VQYFCEPKFDGLSVEIVYEDGVYQRAATRGDGEVGEDVTENVRTISSVPQRLRGDYPDFL 191

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245
            VRGEVYI ++ F   N E +  G  P+ANPRNAA+G LR+L+P+               
Sbjct: 192 AVRGEVYIPRDAFTTFNRERVERGEDPFANPRNAAAGTLRQLDPSVTAERPLSIFFFGVL 251

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            + +  +   E+ ++    G  V +     +     + Y NE +  R  L Y+IDG+V K
Sbjct: 252 DASVDFESHSELHERFPEWGLRVCDRTAVVDDIDAAIDYRNEQQQARDDLDYEIDGVVIK 311

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+      LG  AR+PRW  ++KF  ++  T + DI +Q+GRTG LTPVA ++PV +GG
Sbjct: 312 VDDMDACDDLGSTARAPRWAFAYKFPARKEETTVRDIVVQVGRTGRLTPVALMDPVEVGG 371

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ A+LHN   I  L            + VGDRV +KRAG+VIP VV+++ ++     
Sbjct: 372 VTVSRASLHNPSLIADL-----------GVDVGDRVRIKRAGDVIPDVVEVLDDDGDGH- 419

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
             F FP  CP C S V  D             CTGGL C AQ+   ++H+ SRDA +IEG
Sbjct: 420 --FEFPETCPACDSPVEHD--------GPMAFCTGGLTCPAQRERSVEHYASRDALDIEG 469

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G++ +         A  +  PAD++ L     T       + G+G+ S  NL D ++  
Sbjct: 470 VGEKAVQQLLD----AGLVSDPADLYDLTVEDLTG------LEGWGETSARNLVDGMDSA 519

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R   L  F+ +LGI  VG   AR+LA+ + +++            +  D  +   VP VG
Sbjct: 520 REPPLADFLVALGIPEVGTVTARNLAQEFGTFEAILDA------ADEGDTDAFEAVPDVG 573

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +A++IVEF++   N   ++ LL  V P     E+     ++ +  VFTG+L    R +
Sbjct: 574 QTVARSIVEFFEGEGNRAVIDRLLDHVEPQAA--EETDGDALDGQTFVFTGSLDGYTRGE 631

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           AQE V +     ++ +S  TD +++GDNPG  K + A    V+ + E++F  LL    
Sbjct: 632 AQELVERNDGSATSSVSGNTDYLVLGDNPGQRKQDDAAAHDVETLTEDEFEELLDDAG 689


>gi|319956399|ref|YP_004167662.1| DNA ligase, nad-dependent [Nitratifractor salsuginis DSM 16511]
 gi|319418803|gb|ADV45913.1| DNA ligase, NAD-dependent [Nitratifractor salsuginis DSM 16511]
          Length = 657

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 221/704 (31%), Positives = 362/704 (51%), Gaps = 57/704 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E      ++      YY    P + D  YD L R  +A   A PD     DP  P  ++
Sbjct: 6   QEYEEAVAKLKRWAYAYYVEDNPEVTDEVYDRLYREVEAYEKAHPDEI---DPTSPTQRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G  +     K  H     S+E ++N  +  ++  RI + +  +      + +EPK DG  
Sbjct: 63  GAPLKEGFKKAKHLSRMWSMEDVFNAAEFEEWFNRIDKKYPGE-----RYYIEPKFDGAS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + YE G    A  RGDG  GEDV+A  + I +IP  L +    +IE+RGEV ++  +F
Sbjct: 118 LNLIYENGLLKQAITRGDGVEGEDVTANAKTIRSIP--LDIAHKSLIEIRGEVLMTIEEF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
             +N E IA G +P+ANPRNAA+G LR+L+P+    R L F   G+G  +++  +   ++
Sbjct: 176 ERINKERIAAGEQPFANPRNAAAGSLRQLDPSITAKRNLIFQPWGVG-VNDLDYEYLSDL 234

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           +  +  LGF          T   I + Y ++  +RS LP  +DG+V KVD  +LQ+ LG 
Sbjct: 235 MGYVYDLGFRKPPLREVKRTPKEIEAVYEKLDKMRSQLPVMLDGMVVKVDRIALQEILGY 294

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             + PRWM+++KF   +  TRLLD+  Q+GRTG++TPVA LEPV I G ++  ATLHN D
Sbjct: 295 TVKYPRWMVAYKFPAVEKQTRLLDVIPQVGRTGVITPVAVLEPVEIEGVVVERATLHNYD 354

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI+ L           DIR+GD V V R+G+VIPK++ ++   R    +P   P+ CP+C
Sbjct: 355 YIEKL-----------DIRIGDMVTVIRSGDVIPKIIKVLPQYRTGKEKPIQRPTRCPVC 403

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S V+ +                 L+C A+ +  + +F S+   NI+GLG++ +   +  
Sbjct: 404 GSEVLDEGPLVK---------CQNLSCPARVVNSIIYFASKQCMNIDGLGEKIVQQLYD- 453

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  ++   D++ L++           + GFG+     L ++I   +     RF+ +L
Sbjct: 454 ---AGLVKDVEDLYHLKKEDL------LKLEGFGEKKAEKLLEAIEASKGRECWRFVNAL 504

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI H+G   ++ + + +             +   + D  +L+ +   G+ +A + +EF +
Sbjct: 505 GIEHIGEVASKKICEKFG------------LDFIHADKEALLSIEGFGEEMANSFLEFMR 552

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
              N   V+ L++ V P   + E+ V S    K +V TG ++K  R + +E +  LGA V
Sbjct: 553 V--NGEKVKRLMEIVRPKPPQKEEVVESPFTGKTVVLTGAMKK-PRSEIKEMLEHLGAHV 609

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +  +S KTD +I G++PGSK +KA+QLGV ++ EE+   +L + 
Sbjct: 610 TNTVSHKTDYVIYGEDPGSKFDKAKQLGVTLLPEEKMWEMLGEQ 653


>gi|115314545|ref|YP_763268.1| DNA ligase [Francisella tularensis subsp. holarctica OSU18]
 gi|122325430|sp|Q0BMQ3|DNLJ_FRATO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|115129444|gb|ABI82631.1| DNA ligase (NAD(+)) [Francisella tularensis subsp. holarctica
           OSU18]
          Length = 678

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 256/713 (35%), Positives = 391/713 (54%), Gaps = 54/713 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L+  + +  +  L   +S     Y+   KPII DS+YD L R    + +  P        
Sbjct: 14  LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI--- 70

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N  L+++GGE+      + H     SL  ++++E+LR F  +I           I    E
Sbjct: 71  NSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIE--------YDIELECE 122

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  I+I Y+ GKF YA  RGDG  GE VS  ++ I  +P    + N PE +EVRGE
Sbjct: 123 PKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGE 182

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--S 247
           + + K  FL+LN+ M     K +ANPRNAA+G +R L+      R L  + +G+G     
Sbjct: 183 IILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKD 242

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
            ++ + Q+E++Q ++  GF +++ +  A  F  +  Y+++M   R+ L YDIDGLV+KV+
Sbjct: 243 FVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVN 302

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              LQ  +G  AR P+W I++KF  ++  + +L+++ Q+GRTG +TPVARL+PV +GG +
Sbjct: 303 NIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVI 362

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN + IK            +DIRVGDRV+V+RAG+VIP+VV  +   R  DAQ 
Sbjct: 363 VSNATLHNINEIKS-----------KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQI 411

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP+C S++      +     A +RCTGG  C AQ  ERLKHFVSR A +I+ LG
Sbjct: 412 VEMPTNCPVCDSKI------ENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLG 465

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + ++        A  I+ PADI+ L   Q T       +      S  N+ DSI K + 
Sbjct: 466 AKLIEQLV----AANLIKYPADIYKLNFEQLTG------LERMAAKSSQNVLDSITKSKE 515

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            SL RFIF++GI+ +G   + +LA ++ S ++F              +  LI +  VG+I
Sbjct: 516 PSLARFIFAIGIKDIGEVSSDALANHFGSLESFRDA----------KFEELIEINYVGEI 565

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           IA  IV F+ +  NI  VE  L       +  + E   +     K +V TG+ +   R +
Sbjct: 566 IANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTE 625

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +  +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ E+    LL
Sbjct: 626 LTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVILEDNLKDLL 678


>gi|254804544|ref|YP_003082765.1| DNA ligase [Neisseria meningitidis alpha14]
 gi|254668086|emb|CBA04596.1| DNA ligase [Neisseria meningitidis alpha14]
          Length = 841

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 248/842 (29%), Positives = 377/842 (44%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D     
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  I+ +  IP  L     PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303
                 A+   + L   + LGF + NG          V  + E    +    PY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550
            L         +  +                               N+   I   +   L
Sbjct: 539 RLDIPTLQKMKEAADKTVAESDQMPSEDSSVGASGKHKKPPTKWAENILAGIESGKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--------------------EINNIIAH 590
            RF+F+LGIRHVG   A++LA+ + + ++  +                          A 
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLEHVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658

Query: 591 NNDDWLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614
                  L+                           +P   + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINEAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|325141882|gb|EGC64324.1| DNA ligase, NAD-dependent [Neisseria meningitidis 961-5945]
          Length = 841

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 251/838 (29%), Positives = 384/838 (45%), Gaps = 159/838 (18%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186
           + +EPK DG  I++ Y  G  + AA RGDG +GEDV+  I+ +  IP  L     PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLIQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTF-HGIVSYYNEMKSIRSTLPYDIDGLV 303
                 A+   + L   + LGF + NG          ++++Y  M+  R  LPY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYGHMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 QETAVAVSDGIGHRQDDLFAEAPAANQTQSVPLYKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DI 510
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +       +   DI
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQDLVLHFADLYRLDI 542

Query: 511 FTLQRRQQTSTTKIENILGFGD----------------VSVTNLYDSINKRRNISLERFI 554
            TLQ+ ++T+   +                            N+   I   +   L RF+
Sbjct: 543 PTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPVKWAENILAGIESGKTPELARFL 602

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQ--------------------EINNIIAHNNDD 594
           F+LGIRHVG   A++LA+ + + +   +                          A     
Sbjct: 603 FALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM 662

Query: 595 WLSLIR--------------------------VPL--VGDIIAQAIVE------------ 614
              L+                           +P   + +  AQA+ E            
Sbjct: 663 IDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQND 722

Query: 615 ---------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGTLQK 660
                    +   P+N   +E L    +      E    S      +  K  V TGTL  
Sbjct: 723 KALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPT 782

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV I++E + L LL
Sbjct: 783 LKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSILSEAELLTLL 840


>gi|238926785|ref|ZP_04658545.1| DNA ligase (NAD(+)) [Selenomonas flueggei ATCC 43531]
 gi|238885317|gb|EEQ48955.1| DNA ligase (NAD(+)) [Selenomonas flueggei ATCC 43531]
          Length = 677

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 218/718 (30%), Positives = 352/718 (49%), Gaps = 45/718 (6%)

Query: 12  LSI-EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           +S  ++ + ELS L ++I  +   YY  ++  I D ++D L  R   +  A+P+L     
Sbjct: 1   MSKIDEVKTELSELRRKIRKYSKQYYDDNESEISDYDFDMLMMRLKKLEAAYPELI---T 57

Query: 71  PNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            N P   +GG     +   V H +P LSL+ +++ E++R F+  I          +  F 
Sbjct: 58  KNSPTRTVGGSAQREVGVLVPHDVPMLSLQDVFSEEEIRAFVDNI-----LAHFPAAEFI 112

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHS-GEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           +E KIDG  + +RYE G    A  RGDG   GEDV+A  R I  + + L   +P   EVR
Sbjct: 113 VEEKIDGLSLALRYENGVLARAITRGDGIVQGEDVTANARMIDDVVQELHDALPY-FEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247
           GEVY+ +  F  +N+    +G KP+ANPRN A+G LR+L+      R L+ FV  L ++ 
Sbjct: 172 GEVYMKRAAFAEVNERQELLGLKPFANPRNCAAGTLRQLDSRITKERRLSMFVFNLQRSD 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   E    M+  G       R       +     E+   R +LPYDIDG V KV+
Sbjct: 232 GRMFSSHTEAYAFMQAQGIKTIANYRVCRMAEEVWDAIEEIGVRRGSLPYDIDGAVVKVN 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            F+++++LG  A++PRW I++K+  ++  T L DI++ +GRTG +TP A  +PV + G  
Sbjct: 292 SFAMREELGVTAKAPRWAIAYKYPPEEKETVLRDIELSVGRTGRITPTAVFDPVGLCGTR 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATLHN+DYI  L           DIR+GD +LV ++GE+IP+V  ++  +R  +++P
Sbjct: 352 VERATLHNQDYIDSL-----------DIRIGDTILVYKSGEIIPRVKAVLKEKRPQNSRP 400

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P  CP+C +  VR+ +       A  RC   + C AQ    L +FVSR A +I+GLG
Sbjct: 401 YVIPDVCPVCGAHAVREAD------TADMRCQNPV-CPAQIENHLLNFVSRSAMDIKGLG 453

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
              +     +E     I   ADIF+L   ++               SV     +I   + 
Sbjct: 454 AAAVIALVHAE----YIHDIADIFSLHMHREELIASGLI---GRAKSVDQRLAAIEASKQ 506

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              ER +  LGI  +G   A +L + + S     +          +    ++ VP +G+I
Sbjct: 507 NPPERLLTGLGIAGIGRAAAAALMQEFSSIDALQEA-------ARESPERILAVPDMGEI 559

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            AQ + EF+ +      ++ L        G   + V + +  K  V TGTL  + R +  
Sbjct: 560 TAQKLTEFFSSASACALLDRLRAAGVNFAGTRTERVGAALAGKSFVITGTLPTLSREECS 619

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
             +T  G +V   +S+KTD ++ G+  G KL+KA+ L + I++E     ++ +    +
Sbjct: 620 ALITAHGGLVKGSVSKKTDYLVAGEAAGRKLKKAEDLSIPILDEAALRAMISEEKDGV 677


>gi|256383839|gb|ACU78409.1| DNA ligase, NAD-dependent [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256384670|gb|ACU79239.1| DNA ligase, NAD-dependent [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296455996|gb|ADH22231.1| DNA ligase, NAD-dependent [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 668

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 228/712 (32%), Positives = 385/712 (54%), Gaps = 46/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S ++A   ++ L+++++     YY    P + D EYD   +   ++   +P+L  S   
Sbjct: 1   MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDIEYDLALKELISLETLYPELITS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG ++    K+TH  P LSL  +++ ++   F T+I +     D+    +  E
Sbjct: 58  DSPSQKVGGMVSEKFLKITHKTPMLSLGNVFSFDEFLDFNTQISKVSNTLDNQ---YVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE G  V AA RG+G  GEDV+  ++ I +IP  L +N  E +EVRGE+
Sbjct: 115 LKIDGLSISLVYENGSLVSAATRGNGVVGEDVTINVKTIKSIP--LKINKKERVEVRGEI 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           Y+SK +F  +N + +      + NPRNAA+G LR+L+   +             + +   
Sbjct: 173 YLSKAEFEKINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYYISDDSNN 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             QY+ + K+  LGF  N           I +Y ++  ++++ L Y IDG+V+K+++ +L
Sbjct: 233 LTQYQSILKLNELGFKTNKETMLCKNLDEIKAYIDKYTNLKNDLDYQIDGIVFKINDKNL 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q  LG  ++ P+W I++KF  +   T+LLDI   +GRTG +T  A+LEPV + GA I+ A
Sbjct: 293 QNSLGFTSKIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGATISAA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TL+N +YIK            +D+R+   V +K+AG+VIP+V++ I +E   + + F   
Sbjct: 353 TLNNAEYIKS-----------KDLRINSIVKIKKAGDVIPEVIEAIKDETFYNLEVFQPI 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            +CP C S + ++ N          +     +CS + L  L+HF SR+A NI  LG + L
Sbjct: 402 LYCPNCHSLLEKNENE-------VDQFCINSSCSMKILRSLQHFSSREAMNIVSLGDRSL 454

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F  +     I+  +DI+ L+  +     +I  I  FG  S  NL DSIN  +N SLE
Sbjct: 455 EILFNLK----IIQNISDIYRLEEYKD----EILAIENFGLKSYLNLIDSINMSKNNSLE 506

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +F LGIRH+G++ A+ LA+ Y +  N  +            +  LI++  +G+ +A +
Sbjct: 507 KVLFGLGIRHIGSKTAKILARKYQNIDNLMKA----------SYDELIQINSIGESLALS 556

Query: 612 IVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I+++++   N+  ++ L    ++ +    + N  S I NK  V TGTL +  R + +  +
Sbjct: 557 IIDWFKIEDNLKLIDELKSFNINFNYLGAKINSDSIIANKSFVITGTLTR-PREEFKTLI 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
                 V   +S++TD ++ G+N GSKLEKA++LGVKI++E+QF  LL+   
Sbjct: 616 ENNAGKVIGSISKQTDYLLAGNNVGSKLEKAKKLGVKIIDEQQFFDLLKSEK 667


>gi|330718928|ref|ZP_08313528.1| DNA ligase, NAD-dependent [Leuconostoc fallax KCTC 3537]
          Length = 681

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 239/717 (33%), Positives = 374/717 (52%), Gaps = 51/717 (7%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
            +   +  L+  QA++E++ L+ +++ +   YY+   P + D  YDA   R   +  AFP
Sbjct: 3   PEFKAVSELTTAQAQQEIAKLQDDLTRYGVEYYEDDNPSVEDHVYDAFYARLVDLEAAFP 62

Query: 64  DLARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
                  P  P  ++GG  +   L K+TH +P LSL  ++++E+L+ +  R  +    + 
Sbjct: 63  QFM---TPESPTQRVGGTNVKSELTKITHPVPMLSLGDVFSLEELQDWDARTTKALGFQS 119

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
           D    + LE KIDG  + + YE G+ V A+ RG+G  GEDV+A ++ I  IP+ LS  + 
Sbjct: 120 D----YNLELKIDGLAVALDYENGELVQASTRGNGTIGEDVTANVKTIQAIPQRLSEPL- 174

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
             IEVRGE+Y+ K  F  LN +    G  P+ANPRNAA+G LR+L+      R L+ FV+
Sbjct: 175 -TIEVRGEIYMPKKSFAKLNQQRELEGLAPFANPRNAAAGSLRQLDAKVTKKRELSAFVY 233

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
                  + A+ Q   LQ+   LG P N   +  +    I SY       R TL Y IDG
Sbjct: 234 YTADFETLGAETQSGALQRFAALGLPTNTTNQVISVMSYISSYITHYTQQRDTLDYGIDG 293

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KV+   LQ  LG   + PRW I++KF  ++A T + DI+  +GRTG +TP A ++PV
Sbjct: 294 VVVKVNALDLQLDLGNTVKIPRWAIAYKFPPEEALTTVRDIEWTVGRTGAVTPTAVMDPV 353

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G ++  A+LHN DY+             + IR+GD V + +AG++IP+V  +I  +R
Sbjct: 354 QLAGTVVKRASLHNPDYL-----------NAKGIRIGDTVTLHKAGDIIPEVGQVIEEKR 402

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             D+ P+  P  CP CQS +V            A RC     CSAQ  ERL HF SR+A 
Sbjct: 403 SIDSVPYVIPVMCPACQSELVHIEGE------VALRCINPF-CSAQIQERLTHFASRNAM 455

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI+G+G + +    K+      I+  A I+ L+  Q  S      +  F + S  NL+++
Sbjct: 456 NIDGMGPRVIAQLLKNN----LIQDVASIYALKEEQLLS------LDKFKEKSANNLFNA 505

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I + +  SLER +F LGIR VGA+ A+ +AK +          +            +  +
Sbjct: 506 IQQSKQNSLERLLFGLGIRMVGAKAAKLIAKKFKDLTQLMHTTSA----------DIASI 555

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQ 659
             +G  IA ++V+F+  P+    V+ L+        +   E + +S    KK+V TG L+
Sbjct: 556 DGIGSTIADSMVQFFSTPQAQQLVQDLMAAGVNGKYLSDVEIDENSFFFGKKIVLTGKLE 615

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++ R    +++   GA V   +S KTD++I G + GSKL+KA  LG+ +  E+QF+ 
Sbjct: 616 QMSRPVIAKWLENHGASVVGSVSAKTDLVIAGHSAGSKLDKATGLGIPVWQEQQFID 672


>gi|325135742|gb|EGC58354.1| DNA ligase, NAD-dependent [Neisseria meningitidis M0579]
          Length = 841

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 248/842 (29%), Positives = 381/842 (45%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186
           + +EPK DG  I++ Y  G  + AA RGDG +GEDV+  I+ +  IP  L     PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLIQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTF-HGIVSYYNEMKSIRSTLPYDIDGLV 303
                 A+   + L   + LGF + NG          ++++Y  M+  R  LPY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYGHMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 QETAVAVSDGIGHRQDDLFAEAPAANQTQSVPLYKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550
            L         +  +                               N+   I   +   L
Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPTKWAENILAGIESGKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--------------------EINNIIAH 590
            RF+F+LGIRHVG   A++LA+ + + +   +                          A 
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAE 658

Query: 591 NNDDWLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614
                  L+                           +P   + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|313681943|ref|YP_004059681.1| DNA ligase, nad-dependent [Sulfuricurvum kujiense DSM 16994]
 gi|313154803|gb|ADR33481.1| DNA ligase, NAD-dependent [Sulfuricurvum kujiense DSM 16994]
          Length = 676

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 207/713 (29%), Positives = 354/713 (49%), Gaps = 58/713 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +  +  +++  +   YY    PI  D EYD L  +  A  H  P    S   + P  +
Sbjct: 3   QTDYKNAVEQLKKYSYHYYVLDDPITTDEEYDILYHKVVAYEHEHPSEIIS---DSPTQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G        K  H     SLE +++ E+L  ++ RI +         + F  EPK DG 
Sbjct: 60  VGDVPQDKFDKAQHLSRMWSLEDLFDREELETWVNRITK-----GYGDVRFYCEPKFDGA 114

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + Y+KG  V A  RGDG  GEDV+   + I +IP  L +     IE+RGEV I K D
Sbjct: 115 SLNLIYDKGVLVQAITRGDGVEGEDVTQNAKTIQSIP--LRIEYKGRIEIRGEVVIFKED 172

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N E    G   +ANPRNAA+G LR+L+     +R L F  +G+G  + +  K   E
Sbjct: 173 FEKINLERSRNGESLFANPRNAAAGSLRQLDTRITASRRLVFMPYGIG-ANTLEIKNLSE 231

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  LGF   +      +   I ++Y+EM+  R      +DG+V KVD  ++Q +LG
Sbjct: 232 RMEWVYGLGFRNPHMTHLCESADQIETFYHEMRVERDNFAMLLDGMVIKVDSIAVQDELG 291

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW  ++KF   +  T L ++ +Q+GR+G++TPVA +EPV+I G  +  +TLHN 
Sbjct: 292 YTVKNPRWAAAYKFPAIEKLTTLKEVIMQVGRSGVVTPVAIVEPVDIEGVTVERSTLHNF 351

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+GD+V++ R+G+VIPK+V +I  ER    Q    P+ CP+
Sbjct: 352 DEIER-----------KDIRIGDKVIILRSGDVIPKIVKVITAERTGSEQVIPRPTQCPV 400

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++ +          A      + C A+ +  + +F S+   NI+GLG + ++    
Sbjct: 401 CGSELLDEG---------ALIKCQNMGCEARVVNSIIYFASKQCLNIDGLGDKIVEALHS 451

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   +D+F L   Q  S      + GF +    NL D+I   +     RFI +
Sbjct: 452 ----AGMVHEVSDLFGLTMDQLLS------LEGFKEKKSRNLLDAIAAAKGCDCWRFINA 501

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   +++L   + +            A +      ++ +   G  + ++I+EF 
Sbjct: 502 LGIEHIGEVASKTLCGAFGT------------AFDRSSREEILALEGFGGEMVESILEFV 549

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +   N   +E L   ++P+     +   +  + K +V TG++  + R   +  + +LGA 
Sbjct: 550 RV--NSEKIERLRSILNPAAPVKIEAAENPFKGKSVVITGSMS-VPRDHIKVMLEELGAK 606

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
           V++ +S+KTD ++ G++ G+K +KA +LGV ++ E +F  +  +   +  + D
Sbjct: 607 VASSVSKKTDYVVYGEDAGNKYDKAVELGVTLLTESEFREMC-EAGDSAPLPD 658


>gi|168216777|ref|ZP_02642402.1| DNA ligase, NAD-dependent [Clostridium perfringens NCTC 8239]
 gi|182381157|gb|EDT78636.1| DNA ligase, NAD-dependent [Clostridium perfringens NCTC 8239]
          Length = 662

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 209/711 (29%), Positives = 352/711 (49%), Gaps = 58/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +K +  L +E++ +   YY      + D +YD        +          + P  P 
Sbjct: 2   DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE----TGYKLPYSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIFFT 129
            ++G  +     K TH     SL+K   +E++R++  R  +F ++      ++   + + 
Sbjct: 58  QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFVEEHNRTSDEELPPLKYI 117

Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+ 
Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247
           GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G   
Sbjct: 176 GEAIMTTEAFEKYNSEA----ETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +D
Sbjct: 232 GAPFKTYMEMLNFIKVKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G  
Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATL+N D I             + +R+G  V V+R+ +VIP+++ ++        + 
Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C + +V +             C   L C  Q ++ + HF  R+A NI G  
Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++  +  F+  D    IR  +D++ L+        K+ ++  FG     NL D+I K ++
Sbjct: 452 EKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKSKD 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +LE F++SLGI +VG + A+ L K + S +N               +  L+ V  VGDI
Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLENAT----------FEELVSVQDVGDI 551

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++I+EF++  R +  +  LL          ++ + S    K +V TGTL+   R   +
Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVVVTGTLENYSRTSIK 611

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F  ++
Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662


>gi|169347054|ref|ZP_02865996.1| DNA ligase, NAD-dependent [Clostridium perfringens C str. JGS1495]
 gi|169296737|gb|EDS78866.1| DNA ligase, NAD-dependent [Clostridium perfringens C str. JGS1495]
          Length = 662

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 209/711 (29%), Positives = 353/711 (49%), Gaps = 58/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +K +  L +E++ +   YY      + D +YD        +          + P  P 
Sbjct: 2   DKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELLDLEKE----TGYKLPYSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIFFT 129
            ++G  +     K TH     SL+K   +E++R++  R  +F ++      ++   + + 
Sbjct: 58  QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKYI 117

Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           L  K DG  I + Y E G  V  A RG G  GEDV+A ++ I +IP  L ++  + +E+ 
Sbjct: 118 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEIH 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247
           GE  ++   F   N E       P  N RN A+G LR LN  +   R L+ F + +G   
Sbjct: 176 GEAIMTTEAFEKYNSEA----ETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKE 231

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               K   EML  ++  GFP+++ +R+  T   I    + ++ IR  L YDIDGLV  +D
Sbjct: 232 GAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAID 291

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV + G  
Sbjct: 292 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVT 351

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  ATL+N D I             + +R+G  V V+R+ +VIP+++ ++        + 
Sbjct: 352 VKRATLNNMDDIAR-----------KGVRLGAEVFVRRSNDVIPEIMGVVPES-LEGTKE 399

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C + +V +             C   L C  Q ++ + HF  R+A NI G  
Sbjct: 400 IEEPKVCPACGAHLVHE--------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFS 451

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++  +  F+  D    IR  +D++ L+        K+ ++  FG     NL D+I K ++
Sbjct: 452 EKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKSKD 501

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +LE F++SLGI +VG + A+ L K + S +N  +            +  L+ V  VGDI
Sbjct: 502 CTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVGDI 551

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           +A++I+EF++  R +  +  LL          ++ + S    K +V TGTL+   R   +
Sbjct: 552 VARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESLFMGKTVVVTGTLENYSRTSIK 611

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           E +  LGA VS  +S+KTD +I G+  GSK +KA+ LGV I++EE+F  ++
Sbjct: 612 EKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEFENMI 662


>gi|28211984|ref|NP_782928.1| NAD-dependent DNA ligase LigA [Clostridium tetani E88]
 gi|75541732|sp|Q891I0|DNLJ_CLOTE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28204427|gb|AAO36865.1| NAD-dependent DNA ligase [Clostridium tetani E88]
          Length = 668

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 196/714 (27%), Positives = 349/714 (48%), Gaps = 59/714 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+ ++ +  L +E++ +   YY    P + D EYD        +      +        P
Sbjct: 5   EEKKRRIHELIEELNKYAYEYYVLDNPTVSDKEYDKRYDELVNLEKETGFVLSY----SP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR------FWQKKDDNSIFF 128
             ++G  +     K TH     SL+K  NIE L+++I R  +         ++      +
Sbjct: 61  TQRVGDTVLTQFDKYTHKSRLWSLDKAQNIEQLKEWINRNEKIIMEYNRLNEETLPMPTY 120

Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            L  K DG  +   Y E G  V  A RG G  GED+++ ++ I  +P  L +    +IEV
Sbjct: 121 ILTKKFDGLTVNCTYDESGILVKGATRGTGIIGEDITSQVKTIKCLP--LRIANNNLIEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246
           RGE  ++K  F   N++       P  N RN A+G LR L+      R L+ F + +G +
Sbjct: 179 RGEAIMTKEAFDKYNEKA----EIPLKNLRNGAAGALRNLDVRETAKRNLSAFFYDIGYS 234

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K   EM+  +  +GFPV+  +++      I      ++ IR+ L YDIDG+V  +
Sbjct: 235 EGNEFKTYMEMIGFLISMGFPVDPYIKECKDIVEIKDEIKYIEDIRNELNYDIDGIVIAI 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +    ++ LG   + PRW I++KF  ++A+T+L+D++  +GR+G +TP A LE V +GGA
Sbjct: 295 NHIKTREVLGYTVKFPRWAIAYKFEAEEATTKLIDVEWNVGRSGRVTPTALLESVELGGA 354

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I  ATL+N D I             + +R+G  V ++R+ +VIP+++ ++ +    + +
Sbjct: 355 TIKRATLNNMDDIIR-----------KKVRLGAEVFIRRSNDVIPEIMGVVESS-LENTE 402

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP C+S+++ +             C   L+C  Q ++ L HF SR+A NIEG 
Sbjct: 403 EIKAPLKCPYCESKLINE--------GVHLFCENTLSCKPQLVKSLVHFASREAMNIEGF 454

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            ++  + F++      +I+   D++ +++    +      +  F +    N+ ++I   +
Sbjct: 455 SEKTAEQFYEE----LNIKSIGDLYRVKKEDLLT------LDKFKEKKADNIMNAIENSK 504

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L  FI++L I +VG + AR L K + +  N                  L  V  +G+
Sbjct: 505 KPKLSSFIYALSIPNVGVKTARDLVKSFKTLDNIKNAT----------IEELTSVKDIGE 554

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           I+A +++EF++      +++ LL+    P +   E    ++   K +V TGTL+   R++
Sbjct: 555 IVANSVIEFFKQENINESIKELLELGVTPIMDITEIKKDNKFNGKTIVVTGTLEGYTRNE 614

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +E +  LGA VS  +S+KTD ++ G+  GSK  KA +LG++I+ EE+F  ++ 
Sbjct: 615 IKEKLEALGAKVSGSVSKKTDFVLAGEEAGSKYNKAMELGIRIITEEEFNEMIN 668


>gi|308388851|gb|ADO31171.1| DNA ligase [Neisseria meningitidis alpha710]
 gi|325202538|gb|ADY97992.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240149]
 gi|325207712|gb|ADZ03164.1| DNA ligase, NAD-dependent [Neisseria meningitidis NZ-05/33]
          Length = 841

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 248/842 (29%), Positives = 376/842 (44%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D     
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  I+ +  IP  L     PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303
                 A+   + L   + LGF + NG          V  + E    +    PY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 QETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550
            L         +  +                               N+   I   +   L
Sbjct: 539 RLDIPTLQKMKETTDKTVAESDQTPSEGSSVGASGKHKKQPVKWAENILGGIESGKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--------------------EINNIIAH 590
            RF+F+LGIRHVG   A++LA+ + + +   +                          A 
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAE 658

Query: 591 NNDDWLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614
                  L+                           +P   + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|331703733|ref|YP_004400420.1| DNA ligase [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802288|emb|CBW54442.1| DNA ligase [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 668

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 226/712 (31%), Positives = 382/712 (53%), Gaps = 46/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S ++A   ++ L+++++     YY    P + D EYD   +   ++   +P+L  S   
Sbjct: 1   MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDIEYDLALKELISLETLYPELITS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG ++    K+TH  P LSL  +++ ++   F T++ +     D+    +  E
Sbjct: 58  DSPSQKVGGMVSEKFLKITHKTPMLSLGNVFSFDEFLDFNTQVSKVSNTLDNQ---YVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE G  V AA RG+G  GEDV+  ++ I +IP  L +N  E +EVRGE+
Sbjct: 115 LKIDGLSISLVYENGSLVSAATRGNGVVGEDVTINVKTIKSIP--LKINKKERVEVRGEI 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           Y+SK +F  +N + +      + NPRNAA+G LR+L+   +             + +   
Sbjct: 173 YLSKAEFEKINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYYISDDSNN 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             QY+ + K+  LGF  N           I +Y ++  ++++ L Y IDG+V+K+++ +L
Sbjct: 233 LTQYQSILKLNELGFKTNKETMLCKNLDEIKAYIDKYTNLKNDLDYQIDGIVFKINDKNL 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q  LG  ++ P+W I++KF  +   T+LLDI   +GRTG +T  A+LEPV + GA I+ A
Sbjct: 293 QNSLGFTSKIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGATISAA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TL+N +YIK            +D+R+   V +K+AG+VIP+V++ I +E   + + F   
Sbjct: 353 TLNNAEYIKS-----------KDLRINSIVKIKKAGDVIPEVIEAIKDETFYNLEKFKPI 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            +CP C S + ++ N          +     +CS + L  L+HF SR+A NI  LG + L
Sbjct: 402 LYCPNCHSLLEKNENE-------VDQFCINSSCSMKILRSLQHFSSREAMNIVSLGDRSL 454

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F        I+  +DI+ L+  +     +I  I  FG  S  NL DSIN  +N SLE
Sbjct: 455 EILFN----LNIIKTISDIYRLEEYKD----QILEIENFGLKSYLNLIDSINMSKNNSLE 506

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +F LGIRH+G++ A+ LA+ Y +  N  +            +  LI++  +G+ +A +
Sbjct: 507 KVLFGLGIRHIGSKTAKILARKYQNIDNLMKA----------SYDELIQINSIGESLALS 556

Query: 612 IVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I+++++   N+  +  L    ++ +    + N  S I NK  V TGTL +  R + +  +
Sbjct: 557 IIDWFRIEDNLKLINELKSFNINFNYLGAKINSDSIIANKSFVITGTLTR-PREEFKTLI 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
                 V   +S++TD ++ G+N GSKLEKA++LGV I++E+QF  LL+   
Sbjct: 616 ENNAGKVIGSISKQTDYLLAGNNVGSKLEKAKKLGVTIIDEQQFFDLLKSEK 667


>gi|325133819|gb|EGC56475.1| DNA ligase, NAD-dependent [Neisseria meningitidis M13399]
          Length = 841

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 247/842 (29%), Positives = 378/842 (44%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+      P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPEFKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  I+ +  IP  L     PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           VRGEV + K DF+ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFVALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303
             +   A+   + L   + LGF + NG          V  + E    +    PY+IDG+V
Sbjct: 260 QQDGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550
            L         +  +                               N+   I   +   L
Sbjct: 539 RLDIPTLQKMKEAADKTVAESDQMPSEDSSVGASGKHKKPPTKWAENILAGIESGKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--------------------EINNIIAH 590
            RF+F+LGIRHVG   A++LA+ + + ++  +                          A 
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLEHVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658

Query: 591 NNDDWLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614
                  L+                           +P   + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKSIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQTDKALPTDWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV I++E + L 
Sbjct: 779 TLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSILSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|89898194|ref|YP_515304.1| NAD-dependent DNA ligase LigA [Chlamydophila felis Fe/C-56]
 gi|123735917|sp|Q254X9|DNLJ_CHLFF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|89331566|dbj|BAE81159.1| DNA ligase [Chlamydophila felis Fe/C-56]
          Length = 662

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 228/701 (32%), Positives = 367/701 (52%), Gaps = 48/701 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R++  +L ++I   D  YY    PII D +YD   ++  +I    P+         P  +
Sbjct: 7   REQYLALCKDIEEDDYRYYVLHDPIISDYDYDMKMQKLLSIEAQHPEWRVLW---SPSMR 63

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  ++ S   VTHS P LS+   + +E+L  F +R+ +        +  +TLE KIDG 
Sbjct: 64  LGDRISGSFPVVTHSHPMLSIANAYTLEELNDFFSRVEKTLG----YTPTYTLELKIDGI 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + IRYE+   V A  RG+G  GED++  IR I ++P  L    PE +EVRGEV+ ++  
Sbjct: 120 AVAIRYEQRVLVQALSRGNGRQGEDITTNIRTIRSLPLRLPKEAPEFLEVRGEVFFTRAT 179

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N       +  +ANPRNAA G L+ L+  +     N  +   G  +E   +  Y+ 
Sbjct: 180 FEQINSIQRQSEKPEFANPRNAAGGTLKLLSAKEA-AQRNLELSIYGAWAEENTESHYDN 238

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L   +  GFPV    RQ  +   +V   +E+  IR  LP +IDG+V KVD    QK LG 
Sbjct: 239 LMLCQKWGFPVFGRPRQYKSVEEVVKALHEIAKIRDQLPMEIDGVVIKVDNTEDQKVLGM 298

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+  RW +++K+A +Q  T L DI IQ+GRTG+LTPVA+L PV + G+ ++ A+L+NE+
Sbjct: 299 TAKHYRWALAYKYAPEQGETILEDILIQVGRTGVLTPVAKLRPVFLSGSKVSRASLYNEE 358

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +DIR+GD V V++ GE+IPKVV + + +R    +P+  P +CP+C
Sbjct: 359 EIER-----------KDIRIGDTVYVEKGGEIIPKVVGVCLEKRPEGTKPWVMPEYCPVC 407

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
             RV R+ +  + +           +CSA  +E+++ FV R+A +IE LG++ +   F  
Sbjct: 408 HERVSRESDKVSVR-------CTNSSCSAGTIEKIRFFVGREALDIEHLGEKVITKLFD- 459

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I    DIF +             + GF D S+ N+  SI K ++  LERFI +L
Sbjct: 460 ---LGLIHRRCDIFQITEEDL------LQVPGFKDKSIKNVLKSIEKAKSAPLERFIAAL 510

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI +VG   A +LA+++LS                     L  +  +G  +A++IV+++ 
Sbjct: 511 GIPYVGIGGANALAQHFLSLDAVMSA----------SLEELKVIDGIGSKVAESIVDYFH 560

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
              N+  ++ +L      +     + S   + K  V TG+L+K+ R +A+  +   G  V
Sbjct: 561 QSDNVEEIQKMLSLGVNVLPYSRASAS--CQGKTFVITGSLEKMTRSEAEASIRNCGGKV 618

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + +S+  + ++VG +PGSKL+KAQ+L + I+NE   L +L
Sbjct: 619 GSSVSKSINYLVVGKDPGSKLKKAQELQIPILNESDLLKIL 659


>gi|253583310|ref|ZP_04860508.1| DNA ligase [Fusobacterium varium ATCC 27725]
 gi|251833882|gb|EES62445.1| DNA ligase [Fusobacterium varium ATCC 27725]
          Length = 688

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 221/731 (30%), Positives = 359/731 (49%), Gaps = 50/731 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           MK+ +L   E   ++  ++ +  L  ++  ++  YY  ++ +I D EYD L      +  
Sbjct: 1   MKEMKLNFFEENDMKTDKERIEKLRADLLKYNQYYYTNNESLISDVEYDMLMNELKDLEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
            +P+         P   +G          KVTH  P LSL   +N E++  FI RI +  
Sbjct: 61  KYPEYK---SEASPTVIVGASNLRENKFQKVTHRKPMLSLSNTYNEEEIGDFIDRIKKLL 117

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
            ++++  I + LE K+DG  I+I+YEKGK V    RGDG  GEDV+  I  I TIP  L 
Sbjct: 118 PEENN--IKYALELKLDGLSISIQYEKGKLVKGVTRGDGAIGEDVTENILEIETIPHTLK 175

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LN 237
             +   IE+RGE+ +  + F  LN+  +  G + +ANPRNAASG LR+++ + I    L+
Sbjct: 176 EPL--DIEIRGEIVLPISKFETLNERRMEAGEEVFANPRNAASGTLRQIDASIIKERGLD 233

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            + + +        +   E ++ +  LG           T   +    +  +  +  L Y
Sbjct: 234 CYFYFIVDAKNYGIQTHSESIKYLESLGIKTTGVCEVLGTASALKKRIDYWEQEKEKLDY 293

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           + DG+V KVD      +LG   +SPRW I++KF  KQ +T LL I  Q+GRTG +TPVA 
Sbjct: 294 ETDGMVIKVDNLDFWDKLGNTTKSPRWAIAYKFPAKQVTTTLLGITWQVGRTGKVTPVAE 353

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LE V++ G+ +  A+LHN   I+            +DIR+GD+V +++A E+IP+VV  I
Sbjct: 354 LEEVSLSGSKVKRASLHNFHEIER-----------KDIRIGDKVFIEKAAEIIPQVVKSI 402

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
              R    +  + P  CP+C S V R+      K            C  +   R+++FVS
Sbjct: 403 KEFRDGSEKMITEPDKCPVCGSPVAREEGQVDIK-------CTNPVCPGKVKGRIEYFVS 455

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           RDA NI G G + ++   +       I+   DI+ L+  ++     +ENI   G  SV N
Sbjct: 456 RDAMNIGGFGSKMVEKMLE----LGFIKNVGDIYDLKDHKE----DLENIEKMGKRSVEN 507

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L DSI   +     + I++LGI  +G    + LA+   +  N  +           +   
Sbjct: 508 LLDSIEASKKRDYSKVIYALGIPFIGKYSGKILAEASRNIDNLMK----------MEIEE 557

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVF 654
           L+ +  +GD  A+A+ +F+++  NI  +  L              E         K  +F
Sbjct: 558 LMEIDGIGDKGAKAVYDFFRDEENIELINILRGHGLQFAMEEKEEEDQSDKIFSGKTFLF 617

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQ 713
           TGTL+  +R + +E + +LG    + +S+  D +I+G+  GSKL+KAQ+LG VKI+ EE+
Sbjct: 618 TGTLKNFKREEIKEEIEKLGGKNLSAVSKNLDYLIIGEKAGSKLKKAQELGTVKILTEEE 677

Query: 714 FLFLLQQYNTT 724
           F+ + +  +  
Sbjct: 678 FIEICKNNDKN 688


>gi|325129804|gb|EGC52612.1| DNA ligase, NAD-dependent [Neisseria meningitidis OX99.30304]
          Length = 841

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 248/842 (29%), Positives = 381/842 (45%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186
           + +EPK DG  I++ Y  G  + AA RGDG +GEDV+  I+ +  IP  L     PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLIQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTF-HGIVSYYNEMKSIRSTLPYDIDGLV 303
                 A+   + L   + LGF + NG          ++++Y  M+  R  LPY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYGHMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 QETAVAVSDGIGHRQDDLFAEAPAANQTQSVPLYKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550
            L         +  +                               N+   I   +   L
Sbjct: 539 RLDIPTLQKMKETADKTVAESDQMPSEGSSVGASGKHKKQPTKWAENILAGIESGKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--------------------EINNIIAH 590
            RF+F+LGIRHVG   A++LA+ + + +   +                          A 
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAE 658

Query: 591 NNDDWLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614
                  L+                           +P   + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|15835041|ref|NP_296800.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Nigg]
 gi|270285206|ref|ZP_06194600.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Nigg]
 gi|270289225|ref|ZP_06195527.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Weiss]
 gi|301336602|ref|ZP_07224804.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum MopnTet14]
 gi|13626415|sp|Q9PKP2|DNLJ_CHLMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|7190466|gb|AAF39279.1| DNA ligase [Chlamydia muridarum Nigg]
          Length = 660

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 224/704 (31%), Positives = 363/704 (51%), Gaps = 49/704 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +    +L  E+  HD  YY   +P I D  YD   R    I    P+      P  P   
Sbjct: 6   QDYYIALCTELIEHDRRYYVLDRPTISDYSYDMKMRELQKIEAQHPEWKV---PWSPTIY 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   +     V HS P +S+  ++++E+L +F +R  +           ++LE KIDG 
Sbjct: 63  LGDRPSGQFPVVPHSHPMVSIANVYSLEELEEFFSRTEKLLG----YFPTYSLELKIDGI 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + IRYE   F  A  RG+G  GED++A +  I ++P  L  + PE +EVRGEV++S   
Sbjct: 119 AVAIRYENRTFAQALSRGNGVKGEDITANVSTIRSLPMTLPQDAPEEVEVRGEVFLSYQA 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  LN      G+  +ANPRNAA G L+ L+  +     N  +   G  +       +E 
Sbjct: 179 FEKLNICQREQGKLEFANPRNAAGGTLKLLSSREA-AKRNLDLSIYGLITNREEHSHFEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L      GFP+    +Q  T   ++    E++ +RS LP  IDG+V KVD  + Q +LG 
Sbjct: 238 LGLCAHWGFPIAGMPKQCRTKEEVIERIREVEGMRSRLPMAIDGVVVKVDSVAEQHRLGL 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            ++  RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+NED
Sbjct: 298 TSKHYRWAIAYKYAPERAETILQDITVQVGKTGILTPVAELTPVLLSGSRVSRASLYNED 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +DIR+GD V V++ GE+IPK+V I + +R PD++P+  PS CP+C
Sbjct: 358 EIEK-----------KDIRIGDSVYVEKGGEIIPKIVGINLAKRSPDSKPWKMPSLCPMC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            + V+++          + RCT  L       +    F S+ A NI+ LG++ +   F+ 
Sbjct: 407 HNPVIKER--------VSVRCTNPLCLGGMLEKIC-FFASKGALNIDHLGEKVIAKLFE- 456

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 IR  +D+F L             + GF D SV NL  SI   + ++L+RF+ +L
Sbjct: 457 ---MGLIRSCSDVFALTENDLK------QVPGFKDRSVHNLLASIAGAKEVTLDRFLTAL 507

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  VG+  A +LA ++ +     +               L+ +  +G  +A +I++F+ 
Sbjct: 508 SIPFVGSSGAIALADHFGTLDKVMKA----------SLDELLSIEGIGQKVAASIIDFFS 557

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
              N+  +   ++E+   I   + +  + ++ K  V TGTLQ++ R +A+E +  LG  +
Sbjct: 558 KTENVEEICR-MQELGVRILPKQVDRWAPLQGKIFVLTGTLQEMTRLQAEERIRSLGGKI 616

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           S+ +S+ T  ++VG   GSKL+KAQ+LGV+++ E   L +L Q 
Sbjct: 617 SSSVSKNTYAVVVGREAGSKLKKAQELGVQVLEESDLLKILNQN 660


>gi|325143946|gb|EGC66256.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240013]
 gi|325206489|gb|ADZ01942.1| DNA ligase, NAD-dependent [Neisseria meningitidis M04-240196]
          Length = 841

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 248/842 (29%), Positives = 376/842 (44%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+      P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPEFKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  I+ +  IP  L     PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303
                 A+   + L   + LGF + NG          V  + E    +    PY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 QETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550
            L         +  +                               N+   I   +   L
Sbjct: 539 RLDIPTLQKMKETTDKTVAESDQTPSEGSSVGASGKHKKQPVKWAENILGGIESGKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--------------------EINNIIAH 590
            RF+F+LGIRHVG   A++LA+ + + +   +                          A 
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAE 658

Query: 591 NNDDWLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614
                  L+                           +P   + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV I++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSILSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|190570889|ref|YP_001975247.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019404|ref|ZP_03335210.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|254782310|sp|B3CPS1|DNLJ_WOLPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190357161|emb|CAQ54574.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212994826|gb|EEB55468.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 651

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 274/696 (39%), Positives = 396/696 (56%), Gaps = 54/696 (7%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
             L+ +I+YH+  YYQ SKP I D+EYD LK++  AI             +     +G  
Sbjct: 9   EKLQNQINYHNILYYQKSKPEISDAEYDELKKKLAAIEPE-----AYATQDS----VGAP 59

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
            +    KV H  P LSLE  ++ + + KF+++I RF      + I    EPKIDG   + 
Sbjct: 60  PDERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLIA---DEIEILCEPKIDGLSFSA 116

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
            YE GKFV AA RGDG  GEDV+  +  I   P+ L       +EVRGE+YIS +DFL L
Sbjct: 117 IYEDGKFVKAATRGDGFVGEDVTHNVATIKGFPKFLQDV-QGRLEVRGEIYISNSDFLKL 175

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
           N+         +ANPRNAA+G L++LN     +      +          K Q E+L+K+
Sbjct: 176 NEN------NEFANPRNAAAGSLKQLNANITAKRP--LRYFAYSLIGGIEKSQSEVLEKL 227

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             LGF VN      ++ +G++ +YNE+   R  L YDIDG+VYKV++  LQ +LG   ++
Sbjct: 228 EKLGFCVNEHRSLTSSLNGMLKFYNEIYDCRYNLDYDIDGIVYKVNDLVLQSRLGSTHKA 287

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PR  +++KF+   A T+L  I IQ+GRTG+LTPVA L PVNIGG L++ A+LHN+D IK 
Sbjct: 288 PRSALAYKFSAIYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQDEIKR 347

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR GD V +KRAG+VIP++V +    RH +   F FP  CP C S+V
Sbjct: 348 -----------KDIREGDVVTIKRAGDVIPQIVKVDEGSRHTNMPEFVFPDICPECGSKV 396

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
             +          A RC     C AQ +E+LKHFVS+DAF+I GLG++Q+ FF+  E   
Sbjct: 397 QIE--------GVAVRCPEEFNCKAQIVEKLKHFVSKDAFDIVGLGEKQIKFFYDLE--- 445

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             IR   DIF L+ R +  + K  +  G+G+ S+ NL  +I  RR ISL+RFIFSLGIR 
Sbjct: 446 -LIRQIPDIFILEERLKEFSLKEHH--GWGEKSIANLLSAIQSRRVISLDRFIFSLGIRF 502

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           +G  +A  LA YY+SY N+   +++           L+ +  +G+ +A+++  F+   RN
Sbjct: 503 IGQVVAELLANYYVSYDNWYNSMSSNDV-------ELVGIDGIGEKVAESLKSFFSQERN 555

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I  +  L   +   +     +  S + NK +VFTG L+ + R +A+     LGA +S+ L
Sbjct: 556 IKMLNDLTAYLQI-LPVSSNSSDSFLNNKIIVFTGKLRAMSRGEAKVRAKVLGAKISSSL 614

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           S KTD +I G++PGSK +KA +LGV+I++EEQ+  L
Sbjct: 615 STKTDYLIAGEDPGSKYKKAMELGVEILDEEQWNRL 650


>gi|261392961|emb|CAX50546.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Neisseria
           meningitidis 8013]
          Length = 841

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 247/842 (29%), Positives = 376/842 (44%), Gaps = 167/842 (19%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+      P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDRLFRELEALELNHPEFKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D     
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGKPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186
           + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  I+ +  IP  L     PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLV 303
                 A+   + L   + LGF + NG          V  + E    +    PY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R  
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPM 428

Query: 424 DA--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 429 RETAVAVSDGIGHRQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 484

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 485 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLY 538

Query: 512 TLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYDSINKRRNISL 550
            L         +  +                               N+   I   +   L
Sbjct: 539 RLDIPTLQKMKEAADKTVAESDQMPSEDSSVGASGKHKKPPTKWAENILAGIESGKTPEL 598

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--------------------EINNIIAH 590
            RF+F+LGIRHVG   A++LA+ + + ++  +                          A 
Sbjct: 599 ARFLFALGIRHVGERTAKTLAQAFGTLEHVRRAPEPVLACLPDIGTVVARSIAHFFAQAE 658

Query: 591 NNDDWLSLIR--------------------------VPL--VGDIIAQAIVE-------- 614
                  L+                           +P   + +  AQA+ E        
Sbjct: 659 QQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEG 718

Query: 615 -------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTG 656
                        +   P+N   +E L    +      E    S      +  K  V TG
Sbjct: 719 LQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINEAVAGKTFVLTG 778

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           TL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L 
Sbjct: 779 TLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLT 838

Query: 717 LL 718
           LL
Sbjct: 839 LL 840


>gi|42561289|ref|NP_975740.1| DNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|81400468|sp|Q6MSK8|DNLJ_MYCMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|42492787|emb|CAE77382.1| DNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301320499|gb|ADK69142.1| DNA ligase (NAD(+)) [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 668

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 228/712 (32%), Positives = 383/712 (53%), Gaps = 46/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S ++A   ++ L+++++     YY    P + D+EYD   +   ++   +P+L  S   
Sbjct: 1   MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLETLYPELITS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG ++    K+TH  P LSL  +++ ++   F T+I +     D+    +  E
Sbjct: 58  DSPSQKVGGMVSEKFLKITHKTPMLSLGNVFSFDEFLDFNTQISKISNTLDNQ---YVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE G  V AA RG+G  GEDV+   R I +IP  L ++  E +EVRGE+
Sbjct: 115 LKIDGLSISLVYENGSLVSAATRGNGVVGEDVTINARTIKSIP--LKISKKERVEVRGEI 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           Y+SK +F  +N + +      + NPRNAA+G LR+L+   +             + +   
Sbjct: 173 YLSKAEFEKINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYYISDDSNN 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             QY+ + K+  LGF  N           I +Y ++  ++++ L Y IDG+V+K+++ +L
Sbjct: 233 LTQYQSILKLNELGFKTNKETMLCKNLDEIKAYIDKYTNLKNDLDYQIDGIVFKINDKNL 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q  LG  ++ P+W I++KF  +   T+LLDI   +GRTG +T  A+LEPV + GA I+ A
Sbjct: 293 QNSLGFTSKIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGAKISAA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TL+N +YIK            +D+R+   V +K+AG+VIP+V++ I +E     + F   
Sbjct: 353 TLNNAEYIK-----------TKDLRINSIVKIKKAGDVIPEVIEAIKDEDFYKLEKFKPA 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            +CP C S + ++ N          +     +CS + L  L+HF SR+A NI  LG + L
Sbjct: 402 LYCPNCHSLLEKNENE-------VDQFCINSSCSMKILRSLQHFSSREAMNIVSLGDRSL 454

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F  +     I+  +DI+ L+  +     +I  I  FG  S  NL DSIN  +N SLE
Sbjct: 455 EILFNLK----IIQNISDIYKLEEYKD----QILAIDNFGLKSYLNLIDSINMSKNNSLE 506

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +F LGIRH+G++ A+ LA+ Y +  N               +  LI++  +G+ +A +
Sbjct: 507 KVLFGLGIRHIGSKTAKILARKYQNIDNLMSA----------SYDELIQINSIGESLALS 556

Query: 612 IVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           I+++++   N+  ++ L    ++ +    + N  S I NK  V TGTL +  R + +  +
Sbjct: 557 IIDWFKIEDNLKLIDELKSFNINFNYLGAKINSDSIIANKSFVITGTLTR-PREEFKTLI 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
                 V   +S++TD ++ G+N GSKLEKA++LGVKI++E+QF  LL+   
Sbjct: 616 ENNAGKVIGSISKQTDYLLAGNNVGSKLEKAKKLGVKIIDEQQFFDLLKSEK 667


>gi|297626017|ref|YP_003687780.1| DNA ligase (NAD+) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921782|emb|CBL56340.1| DNA ligase (NAD+) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 764

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 207/723 (28%), Positives = 351/723 (48%), Gaps = 54/723 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++  + L +EI    + YY   KP I D+ YD L      +   +P L     P+ P  +
Sbjct: 29  QRRHAELVKEIDDAQEAYYGRDKPFITDALYDELMLELQKLEAEYPSL---RTPDSPTQR 85

Query: 78  IGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +G          +TH    LSL+ +++I++L++++TR          ++  +  E KIDG
Sbjct: 86  VGAPQEETDFSPLTHPSQMLSLDDVFSIDELKEWMTRTEAALG----HTPEWLCEVKIDG 141

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV----LSLNIPEIIEVRGEVY 192
             I ++Y  G+   AA RGDG  GE+++   R I  IP+      + +   + E RGEV+
Sbjct: 142 LAIDLQYVNGRLQTAATRGDGRVGENITPNARTIKAIPQRLRPDPAQDFLALFEARGEVF 201

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           +   +F A ND++   G+  +ANPRNAA+G LR+ +P     R L+   HGLG    +  
Sbjct: 202 VPLKEFAAYNDKLADQGKPQFANPRNAAAGSLRQKDPRVTAQRPLSSICHGLGVADGLAV 261

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q +    M+  G P++   +  ++   ++ +       R  L + IDG+V KVD F+ 
Sbjct: 262 TRQSDAYAVMKAWGLPISPYNKVVHSLDEVLDFITYYGQHRHDLIHQIDGIVVKVDSFAE 321

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+QLG  +R+PRW I+ K+  ++ +TRLLDI +++GRTG +TP   +EPV + G+++++A
Sbjct: 322 QQQLGVTSRAPRWAIAFKYPPEEVNTRLLDIRVKVGRTGRVTPYGVMEPVQVAGSVVSSA 381

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   ++            + + +GD V++++AG+VIP++V  +V  R    +PF  P
Sbjct: 382 TLHNAYEVER-----------KGVLIGDMVVLRKAGDVIPEIVGPVVEMRTGAERPFVMP 430

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C +++  +      +     RC    +C AQ  ERL    +R AF+IE LG Q  
Sbjct: 431 THCPSCGTKLASE-----KESDKDIRCPNSKSCPAQLRERLFSLAARSAFDIEALGYQGA 485

Query: 492 DFFFK----SEDPAFSIRIPADIFTLQRRQQTSTTKIENIL-----------GFGDVSVT 536
           D   +      +       P  + T+    + +T +                     +  
Sbjct: 486 DAILRAGVLDNEAQLFNLTPEQLVTVPFYTRGATPRELKEPALVPPPGIRDGRVLSANGR 545

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
            L +++   R+  L R + +L IRHVG   AR+LA  + S                    
Sbjct: 546 RLLENLRTARHQPLWRVLVALSIRHVGPTAARALAARFGSMDAIRAA----------GVE 595

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            L     VG IIA+A+ +++    ++  + A   +            +  +    +V TG
Sbjct: 596 ELADTDGVGLIIAEAVRDWFTVDWHLEILNAWAADGVSMADEKSARPAQTLRGLTVVVTG 655

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +LQ   R  A+  +T  G   +  +SR TD ++VG+N GSK  +A+QLGV +++E QF  
Sbjct: 656 SLQDFTRDSAKAAITDRGGKAAGSVSRHTDYVVVGENAGSKQARAEQLGVPMLDEAQFRE 715

Query: 717 LLQ 719
           LL+
Sbjct: 716 LLE 718


>gi|261377933|ref|ZP_05982506.1| DNA ligase, NAD-dependent [Neisseria cinerea ATCC 14685]
 gi|269145793|gb|EEZ72211.1| DNA ligase, NAD-dependent [Neisseria cinerea ATCC 14685]
          Length = 831

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 246/853 (28%), Positives = 382/853 (44%), Gaps = 179/853 (20%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQHIRRLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  +
Sbjct: 62  VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187
            +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L     PE+IEV
Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246
           RGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 179 RGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVARQ 238

Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304
                A+   + L   + LGF + NG          V  + E    +    PY+IDG+V 
Sbjct: 239 QGGFEAEEHIQELAYFQELGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVV 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLAQQRELGFISRAPRWAIAHKFPAEEALTVVEAIDVQIGRTGAVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 A---------------------------------QPFSFPSFCPICQSRVVRDLNPKTGK 451
                                             +P+  P+ CPIC+S + R+       
Sbjct: 408 ETAVMGLSDGIKYQQDDLFAEAPAANQTQSVPLHKPYRLPTHCPICRSEIEREEGE---- 463

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++
Sbjct: 464 --AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQLVGQD----LVRHFADLY 517

Query: 512 TLQRRQQTSTTKIENI-------------------------LGFGDVSVTNLYDSINKRR 546
            L         +  +                                   N+   I   +
Sbjct: 518 RLDIPTLQKMKETADKGSSENEDGDAETVSGDLSERNTQNGKKQPTKWAENILAGIEASK 577

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA----------------- 589
              L RF+F+LGIRHVG   A++LA+ + S ++  +    I+A                 
Sbjct: 578 TPELSRFLFALGIRHVGERTAKTLAQAFGSLEHVRRAPEPILACLPDIGTVVAHSIAYFF 637

Query: 590 ---HNNDDWLSLIR--------------------------VPL--VGDIIAQAIVE---- 614
                      L+                           +P   + +  AQA+ E    
Sbjct: 638 AQDAQQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGK 697

Query: 615 -----------------FYQNPRNICAVEALLKEVSPSIGRHEKNV------------SS 645
                            +   P+N   +E L    + +   +++              + 
Sbjct: 698 SIEGLQTDKALPADWQAWRSEPQNAALLENLKTFFAQTSSENQEATVSECAASPWDGLNE 757

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +  K  V TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LG
Sbjct: 758 AVAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALG 817

Query: 706 VKIMNEEQFLFLL 718
           V +++E + L LL
Sbjct: 818 VSVLSEAELLTLL 830


>gi|315649754|ref|ZP_07902837.1| NAD-dependent DNA ligase LigA [Paenibacillus vortex V453]
 gi|315274728|gb|EFU38109.1| NAD-dependent DNA ligase LigA [Paenibacillus vortex V453]
          Length = 670

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 210/715 (29%), Positives = 341/715 (47%), Gaps = 60/715 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++++  L  E++ ++  YY   +P++ D EYDAL  +  A+            P+ P  +
Sbjct: 4   KEKMGKLITELNNYNYHYYTLDQPLVSDKEYDALYDQLVALEAE----TGVTLPDSPTQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ----KKDDNSIF---FTL 130
           +GGE+        H  P  SL+K  NIE LR +  R+ R       K   N +    + L
Sbjct: 60  VGGEILKGFAPHRHLAPLWSLDKAQNIEQLRTWHDRVVRLVNDYNTKNPGNPLPNPCYAL 119

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K DG  + + Y+ GK V A+ RG+G  GE +   ++ I ++P  +  +    IEV+GE
Sbjct: 120 ELKFDGLTLNLTYQDGKLVQASTRGNGAVGEGILPQVKTIKSVPLTIPYD-EGTIEVQGE 178

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
             ++ +     N        +P  N RNAA+G LR L+P     R LN + + +G +  I
Sbjct: 179 GIMNLSVLEKYNQTA----AEPLKNARNAAAGALRNLSPKVTAERKLNAYFYNVGYSDGI 234

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                 EM+  +R     VN  +     F  ++    +++  RS L Y IDG V KV +F
Sbjct: 235 TFADHKEMMDFLRENRLKVNPYIFYFEQFDDVMEQLADIEKRRSELDYLIDGAVVKVTDF 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            +++ LG   + PRW +++KF  ++ +T L  +   +GRTG +TP+AR+EPV + G  + 
Sbjct: 295 RIREALGYTDKFPRWAVAYKFEAEETTTVLQSVTWNVGRTGKITPLARVEPVELAGVTVQ 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           N TL+N          G + R      +G RV ++R+ +VIP+++  +  E   +   F 
Sbjct: 355 NCTLNNI---------GDIERKNLKFALGSRVFIRRSNDVIPEILGKVTEENDGEEILF- 404

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C   + +          A   C     C  Q + R+ HF SRDA +IE    +
Sbjct: 405 -PVECPSCGFPLEQR--------GAHLFCNNKTGCKPQIVARITHFASRDAMDIETFSDK 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                ++       +R PAD++TL      S   +  +  FG+    NL D+I K +   
Sbjct: 456 TAIQLYEE----LGVREPADLYTL------SFDSLVKLERFGEKKAQNLLDAIEKSKERD 505

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L  F+F+LGI + G    + LA +Y                       L+ +P VG I+A
Sbjct: 506 LASFLFALGIPNTGKSTTKMLADHYRDLHRVMAAT----------AEELVELPDVGGIVA 555

Query: 610 QAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
            +I  ++ +P    ++E +L               +  S    K +V TGTL  + R +A
Sbjct: 556 DSIAGYFADPFAQASIEKMLSLGVQAQAPEAPKPVSSDSYFSGKTVVLTGTLHLLTREEA 615

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQ 720
            E +  LGA V+  +S+KTD++I G+  GSKL KAQQLG+ I+ +EE+F+ LL +
Sbjct: 616 TERLEALGAKVTGSVSKKTDLLIAGEKAGSKLAKAQQLGIDILEDEEEFVRLLNE 670


>gi|182419331|ref|ZP_02950583.1| DNA ligase, NAD-dependent [Clostridium butyricum 5521]
 gi|237666454|ref|ZP_04526439.1| DNA ligase, NAD-dependent [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376662|gb|EDT74234.1| DNA ligase, NAD-dependent [Clostridium butyricum 5521]
 gi|237657653|gb|EEP55208.1| DNA ligase, NAD-dependent [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 663

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 201/710 (28%), Positives = 349/710 (49%), Gaps = 57/710 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++++  L ++++ +   YY    P + D EYD +      +            P  P 
Sbjct: 2   DKKEKIKELVEQLNNYSYKYYVLDDPSVTDKEYDKIYDELKKLEEE----TGFVLPYSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF-----WQKKDDNSIFFTL 130
            ++G  +     K TH     SL+K  +IE++  +  R  +F      + ++   + + L
Sbjct: 58  LRVGDIVLDGFEKYTHKAKLWSLDKAQSIEEIIDWHNRNVKFVNDMRLKGENLPDLKYVL 117

Query: 131 EPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
             K DG  I + Y E+G    AA RG G+ GE+V+A ++ I +IP  +  N   I+EV G
Sbjct: 118 TKKFDGLTINLTYNEEGVMEIAATRGTGNIGENVTAQVKTIKSIPLKIENNH--ILEVHG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSE 248
           E  +++  F   N+      + P  N RN A+G LR LN  +   R L+ F + +G    
Sbjct: 176 EAVMTQEAFDKYNESA----QVPLKNLRNGAAGALRNLNVKETARRNLSAFFYDIGYKEG 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K   EML  ++  G P+++ ++   T   I    + + SIR  L YDIDGLV  +D+
Sbjct: 232 SPFKTYLEMLNFIKEKGLPMDDYMKVCTTIDEIQEQIDYINSIRFDLNYDIDGLVVAIDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
              ++ +G   + P+W I++KF  ++A+T+LL ++  +GR+G L P A LEPV + G  +
Sbjct: 292 MRTRELMGYTVKFPKWAIAYKFEAQEATTKLLGVEWNVGRSGRLAPTAILEPVELAGVTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATL+N D I             + +++G  V V+R+ +VIP+++ I+       A+  
Sbjct: 352 KRATLNNMDDIAR-----------KGVKIGADVFVRRSNDVIPEIMGIVPET-LDGAEDI 399

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C S ++ D         A + C   L+C  Q ++ + H+  R+A NI G  +
Sbjct: 400 KPPTECPACGSHIILD--------GAHYFCENTLSCKPQMVKSIVHYACREAMNIAGFSE 451

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +  +  F+      +I+  +D++ L+  +         +  FG     NL ++I   +  
Sbjct: 452 RTAEQLFEK----LNIKSISDLYKLKEEELID------LEKFGPKKAQNLLEAIENSKEC 501

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L  FI++LGI +VG + A+ L   + S +                +  L+ VP VGDI+
Sbjct: 502 ELHAFIYALGIPNVGVKTAKDLVSRFKSIEGLKNAT----------FEELVSVPDVGDIV 551

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           AQ ++ F++  + +  ++ LL           +   +    K +V TG+LQ   R + +E
Sbjct: 552 AQDVMSFFKEEKVLETIDELLALGVNPKFEEFEVTENPFMGKTVVATGSLQNYSRSEIKE 611

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +  LGA V+  +S+KTD +I G+  GSKL KAQ+LGVK+++EE+F  +L
Sbjct: 612 KLESLGAKVAGSVSKKTDYVIAGEAAGSKLTKAQELGVKVLSEEEFEEIL 661


>gi|222481049|ref|YP_002567286.1| DNA ligase, NAD-dependent [Halorubrum lacusprofundi ATCC 49239]
 gi|254781342|sp|B9LU22|DNLJ_HALLT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222453951|gb|ACM58216.1| DNA ligase, NAD-dependent [Halorubrum lacusprofundi ATCC 49239]
          Length = 710

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 225/735 (30%), Positives = 360/735 (48%), Gaps = 59/735 (8%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             P+ ALS ++A ++ S L   I  HD  YY  + P+I D  YD L  R   + + F   
Sbjct: 24  FEPVGALSEDEATEQASLLRAAIREHDHRYYLEADPLIPDETYDRLFTRLQELENEFD-- 81

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK--DD 123
                 N P  ++GGE    L  V H  P  S++     + +R+F  R+ +    +  D 
Sbjct: 82  --LPTQNSPTRRVGGEPLDELATVEHVAPMRSIDNATEADAVREFDGRVRKGLDAEGFDS 139

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
           +++ +  EPK DG  + + YE G++V AA RGDG +G+DV+  +R I ++P  L  + P 
Sbjct: 140 DAVEYVCEPKFDGLSVEVIYEDGEYVRAATRGDGTAGDDVTEQVRTIRSVPGKLRGDPPS 199

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVH 241
            + VRGE Y+ ++ F A N+ ++  G +P+ANPRNAA+G LR+L+P+ +       FF  
Sbjct: 200 RLAVRGEAYMPRDAFKAYNEALMERGEEPFANPRNAAAGTLRQLDPSVVAERPLDIFFFD 259

Query: 242 GLGKTS------EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
            LG  +             +E        G    N V + +   G + Y + + + R  L
Sbjct: 260 VLGWENDAEGDSPNRPATHWEEFDTFDAFGLRRANRVERVDDIEGALDYRDRLMADREDL 319

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            + IDG+V  VD+ + ++ LG  AR+PRW  ++KF  + A+T +  I +Q+GRTG LTPV
Sbjct: 320 NFAIDGVVIAVDDRANREALGATARAPRWAFAYKFPPRTATTIVEGITVQVGRTGRLTPV 379

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A L+P+++GG  ++ ATLHN   I+ L            + VGD V + RAG+VIP V +
Sbjct: 380 AELDPIDVGGVTVSRATLHNPAEIEAL-----------GVNVGDCVRIYRAGDVIPYVPE 428

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           ++          + FP  CPIC + V         +      CTGGL C AQ    ++H+
Sbjct: 429 VVEKR---SEGTYVFPETCPICDAPV--------ERDGPLAFCTGGLVCPAQLERAVEHW 477

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
             RDA +IEGLG +++    +    A  +    D++ L          +  + G+G+ S 
Sbjct: 478 ARRDALDIEGLGPERVQQLRE----AGLVESLPDLYDLAVDD------LAALEGWGETSA 527

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            NL   +   R+  L+ F+  LGI  VGA  AR+LA ++                   D 
Sbjct: 528 ENLIAELAATRDPPLDDFLAGLGIPDVGATTARALAAHFGDLDAILDA----------DE 577

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
            +L  V  VG  +A++I  F  N  N  A++ L +          +     ++    VFT
Sbjct: 578 DALRAVDDVGPEVAESIRTFLDNAENRVAIDGLRERGVDPESVDVETGD-ALDGLTFVFT 636

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714
           G+L    R +AQ +V   GA  ++ +S  TD ++ G++PG SK + A   GV +++EE+F
Sbjct: 637 GSLST-TRGEAQAHVEAHGADATSSVSGNTDYLVAGESPGRSKRDDADAEGVPVVDEEEF 695

Query: 715 LFLLQQYNTTLRIHD 729
             LL +        +
Sbjct: 696 AGLLAERGVAWPPEE 710


>gi|291542878|emb|CBL15988.1| DNA ligase, NAD-dependent [Ruminococcus bromii L2-63]
          Length = 661

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 221/719 (30%), Positives = 347/719 (48%), Gaps = 73/719 (10%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +    A+     L +++ YH++ YY   +P I D +YD L R  + I   FP L     P
Sbjct: 1   MDFITAQNRAQELTKQLEYHNNLYYNQDEPEISDYDYDMLMRELENIEKEFPSLK---SP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P N++GG        VTH +   SL   ++ E+LR+F  R+          ++ + +E
Sbjct: 58  MSPTNRVGGNAGEKFSPVTHEVVMESLHDSFSHEELREFDARVRETV-----PNVRYVVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK DG  ++  YE G FV  + RGDG  GEDV+  +  I ++P+ +    PE +EVRGEV
Sbjct: 113 PKFDGLSVSCEYENGVFVRGSTRGDGSVGEDVTENLMTIKSLPKRIPNA-PEYLEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y+S N F AL         K + NPRNAA+G LR+ N      R L+ FV  + +   + 
Sbjct: 172 YMSFNSFDALTRRQEENEEKTFKNPRNAAAGSLRQKNAKITAQRSLDIFVFNIQQIRGMT 231

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +   + L  +  LGFP        +    ++     + ++R  L Y IDG V KVD F+
Sbjct: 232 IESHIQGLDYLTELGFPTAFYS-VYDNVDEVIEEIERIGNMRGELDYAIDGAVVKVDSFA 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            ++ LG  A+ P+W  ++K+  ++  T+LL+I+I +GRTG+LTPV   EPV + G  ++ 
Sbjct: 291 SRRLLGSTAKYPKWAEAYKYPPEEKPTKLLNIEINVGRTGVLTPVGNFEPVLLAGTTVSR 350

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN+D+I             + I VGD V++++AGE+IP+V+ +  +    +A PF F
Sbjct: 351 ATLHNKDFID-----------EKGICVGDTVIIRKAGEIIPEVLSVKEHA--ENAVPFEF 397

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP C + V  D         AA RCT    C AQ    L HFVSRDA +I+GLG   
Sbjct: 398 PSVCPSCGNPVTHDEGE------AAIRCTNT-DCPAQLTRHLIHFVSRDAMDIDGLGPAI 450

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+           ++ PAD++ L+    +S      +    + S  NL  SI K +   L
Sbjct: 451 LEQLSDE----GLVKSPADLYRLKAEDISS------LERKAEKSAQNLISSIEKSKENEL 500

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R +F+LGIR++G + A+ + + + +  +                    ++   G ++A+
Sbjct: 501 FRLVFALGIRNIGLKAAKIICENFATIDDIMSA----------KAEDFEKIDGFGAVMAE 550

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++  ++        +  L            KN     E K  V TGTL  + R +A + +
Sbjct: 551 SLENYFSLDGTKELIADLKSLGLKMKPSQPKNTGGLFEGKTFVLTGTLPTMTRSEASKLI 610

Query: 671 TQLGA-----------VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            Q G                        ++ G++ GSKL KAQ LGV I++EE+   +L
Sbjct: 611 EQNGGKTSSSVSKKTS-----------YVLAGEDAGSKLTKAQTLGVTIISEEELKEML 658


>gi|125623311|ref|YP_001031794.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|166215816|sp|A2RIF3|DNLJ_LACLM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|124492119|emb|CAL97048.1| DNA ligase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070060|gb|ADJ59460.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 686

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 217/733 (29%), Positives = 347/733 (47%), Gaps = 81/733 (11%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              ++  L  +++     YY   +P + DSEYD L      +    P L R+   + P +
Sbjct: 3   IESKIKELTDQLNQFAYEYYTLDEPSVEDSEYDHLYHELVKLEQENPQLVRA---DSPTH 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           + GG +     K  H     SL  +++ E+L  +  R+ +     +  +  +  E KIDG
Sbjct: 60  RTGGVILDGFVKFRHPYNLYSLGDVFSREELALWEERVRK-----EIVNPEYICELKIDG 114

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +++ YE G  V AA RGDG +GE+++  ++ I  +P  L   I   I VRGE Y+ + 
Sbjct: 115 LSLSLYYENGLLVTAATRGDGTTGENITENVKRIKDVPLKLKEAI--DIVVRGEAYLPRQ 172

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
           +F  LN E    G  P+ANPRNAA+G LR+L+   +            + S      Q E
Sbjct: 173 NFAKLNAERELEGAAPFANPRNAAAGTLRQLDTKIV-AKRGLATFLYQEASPATNDTQEE 231

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+    LGF VN   + A     I  +  E   +R  LPYDIDG+V KV+  + Q++LG
Sbjct: 232 VLEYFEELGFQVNPERKFARNLDEIWEFIEEATRLRDELPYDIDGVVIKVNNLAEQEELG 291

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  +QA T +L +D  +GRTG++TP A +  V +    +  ATLHN 
Sbjct: 292 FTVKAPRWAIAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTAVLLAQTTVARATLHNV 351

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP------------- 423
           DYI+            +DIR  D+V++ +AG++IPKV  +++ +R P             
Sbjct: 352 DYIQ-----------EKDIRNHDKVMIYKAGDIIPKVGKVLLEKRKPARHLRKTHRANKY 400

Query: 424 -------------------DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLAC 464
                              +      P+ CP C S ++   +        A RC   L C
Sbjct: 401 VWTRFGRRSVEKGLVFSKREDNRVKIPTQCPECDSDLIHFEDE------VALRCVNPL-C 453

Query: 465 SAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI 524
            AQ  E+L HF SRDA NI GLG   +   F  +     +   AD++ L      +    
Sbjct: 454 PAQIREKLIHFASRDAMNIVGLGPSVISQLFDKK----LVTDVADLYQLTVEDLLT---- 505

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
             +    +     +  +I + R  S E+ +F LGIRHVG + A+ L + + + +  +Q  
Sbjct: 506 --LDKVKETLAQKIVSAIAQSRENSAEKLLFGLGIRHVGGKAAKLLLERFANLRALSQAS 563

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
                        +  +P +G +IA A+V +++       ++ L             NV 
Sbjct: 564 E----------EEISEIPSLGGVIATAVVSYFETAGAKTLLDELENAGLNFAYLGAVNVE 613

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +  K +V TG L  ++R +A+E +  LGA VS  +S+KTD+++ G+  GSKL KAQ L
Sbjct: 614 GILSGKTVVLTGKLTTLKRTEAKEKLEALGANVSGSVSKKTDLVVAGEEAGSKLTKAQDL 673

Query: 705 GVKIMNEEQFLFL 717
           G++I +E+  L L
Sbjct: 674 GIEIWSEQDLLDL 686


>gi|91762853|ref|ZP_01264818.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718655|gb|EAS85305.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 676

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 255/715 (35%), Positives = 398/715 (55%), Gaps = 43/715 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +    E          H+  YY  +KPI+ D E+D LK+    +   +  L      
Sbjct: 1   MNDKDLEIEYLKKIDLFQTHNKHYYDKNKPIVSDQEFDLLKKDIIDLESKYKFLK---SE 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P   IG + + +  K+ H +P LSL   +N EDL+ F  +I  F   KD N+I ++ E
Sbjct: 58  YSPTKSIGFKPSKNFQKIKHKVPMLSLGNAFNEEDLKNFEKKIINFLSLKDVNTIEYSAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190
           PKIDG   ++ Y  GK      RGDG+ GED++  ++ I  IP  +   N P+ I++RGE
Sbjct: 118 PKIDGISASLIYINGKLTKGLSRGDGNEGEDITQNLKTIKDIPLEITKSNFPKEIDIRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEI 249
           V+I  NDF  +        +  +ANPRNAASG LR+ N     +    F  +  G   ++
Sbjct: 178 VFIENNDFKKI--------KDKFANPRNAASGSLRQKNSLITEKIPLKFIAYTYGYEKKM 229

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             K Q   L+ ++  GF  N   ++      ++  + E++  R  L +DIDG+VYKV++F
Sbjct: 230 NIKNQTSFLENLKLWGFKTNPFNKKIIGVKNLMLNHKELEEKRKELAFDIDGIVYKVNDF 289

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQK+LG  A +PRW I+HKF+   + + +++I+IQIGRTG LTPVA+++PVNIGG +++
Sbjct: 290 DLQKRLGFAANAPRWAIAHKFSANSSISEIMNIEIQIGRTGALTPVAKIKPVNIGGVIVS 349

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNED I             +DIRVGD V V+RAG+VIP VV + + +R  +++ F 
Sbjct: 350 NATLHNEDEI-----------VRKDIRVGDTVTVERAGDVIPHVVSVDLKKRKQNSKKFI 398

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           FP  CP C S+ ++D N  T +  A  RC + G  C    +ER+KHFVS+DAFNI+G GK
Sbjct: 399 FPLKCPSCGSKTIKDYNETTKRQDAVRRCASEGFECEKIAIERIKHFVSKDAFNIDGFGK 458

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++ F+  +     +R+P DIF L      +  KIE + G+G +SV NL  SI K++NI
Sbjct: 459 KIVENFWNLK----LVRLPQDIFKL------NYNKIEELEGWGKLSVANLRFSIEKKKNI 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SLERFI+SLGIRH+G E A+ +A++  +  NF +          ++  SL  +  +G   
Sbjct: 509 SLERFIYSLGIRHIGQENAKLIARHLKTASNFFRLS------GENNIESLSNIDGIGITQ 562

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            Q+I +F+ N  N+  +  L K +         N +  ++NK  + TG L  I R +A+ 
Sbjct: 563 IQSIKKFFLNKTNLKVLSELEKNLLIKDVILINN-NGLLKNKTFMLTGKLNGISRAEAKS 621

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            + Q    + + +++K D +I GD P   K+  A++  +KI+N+ ++L +L +  
Sbjct: 622 LIEQNSGKIISNVNKKLDYLIAGDKPTLKKINTAKEWNIKIINQTEWLKMLNKSG 676


>gi|309808880|ref|ZP_07702761.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 01V1-a]
 gi|308167878|gb|EFO70015.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 01V1-a]
          Length = 672

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 214/718 (29%), Positives = 357/718 (49%), Gaps = 51/718 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L   
Sbjct: 1   MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP+    ++GG +   L KV H  P LS+  +++ ++L +F  RI +       + + +
Sbjct: 59  -DPDSITQRVGGNIKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVG----HVVDY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVR
Sbjct: 114 NVELKIDGLSLSLEYKVGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+     +              
Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD+
Sbjct: 232 ETITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G ++
Sbjct: 292 LALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P+
Sbjct: 352 SRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG 
Sbjct: 401 EIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +            +   AD++ L   Q         +  F D S+ NL ++I   +  
Sbjct: 454 KIVRQLI----ALHLVNDIADLYFLSAAQL------AKLDHFKDKSIQNLLNAIENSKQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  +F LGI HVGA+ AR +AK +       +               L+++  +G  I
Sbjct: 504 SVELLLFGLGIDHVGAKAARLIAKKFHDLNTIREC----------SIADLMQIDTIGQTI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           A+++V++++       ++ L               +    +  + K +V TG L    R 
Sbjct: 554 AESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSRA 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
              + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +  L    
Sbjct: 614 DLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVIAKLNSQK 671


>gi|241896133|ref|ZP_04783429.1| NAD-dependent DNA ligase [Weissella paramesenteroides ATCC 33313]
 gi|241870647|gb|EER74398.1| NAD-dependent DNA ligase [Weissella paramesenteroides ATCC 33313]
          Length = 675

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 218/716 (30%), Positives = 374/716 (52%), Gaps = 52/716 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +  +      +A +++  L+ ++      YY+   P + D+EYD + +R   +  AFP+L
Sbjct: 1   MTEVALTDPTEAAQQMEKLQLQLQQWAKEYYENDSPTVEDAEYDKVYKRLQELEAAFPEL 60

Query: 66  ARSEDPNGPLNKIGG-EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
               +P+    ++GG +    L KV H +P LSL  ++++++L  ++    + + +    
Sbjct: 61  V---NPDSITQQVGGHKTKSELPKVEHDVPMLSLGDVFSMDELTNWMVNTQKSFTE---- 113

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
            + +  E KIDG  I++ Y++G  V A+ RGDG+ GEDV++ I+ +  IP+ LS  +   
Sbjct: 114 ELIYNAELKIDGLAISLVYQEGLLVQASTRGDGNVGEDVTSNIKYVDDIPKKLSEPLS-- 171

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP--TDITRYLNFFVHG 242
           IEVRGE+Y+ K  F++LN+     G   +ANPRNAA+G LR+L+P  T   +   F    
Sbjct: 172 IEVRGEIYMPKEAFVSLNESRERDGLPTFANPRNAAAGSLRQLDPLITKKRKLSAFMYQV 231

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +     +  K Q E+L ++  LG P NN      +   + +Y     + R +L Y IDG+
Sbjct: 232 VDAPRSLNIKTQSELLIRLSQLGLPANNTNAVVTSTTDVENYIVSQTNHRDSLSYGIDGI 291

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV+  S  ++LG   + P+W I++KF  ++A T +  I+  +GRTG +TP A + PV 
Sbjct: 292 VIKVNNLSFHEELGNTVKVPKWAIAYKFPPEEAETIIQGIEWTVGRTGAVTPTAVMNPVQ 351

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++ A+LHN DY++            +DIR+GD V + +AG++IP+V  +I+  R 
Sbjct: 352 LAGTTVSRASLHNADYLQ-----------AKDIRIGDTVTLHKAGDIIPEVGKVIIERRP 400

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D+  +  P  CP C   +V            A RC    AC AQ  E L HF SR+A N
Sbjct: 401 EDSVLYELPKECPACHQSLVHVDGE------VALRCINP-ACPAQVQESLTHFASRNAMN 453

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GLG + +            I    D++ LQ     +      +  FGD +  NL ++I
Sbjct: 454 IDGLGPKIISQLLAH----GLITKVTDLYRLQYDDLIN------LDKFGDTAANNLLNAI 503

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           N  +N S+ER +F LGIR+VGA+ A+++A  + + +  A+               + ++P
Sbjct: 504 NLSKNNSVERLLFGLGIRNVGAKAAKTIATKFGNLKAIAEAT----------ADDIAKLP 553

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSE-IENKKLVFTGTLQK 660
            +G  I  ++ +++   +    +   ++ +V+         + +     KK+V TG+L  
Sbjct: 554 GMGLTIGDSVAQYFATEQAQQLLNDFIELKVNTEFTSQTAVIDNPMFSGKKIVLTGSLSL 613

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
             R  A  ++   GA+V++ +S+KTD++I G+N GSKL KAQ L ++I +E+Q   
Sbjct: 614 FSRRDASAWLESQGAIVASSVSKKTDLLIAGENAGSKLTKAQDLNIEIWSEKQLRD 669


>gi|254427631|ref|ZP_05041338.1| DNA ligase, NAD-dependent [Alcanivorax sp. DG881]
 gi|196193800|gb|EDX88759.1| DNA ligase, NAD-dependent [Alcanivorax sp. DG881]
          Length = 776

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 246/804 (30%), Positives = 379/804 (47%), Gaps = 123/804 (15%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +      ++   L  +++     YY    P + D+EYD   R    +   +PDL  +   
Sbjct: 1   MPNPDIIQKAQHLRDQLNDWSYRYYVQDDPAVPDAEYDRAFRELKDLEAQYPDLITA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G     +  +V H +P LSL+  ++ +DLR F  RI        D ++ +  E
Sbjct: 58  DSPTQRVGDVPLDAFEQVQHEVPMLSLDNAFDDDDLRAFDKRIRERLG--VDETVDYVAE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190
           PK+DG  I++ Y  G+ V AA RGDG +GE+++   R I ++P  L  +  P  +EVRGE
Sbjct: 116 PKLDGLAISLLYLDGQLVRAATRGDGQTGENITVNARTIRSVPLTLRGSQVPSRLEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK-TSE 248
           V +    F ALN    A  +K +ANPRNAA+G LR+L+     +R L F+ + + +    
Sbjct: 176 VVMPHAGFAALNARQEAAEQKVFANPRNAAAGSLRQLDSRITASRPLEFYAYSMAQLEGV 235

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  +ML+ +R  G  VN  VR       ++++Y  +   R  L YDIDG+VYKVD 
Sbjct: 236 PEPATHADMLEALRSWGLRVNPEVRVCAGVDALLAFYQGILEKRDHLDYDIDGVVYKVDR 295

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F  Q+ LG  +R+PRW I+HKF  ++  T L  +D Q+GRTG LTPVARLEPV++GG ++
Sbjct: 296 FDWQQDLGFVSRAPRWAIAHKFPAQEELTVLNGVDWQVGRTGALTPVARLEPVHVGGVIV 355

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L           DIR+GD V+V RAG+VIPKVV  +   R  DA+  
Sbjct: 356 SNATLHNIDEIQRL-----------DIRIGDTVVVYRAGDVIPKVVRALPERRPADARDI 404

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           + P  CP+C S ++R      G      RCTGGL C AQQ E +KHF SR A +I+GLG 
Sbjct: 405 ALPPSCPVCGSDILR------GDDQVVARCTGGLICGAQQREAIKHFASRRAMDIDGLGD 458

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +D     E     I   AD++ L+  Q         +   G+ S  NL  ++   + +
Sbjct: 459 KLVDALVDQE----LIATVADLYRLKAEQVAG------LERMGEKSADNLIAALETSKTV 508

Query: 549 SLERFIFSLGI--------------------------------RHVGAEIARSLAKYYLS 576
            L RF+F+LGI                                  VG E+A+++  ++  
Sbjct: 509 GLGRFLFALGILQIGEETAKNLADCFGDLEGIRRAPLLLLLAVPDVGMEVAKAIGAFFAE 568

Query: 577 ------YQNFAQEINNIIAH--------NNDDWLSLI--------RVPLVGDI------- 607
                       E  N  A         N+     L+         +  +GD        
Sbjct: 569 ADNEVVIDGLLAEGVNPQASGVPSAAFVNSLTLAQLLKSAKRLGMNLEGIGDKSLETLGG 628

Query: 608 ----IAQ----------------------AIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
               +A+                       +            ++    +V+    R   
Sbjct: 629 HFRTVAELSAAAAEGAGAEPKGVRSGVMTQLARALAENGWQARLQDAEDQVAALAARAPV 688

Query: 642 NVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
              S  +E +  V TGTL+++ R +A++ + QLGA V+  +S+ T  ++ G + GSKL K
Sbjct: 689 QAESRPLEGQTWVLTGTLEQLTRDQAKQALQQLGAKVAGSVSKNTSTVVAGASAGSKLAK 748

Query: 701 AQQLGVKIMNEEQFLFLLQQYNTT 724
           A+ LGV++ +E   L +L Q+   
Sbjct: 749 AESLGVEVCDEAALLSMLTQHGID 772


>gi|325913348|ref|ZP_08175716.1| DNA ligase (NAD+) [Lactobacillus iners UPII 60-B]
 gi|325477451|gb|EGC80595.1| DNA ligase (NAD+) [Lactobacillus iners UPII 60-B]
          Length = 672

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 213/718 (29%), Positives = 355/718 (49%), Gaps = 51/718 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L   
Sbjct: 1   MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLL-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP+    ++GG     L KV H  P LS+  +++ ++L +F  RI +       + + +
Sbjct: 59  -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVG----HVVDY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y+ GK V A+ RG+G  GEDV+A    I  IP+ L   I   IEVR
Sbjct: 114 NVELKIDGLSLSLEYKAGKLVRASTRGNGRIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+     +              
Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD+
Sbjct: 232 ETITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G ++
Sbjct: 292 LALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P+
Sbjct: 352 SRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG 
Sbjct: 401 EIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +            +   AD++ L   Q         +  F D S+ NL ++I   +  
Sbjct: 454 KIVRQLI----ALHLVNDIADLYFLSAAQL------AKLDHFKDKSIQNLLNAIENSKQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  +F LGI HVGA+ AR +AK +       +               L+++  +G  I
Sbjct: 504 SVELLLFGLGIDHVGAKAARLIAKKFHDLNTIREC----------SIADLMQIDTIGQTI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           A+++V++++       ++ L               +    +  + K +V TG L    R 
Sbjct: 554 AESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSRA 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
              + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +  L    
Sbjct: 614 DLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVIAKLNSQK 671


>gi|309804542|ref|ZP_07698607.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 09V1-c]
 gi|309809394|ref|ZP_07703256.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 2503V10-D]
 gi|312873385|ref|ZP_07733436.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2052A-d]
 gi|308165934|gb|EFO68152.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 09V1-c]
 gi|308170305|gb|EFO72336.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 2503V10-D]
 gi|311091069|gb|EFQ49462.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2052A-d]
          Length = 672

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 213/718 (29%), Positives = 356/718 (49%), Gaps = 51/718 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L   
Sbjct: 1   MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP+    ++GG     L KV H  P LS+  +++ ++L +F  RI +       + + +
Sbjct: 59  -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVG----HVVDY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVR
Sbjct: 114 NVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+     +              
Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD+
Sbjct: 232 ETITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G ++
Sbjct: 292 LALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P+
Sbjct: 352 SRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG 
Sbjct: 401 EIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +            +   AD++ L   Q         +  F D S+ NL ++I   +  
Sbjct: 454 KIVRQLI----ALHLVNDIADLYFLSAAQL------AKLDHFKDKSIQNLLNAIENSKQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  +F LGI HVGA+ AR +A+ +       +               L+++  +G  I
Sbjct: 504 SVELLLFGLGIDHVGAKAARLIAQKFHDLNTIREC----------SIADLMQIDTIGQTI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           A+++V++++       ++ L               +    +  + K +V TG L    R 
Sbjct: 554 AESMVKYFEQQSVKELMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSRA 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
              + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +  L    
Sbjct: 614 DLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVIAKLNSQK 671


>gi|256372325|ref|YP_003110149.1| DNA ligase, NAD-dependent [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008909|gb|ACU54476.1| DNA ligase, NAD-dependent [Acidimicrobium ferrooxidans DSM 10331]
          Length = 664

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 218/715 (30%), Positives = 348/715 (48%), Gaps = 55/715 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E A   +++L   I    + YY    PI+ D E+D L     A+  A P+L     P
Sbjct: 1   MT-ESAAARVAALRSLIQRASEAYYVADDPIMSDDEFDGLVLELRALEAAHPEL---RSP 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G     S   V H  P LSL+ +++ ++L  ++ R  R       +      E
Sbjct: 57  DSPTERVGAPPGSSFAPVRHRTPMLSLDNVFDADELDAWVERTRRGLG----HDPALFFE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190
            KIDG  +++ Y  G+   AA RGDG  GEDV+A    +  IPR L     P ++EVRGE
Sbjct: 113 LKIDGLALSLTYVDGRLAQAATRGDGEVGEDVTANALVVDAIPRRLKGVTGPGLVEVRGE 172

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           +++ ++ F ALN+       +P+ANPRNAA+G LR+ +P     R L+FF + L +    
Sbjct: 173 LFLPRSAFRALNER----VERPFANPRNAAAGSLRQKDPALTRDRGLSFFAYQLEEG--P 226

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                +E LQ +  +GF V            +      +   R  L YDIDG V KVD  
Sbjct: 227 SFDYHHEALQWLGEVGFQVEAHATPVGL-DELADKLAWLAEARDGLDYDIDGAVIKVDRL 285

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             + +LG    +PRWMI++KF  ++  TRL+ I++ +G++G +TP A L+PV +GG+ ++
Sbjct: 286 EDRVRLGTTTHAPRWMIAYKFPAEERPTRLVGIEVSVGKSGKVTPFAVLDPVRVGGSTVS 345

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN D I  L           D+RVGD V+V+RAGEVIP+VV  ++  R  DA P+ 
Sbjct: 346 RATLHNADQIARL-----------DVRVGDTVIVRRAGEVIPEVVRPVLELRPDDAVPWV 394

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP+ CP+C + +VRD            RC     C  Q ++RL HF SRDA +I+GLG+Q
Sbjct: 395 FPTTCPVCHTPLVRDRGE------VDWRCPNRR-CPEQLVQRLIHFASRDAMDIDGLGEQ 447

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
           +     +    A  + +P D++ L             + G    S+  L   I   R+  
Sbjct: 448 RARQLVE----AGLVVVPPDLYRLTDDDL------ARLPGVRHRSIERLRAGIEASRSRP 497

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R IF+L I +VG  +   +A    S                     L RV  +G ++A
Sbjct: 498 LGRVIFALAIDNVGQHVGMLVADVVGSLSGLRTVTE----------DELCRVEGIGPVVA 547

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            ++V F  +      ++ L +    +     +     +E    V TGT+  I R +    
Sbjct: 548 ASVVAFRDSDLGREILDKLERAGVGASADRPRAAGGPLEGLSFVLTGTVPGIGRAELAAL 607

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           + + G  V   +S++T  ++ G +PGSKL++A+  G+ +++ +    L+ +   +
Sbjct: 608 IEEHGGQVRTSVSQRTSYVVAGASPGSKLDEARARGIPVIDLDGLRELIDRRGGS 662


>gi|58617448|ref|YP_196647.1| DNA ligase [Ehrlichia ruminantium str. Gardel]
 gi|75356732|sp|Q5FG20|DNLJ_EHRRG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|58417060|emb|CAI28173.1| DNA ligase [Ehrlichia ruminantium str. Gardel]
          Length = 674

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 265/709 (37%), Positives = 403/709 (56%), Gaps = 43/709 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
             E+A+  L  L ++I YHD  YY    P I D+EYD L  +   I   FP L      N
Sbjct: 3   DQEEAKLILDKLNEKIRYHDLLYYTQDSPEISDAEYDDLCHQRSIILEKFPSL------N 56

Query: 73  GPLNK-IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                 IGG+ +    KV H+   LSL+  +N +D+ KF+ R  +    K++ S+ F+ E
Sbjct: 57  SYYQDYIGGDPDSRFSKVKHNERMLSLDNAFNKQDVEKFMVRTRKLLDMKENESLCFSCE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG   +I Y+ GK   A+ RG+G+ GE+++  ++ I  +P  +    P+ +EVRGEV
Sbjct: 117 LKIDGLSFSIIYKNGKLFQASTRGNGYFGENITNNVKTIENLPHTIQNA-PDFLEVRGEV 175

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           YI +NDF       +    K +ANPRNAA+G +R+L+PT    R L + ++ +  ++ + 
Sbjct: 176 YIDRNDF-----IQLNNEGKNFANPRNAAAGSIRQLDPTITAQRKLKYCMYTIVNSNCL- 229

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E L  +   GF  N      + F   +++YN+M + RS + YDIDG++YK++   
Sbjct: 230 --TQTESLNLLNSWGFCTNEHTISTDNFEEAINFYNKMYNNRSNISYDIDGIIYKINNIK 287

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ  LG  ++SPRW I++KF   +  T+L  I IQ+GRTG+LTP+A L P+NIGG +IT 
Sbjct: 288 LQHILGTTSKSPRWAIAYKFPAIEGKTKLNKISIQVGRTGVLTPIAELAPINIGGVVITR 347

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN+  I+            +DIR GD V+VKRAG+VIP+VVD+  + R  +   F+F
Sbjct: 348 ASLHNKSEIER-----------KDIREGDYVIVKRAGDVIPQVVDVDKSLRTVELAEFNF 396

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S V +           +  C GGL C  Q LE+++HFVS+DAFNI GLGK+Q
Sbjct: 397 PTACPACGSTVYQAQQE------VSIYCMGGLFCHNQILEKIRHFVSKDAFNIIGLGKKQ 450

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L FF++       I    DIFTL+ +      ++ +  G+G+ S+ NL  +IN  + I+L
Sbjct: 451 LLFFYEY----GLITNIIDIFTLEEKINNKNIQLSSFNGWGEKSINNLLSAINNSKVINL 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E FIFSLGIR VG  IA+ LA +++SY+N+  E+  +    N      I +  VG     
Sbjct: 507 ENFIFSLGIRFVGKHIAKILANHFISYKNWYTEMLKLAQDVNYT----INIQQVGLKTIN 562

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++  F+    N+  +  L++ ++    +    V S I  K +VFTG L  + R +A+   
Sbjct: 563 SLRTFFTEQHNLNMINNLVEHLTIIDAQSNSYV-SLIHGKTIVFTGELSSMSRSEAKLKS 621

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA VS+ LS+ TD +I+G+NPGSK +KAQ L ++I++E+ +L  +Q
Sbjct: 622 ETAGAKVSSSLSKNTDFLIIGNNPGSKYKKAQSLNIQILSEDIWLQYIQ 670


>gi|313904335|ref|ZP_07837713.1| DNA ligase, NAD-dependent [Eubacterium cellulosolvens 6]
 gi|313470885|gb|EFR66209.1| DNA ligase, NAD-dependent [Eubacterium cellulosolvens 6]
          Length = 670

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 202/714 (28%), Positives = 343/714 (48%), Gaps = 63/714 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E + L+++I YH D YY   +P I D EYD L           PD      P+ P  KI
Sbjct: 4   EEYNRLKEKIDYHMDRYYNLDEPEISDYEYDQLMIALKKAEKEHPDWI---SPDSPSQKI 60

Query: 79  GGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG     +  KVTH +P LS+E +++ E +  ++T++             F++E KIDG 
Sbjct: 61  GGTAKREAGVKVTHRVPMLSIEDVFDKEAVTAWVTKVRDL-----HPDAVFSVETKIDGL 115

Query: 138 MITIRYEK--G----KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            +T+RYEK  G    K + A  RGDG  GEDV+     IP + +       + +E+RGEV
Sbjct: 116 SMTLRYEKVAGTDSMKLMLAETRGDGLVGEDVTLNALVIPDV-QKTLKLPYDYLEIRGEV 174

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           Y++  DF   N+E   +G+K  ANPRN A+G LR+L+ +    R L  FV  +      F
Sbjct: 175 YMTHEDFDRFNEEQERLGKKLAANPRNLAAGTLRQLDASITKERGLRMFVFNVQDAPAEF 234

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L  +   G       R       +++  +E+  +R+ LPYDIDG V K+++ +
Sbjct: 235 LADHSAALDALAACGVQTVYH-RNCVNATEVLAAIDEIAEMRADLPYDIDGAVVKINQTA 293

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE------PVNIG 364
            +      ++     I++K+  ++    + +I + +GRTG LT            P  + 
Sbjct: 294 YRNDFPAGSKYSSGHIAYKYPPEERVVEMDEIIVNVGRTGKLTFTGSFHDAETGKPARLC 353

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ ATLHN+DYI  +            I VG    + ++GE+IPK+   +       
Sbjct: 354 GTSVSRATLHNQDYITEMS-----------IGVGGHYRLFKSGEIIPKLNGCVKEP---- 398

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              F  P  CP+C   ++R+ +       A  RC    +C AQ    + +F SR+  +I 
Sbjct: 399 ETVFVAPKTCPVCGHPLIREED------TADIRCVNP-SCPAQLSRTVAYFTSRNCMDIA 451

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG   ++   +       ++  ADI+ L+  +     K        + +   L D+I+ 
Sbjct: 452 GLGDTLVEALIRE----GYLKNYADIYKLRAYRDEMVEKGII---GKEKNTDKLLDAIDA 504

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +  +  R + +LGIR+VG+  A+ L K+Y S +  ++               L+++P +
Sbjct: 505 SKKQNPARLLTALGIRNVGSSTAKELMKHYASIRELSKAT----------AEELVQLPDI 554

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G   A  IVEF+ +  N+  ++ L K     +   E+  S ++    +V TGTL  + R 
Sbjct: 555 GSTTAGDIVEFFSDSENLRMIDELEKSGVNMVVEKEEGGSDKLAGMTIVVTGTLPTLGRS 614

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +A+E + + G   +  +S+KT +++ G+  GSKL KAQ+LG+K+++E + L ++
Sbjct: 615 EAKELIEKNGGKCTGSVSKKTTLLVAGEAAGSKLTKAQELGIKVISEAELLAMI 668


>gi|312875390|ref|ZP_07735394.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2053A-b]
 gi|311089053|gb|EFQ47493.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2053A-b]
          Length = 672

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 214/718 (29%), Positives = 357/718 (49%), Gaps = 51/718 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L   
Sbjct: 1   MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP+    ++GG +   L KV H  P LS+  +++ ++L +F  RI +       + + +
Sbjct: 59  -DPDSITQRVGGNIKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVG----HVVDY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVR
Sbjct: 114 NVELKIDGLSLSLEYKVGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+     +              
Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD+
Sbjct: 232 ETITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G ++
Sbjct: 292 LALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P+
Sbjct: 352 SRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG 
Sbjct: 401 EIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +            +   AD++ L   Q         +  F D S+ NL ++I   +  
Sbjct: 454 KIVRQLI----ALHLVNDIADLYFLSAAQL------AKLDHFKDKSIQNLLNAIENSKQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  +F LGI HVGA+ AR +AK +       +               L+++  +G  I
Sbjct: 504 SVELLLFGLGIDHVGAKAARLIAKKFHDLNTIREC----------SIADLMQIDTIGQTI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           A+++V++++       ++ L               +    +  + K +V TG L    R 
Sbjct: 554 AESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSRA 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
              + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +  L    
Sbjct: 614 DLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVVAKLNSQK 671


>gi|307720805|ref|YP_003891945.1| DNA ligase, NAD-dependent [Sulfurimonas autotrophica DSM 16294]
 gi|306978898|gb|ADN08933.1| DNA ligase, NAD-dependent [Sulfurimonas autotrophica DSM 16294]
          Length = 650

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 218/704 (30%), Positives = 364/704 (51%), Gaps = 58/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E     ++++     YY    PI+ D  YD L +  +    A P+       N P  +
Sbjct: 3   KQEYKQAVEKLNLWAYHYYVLDDPIMTDEVYDKLYKEVEQYEEAHPEDILK---NSPTQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  ++    K  H     SLE I++ + L+K++ ++YR      D+ + F  EPK DG 
Sbjct: 60  VGDVVSEGFAKEPHLSRMWSLEDIFDADGLKKWLEKVYRL-----DSHVTFYCEPKYDGA 114

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G+      RGDG  GE ++  ++ I T+P  LS+   E+IE+RGEV I K++
Sbjct: 115 SLNLVYENGELQKGITRGDGTVGERITQNVKTIHTVP--LSIEHKELIEIRGEVVIFKDE 172

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N E +  G  P+ANPRNAA+G LR+L+P+    R L F  +G+G  + +  K   +
Sbjct: 173 FDKINKERLKKGEPPFANPRNAAAGSLRQLDPSITAARNLVFLPYGVG-VNTLPHKLLND 231

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            +  +  LGF           +  I + Y  MK  R +    +DG+V KV+E + Q  +G
Sbjct: 232 KMSYIYELGFRKPPLRAITKGYDEIEAIYERMKEERESYSMMLDGMVVKVNEIAAQIDMG 291

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + PRW +++KF   +  TRL +I +Q+GRTG++TPVA +EP  I GA++  ATLHN 
Sbjct: 292 YTVKVPRWAVAYKFPAVEKITRLKNIILQVGRTGVVTPVAVVEPTEIEGAVVERATLHNF 351

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ +           DIR+GD+V++ R+G+VIPK+V ++  ER         P+ CP+
Sbjct: 352 DEIERM-----------DIRIGDQVIILRSGDVIPKIVKVLTQERDGSEVKIERPTHCPV 400

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++++                 L C A+ +  + +F S+   NI+GLG + ++  F 
Sbjct: 401 CGSELLQEE---------VLIKCQNLKCEARVVNSIIYFASKQCLNIDGLGNKIVEQLFN 451

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +R   D+F+L +       K+  + GF +    NL  SI   +   L RFI +
Sbjct: 452 ----AGLVRSVLDLFSLTQE------KLLELEGFKEKKAQNLLRSIENAKGCELWRFINA 501

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   ++ +A+ +             + + + +   L+ +  +GD +A++ +EF 
Sbjct: 502 LGIEHIGEVASKRIAEAFG------------LEYIHQNKEQLLTIEGIGDEMAESYLEFM 549

Query: 617 QNPRNICAVEALLKEVSP-SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +   N   V  L + + P    + E+   +  + K++V TGT+ +  R   +E +  LGA
Sbjct: 550 RV--NEETVVKLQEILRPVEPKKREEAQDNPFKGKRIVLTGTMSE-PRPVIKEKLEDLGA 606

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            VS  +S+KTD +I G++ GSK +KA  LGVK + E++   LLQ
Sbjct: 607 KVSGSVSKKTDYVIYGEDAGSKYDKAISLGVKTLTEDELKELLQ 650


>gi|259501108|ref|ZP_05744010.1| DNA ligase [Lactobacillus iners DSM 13335]
 gi|302190444|ref|ZP_07266698.1| DNA ligase [Lactobacillus iners AB-1]
 gi|259167802|gb|EEW52297.1| DNA ligase [Lactobacillus iners DSM 13335]
          Length = 672

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 213/718 (29%), Positives = 356/718 (49%), Gaps = 51/718 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L   
Sbjct: 1   MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP+    ++GG     L KV H  P LS+  +++ ++L +F  RI +       + + +
Sbjct: 59  -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVG----HVVDY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVR
Sbjct: 114 NVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+     +              
Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTYIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD+
Sbjct: 232 ETITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G ++
Sbjct: 292 LALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P+
Sbjct: 352 SRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRLQASLPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG 
Sbjct: 401 EIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +            +   AD++ L   Q         +  F D S+ NL ++I   +  
Sbjct: 454 KIVRQLI----ALHLVNDIADLYFLSAAQL------AKLDHFKDKSIQNLLNAIENSKQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  +F LGI HVGA+ AR +A+ +       +               L+++  +G  I
Sbjct: 504 SVELLLFGLGIDHVGAKAARLIAQKFHDLNTIRKC----------SIADLMQIDTIGQTI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           A+++V++++       ++ L               +    +  + K +V TG L    R 
Sbjct: 554 AESMVKYFEQQSVKELMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSRA 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
              + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +  L    
Sbjct: 614 DLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVIAKLNSQK 671


>gi|325911416|ref|ZP_08173828.1| DNA ligase (NAD+) [Lactobacillus iners UPII 143-D]
 gi|325476766|gb|EGC79920.1| DNA ligase (NAD+) [Lactobacillus iners UPII 143-D]
          Length = 672

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 213/718 (29%), Positives = 356/718 (49%), Gaps = 51/718 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L   
Sbjct: 1   MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP+    ++GG     L KV H  P LS+  +++ ++L +F  RI +       + + +
Sbjct: 59  -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVG----HVVDY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVR
Sbjct: 114 NVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+     +              
Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD+
Sbjct: 232 ETITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G ++
Sbjct: 292 LALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P+
Sbjct: 352 SRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG 
Sbjct: 401 EIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +            +   AD++ L   Q         +  F + S+ NL ++I   +  
Sbjct: 454 KIVRQLI----ALHLVNDIADLYFLSATQL------AKLDHFKEKSIQNLLNAIENSKQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  +F LGI HVGA+ AR +AK +       +               L+++  +G  I
Sbjct: 504 SVELLLFGLGIDHVGAKAARLIAKKFHDLNTIREC----------SIADLMQIDTIGQTI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           A+++V++++       ++ L               +    +  + K +V TG L    R 
Sbjct: 554 AESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSRA 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
              + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +  L    
Sbjct: 614 DLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVIAKLNSQK 671


>gi|329920507|ref|ZP_08277239.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 1401G]
 gi|328936183|gb|EGG32636.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 1401G]
          Length = 672

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 213/718 (29%), Positives = 356/718 (49%), Gaps = 51/718 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L   
Sbjct: 1   MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP+    ++GG     L KV H  P LS+  +++ ++L +F  RI +       + + +
Sbjct: 59  -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVG----HVVDY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVR
Sbjct: 114 NVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN +    G   +ANPRNAA+G LR+L+     +              
Sbjct: 172 GECYMDKATFAKLNFKRDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD+
Sbjct: 232 ETITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G ++
Sbjct: 292 LALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P+
Sbjct: 352 SRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG 
Sbjct: 401 EIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +            +   AD++ L   Q         +  F D S+ NL ++I   +  
Sbjct: 454 KIVRQLI----ALHLVNDIADLYFLSAAQL------AKLDHFKDKSIQNLLNAIENSKQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  +F LGI HVGA+ AR +AK +       +               L+++  +G  I
Sbjct: 504 SVELLLFGLGIDHVGAKAARLIAKKFHDLNTIREC----------SIADLMQIDTIGQTI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           A+++V++++       ++ L               +    +  + K +V TG L    R 
Sbjct: 554 AESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSRA 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
              + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +  L    
Sbjct: 614 DLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVVAKLNSQK 671


>gi|150388772|ref|YP_001318821.1| NAD-dependent DNA ligase LigA [Alkaliphilus metalliredigens QYMF]
 gi|190359225|sp|A6TLU4|DNLJ_ALKMQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149948634|gb|ABR47162.1| DNA ligase, NAD-dependent [Alkaliphilus metalliredigens QYMF]
          Length = 660

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 206/708 (29%), Positives = 353/708 (49%), Gaps = 60/708 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KE+  L ++++ +   YY   +PI+ D EYD+L  +   +      +      + P  ++
Sbjct: 5   KEMEQLVKQLNEYSYKYYVLDQPIVSDKEYDSLYDQLIELEEKTGHVLL----DSPTQRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE         H     SL+K    E+L  +  RI +    + ++ I + +E K DG  
Sbjct: 61  GGEPLKKFQSHQHVALLWSLDKAKTAEELVAWEQRIKKKL--ESNHEIEYIVEYKFDGLT 118

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + YE G+ V AA RG+G  GE +   ++ I  IP  +  +    +E++GE  ++ +  
Sbjct: 119 LNLTYENGELVQAATRGNGVVGESIIEQVKTIQAIPLGV--DFNNKMEIQGEGLMAISTL 176

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
              N       ++P  NPRNAA+G LR L+P     R L  F + +G    +  +   +M
Sbjct: 177 AQYNKTA----KEPLKNPRNAAAGALRNLDPKVTAKRKLGAFCYSIGYYEGMEFETHIQM 232

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           +  ++   FPV+N ++       ++    E+++    L Y  DG+V KV++   ++ LG 
Sbjct: 233 IDFLKKNRFPVSNYIKSCKGIDQVIEQIREVEAGMKELDYLTDGIVIKVNDLRTREILGY 292

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             + PRW I++KF  ++ +T+L  +  Q+GRTG LTP A+LEPV I G  ++ ATL+N +
Sbjct: 293 TQKFPRWAIAYKFEAQEVTTKLEAVLWQVGRTGKLTPAAQLEPVEIAGVTVSRATLNNWE 352

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            + ++VG +V ++R+G+VIP+++  I      +A     P  CP C
Sbjct: 353 DIQR-----------KKVKVGCQVWLRRSGDVIPEIMGAIEET-CEEAVEIEKPQHCPAC 400

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +V               C   L+C  Q + R+ H+ SRDA +IEG  ++  +  F+ 
Sbjct: 401 DSEIVHR--------GVHIFCPNSLSCKPQLVSRIVHYASRDAMDIEGFSEKTAEQLFE- 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  ++  A ++ L+            +  FGD    NL D+I + +   L+ FI++L
Sbjct: 452 ---ALGLKNIAALYELKYEDLI------QLERFGDKKAKNLLDAIEESKTCKLDAFIYAL 502

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI +VG + A  LA Y+   +   +           ++  L+ +P +G I+AQ+IV F++
Sbjct: 503 GIPNVGRKTAADLANYFGDLEKIQRA----------NYDELVVLPDIGGIVAQSIVGFFE 552

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
           + + I ++E LL E      + +    S    K +V TGTL+   R + Q  + + GA V
Sbjct: 553 DEKIIKSIELLLAEGIKPQHKMKNRQESIFSGKTVVVTGTLENYGRKEIQTLLEEQGAKV 612

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQL---GVK----IMNEEQFLFLL 718
           S  +S+ TD +I GDN GSKL+KAQ++   GV+    I++E  F  LL
Sbjct: 613 SGSISKNTDFVIAGDNAGSKLKKAQEILESGVETNLQILDEAAFEALL 660


>gi|289581750|ref|YP_003480216.1| DNA ligase, NAD-dependent [Natrialba magadii ATCC 43099]
 gi|289531303|gb|ADD05654.1| DNA ligase, NAD-dependent [Natrialba magadii ATCC 43099]
          Length = 699

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 230/722 (31%), Positives = 359/722 (49%), Gaps = 48/722 (6%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             P E LS ++A +++  L   I  HD  YY  + P+I D  YD L  R   +   F   
Sbjct: 21  FEPPEQLSDDEAEQQVEQLRDAIREHDRRYYVENDPLIADRTYDTLFERLQVLESTFD-- 78

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
                P+ P   +GGE   +   V H  P LS+++     D+R+F  R+ R     +  +
Sbjct: 79  --LSHPDSPTRSVGGEPIEAFETVEHEAPMLSIDQSGEEADVREFDERVRR-----EVGA 131

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + +  EPK DG  +   YE G    A  RGDG  G+DV+   R I ++P+ L  + P+ +
Sbjct: 132 VDYVCEPKFDGVSMEFVYEDGSLQRAVTRGDGREGDDVTRNARTIGSVPQKLHGDYPDFL 191

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245
            VRGEV++ K+ F   N E I  G +P+ANPRNA +G +R+L+P  +        +    
Sbjct: 192 AVRGEVFMPKDAFQEHNRERIERGEEPFANPRNATAGTIRQLDPEIVAERPLDVFYFDVL 251

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            +        E L++    G  V + V   +     ++Y + M   R  L Y+IDG V K
Sbjct: 252 AASELEDSHREELERFPEFGLRVTDHVEIVDDIDDAIAYRDRMLEARDDLNYEIDGTVIK 311

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   +++LG  AR  R+  ++KF  +   T + D+ +QIGRTG +TPVA LEPV++GG
Sbjct: 312 VDDRDAREELGRTARHDRYAFAYKFPARAEVTPIADVAVQIGRTGRVTPVALLEPVDVGG 371

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD- 424
             ++ A+LHN + I             + + +GD V V+RAG+VIP V ++I      D 
Sbjct: 372 VTVSRASLHNPEEI-----------AEKTVAIGDTVRVQRAGDVIPYVEEVIEKGADNDP 420

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
              +  P  CP+C S +         +      CTGGLAC AQ    ++++ S    ++E
Sbjct: 421 ESHYELPDHCPVCDSAI--------ERDGPMAFCTGGLACDAQLRRSIEYYASDGGLDLE 472

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GLG++ +         A  +   AD++ L+  + T+      + G+GD S  NL   I  
Sbjct: 473 GLGEKSVRQLVD----AGLVESIADLYELECEELTA------LEGWGDTSAENLLSEIEA 522

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R   L  F+ +LGI HVG   AR LA+ + +++   +          DD  +L  V  V
Sbjct: 523 SREPPLADFLSALGIPHVGPTTARELAREFGTFEAVREAAE-------DDPAALEGVDDV 575

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G+ +A+ I EF+ +  N  AV  +L  VSP     E +   E++    VFTG+L  + R 
Sbjct: 576 GETVAETIHEFFASEANAAAVADILAHVSPQESDLE-SGGDELDGLTFVFTGSLADVTRS 634

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +AQE V   GA  +  +S  TD ++VG+NPG +K E A++  V I++E +F  LL +   
Sbjct: 635 EAQETVEAHGANATGSVSGNTDYLVVGENPGATKREDAEENDVPIIDESEFRELLAERGI 694

Query: 724 TL 725
            L
Sbjct: 695 GL 696


>gi|330984116|gb|EGH82219.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 675

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 232/708 (32%), Positives = 362/708 (51%), Gaps = 48/708 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
             + L   I + +  Y+   +P I D+EY+AL +   AI  A P     + P+ P  KIG
Sbjct: 6   RAAELRHLIDHANYRYHVLDEPTITDNEYNALFQELLAIEAADP---TQQTPDSPTQKIG 62

Query: 80  GEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +    L  V H++  LSL+  +   D +KF+  I     +   + + +  EPK DG  
Sbjct: 63  GYVAVGGLQPVKHAVRMLSLDNAFEDADFQKFVKAIE---AEMGIDQLEYVCEPKYDGLA 119

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +++ Y  G     A RGDG +GEDV+  +R +  IP  L  + P  +EVRGEVY+ ++ F
Sbjct: 120 VSLIYIDGVLTRGATRGDGETGEDVTHTVRTVKNIPLKLRGDFPAYVEVRGEVYMPRDGF 179

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEM 257
            ALN   I  G K YANPRNAA+G LR+L+ T   +R L F  + L     I  K   E 
Sbjct: 180 EALNQRQIEQGLKTYANPRNAAAGSLRQLDSTVSASRPLEFCAYSLVGAEGIRPKTHIEA 239

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           +Q ++  G P+  G+     F  +   + E+   R TL YDIDG+V+K+++  LQ++LG 
Sbjct: 240 MQIIQGWGVPITPGLEVIKGFEAVKLAWEELLKRRPTLNYDIDGIVFKLNDIELQEELGF 299

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             R PRW I+ KF  ++  T L+ +D+QIGRTG  TPVAR++PV +GG +++N TLHN D
Sbjct: 300 VGRVPRWAIAWKFPAEEVDTVLIQVDVQIGRTGAATPVARVKPVQVGGVVVSNVTLHNWD 359

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            +K L           D+  GD V+++RAG+VIP+++  + ++R P A+P + P+ CP C
Sbjct: 360 EVKRL-----------DLHEGDTVIIRRAGDVIPQMMMSVADKRIPGAKPIAAPTHCPRC 408

Query: 438 QSRVVRDLNPKTGKLV------AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            S ++ D +    K V      A  RC GG+AC AQ+ E + + VSR+  +I+GLGK  +
Sbjct: 409 NSEILNDTDLVKKKGVYVEVTLAYRRCQGGIACDAQREEMIINAVSREVLDIDGLGKTTV 468

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                       ++  +D+F L             + G  + SV  L  SI K +   L 
Sbjct: 469 KTLCD----LGILKDLSDVFALTYDDLIK------VEGMAEASVNKLLASIEKSKQTELP 518

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           RF+ SLGIR  G    + LAK +LS+              N  +  L+ +   G   A  
Sbjct: 519 RFLRSLGIREAGETTGKVLAKTFLSFDQIV----------NKSFDDLVALEDFGPKKAGY 568

Query: 612 IVEFYQ-NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +V+ +      +   + +L          +++ S  +  +  V TGTL  + R +A+  +
Sbjct: 569 LVKAFAPGSPVLEMAQRMLALGVTIAPVEQQDTS--LAGRTYVLTGTLSHMSRGEAKARL 626

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              GA  S  + +KT  +I G + G KL +A  LG+ ++ EE  + L+
Sbjct: 627 EAKGAKTSGSVGKKTTALIAGADGGGKLTEAANLGIPVLYEEDLMKLI 674


>gi|57239421|ref|YP_180557.1| DNA ligase [Ehrlichia ruminantium str. Welgevonden]
 gi|58579393|ref|YP_197605.1| DNA ligase [Ehrlichia ruminantium str. Welgevonden]
 gi|81352823|sp|Q5HAI7|DNLJ_EHRRW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|57161500|emb|CAH58426.1| NAD-dependent DNA ligase [Ehrlichia ruminantium str. Welgevonden]
 gi|58418019|emb|CAI27223.1| DNA ligase [Ehrlichia ruminantium str. Welgevonden]
          Length = 674

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 265/709 (37%), Positives = 403/709 (56%), Gaps = 43/709 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
             E+A+  L  L ++I YHD  YY    P I D+EYD L  +   I   FP L      N
Sbjct: 3   DQEEAKLILDKLNEKIRYHDLLYYTQDSPEISDAEYDDLCHQRSIILEKFPSL------N 56

Query: 73  GPLNK-IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                 IGG+ +    KV H+   LSL+  +N +D+ KF+ R  +    K++ S+ F+ E
Sbjct: 57  SYYQDYIGGDPDSRFSKVKHNERMLSLDNAFNKQDVEKFMVRTRKLLDMKENESLCFSCE 116

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG   +I Y+ GK   A+ RG+G+ GE+++  ++ I  +P  +    P+ +EVRGEV
Sbjct: 117 LKIDGLSFSIIYKNGKLFQASTRGNGYFGENITNNVKTIENLPHTIQNA-PDFLEVRGEV 175

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           YI +NDF       +    K +ANPRNAA+G +R+L+PT    R L + ++ +  ++ + 
Sbjct: 176 YIDRNDF-----IQLNNEGKNFANPRNAAAGSIRQLDPTITAQRKLKYCMYTIVNSNCL- 229

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q E L  +   GF  N      + F   +++YN+M + RS + YDIDG++YK++   
Sbjct: 230 --TQTESLNLLNSWGFCTNEHTISTDNFEEAINFYNKMYNNRSNISYDIDGIIYKINNIK 287

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ  LG  ++SPRW I++KF   +  T+L  I IQ+GRTG+LTP+A L P+NIGG +IT 
Sbjct: 288 LQHILGTTSKSPRWAIAYKFPAIEGKTKLNKISIQVGRTGVLTPIAELAPINIGGVVITR 347

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN+  I+            +DIR GD V+VKRAG+VIP+VVD+  + R  +   F+F
Sbjct: 348 ASLHNKSEIER-----------KDIREGDYVIVKRAGDVIPQVVDVDKSLRTVELAEFNF 396

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S V +           +  C GGL C  Q LE+++HFVS+DAFNI GLGK+Q
Sbjct: 397 PTACPACGSTVYQAQQE------VSIYCMGGLFCHNQILEKIRHFVSKDAFNIIGLGKKQ 450

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L FF++       I    DIFTL+ +      ++ +  G+G+ S+ NL  +IN  + I+L
Sbjct: 451 LLFFYEY----GLITNIIDIFTLEEKINNKNIQLSSFNGWGEKSINNLLSAINNSKVINL 506

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E FIFSLGIR VG  IA+ LA +++SY+N+  E+  +    N      I +  VG     
Sbjct: 507 ENFIFSLGIRFVGKHIAKILANHFISYKNWYTEMLKLAQDVNYT----INIQQVGLKTIN 562

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++  F+    N+  +  L++ ++    +    V S I  K +VFTG L  + R +A+   
Sbjct: 563 SLRTFFIEQHNLNMINNLVEHLTIIDAQSNSYV-SLIHGKTIVFTGELSSMSRSEAKLKS 621

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              GA VS+ LS+ TD +I+G+NPGSK +KAQ L ++I++E+ +L  +Q
Sbjct: 622 ETAGAKVSSSLSKNTDFLIIGNNPGSKYKKAQSLNIQILSEDIWLQYIQ 670


>gi|94986686|ref|YP_594619.1| NAD-dependent DNA ligase [Lawsonia intracellularis PHE/MN1-00]
 gi|123385090|sp|Q1MRS8|DNLJ_LAWIP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94730935|emb|CAJ54298.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 682

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 244/718 (33%), Positives = 383/718 (53%), Gaps = 52/718 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P  +L  ++ ++ +  L + I++H+  YY    P I DSEYD   +    + + FP L  
Sbjct: 6   PQYSLPSKKEKQRVRELRKFINHHNYLYYTLDDPEISDSEYDKAFQELLTLENTFPSLKT 65

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           +   N P  K+G  +   L +  H     SL+ +++ ++   F+ R+     +       
Sbjct: 66  N---NSPTQKVGNNILKKLEEQPHRQRMYSLDNVFSNDEWEGFLKRLANALPEV---PFS 119

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV--LSLNIPEII 185
           F  +PK+DG  + + YEKG+   A  RGDG  GE V+  +R I  IP+    S+N PE++
Sbjct: 120 FWCDPKMDGLALELIYEKGQLTSALTRGDGDIGEVVTEAVRTISNIPKRLKHSINAPELL 179

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           E+RGEV IS+ DF  LN E     +K +ANPRNAASG +R+L+PT   +R L F  +G+G
Sbjct: 180 EIRGEVVISRADFKKLNKEQEKKKKKLFANPRNAASGSVRQLDPTITASRPLRFLAYGIG 239

Query: 245 --KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
             + S +     +E++  ++  GF      +   +   + SYY  +++ R +L Y+IDG+
Sbjct: 240 EIQPSSLKWNTYHELMSYLKEYGFETPPKGKLCISSTEVQSYYTRLQAQRYSLRYEIDGI 299

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V K+D+   Q++LG  +R+PR+ I+ KF   Q  TRLL I IQ+GRTG+LTPVA LEP+N
Sbjct: 300 VMKLDDIQSQEKLGYTSRAPRFAIAWKFPATQVQTRLLQIHIQVGRTGVLTPVAELEPIN 359

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GGA I+ ATLHNED IK            +DIR GD V+V+RAG+VIP++V  I+++R 
Sbjct: 360 VGGATISRATLHNEDEIK-----------NKDIRPGDMVIVQRAGDVIPEIVSPILSDRS 408

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             ++PF FP  CP+C  +V R  N        A RC   L+C A +L+ + +FVS+   N
Sbjct: 409 AKSKPFVFPKICPVCHEKVYRINNE------VAWRCIN-LSCPAIRLQSIIYFVSKSGLN 461

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+G+G++ ++        +  I+ PAD+FTL      +          G         ++
Sbjct: 462 IQGIGQRLIELLV----TSGCIKTPADLFTLTTADLLTY------KRMGAKLAAKTIQAL 511

Query: 543 NKRRNISL-ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           +  +      R I +LGIRHVG + AR LA  ++     +                L ++
Sbjct: 512 SLAKQTMSLHRLICALGIRHVGEQTARILASSFIDLDALSSA----------SLEDLQQL 561

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
             +G  +A +I  F++N  NI  +    +  + P    ++         KKL+FTGTL++
Sbjct: 562 SEIGPEVASSIQAFFKNKANIQMINQFREMNIWPIQQVNDTTTKGFFTGKKLLFTGTLER 621

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             R + +    + GA+V   +S K D +I G NPGSKL KAQ+L + I++E  FL  L
Sbjct: 622 -PRAEMKRLAEEAGAIVMTGISHKLDYVIAGKNPGSKLNKAQELHISILDEPTFLQKL 678


>gi|315653834|ref|ZP_07906750.1| NAD-dependent DNA ligase LigA [Lactobacillus iners ATCC 55195]
 gi|315488530|gb|EFU78176.1| NAD-dependent DNA ligase LigA [Lactobacillus iners ATCC 55195]
          Length = 672

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 213/718 (29%), Positives = 356/718 (49%), Gaps = 51/718 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L   
Sbjct: 1   MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP+    ++GG     L KV H  P LS+  +++ ++L +F  RI +       + + +
Sbjct: 59  -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVG----HVVDY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVR
Sbjct: 114 NVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+     +              
Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD+
Sbjct: 232 ETITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G ++
Sbjct: 292 LALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P+
Sbjct: 352 SRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG 
Sbjct: 401 EIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +            +   AD++ L   Q         +  F D S+ NL ++I   +  
Sbjct: 454 KIVRQLI----ALHLVNDIADLYFLSAAQL------AKLDHFKDKSIQNLLNAIENSKQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  +F LGI HVGA+ AR +A+ +       +               L+++  +G  I
Sbjct: 504 SVELLLFGLGIDHVGAKAARLIAQKFHDLNTIREC----------SIADLMQIDTIGQAI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           A+++V++++       ++ L               +    +  + K +V TG L    R 
Sbjct: 554 AESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKLAHYSRA 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
              + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +  L    
Sbjct: 614 DLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVIAKLNSQK 671


>gi|120602092|ref|YP_966492.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
 gi|166215378|sp|A1VC99|DNLJ1_DESVV RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|120562321|gb|ABM28065.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
          Length = 680

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 235/713 (32%), Positives = 367/713 (51%), Gaps = 55/713 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +   + L  E++ H+  YY+   P I D+EYD L R    +   +P L    D   P  +
Sbjct: 8   QSRAAWLRAELARHNRLYYELDTPEISDAEYDTLYRELVNLETLWPALM---DEASPTQR 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE+   L K  H++   SL+  ++ ++   FI R+Y    +       F  +PK+DG 
Sbjct: 65  VGGEVLDRLEKQAHTMRMYSLDNAFSRDEWGAFIQRMYNTLPET---PSSFWCDPKMDGL 121

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKN 196
            + + YE G F  A  RG+G  GE V+A +R +  +P  L  N  P  +EVRGEV I+K 
Sbjct: 122 ALEVIYENGVFTSALTRGNGAEGEVVTAAMRTVRNLPLRLRGNNVPHRLEVRGEVVIAKA 181

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS----EIFA 251
           DF  LN    AVG K +ANPRNAA+G +R+L+ +    R L F  +G+G+          
Sbjct: 182 DFEQLNARQSAVGGKVFANPRNAAAGSVRQLDTSITAGRPLQFLAYGVGQVVLDGGTAPW 241

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               +++ ++R  GF      R   +   + +YY  + + R +L  +IDG+V KVD+   
Sbjct: 242 TTHSDLMARLREWGFDSPPEGRLCTSPDEVWAYYEMLGARRESLAIEIDGVVAKVDDTEA 301

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG  AR+PRW ++ KF   Q  TRL DI +Q+GRTG+LTPVA LEPV +GG  ++ A
Sbjct: 302 QEALGFTARAPRWALALKFPAMQVRTRLQDIRVQVGRTGVLTPVAILEPVRVGGVEVSRA 361

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   I+            + + +GD VLV+RAG+VIP+VV  +V +R    +PF FP
Sbjct: 362 TLHNAYEIE-----------DKGLMLGDMVLVQRAGDVIPEVVRPLVEDRTGGERPFVFP 410

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S V +  +        AHRC    +C A + + + HFVS+   ++ G G+  +
Sbjct: 411 TTCPECGSVVHKPNDE------VAHRCINV-SCPAVRRQSIIHFVSKAGLDVRGFGEHIV 463

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN-ISL 550
                    A  +   AD+F+L                 G  S  N   S++  R   +L
Sbjct: 464 QQLVD----AGRVTTAADLFSLTTVDLMGF------ERMGPTSAANAIASLDAARTGATL 513

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R I +LGIRHVG + AR+LA +++      +           D   L+ +P +G  +A 
Sbjct: 514 ARLICALGIRHVGEQTARTLATHFVDLDAMRKA----------DGEKLLHLPDIGPEVAA 563

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKA 666
           +I  F+ N  NI  +E L  +                 S+++  KL+FTG+LQ++ R +A
Sbjct: 564 SIRCFFDNQSNIELLEQLRDKGLWPRKPDANGPFVREGSQLQGLKLLFTGSLQRMSRSEA 623

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +      GA V + +S+  D+I+ G + GSKL++A+ LG+ +++E+ F  LL+
Sbjct: 624 KRMAEAAGAHVVSNVSKSLDMIVAGADAGSKLDQAKSLGLHVIDEDAFANLLK 676


>gi|296393986|ref|YP_003658870.1| DNA ligase, NAD-dependent [Segniliparus rotundus DSM 44985]
 gi|296181133|gb|ADG98039.1| DNA ligase, NAD-dependent [Segniliparus rotundus DSM 44985]
          Length = 690

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 216/723 (29%), Positives = 341/723 (47%), Gaps = 54/723 (7%)

Query: 12  LSIEQA------RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +S  +A       +   +L  EI  H   YY    P + D+++D L R    +       
Sbjct: 1   MSKGKAPARLDPAQRWRALADEIREHQFRYYVLDSPTVTDAQFDVLLRELQELEEE---H 57

Query: 66  ARSEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
                 + P   +GG        +V H  P LSL+ +++ E L  +  R     ++    
Sbjct: 58  PELASADSPTKLVGGAGFTTDFAEVGHIEPMLSLDNVFDEEGLLAWAQRTSNAAER---- 113

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV----LSLN 180
           +I F  E KIDG  +++ YE G+   AA RGDG +GEDV+  +R I  +P          
Sbjct: 114 AIRFECELKIDGLGVSLVYEHGRLARAATRGDGRTGEDVTLNVRTIGDVPHELRLAPGEA 173

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            PE++EVRGEV+    DF ALN  ++A G+ P+ANPRN+A+G LR+ NP     R L   
Sbjct: 174 PPELLEVRGEVFFRLKDFEALNASLVAEGKPPFANPRNSAAGSLRQKNPAVTAKRNLTML 233

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            H  G TS      +    +K+R  G PV+      +T   ++ +     + R+ + Y+I
Sbjct: 234 CHSFGATSSWKPATRSAAYEKLREWGLPVSEYNTTLDTPEAVLEHIRAWGNRRAEIAYEI 293

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DGLV KV+E  L  QLG  +R+PRW I++K+  ++  T+L DI + +GRTG +TP A ++
Sbjct: 294 DGLVVKVEEMDLYGQLGHTSRAPRWAIAYKYPPQEVQTKLRDIRVNVGRTGRVTPFAFMD 353

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G+ ++ ATLHN   ++            + + +GD V++++AG+VIP+V+  +  
Sbjct: 354 PVLVAGSTVSLATLHNASEVER-----------KGVLIGDTVVLRKAGDVIPEVLGPVAA 402

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R    + F  P  CP C +++         +     RC     C AQ  ER+ H   R 
Sbjct: 403 LRDGTERQFVMPDVCPECGTKLA-----PAKESDVDIRCPNARTCPAQLRERVFHVAGRG 457

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQR----RQQTSTTKIENILGFGDVSV 535
           AF+IE LG +      K +     I    D+F L      R +          G    + 
Sbjct: 458 AFDIEALGYEAATDLLKHQ----VIEDEGDLFDLDEQRLLRTEIFVNTSGKNAGKLSANG 513

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
             L  ++ + +N  L R + +L IRHVG   AR+LA  + S                 D 
Sbjct: 514 QKLLHNLEQAKNRDLWRVLVALSIRHVGPTAARALATRFGSVDAIFSA----------DE 563

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
            +L  V  VG  IA +++E++Q   +   +              E+ +   +    +V T
Sbjct: 564 QTLAEVDGVGPTIAASVIEWFQVDWHRSILARWAAAGVKMAEEREE-LPQTLAGLTIVVT 622

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G+L+   R   QE +   G   S  +S+KT  ++ G+  GSK EKA+QLGV +++E  FL
Sbjct: 623 GSLEGFTRESVQEAIIARGGKASGSVSKKTSYVVAGEGGGSKREKAEQLGVPVIDEAAFL 682

Query: 716 FLL 718
            LL
Sbjct: 683 KLL 685


>gi|24379931|ref|NP_721886.1| NAD-dependent DNA ligase LigA [Streptococcus mutans UA159]
 gi|81451132|sp|Q8DT49|DNLJ_STRMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|24377912|gb|AAN59192.1|AE014986_3 DNA ligase [Streptococcus mutans UA159]
          Length = 652

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 219/701 (31%), Positives = 345/701 (49%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ ++ L Q ++ +   YY    P + D+EYD L R    +   FP+      PN P ++
Sbjct: 2   KERMNELVQLLNQYAREYYTKDNPSVSDAEYDKLYRELVELEKEFPEDIL---PNSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  +     K  H  P  SL+  ++ E+L  F  RI       +     +  E KIDG 
Sbjct: 59  VGDLVLDGFEKYRHEYPLFSLQDAFSREELDAFDRRIK-----AEFPQADYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G+    A RGDG  GE+++  ++ +  IP  L  NI   + VRGE Y+ K  
Sbjct: 114 SISLTYVNGRLRVGATRGDGTVGENITENLKRVRDIPLHLPENI--DLTVRGECYLPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N E    G   +ANPRNAA+G LR+L+   +            +     A  Q  +
Sbjct: 172 FKTINAERRENGETEFANPRNAAAGTLRQLDTKVV-AKRKLATFIYQEAGPTAASSQEAV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+    LGF VN     +++   I  +  ++   R+ L YDIDG+V KV+  +LQ+ LG 
Sbjct: 231 LESFAKLGFTVNPRHIISSSMDAIWQFIEDVAKERAELAYDIDGVVIKVNSLALQEALGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++ +  +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKTAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++ N+R     P   P+ CP C
Sbjct: 351 YI-----------AEKDIRIGDIVVVYKAGDIIPAVLHVVENKR-DQQVPLPIPTVCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           QS ++   +        A RC     C AQ  E+L HF SRDA NI GLG   ++  F +
Sbjct: 399 QSELIHFEDE------VALRCVNPR-CPAQLKEKLIHFASRDAMNIIGLGPAIVEKLFTA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           E     I   ADI+ L             + G  + S T LY +I   +  S E+ +F L
Sbjct: 452 E----LICDVADIYQLTPENLM------QLEGIKEKSATKLYKAIQASKANSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + + S +  A    + IA  +           +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKASRLLMERFESLEQLAAADFDDIAAID----------GLGIVIAESLKTYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  +  L            +    + +    +V TG L  + R +A+E +  LGA 
Sbjct: 552 TAGAQKLLIELKTAGLNLTYLGKKTASDAALTGMTIVLTGKLANLTRSQAKEKLQSLGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V+  +S+KT ++I G + GSKLEKA+ LG++I +E     L
Sbjct: 612 VAGSVSKKTSLVIAGSDAGSKLEKAKTLGIEIKDEAWLESL 652


>gi|222474841|ref|YP_002563256.1| DNA ligase (ligA) [Anaplasma marginale str. Florida]
 gi|255003944|ref|ZP_05278745.1| DNA ligase (ligA) [Anaplasma marginale str. Virginia]
 gi|254781539|sp|B9KHN8|DNLJ_ANAMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222418977|gb|ACM49000.1| DNA ligase (ligA) [Anaplasma marginale str. Florida]
          Length = 673

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 253/709 (35%), Positives = 396/709 (55%), Gaps = 42/709 (5%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQAR+ L+ L  ++ +HD  Y+    P + D +YD L +    +   FPD+ + +D   
Sbjct: 2   LEQARRRLAGLNAKLRHHDMLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDIRQYDD--- 58

Query: 74  PLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
             + +G   ++    KV H  P LSLE  + ++D+ KFITR+ RF + + D+ +  + E 
Sbjct: 59  YADVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCEL 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG   +  Y  GK    A RG+GH GED++     +  +P  L  + PE++EVRGE+Y
Sbjct: 119 KMDGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQL-DSAPEVLEVRGEIY 177

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +   DF  L       G   +ANPRNAA+G +R+LN   +        +           
Sbjct: 178 MHHEDFEKLR------GSCNFANPRNAAAGSIRQLNQKIVEERN--LSYVAYSAVNSTFA 229

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E+L+++   GF  N  V   +     +++YN + + RS L YDIDG+VYKV+  + Q
Sbjct: 230 TQQEILKQLDEWGFHTNKQVLFTDKIEEAIAFYNSVYTTRSALGYDIDGVVYKVNSINFQ 289

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K LG   +SPRW I+HKF   +A T+LLDI +Q+GRTG++TP+A LEP+NIGG +++ A+
Sbjct: 290 KLLGATGKSPRWAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRAS 349

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN + I+            +D+R+GD V+VKRAGEVIP+VVD+    R    Q F FPS
Sbjct: 350 LHNLNEIER-----------KDVRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFPS 398

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S++ R+          A RC   L+C AQ LER+KHFVSRD  NI GLG +Q++
Sbjct: 399 HCPSCGSKLHREPGE------VALRCVAELSCKAQALERVKHFVSRDGLNIMGLGAKQIE 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
           FF         I   ADIF+L+ +        E+  G+G+ SV NL  +I     + L  
Sbjct: 453 FFCNH----GLIGSIADIFSLEEKLHGINLDTEH--GWGEKSVANLIAAIRNSATVRLSN 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR +G   A+ +A++Y SY+N+ Q +  +   ++      +++  +G+    ++
Sbjct: 507 FIFALGIRFIGVGAAKLIAEHYRSYKNWHQAMLALTETHDT-----VQIRGLGEKSISSL 561

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             F+    N+  +E+L  +++           SS I  K +VFTGTL+ + R +A+    
Sbjct: 562 KAFFSVQGNLEVLESLSAKLNILDEASPAQRGSSAISGKTVVFTGTLESMSRTEAKLQAE 621

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LGA V+  +S  T +++ G NPGSK EKA  L V++++E+ ++ +++ 
Sbjct: 622 SLGAKVANSVSANTWLLVAGSNPGSKHEKALSLNVRVIDEQTWVKMVED 670


>gi|188587790|ref|YP_001919828.1| NAD-dependent DNA ligase LigA [Clostridium botulinum E3 str. Alaska
           E43]
 gi|254781291|sp|B2UZ23|DNLJ_CLOBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|188498071|gb|ACD51207.1| DNA ligase, NAD-dependent [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 667

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 202/716 (28%), Positives = 355/716 (49%), Gaps = 56/716 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + +  L + ++ +   YY    P + D +YD        +            P  
Sbjct: 1   MVDKIERIKELVEILNKYSYDYYVLDNPSVSDKDYDKKYDELKLLEKE----TGVVLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ-----KKDDNSIFF 128
           P  +IG  +     K TH     SL+K  ++++++ +  R  +F        +D   + +
Sbjct: 57  PTLRIGDIVLDGFNKYTHKGKLWSLDKAQSLDEIKDWHNRNIKFVNDMRAQGEDLPDLKY 116

Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
               K DG  + + Y E+G    +A RG+G  GE+V+A ++ I +IP  L  N  ++ EV
Sbjct: 117 IATKKFDGLTVNLTYNEEGMLEVSATRGNGEIGENVTAQVKTIKSIPLKLQENH-DLFEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT 246
            GE  +++  F   N         P  N RN A+G LR LN  +   R L+ F + +G  
Sbjct: 176 HGEAIMTQEAFEKYNSSA----DSPLKNLRNGAAGALRNLNVKETARRDLSAFFYDVGYK 231

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K   EM+  ++  G PV++ ++   +   I +  + ++ IR  L YDIDGLV  +
Sbjct: 232 EGYQFKTYLEMMDFIKEKGLPVDDYLKVCVSIEDIKNEIDYIEKIRFDLNYDIDGLVIAI 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   ++ LG   + P+W I++KF  ++A+T+L+D++  +GR+G + P A LEPV + G 
Sbjct: 292 DDIRTRELLGYTVKFPKWAIAYKFEAQEATTKLVDVEWNVGRSGRIGPTAILEPVELAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATL+N D IK            + +R+G  V ++R+ +VIP+++  + N    +++
Sbjct: 352 TVKRATLNNMDDIKR-----------KGVRIGADVFIRRSNDVIPEIMGTLENT-LENSE 399

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P+ CP C S VV +         A + C   L+C  Q ++ + H+ SRDA NI G 
Sbjct: 400 EIFPPTECPACGSHVVLN--------GAHYFCENTLSCKPQLVKTIVHYASRDAMNIAGF 451

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            ++  +  F+      +I+  +D++ L++    +      +  FGD    NL +++   +
Sbjct: 452 SEKTAEQLFEK----LNIKSISDLYKLKKEDLIN------LEKFGDKKAENLLNAVEGSK 501

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L  FI++LGI +VG + A+ +   + S                  +  L+ V  VGD
Sbjct: 502 ECKLYSFIYALGIPNVGVKTAKDIVNKFKSIDGLKNAT----------FEELVSVQDVGD 551

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I+AQ I+EF++  + I  ++ LL      I    K V S  ++K +V TGTLQ   R + 
Sbjct: 552 IVAQDIIEFFKEEKVISTIDELLSLGVNPIFDEVKIVESIFKDKTVVATGTLQNYSRTEI 611

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +  +  LGA VS  +S+KTD +I G++ GSKL KA++LGV++++EE+F  +L + +
Sbjct: 612 KTKLESLGAKVSGSVSKKTDYVIAGESAGSKLTKAEELGVEVISEEEFEKMLGRES 667


>gi|88607345|ref|YP_504763.1| DNA ligase, NAD-dependent [Anaplasma phagocytophilum HZ]
 gi|123736456|sp|Q2GLI8|DNLJ_ANAPZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|88598408|gb|ABD43878.1| DNA ligase, NAD-dependent [Anaplasma phagocytophilum HZ]
          Length = 677

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 260/711 (36%), Positives = 399/711 (56%), Gaps = 43/711 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S   +R+ L+ L  ++  HD  Y+++  P I D++YDAL +    +   FP+L+   D 
Sbjct: 1   MSDNDSRRRLADLNAQLKLHDVLYHEHDAPEISDAQYDALVQEKRELLEKFPELSAYNDY 60

Query: 72  NGPLNKIGG-EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            G    IG   ++  L K+ H  P LSLE  + I+D+ KFI+R+ R      + SI    
Sbjct: 61  EGV---IGALTVDARLPKIAHREPMLSLENSFTIQDVEKFISRVKRSLNMDPEVSITIAC 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           EPKIDG      YEKG  +  A RG+GH GED++   + I  +P  ++   PE++EVRGE
Sbjct: 118 EPKIDGLSFAALYEKGSLIRVATRGNGHLGEDITNTAKVIRKLPHKIANA-PEVLEVRGE 176

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +Y+  +DF  L D         +ANPRNAA+G +R+LNP           +         
Sbjct: 177 IYMHHSDFEKLKDV------CNFANPRNAAAGSIRQLNPKIAEERN--LRYVAYCIVNSA 228

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q  +L+++   GF  +  V  A+     +S++  M + RSTL YDIDG+VYKV++  
Sbjct: 229 LASQEAILKQLAEWGFCTHTEVLFADNMDDALSFHTRMYNTRSTLGYDIDGIVYKVNDTH 288

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQK LG  ++ PRW  +HKF   +A T+L DI +Q+GRTG++TP+A LEP+NIGG L++ 
Sbjct: 289 LQKLLGSTSKYPRWATAHKFPSTEAITKLRDISVQVGRTGVITPIAELEPINIGGTLVSR 348

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP--F 428
           A+LHN + I             +DIR+GD V+VKRAGEVIP+VV +    R   A P  +
Sbjct: 349 ASLHNLNEIAR-----------KDIRIGDSVIVKRAGEVIPQVVGVDHTARCNSAVPEEY 397

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FPS CP C S + R           A RCT  L+C AQ LER+KHFVSRD  NI GLG+
Sbjct: 398 VFPSHCPSCGSTLSRAPGE------VAMRCTAELSCQAQVLERVKHFVSRDGLNIVGLGE 451

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           +Q++FF      A  I   ADIF+L+ +        E+  G+G+ S+  L ++IN    +
Sbjct: 452 KQIEFFCN----ASYISNVADIFSLREKISHMNLSAEH--GWGEKSIALLINAINASTTV 505

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L  FIF+LGIR +G   A+ +A++Y SY  + + + ++    + D      +  +G   
Sbjct: 506 KLSNFIFALGIRFIGKGAAKLIAEHYRSYSAWVRAMTSLANGEDPD-----NIHGIGLKS 560

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            +++  F+ +  N+  ++ L ++++          +S I  K +VFTG L+ + R++A +
Sbjct: 561 IESLRAFFSSEDNLRVLQTLEEKLNILNEIANTETASPISGKTIVFTGVLEDMSRNEAAK 620

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           Y   LGA V   ++ KTDI++ G N GSKL+ A++LG+++MNE ++  LL+
Sbjct: 621 YAETLGAKVGNTVTTKTDILVAGSNSGSKLDTARKLGIQVMNESEWKDLLK 671


>gi|242309547|ref|ZP_04808702.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter pullorum
           MIT 98-5489]
 gi|239524118|gb|EEQ63984.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter pullorum
           MIT 98-5489]
          Length = 648

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 226/702 (32%), Positives = 362/702 (51%), Gaps = 59/702 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +     + ++     YY    PI  D EYD L  +        P+       + P  ++G
Sbjct: 5   QYLQAIKTLNLWAKHYYILDDPIASDEEYDTLYHQIKEFEAKNPNQIAK---DSPTQRVG 61

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
             +  S  K  H     SLE I++ ++L+++I R+ +        ++ FT++PK DG  +
Sbjct: 62  DNILESFSKSEHIERMWSLEDIFDTQELQEWINRVSK------GENLLFTIDPKFDGASL 115

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + YE GK   A  RGDG  GE+V+   + I +IP  LS+   + IE+RGE  I+KNDF 
Sbjct: 116 NLLYENGKLQKATTRGDGFIGENVTQNAKTIQSIP--LSIPYTDRIEIRGECVIAKNDFE 173

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN E +  G   +ANPRNAA+G LR+L+      R L F   G+G  +       +E++
Sbjct: 174 RLNQERLENGESLFANPRNAAAGSLRQLDSKITAKRKLQFIPWGVGFCTIEENSF-FELM 232

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           QK+R  GF  +   +       I   Y  + S R + P  +DG+V ++D  +LQK LG  
Sbjct: 233 QKIRSFGFLTSPFSKLCKNLQEIEESYQNLISKRDSYPIMLDGMVIRIDSIALQKNLGFT 292

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            ++PR+  ++KF   +   ++LDI +Q+GRTG++TPVA LEPV I GA +  ATLHN D 
Sbjct: 293 IKAPRFACAYKFPAIEKKAKILDITLQVGRTGVVTPVAILEPVMIEGAKVARATLHNFDE 352

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I+            +DI + D V++ R+G+VIPK++  + + R    +    P+ CPIC 
Sbjct: 353 IRK-----------KDILINDSVILIRSGDVIPKIIKSLPSLRDGTQKKCEIPTHCPICG 401

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++ +                 L+C A+    L HF+S+ A NI+GLGK+ +D  F+  
Sbjct: 402 SELLIEEKLIK---------CQNLSCKARLKNSLIHFISKKALNIDGLGKRIIDLLFER- 451

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I    DIF+LQ          E + GF D  + N+ ++I + + I L RFI +LG
Sbjct: 452 ---GKITKIEDIFSLQYEDL------EGLEGFKDKKIHNILNAIKESKGIDLWRFINALG 502

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I H+G   ++ LA  +             +      +   I +   G+ +A ++VEF   
Sbjct: 503 IEHIGEGASKKLANTFG------------LEFCQKGFEDFITLDGFGEEMANSLVEFCHI 550

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
             N   ++ LL  ++P   +  ++ ++ +  K  V TGTL + +R   QE +  LGA VS
Sbjct: 551 --NQERIKNLLNILTPKTTQTPQSTTN-LSGKTFVITGTLSQ-KRESYQEILESLGAKVS 606

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + +S+KTD ++ G+  GSKL KAQ+LGVKI++E+ F  L+++
Sbjct: 607 SSVSKKTDFLLCGEEAGSKLTKAQELGVKILDEKDFWELIKE 648


>gi|50364975|ref|YP_053400.1| DNA ligase, polydeoxyribonucleotide synthase NAD+ [Mesoplasma
           florum L1]
 gi|81391966|sp|Q6F1V7|DNLJ_MESFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|50363531|gb|AAT75516.1| DNA ligase, polydeoxyribonucleotide synthase NAD+ [Mesoplasma
           florum L1]
          Length = 666

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 219/709 (30%), Positives = 365/709 (51%), Gaps = 46/709 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ EQA K ++ L  +++     YY    P + D+EYD    +   + + FP+L  S   
Sbjct: 1   MTKEQASKLINDLRLKLNEWAKEYYVLDNPSVDDAEYDKTIHQLLDLENQFPELITS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +    K+GG ++    K TH  P LSL  I++ ++   F  ++ +    +++    +T E
Sbjct: 58  DSITQKVGGIVSDKFEKHTHKYPMLSLGDIFSWDEFINFNKQVAKVTGTENN---EYTAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ Y+ G       RGDG  GE+V+  ++ I +IP  LS+   + IE+RGEV
Sbjct: 115 LKIDGLSISLIYKDGVLQKGVTRGDGKVGENVTTNVKTIKSIP--LSIPSKDEIEIRGEV 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           ++ K +F  +N+E +  G + +ANPRNAA+G LR+L+   +                   
Sbjct: 173 FLGKKEFAKINEERLLNGDQLFANPRNAAAGTLRQLDSKIVAERNLDAYLYYYFNENNPI 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q++ + +++ LG  +N   +   T   +  Y       R+ L Y+IDG+V+K+++  L
Sbjct: 233 NTQFDSINQIKNLGLKINKETKICKTLEEVKLYIEYYTEKRNELDYEIDGIVFKLNDKKL 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+++G  A++P+W I++KF  +   T+LLDI   +GRTG +T  A+LEPV I G  ++ A
Sbjct: 293 QEEVGYTAKTPKWAIAYKFPAEVKQTKLLDIFPTVGRTGKITYNAKLEPVQIAGTTVSAA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +L+N +YI             +D+R+   V VK+AG++IP+V+  I +E+      +   
Sbjct: 353 SLNNAEYIM-----------AKDLRINSIVKVKKAGDIIPEVISAIKDEKFDLLPIWEKD 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C   +               +      C AQ L  L+HF SR A NI GLG Q +
Sbjct: 402 VQCPACNELL-------EKTSTEVDQFCVNFNCPAQILRSLEHFASRGAANIVGLGGQTI 454

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
              F+ +     I   ADIF ++  ++     I N   FG+ S  NL  SI + +N S E
Sbjct: 455 KKLFEEK----LITNIADIFKVEEHKEN----IINFEKFGEKSFENLIASIKESKNNSFE 506

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +F LGIRHVG++ A +LA+ Y +  N               +  L  +  VG+++A +
Sbjct: 507 KTLFGLGIRHVGSKTALTLAQIYKNIDNLKNAT----------YEELSSIDSVGEVLAMS 556

Query: 612 IVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           IV++++   N+  +  L   +V+       KN  S I  K  V TGTL +  R   ++ +
Sbjct: 557 IVDWFKIESNLQLINELKSFDVNFEYLGQAKNTESTISEKSFVITGTLSE-SRDYFKDII 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
                 V   +S+KTD ++ G+N GSKL KA++L VK++NEE+F  +L+
Sbjct: 616 ELNNGKVIGSVSKKTDYVLAGENAGSKLTKAEELNVKVINEEEFFAILK 664


>gi|257467825|ref|ZP_05631921.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185]
          Length = 688

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 225/731 (30%), Positives = 361/731 (49%), Gaps = 50/731 (6%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           MK+ +L   E   +++ ++ +  L  ++  ++  YY  ++ +I D EYD L      +  
Sbjct: 1   MKEMKLNFFEENDMKKDKERIEKLRADLLKYNQYYYTNNESLISDVEYDMLMNELKELEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
            +P+         P   +G          KVTH  P LSL   +N E++  FI RI R  
Sbjct: 61  KYPEYK---SEASPTVIVGASNLRENKFQKVTHKKPMLSLSNTYNEEEIGDFIDRIKRLL 117

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
            +++D  I + LE K+DG  I+I+YEKGK V    RGDG  GEDV+  I  I TIP  L 
Sbjct: 118 PERED--IKYALELKLDGLSISIQYEKGKLVRGVTRGDGAIGEDVTENIMEIETIPHTLK 175

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LN 237
             +   +E+RGE+ +  + F +LN+  +  G + +ANPRNAASG LR+++ + I    L+
Sbjct: 176 EPL--DMEIRGEIVLPISRFESLNERRMEAGEEVFANPRNAASGTLRQIDASIIKERGLD 233

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
            + + +        +   E ++ +  LG          +T   +    +  +  +  L Y
Sbjct: 234 CYFYFIVDAKNYGIQTHSESIKYLESLGIKTTGVCEVLDTASALKKRIDYWEQEKEKLDY 293

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           + DG+V KVD   L  +LG   +SPRW I++KF  KQ +T LL I  Q+GRTG +TPVA 
Sbjct: 294 ETDGMVIKVDNLDLWDELGNTTKSPRWAIAYKFPAKQVTTTLLGITWQVGRTGKVTPVAE 353

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LE V + G+ +  A+LHN   I+            +DIR+GD+V +++A E+IP+VV  I
Sbjct: 354 LEEVALSGSKVKRASLHNFHEIER-----------KDIRIGDKVFIEKAAEIIPQVVKSI 402

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
              R    +  + P  CP+C S V R+      K            C  +   R+++FVS
Sbjct: 403 KEFRDGSEKMITEPDKCPVCGSPVAREEGQVDIK-------CTNPVCPGKVKGRIEYFVS 455

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           RDA NI G G + ++   +       I+   DI+ L+  ++     +ENI   G  SV N
Sbjct: 456 RDAMNIGGFGSKMVEKMLE----LSFIKNVGDIYDLKDHKE----DLENIEKMGKRSVEN 507

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L DSI   +     + I++LGI  +G    + LA+   +  N  +           +   
Sbjct: 508 LLDSIEASKKRDYSKVIYALGIPFIGKYSGKLLAEASRNIDNLMK----------MEIEE 557

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVF 654
           LI +  +GD  A+A+ +F ++  NI  +  L              E         K  +F
Sbjct: 558 LIEIDGIGDKGAKAVYDFLRDEENIELINILKGHGLQFAMEEKEEEDQSEKIFSGKTFLF 617

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQ 713
           TGTL+  +R + +E + +LG    + +S+  D +I+G+  GSKL+KAQ+LG VKI+ EE+
Sbjct: 618 TGTLKNFKREEIKEEIEKLGGKNLSAVSKNLDYLIIGEKAGSKLKKAQELGTVKILTEEE 677

Query: 714 FLFLLQQYNTT 724
           F+ + +  N  
Sbjct: 678 FVEICKNNNKN 688


>gi|150015242|ref|YP_001307496.1| NAD-dependent DNA ligase LigA [Clostridium beijerinckii NCIMB 8052]
 gi|190359245|sp|A6LQB0|DNLJ_CLOB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149901707|gb|ABR32540.1| DNA ligase, NAD-dependent [Clostridium beijerinckii NCIMB 8052]
          Length = 663

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 196/714 (27%), Positives = 356/714 (49%), Gaps = 58/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++  + +  L ++++ +   YY    P + D +YD        +            P  
Sbjct: 1   MDKI-ERIKELVEKLNRYSYEYYSLDSPSVSDKDYDEKYYELQELERE----TEYVLPYS 55

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-----KDDNSIFF 128
           P  ++G  +     K TH     SL+K  +++++  +  R  +F ++     ++   + +
Sbjct: 56  PTLRVGDVVLEGFRKYTHKARLWSLDKAQSLQEIIDWHNRNVKFVEEARGRGENLPDLKY 115

Query: 129 TLEPKIDGTMITIRYE-KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
            +  K DG  I + Y  +G    AA RG G  GE+V+A ++ I +IP  L +N  +I+EV
Sbjct: 116 VVTKKFDGLTINLTYNTEGILEIAATRGTGSIGEEVTAQVKTIKSIP--LKINSNDILEV 173

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT 246
            GE  +++  F   N+        P  N RN A+G LR LN  +   R L+ F + +G  
Sbjct: 174 HGEAIMTQEAFNKYNET----SDTPLKNLRNGAAGALRNLNVKETARRNLSAFFYDVGYK 229

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K   EM++ ++  G PV++ +R   +   I    + ++ IR  L YDIDGLV  +
Sbjct: 230 EGTPFKTYMEMMEFIKQQGLPVDDYIRVCTSIEEIEKEIDYVRDIRFDLNYDIDGLVIAI 289

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   ++ +G   + P+W I+ KF  ++A+T+LLD++  +GR+G + P A LEPV + G 
Sbjct: 290 DDIRTRELIGYTVKFPKWAIAFKFEAQEATTKLLDVEWNVGRSGRVGPTAILEPVELAGV 349

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATL+N D I             + +R+G  V V+R+ +VIP+++ I+       ++
Sbjct: 350 TVKRATLNNMDDIAR-----------KGVRIGAEVFVRRSNDVIPEIMGIVPES-LEGSE 397

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
             S P  CP C S +V +         A + C   L+C  Q ++ + H+ SR+A NI G 
Sbjct: 398 EISVPEVCPACGSHLVLN--------GAHYFCENTLSCKPQLVKTIVHYASREAMNIAGF 449

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            ++  +  F+      +I+  +D++ L+            +  F      NL ++I K +
Sbjct: 450 SERTAEQLFEK----LNIKSISDLYKLKEEDLIG------LEKFAAKKAQNLLEAIEKSK 499

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +  L  FI++LGI +VG + A+ L   + S +                +  L+ V  VGD
Sbjct: 500 DCELYAFIYALGIPNVGVKTAKDLVSRFESIEGLKNAT----------FEELVGVQDVGD 549

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I+AQ ++ F++  + +  +E LL          ++ ++S  E K +V TG+L+   R + 
Sbjct: 550 IVAQGVLAFFKEEKVLQTIEELLSLGVSPKYEEKEVIASAFEGKTVVATGSLKNYSRTEI 609

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ +  LGA V+  +S+KTD +I G+  GSKL KA++LG+KI++E++F  +L++
Sbjct: 610 KDKLESLGAKVAGSVSKKTDYVIAGEAAGSKLTKAEELGIKILSEDEFEEMLRR 663


>gi|3800758|gb|AAC68862.1| thermostable DNA ligase [Thermus filiformis]
          Length = 667

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 236/720 (32%), Positives = 376/720 (52%), Gaps = 59/720 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+AR+ ++ L   I YH+  YY  + P I D+EYD L R    +   FP+      P
Sbjct: 1   MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFK---SP 57

Query: 72  NGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G      +   V H     SL+  +  E++  F  R+ R      +    +T+
Sbjct: 58  DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLERL----AEAPSLYTV 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G +   +  GDG  GE+V+  +  IPTIPR L    P+ +EVRGE
Sbjct: 114 EHKVDGLSV-LYYEEGVWSTGS--GDGEVGEEVTQNLLTIPTIPRRLKGV-PDRLEVRGE 169

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTS 247
           VY+    FL LN+E+   G K + NPRNAA+G LR+ +P    +      F+  GLG   
Sbjct: 170 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLGL 229

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           E    K QYE+L  ++  GFPV +   +A    G+   Y    + R  LP++ DG+V K+
Sbjct: 230 EESGLKSQYELLLWLKEKGFPVEHCYEKALGAEGVEEVYRRGLAQRHALPFEADGVVLKL 289

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +L  +LG  AR+PR+ +++KF  ++  TRLLD+  Q+GRTG +TPV  LEPV I G+
Sbjct: 290 DDLTLWGELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGS 349

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++   R    +
Sbjct: 350 EVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGKER 398

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  +P  CP C  R+V++           HRC   L C A++ E ++H+ SR A +IEGL
Sbjct: 399 PIRWPEACPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIEGL 449

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ ++   +       +R  AD++ L++           +   G+ S  NL   I + +
Sbjct: 450 GEKLIERLLEK----GLVRDVADLYHLRKEDLLG------LERMGEKSAQNLLRQIEESK 499

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +  LER +++LG+  VG  +AR+LA+ + +     +     +    +             
Sbjct: 500 HRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELIEVEEVGE---------- 549

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           + A+AI+E  ++P     V  L +       + E  VS  +     V TG L +  R + 
Sbjct: 550 LTARAILETLKDPAFRDLVRRLKEAGVSMESKEE--VSDLLSGLTFVLTGELSR-PREEV 606

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           +  + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV ++ EE+F   L++    + 
Sbjct: 607 KALLQRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKEKGAPVP 666


>gi|15618073|ref|NP_224357.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae CWL029]
 gi|15835684|ref|NP_300208.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae J138]
 gi|16752895|ref|NP_445166.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae AR39]
 gi|33241485|ref|NP_876426.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae TW-183]
 gi|7674003|sp|Q9Z934|DNLJ_CHLPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|4376415|gb|AAD18302.1| DNA Ligase [Chlamydophila pneumoniae CWL029]
 gi|7189537|gb|AAF38439.1| DNA ligase [Chlamydophila pneumoniae AR39]
 gi|8978522|dbj|BAA98359.1| DNA ligase [Chlamydophila pneumoniae J138]
 gi|33235993|gb|AAP98083.1| DNA ligase (NAD+) [Chlamydophila pneumoniae TW-183]
          Length = 662

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 225/708 (31%), Positives = 374/708 (52%), Gaps = 50/708 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E ++    +L +E+  HD  YY   +P I D EYD   R+   I  + P+       
Sbjct: 1   MKEENSQAHYLALCRELEDHDYSYYVLHRPRISDYEYDMKLRKLLEIERSHPEWKVLW-- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++G   + +   V+H  P LS+   ++ E+L +F +R+ +           +T+E
Sbjct: 59  -SPSTRLGDRPSGTFSVVSHKEPMLSIANSYSKEELSEFFSRVEKSLGTSP----RYTVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + IRYE    V A  RG+G  GED+++ IR I ++P  L  + PE IEVRGEV
Sbjct: 114 LKIDGIAVAIRYEDRVLVQALSRGNGKQGEDITSNIRTIRSLPLRLPEDAPEFIEVRGEV 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           + S + F  +N++   + +  +ANPRNAA G L+ L+P +   R L   ++ L    +  
Sbjct: 174 FFSYSTFQIINEKQQQLEKTIFANPRNAAGGTLKLLSPQEVAKRKLEISIYNLIAPGDND 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           +   YE LQ+    GFPV+   R  +T   ++S    +++ R++LP +IDG V KVD  +
Sbjct: 234 S--HYENLQRCLEWGFPVSGKPRLCSTPEEVISVLKTIETERASLPMEIDGAVIKVDSLA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG   +  RW +++K+A ++A T L DI +Q+GRTG+LTPVA+L PV + G+L++ 
Sbjct: 292 SQRVLGATGKHYRWALAYKYAPEEAETLLEDILVQVGRTGVLTPVAKLTPVLLSGSLVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+L+NED I             +DIR+GD V V + GEVIPKVV +   +R   ++ ++ 
Sbjct: 352 ASLYNEDEIHR-----------KDIRIGDTVCVAKGGEVIPKVVRVCREKRPEGSEVWNM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P FCP+C S VVR+ +  + +            C A  +E+++ FV R A NI+ LG + 
Sbjct: 401 PEFCPVCHSHVVREEDRVSVR-------CVNPECVAGAIEKIRFFVGRGALNIDHLGVKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       +   AD+F L             I G  + S  N+ +SI + +++ L
Sbjct: 454 ITKLFE----LGLVHTCADLFQLTTEDLM------QIPGIRERSARNILESIEQAKHVDL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +RF+ +LGI  +G  +A  LA ++ +                  +  L+ +  +G+ +A 
Sbjct: 504 DRFLVALGIPLIGIGVATVLAGHFETLDRVISAT----------FEELLSLEGIGEKVAH 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           AI E++ +  ++  ++ +          H     S    K  V TGTL+ + R  A+  +
Sbjct: 554 AIAEYFSDSTHLNEIKKMQDLGVCISPYH--KSGSTCFGKAFVITGTLEGMSRLDAETAI 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              G  V + +S++TD +++G+NPGSKLEKA++LGV I+++E F  L+
Sbjct: 612 RNCGGKVGSSVSKQTDYVVMGNNPGSKLEKARKLGVSILDQEAFTNLI 659


>gi|269959115|ref|YP_003328904.1| NAD-dependent DNA ligase [Anaplasma centrale str. Israel]
 gi|269848946|gb|ACZ49590.1| NAD-dependent DNA ligase [Anaplasma centrale str. Israel]
          Length = 673

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 254/709 (35%), Positives = 396/709 (55%), Gaps = 42/709 (5%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQAR+ L+ L  ++ +HD  Y+    P + D +YD L +    +   FPD+ + +D   
Sbjct: 2   LEQARRRLAGLNAKLRHHDVLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDIRQYDD--- 58

Query: 74  PLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
             + +G   ++    KV H  P LSLE  + ++D+ KFITR+ RF + + D+ +  + E 
Sbjct: 59  YADVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCEL 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG   +  Y  GK    A RG+GH GED++     +  +P  L  + PE++EVRGE+Y
Sbjct: 119 KMDGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQL-DSAPEVLEVRGEIY 177

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +   DF  L       G   +ANPRNAA+G +R+LN   +        +           
Sbjct: 178 MHHEDFEKLR------GSCNFANPRNAAAGSIRQLNQKIVEERN--LSYVAYSAVNSTFA 229

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E+L+++   GF  N  V   +     V++YN + + RS L YDIDG+VYKV+  + Q
Sbjct: 230 TQQEILKQLDEWGFHTNKQVLFTDKIEEAVAFYNSVYTTRSALGYDIDGVVYKVNSINFQ 289

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K LG   +SPRW I+HKF   +A T+LLDI +Q+GRTG++TP+A LEP+NIGG +++ A+
Sbjct: 290 KLLGATGKSPRWAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRAS 349

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN + I+            +D+R+GD V+VKRAGEVIP+VVD+    R    Q F FPS
Sbjct: 350 LHNLNEIER-----------KDVRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFPS 398

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S++ R+          A RC   L+C AQ LER+KHFVSRD  NI GLG +Q++
Sbjct: 399 HCPSCGSKLHREPGE------VALRCVAELSCKAQALERVKHFVSRDGLNIMGLGAKQIE 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
           FF         I   ADIF+L+ +        E+  G+G+ SV NL  +I     + L  
Sbjct: 453 FFSNH----GLINGIADIFSLEEKLHGINLGTEH--GWGEKSVANLIAAIRNSATVRLSN 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR +G   A+ +A++Y SY+N+ Q +  +   ++      +++  +G+    ++
Sbjct: 507 FIFALGIRFIGVGAAKLVAEHYRSYKNWHQAMLALTETHDT-----VQIRGLGEKSISSL 561

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             F+    N+  +E+L  +++           SS I  K +VFTGTL+ + R +A+    
Sbjct: 562 KAFFSVQGNLEVLESLSAKLNILDEASPAQRGSSAISGKTVVFTGTLESMSRTEAKLQAE 621

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LGA V+  +S  T +++ G NPGSK EKA  L V++++E+ ++ +++ 
Sbjct: 622 SLGAKVANSVSANTWLLVAGSNPGSKHEKALSLNVRVIDEQTWVKMVED 670


>gi|257053690|ref|YP_003131523.1| NAD-dependent DNA ligase LigA [Halorhabdus utahensis DSM 12940]
 gi|256692453|gb|ACV12790.1| DNA ligase, NAD-dependent [Halorhabdus utahensis DSM 12940]
          Length = 693

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 232/717 (32%), Positives = 360/717 (50%), Gaps = 51/717 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
              ++AL  E A ++   L + I YHD  YY  + P+I D  YDAL  R   +   F   
Sbjct: 19  FESVDALDAESAHEQAEQLREAIRYHDHQYYVENDPVIGDRTYDALFARLQDLEDGF--- 75

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              +  N P  ++GGE    L  V H  P  S+++   + ++R+F  R+ R       + 
Sbjct: 76  -GLDRENSPTQRVGGEPLDKLASVEHVAPMQSIDQGGEVTEVREFDERVARGMGDAGFDP 134

Query: 126 IF--FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
               +  EPK DG  + I YE G +  AA RGDG  GEDV+  +R IP++P  L  + P+
Sbjct: 135 DERTYFCEPKFDGLSVEIVYEDGVYQRAATRGDGEVGEDVTENVRTIPSVPGRLRGDYPD 194

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243
            + VRGEVYI  + F A N E I  G  P+ANPRNAA+G LR+L+P+             
Sbjct: 195 TLAVRGEVYIPTDAFQAYNRERIERGDDPFANPRNAAAGTLRQLDPSITAERPLAIFFFG 254

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
              + +  +   E+ +++   G  V +   + ++    + Y + +   R  LP++IDG+V
Sbjct: 255 VLDASVEFEQNSEVYERLPEWGLRVTDLAEEVDSIEDAIDYRDRLLDERDDLPFEIDGVV 314

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+++ +    LG  AR+PRW  ++KF  +   T + D+ +Q+GRTG LTPVA ++PV +
Sbjct: 315 IKLNDRAACDALGSTARAPRWAFAYKFPARTERTTIRDVVVQVGRTGRLTPVALMDPVEV 374

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG +++ A+LHN   I+ L            + VGD V V+RAG+VIP+V +++      
Sbjct: 375 GGVMVSRASLHNPAEIERL-----------GVDVGDEVRVQRAGDVIPEVAEVLDAASDG 423

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
               F FP  CP+C S V         +      CTGGLAC AQ    + H+ SR   +I
Sbjct: 424 ---TFDFPESCPVCDSPV--------ERDGPLAFCTGGLACPAQLERAIVHYASRAGLDI 472

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG++++         A  +   AD++ L +   TS      + G+G  SV NL + + 
Sbjct: 473 EGLGEERVQQLLD----AGLVEELADLYELGQLDLTS------LEGWGMQSVANLQEELE 522

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             R   L+ F+ +L +  +GA  A +LA+ + +++               D   L  V  
Sbjct: 523 ASREPPLDDFLAALNVPSLGAATATALAREFGTFEAVMDA----------DREQLQAVDD 572

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +G  +A  I EF++  RN  A+E LL  V P     E     E++    VFTGTL    R
Sbjct: 573 IGPKVAAEIREFFETERNREAIERLLDHVDPQPYEVE--GGDELDGLTFVFTGTLSNYTR 630

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            +AQE V   G   ++ +S  TD ++VG+NPG  K + A    V+I++E++F  LL 
Sbjct: 631 SEAQELVEVHGGSATSSVSGNTDYLVVGENPGQRKRDDADANDVQILDEDEFEELLA 687


>gi|254371060|ref|ZP_04987062.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|151569300|gb|EDN34954.1| hypothetical protein FTBG_00816 [Francisella tularensis subsp.
           tularensis FSC033]
          Length = 643

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 251/690 (36%), Positives = 383/690 (55%), Gaps = 54/690 (7%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           Y+   KPII DS+YD L R    + +  P        N  L+++GGE+      + H   
Sbjct: 2   YHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPI---NSVLDRVGGEVLAGFETIKHKKK 58

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
             SL  ++++E+LR F  +I           I    EPK+DG  I+I Y+ GKF YA  R
Sbjct: 59  MTSLANVFSLEELRDFYDKIE--------YDIELECEPKMDGLAISIFYKNGKFDYAVTR 110

Query: 155 GDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           GDG  GE VS  ++ I  +P    + N PE +EVRGE+ + K  FL+LN+ M     K +
Sbjct: 111 GDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTF 170

Query: 214 ANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT--SEIFAKGQYEMLQKMRCLGFPVNN 270
           ANPRNAA+G +R L+      R L  + +G+G      ++ + Q+E++Q ++  GF +++
Sbjct: 171 ANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKDFVYPETQFELMQLLQSFGFTISD 230

Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
            +  A  F  +  Y+++M   R+ L YDIDGLV+KV+   LQ  +G  AR P+W I++KF
Sbjct: 231 NMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVNNIKLQDTIGYTARGPKWAIAYKF 290

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
             ++  + +L+++ Q+GRTG +TPVARL+PV +GG +++NATLHN + IK          
Sbjct: 291 PAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVIVSNATLHNINEIKR--------- 341

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450
             +DIRVGDRV+V+RAG+VIP+VV  +   R  DAQ    P+ CP+C S++      +  
Sbjct: 342 --KDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQMVEMPTNCPVCDSKI------ENV 393

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
              A +RCTGG  C AQ  ERLKHFVSR A +I+ LG + ++        A  I+ PADI
Sbjct: 394 NDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLGAKLIEQLV----AANLIKYPADI 449

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
           + L   Q T       +      S  N+ DSI K +  SL RFIF++GI+ +G   + +L
Sbjct: 450 YKLNFEQLTG------LERMAAKSSQNVLDSITKSKEPSLARFIFAIGIKDIGEVSSDAL 503

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
           A ++ S ++F              +  LI +  +G+I+A  IV F+ +  NI  VE  L 
Sbjct: 504 ANHFGSLESFRDA----------KFEELIEINDIGEIMANNIVSFWHDSLNIKIVEEFLA 553

Query: 631 EVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
                 +  + E   +     K +V TG+ +   R +  + +  +GA V++ +S+KTD++
Sbjct: 554 IGIKIQNPVKVEHAYNESFTGKTVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMV 613

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           I GDN GSKL KAQ+LGV+++ E+    LL
Sbjct: 614 ICGDNAGSKLTKAQELGVEVILEDNLKDLL 643


>gi|313886637|ref|ZP_07820349.1| DNA ligase (NAD+) [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923933|gb|EFR34730.1| DNA ligase (NAD+) [Porphyromonas asaccharolytica PR426713P-I]
          Length = 679

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 210/722 (29%), Positives = 349/722 (48%), Gaps = 58/722 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++      E+  L   I  H+  YY  + P I D++YDAL +R   +    P+LA   DP
Sbjct: 1   MTRNNTELEIEQLRTTIEQHNRAYYLDNAPTISDADYDALMQRLLTLEAEHPELA---DP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++G + N +  +V H  P LSL   +N +++ +   R          + + +  E
Sbjct: 58  TSPSLRVGRDRNDAFVQVAHERPMLSLSNTYNYDEIAEICERTDTLL---ATDDVPWVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV------LSLNIPEII 185
            K DG+ I++ YE+G  V A  RGDG  G+DV+  +R I ++P                I
Sbjct: 115 MKYDGSSISLIYEEGVLVRAVTRGDGTLGDDVTVNVRTIQSVPLRLRPVAGHPDYTMGRI 174

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEV +   +F  LN E  A G  P+ANPRNAA+G L+ LN      R L    + L 
Sbjct: 175 EVRGEVLLPFKEFERLNGERTAEGEAPFANPRNAAAGTLKTLNSRVVAQRRLLCICYYLY 234

Query: 245 KTSEIF--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
              +        YE ++ +  +GF       +++    +  Y +E    R  LPY  DG+
Sbjct: 235 ALDDEARLPDSYYERMKLLEEMGFNTGVAPFKSSDLSALYHYIDEWDVQRGDLPYATDGI 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVD  + Q+ LG  A+SPRW  ++K+  + A   LL +D Q+GR+G++TPVA +EPV 
Sbjct: 295 VLKVDSLTQQRTLGNTAKSPRWAFAYKYQPENARAELLSVDYQVGRSGVVTPVANVEPVL 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           I G ++  ATLHNE++IK L           D+   D V +++ GE+IPK+  +  + R 
Sbjct: 355 ISGTVVRRATLHNEEFIKSL-----------DLHYHDYVYIEKGGEIIPKITAVETSLRR 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P+++P   P  CP C + + +            + C    AC  Q + R++H+ +R A +
Sbjct: 404 PESEPVRLPERCPACGAPLQQIDG------SVGYYCVNSYACPPQIMGRIEHYCTRRAAD 457

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I    +     F +       I    D++ L          +  +  F + S+ NL  SI
Sbjct: 458 INVGPETIDALFDR-----HLIENIDDLYKLTASD------LAQLPNFKEKSINNLLASI 506

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + ++    R ++ +GIR+VG   A++LA+++ S    AQ  +            L  +P
Sbjct: 507 EQSKSRPFARLLYGIGIRYVGEGTAKTLARHFQSIDRLAQATD----------YELQALP 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTL 658
            VG  IA+ +V F+   RN   +  L +       + E+   +     +E +++V +G+ 
Sbjct: 557 DVGPKIAEQVVYFFSLERNQQLIAELQRCGVILEEQTEETTDAPQSNLLEGERIVISGSF 616

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
            +  R + ++ + Q G V    +S +T  +++G + G SK  KA+QLG+ ++ EE+FL  
Sbjct: 617 TQHSRDEYKQLIEQHGGVNVGSISGRTTFVLMGSDMGPSKRAKAEQLGIPLVTEEEFLAR 676

Query: 718 LQ 719
           L 
Sbjct: 677 LN 678


>gi|251777669|ref|ZP_04820589.1| DNA ligase, NAD-dependent [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243081984|gb|EES47874.1| DNA ligase, NAD-dependent [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 667

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 202/716 (28%), Positives = 355/716 (49%), Gaps = 56/716 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + +  L + ++ +   YY    P + D +YD        +            P  
Sbjct: 1   MVDKIERIKELVEILNKYSYDYYVLDNPSVSDKDYDKKYDELKLLEKE----TGFVLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-----KDDNSIFF 128
           P  +IG  +     K TH     SL+K  ++++++ +  R  +F  +     +D   + +
Sbjct: 57  PTLRIGDIVLDGFNKYTHKGKLWSLDKAQSLDEIKDWHNRNVKFVNEMRAQGEDLPDLKY 116

Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
               K DG  + + Y E+G    +A RG+G  GE+V+A ++ I +IP  L  N  ++ EV
Sbjct: 117 IATKKFDGLTVNLTYNEEGMLEVSATRGNGEIGENVTAQVKTIKSIPLKLQENH-DLFEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT 246
            GE  +++  F   N         P  N RN A+G LR LN  +   R L+ F + +G  
Sbjct: 176 HGEAIMTQEAFEKYNSSA----DSPLKNLRNGAAGALRNLNVKETARRDLSAFFYDVGYK 231

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K   EM+  ++  G PV++ ++   +   I +  + ++ IR  L YDIDGLV  +
Sbjct: 232 EGYQFKTYLEMMDFIKEKGLPVDDYLKVCVSIEDIKNEIDYIEKIRFDLNYDIDGLVIAI 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G + P A LEPV + G 
Sbjct: 292 DDIKTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRIGPTAILEPVELAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATL+N D IK            + +R+G  V ++R+ +VIP+++  + N    +++
Sbjct: 352 TVKRATLNNMDDIKR-----------KGVRIGADVFIRRSNDVIPEIMGTLENT-LENSE 399

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP C S VV +         A + C   L+C  Q ++ + H+ SRDA NI G 
Sbjct: 400 EIFPPIECPACGSHVVLN--------GAHYFCENTLSCKPQLVKTIVHYASRDAMNIAGF 451

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            ++  +  F+      +I+  +D++ L++    +      +  FGD    NL +++   +
Sbjct: 452 SEKTAEQLFEK----LNIKSISDLYKLKKEDLIN------LEKFGDKKAENLLNAVEGSK 501

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L  FI++LGI +VG + A+ +   + S                  +  L+ V  VGD
Sbjct: 502 ECKLYSFIYALGIPNVGVKTAKDIVNKFKSIDGLKNAT----------FEELVSVQDVGD 551

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I+A+ I+EF++  + I  ++ LL      I    K V S  ++K +V TGTLQ   R + 
Sbjct: 552 IVAKDIIEFFKEEKVISTIDELLSLGVNPIFDEVKIVESIFKDKTVVATGTLQNYSRTEI 611

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +  +  LGA VS  +S+KTD +I G++ GSKL KA++LGV++++EE+F  +L + +
Sbjct: 612 KTKLESLGAKVSGSVSKKTDYVIAGESAGSKLTKAEELGVEVISEEEFEKMLGRES 667


>gi|268679995|ref|YP_003304426.1| DNA ligase, NAD-dependent [Sulfurospirillum deleyianum DSM 6946]
 gi|268618026|gb|ACZ12391.1| DNA ligase, NAD-dependent [Sulfurospirillum deleyianum DSM 6946]
          Length = 648

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 216/701 (30%), Positives = 351/701 (50%), Gaps = 58/701 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E S   + +      YY    PI  D EYD L     A     P  A   D + P  ++
Sbjct: 4   QEYSEKIEILKAWAKAYYVDDAPIASDEEYDRLYHEILAFEKENPLFA---DESSPTKRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +     K +H     S+E +++  DL  +I R+ +        +  F  EPK DG  
Sbjct: 61  GGMVLEGFNKASHKARMWSMEDVFDEHDLDAWIERVKKV-----KENFTFYCEPKFDGAS 115

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + Y+KG    A  RGDG  GEDV+  ++ I +IP  L +    +IE+RGEV I K DF
Sbjct: 116 MNLIYDKGVLQQAITRGDGSIGEDVTQNVKTIGSIP--LQIAYEGLIEIRGEVVIKKADF 173

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
             LN+E +      +ANPRNAA+G LR+L+ +    R L F+  G+G  +++      E 
Sbjct: 174 ECLNEERLHTNEPLFANPRNAAAGSLRQLDTSVTAKRKLMFYPWGIG-ENQLVQTRLSEK 232

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           ++ +  LGF     +        +   Y+E+   R  +   +DG+V KVDE +LQ++LG 
Sbjct: 233 MRFVYDLGFLQPPRIVVTQNVEDVHMLYHELIETRDAIEMMMDGMVVKVDEIALQEELGY 292

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             + P+WM++ KF   +  T+L  I +Q+GRTG++TPVA +E VNI G ++  ATLHN D
Sbjct: 293 TVKYPKWMVAFKFPAIEKVTKLRAITLQVGRTGVVTPVAEVEAVNIEGVVVERATLHNFD 352

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +DIR+GD V++ R+G+VIPK++ ++V  R         P  CP+C
Sbjct: 353 EIER-----------KDIRIGDSVIIIRSGDVIPKIIKVLVERRDGTEVIPKRPLVCPVC 401

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
              ++ +          A      L+C A+ +  + HF S+ A NI+GLG + ++  +  
Sbjct: 402 GGELLDEG---------ALIKCQNLSCDARVVGAMIHFASKKALNIDGLGDKIIEQLYAQ 452

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           +     +    D++TL   Q         + GF      NL D+I + + ++LE+FI +L
Sbjct: 453 K----VVLHVKDLYTLSLEQL------LALEGFKVKKAQNLLDAIAQSKGVALEKFINAL 502

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI H+G   A+ +A+ +             +         +I +   G+ +A+++VEF  
Sbjct: 503 GIEHIGEVAAKKIARTFG------------LEWLEATHEQIIGLEGFGEEMAKSLVEFIH 550

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
              N    + L+  ++P   + E    S    K +V TG++ K  R + +  +  LGA V
Sbjct: 551 V--NAVETKELMGIIAPVASKLEI-TESVFTGKTVVLTGSMSK-SRDEMKAMLESLGAKV 606

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           S  +S+KTD +I G+  GSKL+KA +LGVK ++E +   +L
Sbjct: 607 SGSVSKKTDFVIFGEEAGSKLDKALELGVKTLSEAEVNEML 647


>gi|56416472|ref|YP_153546.1| DNA ligase [Anaplasma marginale str. St. Maries]
 gi|81359291|sp|Q5PBN8|DNLJ_ANAMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56387704|gb|AAV86291.1| DNA ligase [Anaplasma marginale str. St. Maries]
          Length = 673

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 253/709 (35%), Positives = 397/709 (55%), Gaps = 42/709 (5%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQAR+ L+ L  ++ +HD  Y+    P + D +YD L +    +   FPD+++ +D   
Sbjct: 2   LEQARRRLAGLNAKLRHHDVLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDISQYDD--- 58

Query: 74  PLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
             + +G   ++    KV H  P LSLE  + ++D+ KFITR+ RF + + D+ +  + E 
Sbjct: 59  YADVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCEL 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG   +  Y  GK    A RG+GH GED++     +  +P  L  + PE++EVRGE+Y
Sbjct: 119 KMDGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQL-DSAPEVLEVRGEIY 177

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +   DF  L       G   +ANPRNAA+G +R+LN   +        +           
Sbjct: 178 MHHEDFEKLR------GSCNFANPRNAAAGSIRQLNQKIVEERN--LSYVAYSAVNSTFA 229

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E+L+++   GF  N  V   +     +++YN + + RS L YDIDG+VYKV+  + Q
Sbjct: 230 TQQEILKQLDEWGFHTNKQVLFTDKIEEAIAFYNSVYTTRSALGYDIDGVVYKVNSTNFQ 289

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K LG   +SPRW I+HKF   +A T+LLDI +Q+GRTG++TP+A LEP+NIGG +++ A+
Sbjct: 290 KLLGATGKSPRWAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRAS 349

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN + I+            +D+R+GD V+VKRAGEVIP+VVD+    R    Q F FPS
Sbjct: 350 LHNLNEIER-----------KDVRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFPS 398

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S++ R+          A RC   L+C AQ LER+KHFVSRD  NI GLG +Q++
Sbjct: 399 HCPSCGSKLHREPGE------VALRCVAELSCKAQALERVKHFVSRDGLNIMGLGAKQIE 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
           FF         I   ADIF+L+ +        E+  G+G+ SV NL  +I     + L  
Sbjct: 453 FFCNH----GLIGSIADIFSLEEKLHGINLDTEH--GWGEKSVANLIAAIRNSATVRLSN 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR +G   A+ +A++Y SY+N+ Q +  +   ++      +++  +G+    ++
Sbjct: 507 FIFALGIRFIGVGAAKLVAEHYRSYKNWHQAMLALTETHDT-----VQIRGLGEKSISSL 561

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
             F+    N+  +E+L  +++           SS I  K +VFTGTL+ + R +A+    
Sbjct: 562 KAFFSVQGNLEVLESLSAKLNILDEASPAQRGSSAISGKTVVFTGTLESMSRTEAKLQAE 621

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LGA V+  +S  T +++ G NPGSK EKA  L V++++E+ ++ +++ 
Sbjct: 622 SLGAKVANSVSANTWLLVAGSNPGSKHEKALSLNVRVIDEQTWVKMVED 670


>gi|325283108|ref|YP_004255649.1| DNA ligase [Deinococcus proteolyticus MRP]
 gi|324314917|gb|ADY26032.1| DNA ligase [Deinococcus proteolyticus MRP]
          Length = 676

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 222/714 (31%), Positives = 361/714 (50%), Gaps = 49/714 (6%)

Query: 12  LSIEQA---RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +S + A     +   L  E+  H+  YY+   P I D EYDAL R+  A     P+ A +
Sbjct: 1   MSADAAPLTHDDYLRLRAELERHNRAYYEQDNPEIPDDEYDALARQVRAAEAEHPEWAAA 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK-DDNSIF 127
                P  ++GG ++ +   V H  P  SL+  ++  ++  +  R+ R      D     
Sbjct: 61  G---SPTERVGGAVSAAFEPVDHPTPMTSLDNAFDDSEMAGWQERLARALNLPPDHGDFA 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT E KIDG  + + Y  G+  +AA RG+G +GE V+A +  IP IP+ L     E+ EV
Sbjct: 118 FTGELKIDGLSVNLYYRDGELQWAATRGNGRTGEKVTAQLLTIPGIPQQLPGLSGEL-EV 176

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+++ DF A N     +G     NPRN A+G LR+ +P     R L    + LG+ 
Sbjct: 177 RGEVYLAREDFAAYNARAEELGEPLLKNPRNGAAGALRQKDPELTRRRGLKAIFYSLGRR 236

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
             + A+ Q+E+L+ +   GFP +   R   +    ++Y+ EM + R+ LP+D DG V K+
Sbjct: 237 DGVPARTQWEVLEWLAAQGFPTSPYSRPLGSLAEALAYHAEMTAARAALPFDADGTVIKL 296

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D   +Q++ G  +R+PRW I++KF  ++  T L  I + +GRTG +TP+A L P  I G+
Sbjct: 297 DSLRVQEEAGFTSRAPRWAIAYKFPVEEVETLLESISVGVGRTGKITPLAHLSPRLIEGS 356

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ ATLHNED+++ +           D+RVGD V+V+++G VIP+++ ++ + R  DAQ
Sbjct: 357 TVSRATLHNEDFVRDM-----------DLRVGDTVVVRKSGGVIPQIMRVLPDRRPADAQ 405

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           PF+FP+ CP C   +VR          A   C    AC AQQ ERL +FVSR+A +I G+
Sbjct: 406 PFAFPAECPECGHTLVRSEG------DANTYCPNP-ACPAQQFERLSYFVSREAMDIRGV 458

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ +            +R  AD + L   Q +       +   GD    N+   +   +
Sbjct: 459 GERLIRQLLAE----GLVRDAADFYFLSAEQLSG------LERSGDKKAANILAQLEASK 508

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L R I +LGI+HVG  ++++LA  + + +         +A              +GD
Sbjct: 509 TRPLWRVINALGIQHVGTRVSQALAAEFGTLERLLAADAPAVAAVP----------GLGD 558

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           +IA+ +V    +      +  L +         ++   + +     V TGTL +  R   
Sbjct: 559 VIAENLVAALHDGAMQNLLRRLEEAGVRPPETVQER-GTALSGLSFVITGTLSQ-PREYY 616

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +   GA V+  ++ KT  ++ G++ GSKL+KAQQLG  +++E     LL +
Sbjct: 617 KALLEAQGARVTGSVTGKTSFLLAGEDAGSKLDKAQQLGTAVLDEAGLEALLTE 670


>gi|313665597|ref|YP_004047468.1| DNA ligase (NAD(+)) [Mycoplasma leachii PG50]
 gi|312949194|gb|ADR23790.1| DNA ligase (NAD(+)) [Mycoplasma leachii PG50]
          Length = 668

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 228/709 (32%), Positives = 384/709 (54%), Gaps = 46/709 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S EQ    ++ L+++++     YY    P + D+EYD   +   ++ + +P+   S   
Sbjct: 1   MSKEQVLLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLENLYPEFITS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+GG +N    K+TH  P LSL  ++N ++  +F T++ +     ++    +  E
Sbjct: 58  DSPSQKVGGTVNEKFLKITHKTPMLSLGNVFNFDEFLEFNTQVSKVSNNLNN---EYVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++ YE G  V AA RG+G  GEDV+  ++ I +IP  L ++  E +EVRGE+
Sbjct: 115 LKIDGLSISLVYENGVLVSAATRGNGIVGEDVTINVKTIKSIP--LKISKKERVEVRGEI 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           Y+SK +F  +N + +      +ANPRNAA+G LR+L+   +             + +   
Sbjct: 173 YLSKAEFEKINKKRLLNSEDLFANPRNAAAGTLRQLDSKIVASRNLDAFLYYYISDDSAK 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             QYE + ++  LGF  N           I +Y  +  ++++ L Y IDG+V+K+++ +L
Sbjct: 233 LNQYESILRLNQLGFKTNKETMLCKNLDQIKAYIQKYTNLKNDLDYQIDGIVFKINDKNL 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q  LG  ++ P+W I++KF  +   T+LLD+   +GRTG +T  A+LEPV + GA I+ A
Sbjct: 293 QNSLGFTSKIPKWAIAYKFPAEIKQTKLLDVFATVGRTGKITYNAKLEPVFLMGAKISAA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TL+N +YIK            +D+R+   V +K+AG+VIP+V++ I +E     + F   
Sbjct: 353 TLNNAEYIK-----------TKDLRINSIVKIKKAGDVIPEVIEAIKDEDFYKLEKFKPA 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            +CP C S + ++            +     +CS + L  L+HF SR+A NI  LG + L
Sbjct: 402 LYCPNCYSLLEKNDGE-------VDQFCINSSCSMKILRSLQHFSSREAMNIVSLGDRSL 454

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +  F  +     I+  +DI+ L+  +     +I  I  FG  S  NL DSIN  +N SLE
Sbjct: 455 EILFNLK----IIQNISDIYKLEEYKD----QILAIDNFGLKSYLNLIDSINASKNNSLE 506

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +F LGIRH+G++ A+ LAK Y +  N               +  LI++  +G+ +A +
Sbjct: 507 KVLFGLGIRHIGSKTAKILAKKYQNIDNLMSA----------SYDELIQINSIGESLALS 556

Query: 612 IVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           IV++++   N+  +  L    ++ +    + N +S I NK  V TGTL +  R + +  +
Sbjct: 557 IVDWFKIEDNLKLINDLKSFNINFNYLGAKINSNSIIANKSFVITGTLTR-PREEFKTLI 615

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
                 +S  +S++TD ++VG+N GSKLEKA++LGVKI++E+ F  LL+
Sbjct: 616 ENNAGKISGSISKQTDYLLVGNNVGSKLEKAKKLGVKIIDEQHFFDLLK 664


>gi|332299534|ref|YP_004441455.1| DNA ligase [Porphyromonas asaccharolytica DSM 20707]
 gi|332176597|gb|AEE12287.1| DNA ligase [Porphyromonas asaccharolytica DSM 20707]
          Length = 679

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 211/722 (29%), Positives = 349/722 (48%), Gaps = 58/722 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++      E+  L   I  H+  YY  + P I D++YDAL +R   +    P+LA   DP
Sbjct: 1   MTRNNTELEIEQLRTTIEQHNRAYYLDNAPTISDADYDALMQRLLTLEAEHPELA---DP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++G + N +  +V H  P LSL   +N +++ +   R          + + +  E
Sbjct: 58  TSPSLRVGRDRNDAFVQVAHERPMLSLSNTYNYDEIAEICERTDTLL---ATDDVPWVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV------LSLNIPEII 185
            K DG+ I++ YE+G  V A  RGDG  G+DV+  +R I ++P                I
Sbjct: 115 MKYDGSSISLIYEEGVLVRAVTRGDGTLGDDVTVNVRTIQSVPLRLRPVAGHPDYTMGRI 174

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGEV +   +F  LN E  A G  P+ANPRNAA+G L+ LN      R L    + L 
Sbjct: 175 EVRGEVLLPFKEFERLNGERTAEGEAPFANPRNAAAGTLKTLNSRVVAQRRLLCICYYLY 234

Query: 245 KTSEIF--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
              +        YE ++ +  +GF       +++    +  Y +E    R  LPY  DG+
Sbjct: 235 ALDDETRLPDSYYERMKLLEEMGFNTGVAPFKSSDLSALYHYIDEWDVQRGDLPYATDGI 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVD  + Q+ LG  A+SPRW  ++K+  + A   LL +D Q+GR+G++TPVA +EPV 
Sbjct: 295 VLKVDSLTQQRTLGNTAKSPRWAFAYKYQPENARAELLSVDYQVGRSGVVTPVANVEPVL 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           I G ++  ATLHNE++IK L           D+   D V +++ GE+IPK+  +  + R 
Sbjct: 355 ISGTVVRRATLHNEEFIKSL-----------DLHYHDYVYIEKGGEIIPKITAVETSLRR 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P+++P   P  CP C + + +            + C    AC  Q + R++H+ +R A +
Sbjct: 404 PESEPVRLPELCPACGAPLQQIDG------SVGYYCVNSYACPPQIMGRIEHYCTRRAAD 457

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I    +     F +       I    D++ L          +  +  F + S+ NL  SI
Sbjct: 458 INVGPETIDSLFDR-----HLIENIDDLYKLTASD------LAQLPNFKEKSINNLLASI 506

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + ++    R ++ +GIR+VG   A++LA+++ S    AQ  +            L  +P
Sbjct: 507 EQSKSRPFARLLYGIGIRYVGEGTAKTLARHFQSIDRLAQATD----------YELQALP 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTL 658
            VG  IA+ +V F+   RN   +  L +       R E+   +     +E +++V +G+ 
Sbjct: 557 DVGPKIAEQVVYFFSLERNQQLIAELQRCGVILEERSEETTDAPQSNLLEGERIVISGSF 616

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
            +  R + ++ + Q G V    +S +T  +++G + G SK  KA+QLG+ ++ EE+FL  
Sbjct: 617 TQHSRDEYKQLIEQHGGVNVGSISGRTTFVLMGSDMGPSKRAKAEQLGIPLVTEEEFLAR 676

Query: 718 LQ 719
           L 
Sbjct: 677 LN 678


>gi|269303032|gb|ACZ33132.1| DNA ligase, NAD-dependent [Chlamydophila pneumoniae LPCoLN]
          Length = 662

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 226/708 (31%), Positives = 373/708 (52%), Gaps = 50/708 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E ++    +L +E+  HD  YY   +P I D EYD   R+   I  + P+       
Sbjct: 1   MKEENSQAHYLALCRELEDHDYSYYVLHRPRISDYEYDMKLRKLLEIERSHPEWKVLW-- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++G   + +   V+H  P LS+   ++ E+L +F +R+ +           +T+E
Sbjct: 59  -SPSTRLGDRPSGTFSVVSHKEPMLSIANSYSKEELSEFFSRVEKSLGTSP----RYTVE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + IRYE    V A  RG+G  GED++  IR I ++P  L  + PE IEVRGEV
Sbjct: 114 LKIDGIAVAIRYEDRVLVQALSRGNGKQGEDITLNIRTIRSLPLRLPEDAPEFIEVRGEV 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           + S + F  +N++   + +  +ANPRNAA G L+ L+P +   R L   ++ L    +  
Sbjct: 174 FFSYSTFQTINEKQQQLEKTIFANPRNAAGGTLKLLSPQEVAKRKLEISIYNLIAPGDND 233

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           +   YE LQ+    GFPV+   R  +T   ++S    +++ R++LP +IDG V KVD  +
Sbjct: 234 S--HYENLQRCLEWGFPVSGKPRLCSTPEEVISVLKTIETERASLPMEIDGAVIKVDSLA 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+ LG   +  RW +++K+A ++A T L DI +Q+GRTG+LTPVA+L PV + G+L++ 
Sbjct: 292 SQRVLGATGKHYRWALAYKYAPEEAETLLEDILVQVGRTGVLTPVAKLTPVLLSGSLVSR 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+L+NED I             +DIR+GD V V + GEVIPKVV +   +R   ++ ++ 
Sbjct: 352 ASLYNEDEIHR-----------KDIRIGDTVCVAKGGEVIPKVVRVCREKRPEGSEVWNM 400

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P FCP+C S VVR+ +  + +            C A  +E+++ FV R A NI+ LG + 
Sbjct: 401 PEFCPVCHSHVVREEDRVSVR-------CVNPECVAGAIEKIRFFVGRGALNIDHLGVKV 453

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F+       +   AD+F L             I G  + S  N+ +SI + +++ L
Sbjct: 454 ITKLFE----LGLVHTCADLFQLTTEDLM------QIPGIRERSARNILESIEQAKHVDL 503

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           +RF+ +LGI  +G  +A  LA ++ +                  +  L+ +  VG+ +A 
Sbjct: 504 DRFLVALGIPLIGIGVATVLAGHFETLDRVISAT----------FEELLSLEGVGEKVAH 553

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           AI E++ +  ++  ++ +          H     S    K  V TGTL+ + R  A+  +
Sbjct: 554 AIAEYFSDSTHLNEIKKMQDLGVCISPYH--KSGSTCFGKAFVITGTLEGMSRLDAETAI 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              G  V + +S++TD +++G+NPGSKLEKA++LGV I+++E F  L+
Sbjct: 612 RNCGGKVGSSVSKQTDYLVMGNNPGSKLEKARKLGVSILDQEAFTNLI 659


>gi|290580089|ref|YP_003484481.1| DNA ligase [Streptococcus mutans NN2025]
 gi|254996988|dbj|BAH87589.1| DNA ligase [Streptococcus mutans NN2025]
          Length = 652

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 219/701 (31%), Positives = 343/701 (48%), Gaps = 51/701 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ ++ L Q ++ +   YY    P + D+EYD L R    +   FP+   S   N P ++
Sbjct: 2   KERMNELVQLLNQYAREYYTKDNPSVSDAEYDKLYRELVELEKEFPEDILS---NSPTHR 58

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  +     K  H  P  SL+  ++ E+L  F  RI       +     +  E KIDG 
Sbjct: 59  VGDLVLDGFEKYRHEYPLFSLQDAFSREELNAFDRRIK-----AEFPQADYLAELKIDGL 113

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y  G+    A RGDG  GE+++  ++ +  IP  L  NI   + VRGE Y+ K  
Sbjct: 114 SISLTYVNGRLRVGATRGDGTVGENITENLKRVRDIPLHLPENI--DLTVRGECYLPKAS 171

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  +N E    G   +ANPRNAA+G LR+L+   +            +     A  Q  +
Sbjct: 172 FKTINAERRENGETEFANPRNAAAGTLRQLDTKVV-AKRKLATFIYQEAGPTAASSQEAV 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+    LGF VN     +++   I  +  ++   R+ L YDIDG+V KV+  +LQ+ LG 
Sbjct: 231 LESFAKLGFTVNPRHIISSSMDAIWQFIEDVAKERAELAYDIDGVVIKVNSLALQEALGF 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I++KF  ++ +  +L +D  +GRTG++TP A L PV + G  ++ ATLHN D
Sbjct: 291 TVKAPRWAIAYKFPAEEKTAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YI             +DIR+GD V+V +AG++IP V+ ++ N+R     P   P+ CP C
Sbjct: 351 YI-----------AEKDIRIGDIVVVYKAGDIIPAVLHVVENKR-DQQVPLPIPTVCPSC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           QS ++   +        A RC     C AQ  E L HF SRDA NI GLG   ++  F +
Sbjct: 399 QSELIHFEDE------VALRCVNPR-CPAQLKEELIHFASRDAMNIIGLGPAIVEKLFTA 451

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           E     I   ADI+ L             + G  + S T LY +I   +  S E+ +F L
Sbjct: 452 E----LICDVADIYQLTPENLM------QLEGIKEKSATKLYKAIQASKANSAEKLLFGL 501

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIRHVG++ +R L + + S +  A    + IA  +           +G +IA+++  ++ 
Sbjct: 502 GIRHVGSKASRLLMERFESLEQLAAADFDDIAAID----------GLGIVIAESLKTYFA 551

Query: 618 NPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                  +  L            +    + +    +V TG L  + R +A+E +  LGA 
Sbjct: 552 TAGAQKLLIELKTAGLNLTYLGKKTASDAALTGMTIVLTGKLANLTRSQAKEKLQSLGAN 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           V   +S+KT ++I G + GSKLEKA+ LG++I +E     L
Sbjct: 612 VVGSVSKKTSLVIAGSDAGSKLEKAKTLGIEIKDEAWLESL 652


>gi|116511279|ref|YP_808495.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris
           SK11]
 gi|122940331|sp|Q031P9|DNLJ_LACLS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116106933|gb|ABJ72073.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. cremoris SK11]
          Length = 686

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 217/733 (29%), Positives = 346/733 (47%), Gaps = 81/733 (11%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              ++     +++     YY   +P + DSEYD L      +    P L R+   + P +
Sbjct: 3   IESKIKEFTDQLNQFAYEYYTLDEPSVEDSEYDRLYHELVKLEQENPQLVRA---DSPTH 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
             GG +     K  H     SL  +++ E+L  +  R+ +     +  +  +  E KIDG
Sbjct: 60  WTGGVILDGFVKFRHPYNLYSLGDVFSREELALWEERVRK-----EIVNPEYICELKIDG 114

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +++ YE G  V AA RGDG +GE+++  ++ I  +P  L   I   I VRGE Y+ + 
Sbjct: 115 LSLSLYYENGLLVTAATRGDGTTGENITENVKRIKDVPLKLKEAI--DIVVRGEAYLPRQ 172

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
           +F  LN E    G  P+ANPRNAA+G LR+L+   +            + S      Q E
Sbjct: 173 NFAKLNAERELAGAAPFANPRNAAAGTLRQLDTKIV-AKRGLATFLYQEASPATNDTQEE 231

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +L+    LGF VN   + A     I  +  E   +R  LPYDIDG+V KV+  + Q++LG
Sbjct: 232 VLEYFEELGFQVNPERKFARNLDEIWEFIEEATRLRDELPYDIDGVVIKVNNLAEQEELG 291

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PRW I++KF  +QA T +L +D  +GRTG++TP A + PV +    +  ATLHN 
Sbjct: 292 FTVKAPRWAIAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTPVLLAQTTVARATLHNV 351

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP------------- 423
           DYI+            +DIR  D+V++ +AG++IPKV  +++ +R P             
Sbjct: 352 DYIQ-----------EKDIRNHDKVMIYKAGDIIPKVGKVLLEKRKPAKHLRKTHRANKY 400

Query: 424 -------------------DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLAC 464
                              +      P+ CP C S ++   +        A RC   L C
Sbjct: 401 VWTRFGRRSVEKGLVFSKREDNRVKIPTQCPECDSDLIHFEDE------VALRCVNPL-C 453

Query: 465 SAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI 524
            AQ  E+L HF SRDA NI GLG   +   F  +     +   AD++ L      +    
Sbjct: 454 PAQIREKLIHFASRDAMNIVGLGPSVISQLFDKK----LVTDVADLYQLTVEDLLT---- 505

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
             +    +     +  +I + R  S E+ +F LGIRHVG + A+ L + + + +  +Q  
Sbjct: 506 --LDKVKETLAQKIVSAIAQSRENSAEKLLFGLGIRHVGGKAAKLLLERFANLRALSQAS 563

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
                        +  +P +G +IA A+V +++       ++ L             NV 
Sbjct: 564 E----------EEISEIPSLGGVIATAVVSYFETAGAKTLLDELENAGLNFAYLGAVNVE 613

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +  K +V TG L  ++R +A+E +  LGA VS  +S+KTD+++ G+  GSKL KAQ L
Sbjct: 614 GILSGKTVVLTGKLTTLKRKEAKEKLEALGANVSGSVSKKTDLVVAGEEAGSKLTKAQDL 673

Query: 705 GVKIMNEEQFLFL 717
           G++I +E+  L L
Sbjct: 674 GIEIWSEQDLLDL 686


>gi|332970926|gb|EGK09901.1| NAD-dependent DNA ligase LigA [Kingella kingae ATCC 23330]
          Length = 785

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 252/814 (30%), Positives = 381/814 (46%), Gaps = 137/814 (16%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  Q + ++  L + ++ +   YY    P + DSEYD L R  + +   FP       P
Sbjct: 1   MSNTQIQNQIKHLTEILNRYAHEYYTLDAPSVPDSEYDKLYRELEQLERDFPYF---RLP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI---------EDLRKFITRIYRFWQKKD 122
             P N++GG +      V H++P LSL   ++           +   F  R+ +   +  
Sbjct: 58  ESPTNRVGGAILSEFASVRHAVPMLSLNNAFSPRDESGAYDHAETLAFNERVCKDLNQA- 116

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI- 181
                +T+EPK DG  +++ Y+ G F+ AA RGDG  GEDV+  I+ +  IP  L     
Sbjct: 117 --QTEYTIEPKFDGLAVSLLYQNGIFIQAATRGDGTIGEDVTENIKTVRNIPLKLHGKNI 174

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFV 240
           P +IEVRGEV + K DF  LN    A G+KP+ANPRNAA+G LR+LN      R L+FF 
Sbjct: 175 PNLIEVRGEVLMLKADFATLNARQEAAGQKPFANPRNAAAGSLRQLNSRVAAERKLHFFG 234

Query: 241 HGLGK--TSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           +G+ +    E   +   E L  ++ LGF               ++  Y ++   R  LPY
Sbjct: 235 YGIARLDGVENPPQTHAEELLWLQELGFSLPTGNWHICANIAEVLQQYEQLAEKRPNLPY 294

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KV+    Q++LG  +R+PRW I+HKF  ++A T +  ID+Q+GRTG +TPVAR
Sbjct: 295 EIDGMVIKVNSLIEQEKLGFVSRAPRWAIAHKFPAEEAITIVEAIDVQVGRTGAITPVAR 354

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           L+PV +GG ++TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV ++
Sbjct: 355 LQPVAVGGVVVTNATLHNQDEVAR-----------KDVRVGDSVIVRRAGDVIPEVVRVV 403

Query: 418 VNERH----------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461
           +  R                 P    F  P  CP+C S + R+         A  RC+GG
Sbjct: 404 LERRPMVQELGADLFSETVEKPKFSAFRLPELCPVCNSPIEREDGE------AVARCSGG 457

Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
           + C AQ+ + L HF +R A +I GLG +Q++   + +     +   ADI+ L        
Sbjct: 458 MLCQAQRAQGLIHFSARKAMDIVGLGDRQIEALVEQD----VLHSFADIYQL---DIAKL 510

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
            KI++          N+   I   R   L RF+F+LGIRHVG   A+ LA  +       
Sbjct: 511 QKIKDSKSSATKWAENILTGIENSRKPLLSRFLFALGIRHVGESTAKQLANAFGDLATVR 570

Query: 582 QEINNIIA--------------------HNNDDWLSLIRV-------------------- 601
                I+A                            L+ V                    
Sbjct: 571 HAPEPILACLPDIGGVVAQSIAHYFRQPAQQKLLDDLLAVGVEPQHAVLSTNVREFATPA 630

Query: 602 --------PLVGDIIAQAIVEF-----------------YQNPRNICAVEALLKEVSPSI 636
                     + +  AQ + +                  +QN  NI    ALL+EV   +
Sbjct: 631 RWISRLPNYKISEKRAQELWDLAGGSVEGLLSDKVLPIEWQNWCNIAENAALLREVGEFL 690

Query: 637 GRHEK------------NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
               +            ++++ I  K  V TGTL  ++R +A   +   G  VS  +S+K
Sbjct: 691 AMLPEFGATNAENAVLGSLNNLIAGKTFVLTGTLPTLKRDEAAAMIEAAGGKVSGSVSKK 750

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           TD ++ GD  GSKLEKA  LGV +++E++FL +L
Sbjct: 751 TDFVVAGDAAGSKLEKALSLGVAVLSEDEFLAML 784


>gi|58696662|ref|ZP_00372215.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58537163|gb|EAL60267.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 656

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 267/697 (38%), Positives = 395/697 (56%), Gaps = 49/697 (7%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
             L+ +I+YH+  Y+Q +KP I D+EYD LK++   I    P++  +++       +G  
Sbjct: 3   EKLQDQINYHNVLYHQKNKPEISDAEYDELKKKLAEIE---PEIYATQES------VGAP 53

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
            +    KV H  P LSLE  ++ + + KF+++I RF  +   + I    EPKIDG   + 
Sbjct: 54  PDERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLIE---DKIEILCEPKIDGLSFSA 110

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
            YE G+FV AA RGDG  GEDV+  +  I   P+ L       +EVRGE+YIS +DFL L
Sbjct: 111 IYEDGRFVKAATRGDGFVGEDVTHNVATIKGFPKFLQGV-QGRLEVRGEIYISNSDFLKL 169

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
           N+         +ANPRNAA+G L++L+            +          K Q E+L K+
Sbjct: 170 NEN------DEFANPRNAAAGSLKQLDANITASRP--LRYFAYSLIGGAEKSQSEVLNKL 221

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             LGF VN      ++  G++ +YNE+ + R  L YDIDG+VYKV++  LQ +LG   ++
Sbjct: 222 EALGFCVNEHQSLTSSLDGMLKFYNEVYNCRYNLDYDIDGIVYKVNDLVLQNRLGNTHKA 281

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PR  +++KF+   A T+L  I IQ+GRTG+LTPVA L PVNIGG L++ A+LHN+D IK 
Sbjct: 282 PRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQDEIKR 341

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR GD V +KRAG+VIP++V++  + R P+   F FP  CP C S+V
Sbjct: 342 -----------KDIREGDIVTIKRAGDVIPQIVEVSRDSRLPNTPEFVFPEVCPECGSKV 390

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            +          AA RC    AC AQ +E+LKHFVS+DAF+I GLG +Q++FF+      
Sbjct: 391 RQVEGE------AAVRCPEEFACKAQIIEKLKHFVSKDAFDIVGLGDKQIEFFYD----L 440

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             I+   DIFTL+ R       +E   G+G  S+ +L ++I  RR I+L+RFIFSLGIR 
Sbjct: 441 GLIKQIPDIFTLEERL--DEFNLEEQSGWGKKSIAHLLNAIQSRRVITLDRFIFSLGIRF 498

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           +G   A  LA YY+SY N+   +  +    + D   L+ +  +G  +A+++  F+    N
Sbjct: 499 IGQVAAELLADYYVSYDNWYNSMIEL----SSDNTELVGIDGIGKKVAESLESFFSKEHN 554

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I  +  L   +         + S     K +VFTG L  + R +A+     LGA VS+ L
Sbjct: 555 IKMLNDLTACLQILPVSSNSSNSVLNN-KIIVFTGKLLAMSRGEAKVRAKTLGAKVSSHL 613

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           S KTD +I G+ PGSK +KA +LGV+I++E+Q+  ++
Sbjct: 614 SAKTDYLIAGEKPGSKYKKAVELGVEILDEDQWHKVI 650


>gi|225630391|ref|YP_002727182.1| DNA ligase [Wolbachia sp. wRi]
 gi|254782311|sp|C0R399|DNLJ_WOLWR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225592372|gb|ACN95391.1| DNA ligase [Wolbachia sp. wRi]
          Length = 662

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 267/697 (38%), Positives = 395/697 (56%), Gaps = 49/697 (7%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
             L+ +I+YH+  Y+Q +KP I D+EYD LK++   I    P++  +++       +G  
Sbjct: 9   EKLQDQINYHNVLYHQKNKPEISDAEYDELKKKLAEIE---PEIYATQES------VGAP 59

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
            +    KV H  P LSLE  ++ + + KF+++I RF  +   + I    EPKIDG   + 
Sbjct: 60  PDERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLIE---DKIEILCEPKIDGLSFSA 116

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
            YE G+FV AA RGDG  GEDV+  +  I   P+ L       +EVRGE+YIS +DFL L
Sbjct: 117 IYEDGRFVKAATRGDGFVGEDVTHNVATIKGFPKFLQGV-QGRLEVRGEIYISNSDFLKL 175

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
           N+         +ANPRNAA+G L++L+            +          K Q E+L K+
Sbjct: 176 NEN------DEFANPRNAAAGSLKQLDANITASRP--LRYFAYSLIGGAEKSQSEVLNKL 227

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             LGF VN      ++  G++ +YNE+ + R  L YDIDG+VYKV++  LQ +LG   ++
Sbjct: 228 EALGFCVNEHQSLTSSLDGMLKFYNEVYNCRYNLDYDIDGIVYKVNDLVLQNRLGNTHKA 287

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PR  +++KF+   A T+L  I IQ+GRTG+LTPVA L PVNIGG L++ A+LHN+D IK 
Sbjct: 288 PRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQDEIKR 347

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR GD V +KRAG+VIP++V++  + R P+   F FP  CP C S+V
Sbjct: 348 -----------KDIREGDIVTIKRAGDVIPQIVEVSRDSRLPNTPEFVFPEVCPECGSKV 396

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            +          AA RC    AC AQ +E+LKHFVS+DAF+I GLG +Q++FF+      
Sbjct: 397 RQVEGE------AAVRCPEEFACKAQIIEKLKHFVSKDAFDIVGLGDKQIEFFYD----L 446

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             I+   DIFTL+ R       +E   G+G  S+ +L ++I  RR I+L+RFIFSLGIR 
Sbjct: 447 GLIKQIPDIFTLEERL--DEFNLEEQSGWGKKSIAHLLNAIQSRRVITLDRFIFSLGIRF 504

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           +G   A  LA YY+SY N+   +  +    + D   L+ +  +G  +A+++  F+    N
Sbjct: 505 IGQVAAELLADYYVSYDNWYNSMIEL----SSDNTELVGIDGIGKKVAESLESFFSKEHN 560

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I  +  L   +         + S     K +VFTG L  + R +A+     LGA VS+ L
Sbjct: 561 IKMLNDLTACLQILPVSSNSSNSVLNN-KIIVFTGKLLAMSRGEAKVRAKTLGAKVSSHL 619

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           S KTD +I G+ PGSK +KA +LGV+I++E+Q+  ++
Sbjct: 620 SAKTDYLIAGEKPGSKYKKAVELGVEILDEDQWHKVI 656


>gi|187932891|ref|YP_001884644.1| NAD-dependent DNA ligase LigA [Clostridium botulinum B str. Eklund
           17B]
 gi|254781292|sp|B2TIZ7|DNLJ_CLOBB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|187721044|gb|ACD22265.1| DNA ligase, NAD-dependent [Clostridium botulinum B str. Eklund 17B]
          Length = 667

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 203/716 (28%), Positives = 354/716 (49%), Gaps = 56/716 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + +  L + ++ +   YY    P + D +YD        +            P  
Sbjct: 1   MVDKIERIKELVEILNKYSYDYYVLDNPSVSDKDYDKEYDELKLLEKE----TGFVLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-----KDDNSIFF 128
           P  +IG  +     K TH     SL+K  ++++++ +  R  +F  +     +D   + +
Sbjct: 57  PTLRIGDVVLQGFNKYTHKGKLWSLDKAQSLDEIKDWHNRNIKFVNEMRAQGEDLPDLKY 116

Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
               K DG  + + Y + G    +A RG+G  GE+V++ ++ I +IP  L  N  ++ EV
Sbjct: 117 IATKKFDGLTVNLTYNKGGMLEVSATRGNGEIGENVTSQVKTIKSIPLKLQEN-DDLFEV 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT 246
            GE  +++  F   N         P  N RN A+G LR LN  +   R L+ F + +G  
Sbjct: 176 HGEAIMTQEAFEKYNASA----DIPLKNLRNGAAGALRNLNIKETARRDLSAFFYDVGYK 231

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K   EM+  ++  G P++  ++   +   I      ++ IR  L YDIDGLV  +
Sbjct: 232 EGYQFKTYLEMMDFIKEKGLPIDEYLKVCTSIDDIKKEIEYIEKIRFDLNYDIDGLVIAI 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G + P A LEPV + G 
Sbjct: 292 DDIRTRELLGYTVKYPKWAIAYKFEAQEATTKLLDVEWNVGRSGRIGPTAILEPVELAGV 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATL+N D IK            + +R+G  V V+R+ +VIP+++  + N    +++
Sbjct: 352 TVKRATLNNMDDIKR-----------KGVRIGADVFVRRSNDVIPEIMGTLENT-LENSE 399

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P+ CP C S VV +         A + C   L+C  Q ++ + H+ SRDA NI G 
Sbjct: 400 EICPPTECPACGSHVVLN--------GAHYFCENTLSCKPQLVKTIVHYASRDAMNIAGF 451

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            ++  +  F+      +I+  +D++ L++    +      +  FG+    NL ++I K +
Sbjct: 452 SEKTAEQLFEK----LNIKSISDLYKLKKEDLIN------LEKFGEKKSENLLNAIEKSK 501

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +  L  FI++LGI +VG + A+ +   + S                  +  L+ V  VGD
Sbjct: 502 DCKLYSFIYALGIPNVGVKTAKDIVNKFKSIDGLKNAT----------FEELVSVQDVGD 551

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I+AQ ++EF++  + I  ++ LL      I    K V S  ++K +V TGTLQ   R + 
Sbjct: 552 IVAQDVIEFFKEEKVINTIDELLNLGVNPIFDEVKIVESIFKDKTVVTTGTLQNYSRTEI 611

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +  +  LGA VS  +S+KTD +I G++ GSKL KA++LGVKI++EE+F  +L + +
Sbjct: 612 KTKLESLGAKVSGSVSKKTDYVIAGESAGSKLTKAEELGVKIISEEEFEKMLGRES 667


>gi|189184847|ref|YP_001938632.1| NAD-dependent DNA ligase LigA [Orientia tsutsugamushi str. Ikeda]
 gi|254781383|sp|B3CVK1|DNLJ_ORITI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189181618|dbj|BAG41398.1| DNA ligase [Orientia tsutsugamushi str. Ikeda]
          Length = 699

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 254/718 (35%), Positives = 413/718 (57%), Gaps = 32/718 (4%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I IE L+ + A+K +  L  E+  +D  YY  + P++ D++YD LK   + I   FP LA
Sbjct: 9   INIEQLTSDHAKKIVDFLALELQKYDQAYYSDNNPLVTDAQYDVLKNLNNKIVAKFPHLA 68

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              D      K+G   +    KV H  P LSL   + +ED+  FIT+I  F   K D+  
Sbjct: 69  LVNDH---SKKVGFTPSAQFSKVVHLKPMLSLANGFCVEDISNFITKIQNFL--KIDHCP 123

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
               E KIDG     RYE G    A+ RGDG  GE+++  ++ I + P+ L +   ++ E
Sbjct: 124 KIVCEYKIDGLSFNARYEYGVLTLASTRGDGQIGENITENLKTIQSFPQTLPIT-DKVFE 182

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGE+YI+ NDF  LN +   +G+  ++NPRNAA+G +R+L+P     R L +FV+ LG+
Sbjct: 183 VRGEIYITNNDFRVLNIQQQKLGKALFSNPRNAAAGSIRQLDPAITAQRPLKYFVYALGE 242

Query: 246 TSEIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
            +       Q+E+LQK+  L F VN     ++  H ++ +YN + + R+ L ++IDG+VY
Sbjct: 243 VTNHHFASTQFELLQKLSQLKFSVNTDYILSDNLHSMIEFYNNVATERNNLAFEIDGVVY 302

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++F+LQ++LG  + SPR+ I++KF      T++ +I +Q+G+TG +TPVA L P+NI 
Sbjct: 303 KVNDFALQERLGATSTSPRFAIAYKFPALIGRTKITNITLQVGKTGAVTPVAWLIPINIA 362

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-P 423
           G  I+ ATLHN+  I+            +DIR+GD V + RAG+VIPK+  + ++ R   
Sbjct: 363 GVTISRATLHNKQEIES-----------KDIRIGDYVFLHRAGDVIPKINGVDLSARDTQ 411

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            ++ F FP+ CP C   +V +            RC   LAC AQ  ER+ HFVS+DA NI
Sbjct: 412 SSERFIFPTTCPSCNQNLVVNEGET------VARCGNSLACQAQIYERICHFVSKDALNI 465

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR-QQTSTTKIENILGFGDVSVTNLYDSI 542
           +GLGKQ++ F   ++     I    DIF L+   +   + K+E+I G+G  SV  L+ +I
Sbjct: 466 DGLGKQRIQFLLDNK----YIVNIVDIFLLEENNKFLYSNKLEDIAGWGIKSVNKLFQNI 521

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           N+ +N+ L++FI++L I+HVG   A+ LAK + + +NF  +   +  +  + +  L  + 
Sbjct: 522 NQAKNVILDKFIYALAIKHVGKYSAKLLAKEFKTAKNFINQSLKLANNATEIYEKLRNIE 581

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            VG   A  + +F+    N+  +  L+  ++    ++  + +  + N+ +VFTGT   + 
Sbjct: 582 GVGVKTADQLKQFFMVSANVNLITKLVNILTIQDWQYHGD-NLLLSNQTIVFTGTFATVS 640

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R + +    +LGA V   +S  TD+++VG+  G+KL+KAQQLG+KI+NEE+++ ++ +
Sbjct: 641 RSEIKVQAEKLGAKVGTQVSNNTDLLVVGNKAGNKLQKAQQLGIKIINEEEWIKMVNE 698


>gi|254456450|ref|ZP_05069879.1| DNA ligase, NAD-dependent [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083452|gb|EDZ60878.1| DNA ligase, NAD-dependent [Candidatus Pelagibacter sp. HTCC7211]
          Length = 676

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 257/712 (36%), Positives = 412/712 (57%), Gaps = 43/712 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  ++ +K      + ++ ++  YY  +KP+I D  YD LK    ++   +  LA  + P
Sbjct: 1   MDKKEIQKLYQEKIKLLNKYNQYYYDKNKPLIDDKNYDELKISILSLEKKYNFLASKKSP 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +      G + + +  K  H +P LSL   ++ EDL  F  +I  F  + ++  ++++ E
Sbjct: 61  SEIT---GYKPSKNFKKSAHKVPMLSLANAFSEEDLINFEKKILNFLSENENFKLYYSAE 117

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190
           PKIDG   ++ Y+ GKFV    RGDG  GED+++ +  I  IP+ + + N PE I++RGE
Sbjct: 118 PKIDGISASLTYKNGKFVKGLSRGDGKEGEDITSNLETIKDIPKKISNKNFPEEIDIRGE 177

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEI 249
           V+I  +DF           +  +ANPRNAASG LR+ +P D ++    F  +  G   ++
Sbjct: 178 VFIKNSDFENF--------KDKFANPRNAASGSLRQKDPNDTSKIPLKFIAYTFGYEKKL 229

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q++ L+++   GF  N   +  +    ++  YNE++  R+ + +DIDG+VYKV+ F
Sbjct: 230 NIDNQFDFLKRLNEWGFKTNPLNKLISGVKNLLINYNEIEKKRAEIDFDIDGIVYKVNNF 289

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQK+LG  A +PRW ++HKF+  +A ++++ IDIQIGRTG LTPVA+++PVNIGG  ++
Sbjct: 290 KLQKRLGNVANAPRWAVAHKFSSNKAVSKIISIDIQIGRTGALTPVAKIKPVNIGGVQVS 349

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           NATLHNED I             +D+RVGD V+V+RAG+VIP ++ + +N+R   +  F 
Sbjct: 350 NATLHNEDEIMR-----------KDVRVGDTVVVERAGDVIPHILTVDINKRSKKSIKFV 398

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGK 488
           FP  CP C S+  ++ N  T K  A  RCT     C    +E+LKHFVS++AFNIEGLGK
Sbjct: 399 FPKKCPSCGSKTTKEYNEITKKNDAVRRCTSEGYECEKISIEKLKHFVSKEAFNIEGLGK 458

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++ F+K +     IR+P DIF L         +IEN+ G+G +SV NL  SIN+++NI
Sbjct: 459 KIIENFWKLK----LIRLPQDIFRL------DYNRIENLEGWGRLSVENLKYSINEKKNI 508

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SLER I++LGIRH+G E A+ L+K++ ++ NF +  N        ++  L+ V  +G+  
Sbjct: 509 SLERLIYALGIRHIGLENAKLLSKFFKTFSNFKELSNK------SNYNDLLNVDKIGETQ 562

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
             +I  F+ N  N   +  L KE+S      EK  +  ++N   + TG L  I R + + 
Sbjct: 563 VSSIKSFFSNKINNEIINQLSKELSIKNTLIEKK-NGLLKNYTFMITGKLSGISRAEIKS 621

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQ 719
            + +      + +++K D +I+GD P   K+E A++L +KI+N+ QFL +L 
Sbjct: 622 LIEENSGSTVSSVTKKLDYLIIGDKPTKRKIETAKELRIKIINQSQFLKMLN 673


>gi|309803834|ref|ZP_07697919.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 11V1-d]
 gi|312870780|ref|ZP_07730886.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 3008A-a]
 gi|312873110|ref|ZP_07733169.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2062A-h1]
 gi|308164068|gb|EFO66330.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 11V1-d]
 gi|311091343|gb|EFQ49728.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2062A-h1]
 gi|311093656|gb|EFQ51994.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 3008A-a]
          Length = 672

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 213/718 (29%), Positives = 356/718 (49%), Gaps = 51/718 (7%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L   
Sbjct: 1   MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            DP+    ++GG     L KV H  P LS+  +++ ++L +F  RI +       + + +
Sbjct: 59  -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVG----HVVDY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +E KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   IEVR
Sbjct: 114 NVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DIEVR 171

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+     +              
Sbjct: 172 GECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPP 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V KVD+
Sbjct: 232 ETITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDD 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G ++
Sbjct: 292 LALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   + P+
Sbjct: 352 SRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPY 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C   +V   +        A RC   + C AQ  E + HF SR A NI GLG 
Sbjct: 401 EIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVGLGP 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +            +   AD++ L   Q         +  F D S+ NL ++I   +  
Sbjct: 454 KIVRQLI----ALHLVNDIADLYFLSAAQL------AKLDHFKDKSIQNLLNAIENSKQN 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           S+E  +F LGI HVGA+ AR +A+ +       +               L+++  +G  I
Sbjct: 504 SVELLLFGLGIDHVGAKAARLIAQKFHDLNTIREC----------SIADLMQIDTIGQAI 553

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           A+++V++++       ++ L               +    +  + K +V TG L    R 
Sbjct: 554 AESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKEKNVVLTGKLAHYSRA 613

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
              + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +  L    
Sbjct: 614 DLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVVAKLNSQK 671


>gi|224372650|ref|YP_002607022.1| NAD-dependent DNA ligase LigA [Nautilia profundicola AmH]
 gi|254781379|sp|B9L8R4|DNLJ_NAUPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|223589900|gb|ACM93636.1| DNA ligase, NAD-dependent [Nautilia profundicola AmH]
          Length = 656

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 201/703 (28%), Positives = 342/703 (48%), Gaps = 55/703 (7%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
                  +      YY    P++ D EYD L    +      PD     DP  P  ++G 
Sbjct: 8   YKKAVDTLKKWAYYYYVLDNPLVTDEEYDKLYHEVEEYEKKHPDKI---DPTSPTQRVGD 64

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
            +     K  H     S+E ++N +D   ++ R+ R        +  F +EPK DG  + 
Sbjct: 65  VVLEGFEKAKHLSRMWSMEDVFNEKDFLDWVGRVKRILG---HENFSFYIEPKFDGASLN 121

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YE GK + A  RGDG  GEDV+   + I +IP  +      +IE+RGEV I K+DF  
Sbjct: 122 LIYENGKLIRAETRGDGEIGEDVTLNAKTINSIPLEIKE--KSLIEIRGEVVIKKDDFDK 179

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           LN+E +  G   +ANPRNAA+G LR+L+P     R L F+  G+G  + +  +   E++ 
Sbjct: 180 LNEERLKNGEPTFANPRNAAAGSLRQLDPKITAKRPLIFYPWGVG-VNSLNYERYSELMD 238

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +  LGF              +   Y+E   +R +    +DG+V K+DE      LG   
Sbjct: 239 YIYSLGFKEPPKRGVCKDIPCVEKKYDEFVKLRDSFEVMLDGMVVKIDEIKYHDILGYTQ 298

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           + PRWM+++KF   +  T + D+ +Q+GRTG+LTPVA L+PV IGG ++  ATLHN D I
Sbjct: 299 KYPRWMVAYKFPAIEKETIIEDVIVQVGRTGVLTPVAVLKPVEIGGVIVERATLHNFDEI 358

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           + +           DIR+GD V+V R+G+VIPK+  ++  +R  D +P   P+ CP+C +
Sbjct: 359 ERM-----------DIRIGDHVIVIRSGDVIPKITKVLTWKRKGDEKPIPRPTHCPVCGA 407

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            V+ +          A      L+C A+ +  + +F S++  +IEGLG+      ++   
Sbjct: 408 EVLDEG---------ALIKCQNLSCPARVVNTIIYFASKNCLDIEGLGESVAKLLYEH-- 456

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               ++   D+F L+          E +  F      NL ++I  +  +   RF+ +LGI
Sbjct: 457 --GLVKDVTDLFELKVEDL------EKLPLFARKKAENLVNAIKSKVGVECWRFVNALGI 508

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
            H+G   ++ + + +   + +                           + ++I E+ +  
Sbjct: 509 EHIGEVASKKICEKFG-VEFYKHAPEEFEEIEGFG-----------PEMVKSIAEYIRV- 555

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
            N   +E L++ + P     ++   +    K +V TGT+ K  R + ++ +  +GA VS+
Sbjct: 556 -NKEKIEKLIEILKPKNPEKKEVQKTPFTGKTVVLTGTMSK-PRSEIKKMLEDMGAKVSS 613

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +S+KTD +I G++ GSK +KA++LGV +++E+    +L++  
Sbjct: 614 SVSKKTDFVIYGEDAGSKYDKAKKLGVNLLSEDDMWKMLKEGK 656


>gi|148284934|ref|YP_001249024.1| NAD-dependent DNA ligase LigA [Orientia tsutsugamushi str. Boryong]
 gi|166216222|sp|A5CEY0|DNLJ_ORITB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146740373|emb|CAM80812.1| NAD-dependent DNA ligase [Orientia tsutsugamushi str. Boryong]
          Length = 698

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 253/718 (35%), Positives = 413/718 (57%), Gaps = 32/718 (4%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I IE L+ + A+K +  L  E+  +D  YY  + P++ D++YD LK   + I   FP LA
Sbjct: 9   INIEQLTSDHAKKIVDFLALELQKYDQAYYSDNNPLVTDAQYDVLKNLNNKIVAKFPHLA 68

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              D      K+G   +    KV H  P LSL   + +ED+  FIT+I  F   K D+  
Sbjct: 69  LVNDH---SKKVGFTPSAQFSKVVHLKPMLSLANGFCVEDISNFITKIQNFL--KIDHCP 123

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
               E KIDG     RYE G    A+ RGDG  GE+++  ++ I + P+ L +   ++ E
Sbjct: 124 KIVCEYKIDGLSFNARYEYGVLTLASTRGDGQIGENITENLKTIQSFPQTLPIT-DKVFE 182

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGE+YI+ NDF  LN +   +G+  ++NPRNAA+G +R+L+P     R L +FV+ LG+
Sbjct: 183 VRGEIYITNNDFRVLNIQQQKLGKALFSNPRNAAAGSIRQLDPAITAQRPLKYFVYALGE 242

Query: 246 TSEIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
            +       Q+E+LQK+  L F VN     ++  H ++ +YN + + R+ L ++IDG+VY
Sbjct: 243 VTNHHFASTQFELLQKLSQLKFSVNTDYILSDNLHSMIEFYNNVATERNNLAFEIDGVVY 302

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++F+LQ++LG  + SPR+ I++KF      T++ +I +Q+G+TG +TPVA L P+NI 
Sbjct: 303 KVNDFALQERLGATSTSPRFAIAYKFPALIGRTKITNITLQVGKTGAVTPVALLIPINIA 362

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP- 423
           G  I+ ATLHN+  I+            +DIR+GD V + RAG+VIPK+  + ++ R   
Sbjct: 363 GVTISRATLHNKQEIES-----------KDIRIGDYVFLHRAGDVIPKINGVDLSARDAQ 411

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
            +  F FP+ CP C   +V +            RC   LAC AQ  ER+ HFVS+DA NI
Sbjct: 412 SSTRFIFPATCPSCNQNLVVNEGET------VARCGNSLACPAQIYERICHFVSKDALNI 465

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR-QQTSTTKIENILGFGDVSVTNLYDSI 542
           +GLG+Q++ F   ++     I    DIF L+   +  S+ K+E+I G+G  SV  L+ +I
Sbjct: 466 DGLGRQRIRFLLDNK----YIVNIVDIFLLEENNKLLSSNKLEDIAGWGIKSVNKLFKNI 521

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           N+ +N+ L+RFI++L ++HVG   A+ LAK + + +NF  +   +  +  + +  L  + 
Sbjct: 522 NQAKNVILDRFIYALAVKHVGKYSAKLLAKEFKTAKNFIDQSLKLANNVTEIYEKLCNIE 581

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G   A  + +F+    N+  +  L+  ++    ++  + +  + N+ +VFTGT   + 
Sbjct: 582 GLGVKTADQLKQFFMVSANVNLITKLVNILTIQDWQYHGD-NLLLSNQTIVFTGTFATVS 640

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R + +    +LGA V   +S  TD+++VG+  G+KL+KAQQLG+KI+NEE+++ ++ +
Sbjct: 641 RSEIKVQAEKLGAKVGTQVSNNTDLLVVGNKAGNKLQKAQQLGIKIINEEEWIKMVNE 698


>gi|255526475|ref|ZP_05393386.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7]
 gi|296184848|ref|ZP_06853259.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7]
 gi|255509857|gb|EET86186.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7]
 gi|296050630|gb|EFG90053.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7]
          Length = 669

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 206/716 (28%), Positives = 357/716 (49%), Gaps = 58/716 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +I+  ++++  L +E++ +   YY    P + D EYD        +            P 
Sbjct: 3   TIDTKKEQIEKLVEELNKYAQEYYLLDNPSVSDKEYDLRYDELLKLEKE----TGIILPY 58

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ------KKDDNSI 126
            P  ++G  +     K TH     SL+K   ++ +  +  R  +         ++    +
Sbjct: 59  SPTQRVGDNILKEFQKYTHKGKLWSLDKSQTVQGIIDWHVRNKKAVDDYNSTHEEKLPQL 118

Query: 127 FFTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
            + +  K DG  I   Y E G  + AA RG G  GED++A  R I ++P  L +N   +I
Sbjct: 119 EYVITKKFDGLTINCTYDENGILIKAATRGTGEVGEDITAQARTIMSLP--LKINNSNVI 176

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244
           EV GE  +++  F   N         P  N RN A+G LR LN  +   R L+ F + +G
Sbjct: 177 EVHGEAIMTREAFEEYNKSA----AVPLKNLRNGAAGALRNLNIKETARRKLSAFFYDVG 232

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                  K  +EM+  ++ +GFP++N ++  ++   I +    ++ IRS L YDIDG+V 
Sbjct: 233 YNEGAPFKTYFEMMNFIKNMGFPLDNYIKICSSIEEIENELKYVEEIRSELNYDIDGVVI 292

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
            +++   ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G +TP A LEPV + 
Sbjct: 293 AINDMKTREILGYTIKFPKWAIAYKFEAEEATTKLLDVEWNVGRSGRVTPTAILEPVELA 352

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +  ATL+N D IK            +++R+G  V V+R+ +VIP+++ ++ +     
Sbjct: 353 GVTVKRATLNNMDDIKR-----------KEVRIGCSVFVRRSNDVIPEIMGVVQDT-LEG 400

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           +     P  CP C S +V+D           + C   L+C  Q ++ + HF SR+A NIE
Sbjct: 401 SIEIQAPEKCPYCDSELVQD--------GVHYFCDNTLSCKPQMVKSIVHFGSREAMNIE 452

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G  ++  +  F+  +    I+   D++ +++           +  F +    NL ++I K
Sbjct: 453 GFSEKTAEQLFEKLE----IKSIPDLYRIKKEDLM------QLDKFAEKKAQNLVNAIEK 502

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            +N SL  FI++LGI ++G + A  L K + S  N  Q               L+ +  V
Sbjct: 503 SKNCSLASFIYALGIPNIGKKTATDLVKNFKSLDNIIQSSE----------EELVSIQDV 552

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G+I+A++I+EF+   + I ++  LL+     I   E+   S   +K +V TG+L+   R 
Sbjct: 553 GEIVAKSIIEFFNEDKIINSINELLELGVKPIFEEEEVSKSLFSDKTVVVTGSLENYTRT 612

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +E +  +GA VS  +S+KTD ++ G   GSK +KA +LGVKI+NEE+F  +L +
Sbjct: 613 TIKEKLQSVGAKVSGSVSKKTDYVLAGKEAGSKYDKALELGVKIINEEEFEKMLSK 668


>gi|300709542|ref|YP_003735356.1| NAD-dependent DNA ligase LigA [Halalkalicoccus jeotgali B3]
 gi|299123225|gb|ADJ13564.1| NAD-dependent DNA ligase LigA [Halalkalicoccus jeotgali B3]
          Length = 703

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 220/727 (30%), Positives = 354/727 (48%), Gaps = 53/727 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           L PI+ L  ++A +E   L + I +HD  YY  + P I D  YD L +R   I  +F   
Sbjct: 17  LTPIDEL--DEAEREARRLREAIRHHDRRYYVENDPEIADRTYDTLFQRLVDIEESF--- 71

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              + P+ P  ++GGE    L  V H  P LS+++  +  D+R+F  R+ R         
Sbjct: 72  -GLQIPDSPTRRVGGEPVEELETVEHVAPMLSIQQSGDAADVREFAERMDREIG-----E 125

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + +T EPK DG  I + Y++G F  A  RG+G  G+DVSA +R I +IP+ L    P+ +
Sbjct: 126 VTYTCEPKFDGVSIEVVYDEGVFERAVTRGNGREGDDVSANVRTIRSIPQRLRGEYPDFL 185

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245
            VRGE+++ ++ F A N E +  G +P+ANPRNA +G +R+L+PT               
Sbjct: 186 AVRGEIFMPRDAFQAYNRERVERGDEPFANPRNATAGTIRQLDPTVTAERPLDCFFYDIL 245

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            +       +E L  +   G   N+    A      ++Y + +   R  L Y+IDG+V K
Sbjct: 246 DASEGIATHWEELDALESYGLQTNDRAELAADIDEAIAYRDRLVEDREGLNYEIDGVVIK 305

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VDE +  ++LG  +R  RW  ++KF  +   T + D+ +Q+GRTG LTPVA L+PV++GG
Sbjct: 306 VDEKAACEELGTTSRHYRWAFAYKFPARAGETAIQDVALQVGRTGRLTPVALLDPVDVGG 365

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ A+LHN   I+            +++ VGD V V+RAG+VIP V +++       +
Sbjct: 366 VTVSRASLHNPAEIE-----------EKEVNVGDVVRVERAGDVIPYVDEVVEKR---SS 411

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
             F FP+ CP+C S +         +      CTGGLAC AQ    ++++ S    +IEG
Sbjct: 412 GYFEFPATCPVCDSAI--------ERDGPIAFCTGGLACPAQLRRSVEYYASDSGLDIEG 463

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG +++D   ++          AD++ L+R           + G+G  S  NL   +   
Sbjct: 464 LGGERVDQLLEA---GLVEESVADLYRLERADLV------ELEGWGQKSAENLLAELEAS 514

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++  L  F+ ++GI HVG   AR LA  +                       L  V  +G
Sbjct: 515 KSPPLFAFLAAIGIPHVGRATARELAGAFGDLDGLMDASE----------DELREVDEIG 564

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +++A+ I +F+ +  N   +  L +         ++     +    +VFTG+L    R +
Sbjct: 565 EVVAREIRDFFDSEGNRRVLRELREAGVEPERAEDRESGDTLSGLTVVFTGSLPDRTRSE 624

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           AQ  +   G  V+  +S  TD ++VG+NPG SK E A   GV  +  E+F  L+ +    
Sbjct: 625 AQGLIEGAGGSVTGSVSGNTDYLVVGENPGSSKREDAADEGVPELTPEEFEALVDESEEA 684

Query: 725 LRIHDDD 731
            R    +
Sbjct: 685 DRQEQQE 691


>gi|262037707|ref|ZP_06011149.1| DNA ligase (NAD(+)) [Leptotrichia goodfellowii F0264]
 gi|261748179|gb|EEY35576.1| DNA ligase (NAD(+)) [Leptotrichia goodfellowii F0264]
          Length = 697

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 217/718 (30%), Positives = 366/718 (50%), Gaps = 60/718 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG----- 73
           +E   L ++I  ++  YY   +P+I D EYD L ++   I    P+L             
Sbjct: 16  EEYKKLREDIERYNRYYYDEDRPLISDKEYDDLIKKLQKIEEKNPELKNIYTVFSKDNSD 75

Query: 74  -----------PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
                      P  KIGG  +    KV HS+P LSL   +NI ++  F  R  +      
Sbjct: 76  ISDIEENPEITPTEKIGGTASEKFSKVVHSVPMLSLSNTYNISEIEDFDQRARKITGL-- 133

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
           D  + + LE K+DG  I++ YEKG F  A  RGDG  GEDV+  +R I ++P+ L  +I 
Sbjct: 134 DKKLEYILELKLDGLSISLIYEKGMFKQAITRGDGQIGEDVTENVREISSVPKKLKDSI- 192

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVH 241
             +EVRGE+ +  ++F  +N+     G   +ANPRNAA+G +R+L+ +    R L+ +++
Sbjct: 193 -DVEVRGEIVLPISNFNKVNEIREEAGEDVFANPRNAAAGTIRQLDSSIVKDRGLDCYLY 251

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
            L        K   E ++ ++ LGF   +   +   F  +     +    R  L Y+ DG
Sbjct: 252 YLVNPERYEIKTHLESMEFIKKLGFKTTDIFEKYTDFKELEKSIEKWHDEREKLDYETDG 311

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           LV KV++FS   +LG   +SPRW I++KF  +Q  T+LLD+  Q+GRTG++TPVA LEPV
Sbjct: 312 LVIKVNDFSYYNELGYTTKSPRWAIAYKFPAEQVKTKLLDVTFQVGRTGVITPVAELEPV 371

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+++  A+LHN D I+            ++I++GD V++++A E+IP+VV+++  +R
Sbjct: 372 TLSGSVVKRASLHNFDEIER-----------KEIKIGDNVIIEKAAEIIPQVVNVVFEDR 420

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               +    P+ CP+C S +V++      K            C  +    +++FVSRDA 
Sbjct: 421 TGKEREIEKPTNCPVCGSELVKEEGQVALK-------CLNPVCPEKVKREIEYFVSRDAM 473

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI GLG++ ++ F +       I+   DI++L+  ++    ++EN+   G  SV NL ++
Sbjct: 474 NISGLGEKIVEKFIE----LGKIKTVVDIYSLKDYRE----ELENLEKMGKKSVDNLINN 525

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I + +N    + ++SLGI  VG   A  L K + + +N            N +   L+++
Sbjct: 526 IEESKNRGFNKVLYSLGIPFVGKFTANLLVKNFKNIENL----------KNSEIEELLQI 575

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTL 658
             VG+ +A ++  +  N  N   +  L               +   + I+ K  + TG L
Sbjct: 576 KGVGEKVAISVHNYLNNEDNWGKINDLKGRGLNFSLENAEEIEIEDNPIKGKNFLATGKL 635

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +K +R + +E +   G    + +S+  D +I G+  GSKLEKA++L V+++ EE+F  
Sbjct: 636 EKYKREEIKEIILSKGGNYLSGVSKNLDFLIAGEKAGSKLEKAEKLNVRVLTEEEFER 693


>gi|152990877|ref|YP_001356599.1| NAD-dependent DNA ligase LigA [Nitratiruptor sp. SB155-2]
 gi|166216219|sp|A6Q433|DNLJ_NITSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|151422738|dbj|BAF70242.1| DNA ligase, NAD-dependent [Nitratiruptor sp. SB155-2]
          Length = 660

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 221/708 (31%), Positives = 352/708 (49%), Gaps = 56/708 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E     +++      YY    P + D  YD L R  +    A PD     DP  P  +I
Sbjct: 6   QEYKEAVEKLKRWAYAYYVLDNPEVPDEVYDKLYREVEEYEKAHPDQI---DPTSPTQRI 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G E      K+ H     S+E ++N  ++ +++ R+Y+   +KD   + F +EPK DG  
Sbjct: 63  GAEPAKEFKKIKHLSKMWSMEDVFNQREMHEWLERVYKNAGRKD---LQFYIEPKFDGAS 119

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + YE G    AA RGDG  GEDV+A  + IP+IP  L ++   +IE+RGEV I K+DF
Sbjct: 120 LNLIYENGLLKSAATRGDGEVGEDVTANAKTIPSIP--LGIDYKGLIEIRGEVVIRKDDF 177

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
             LN E    G   +ANPRNAA+G LR+L+P     R L F+   +G  + +  K Q+E 
Sbjct: 178 EKLNHERALKGESTFANPRNAAAGSLRQLDPKVTAQRKLYFYPWDIGY-NTLNFKYQHEK 236

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           +  +   GF              I   Y E    R  LP  +DG+V KVDE +L + LG 
Sbjct: 237 MDFVYQQGFIKPFKRAICENEEEIQQLYEEFSKERDKLPVMLDGMVVKVDEIALHEILGY 296

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             + PRWM+++KF   +  TR++DI  Q+GRTG++TPVA LEPV I G ++  ATLHN  
Sbjct: 297 TVKYPRWMVAYKFPAVEKMTRIIDIVPQVGRTGVITPVAILEPVEIEGVVVERATLHNYA 356

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +DIR+GD V+V R+G+VIP+V  ++   R    +    P  CP+C
Sbjct: 357 EIER-----------KDIRIGDMVIVIRSGDVIPEVTKVLTQYRTGKEKKVERPKVCPVC 405

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
              V+ +                 L+C A+ +  + +F S+   +I GLG+  +   ++ 
Sbjct: 406 GQPVLDEG---------ILIKCQNLSCPARVVNSIIYFASKQCLDISGLGEATVKLLYEK 456

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 ++   D+F L++        +  + GF +    NL D+    + +   RF+ +L
Sbjct: 457 ----GLVKDVVDLFKLKKED------LLRLPGFAEKKAQNLIDATQSVKGVECWRFVNAL 506

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI H+G   ++ L + +             +         L  +   G  + ++I EF  
Sbjct: 507 GIEHIGEVASKKLCEKFG------------LDWYKAPKEKLYEIEGFGPEMVRSIEEF-- 552

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
              N   +E L++ + P+  + E+ V +S + +K +V TG + K+ R K +E + + GA 
Sbjct: 553 VEVNKEKIEKLIELLQPTEPKKEEEVENSPLAHKTVVLTGEM-KLPRSKIKELLERAGAH 611

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           V+  +S  TD +  G+NPGSK +KAQQLGV ++ EE+   LL++    
Sbjct: 612 VTNSVSHHTDYVFYGENPGSKFQKAQQLGVPLLPEEKMWELLKEAGIE 659


>gi|237738042|ref|ZP_04568523.1| NAD-dependent DNA ligase [Fusobacterium mortiferum ATCC 9817]
 gi|229419922|gb|EEO34969.1| NAD-dependent DNA ligase [Fusobacterium mortiferum ATCC 9817]
          Length = 663

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 213/705 (30%), Positives = 347/705 (49%), Gaps = 50/705 (7%)

Query: 25  EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84
            ++I  + D YY  ++ +I D E+D L      +   +P+       N P   +G     
Sbjct: 2   REKIKKYSDYYYTNNESLISDVEFDKLLVELKELEEKYPEYKEK---NSPTEIVGATSLK 58

Query: 85  --SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
                KV H  P LSL   +N  D+  FI R+ +   ++ +  + + LE K+DG  ++I+
Sbjct: 59  ETKFQKVAHKKPMLSLSNSYNEGDISDFIERVKKLLPEEKN--LAYALELKLDGLSLSIQ 116

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           YE+GK V A  RGDG  GEDV+  I  I +IP++L   +   IE+RGEV +  + F  LN
Sbjct: 117 YEEGKLVRAVTRGDGTVGEDVTENILEIESIPKILKEKVS--IEIRGEVVLPLSKFEELN 174

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQKM 261
            + +  G + +ANPRNAA+G LR+L+ + I    L+ + + L        K   E ++ +
Sbjct: 175 KKRMENGEEVFANPRNAAAGTLRQLDSSIIKERGLDAYFYFLVDAQNYGVKTHSESIEYL 234

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             LG               ++S        R +L Y+ DG+V KVD   L  +LG   +S
Sbjct: 235 AKLGIKTTGVCEVLKNSSELISRIEYWGEKRESLDYETDGMVIKVDNIELWDKLGNTTKS 294

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I+ KF  KQ +T++L +  Q+GRTG +TPVA LE V + G+ +  A+LHN   I+ 
Sbjct: 295 PRWAIAFKFPAKQVTTKILGVTWQVGRTGKVTPVAELEEVELSGSRVKRASLHNYQEIER 354

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR+GD V +++A E+IP+VV  +   R  +      P+ CPIC ++V
Sbjct: 355 -----------KDIRIGDSVFIEKAAEIIPQVVKAVKELRDGNEIIIKEPTHCPICNTKV 403

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            R+      +          ++C  +    L +FVSRDA NI G G + ++   +     
Sbjct: 404 EREEGQVDIR-------CPNISCPGKIEGELIYFVSRDAMNIAGFGSKIVENMLR----L 452

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             I+   DI+ L+  ++    ++E +   G  SV NL  +I   +     + + +LGI  
Sbjct: 453 GFIKNIVDIYELKNHRE----ELEKLEKMGKKSVDNLLTAIENSKTREYSKVLCALGIPF 508

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG   A+ LA    +               +     L+ +  +GD +AQAI +F+++   
Sbjct: 509 VGKTSAKLLADSSGNIDKLM----------SMSVEELMEIEGIGDKMAQAIFDFFRDEEK 558

Query: 622 ICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
              +E L       I   ++           K  +FTGTLQ   R++ +E + +LG    
Sbjct: 559 KKLIEGLKAHGLTFIQERKEELPAEEKVFTGKTFLFTGTLQNFTRNEIKEEIEKLGGKNL 618

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQYN 722
           + +S+  D +IVG+  GSKL+KAQ+LG VKI+ EE+F+ +  + +
Sbjct: 619 SAVSKNLDYLIVGEKAGSKLKKAQELGTVKIITEEEFMKICGKKS 663


>gi|296273134|ref|YP_003655765.1| DNA ligase, NAD-dependent [Arcobacter nitrofigilis DSM 7299]
 gi|296097308|gb|ADG93258.1| DNA ligase, NAD-dependent [Arcobacter nitrofigilis DSM 7299]
          Length = 648

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 210/702 (29%), Positives = 357/702 (50%), Gaps = 57/702 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + E +     +      YY    P   D EYD L R C A     P L+    PN P  +
Sbjct: 3   QNEYNEKINILISWAIAYYVEDNPQASDEEYDKLSRECLAYEQENPSLSH---PNSPNKR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K  H     S E ++N  +L  +I R  +      + ++ F  EPK DG 
Sbjct: 60  VGGFVLEGFEKAAHLSRMWSQEDVFNTVELEDWIKRAQKV-----NTNLEFYCEPKFDGA 114

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G    A  RGDG  GEDV+  ++ I +IP  +      +IE+RGE+ I K D
Sbjct: 115 SLNLIYENGVLKQAITRGDGSIGEDVTNNVKTIHSIPLQIKEQS--LIEIRGEIVIKKAD 172

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N+E    G + +ANPRNAA+G LR+L+PT    R L F V G+G+   +      E
Sbjct: 173 FEKINEERAKNGEQLFANPRNAAAGSLRQLDPTVTAKRKLFFNVWGIGQ-HSLDFTKHSE 231

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           M++ +  LGF       +  T  GI   Y+++ + R+++   +DG+V K+++   Q++LG
Sbjct: 232 MMEYVYSLGFVHPPMTTKTTTVEGIEELYHKIIASRNSITMMLDGMVIKINDIETQEELG 291

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + PRW  ++KF   + +T + DI  Q+GRTG++TPVA +EP  I G+ +  A+LHN 
Sbjct: 292 YTVKFPRWSCAYKFPAVEKTTTIKDIIQQVGRTGVITPVAVVEPTLIDGSTVERASLHNY 351

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+R+ D+V++ ++G++IPK+  + V  R    +  + P+ CP 
Sbjct: 352 DEIARL-----------DLRINDQVIIIKSGDIIPKITKVFVERRDGTQEKITRPTLCPK 400

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S ++ +                 L C A  +  + +F S++  NI+GLG + ++   +
Sbjct: 401 CRSELLDEGTLIK---------CQNLDCPAIIVNSIIYFASKNCMNIDGLGNKIVETLVR 451

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     I    D+++L+          EN+ GF +  + NL ++I K +  SL R I +
Sbjct: 452 EKK----IYDILDLYSLKYEDL------ENLEGFKEKKINNLLNAIEKTKANSLHRVINA 501

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   ++ +   +             +   N D+ SL+ +  +G+ +A + VEF 
Sbjct: 502 LGIEHIGEVASKQICLEFG------------LDVVNIDFDSLVALDGIGEQMANSFVEFM 549

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +   N   V  L+  ++P++    +   +  + K +V TGT+  + R + ++ +  LGA 
Sbjct: 550 RV--NEELVSKLIATINPTVEEKIEVSENAFKGKTVVITGTMS-VSRGEVKKQLEALGAK 606

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           VS+ +S+KTD +I G++ GSK +KA +L VK +NEE+   ++
Sbjct: 607 VSSSVSKKTDYVIYGEDAGSKYDKAIELNVKTINEEEMNNMI 648


>gi|82523684|emb|CAI78466.1| NAD-dependent DNA ligase [uncultured candidate division WS3
           bacterium]
          Length = 667

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 228/704 (32%), Positives = 353/704 (50%), Gaps = 46/704 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           AR  ++ L + I +HD  YY  + P I D EYDAL     A+    P+L  +   + P  
Sbjct: 7   ARARVAELRELIRHHDRKYYVDAAPEIADGEYDALMSELAALEREHPELVTA---DSPTR 63

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++ G  +     V H++P LSLE  ++ E+L  F  R+ +         + + +EPK+DG
Sbjct: 64  RVAGAPSDGFSTVEHAVPMLSLENTYSPEELVAFDARVRKGL---PGEPVEYVVEPKLDG 120

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISK 195
             I++RY +G    A  RGDG  G+DV+A +R I +IP  LS    P  +EVRGEV++ +
Sbjct: 121 VSISLRYVEGSLDVAVTRGDGERGDDVTANVRTIRSIPSALSGRRAPATVEVRGEVFMPR 180

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAKGQ 254
           + F  LN   I     P+ NPRNAA+G L+  +P++  +       + +   +      Q
Sbjct: 181 SGFEELNGRRIEAEEAPFVNPRNAAAGSLKLRDPSEAAKRPLTAIFYQVAGPAAARIATQ 240

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E ++ M   GFPV+  V  A      V         R  L YDIDG V KV+    Q +
Sbjct: 241 WEAIELMGDWGFPVSPDVALARDVDAAVEACLAWDERRGGLDYDIDGTVVKVNSLEQQAR 300

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+SPRW I++KF      T +L I++Q+GRTG LTPVA LEPV + G+ ++ ATLH
Sbjct: 301 LGSTAKSPRWGIAYKFPAVSVRTVVLGIEVQVGRTGKLTPVAVLEPVFVSGSTVSRATLH 360

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N+D I+ L           D+RVGD V +++ GEVIPKV  ++ + R    + F  P+ C
Sbjct: 361 NQDEIERL-----------DVRVGDTVEIEKGGEVIPKVARVVRSMRKGRPRRFRMPATC 409

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C   VVR       +        G  +C  Q   R++HF SR A +I GLG   +   
Sbjct: 410 PACGEPVVRPEGEVDAR-------CGNESCPGQAAGRIQHFASRGAMDIRGLGSALVATL 462

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    +    D++ L          +  +   G+ S  NL   + + ++    R +
Sbjct: 463 VAE----GLVSDYGDLYGLDAE------SLAALDRMGERSAENLLAELEESKDRPFARVL 512

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             LGIRHVGA  A+ LA  +   +  A      +A   +          +G +IA +I  
Sbjct: 513 HGLGIRHVGARAAQVLAARFTGMKELAAASEEELAETEE----------IGPVIAASIRS 562

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F ++PRN  A+  L        G      ++ +    +V TG+L+++ R +A E V + G
Sbjct: 563 FLESPRNKEALRKLETAGVNMRGGSTPGRATALAGLTVVLTGSLERMTREQAAEAVAEAG 622

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             VS+ +S KTD+++VG +PGSKL+KA +LG++ ++E +   +L
Sbjct: 623 GRVSSSVSSKTDLVVVGADPGSKLKKALELGIRTIDESELERML 666


>gi|225025741|ref|ZP_03714933.1| hypothetical protein EIKCOROL_02645 [Eikenella corrodens ATCC
           23834]
 gi|224941522|gb|EEG22731.1| hypothetical protein EIKCOROL_02645 [Eikenella corrodens ATCC
           23834]
          Length = 778

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 253/806 (31%), Positives = 381/806 (47%), Gaps = 131/806 (16%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   ++ + +L Q ++ +   YY    P + D+EYD L R  +A+    P       P  
Sbjct: 1   MSTPQQRIRTLVQTLNRYAHEYYTLDAPSVPDAEYDRLYRELEALEAEHPQF---RLPES 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI----------EDLRKFITRIYRFWQKKDD 123
           P  ++GG +      V H++P LSL   ++            +   F  R+ +       
Sbjct: 58  PTQRVGGAVLDGFETVVHAVPMLSLNNAFSPRDDETGAFDHAEFLAFDERVCKELGVA-- 115

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IP 182
             + +  EPK DG  +++ Y+ G  V AA RGDG +GE+V+  I+ +  IP  L     P
Sbjct: 116 -QVEYAAEPKFDGLAVSLLYQNGILVQAATRGDGTTGENVTENIKTVRNIPLRLHGEKQP 174

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
            ++EVRGEV + K DF ALN   +  G+KP+ANPRNAA+G LR+L+      R L+FF +
Sbjct: 175 ALLEVRGEVLMLKADFAALNQRQLEAGQKPFANPRNAAAGSLRQLDSKITAQRKLHFFAY 234

Query: 242 GLGK--TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYD 298
           G+ +    E   +   E L  +  +GF +  G   A T    V    E  +      PY+
Sbjct: 235 GIAQLSGVERLPESHMEELALLHEIGFSLPKGYFGAYTGAAAVLREYERLAEHRPRLPYE 294

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KV+  + Q+QLG  +R+PRW I+HKF  ++A T +  ID+Q+GRTG +TPVARL
Sbjct: 295 IDGMVVKVNSLAEQQQLGFVSRAPRWAIAHKFPAEEALTTVEAIDVQVGRTGAVTPVARL 354

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +++
Sbjct: 355 APVFVGGVTVTNATLHNQDEVAR-----------KDVRVGDTVVVRRAGDVIPEVVRVLL 403

Query: 419 NERHPD------------AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA 466
             R                +PF  P  CP+C S V R+         A  RCTGG+ C A
Sbjct: 404 ERRPMQPVDLLGEQMEPLHEPFRLPETCPVCGSAVEREAGE------AVARCTGGMLCQA 457

Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN 526
           Q+ + L HF SR A +I GLG +Q++        A  +   ADI+ L   +  +    ++
Sbjct: 458 QRAQGLIHFASRKAMDIAGLGDKQIEALV----AADVLHSFADIYRLDIAKLQTIKDGKS 513

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL---------------- 570
                     N+ DSI + R   L RF+F+LGIRHVG   A+ L                
Sbjct: 514 ---AATKWAQNILDSIAQSRTPPLARFLFALGIRHVGESTAKQLAAAFGNLDTVRRAPEP 570

Query: 571 ----------------AKYY------LSYQNFAQ------EINNIIAHNNDDWLS-LIRV 601
                           A Y+          +  Q         +     N      L R+
Sbjct: 571 ILACLPDIGSVVAHAIAHYFRQPAQQKMLDDLLQHVAPQAAAPSPQTRANAAPEQWLQRL 630

Query: 602 PLV--GDIIA----------------QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
           P +   +  A                QA+ + +QN R   A  ALL+E++       ++ 
Sbjct: 631 PNIKLSEKRAAELWQLAGSLHALQTDQALPQEWQNWRRQPAHAALLQEITAFTEALPESS 690

Query: 644 -----------SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
                      +  I  K  V TGTL  ++R +A   +   G  VS  +S+KTD ++ G+
Sbjct: 691 TDNVSGSLHPENHPIAGKTFVLTGTLPTLKRDQAAALIEAAGGKVSGSVSKKTDFVVAGE 750

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLL 718
             GSKLEKAQ LGV +++EE+ L +L
Sbjct: 751 AAGSKLEKAQALGVAVLSEEELLGML 776


>gi|42520616|ref|NP_966531.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|81652444|sp|Q73H01|DNLJ_WOLPM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|42410355|gb|AAS14465.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 662

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 267/697 (38%), Positives = 389/697 (55%), Gaps = 49/697 (7%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
             L+ +I+YH+  Y+Q +KP I D+EYD LK++   I             +     +G  
Sbjct: 9   EKLQDQINYHNVLYHQKNKPEISDAEYDELKKKLAEIEPE-----IYATQDS----VGAP 59

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
            +    KV H  P LSLE  ++ + + KF+++I RF  +   + I    EPKIDG   + 
Sbjct: 60  PDERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLIE---DKIEILCEPKIDGLSFSA 116

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
            YE G+FV AA RGDG  GEDV+  +  I   P+ L       +EVRGE+YIS +DFL L
Sbjct: 117 IYEDGRFVKAATRGDGFVGEDVTHNVATIKGFPKFLQGV-QGRLEVRGEIYISNSDFLKL 175

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
           N+         +ANPRNAA+G L++L+            +          K Q E+L K+
Sbjct: 176 NEN------DEFANPRNAAAGSLKQLDANITASRP--LRYFAYSLIGGAEKSQSEVLNKL 227

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             LGF VN      ++  G++ +YNE+ + R  L YDIDG+VYKV++  LQ +LG   ++
Sbjct: 228 EALGFCVNEHQSLTSSLDGMLKFYNEVYNCRYNLDYDIDGIVYKVNDLVLQNRLGNTHKA 287

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PR  +++KF+   A T+L  I IQ+GRTG+LTPVA L PVN+GG L++ A+LHN+D IK 
Sbjct: 288 PRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNVGGVLVSRASLHNQDEIKR 347

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR GD V +KRAG+VIP++V++  + R P+   F FP  CP C S+V
Sbjct: 348 -----------KDIREGDIVTIKRAGDVIPQIVEVSRDSRLPNTPEFVFPEVCPECGSKV 396

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            +          AA RC    AC AQ +E+LKHFVS+DAF+I GLG +Q++FF+      
Sbjct: 397 RQVEGE------AAVRCPEEFACKAQMIEKLKHFVSKDAFDIVGLGDKQIEFFYD----L 446

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             I+   DIFTL+ R       +E   G+G+ S+ NL +SI  RR I+L+RFIFSLGIR 
Sbjct: 447 GLIKQIHDIFTLEERL--DEFNLEEQSGWGEKSIANLLNSIQSRRVITLDRFIFSLGIRF 504

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           +G   A  LA YY+SY N+   +  +   N      L+ +  +G   A+++  F+    N
Sbjct: 505 IGQVAAELLADYYVSYNNWYNSMIELSLDNT----ELVGIDGIGKKGAESLESFFSKEHN 560

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           I  +  L   +         + S     K +VFTG L  + R +A+     LGA VS+ L
Sbjct: 561 IKMLNDLTACLQILPVSSNSSNSVLNN-KIIVFTGKLLAMSRGEAKVRAKTLGAKVSSHL 619

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           S KTD +I G+ PGSK +KA +LGV+I++E+Q+  ++
Sbjct: 620 SAKTDYLIAGEKPGSKYKKAVELGVEILDEDQWHKVI 656


>gi|157164612|ref|YP_001467146.1| NAD-dependent DNA ligase LigA [Campylobacter concisus 13826]
 gi|190359238|sp|A7ZED8|DNLJ_CAMC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|112801346|gb|EAT98690.1| DNA ligase, NAD-dependent [Campylobacter concisus 13826]
          Length = 647

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 208/701 (29%), Positives = 345/701 (49%), Gaps = 61/701 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E       ++     YY   +P+  D EYDAL     A   A P          P  +
Sbjct: 3   KQEYEKAVDTLNAWAKAYYDEDEPLASDEEYDALYHAVLAFEQANPSEISLF---SPTKR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG +     K +H     S+E I+++ +L  ++ R  +        ++ F  EPK DG 
Sbjct: 60  VGGGVKEGFSKASHIKRMWSMEDIFSLGELDAWLKRGEK-------ENLTFVAEPKFDGA 112

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G  V A  RGDG +GEDV+   R I ++P   S++   +IE+RGEV I K+D
Sbjct: 113 SLNLLYENGVLVRAITRGDGVTGEDVTQNARTISSVP--KSISYKGLIEIRGEVVIRKDD 170

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN E    G  P +NPRNAA+G LR+L+      R L F   G+G    +  K   E
Sbjct: 171 FELLNMERAKEGEAPLSNPRNAAAGSLRQLDSAVTAKRKLLFIPWGVG-EQSLGLKDHSE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +++ +R LGF  ++  +       + + YNE+ + R +    +DG+V +V++ +  +QLG
Sbjct: 230 VMKFVRDLGFERDDFFKI-LKKDELEAAYNELLANRDSKSVMMDGMVIRVNDLARCEQLG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M++ KF   +  TRL D+ +Q+GR+G++TPV  L+ VNI GA + +ATLHN 
Sbjct: 289 YTVKFPKFMVAFKFPAIEKVTRLKDVALQVGRSGVVTPVGVLDEVNIDGANVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L            +   D + + R+G+VIPK+  +  + R    Q    P FCP+
Sbjct: 349 DEIERL-----------GVMKNDYIGIIRSGDVIPKITKVFKDRRDGSEQAIERPKFCPV 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++ +                 L+C A+ +  + H+ S+   NI+GLG   ++  F 
Sbjct: 398 CGSHLLDEG---------VFVKCQNLSCRARVVGSIIHYASKKCLNIDGLGDAIVNLLFD 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I    DI+ L+     S      + GF +  V NL ++I   +   L RFI  
Sbjct: 449 K----GLIACIKDIYGLKFDDLMS------LEGFKEKKVNNLLNAIEASKGAELSRFITG 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG  H+G   A+ LA  +             +   +  +  L  +   G  +A ++++F 
Sbjct: 499 LGCEHIGEVAAKKLASSFG------------LDWLDASFEELTALEGFGVEMANSLIDF- 545

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
               N   + AL + V PS+    +++S+ +  K +V TGTL +  R + +  +   GA 
Sbjct: 546 -AEVNRDEILALSQIVQPSVT-QVQSISNALSGKTVVITGTLSR-PRDEIKAELESFGAK 602

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VS  +S+KTD ++ G+  GSKL+KA +LGV +++E ++  L
Sbjct: 603 VSGSVSKKTDFVLAGEEAGSKLDKANELGVLVIDESEYERL 643


>gi|47569950|ref|ZP_00240615.1| DNA ligase, NAD-dependent [Bacillus cereus G9241]
 gi|47553396|gb|EAL11782.1| DNA ligase, NAD-dependent [Bacillus cereus G9241]
          Length = 615

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 236/657 (35%), Positives = 365/657 (55%), Gaps = 49/657 (7%)

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ + 
Sbjct: 2   SEDSPSIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYI 58

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RG
Sbjct: 59  CELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARG 116

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248
           E Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E
Sbjct: 117 EAYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEE 176

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L  +  LGF  N   R   T   +++Y  E +  RS L Y+IDG+V KVD+
Sbjct: 177 KTIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRSHLDYEIDGIVIKVDD 236

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++
Sbjct: 237 VALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIV 296

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHNED I+            +DIR+GD V+VK+AG++IP+VV++I ++R  + + +
Sbjct: 297 RRASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEY 345

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG+
Sbjct: 346 HMPTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGE 398

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +   F     A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  
Sbjct: 399 RVITQLFD----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKEN 448

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SLER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +
Sbjct: 449 SLERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKM 498

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQR 663
           AQ++V ++ N   +  ++   +       +  K     NV S    K +V TG L+ + R
Sbjct: 499 AQSVVAYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 558

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 559 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 615


>gi|291519153|emb|CBK74374.1| DNA ligase, NAD-dependent [Butyrivibrio fibrisolvens 16/4]
          Length = 651

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 194/694 (27%), Positives = 330/694 (47%), Gaps = 52/694 (7%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN-LSLFKVTH 91
           + YY   +P I D EYD L  +  A     P+      P+ P  KIGG     +  KVTH
Sbjct: 2   NKYYNDDEPEITDFEYDQLMLQLKAAEKEHPEWV---TPDSPTQKIGGVAKREAGVKVTH 58

Query: 92  SIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG----- 146
            +P LS+E ++  E++ +++ ++             F++E KIDG  +T+RYEK      
Sbjct: 59  DVPMLSIEDVFTKEEVVEWVKKVK-----AVHPDARFSVEAKIDGLSMTLRYEKDTTGKL 113

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206
           K   A  RGDG  GEDV+     IP +         + +++RGEVY+S  DF   N++  
Sbjct: 114 KLKLAETRGDGIVGEDVTENALVIPDV-NRYLDLPYDNLQLRGEVYMSHEDFDRYNEDQE 172

Query: 207 AVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
             G K  ANPRN A+G LR+L+      R L  FV  + +  +       + L  +    
Sbjct: 173 LKGGKLAANPRNLAAGTLRQLDANITKQRGLKMFVFNVQQGPDELTVSHCKGLDILSEHK 232

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
            PV    R  +    I++  +E+   R    +DIDG V K+D+ + +      A+     
Sbjct: 233 VPVVYH-RICDNADEILNVIDEIGEKREEFEFDIDGAVVKIDQVAYRADFSTSAKYTNGH 291

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I++K+  ++  T+LLD+++ +GRTG + P A  EP+ + G  ++ ATLHN+D+I  L   
Sbjct: 292 IAYKYPPEEKETKLLDVELSVGRTGRVNPTAIFEPIRLCGTTVSRATLHNQDFIDEL--- 348

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                   +I +GD ++V ++GE+IPK+ ++  ++R      +  P+ CP C   V RD 
Sbjct: 349 --------NIGIGDTIVVYKSGEIIPKIKEVKQDKRPAGTTTYKIPNICPACGGPVSRDA 400

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
           +       A  +CT   +C AQ    + +FVSRDA +I G G+  +    +       I+
Sbjct: 401 D------TADMKCTNP-SCPAQLERHIINFVSRDAMDIRGFGEVYIIDLVRR----GYIK 449

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
             ADI++L+ ++     +        + +   L   I   +     +     GI +VG  
Sbjct: 450 DIADIYSLKDKRDELIEEGII---GKEKNTDKLLGVIESSKENDAVKLFTGFGIPNVGKA 506

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A++L   +   +   +               L++V  +G+I A++I ++  +P NI  +
Sbjct: 507 AAKALLGQFKDIEKIMELSE----------EELMQVNDIGEISAKSIYDYLHDPVNIDII 556

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
             L       +   ++  + ++     V TGTL  + R +AQE +   G   +  +S+KT
Sbjct: 557 GRLKAAGVNMVEEEKEGATDKLSGLTFVITGTLPTMGRKEAQELIELNGGKCAGSVSKKT 616

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             ++ G+  GSKL+KA  LGV +++EE  L L+ 
Sbjct: 617 SYLVAGEAAGSKLDKANSLGVTVLDEEGLLSLIN 650


>gi|313125027|ref|YP_004035291.1| DNA ligase, NAD-dependent [Halogeometricum borinquense DSM 11551]
 gi|312291392|gb|ADQ65852.1| DNA ligase, NAD-dependent [Halogeometricum borinquense DSM 11551]
          Length = 694

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 232/724 (32%), Positives = 355/724 (49%), Gaps = 54/724 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             P+E+LS E A +E   L + +  HD  YY  + P++ D  YDAL  R   +  AF   
Sbjct: 24  FEPVESLSAEAAEREARLLREAVREHDHRYYVAADPLVADRTYDALFNRLQELEDAFD-- 81

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              +D + P  ++GGE    L  V H  P LS+++     D+R F  R+           
Sbjct: 82  --LDDESSPTRRVGGEPLDELDTVEHVAPMLSIDQSVEAADVRDFDRRVREAVG-----E 134

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + +  EPK DG  + + YE G++V AA RGDG  G+DV+A +R I +IP  L  + P+ +
Sbjct: 135 VRYVCEPKFDGLSVEVVYEDGEYVRAATRGDGERGDDVTAQVRTIRSIPLRLRGDYPDFL 194

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245
            VRGEVY+ ++ F  LN E I    +P+ANPRNAA G LR+L+P+               
Sbjct: 195 TVRGEVYMPRDAFQELNRERIEADEEPFANPRNAAVGTLRQLDPSVTADRPLDCFFYDVL 254

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            +    + Q   L ++   G   N+ V       G ++Y +E+ + R  L Y+IDG V K
Sbjct: 255 DASDVPETQTATLSRLDSWGLRTNDRVESVADIDGAIAYRDELMAAREDLNYEIDGTVIK 314

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD    ++QLGE +RS RW  ++KF  +   T + D+ +Q+GRTG LTPVA L+PV++GG
Sbjct: 315 VDRRDQREQLGETSRSVRWAFAYKFPARSEVTTMTDVVVQVGRTGRLTPVALLDPVDVGG 374

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ A+LHN + I+ L            + +GD V +KRAG+VIP V +++        
Sbjct: 375 VTVSRASLHNPEEIERL-----------GVNIGDEVRIKRAGDVIPDVEEVVEKH---SE 420

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
             F FP  CP+C S V R+             CTGGL C AQ +  + H+  R A +IEG
Sbjct: 421 GTFDFPEECPVCGSPVNRE--------GPLAYCTGGLTCEAQLVRAVDHYAMRGALDIEG 472

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG ++++           I    D++ L+R       ++  + G+G  S  NL   I   
Sbjct: 473 LGGERVEQLVDE----GLIEGLPDLYRLERD------ELSELEGWGKTSADNLVTEIEAT 522

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++  L  F+  LGI  VG   AR+LA+ + S           +    D           G
Sbjct: 523 KSPELSSFLVGLGIPEVGGSTARNLARAFGSLDAVMDASVEELEEVEDV----------G 572

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
             +A+ I EF+    N  A+   ++ +       E     E++    VFTG+L  + R  
Sbjct: 573 PTVAEKIREFFDTESNRKAIAE-MRSLGVEPETAETAGGDELDGLTFVFTGSLA-VTRGD 630

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           AQE V   GA  ++ +S  TD +++GDNPG SK + A    V +++E++F  LL +    
Sbjct: 631 AQELVQAHGANATSSVSGNTDYLVIGDNPGQSKRDDAAANDVPVLDEDEFAELLAEKGIE 690

Query: 725 LRIH 728
               
Sbjct: 691 YPPE 694


>gi|222094064|ref|YP_002528121.1| nad-dependent DNA ligase liga [Bacillus cereus Q1]
 gi|221238119|gb|ACM10829.1| DNA ligase, NAD-dependent [Bacillus cereus Q1]
          Length = 615

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 233/657 (35%), Positives = 365/657 (55%), Gaps = 49/657 (7%)

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG +     KVTH  P LSL   +N  DLR F  R+    Q  DD ++ + 
Sbjct: 2   SEDSPSVRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYI 58

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
            E KIDG  +++ YEKG+F+  A RGDG +GED++  ++ I  IP  L+  +   +E RG
Sbjct: 59  CELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARG 116

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248
           E Y+ K  F+ LN+E    G   +ANPRNAA+G +R+L+P     R L+ FV+GL    E
Sbjct: 117 EAYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEE 176

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L  +  LGF  N   R   T   +++Y  E +  R  L Y+IDG+V KVD+
Sbjct: 177 KTILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDD 236

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ+ LG  A+SPRW I++KF  ++  TRL  I++ +GRTG++TP A LEPV + G ++
Sbjct: 237 VALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIV 296

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+LHNED I+            +DIR+GD V+VK+AG++IP+VV+++ ++R  + + +
Sbjct: 297 RRASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVLFDKRTGEEEEY 345

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP C+S +VR           A RC     C AQ  E L HFVSR+A NI+GLG+
Sbjct: 346 HMPTHCPACESELVRLEEE------VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGE 398

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +   F+    A  IR  AD+++L + Q         +  FG+ S TNL  +I   +  
Sbjct: 399 RVITQLFE----ADYIRTFADLYSLTKEQL------LQLERFGEKSATNLVQAIENSKEN 448

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SLER +F LGIRHVGA+ AR+ A+++ +     +               L  +  +G+ +
Sbjct: 449 SLERLLFGLGIRHVGAKAARTFAEHFETMDALVKATE----------EELKAINEIGEKM 498

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQR 663
           AQ++V ++ N   +  ++   +       +       +NV S    K +V TG L+ + R
Sbjct: 499 AQSVVAYFDNEDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGR 558

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +A++ +  LG  V+  +S+ TD+++ G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 559 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 615


>gi|331270357|ref|YP_004396849.1| DNA ligase [Clostridium botulinum BKT015925]
 gi|329126907|gb|AEB76852.1| DNA ligase, NAD-dependent [Clostridium botulinum BKT015925]
          Length = 663

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 204/713 (28%), Positives = 359/713 (50%), Gaps = 58/713 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  ++++  L  E++     YY    P + D +YD        +            P  
Sbjct: 1   MEGKKQQIYKLVDELNKLAYEYYVLDNPSVADKDYDKKYDELVQLEKQ----TGMMLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIF 127
           P  ++G  +     K TH     SL K  ++E+++ +  +  +   +           I 
Sbjct: 57  PTQRVGDMVLAKFEKYTHKGKLWSLGKAQSLEEVKDWHNKNIKAINEYNLKHEDKLPPIK 116

Query: 128 FTLEPKIDGTMITIRYEK-GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  I   Y+  G  V AA RG G  GED++A  + I T+P  L +N   +IE
Sbjct: 117 YIVTKKFDGLTINCTYDNEGILVTAATRGTGEIGEDITAQAKTIKTLP--LKINNNALIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245
           V GE  ++K  F   N       + P  N RN A+G LR LN  +   R L+ F + +G 
Sbjct: 175 VHGEAIMTKEAFEEYNKIA----QVPLKNLRNGAAGALRNLNIKETARRNLSAFFYDVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 +   EML+ ++  G P+++ V+  +T   I      ++ IR+ L YDIDG+V  
Sbjct: 231 NEGKPFETYSEMLKFIKEQGIPMDDYVKTCSTVEEIEEEIKYIEEIRNDLNYDIDGIVIA 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +D+   ++ +G   + P+W +++KF  ++A+T+L+D++  +GR+G +TP A LEPV IGG
Sbjct: 291 IDDMKSRELIGYTVKFPKWALAYKFEAQEATTKLIDVEWNVGRSGRVTPTAILEPVEIGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D I             + +++G  V ++R+ +VIP+++ ++ N    D 
Sbjct: 351 VTVKRATLNNMDDINR-----------KGVKLGSVVFLRRSNDVIPEIMGVVENS-TEDT 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 KEIKTPEVCPYCGSEIVQE--------GVHYFCENTLSCKPQLVKSIVHFGSREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++     F+  D    I+  +D++ +++       ++ N+  FG+    NL D+I K 
Sbjct: 451 FSEKTAGQLFEELD----IKSISDLYRIKKE------ELLNLQRFGEKKAQNLIDAIEKS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L  FI++LGI +VG + +  L K + + +N               +  LI V  +G
Sbjct: 501 KNCDLPSFIYALGIPNVGKKTSTDLCKKFKTLKNLKSAT----------FDDLISVEDIG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           DI+A++I+EF+++   + +++ LL+       + E+   +    K +V TG+L    R +
Sbjct: 551 DIVAESIMEFFKDDTILKSIDELLELGVNPEFQEEEIQENIFNGKTVVVTGSLNSFSRSE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +E +  LGA VS+ +S+KTD +IVG +PGSK EKA +L VKI++E++F  ++
Sbjct: 611 IKEKLQSLGAKVSSSVSKKTDYVIVGKDPGSKYEKAVELNVKIIDEDEFKNMI 663


>gi|228469580|ref|ZP_04054573.1| DNA ligase, NAD-dependent [Porphyromonas uenonis 60-3]
 gi|228308930|gb|EEK17605.1| DNA ligase, NAD-dependent [Porphyromonas uenonis 60-3]
          Length = 679

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 208/722 (28%), Positives = 341/722 (47%), Gaps = 58/722 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++      E+  L + I  H+  YY  + P I D++YDAL +R   +    P+ A   DP
Sbjct: 1   MTPNSTELEIEQLRKTIEQHNRAYYLDNAPTISDADYDALMQRLLTLEAEHPEFA---DP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  ++G + N +  +V H  P LSL   +N +++ +   R          + + +  E
Sbjct: 58  TSPSLRVGRDRNDAFVQVAHEQPMLSLSNTYNYDEIAEICKRTDTLL---ATDDVPWVAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV------LSLNIPEII 185
            K DG+ I++ YE+G    A  RGDG  G+DV+  +R I ++P                I
Sbjct: 115 MKYDGSSISLIYEEGVLARAVTRGDGTLGDDVTVNVRTIQSVPLRLHSIAGHPDYTRGRI 174

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244
           EVRGEV +   +F  LN E  A    P+ANPRNAA+G L+ LN      R L    + L 
Sbjct: 175 EVRGEVLLPFKEFERLNGERTAESEAPFANPRNAAAGTLKTLNSRIVAQRRLLCICYYLY 234

Query: 245 KTSEIF--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
              +        YE ++ +  +GF       +++    +  Y +E    R  LPY  DG+
Sbjct: 235 ALDDETRLPDSYYERMKLLEEMGFDTGVAPFKSSDLSALYHYIDEWDVQRGDLPYATDGI 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVD  + Q+ LG  A+SPRW  ++K+  + A   LL +D Q+GR+GI+TPVA +EPV 
Sbjct: 295 VLKVDSLTQQRVLGNTAKSPRWAFAYKYQPENARAELLSVDYQVGRSGIVTPVANVEPVL 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           I G ++  ATLHNE++IK L           D+   D V +++ GE+IPK+  +  + R 
Sbjct: 355 ISGTVVRRATLHNEEFIKSL-----------DLHYHDYVYIEKGGEIIPKITAVEPSLRR 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P+A+P   P  CP C + + +            + C    AC  Q + R++H+ +R A +
Sbjct: 404 PEAEPVRLPERCPACGAPLQQIDG------SVGYYCVNSYACPPQIMGRIEHYCTRRAAD 457

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I    +     F +       I    D++ L          +  +  F + S+ NL  SI
Sbjct: 458 INVGPETIDALFDR-----HLIENIDDLYKLTASD------LAQLPNFKEKSINNLLASI 506

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + +     R ++ +GIR VG   A++LA+++ S    AQ               L  +P
Sbjct: 507 EQSKGRPFARLLYGIGIRFVGEGTAKTLARHFQSIDRLAQAT----------AYELQALP 556

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTL 658
            VG  IA+ +V F+   RN   +  L +         E+         +E +++V +G+ 
Sbjct: 557 DVGPKIAEQVVYFFSLERNQQLIAELQRCGVRLEECAEEATDMPQSNRLEGERIVISGSF 616

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
            +  R + ++ + Q G      +S +T  +++G + G SK  KA+QLG+ ++ EE+FL  
Sbjct: 617 TQHSRDEYKQLIEQHGGTNVGSISSRTTFVLMGSDMGPSKRAKAEQLGIPLVTEEEFLAR 676

Query: 718 LQ 719
           L 
Sbjct: 677 LN 678


>gi|302874256|ref|YP_003842889.1| DNA ligase, NAD-dependent [Clostridium cellulovorans 743B]
 gi|307689480|ref|ZP_07631926.1| NAD-dependent DNA ligase LigA [Clostridium cellulovorans 743B]
 gi|302577113|gb|ADL51125.1| DNA ligase, NAD-dependent [Clostridium cellulovorans 743B]
          Length = 665

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 199/716 (27%), Positives = 358/716 (50%), Gaps = 60/716 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + I  ++K +  L ++++     YY    P I D EYD L      +      +      
Sbjct: 1   MEISDSKKRIEELIEQLNKFAYEYYALDNPSISDKEYDKLYDELTILEKETGYILSY--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW------QKKDDNS 125
             P  ++G  +     K  H     SL+K  + E++ ++  R  +               
Sbjct: 58  -SPTQRVGDGILSQFSKYIHKGRLWSLDKAQSFEEIIEWHNRNVKAVMQYNKENADKLPP 116

Query: 126 IFFTLEPKIDGTMITIRYEK-GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
           + + +  K DG  +   Y+  G  + AA RG G  GED++A  + I  +P  +  +   +
Sbjct: 117 LEYVITKKFDGLTLNCTYDNDGIMIKAATRGTGEIGEDITAQAKTIKALPLKV--DHKGL 174

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL 243
            E+ GE  ++K  F A N++          N RN A+G LR LN  +   R L+ F + +
Sbjct: 175 FEIHGEAIMTKEAFDAYNEKA----EVKLKNLRNGAAGALRNLNLKETAKRNLSAFFYDV 230

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G       +   +M++ +R   FP+++ ++ A     I +    + SIR+ L YDIDG+V
Sbjct: 231 GYNEGDPFESYIDMMKFIREKNFPIDDYMKIARDTEDIKNEIEYINSIRADLNYDIDGIV 290

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
             +++   +  LG   + P+W I++KF  ++ +T LLD++  +GR+G ++P A LEPV++
Sbjct: 291 IVINDMRTRAVLGYTIKFPKWAIAYKFEAEETTTELLDVEWNVGRSGRVSPTALLEPVDL 350

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG  +  ATL+N D IK            +++++G+RV V+R+ +VIP+++ +       
Sbjct: 351 GGVTVKRATLNNMDDIKR-----------KNVKIGNRVFVRRSNDVIPEIMGVAEEL--E 397

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +A+    PS CP C S ++         + A + C   L+C  Q ++ + HF SR+A NI
Sbjct: 398 NAREIIAPSNCPSCGSELML--------VGAHYFCENTLSCKPQMVKSIVHFGSREAMNI 449

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EG  ++  +  ++  D    ++  +D++ L++       ++ N+  FGD    NL D+I 
Sbjct: 450 EGFSEKTAEQLYEKVD----LKTLSDLYKLKKE------ELLNLEKFGDKKAQNLLDAIE 499

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           K +   L  FI++LGI +VG + A+ L K   S +   +            +  L+ +  
Sbjct: 500 KSKECELASFIYALGIPNVGKKTAKDLCKNLKSLEGIKKAT----------YEDLLAIED 549

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
           +G+I+A+ I+EF+ + + + +++ LL     PS      N  S   +K +V TGTL+   
Sbjct: 550 IGEIVAKCIIEFFSDEKILRSIDELLAVGVSPSYEETLVNDQSSFMDKTVVVTGTLKNFS 609

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R + ++ +  LGA VS  +S+KTD +I G+  GSK +KA  LG+KI++EE+FL ++
Sbjct: 610 RTEIKDKLEALGAKVSGTVSKKTDYVIAGEAAGSKYDKAISLGIKILSEEEFLAMI 665


>gi|223039682|ref|ZP_03609968.1| DNA ligase, NAD-dependent [Campylobacter rectus RM3267]
 gi|222879065|gb|EEF14160.1| DNA ligase, NAD-dependent [Campylobacter rectus RM3267]
          Length = 647

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 220/703 (31%), Positives = 343/703 (48%), Gaps = 60/703 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +KE       ++     YY    PI  D EYD L  +      A P          P  +
Sbjct: 3   KKEYLEAVDTLNAWAKAYYTDDAPIATDEEYDELYHKVLEFERANP---GDISMFSPTKR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE++    K  HS+   S+E I++ E+L  ++ R        D   + F L+PK DG 
Sbjct: 60  VGGEVSDGFVKARHSVRMWSMEDIFSFEELLAWLKR-------GDKEGLEFALQPKFDGA 112

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G  V A  RGDG +GEDV++  + I  IP  L +     IE+RGEV I+KND
Sbjct: 113 SLNLLYENGALVRAITRGDGITGEDVTSNAKVIKNIP--LQIAYNGRIEIRGEVVIAKND 170

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N      G    +NPRNAA+G LR+L+     +R L F   G G    +  +   +
Sbjct: 171 FDEINFARAQRGEPQLSNPRNAAAGSLRQLDSAVTASRRLRFKPWGYG-EQNLGLETYSQ 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           M+  +   GF      +   T   I   Y ++ + R + P+ +DGLV +V   +  ++LG
Sbjct: 230 MMDFIYSQGFEREEFFKICRTAEQIEEAYKQLVAQRDSKPFMMDGLVVRVQSIAASEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M+++KF   + +TRLLD+  Q+GR+G++TPV  LEPVNI GA + +ATLHN 
Sbjct: 290 YTEKFPKFMVAYKFPAIEKTTRLLDVAFQVGRSGVVTPVGVLEPVNIDGATVKSATLHNF 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L            ++ GD + + R+G+VIPK+  +    R     P   P  CP+
Sbjct: 350 DEIERL-----------GVQKGDFISIIRSGDVIPKITGVFKQRRDGSQMPIERPRECPV 398

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++ +                 L C A+ +  L HF S+   NI+GLG+  ++  F+
Sbjct: 399 CGSMLLDEG---------VFVKCQNLECKARVINSLIHFASKKCLNIDGLGEAIVNQLFE 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L  +   S      + GF D  + NL  +I   R  +L  FI S
Sbjct: 450 ----AGLVAKIADIYELTAQDLAS------LEGFKDKKIANLLGAIEASRTPALHSFIAS 499

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ +A+ Y                    +  +  +   G+ +A++  EF 
Sbjct: 500 LGIEHIGEVAAKKIAQIYP------------QNWRELSFGEVAAIEGFGEAMAESYAEFM 547

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q   N   ++ +L+ VSP    +E    S I  K  V TGTL K  R + +  +   GA 
Sbjct: 548 QV--NRQNLDEILRFVSPQAQIYETKQ-SAISGKTFVITGTLSK-SRDEFKRVLEANGAK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           VS  +S+KTD ++ GD  GSKL+KA++LGVK + E++   +++
Sbjct: 604 VSGSVSKKTDFVLYGDEAGSKLDKARELGVKAITEDELRRMIE 646


>gi|229819870|ref|YP_002881396.1| DNA ligase, NAD-dependent [Beutenbergia cavernae DSM 12333]
 gi|229565783|gb|ACQ79634.1| DNA ligase, NAD-dependent [Beutenbergia cavernae DSM 12333]
          Length = 782

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 216/783 (27%), Positives = 347/783 (44%), Gaps = 98/783 (12%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A    + L Q+++     YY    P + D+ +DAL    +A+  + P+L     P+ P 
Sbjct: 23  EAAHRWAELAQQVNDARFAYYVKDAPTLSDAAFDALLHELEALEESHPEL---RVPDSPT 79

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG  +     V H    LSL+  ++ E +  +  R+ R         + +  E KID
Sbjct: 80  QQVGGTFSTEFTAVEHVERMLSLDNAFSAEGVESWAQRVERDLDAAAAG-LHYLCELKID 138

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGEVY 192
           G  I + YE G+ V AA RGDG +GEDV+  +R I +IP VL  +    P  IE+RGEV+
Sbjct: 139 GLAIALLYEGGRLVRAATRGDGRTGEDVTLNVRTIASIPHVLGGDAASHPARIEIRGEVF 198

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF- 250
           +    F ALN   +  G+ P+ANPRNAA+G LR+ +P     R L  + HG+G       
Sbjct: 199 LPVEAFEALNSSQVEAGKSPFANPRNAAAGSLRQKDPRVTARRALGMYAHGIGALDWGDA 258

Query: 251 -----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                   Q ++ + +   G P +   R  +   G+          R  + ++IDG+V K
Sbjct: 259 PEASSITRQSQVYELLSSWGVPTSPHTRVVDDLAGVQEMIAYYGEHRHDVEHEIDGVVVK 318

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VDE +LQ++LG  +R+PRW I++K+  ++ +TRLLDI + +GRTG +TP   +EPV + G
Sbjct: 319 VDEVALQRRLGATSRAPRWAIAYKYPPEEVNTRLLDIRVSVGRTGRVTPYGVMEPVVVAG 378

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +  ATLHN   +K            + + +GD V++++AG+VIP++V  +V  R    
Sbjct: 379 STVEAATLHNASEVKR-----------KGVLIGDTVVLRKAGDVIPEIVGPVVALREGRE 427

Query: 426 ---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              + F  P  CP C + +         +     RC    +C AQ  ER+     R  F+
Sbjct: 428 SELREFVMPDVCPSCGTPLA-----PAKEGDVDIRCPNARSCPAQLSERVSALGGRGGFD 482

Query: 483 IEGLGKQQLDFFFKSED---------------------------------PAFSIRIPAD 509
           IE LG +        E                                   A    +  D
Sbjct: 483 IEALGWEAATALTDPERGRPVDASVYRPGADLTAEAPAALPDRQAPVLATEAGLFELTPD 542

Query: 510 I------FTLQRRQQTSTTKIENILGFGDV-----------SVTNLYDSINKRRNISLER 552
                  +   +R+  +T   E+   F              +   L+D +   +   L R
Sbjct: 543 DVANVRVWREIKRKGEATGFWEDRPFFFTKGTAKVPPKPTQTTQVLFDQLELAKTRPLWR 602

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            + +L IRHVG   AR+LA+ + S           +A              VG  IA A+
Sbjct: 603 VLVALSIRHVGPTAARALAQRFGSIDAIDAASEEELAAA----------DGVGPTIAAAV 652

Query: 613 VEFYQNP-----RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            E+  +P          V              +++V   +E   +V TG+L++  R  A+
Sbjct: 653 KEWLGDPEAPDNWRREIVRRWAAAGVRMADERDESVPRTLEGLTVVVTGSLERFTRDGAK 712

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727
           E V   G   +  +S+ TD ++VG+N GSK  KA++LG  I++E  F  LL +    +  
Sbjct: 713 EAVLARGGKAAGSVSKSTDFVVVGENAGSKETKARELGRPILDEAGFERLLAEGPDAVAE 772

Query: 728 HDD 730
             D
Sbjct: 773 SAD 775


>gi|225075650|ref|ZP_03718849.1| hypothetical protein NEIFLAOT_00666 [Neisseria flavescens
           NRL30031/H210]
 gi|224953072|gb|EEG34281.1| hypothetical protein NEIFLAOT_00666 [Neisseria flavescens
           NRL30031/H210]
          Length = 822

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 243/834 (29%), Positives = 379/834 (45%), Gaps = 170/834 (20%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQRIQYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H IP LSL   ++ +         ++  F  R+             +
Sbjct: 62  VGGEPLAGFNEVRHEIPMLSLTNAFSPQDENGVFDHTEMYAFDERVRGGLN---GEKPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187
            +EPK DG  I++ Y  G    AA RGDG +GEDV+  ++ +  IP  L     PE+IE+
Sbjct: 119 VIEPKFDGLAISLLYRDGVLTQAATRGDGTTGEDVTHNVKTVSNIPLRLHGENIPELIEI 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246
           RGEV + K DF ALN +    G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 179 RGEVLMLKADFAALNKKQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 238

Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304
                A+   + L   + LGF + +G          V  + E    +    PY+IDG+V 
Sbjct: 239 QGGFIAEEHLQELNYCKELGFSLPDGNFGCFKNIDEVLAFYEQMQQKRPTLPYEIDGMVV 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLAQQEKLGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 AQPFSF---------------------------PSFCPICQSRVVRDLNPKTGKLVAAHR 457
               S                            P+ CPIC+S + R+         A  R
Sbjct: 408 ETNISVSDGLQDDLFAETPSETRSEPLHKPYRLPTHCPICRSEIEREEGE------AVAR 461

Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ--- 514
           C+GG+ C AQ+++ L HF SR A +I+GLG++Q++     +     +R  AD++ L    
Sbjct: 462 CSGGMLCQAQRVQGLIHFASRKAMDIDGLGQKQIEQLVAQD----LVRHFADLYRLDIPT 517

Query: 515 -------------RRQQTSTTKIENILG-------------FGDVSVTNLYDSINKRRNI 548
                          ++ S ++IE+  G                    N+   I   +  
Sbjct: 518 LQKMKETADKASINEEEPSNSEIEDFEGETGNTLLAKNNKKQPTKWAENILAGIEASKTP 577

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------------------- 589
            L RF+F+LGIRHVG   A++LA+ + + ++       I+A                   
Sbjct: 578 ELARFLFALGIRHVGERTAKTLAQAFGTLEHVRHAPEPILACLPDIGTVVARSIAHFFAQ 637

Query: 590 -HNNDDWLSLIRV--------------------------PL--VGDIIAQAIVE------ 614
                    L+ V                          P   + +  A A+ E      
Sbjct: 638 EAQQAMIDELLAVGIAPQSQAVTIPPLRHAEPQRWIARLPDFKISETKALALWELAGQSI 697

Query: 615 ---------------FYQNPRNICAVEALLKEVSPSIGRHEKN-----VSSEIENKKLVF 654
                          +   P+N   +E +    + ++ + +       ++  I  K  V 
Sbjct: 698 EGLQTDKALPADWQTWRSKPQNAALLENMKTFFAQTLSKLQDETISDGINEAIAGKTFVL 757

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
           TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKAQ LGV +
Sbjct: 758 TGTLPTLKRDQAQAMIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKAQALGVAV 811


>gi|257466592|ref|ZP_05630903.1| NAD-dependent DNA ligase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917747|ref|ZP_07913987.1| DNA ligase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691622|gb|EFS28457.1| DNA ligase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 676

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 216/715 (30%), Positives = 355/715 (49%), Gaps = 50/715 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S ++       L++++  + D YY  ++ +I D EYD L +  + +        + ++ 
Sbjct: 2   ISKKEKENRREELQKKLQRYSDAYYSQNESLISDYEYDMLLKELENLEAE----LQIQNK 57

Query: 72  NGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           +     +G  +      K+ H  P LSL   + I ++  F+ R  +     D+  +    
Sbjct: 58  DSITQTVGSSLKNSKFQKIAHKTPMLSLSNTYQIGEIEDFLLRAKKNLNMTDNLEVEM-- 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  I+I YEKGK V A  RGDG  GEDV+  +  I +IP  LS      IE+RGE
Sbjct: 116 EIKLDGLSISIIYEKGKLVRAVTRGDGIVGEDVTENVLQIESIPHELSEAF--DIEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEI 249
           + +  ++F  LN   I  G + +ANPRNAASG LR+L+P     R+L  + + +    + 
Sbjct: 174 IVLPFSEFENLNKIRIEKGEEVFANPRNAASGTLRQLDPKIVKERHLAAYFYFIVNAEQY 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q + +  +  L  P        +    + +        R  L Y+ DGLV K++  
Sbjct: 234 GIHSQKDSIAFLEKLSLPTTGICEIFHNLSDLENRIEHWSKERENLAYETDGLVLKINNI 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SL ++LG   +SPRW +++KF  KQ +T+LLDI  Q+GRTG +TPVA LE V + G+ + 
Sbjct: 294 SLWEKLGSTGKSPRWAVAYKFPAKQVTTKLLDITWQVGRTGKITPVAELEEVELSGSRVK 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN D I             +DIR+GD V +++A E+IP+VV  +  +R  + +   
Sbjct: 354 RASLHNYDEIVR-----------KDIRIGDTVFIEKAAEIIPQVVKSVKQDRTGEEKEIE 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CPIC S + R+      K            C  +    +++FVSRD  NI GLG +
Sbjct: 403 APAHCPICNSVLEREQGLVDLK-------CINKHCPGKIQGEMEYFVSRDGMNISGLGGK 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+ F         +   +DI+ L+ R++    ++E +   G  S+ NL +SI + +  S
Sbjct: 456 ILEKFLD----LHYLEDVSDIYYLKERKE----ELEQLDKMGKKSIENLLNSIEESKKTS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ++ +++LGI  VG   A+ LAK   +                     L ++  +G+ +A
Sbjct: 508 YDKVLYALGIPFVGKVAAKLLAKESKNIFKLQTMTE----------EELQQIEGIGEKMA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++IV+F+QN      ++ L+      +   G      +   + K  + TGTL K  R + 
Sbjct: 558 RSIVDFFQNEVKKQLIQNLIDIGLCFTLKDGVEASTEAKIWQGKTFLVTGTLSKYTRAEL 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720
           QE + + G    + +++K D +IVG+  GSKLEKA+ LG V I+ EE FL L ++
Sbjct: 618 QEDIEKSGGTNLSSVTKKLDYLIVGEKAGSKLEKAKALGSVTILTEEDFLALKEK 672


>gi|226950696|ref|YP_002805787.1| DNA ligase, NAD-dependent [Clostridium botulinum A2 str. Kyoto]
 gi|254781293|sp|C1FLS8|DNLJ_CLOBJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226842063|gb|ACO84729.1| DNA ligase, NAD-dependent [Clostridium botulinum A2 str. Kyoto]
          Length = 664

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 205/714 (28%), Positives = 357/714 (50%), Gaps = 58/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++  L +E++ +   YY    P I D EYD        +            P  
Sbjct: 1   MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK----TEVTLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127
           P  ++G ++     K TH     SL+K  N+E L ++  R  +  ++ +         + 
Sbjct: 57  PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116

Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  +  N   +IE
Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNNH--VIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245
           V GE  ++K  F   N       + P  N RN A+G LR L+  +   R L+ F + +G 
Sbjct: 175 VHGEAIMTKTAFEEYNKAA----QVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EM+  ++ +G P +  +++      +      ++SIR  L YDIDG V  
Sbjct: 231 NEGPEFKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIV 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   ++ LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG
Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D IK            +++++G +VLV+R+ +VIP+++ ++      ++
Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVVEES-LEES 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 EEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+  D    I+  AD++ +++ +  +      +  F D    NL D+I   
Sbjct: 451 FSEKTAEQLFEKLD----IKSIADLYKIKKEELLT------LEKFKDKKSQNLIDAIQNS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L  FI++LGI +VG + A  L   + + ++            N     L+ VP VG
Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESI----------KNTTIEQLVEVPDVG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+A++I +F+++ + I  +E LL          E+   +    K +V TG+L    R +
Sbjct: 551 EIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMGKTIVVTGSLNNYSRGE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ +  LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F   ++
Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664


>gi|187776813|ref|ZP_02993286.1| hypothetical protein CLOSPO_00329 [Clostridium sporogenes ATCC
           15579]
 gi|187775472|gb|EDU39274.1| hypothetical protein CLOSPO_00329 [Clostridium sporogenes ATCC
           15579]
          Length = 664

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 205/714 (28%), Positives = 352/714 (49%), Gaps = 58/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++  L +E++ H   YY      I D EYD        +        +   P  
Sbjct: 1   MDNKLEKMKELVEELNQHAYEYYVLDNSSISDKEYDLKYDELVVLEKE----TKVTLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR------FWQKKDDNSIF 127
           P  ++G  +     K TH     SL+K  N+  L ++  R  +         +     + 
Sbjct: 57  PTQRVGDNILGEFGKYTHKGRLWSLDKAQNMSQLTEWHNRNLKTVEQYNSINEDKLPELR 116

Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  +   Y E G  V  A RG G  GED++A I+ I T+P  +  N   +IE
Sbjct: 117 YIVTKKFDGLTVNCTYDENGILVKGASRGTGIIGEDITAQIKTIKTVPLKIKNNH--VIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245
           V GE  ++K  F   N       + P  N RN A+G LR L+  +   R L+ F + +G 
Sbjct: 175 VHGEAILTKTAFEEYNKTA----QVPLKNLRNGAAGALRNLDIKETSKRNLSAFFYDVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EM++ ++ +G P +  +++      +      ++SIR  L YDIDG V  
Sbjct: 231 NEGPEFKSYTEMMKFIKNMGLPQDKYIKECTNMEEVEKEIQYIESIREELDYDIDGAVIV 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   +K LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG
Sbjct: 291 VDDIKTRKVLGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D I+            +++++G +VLV+R+ +VIP+++ ++      ++
Sbjct: 351 VTVKRATLNNMDDIQR-----------KNVKLGAKVLVRRSNDVIPEIMGVVEES-LEES 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 KEIEAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+  D    I+  AD++ +++ +  +      +  FGD    NL D+I   
Sbjct: 451 FSEKTAEQLFEKLD----IKSIADLYKIKKEELLT------LDKFGDKKSQNLIDAIENS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L  FI++LGI +VG + A  L   + + +N                  L+ VP VG
Sbjct: 501 KNCDLPSFIYALGIPNVGKKTANDLVMKFKTLENIESAT----------IEELVEVPDVG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+A+++ +F+++ + I  +E LL          E    +    K +V TG+L    R +
Sbjct: 551 EIVAKSVYDFFKDEKIINNIEELLNLGVKPYYEEEIIDENPFMGKTIVVTGSLNNYSRGE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ +  LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F   ++
Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAVELGVKVINEEEFSNKIK 664


>gi|256420112|ref|YP_003120765.1| DNA ligase, NAD-dependent [Chitinophaga pinensis DSM 2588]
 gi|256035020|gb|ACU58564.1| DNA ligase, NAD-dependent [Chitinophaga pinensis DSM 2588]
          Length = 709

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 232/720 (32%), Positives = 370/720 (51%), Gaps = 57/720 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +I+     L +L + I Y+D  YY  S P++ D EYD L      +  A PD       +
Sbjct: 26  TIQDLDSTLENLRRVIIYNDWRYYVQSDPVLSDYEYDQLFAWLKELETANPDKV---SAD 82

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++   ++ +   V H +P LSLE  +N +DL  +  +        D   I + +EP
Sbjct: 83  SPTQRVALGISKNFPTVQHLVPMLSLENSYNADDLNDWDRKAREISGLTD---IEYCIEP 139

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII--EVRGE 190
           K DG  I++ YE  K    A RGDG SGED++A IR I +IP         I   E+RGE
Sbjct: 140 KFDGASISLIYENDKLTRGATRGDGVSGEDITANIRQIRSIPLSAHFAAHGIQSIEIRGE 199

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--------RYLNFFVHG 242
           V I+KN F A ND+  A    P ANPRNAASG LR ++P ++          ++++ V  
Sbjct: 200 VLINKNTFKAYNDQRAADNLPPLANPRNAASGSLRMVDPREVAKRGLEAFLYHMSYHVMD 259

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
            GKT     K     LQ +  LGF      ++       ++ Y  E +  R  LPY+IDG
Sbjct: 260 DGKTEPQEIKTHSNTLQLLASLGFRSPAKEMKVVKGIQAVIDYVLEFEKERDNLPYEIDG 319

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KV++++LQ +LG     PRW +++KF  +QA+++L  ++ Q+GRTG +TPVA+++PV
Sbjct: 320 MVIKVNDYALQDKLGMTTHHPRWAMAYKFKARQATSKLRRVEFQVGRTGSVTPVAKIDPV 379

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            IGG  + + +L NED +K            +D+++GD VLV+RAG+VIP +V  + + R
Sbjct: 380 PIGGVTVGSISLFNEDVVK-----------EKDLKIGDTVLVERAGDVIPYIVKSLADLR 428

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               +   FP+ CP+C   + +          +  RC   + C AQ +ER+ HFVS+DA 
Sbjct: 429 DGTEEEIKFPTECPVCNEPLFKPEGE------SVWRCINLM-CEAQVVERMIHFVSKDAM 481

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I  LG+  +  F+        ++    I+ +   Q       E + GFG  S+TNL  +
Sbjct: 482 DIRSLGESNVRKFY----GLGLMKDIPGIYKIDFAQL------EKLEGFGKKSLTNLQSA 531

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I + +   L R IF LGIR+VG   A++LA       +                  L+ +
Sbjct: 532 IEQSKTQPLHRLIFGLGIRYVGETTAKTLANAVNHLLDLKDWTE----------EQLLAL 581

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQK 660
             +G  +A +I +F+    +I  ++ L                   ++ +  +FTGTL K
Sbjct: 582 EDIGPKVAGSINQFFHLDDSIHMLQELEALGLNLKSTKADHPGGGNLDGQTFLFTGTLNK 641

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719
           ++R+ A+  V Q G  + + +S K + +IVGD+ GSKLEKA+++  ++I++E++FL L+Q
Sbjct: 642 LKRNDAEAMVEQQGGKILSGVSSKLNFLIVGDDAGSKLEKAKKINTIRILSEDEFLNLIQ 701


>gi|168183572|ref|ZP_02618236.1| DNA ligase (NAD(+)) [Clostridium botulinum Bf]
 gi|237796711|ref|YP_002864263.1| NAD-dependent DNA ligase LigA [Clostridium botulinum Ba4 str. 657]
 gi|254781290|sp|C3KUA1|DNLJ_CLOB6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|182673387|gb|EDT85348.1| DNA ligase (NAD(+)) [Clostridium botulinum Bf]
 gi|229263356|gb|ACQ54389.1| DNA ligase, NAD-dependent [Clostridium botulinum Ba4 str. 657]
          Length = 664

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 206/714 (28%), Positives = 358/714 (50%), Gaps = 58/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++  L +E++ +   YY    P I D EYD        +        +   P  
Sbjct: 1   MDNKLEKMKKLVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKE----TQVTLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127
           P  ++G ++     K TH     SL+K  N+E L ++  R  +  ++ +         + 
Sbjct: 57  PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116

Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  +  N   +IE
Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNNH--VIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245
           V GE  ++K  F   N       + P  N RN A+G LR L+  +   R L+ F + +G 
Sbjct: 175 VHGEAIMTKTAFEEYNKAA----QVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EM+  +R +G P +  +++      +      ++SIR  L YDIDG V  
Sbjct: 231 NEGPEFKSYREMMNFIRNMGLPQDKYIKECTNMEEVEKEIEYIESIREELDYDIDGAVIV 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   ++ LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG
Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D IK            +++++G +VLV+R+ +VIP+++ ++      ++
Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVVEES-LEES 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 KEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
              +  +  F+  D    I+  +D++ +++ +  +      +  FGD    NL D+I   
Sbjct: 451 FSGKTAEQLFERLD----IKSISDLYKIRKEELLT------LDKFGDKKSQNLIDAIENS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L  FI++LGI +VG + A  L   + + ++            N     L+ VP VG
Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESI----------KNTTIEQLVEVPDVG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+A++I +F+++ + I  +E LL          E+   +    K +V TG+L    R +
Sbjct: 551 EIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMGKTIVVTGSLNNYSRGE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ +  LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F   ++
Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664


>gi|319638552|ref|ZP_07993314.1| DNA ligase [Neisseria mucosa C102]
 gi|317400301|gb|EFV80960.1| DNA ligase [Neisseria mucosa C102]
          Length = 822

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 238/830 (28%), Positives = 370/830 (44%), Gaps = 162/830 (19%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQRIKYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R+             +
Sbjct: 62  VGGEPLSGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRGGLN---GEKPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187
            +EPK DG  I++ Y  G    AA RGDG +GEDV+  ++ +  IP  L     PE+IE+
Sbjct: 119 VIEPKFDGLAISLLYRDGVLTQAATRGDGTTGEDVTQNVKTVSNIPLRLHGENIPELIEI 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246
           RGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 179 RGEVLMLKADFAALNARQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 238

Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304
                A+   + L   + LGF + +G          V  + E    +    PY+IDG+V 
Sbjct: 239 QGGFIAEEHLQELSYCKELGFSLPDGNFGCFPNIDKVLAFYEQMQQKRPTLPYEIDGMVI 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLTQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 A---------------------------QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR 457
                                       +P+  P+ CPIC+S + R+         A  R
Sbjct: 408 EANVTVSDGLQDDLFAKTPSETQAKPLHKPYRLPTHCPICRSEIEREEGE------AVAR 461

Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA-DIFTLQRR 516
           C+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +       +   DI TLQ+ 
Sbjct: 462 CSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQLVAQDLVRHFADLYRLDIPTLQKM 521

Query: 517 QQTSTTKIENIL------------------------GFGDVSVTNLYDSINKRRNISLER 552
           ++ +     N                                  N+   I   +   L R
Sbjct: 522 KEMADKASANEEEPSNSEIGDFEGETGNTLLAKNNKKQPTKWAENILAGIEASKTPELAR 581

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA--------------------HNN 592
           F+F+LGIRHVG   A++LA+ + + ++       I+A                       
Sbjct: 582 FLFALGIRHVGERTAKTLAQAFGTLEHVRHAPEPILACLPDIGTVVAHSIAHFFAQEAQQ 641

Query: 593 DDWLSLIRV--------------------------PL--VGDIIAQAIVE---------- 614
                L+ V                          P   + +  A A+ E          
Sbjct: 642 AMIDELLAVGVVPQSQAVTIPPLRHAEPQRWIARLPDFKISETKALALWELAGQSIEGLQ 701

Query: 615 -----------FYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTL 658
                      +   P+N   +E +         +         ++  +  K  V TGTL
Sbjct: 702 TDKALPADWQAWRSKPQNAALLENMKTFFAQTLSNLQDETISDGINEAVAGKTFVLTGTL 761

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
             ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKAQ LG+ +
Sbjct: 762 PTLKRDQAQAMIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKAQTLGIAV 811


>gi|168179082|ref|ZP_02613746.1| DNA ligase, NAD-dependent [Clostridium botulinum NCTC 2916]
 gi|182670115|gb|EDT82091.1| DNA ligase, NAD-dependent [Clostridium botulinum NCTC 2916]
          Length = 664

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 206/714 (28%), Positives = 357/714 (50%), Gaps = 58/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++  L +E++ +   YY    P I D EYD        +            P  
Sbjct: 1   MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK----TEVTLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127
           P  ++G ++     K TH     SL+K  N+E L ++  R  +  ++ +         + 
Sbjct: 57  PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116

Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  +  N   +IE
Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNNH--VIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245
           V GE  ++K  F   N       + P  N RN A+G LR L+  +   R L+ F + +G 
Sbjct: 175 VHGEAIMTKTAFEEYNKAA----QVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EM+  ++ +G P +  +++      +      ++SIR  L YDIDG V  
Sbjct: 231 NEGPEFKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIV 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   ++ LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG
Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D IK            +++++G +VLV+R+ +VIP+++ ++      ++
Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVVEES-LEES 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 EEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             K+  +  F+  D    I+  AD++ +++ +  +      +  F D    NL D+I   
Sbjct: 451 FSKKTAEQLFEKLD----IKSIADLYKIKKEELLT------LEKFKDKKSQNLIDAIQNS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L  FI++LGI +VG + A  L   + + ++            N     L+ VP VG
Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESI----------KNTTIEQLVEVPDVG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+A++I +F+++ + I  +E LL          E+   +    K +V TG+L    R +
Sbjct: 551 EIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMGKTIVVTGSLNNYSRGE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ +  LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F   ++
Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664


>gi|298369197|ref|ZP_06980515.1| DNA ligase, NAD-dependent [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283200|gb|EFI24687.1| DNA ligase, NAD-dependent [Neisseria sp. oral taxon 014 str. F0314]
          Length = 830

 Score =  465 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 242/835 (28%), Positives = 373/835 (44%), Gaps = 171/835 (20%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQRIKHLTALLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  +
Sbjct: 62  VGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187
            +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L     PE+IEV
Sbjct: 119 VIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIEV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246
           RGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 179 RGEVLMLKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVARQ 238

Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304
                A+   + L   + LGF + NG          V  + E    +    PY+IDG+V 
Sbjct: 239 QGGFVAEEHIQELAYFQELGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVV 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLAQQRELGFISRAPRWAIAHKFPAEEALTVVEAIDVQIGRTGTVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 A--------------------------------QPFSFPSFCPICQSRVVRDLNPKTGKL 452
                                            +P+  P+ CPIC S + R+        
Sbjct: 408 ETAVAVSDGLKHQQDDLFAETPSANQTQSVPLHKPYRLPTHCPICHSEIEREEGE----- 462

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
            A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++ 
Sbjct: 463 -AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQLVAQD----LVRHFADLYR 517

Query: 513 LQRRQQTSTTKIENI-------------------------LGFGDVSVTNLYDSINKRRN 547
           L         +  +                                   N+   I   + 
Sbjct: 518 LDIPTLQKMKETADKGSSENENGDAETVSDDLSESNTQNGKKQPTKWAENILAGIEASKT 577

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------------------ 589
             L RF+F+LGIRHVG   A++LA+ + S ++  +    I+A                  
Sbjct: 578 PELARFLFALGIRHVGERTAKTLAQAFGSLEHVRRAPEPILACLPDIGTVVARSIAHFFA 637

Query: 590 --HNNDDWLSLIR--------------------------VPL--VGDIIAQAIVE----- 614
                     L+                           +P   + +  AQA+ E     
Sbjct: 638 QDAQQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKS 697

Query: 615 ----------------FYQNPRNICAVEALLKEVSPSIGRHEKNV-----SSEIENKKLV 653
                           +    +N   +E L    + +   ++  V     +  +  K  V
Sbjct: 698 IEGLQTDKALPADWQAWRSETQNAVLLENLKTFFAQTSSENQDEVFSDDLNEAVAGKTFV 757

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
            TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +
Sbjct: 758 LTGTLPILKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVAV 812


>gi|88608555|ref|YP_506384.1| DNA ligase, NAD-dependent [Neorickettsia sennetsu str. Miyayama]
 gi|123736355|sp|Q2GDR2|DNLJ_NEOSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|88600724|gb|ABD46192.1| DNA ligase, NAD-dependent [Neorickettsia sennetsu str. Miyayama]
          Length = 670

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 246/708 (34%), Positives = 390/708 (55%), Gaps = 49/708 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A+KE+  L +++  H+  YYQ   P I D+EYD++K R   +  A P L          
Sbjct: 2   EAKKEIQELYEKLLRHNKKYYQDDSPEITDAEYDSIKDRYLKLLEANPSLGFPVV----- 56

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +G   +    KV H  P LSL  I++ E+L ++I +  RF   K  +++ F  EPKID
Sbjct: 57  --VGYPASEKFQKVKHLSPMLSLRNIFSEEELVEYIEKTKRFLNLK--SALEFLCEPKID 112

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G   + RY  GK V  A RGDG  GE++   ++ I   P  +    P+++EVRGEV++  
Sbjct: 113 GVSFSARYVNGKLVSCATRGDGKIGENIIDNMKVINGFPIEIMDV-PDLLEVRGEVFLDH 171

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
           + F  L           ++NPRNAA+G LR+LNP +IT   N        +     + Q 
Sbjct: 172 DTFQTLE---------GFSNPRNAAAGSLRQLNP-EITNERNLQYFAYSASKIDGIEHQE 221

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++L  +   GF  N     ++    I+S+Y+ +   RS + YDIDGLVYKV++  L  +L
Sbjct: 222 DVLHFLSGRGFMTNPLRLASSKVPEIMSFYDSVYRRRSQIKYDIDGLVYKVNDLKLHARL 281

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  + +PRW I+HKF   +A T L  I + +GRTGI+TPVA L+P+ IGG +I+ A+L+N
Sbjct: 282 GTLSDAPRWAIAHKFPSHRAKTILEKIKLSVGRTGIITPVAHLKPITIGGVVISRASLYN 341

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED ++            +DIR GD V+V+RAG+VIPKV+++ ++ R  + + F FP  CP
Sbjct: 342 EDELER-----------KDIREGDLVIVERAGDVIPKVLEVDISYRT-NQERFIFPDKCP 389

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S ++R  N       AA RC     C  Q ++++KH VS  AF+I+G+G   + FF 
Sbjct: 390 SCSSTLIRKNNE------AATRCNNSKKCPEQVIQQIKHLVSAQAFDIDGIGTSHISFFI 443

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       I  PADIF L + +     +I+   G+G+ SV N+  +I   R ISLE+FIF
Sbjct: 444 EK----GFISEPADIFRLDKHRD----EIKKYDGWGEKSVENILKNIKNSRKISLEKFIF 495

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           SLGI+++G + A  LA+ + S+ N+  ++ +++  +      +  +  +G  I +++++F
Sbjct: 496 SLGIKNIGEKTAYMLAQQFKSFANWFDKM-SMLKDDTQTEDEIRNLDGMGSCICESLLDF 554

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           + +  N   V++L   V   I  H  N+   +  KK VFTGTL  I R +A+E + + G 
Sbjct: 555 FSDSDNCNMVKSLSNHV--MITDHTVNIGGSLSGKKFVFTGTLLSITREEAKEIIKKAGG 612

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +V   +S++ D ++ G+  GSKL KA +LG+ I+ E+  +      NT
Sbjct: 613 IVVNSISKQIDYVVAGEKAGSKLAKANELGIAIIEEKTLIEFTNGNNT 660


>gi|241759788|ref|ZP_04757888.1| DNA ligase, NAD-dependent [Neisseria flavescens SK114]
 gi|241319796|gb|EER56192.1| DNA ligase, NAD-dependent [Neisseria flavescens SK114]
          Length = 859

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 240/834 (28%), Positives = 372/834 (44%), Gaps = 170/834 (20%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 42  AQRIKYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQR 98

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R++            +
Sbjct: 99  VGGEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVHGGLN---GEKPEY 155

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187
            +EPK DG  I++ Y  G    AA RGDG +GEDV+  ++ +  IP  L     PE+IE+
Sbjct: 156 VIEPKFDGLAISLLYRDGVLTQAATRGDGTTGEDVTQNVKTVSNIPLRLHGENIPELIEI 215

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246
           RGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 216 RGEVLMLKADFAALNARQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 275

Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304
                A+   + L   + LGF + +           V  + E    +    PY+IDG+V 
Sbjct: 276 QGGFIAEEHLQELSYCKELGFSLPDSNFGCFPNIDEVLAFYEQMQQKRPTLPYEIDGMVV 335

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 336 KVNSLAQQEKLGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 395

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 396 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 444

Query: 425 AQPFSF---------------------------PSFCPICQSRVVRDLNPKTGKLVAAHR 457
               S                            P+ CPIC S + R+         A  R
Sbjct: 445 ETKISVSDGLQDDLFAETPSETRSEPIHKPYRLPTHCPICHSEIEREEGE------AVAR 498

Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ--- 514
           C+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++ L    
Sbjct: 499 CSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQLVAQD----LVRHFADLYRLDIPT 554

Query: 515 -------------RRQQTSTTKIENILG-------------FGDVSVTNLYDSINKRRNI 548
                          ++ S ++IE+  G                    N+   I   +  
Sbjct: 555 LQKMKETADKASANEEEPSNSEIEDFEGETGNTLLAKNVKKQPTKWAENILAGIEASKTP 614

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------------------- 589
            L RF+F+LGIR+VG   A++LA+ + + +N       I+A                   
Sbjct: 615 ELARFLFALGIRYVGERTAKTLAQAFGTLENVRHAPEPILACLPDIGTVVARSIAHFFAQ 674

Query: 590 -HNNDDWLSLIRV--------------------------PL--VGDIIAQAIVE------ 614
                    L+ V                          P   + +  A A+ E      
Sbjct: 675 KAQQAMIDELLAVGVAPQSQAVTIPPLRHAEPQRWIARLPDFKISETKALALWELAGQSI 734

Query: 615 ---------------FYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVF 654
                          +   P+N   +E +         +         ++  +  K  V 
Sbjct: 735 EGLQTDKALPADWQTWRNKPQNATLLENMKTFFAQTRSNLQDETISDGINEAVAGKTFVL 794

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
           TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKAQ LGV +
Sbjct: 795 TGTLPTLKRDQAQAMIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKAQTLGVAV 848


>gi|78187553|ref|YP_375596.1| DNA ligase (NAD+) [Chlorobium luteolum DSM 273]
 gi|123743616|sp|Q3B278|DNLJ_PELLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78167455|gb|ABB24553.1| DNA ligase (NAD+) [Chlorobium luteolum DSM 273]
          Length = 677

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 215/696 (30%), Positives = 345/696 (49%), Gaps = 50/696 (7%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90
           H+  YY  +KP I D ++D L  R   +    P+L     P+ P  ++GG +      V 
Sbjct: 24  HNHLYYVEAKPEISDYDFDRLLLRLIELEREHPELV---TPDSPTGRVGGAVTREFPPVE 80

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
           H  P LSL   ++I ++ +F  R+ R  + +         E K DG  +++ Y  G  V 
Sbjct: 81  HREPMLSLSNTYSIGEVEEFSARVGRLLEAEGIRDRDMVAELKFDGVAVSLLYRDGVLVR 140

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-------IEVRGEVYISKNDFLALND 203
            A RG+G  G+D++  +R +PT+P  L              +EVRGEV++ K DF ALND
Sbjct: 141 GATRGNGRRGDDITVNLRTVPTVPLRLQTLDTPFSLGEGREVEVRGEVFMRKEDFTALND 200

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
                    +ANPRNA +G L+  +  ++     +FV       +      +  LQ +  
Sbjct: 201 TRPE--EDRFANPRNATAGTLKLQDSAEVAVRRLWFVAYYLDGIQDPDTPHFHRLQLLET 258

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
            GF      R       I ++       R  LPY+ DG+V K+++    K LG  ++SPR
Sbjct: 259 AGFFTGGHYRLCKGMQEIAAFIARWNEERWHLPYETDGVVLKLNDVRQWKTLGATSKSPR 318

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           W I++K+  +QA+T L D+  Q+GR G +TPVA LEPV + G+ ++ +TLHN D ++ L 
Sbjct: 319 WAIAYKYPAQQATTVLRDVVFQVGRLGTITPVAELEPVRLAGSTVSRSTLHNFDEMRRL- 377

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
                      I +GDRV+++++GEVIPKV+ ++   R  DA+    PS CP C + +VR
Sbjct: 378 ----------GIMIGDRVVIEKSGEVIPKVIRVVTEARPVDARLVELPSRCPACSTPIVR 427

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
           +             C     C AQ   R+ HF SR+A +I+ LG+  ++           
Sbjct: 428 EEGE------VGFYCPNEAGCPAQLKGRILHFASRNAMDIQNLGEALVEQLV----AFGL 477

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           +  P D++ LQ  Q      + N+   G  S  N+  ++++ R+ S  R +F+LGIRHVG
Sbjct: 478 VHDPGDLYFLQEPQ------LRNLERMGPKSAQNVVRALDESRSQSYARLLFALGIRHVG 531

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              AR LA+ + S +         +A           V  +G +IA++I E+++ P    
Sbjct: 532 QATARELARAFPSIEALEAASEEELA----------DVADIGPVIARSIREWFEAPAVSA 581

Query: 624 AVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
            +E L     P      K  ++S  E   +VFTG L +  R  A E V + G  + + +S
Sbjct: 582 LLEKLRDARLPLAAEDPKPLINSNFEGLSVVFTGALLRHDRQSASELVLERGGKIVSTVS 641

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +KT +++ G   GSKLEKA +LG+++++EE+F  +L
Sbjct: 642 KKTGLVVAGREAGSKLEKALKLGLRVISEEEFEAML 677


>gi|37520296|ref|NP_923673.1| NAD-dependent DNA ligase LigA [Gloeobacter violaceus PCC 7421]
 gi|81710991|sp|Q7NMN8|DNLJ_GLOVI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|35211289|dbj|BAC88668.1| DNA ligase [Gloeobacter violaceus PCC 7421]
          Length = 668

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 208/719 (28%), Positives = 329/719 (45%), Gaps = 78/719 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  +   +L   +      YY    P + D+ YD   R    +   +P+L     P+ P 
Sbjct: 8   EIEEHTRTLRALLHRWGYAYYVLDAPEVSDAIYDQHYRELVDLESRYPELV---SPDSPT 64

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++G     +   VTH +P  SLE  ++  +L K+  R+ R         + F  E KID
Sbjct: 65  RRVGERPASAFVSVTHRVPMFSLENAFSQAELEKWGERLLRAIG----PGLEFICELKID 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194
           G+   + YE G  V  A RGDG  GE+++  +R I  IP  L    +P ++EVRGE +I 
Sbjct: 121 GSATALSYEDGVLVRGATRGDGVEGEEITQNLRTIRAIPLKLLGGEVPAVLEVRGEAFIP 180

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKG 253
           +++F  +N E  A G K +ANPRNA +G LR+L+     +R L FF +         A+ 
Sbjct: 181 RDEFERINQERQAAGEKLFANPRNACAGTLRQLDSRVVASRRLGFFAY---TAHYGRAES 237

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q+E L ++   GF VN           + ++    ++ R  LPYD DG+V KV+ F  Q+
Sbjct: 238 QWEALAELESHGFRVNPHRSLCRDLAEVRTFCEHWENHRHELPYDTDGVVVKVNAFDHQR 297

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           ++G  ++ PRW I+ K+  ++ ST +  I +Q+GRTG LTPVA L+PV + G  ++ ATL
Sbjct: 298 EVGFTSKFPRWAIAFKYPAEEKSTVVEAIAVQVGRTGALTPVAELQPVAVAGTTVSRATL 357

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN+D I+ L           D+RVGD V++++AGE+IP+VV +I   R P+A P+ FP  
Sbjct: 358 HNQDRIESL-----------DVRVGDTVIIRKAGEIIPEVVRVIGELRPPEAVPYVFPQT 406

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + VVR          AA RC     C A    +L H+ +              D 
Sbjct: 407 CPECGTAVVRAPGE------AAVRCPNPR-CPALIRGKLGHWCAALEI------DGIGDK 453

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                     +   AD++ L   Q         +   G  S   + + +++       R 
Sbjct: 454 LIARLVSLGLVHTVADLYELSAEQLAG------LERLGARSAAKIVEQLDRSHRQPWSRV 507

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           ++ LG+RH+GA ++  LA+ + S    A+     IA           +   G+ +A+++V
Sbjct: 508 LYGLGLRHIGASVSVELARAFASADALARADLAAIA----------SLYGFGEELARSVV 557

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           E++    N   +E L        G      SS +     V TGTL  + R +    +   
Sbjct: 558 EWFAQAENRALLERLKAHGLQLAGGGRAAQSSALAGLTFVITGTLPTLSREECTALIESH 617

Query: 674 GAVVSAILSRKTDIII-------------VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G                             G+  GSKL +AQ L V +++EEQ   L++
Sbjct: 618 GGK-------------VTSSVSSRTSYVVAGEKAGSKLARAQDLKVAVLDEEQLRALIE 663


>gi|224437677|ref|ZP_03658624.1| NAD-dependent DNA ligase LigA [Helicobacter cinaedi CCUG 18818]
 gi|313144124|ref|ZP_07806317.1| DNA ligase [Helicobacter cinaedi CCUG 18818]
 gi|313129155|gb|EFR46772.1| DNA ligase [Helicobacter cinaedi CCUG 18818]
          Length = 651

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 228/706 (32%), Positives = 358/706 (50%), Gaps = 61/706 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ ++    +  L +        YY    PI  DS+YD L  +        P L     P
Sbjct: 1   MTQQEYSSNIQKLTKM----AYHYYVLDDPIATDSQYDELYHQVLNFERQNPILI---SP 53

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG    S  K +H     SLE ++N  +++++  RIY+ +         FT  
Sbjct: 54  NSPTQRVGGTPLESFSKNSHIERMWSLEDVFNQAEMQEWCERIYKSYPHS-----HFTCS 108

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK DG  + + Y  G  V A  RGDG  GE V++  R I +IP  LS++    IE+RGEV
Sbjct: 109 PKFDGASLNLLYRDGILVSATTRGDGIVGELVTSNARTIQSIP--LSIDYKGEIEIRGEV 166

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            I+K+DF  +N+E +      +ANPRNAA+G LR+L+      R L F   G+G      
Sbjct: 167 VIAKDDFEKINNERLEQNLSLFANPRNAAAGSLRQLDSKITAQRKLRFMPWGIGAGL-SQ 225

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               YE LQK+   GF     +        I+  Y  + S R   P  +DG+V  +DE  
Sbjct: 226 FGSFYEALQKITDFGFAPVPFLTHCEGSDDIMQMYKILISKRDDYPIMLDGMVIMLDEIE 285

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q++LG   ++PR+  + KF   + S+++LDI +Q+GRTGI+TPVA LEPV I GA+I  
Sbjct: 286 IQQRLGWTIKAPRFACAFKFPAVEKSSKILDITLQVGRTGIITPVAELEPVEIEGAMIAR 345

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN   I+            +DIR+ D V++ R+G+VIPK++  I   R     P + 
Sbjct: 346 ATLHNFSEIER-----------KDIRINDEVIIIRSGDVIPKIIKPITALRDGTQIPITK 394

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C+  ++ +                 L+C A+ +E + HF S+ A NI+GLG++ 
Sbjct: 395 PTHCPVCRQELLIEE---------IFIKCQNLSCEARVIESIIHFASKKALNIDGLGEKI 445

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F++      I+   DI+ L+  Q  +      + G+ +    NL  +I     + L
Sbjct: 446 VIQLFEN----GLIQSILDIYALEESQLLA------LEGWKEKRAKNLIVAIQNTIGVEL 495

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI +LGI H+G   ++ LA+ +                 + D+  ++ +   G+ +A 
Sbjct: 496 WRFINALGIEHIGEGASKRLAQSFG------------RDTFSADFQQILGLDGFGEEMAY 543

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++VEF  N  N   +  LL+ +SP I + + +       K +V TGTL K  R +  E +
Sbjct: 544 SLVEF--NHANKELIAKLLEIISPKIEQIKLDSGHIFYGKSIVLTGTLNK-PRDEIVEML 600

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
              GA +S+ +S+KTD +I G+  GSKLEKAQ LGVK ++EE+F+ 
Sbjct: 601 ESKGAKISSSVSKKTDFVIYGEKAGSKLEKAQNLGVKTLSEEEFMA 646


>gi|149195296|ref|ZP_01872384.1| NAD-dependent DNA ligase LigA [Caminibacter mediatlanticus TB-2]
 gi|149134560|gb|EDM23048.1| NAD-dependent DNA ligase LigA [Caminibacter mediatlanticus TB-2]
          Length = 682

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 215/729 (29%), Positives = 353/729 (48%), Gaps = 77/729 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E     + +      YY    P++ D EYD L +  +      PD     D   P  +I
Sbjct: 6   EEYKKAVETLKKWAYYYYVLDNPLVTDEEYDKLYKEVEEYEKNHPDEV---DKTSPTQRI 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G  +     K  H     S+E +++  +   ++ R+ R      +++  F +EPK DG  
Sbjct: 63  GDVVLDEFKKAKHITKMWSMEDVFDKNEFIDWVNRVKRAIG---NDNFSFYIEPKFDGAS 119

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + Y+ G+ + A  RGDG  GEDV+   + I TIP  L++    +IE+RGEV I K DF
Sbjct: 120 LNLVYKNGELIRAETRGDGEIGEDVTLNAKTIKTIP--LTIKYKGLIEIRGEVVIKKQDF 177

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT----------- 246
             LN+E I  G   +ANPRNAA+G LR+L+P     R L F+  G+G             
Sbjct: 178 DKLNEERIKKGEPTFANPRNAAAGSLRQLDPKITANRPLLFYPWGVGYPIEVLISDEVSK 237

Query: 247 ---------SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV--SYYNEMKSIRSTL 295
                         K    ++  +  LGF       +            YNE   IR  +
Sbjct: 238 EEYERDKKEFIEKFKTYKNIMDFVYSLGFKEPPKRGECKASDIECVLKKYNEFVEIRDEI 297

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           P  +DG+V KV+E +L + LG  A+ PRWM+++KF   +  T + D+ +Q+GRTG+LTPV
Sbjct: 298 PVMLDGMVVKVNELNLLENLGYTAKYPRWMVAYKFPAIEKETIIEDVIVQVGRTGVLTPV 357

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A L+P+ IGG ++  ATLHN D I+ +           DIR+GDRV+V R+G+VIPK+  
Sbjct: 358 AILKPIEIGGVIVERATLHNFDEIERM-----------DIRIGDRVIVIRSGDVIPKITK 406

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           ++ ++R  + +    P+ CP+C S V+ +          A      L+C A+ +  + + 
Sbjct: 407 VLYHKRTGNEKKIPRPTHCPVCGSEVLDEG---------AIIKCQNLSCPARVVNTIIYA 457

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
            S++  +IEGLG+      ++       ++   D+F L+          E +  F     
Sbjct: 458 ASKNCLDIEGLGESVAKLLYEK----GLVKDIRDLFKLKVEDL------EKLPLFARKKA 507

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            NL ++I+K + I   RF+ +LGI H+G   ++ + + +             +       
Sbjct: 508 ENLVNAISKVKGIECWRFVNALGIEHIGEVASKKICEKFG------------VEFYKHSP 555

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
                +   G  + ++I E+     N   +E L+K + P+  + E  V+S    K +V T
Sbjct: 556 EEFYELEGFGPEMVKSIAEY--VKVNKDKIEELIKLIEPTNPKKEV-VNSPFTGKTVVLT 612

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           G++ K  R + +E +  LGA V+  +S+KTD +IVG++PGSK EKA++LG+ I+ EE   
Sbjct: 613 GSMSK-SRSEIKEMLENLGAHVTNSVSKKTDYVIVGEDPGSKFEKAKKLGITILKEEDMW 671

Query: 716 FLLQQYNTT 724
            ++   N  
Sbjct: 672 NMIGDGNGD 680


>gi|329120426|ref|ZP_08249092.1| NAD-dependent DNA ligase LigA [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327462110|gb|EGF08438.1| NAD-dependent DNA ligase LigA [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 887

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 244/846 (28%), Positives = 383/846 (45%), Gaps = 162/846 (19%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +     ++  L   ++ +   YY    P + D+EYD L R  +A+  A P+L     P+ 
Sbjct: 64  MNDPAAKIRELTDLLNRYGYEYYTLDAPSVPDAEYDRLFRELEALEAAHPELKL---PDS 120

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDN 124
           P  ++GG       +V H +P LSL   ++ +         ++  F  R+          
Sbjct: 121 PTQRVGGAPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMTAFDERVRGGLG---GA 177

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPE 183
           +  + +EPK DG  +++ Y  G    AA RGDG SGEDV+  I+ +  IP  L   + P 
Sbjct: 178 NPQYVIEPKFDGLAVSLLYRDGVLQQAATRGDGASGEDVTQNIKTVSNIPLRLHGADTPA 237

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHG 242
           +IE+RGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + 
Sbjct: 238 LIEIRGEVLMLKADFAALNRRQEEAGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYS 297

Query: 243 LG-KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDID 300
           +  +     A+   + L+    LGF +  G          V  + E    +    PY+ID
Sbjct: 298 IARQEGGFAAESHIQELEYCGTLGFSLPEGNYGCFGNIAEVLAFYEQMQQKRPALPYEID 357

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+P
Sbjct: 358 GMVVKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTTVEAIDVQIGRTGAVTPVARLQP 417

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +++  
Sbjct: 418 VFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVVLER 466

Query: 421 RHPDA--------------------------QPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
           R   A                           P+  P  CPIC+S + R+         A
Sbjct: 467 RPMKAATVSNDTNAQNDLFEQRPSEKTQPAYPPYRLPENCPICRSPIEREEGE------A 520

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ 514
             RC+GG+ CSAQ+ + L HF SR A +I+GLG++Q++     +       +      + 
Sbjct: 521 VARCSGGMLCSAQRAQGLIHFASRKAMDIDGLGQKQIEQLVAQDLVRHFADLYRLDVPVL 580

Query: 515 RRQQTSTTKIENI------------LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
           ++ + +  + EN+                     N+   I   +   L RF+F+LGIRHV
Sbjct: 581 QKMKETAEQSENVSDGLSNTSAAKPKKQPTKWAENIIAGIENSKTPELARFLFALGIRHV 640

Query: 563 GAEIARSLAK-------------------------------YYLSYQNFAQEINNIIAHN 591
           G   A++LA+                               ++ +       I+ ++A  
Sbjct: 641 GERTAKTLAQAFGTLDTVRRAPEPVLACLPDIGEVVARSVAHFFAQDAQQAMIDELLAAG 700

Query: 592 NDDWLS---------------LIRVPL--VGDIIAQAIVE-------------------- 614
                                L R+P   + +  AQA+ E                    
Sbjct: 701 VAPKTQPATLPVLRHAEPQRWLARLPDFKISETKAQALWELAGKKTDALLTDQALPADWQ 760

Query: 615 -FYQNPRNICAVE---ALLKEV------SPSIGRHEKNV----------SSEIENKKLVF 654
            +   P+N   +    A L E+             E ++          +  +  K  V 
Sbjct: 761 AWRSVPQNETLLRHTIAFLNELDQRSSRGREAAHSESSIADTANLSDGLNEAVAGKTFVL 820

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL  ++R +AQ  +   G  VS  +S+KTD +I G+  GSKLEKA  LGV ++ EE+ 
Sbjct: 821 TGTLPTLKRDQAQAMIEAAGGKVSGSVSKKTDYVIAGEAAGSKLEKALALGVAVLGEEEL 880

Query: 715 LFLLQQ 720
           L +L +
Sbjct: 881 LAMLGR 886


>gi|148381215|ref|YP_001255756.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. ATCC 3502]
 gi|153931904|ref|YP_001385590.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A str. ATCC
           19397]
 gi|153935840|ref|YP_001388996.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A str. Hall]
 gi|166215576|sp|A7FYL7|DNLJ_CLOB1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215577|sp|A5I6Z7|DNLJ_CLOBH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148290699|emb|CAL84829.1| DNA ligase [Clostridium botulinum A str. ATCC 3502]
 gi|152927948|gb|ABS33448.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. ATCC 19397]
 gi|152931754|gb|ABS37253.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. Hall]
          Length = 664

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 205/714 (28%), Positives = 358/714 (50%), Gaps = 58/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++  L +E++ +   YY    P I D EYD        +            P  
Sbjct: 1   MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK----TEVTLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127
           P  ++G ++     K TH     SL+K  N+E L ++  R  +  ++ +         + 
Sbjct: 57  PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116

Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  +  N   +IE
Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNNH--VIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245
           V GE  ++K  F   N       + P  N RN A+G LR L+  +   R L+ F + +G 
Sbjct: 175 VHGEAIMTKTAFEEYNKAA----QVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EM+  ++ +G P +  +++      +      ++SIR  L YDIDG V  
Sbjct: 231 NEGPEFKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIV 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   ++ LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG
Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D IK            +++++G +VLV+R+ +VIP+++ ++      ++
Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVVEES-LEES 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 KEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+  D    I+  AD++ +++ +  +      +  F D    NL D+I   
Sbjct: 451 FSEKTAEQLFEKLD----IKSIADLYKIKKEELLT------LEKFKDKKSQNLIDAIQNS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L  FI++LGI +VG + A  L   + + ++            N     L+ VP VG
Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESI----------KNTTIEQLVEVPDVG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+A++I +F+++ + I  +E LL          E+   +   +K +V TG+L    R +
Sbjct: 551 EIVAKSIYDFFEDEKVISNIEELLNLGVKPYYEEERIDENPFMDKTIVVTGSLNNYSRGE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ +  LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F   ++
Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664


>gi|153940260|ref|YP_001392616.1| NAD-dependent DNA ligase LigA [Clostridium botulinum F str.
           Langeland]
 gi|166215578|sp|A7GIK6|DNLJ_CLOBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|152936156|gb|ABS41654.1| DNA ligase, NAD-dependent [Clostridium botulinum F str. Langeland]
 gi|295320603|gb|ADG00981.1| DNA ligase, NAD-dependent [Clostridium botulinum F str. 230613]
          Length = 664

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 206/714 (28%), Positives = 358/714 (50%), Gaps = 58/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++  L +E++ +   YY    P I D EYD        +            P  
Sbjct: 1   MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK----TEVTLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127
           P  ++G ++     K TH     SL+K  N+E L ++  R  +  ++ +         + 
Sbjct: 57  PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116

Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  L +    +IE
Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVP--LKIKNSYVIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245
           V GE  ++K  F   N       + P  N RN A+G LR L+  +   R L+ F + +G 
Sbjct: 175 VHGEAIMTKTAFEEYNKAA----QVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EM+  +R +G P +  +++      +      ++SIR  L YDIDG V  
Sbjct: 231 NEGPEFKSYREMMNFIRNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIV 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   ++ LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG
Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D IK            +++++G +VLV+R+ +VIP+++ ++      ++
Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVVEES-LEES 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 EEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+  D    I+  AD++ +++ +  +      +  F D    NL D+I   
Sbjct: 451 FSEKTAEQLFEKLD----IKSIADLYKIKKEELLT------LEKFKDKKSQNLIDAIQNS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L  FI++LGI +VG + A  L   + + ++            N     L+ VP VG
Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESI----------KNTTIEQLVEVPDVG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+A++I +F+++ + I  +E LL          E+   +   +K +V TG+L    R +
Sbjct: 551 EIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMDKTIVVTGSLNNYSRGE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ +  LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F   ++
Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664


>gi|11513386|pdb|1DGS|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
           Filiformis
 gi|11513387|pdb|1DGS|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
           Filiformis
          Length = 667

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 234/720 (32%), Positives = 376/720 (52%), Gaps = 59/720 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+AR+ ++ L   I YH+  YY  + P I D+EYD L R    +   FP+      P
Sbjct: 1   MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFK---SP 57

Query: 72  NGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G      +   V H     SL+  +  E++  F        +++ +    +T+
Sbjct: 58  DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAF----EERLEREAEAPSLYTV 113

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G +   +  GDG  GE+V+  +  IPTIPR L    P+ +EVRGE
Sbjct: 114 EHKVDGLSV-LYYEEGVWSTGS--GDGEVGEEVTQNLLTIPTIPRRLKGV-PDRLEVRGE 169

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTS 247
           VY+    FL LN+E+   G K + NPRNAA+G LR+ +P    +      F+  GLG   
Sbjct: 170 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLGL 229

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           E    K QYE+L  ++  GFPV +   +A    G+   Y    + R  LP++ DG+V K+
Sbjct: 230 EESGLKSQYELLLWLKEKGFPVEHCYEKALGAEGVEEVYRRGLAQRHALPFEADGVVLKL 289

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +L  +LG  AR+PR+ +++KF  ++  TRLLD+  Q+GRTG +TPV  LEPV I G+
Sbjct: 290 DDLTLWGELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGS 349

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++   R    +
Sbjct: 350 EVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGKER 398

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  +P  CP C  R+V++           HRC   L C A++ E ++H+ SR A +IEGL
Sbjct: 399 PIRWPEACPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIEGL 449

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ ++   +       +R  AD++ L++           +   G+ S  NL   I + +
Sbjct: 450 GEKLIERLLEK----GLVRDVADLYHLRKEDLLG------LERMGEKSAQNLLRQIEESK 499

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +  LER +++LG+  VG  +AR+LA+ + +     +     +    +             
Sbjct: 500 HRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELIEVEEVGE---------- 549

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           + A+AI+E  ++P     V  L +       + E  VS  +     V TG L +  R + 
Sbjct: 550 LTARAILETLKDPAFRDLVRRLKEAGVSMESKEE--VSDLLSGLTFVLTGELSR-PREEV 606

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           +  + +LGA V+  +SRKT  ++VG+NPGSKLEKA+ LGV ++ EE+F   L++    + 
Sbjct: 607 KALLGRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKEKGAPVP 666


>gi|297566494|ref|YP_003685466.1| DNA ligase, NAD-dependent [Meiothermus silvanus DSM 9946]
 gi|296850943|gb|ADH63958.1| DNA ligase, NAD-dependent [Meiothermus silvanus DSM 9946]
          Length = 670

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 221/719 (30%), Positives = 350/719 (48%), Gaps = 73/719 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A++ +  L +EI YH+  YY    P+I D+EYD L R    +   +P+L     P+ P 
Sbjct: 10  EAQRRIHQLREEIRYHNYRYYVLDDPVISDAEYDRLLRELKELEARYPELV---TPDSPT 66

Query: 76  NKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             +G G++  S   + H  P  SL+  +  ED+R F  RI R           + LE KI
Sbjct: 67  QTVGPGKIETSFAAIPHPTPLYSLDNAFGPEDIRLFEERIARSLGMPA--PFPYVLEYKI 124

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  + + YE+G  ++ A RG+G  GEDV+  + A+  IP  +    P  +EVRGEVY+ 
Sbjct: 125 DGLSVNLYYEEGTLLWGATRGNGQVGEDVTPNLMAVEGIPHRVVGAPP-RLEVRGEVYLP 183

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAK 252
              FL +N E+   G  P+ NPRNAA+G LR+ +P     R L   ++ +G   +E   +
Sbjct: 184 IETFLKVNAELEEQGLPPFKNPRNAAAGSLRQKDPRVTAKRGLKAVLYSIGLGLAESEVR 243

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E+L+ ++ LGF +    ++A  +  +   Y  M + R  LPY+ DG+V K+D+  LQ
Sbjct: 244 SQSELLEYLKHLGFAIEPHYQKAVGWRAVEETYQRMLAKRRQLPYEADGVVVKLDDIRLQ 303

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG  ++SPRW I++KF  ++  TR++ ++  +GRTG +TPVA LEPV+I G+ ++   
Sbjct: 304 ADLGFTSKSPRWAIAYKFPAEEKITRVVGVEFTVGRTGRITPVANLEPVDIEGSTVSRVV 363

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+ Y++ L           D+  GD+VL+ +AG VIP+V+ +I   R   A   ++P+
Sbjct: 364 LHNQSYLEEL-----------DLHYGDQVLIHKAGGVIPEVLRVIPEARPKGAVKVTYPT 412

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +V +           H C   L C A+  E + H+ SR A +I+GLG++ + 
Sbjct: 413 RCPECGTPLVLE--------GKIHLCPNPL-CPAKAYEAILHYASRGAMDIQGLGEKLVA 463

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      +R P+D++ L + Q         +   G+ S  NL D I   +   LER
Sbjct: 464 KLLAE----GLVRDPSDLYKLTKEQLMG------LERMGEKSAQNLIDQIEASKGRGLER 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F+LGI  VGA +AR+LA+ +                       L  V  V    A+ I
Sbjct: 514 LLFALGIPQVGAALARTLARRFGHLDRLLAA----------SVQDLDEVEDVALPTAERI 563

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            +          +E L      S    EK     ++    V TG L +  R +    +  
Sbjct: 564 YQTLHQKDMRAYIERLRAAGV-SFEAKEKPQGDRLKGLTFVLTGELSR-PREEILRRLEA 621

Query: 673 LGA-----------VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           LGA                       ++ G+  GSKL+KA++LGV +++E     LL +
Sbjct: 622 LGAKVSSSVSKKTS-----------YVVAGEGAGSKLQKARELGVPVLDEAGLEALLSR 669


>gi|253680829|ref|ZP_04861632.1| DNA ligase, NAD-dependent [Clostridium botulinum D str. 1873]
 gi|253562678|gb|EES92124.1| DNA ligase, NAD-dependent [Clostridium botulinum D str. 1873]
          Length = 664

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 201/713 (28%), Positives = 353/713 (49%), Gaps = 58/713 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  ++++  L  E++     YY    P + D +YD        +      L        
Sbjct: 1   MEVKKQKIYKLVDELNKLAYEYYVLDNPSVADKDYDKKYDELVQLEKETGMLLSY----S 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G  +     K TH     SL K  ++E+++ +  +  +   + + N       I 
Sbjct: 57  PTQRVGDVVLGKFEKYTHKGKLWSLGKAQSLEEVKDWHNKNIKAINEYNLNHEDKLPPIK 116

Query: 128 FTLEPKIDGTMITIRYEK-GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  I   Y   G  V AA RG G  GED++   + I T+P  L +N   +IE
Sbjct: 117 YIITKKFDGLTINCTYNNDGILVAAATRGTGEIGEDITLQAKTIKTLP--LKINNNALIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           V GE  ++K  F   N         P  N RN A+G LR LN      R L+ F + +G 
Sbjct: 175 VHGEAIMTKEAFQEYNKVA----DVPLKNLRNGAAGALRNLNVRETARRNLSAFFYDVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EML+ ++  G P+++ V+  +T   I      ++ IR  L YDIDG+V  
Sbjct: 231 NEGTPFKTYSEMLKFIKEQGIPMDDYVKPCSTVEEIEKEIKYIEKIRDNLNYDIDGIVIA 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +D+   ++ +G   + P+W +++KF  ++A+T+L+D++  +GR+G +TP A LEPV IGG
Sbjct: 291 IDDMKTREVIGYTVKFPKWALAYKFEAQEATTKLIDVEWNVGRSGRVTPTAILEPVEIGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D I             + +++G  V ++R+ +VIP+++ ++ N    + 
Sbjct: 351 VTVKRATLNNMDDISR-----------KGVKLGSVVFLRRSNDVIPEIMGVVENS-LENT 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP C S VV++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 REIKAPEICPYCGSEVVQE--------GVHYFCENTLSCKPQLVKSIVHFGSREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+  D    I+   D++ +++       ++ N+  FG+    NL D+I K 
Sbjct: 451 FSEKTAEQLFEELD----IKSIPDLYRIKKE------ELLNLQRFGEKKAQNLIDAIEKS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L  FI++LGI +VG + +  L + + + Q                +  LI +  +G
Sbjct: 501 KNCDLPSFIYALGIPNVGKKTSIDLCRKFKTLQKLKSAT----------FHDLIAIEDIG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+A++I+EF+++   +  ++ LL+       + E    +    K +V TG+L    R +
Sbjct: 551 EIVAESIIEFFKDDTILKNIDELLELGVNPKFQEENIQENIFNGKTVVVTGSLNSFSRSE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +E +  LGA V++ +S+KTD +IVG +PGSK +KA +L VKI++EE+F  ++
Sbjct: 611 IKEKLQSLGAKVASSVSKKTDYVIVGKDPGSKYKKAVELNVKIIDEEKFKNMI 663


>gi|170756080|ref|YP_001782894.1| NAD-dependent DNA ligase LigA [Clostridium botulinum B1 str. Okra]
 gi|254781294|sp|B1ING1|DNLJ_CLOBK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169121292|gb|ACA45128.1| DNA ligase, NAD-dependent [Clostridium botulinum B1 str. Okra]
          Length = 664

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 204/714 (28%), Positives = 358/714 (50%), Gaps = 58/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++  L +E++ +   YY    P I D EYD        +            P  
Sbjct: 1   MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK----TEVTLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127
           P  ++G ++     K TH     SL+K  N+E L ++  R  +  ++ +         + 
Sbjct: 57  PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116

Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  +  +   +IE
Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNSH--VIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245
           V GE  ++K  F   N       + P  N RN A+G LR L+  +   R L+ F + +G 
Sbjct: 175 VHGEAIMTKTAFEEYNKAA----QVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EM+  ++ +G P +  +++      +      ++SIR  L YDIDG V  
Sbjct: 231 NEGPEFKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIV 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   ++ LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG
Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D IK            +++++G +VLV+R+ +VIP+++ ++      ++
Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVVEES-LEES 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 EEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+  D    I+  AD++ +++ +  +      +  F D    NL D+I   
Sbjct: 451 FSEKTAEQLFEKLD----IKSIADLYKIKKEELLT------LEKFKDKKSQNLIDAIQNS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L  FI++LGI +VG + A  L   + + ++            N     L+ VP VG
Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESI----------KNTTIEQLVEVPDVG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+A++I +F+++ + I  +E LL          E+   +   +K +V TG+L    R +
Sbjct: 551 EIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMDKTIVVTGSLNNYSRGE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ +  LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F   ++
Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664


>gi|224418026|ref|ZP_03656032.1| NAD-dependent DNA ligase LigA [Helicobacter canadensis MIT 98-5491]
 gi|253827358|ref|ZP_04870243.1| DNA ligase, NAD-dependent [Helicobacter canadensis MIT 98-5491]
 gi|313141565|ref|ZP_07803758.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter
           canadensis MIT 98-5491]
 gi|253510764|gb|EES89423.1| DNA ligase, NAD-dependent [Helicobacter canadensis MIT 98-5491]
 gi|313130596|gb|EFR48213.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter
           canadensis MIT 98-5491]
          Length = 650

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 229/704 (32%), Positives = 360/704 (51%), Gaps = 60/704 (8%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
                + ++     YY    PI  D EYDAL  +        P        + P  ++G 
Sbjct: 6   YLEAIKTLNLWAKHYYILDDPIASDEEYDALYHQIKEFEANNP---TQISKDSPTQRVGD 62

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
            +  S  K  H     SL+ I+N ++L+ +I R+ +      D ++ FT++PK DG  + 
Sbjct: 63  RILESFNKSEHIERMWSLDDIFNTQELQDWINRVSK------DENLNFTIDPKFDGASLN 116

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YE G    A  RGDG  GE+V+   + IP+IP  LS+   + IE+RGE  I+K+DF A
Sbjct: 117 LLYENGILQKATTRGDGFIGEEVTQNAKTIPSIP--LSIPYTDKIEIRGECVIAKDDFEA 174

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           +N E +  G   +ANPRNAA+G LR+L+      R L F   G+G   +I  +  + +++
Sbjct: 175 INQERLENGEALFANPRNAAAGSLRQLDSKITSKRKLQFIPWGVGF-CQINEESFFALME 233

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           K+R  GF  +   +  +    I   Y  + S R + P  +DG+V +VD   LQK LG   
Sbjct: 234 KIRSFGFIASPFSKLCSNLQAIEDSYQNLISKRDSYPITLDGMVIRVDNIPLQKSLGFTI 293

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           ++PR+  ++KF   +   ++LDI +Q+GRTG++TPVA LEPV I GA ++ ATLHN D I
Sbjct: 294 KAPRFACAYKFPAIEKKAKILDIVLQVGRTGVITPVAILEPVMIEGAKVSRATLHNFDEI 353

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           K            +DI + D V++ R+G+VIPK++  +   R    +    P+ CPIC S
Sbjct: 354 KK-----------KDILINDSVILIRSGDVIPKIIKSLPTLRDGTQKQCKMPTHCPICNS 402

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            ++ +                 L C A+    L HF+S+ A NI+GLGK+ +D  F+   
Sbjct: 403 ELLIEEKLIK---------CQNLNCKARVKNSLIHFISKKALNIDGLGKRIIDLLFE--- 450

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               I    DIF+LQ          E + GF D  + NL ++I + + I L RFI +LGI
Sbjct: 451 -LGKITKIEDIFSLQYEDL------EGLEGFKDKKIHNLLNAIKQAKGIDLWRFINALGI 503

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
            H+G   ++ LA  + +               +  +   + +   G+ +A ++VEF    
Sbjct: 504 EHIGEGASKKLANTFGN------------DFYHKSFEDFVVLDGFGEEMANSLVEFCHV- 550

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
            N   +  LL  + P   +   N +  + N+  V TGTL + +R   QE +  LGA VS+
Sbjct: 551 -NQERINHLLAILQPKCNQSTTNAN--LSNQTFVITGTLSQ-KREVYQEILESLGAKVSS 606

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            +S+KT+ ++ G+  GSKL KAQ+LGVK+++EE F  L+Q+   
Sbjct: 607 SVSKKTNFLLCGEEAGSKLTKAQELGVKVISEEDFWNLIQETKK 650


>gi|237743296|ref|ZP_04573777.1| NAD-dependent DNA ligase [Fusobacterium sp. 7_1]
 gi|229433075|gb|EEO43287.1| NAD-dependent DNA ligase [Fusobacterium sp. 7_1]
          Length = 696

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 215/711 (30%), Positives = 363/711 (51%), Gaps = 50/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L ++++ + D YY  +K +I D E+D L +  +++   +P        + P   +
Sbjct: 29  EKIVKLREDLNKYRDSYYNDNKSLISDYEFDILLKELESLEEKYPQYKEI---SSPTTSV 85

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G  +      KV H  P LSL   +NI ++  FI RI +   K+    + + LE K+DG 
Sbjct: 86  GASLKENKFKKVEHIHPMLSLANSYNIGEIVDFIERIKKKISKE--QELKYCLEVKLDGL 143

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV +    
Sbjct: 144 SISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIVKTLPQAI--DMEIRGEVVLPLAS 201

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E +  G + +ANPRNAASG LR+L+   +    L+ + + L +  ++  K   E
Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKERGLDAYFYFLVEADKLGFKSHSE 261

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  +G           T   I    +  +  R  LPY+ DGLV KVDE +L  ++G
Sbjct: 262 SIKFLESMGIKTTGIFELLETSKEIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIG 321

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF   Q ST L  +  Q+GRTG LTPVA L+ V + G+ +  A+LHN 
Sbjct: 322 FTSKTPRWAIAYKFPAHQVSTVLNGVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNI 381

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+GDRV +++A E+IP++V  I  +R  + +    P  CP+
Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQIVKSIKEDRTGNEKIIEEPVNCPV 430

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++ R+      K            C A+    +++FVSRDA NI GLG + ++ F  
Sbjct: 431 CNHKLEREEGLVDIK-------CVNEECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DI+ L+  ++     +ENI   G  S+ NL +SI + +N   ++ I++
Sbjct: 484 ----LGYIKTVVDIYDLKNHRE----ALENIDKMGKRSIENLLNSIEESKNRDYDKVIYA 535

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   ++ LAK   +                  +  L  +  +G+I A  I+ F+
Sbjct: 536 LGIAEIGKVTSKILAKASKNIDKLM----------TMTFEELTSIDGIGEIAANEIIAFF 585

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
              +N   ++ L ++      +  +    N++     K  +FTGTL+   R + +E + +
Sbjct: 586 AKEKNQKIIQGLKEKGLKFEIKESETNTQNINPNFAGKNFLFTGTLKHFTREQIKEEIEK 645

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|237753058|ref|ZP_04583538.1| NAD-dependent DNA ligase LigA [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375325|gb|EEO25416.1| NAD-dependent DNA ligase LigA [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 666

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 224/721 (31%), Positives = 354/721 (49%), Gaps = 69/721 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +          + ++     YY    PI  D EYD L  +  A     P        
Sbjct: 1   MTQDS----YLQAIKTLNLWAKHYYVLDDPIASDEEYDLLYHKVLAYEAQNPQFIAQ--- 53

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G ++     K TH     SLE ++N  + +++I R  R      D  + F++ 
Sbjct: 54  DSPTQRVGDKVLEGFNKHTHLKRMWSLEDVFNETETQEWILRAKRGLGLLSDAPLIFSVS 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK DG  + + YE G    AA RGD   GE+V+   R IP+IP  LS+     IE+RGE 
Sbjct: 114 PKFDGASLNLLYEDGILKCAATRGDAFIGENVTQNARTIPSIP--LSIAYKGRIEIRGEC 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            I K+DF ALN E    G   +ANPRN A+G LR+L+     +R L F   G+G+     
Sbjct: 172 VIGKDDFEALNLERQNKGETLFANPRNCAAGSLRQLDSKITASRKLQFIPWGVGECDTKD 231

Query: 251 AKG------------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
                           + +++ +  LGF           +  I + Y  +   R      
Sbjct: 232 FMDFASKEKTRNPNSFFALMEGIYALGFQKPPFTELCTNYDSIHTAYQTLLKAREDYAIM 291

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           +DG+V  VD F LQ++LG   ++PR+  ++KF   +   ++L I +Q+GRTG++TPVA L
Sbjct: 292 LDGMVLCVDAFDLQEKLGFTIKAPRFACAYKFPALEKRAKILSITLQVGRTGVITPVAEL 351

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + GA I+ ATLHN D I             +DI++ D V++ R+G+VIPK++  + 
Sbjct: 352 EPVLLEGAKISRATLHNFDEIHK-----------KDIQINDFVVLIRSGDVIPKIIKSLP 400

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             R     P + P+ CPIC S ++ +                 L C A+    + HF S+
Sbjct: 401 KLRDGTQYPCATPTQCPICNSTLLIEEKLIK---------CQNLNCPARVKNSITHFASK 451

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A NI+GLG++ ++  F+ +     I+   DIFTL+         +E + GF +  + NL
Sbjct: 452 KALNIDGLGEKIVELLFECKK----IQSIEDIFTLKAND------LEGLEGFKEKKINNL 501

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            ++I K + + L RFI +LGI H+G   ++ LA  Y             +      +   
Sbjct: 502 IEAILKVKGVELWRFINALGIEHIGEGASKKLANAYG------------LEFYKKSYADF 549

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
           I +   G  +A+++VEF     N   +  LL+ ++P+     + + S+I  K  V TGTL
Sbjct: 550 IALDGFGGEMAESLVEFCTV--NQTRLLRLLEYIAPTCN--TQVLESKISGKTFVITGTL 605

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            K +R + QE +  LGA VS  +S+KTD ++ G++ GSKL KA++LGVKI+N E+   LL
Sbjct: 606 PK-KREEYQELLESLGAKVSGSVSKKTDFLLCGEDAGSKLTKAKELGVKIINVEELQALL 664

Query: 719 Q 719
           +
Sbjct: 665 E 665


>gi|297623824|ref|YP_003705258.1| DNA ligase, NAD-dependent [Truepera radiovictrix DSM 17093]
 gi|297165004|gb|ADI14715.1| DNA ligase, NAD-dependent [Truepera radiovictrix DSM 17093]
          Length = 681

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 228/686 (33%), Positives = 346/686 (50%), Gaps = 55/686 (8%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
             +  YY    P + D+E+D L      +    P+L     P+ P  ++G     S   V
Sbjct: 20  EANYRYYVLQDPELSDAEWDRLFHELKRLEETHPEL---RTPDSPTQRVGAPPQASFAAV 76

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H  P LSL+  +++  L +F  R+ R      D  I +  E KIDG  I + YE G  V
Sbjct: 77  RHPHPMLSLDNAFDLAGLEEFEARLKRVL--ATDEEIAYLAELKIDGLSINLLYEGGVLV 134

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLS------LNIPEIIEVRGEVYISKNDFLALND 203
           +AA RGDG +GEDV+  +  +P +P+ L         +PE++EVRGE+Y+S+ +F  +N+
Sbjct: 135 WAATRGDGVTGEDVTFNVLGVPGLPQRLPEALPGGGRVPEVLEVRGELYLSRAEFRRINE 194

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262
           E  A G  P+ NPRNAASG +R+L+P     R L  F +G+ +   +  + Q E+L  + 
Sbjct: 195 ERAAAGEPPFKNPRNAASGTIRQLDPRVSAGRKLQVFFYGVAEPRALGVRTQSELLDWLA 254

Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
             GF  N    +A     +        ++RSTL Y+ DG+V KVDE +L  +LG  AR+P
Sbjct: 255 AAGFRTNPLRARARGIAALEPLIARWTALRSTLDYEADGVVVKVDELALHDELGSTARAP 314

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           RW +++KF  ++  T LL + + +GRTG +TPVA LEP  I G  ++ ATLHN  +I  L
Sbjct: 315 RWAVAYKFPAEEVETTLLGVSLGVGRTGKITPVAELEPRLIEGTEVSRATLHNPGFIAAL 374

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                      D+RVGDRV+V ++G +IP+V+ ++   R  +  P+ FP  CP C     
Sbjct: 375 -----------DLRVGDRVMVHKSGGIIPEVIRVLTEARTAELPPYVFPETCPAC----- 418

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
                   +  A  RC   LAC AQ L RL H+ SR A +I GL  + L           
Sbjct: 419 ---GEALIEDGANVRCVN-LACPAQVLARLSHYASRGAMDIAGLSTKTLQKLLDK----G 470

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            IR   D++ L   Q         + GFG+ S  NL  +I + +   LER + +LG+ HV
Sbjct: 471 LIRTIPDLYDLTPEQL------TPLEGFGERSAQNLVAAIARSKTQPLERLLVALGLPHV 524

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           GA  A+ LA+ + S +         +A            P VG+  A+A+ +  Q P   
Sbjct: 525 GARTAQLLARAFGSLEALQAADTADLAAL----------PEVGETTARAVHDALQQPALR 574

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             +  L            +  S  ++    V TGTL +  R + +E +  LGA V++ +S
Sbjct: 575 ALIGELRARGVGGGAAAPR--SDRLKGLTFVLTGTLSE-PRDRLKERLEALGARVASSVS 631

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKI 708
           +KT  ++ G++PGSKL+KA+ LGV +
Sbjct: 632 KKTSFVVAGEDPGSKLDKARALGVPV 657


>gi|170761523|ref|YP_001788587.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A3 str. Loch
           Maree]
 gi|254781295|sp|B1L1H3|DNLJ_CLOBM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169408512|gb|ACA56923.1| DNA ligase, NAD-dependent [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 664

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 207/714 (28%), Positives = 357/714 (50%), Gaps = 58/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++  L +E++ +   YY    P I D EYD        +            P  
Sbjct: 1   MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK----TEVTLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127
           P  ++G ++     K TH     SL+K  N+E L ++  R  +  ++ +         + 
Sbjct: 57  PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116

Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  +  N   IIE
Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNNH--IIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245
           V GE  ++K  F   N       + P  N RN A+G LR L+  +   R L+ F + +G 
Sbjct: 175 VHGEAIMTKTAFEEYNKAA----QVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EM+  +R +G P +  +++      +      ++SIR  L YDIDG V  
Sbjct: 231 NEGSEFKNYREMMNFIRNMGLPQDKYIKECTNMEEVEKEIEYIESIREELDYDIDGAVIV 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   ++ LG   + P+W I++KF  K+ +TRLLD++  +GR+G +TP A LEPV +GG
Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTRLLDVEWNVGRSGRVTPTALLEPVELGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D IK            +++++G +VLV+R+ +VIP+++ +       ++
Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVAEES-LEES 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 KEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+  D    I+  AD++ +++ +  +      +  F D    NL ++I   
Sbjct: 451 FSEKTAEQLFEKLD----IKSIADLYKIKKEELLT------LEKFKDKKSQNLINAIQNS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L  FI++LGI +VG + A  L   + + ++            N     L+ VP VG
Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESI----------KNTTIEQLVEVPDVG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+A++I +F+++ + I  +E LL          E+   +   +K +V TG+L    R +
Sbjct: 551 EIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMDKTIVVTGSLNNYSRGE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ +  LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F   ++
Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664


>gi|261380488|ref|ZP_05985061.1| DNA ligase, NAD-dependent [Neisseria subflava NJ9703]
 gi|284796739|gb|EFC52086.1| DNA ligase, NAD-dependent [Neisseria subflava NJ9703]
          Length = 822

 Score =  463 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 239/834 (28%), Positives = 368/834 (44%), Gaps = 170/834 (20%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 5   AQRIKYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIFF 128
           +GGE      +V H +P LSL   ++ +         ++  F  R+             +
Sbjct: 62  VGGEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRGGLN---GEKPEY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187
            +EPK DG  I++ Y  G    AA RGDG +GEDV+  ++ +  IP  L     PE+IE+
Sbjct: 119 VIEPKFDGLAISLLYRDGVLTQAATRGDGTTGEDVTQNVKTVSNIPLRLYGENIPELIEI 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246
           RGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + + 
Sbjct: 179 RGEVLMLKADFAALNARQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQ 238

Query: 247 SE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVY 304
                A+   + L   + LGF + +G          V  + E    +    PY+IDG+V 
Sbjct: 239 QGGFIAEEHLQELGYCKELGFSLPDGNFGCFPNINEVLAFYEQMQQKRPTLPYEIDGMVV 298

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIGRTG +TPVARL+PV +G
Sbjct: 299 KVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVG 358

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV +I   R   
Sbjct: 359 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQ 407

Query: 425 AQPFSF---------------------------PSFCPICQSRVVRDLNPKTGKLVAAHR 457
               S                            P+ CPIC S + R+         A  R
Sbjct: 408 ESNISVSDGLQDDLFAETPSETRAEPLHKPYRLPTHCPICHSEIEREEGE------AVAR 461

Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ 517
           C+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++ L    
Sbjct: 462 CSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQLVTQD----LVRHFADLYRLDIPT 517

Query: 518 QTSTTKIENI-----------------------------LGFGDVSVTNLYDSINKRRNI 548
                +  +                                       N+   I   +  
Sbjct: 518 LQKMKETADKASVNEEEPSNSEIEDFENESGNALLSKTSKKQPTKWAENILAGIEASKTP 577

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------------------- 589
            L RF+F+LGIRHVG   A++LA+ + +  N       I+A                   
Sbjct: 578 ELARFLFALGIRHVGERTAKTLAQAFGTLGNVRHAPEPILACLPDIGTVVAHSIAHFFAQ 637

Query: 590 -HNNDDWLSLIRV--------------------------PL--VGDIIAQAIVE------ 614
                    L+ V                          P   + +  A A+ E      
Sbjct: 638 EAQQAMIDELLAVGVALQSQAVTIPPLRHAEPQRWIARLPDFKISETKALALWELAGQSI 697

Query: 615 ---------------FYQNPRNICAVEALLKEVSPSIGRHEKN-----VSSEIENKKLVF 654
                          +   P+N   +E +    + ++ + +       ++  I  K  V 
Sbjct: 698 EGLQSDKALPADWQTWRSKPQNAALLENMKTFFAQTLSKLQDETISDGINETIAGKTFVL 757

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
           TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKAQ LGV +
Sbjct: 758 TGTLPTLKRDQAQAMIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKAQTLGVAV 811


>gi|238917130|ref|YP_002930647.1| DNA ligase (NAD+) [Eubacterium eligens ATCC 27750]
 gi|238872490|gb|ACR72200.1| DNA ligase (NAD+) [Eubacterium eligens ATCC 27750]
          Length = 669

 Score =  463 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 200/714 (28%), Positives = 340/714 (47%), Gaps = 62/714 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E S L++ I YH D YY   +P I D EYD L  R   I    P+   S   + P  KI
Sbjct: 5   QEYSELKKTIDYHMDRYYNQDEPEISDYEYDKLMIRLKEIEKEHPEWVTS---DSPSQKI 61

Query: 79  GGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           GG +   +  KVTH++P LS+E +++ + +  ++ +++            F++E KIDG 
Sbjct: 62  GGTVKREAGVKVTHNVPMLSIEDVFSEDAVCAWVDKVH-----AMHPDCTFSVETKIDGL 116

Query: 138 MITIRYE---KGKFVY--AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
            +++RY     GK     A  RGDG  GEDV+A  R +  + + +     + +E+RGEVY
Sbjct: 117 SMSLRYVKEADGKLHLHLAETRGDGLIGEDVTANARVVGDVLQ-VIDLPYDSLELRGEVY 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           +S  DF   N+E   + +K  ANPRN A+G LR+L+ +    R L  F+  +    +   
Sbjct: 176 MSHEDFEKYNEEQERLEKKTAANPRNLAAGTLRQLDTSITKKRGLKIFIFNVQDGPDEIM 235

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           +     +  ++  G PV    +   T   +V   +E+  +R  LPYDIDG V K+D  + 
Sbjct: 236 ESHGRGMDILKAAGVPVVYH-KICKTKEEVVRAIDEIGRMREELPYDIDGAVVKIDHIAF 294

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE------PVNIGG 365
           +++    ++     I++K+  ++    + DI + +GRTG LT            P  + G
Sbjct: 295 RQEFPAGSKYSSGHIAYKYPPEEKVIVMDDILVDVGRTGKLTFTGIFHDPETGKPARLCG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ ATLHN+DYI  +           ++ +G    + ++GE+IPK+   +        
Sbjct: 355 TSVSRATLHNQDYITQM-----------NVGIGGEYKLFKSGEIIPKLNGCVKAP----E 399

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
             F  P  CP+C   ++R+ +       A  RC    +C+AQ    + +F S D  NI G
Sbjct: 400 HVFEAPKVCPVCGEPLIREED------TADIRCVNP-SCAAQLSRTVAYFTSLDCMNIMG 452

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG+  +D   K       I   ADI+ L+  +     K        + +   L  +I K 
Sbjct: 453 LGETLVDALIKD----GYIHNYADIYALKEHRDELIEKGII---GKEKNTDKLLAAIEKS 505

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  + +R + +LGIR+VG   A+ +  YY +    A                L  +P +G
Sbjct: 506 KENTPDRLLTALGIRNVGKNTAKQIMNYYDNLMELADAGE----------EELQNIPDIG 555

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
              A+ I +F+ +  NI  +E L +         +K +S ++E K +V TG+     R  
Sbjct: 556 ATTAKCIHDFFHDEANIELLERLKQSGLNMQMPEKKEMSDKLEGKTIVVTGSFDNYSRKD 615

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +E +   G   +  +S+KTD ++ G+  GSKL+KA  LGVK++  ++F+ +++
Sbjct: 616 MEELIVSNGGKATGSVSKKTDYLVAGEAAGSKLDKANSLGVKVLTIDEFMEMIK 669


>gi|258651684|ref|YP_003200840.1| DNA ligase, NAD-dependent [Nakamurella multipartita DSM 44233]
 gi|258554909|gb|ACV77851.1| DNA ligase, NAD-dependent [Nakamurella multipartita DSM 44233]
          Length = 736

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 212/727 (29%), Positives = 342/727 (47%), Gaps = 63/727 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A    + L Q I+     YY    P + D E+D + R  D +   +P L     P+ P 
Sbjct: 22  EAAHRHAELTQIITDAQFRYYVLDAPTMSDGEFDTVLRELDGLEEQYPSL---RTPDSPT 78

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG        V H+   LSL+ +++ ++L  ++ R  R         + +  E KID
Sbjct: 79  QRVGGGFATEFGAVEHAERLLSLDNVFSADELAGWLARTAR----DAGTPVSWLTELKID 134

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEV 191
           G  + + YE+G+ + AA RGDG  GEDV+  +R I  +P  L  +    +PE +E+RGEV
Sbjct: 135 GLAVNLTYERGRLIRAATRGDGRVGEDVTLNVRTIAAVPERLRDDGAHDVPEFVEIRGEV 194

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           +     F  LN  ++A G+ P+ANPRN+A+G LR+ +P    +R L    HG+G      
Sbjct: 195 FFPLEAFEELNASLVAAGKAPFANPRNSAAGSLRQKDPRVTASRRLTMLCHGIGARVGFD 254

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q +   ++R  G P+++  +   T   +          R  L +DIDGLV KVDE +
Sbjct: 255 ITRQSQAYDRLRSWGLPISDHNQVVQTEQEVADRIAYWAEHRHDLSHDIDGLVVKVDEVA 314

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           +Q++LG  +R+PRW I++K+  ++A+T L DI + +GRTG +TP A LEPV I G+ +  
Sbjct: 315 VQRRLGSTSRAPRWAIAYKYPPEEATTLLRDIQVNVGRTGRVTPFAVLEPVLIAGSTVGM 374

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QPFS 429
           ATLHN+D ++            + +++GD V+V++AG+VIP+++  +V+ R     + F 
Sbjct: 375 ATLHNQDEVRR-----------KGVQIGDTVVVRKAGDVIPEILGPVVDLREGRTLREFV 423

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP C + +         +     RC    +C AQ  ER+ H   R AF+IEG+G +
Sbjct: 424 MPTHCPECGTALA-----PAKENDVDIRCPNSRSCPAQLRERVFHLAGRGAFDIEGMGYE 478

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
                  +   A +I    DIF L   +           G    +   L  ++   ++  
Sbjct: 479 A----AVALLAAGAITDEGDIFDLDEDRLLGVPLFTTKAGALSANGRKLLANLQICKDQP 534

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R + +L IRHVG   AR+LA+ + S           +A              VG  IA
Sbjct: 535 LWRVLVALSIRHVGPTAARALAQQFGSLPAIRAAAQEELAAAE----------GVGPTIA 584

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            A++E++    +   V+                    +    +V TG L    R +A+  
Sbjct: 585 DAVIEWFTVDWHRQIVDKWAAAGVRMQDEITDRPEQTLAGLSVVVTGGLDGFSRDEAKAA 644

Query: 670 VTQLGAVVSAILSRK----------TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +   G                    T  ++VGD+PGSK +KA  LGV I++E  F  LL+
Sbjct: 645 LLSRG----------AKAAASVSAKTAFVVVGDSPGSKYDKALGLGVPILDEAGFRVLLE 694

Query: 720 QYNTTLR 726
           +     R
Sbjct: 695 RGPDAAR 701


>gi|58584805|ref|YP_198378.1| NAD-dependent DNA ligase, Lig [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|75497767|sp|Q5GS88|DNLJ_WOLTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|58419121|gb|AAW71136.1| NAD-dependent DNA ligase, Lig [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 683

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 263/720 (36%), Positives = 397/720 (55%), Gaps = 57/720 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
            +E+  +E + L  +ISYHD  Y+Q SKP I D+EYD LK++   +    P    ++D  
Sbjct: 3   DLEKMIEEFTKLRDQISYHDVLYHQKSKPEIADAEYDKLKQKLVEMEGQLPGACVTQDG- 61

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
                +G   +    K+ H  P LSLE  ++ + + +F++RI RF  ++    I    EP
Sbjct: 62  -----VGAAPDEKFSKIKHREPMLSLENAYDEQGVERFLSRIKRFLIEE---EIEVFCEP 113

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG   +  YE G+FV AA RGDG  GEDV+  +  I   PR L     + +EVRGE+Y
Sbjct: 114 KIDGLSFSAVYEDGRFVKAATRGDGFIGEDVTRNVATIKGFPRFLQDV-QDRLEVRGEIY 172

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           I+ +DFL LN          +ANPRNAA+G L++L+ +          +          K
Sbjct: 173 INNSDFLKLNK------DNEFANPRNAAAGSLKQLDVSITANRP--LKYFAYSLIGGKEK 224

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E+L ++  LGF VN      N   G++ +YN++ + R +L YDIDG+VYKV++  LQ
Sbjct: 225 SQSEVLNRLESLGFCVNEHRSLTNNLSGMLEFYNKVYNCRYSLDYDIDGIVYKVNDLILQ 284

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LG   ++PR  +++KF+   A T+L  I IQ+GRTG+LTPVA L PVNIGG L++ A 
Sbjct: 285 SRLGSTHKAPRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLIPVNIGGVLVSRAN 344

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+D IK            +D+R GD V +KRAG+VIP++V +    RH DA  F FP 
Sbjct: 345 LHNQDEIKR-----------KDVREGDIVTIKRAGDVIPQIVRVDKGSRHADAPGFVFPE 393

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C  +V  +         AA RC+  L C AQ + +L HFVS+ AF+I GLG++Q+ 
Sbjct: 394 ICPECGGKVQAE--------GAAIRCSEELTCKAQIIGKLSHFVSKGAFDIFGLGEKQIK 445

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
           FF+        I+   DIF L+ R    + K +    +G+ S+ NL ++I  RR I+L+R
Sbjct: 446 FFYD----LGLIKQIPDIFNLEERLNEFSLKEQ--PDWGERSIANLLNAIQNRRVITLDR 499

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND-------------DWLSLI 599
           FIFSLGIR +G   A  LA YY+SY N+   +  +++++ +                 L+
Sbjct: 500 FIFSLGIRFIGQVAAELLANYYVSYNNWYNSMIKLLSNDAEVGVGGVEKKIAKSFSDELV 559

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            +  +G+ +A+++  F+    NI  ++ L   +         + S     K +VFTG L 
Sbjct: 560 GIDGIGEKVAESLKSFFSKEHNIKMLKDLTDYLQILSVNSNSSNSVLNN-KVIVFTGKLL 618

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + R +A+     LGA VS+ LS K D ++ G+ PG+K +KA +LGV I+NE+Q+  ++ 
Sbjct: 619 TMSRGEAKVRAKALGAKVSSNLSAKIDYLVAGEKPGNKYKKAVELGVGILNEDQWYRMIN 678


>gi|322807581|emb|CBZ05156.1| DNA ligase [Clostridium botulinum H04402 065]
          Length = 664

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 204/714 (28%), Positives = 358/714 (50%), Gaps = 58/714 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   +++  L +E++ +   YY    P I D EYD        +            P  
Sbjct: 1   MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK----TEVTLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127
           P  ++G ++     K TH     SL+K  N+E L ++  R  +  ++ +         + 
Sbjct: 57  PTQRVGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELR 116

Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  +   Y E G  + +A RG G  GED++A I+ I T+P  +  +   +IE
Sbjct: 117 YIVTKKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNDH--VIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245
           V GE  ++K  F   N       + P  N RN A+G LR L+  +   R L+ F + +G 
Sbjct: 175 VHGEAIMTKTAFEEYNKAA----QVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EM+  ++ +G P +  +++      +      ++SIR  L YDIDG V  
Sbjct: 231 NEGPEFKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIV 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   ++ LG   + P+W I++KF  K+ +T+LLD++  +GR+G +TP A LEPV +GG
Sbjct: 291 VDDIKTREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D IK            +++++G +VLV+R+ +VIP+++ ++      ++
Sbjct: 351 VTVKRATLNNMDDIKR-----------KNVKLGAKVLVRRSNDVIPEIMGVVEES-LEES 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P  CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 EEIQAPDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+  D    I+  AD++ +++ +  +      +  F D    NL D+I   
Sbjct: 451 FSEKTAEQLFEKLD----IKSIADLYKIKKEELLT------LEKFKDKKSQNLIDAIQNS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N  L  FI++LGI +VG + A  L   + + ++            N     L+ VP VG
Sbjct: 501 KNCDLASFIYALGIPNVGKKTANDLVMKFKTLESI----------KNTTIEQLVEVPDVG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I+A++I +F+++ + I  +E LL          E+   +   +K +V TG+L    R +
Sbjct: 551 EIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMSKTIVVTGSLNNYSRGE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ +  LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F   ++
Sbjct: 611 IKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFSNKIK 664


>gi|304440548|ref|ZP_07400435.1| NAD-dependent DNA ligase LigA [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371026|gb|EFM24645.1| NAD-dependent DNA ligase LigA [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 650

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 205/696 (29%), Positives = 344/696 (49%), Gaps = 56/696 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L + ++ +   YY   +P++ D EYD L      +            P+ P N++
Sbjct: 3   KRIDELVELLNKYSYHYYTLDEPLVADVEYDRLYDELVKLEKE----TGYIRPDSPTNRV 58

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GGE+     K TH  P  S++K  + ++LR +  R  R         I + +E K DG  
Sbjct: 59  GGELLTGFVKHTHLSPLYSMDKAQSFDELRAWEERNMRLL--PGVKDIDYVVELKFDGLT 116

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I + Y  G    A+ RG+G  GE++   ++ I ++P  LS+    + EV+GE  +    F
Sbjct: 117 INLTYNNGILENASTRGNGLIGEEILPQVKTINSVP--LSIEYKGLFEVQGEGLMPFKAF 174

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
              N+       +   NPRNAA+G LR L+P     R L+ + + +G       K   EM
Sbjct: 175 NKYNETA----EEVLKNPRNAAAGALRNLDPKVTRKRNLDAYFYNVGYIEGREFKTDTEM 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
            + +R   F VN            +   N+++ +R +L   IDG   KVD++SL+++LG 
Sbjct: 231 KEFLREQKFKVNPIYYHVKNIDEAIECINKIEEMRDSLDVLIDGATIKVDDYSLRERLGY 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             + PRW +++K+  K+ +T+LLD+   +GRT  +TP A LEPV IGG  I  ATL+N D
Sbjct: 291 TNKFPRWAVAYKYEAKEVTTKLLDVIWNVGRTAKVTPSAILEPVEIGGVTIQRATLNNFD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            + +R+G RVL++R+ +VIP+++  + ++     +    P+ CP C
Sbjct: 351 DIQR-----------KKLRLGSRVLLRRSNDVIPEILGAVPSD--EKTEEIKLPTHCPYC 397

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +         K      C   L+C  Q + R+ HF SRDA NIEGL  +        
Sbjct: 398 GSELY--------KDGVHIFCPNTLSCLPQLIGRIVHFTSRDAMNIEGLSDKTAAVLISD 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
            D    I+  +D++ + +    S      + GF D    NL + + K ++++L  F+++L
Sbjct: 450 LD----IKEVSDLYDITKENLMS------LEGFKDKKSDNLLEQLEKSKDVNLSNFVYAL 499

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI +VG + AR LA ++ S +                   L+ +  VG I A  I EF+ 
Sbjct: 500 GIHNVGIKAARDLADHFKSLEGLMNATE----------EELVSIDDVGPITAHEIYEFFH 549

Query: 618 NPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           + R   +++ L+    +P      K+ +S     K+V TG L +  R + ++ +  LGA 
Sbjct: 550 DERIKDSIKKLIDHGITPKYVDVAKDSNSNFAGLKIVLTGKLSR-PRKEIEKELLSLGAE 608

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712
           V   +S+ TD++I+G+N GSK +KA++LG+KI++E+
Sbjct: 609 VVGSVSKNTDLVIIGENAGSKADKARELGIKIIDEK 644


>gi|317062114|ref|ZP_07926599.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185]
 gi|313687790|gb|EFS24625.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185]
          Length = 665

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 220/707 (31%), Positives = 348/707 (49%), Gaps = 50/707 (7%)

Query: 25  EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN- 83
             ++  ++  YY  ++ +I D EYD L      +   +P+         P   +G     
Sbjct: 2   RADLLKYNQYYYTNNESLISDVEYDMLMNELKELEEKYPEYK---SEASPTVIVGASNLR 58

Query: 84  -LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
                KVTH  P LSL   +N E++  FI RI R   +++D  I + LE K+DG  I+I+
Sbjct: 59  ENKFQKVTHKKPMLSLSNTYNEEEIGDFIDRIKRLLPERED--IKYALELKLDGLSISIQ 116

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           YEKGK V    RGDG  GEDV+  I  I TIP  L   +   +E+RGE+ +  + F +LN
Sbjct: 117 YEKGKLVRGVTRGDGAIGEDVTENIMEIETIPHTLKEPL--DMEIRGEIVLPISRFESLN 174

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQKM 261
           +  +  G + +ANPRNAASG LR+++ + I    L+ + + +        +   E ++ +
Sbjct: 175 ERRMEAGEEVFANPRNAASGTLRQIDASIIKERGLDCYFYFIVDAKNYGIQTHSESIKYL 234

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             LG          +T   +    +  +  +  L Y+ DG+V KVD   L  +LG   +S
Sbjct: 235 ESLGIKTTGVCEVLDTASALKKRIDYWEQEKEKLDYETDGMVIKVDNLDLWDELGNTTKS 294

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I++KF  KQ +T LL I  Q+GRTG +TPVA LE V + G+ +  A+LHN   I+ 
Sbjct: 295 PRWAIAYKFPAKQVTTTLLGITWQVGRTGKVTPVAELEEVALSGSKVKRASLHNFHEIER 354

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR+GD+V +++A E+IP+VV  I   R    +  + P  CP+C S V
Sbjct: 355 -----------KDIRIGDKVFIEKAAEIIPQVVKSIKEFRDGSEKMITEPDKCPVCGSPV 403

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            R+      K            C  +   R+++FVSRDA NI G G + ++   +     
Sbjct: 404 AREEGQVDIK-------CTNPVCPGKVKGRIEYFVSRDAMNIGGFGSKMVEKMLE----L 452

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             I+   DI+ L+  ++     +ENI   G  SV NL DSI   +     + I++LGI  
Sbjct: 453 SFIKNVGDIYDLKDHKE----DLENIEKMGKRSVENLLDSIEASKKRDYSKVIYALGIPF 508

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           +G    + LA+   +  N  +           +   LI +  +GD  A+A+ +F ++  N
Sbjct: 509 IGKYSGKLLAEASRNIDNLMK----------MEIEELIEIDGIGDKGAKAVYDFLRDEEN 558

Query: 622 ICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
           I  +  L              E         K  +FTGTL+  +R + +E + +LG    
Sbjct: 559 IELINILKGHGLQFAMEEKEEEDQSEKIFSGKTFLFTGTLKNFKREEIKEEIEKLGGKNL 618

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQYNTT 724
           + +S+  D +I+G+  GSKL+KAQ+LG VKI+ EE+F+ + +  N  
Sbjct: 619 SAVSKNLDYLIIGEKAGSKLKKAQELGTVKILTEEEFVEICKNNNKN 665


>gi|325510083|gb|ADZ21719.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum EA 2018]
          Length = 669

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 211/717 (29%), Positives = 357/717 (49%), Gaps = 59/717 (8%)

Query: 12  LSIEQA-RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ++ +++    +  L +E++ +   YY    PI+ D EYD        +            
Sbjct: 1   MNEKESNILRMQELIEELNKYSYSYYVLDNPIVADKEYDKRYDELVELEEK----TGITY 56

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------ 124
           P  P N++G  +     K TH     SL+K  + E++  +  R  +   + + N      
Sbjct: 57  PYSPTNRVGDVILKQFQKYTHKSRLWSLDKAQSFEEIIDWHNRNKKAVAEYNSNHEDKLP 116

Query: 125 SIFFTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
            + + L  K DG  I   Y E G  + AA RG G  GED+++  + I +IP  L +    
Sbjct: 117 ELKYVLTKKFDGLTINCTYDESGVMIKAATRGTGVIGEDITSQAKTIKSIP--LKIKNGS 174

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHG 242
           ++EV GE  ++K  F   N +       P  N RN A+G LR LN      R L+ F + 
Sbjct: 175 VVEVHGEAIMTKTAFNEYNKKA----EVPLKNLRNGAAGALRNLNVRETARRNLSAFFYD 230

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +G       K   EM+  ++ +GFPV+  +++ NT   I      +  IRS+L YDIDG+
Sbjct: 231 VGYNEGKAFKSYMEMMNFIKEMGFPVDEYLKECNTIEEINKEIQYVGDIRSSLDYDIDGV 290

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V  +D++  ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV 
Sbjct: 291 VIVIDDYRTREYLGYTVKFPKWAIAYKFEAEEATTKLLDVEWNVGRSGRVSPTAILEPVE 350

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G ++  ATL+N D I           G + +++G RV V+R+ +VIP+++ +      
Sbjct: 351 LAGVIVKRATLNNMDDI-----------GRKKVKIGSRVFVRRSNDVIPEIMGVTEETEG 399

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              +    P+ CP C S +V++             C   L+C  Q ++ + HF SR+A N
Sbjct: 400 ETNEI-EAPTICPYCGSEIVKE--------GVHLFCENTLSCKPQMVKSIVHFASREAMN 450

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEG  ++  +  F+      +I+  +D++ + + +  S      +  F D   +NL ++I
Sbjct: 451 IEGFSEKTAEQLFEK----LNIKSISDLYRITKEELMS------LDKFKDKKASNLINAI 500

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K +   L  F++SLGI +VG + A  L K + S++N  +            +  LI V 
Sbjct: 501 EKSKKCDLASFVYSLGIPNVGKKTATDLCKQFKSFENIKKA----------SYDELILVQ 550

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G I+A++IVEF++  +   ++  L +          + V +    K +V TGTLQ   
Sbjct: 551 DIGSIVAESIVEFFKQEKIEKSLNELFELGVTPFYEESEVVENAFTGKTVVATGTLQNYS 610

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R   +E +  LGA V+  +S+KTD +I G+N GSK +KA QLGVKI+ EE+F  L+ 
Sbjct: 611 RTAIKEKLESLGANVAGSVSKKTDYVIAGENAGSKYDKAVQLGVKILTEEEFEELIN 667


>gi|15895931|ref|NP_349280.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum ATCC 824]
 gi|81529669|sp|Q97FQ5|DNLJ2_CLOAB RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|15025704|gb|AAK80620.1|AE007765_2 NAD-dependent DNA ligase [Clostridium acetobutylicum ATCC 824]
          Length = 669

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 211/717 (29%), Positives = 357/717 (49%), Gaps = 59/717 (8%)

Query: 12  LSIEQA-RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ++ +++    +  L +E++ +   YY    PI+ D EYD        +            
Sbjct: 1   MNEKESNILRMQELIEELNKYSYSYYVLDNPIVADKEYDKRYDELVELEEK----TGITY 56

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------ 124
           P  P N++G  +     K TH     SL+K  + E++  +  R  +   + + N      
Sbjct: 57  PYSPTNRVGDVILKQFQKYTHKSRLWSLDKAQSFEEIIDWHNRNKKAVAEYNSNHEDKLP 116

Query: 125 SIFFTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
            + + L  K DG  I   Y E G  + AA RG G  GED+++  + I +IP  L +    
Sbjct: 117 ELKYVLTKKFDGLTINCTYDESGVMIKAATRGTGVIGEDITSQAKTIKSIP--LKIKNGS 174

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHG 242
           ++EV GE  ++K  F   N +       P  N RN A+G LR LN      R L+ F + 
Sbjct: 175 VVEVHGEAIMTKTAFNEYNKKA----EVPLKNLRNGAAGALRNLNVRETARRNLSAFFYD 230

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +G       K   EM+  ++ +GFPV+  +++ NT   I      +  IRS+L YDIDG+
Sbjct: 231 VGYNEGKAFKSYMEMMNFIKEMGFPVDEYLKECNTIEEINKEIQYVGDIRSSLDYDIDGV 290

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V  +D++  ++ LG   + P+W I++KF  ++A+T+LLD++  +GR+G ++P A LEPV 
Sbjct: 291 VIVIDDYRTREYLGYTVKFPKWAIAYKFEAEEATTKLLDVEWNVGRSGRVSPTAILEPVE 350

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G ++  ATL+N D I           G + +++G RV V+R+ +VIP+++ +      
Sbjct: 351 LAGVIVKRATLNNMDDI-----------GRKKVKIGSRVFVRRSNDVIPEIMGVTEETEG 399

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              +    P+ CP C S +V++             C   L+C  Q ++ + HF SR+A N
Sbjct: 400 ETNEI-EAPTICPYCGSEIVKE--------GVHLFCENTLSCKPQMVKSIVHFASREAMN 450

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEG  ++  +  F+      +I+  +D++ + + +  S      +  F D   +NL ++I
Sbjct: 451 IEGFSEKTAEQLFEK----LNIKSISDLYRITKEELMS------LDKFKDKKASNLINAI 500

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K +   L  F++SLGI +VG + A  L K + S++N  +            +  LI V 
Sbjct: 501 EKSKKCDLASFVYSLGIPNVGKKTATDLCKQFKSFENIKKA----------SYDELILVQ 550

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G I+A++IVEF++  +   ++  L +          + V +    K +V TGTLQ   
Sbjct: 551 DIGSIVAESIVEFFKQEKIEKSLNELFELGVTPFYEESEVVENAFTGKTVVATGTLQNYS 610

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R   +E +  LGA V+  +S+KTD +I G+N GSK +KA QLGVKI+ EE+F  L+ 
Sbjct: 611 RTAIKEKLESLGANVAGSVSKKTDYVIAGENAGSKYDKAVQLGVKILTEEEFEQLIN 667


>gi|256028750|ref|ZP_05442584.1| preprotein translocase subunit SecA [Fusobacterium sp. D11]
 gi|289766653|ref|ZP_06526031.1| NAD-dependent DNA ligase [Fusobacterium sp. D11]
 gi|289718208|gb|EFD82220.1| NAD-dependent DNA ligase [Fusobacterium sp. D11]
          Length = 696

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 219/711 (30%), Positives = 364/711 (51%), Gaps = 50/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L ++++ + D YY  +K +I D E+D L +  +++   +P        + P   +
Sbjct: 29  EKIVKLREDLNKYRDSYYNDNKSLISDYEFDILLKELESLEEKYPQYKEI---SSPTTSV 85

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G  +      KV H  P LSL   +NI ++  FI RI +   KK    + + LE K+DG 
Sbjct: 86  GASLKENKFKKVEHIHPMLSLANSYNIGEIVDFIERIKKKISKK--QELKYCLEVKLDGL 143

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV +    
Sbjct: 144 SISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIVKTLPQAI--DMEIRGEVVLPLAS 201

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E +  G + +ANPRNAASG LR+L+      R L+ + + L +  ++  K   E
Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKDRGLDAYFYFLVEADKLGFKSHSE 261

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  +G           T   I    +  +  R  LPY+ DGLV KVDE +L  ++G
Sbjct: 262 SIKFLESMGIKTTGIFELLETSKEIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIG 321

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF   Q ST L  +  Q+GRTG LTPVA L+ V + G+ +  A+LHN 
Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTVLNGVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNI 381

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+GDRV +++A E+IP+VV  I  +R  + +    P  CPI
Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKSIKEDRTGNEKIIEEPVNCPI 430

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++ R+      K            C A+    +++FVSRDA NI GLG + ++ F  
Sbjct: 431 CNHKLEREEGLVDIK-------CVNEECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DI+ L+  ++     +ENI   G  S+ NL +SI + +N   ++ I++
Sbjct: 484 ----LGYIKTVVDIYDLKNHRE----ALENIDKMGKKSIENLLNSIEESKNRDYDKVIYA 535

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   ++ LAK   +                  +  L  +  +G+I A  I+ F+
Sbjct: 536 LGIAEIGKVTSKILAKASKNIDKLM----------TMTFEELTSIDGIGEIAANEIIAFF 585

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           +  +N   ++ L ++      +  +    N++     K  +FTGTL+   R + +E + +
Sbjct: 586 KKEKNQKIIQGLKEKGLKFEIKESETNTQNINPNFAGKNFLFTGTLKHFTREQIKEEIEK 645

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|257463090|ref|ZP_05627491.1| NAD-dependent DNA ligase [Fusobacterium sp. D12]
 gi|317060689|ref|ZP_07925174.1| DNA ligase [Fusobacterium sp. D12]
 gi|313686365|gb|EFS23200.1| DNA ligase [Fusobacterium sp. D12]
          Length = 673

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 219/701 (31%), Positives = 351/701 (50%), Gaps = 48/701 (6%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L++++  + D YY  ++ +I D EYD L +  + +        +  D       +G  + 
Sbjct: 14  LQKKLRSYSDAYYSQNESLISDYEYDMLLKELETLEAE----LQIADETSITQTVGSSLK 69

Query: 84  L-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
                K  H  P LSL   + I ++  FI R  +     ++  +    E K+DG  I++ 
Sbjct: 70  NTKFKKTAHRTPMLSLSNTYQIGEVEDFILRAKKNLNITENLEMEM--EIKLDGLSISVI 127

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           YE+GK   A  RGDG  GEDV+  +  I TIP+ LS  +   IE+RGE+ +   +F  LN
Sbjct: 128 YEQGKLQRAVTRGDGVIGEDVTENVLQIETIPQELSEKL--DIEIRGEIVLPFTEFETLN 185

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
              IA G + +ANPRNAASG LR+L+P     R+L  + + +    +     Q E +  +
Sbjct: 186 QMRIAKGEEVFANPRNAASGTLRQLDPQIVKERHLAAYFYFIVNAEQYGIHSQKESISFL 245

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             L  P             + +  +     R  LPY+ DGLV K++  +  ++LG   +S
Sbjct: 246 EKLSLPTTKICEVFQNIRELEARISHWSVERENLPYETDGLVLKINHIAFWEKLGSTGKS 305

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW +++KF  KQ +T+LLDI  Q+GRTG +TPVA LE V + G+ +  A+LHN D I  
Sbjct: 306 PRWAVAYKFPAKQVTTKLLDITWQVGRTGKITPVAELEEVELSGSRVKRASLHNYDEI-- 363

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      +DIR+GD V +++A E+IP+V+  +  +R  + +    P  CPIC S +
Sbjct: 364 ---------LRKDIRIGDTVFIEKAAEIIPQVIKAVKQDRTGEEKEIKAPEHCPICHSLL 414

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            ++      K        G   C  +    +++FVSRD  NI GLG + L+ F +     
Sbjct: 415 EKEEGLVDLK-------CGNKHCPGKIQGEMEYFVSRDGMNISGLGGKILEKFLE----L 463

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             +    DI+ L+ +++    ++E +   G  S+ NL  SI + +N S E+ +++LGI  
Sbjct: 464 HYLEDVGDIYYLKEKKE----ELEQVEKMGKKSIENLLTSIEESKNASYEKVLYALGIPF 519

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG   A+ LAK   +                     L  +  +GD +A++IVEF+QN R 
Sbjct: 520 VGKVAAKLLAKESKNINQLQSMTE----------EDLKEIEGIGDKMARSIVEFFQNERK 569

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
              +E L K         +   +++ ++ K  + TGTL    R + QE + +LG    + 
Sbjct: 570 KELIEKLRKVGLRFEETDKDTTAAKFLQGKTFLVTGTLSHYTRAELQEEIEKLGGSNLSS 629

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720
           +S+K D +IVG+  GSKLEKA+ LG V I+ EE+FL   ++
Sbjct: 630 VSKKLDYLIVGEKAGSKLEKAKALGTVTILKEEEFLSFKEK 670


>gi|257452731|ref|ZP_05618030.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R]
 gi|317059272|ref|ZP_07923757.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R]
 gi|313684948|gb|EFS21783.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R]
          Length = 676

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 222/715 (31%), Positives = 357/715 (49%), Gaps = 50/715 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S ++       L++++  + D YY  ++ +I D EYD L +  + +        + E+ 
Sbjct: 2   ISKKEKENRREELQKKLQRYSDAYYSQNESLISDYEYDMLLKELEQLEKE----LQIENK 57

Query: 72  NGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           +    K+G  +      K TH  P LSL   + I ++  F+ R  +     D+  +    
Sbjct: 58  SSITQKVGSSLKNTKFQKTTHKTPMLSLSNTYEIGEIEDFLLRAKKNLNMTDNLEVEM-- 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  I+I YEKGK V A  RGDG  GEDV+  +  I +IP  LS      IE+RGE
Sbjct: 116 EIKLDGLSISIIYEKGKLVRAVTRGDGIVGEDVTENVLQIESIPHELSEAF--DIEIRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEI 249
           + +  ++F  LN   I  G + +ANPRNAASG LR+L+P     R+L  + + +    + 
Sbjct: 174 IVLPFSEFENLNKIRIEKGEEVFANPRNAASGTLRQLDPKIVKERHLAAYFYFIVNAEQY 233

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q E +  +  L  P             +    N   S R  LPY+ DGLV K+++ 
Sbjct: 234 GIHSQKESILFLEKLSLPTTKICEIFQDSSKLEDRINYWSSEREKLPYETDGLVLKINDI 293

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           SL ++LG   +SPRW +++KF  KQ +T+LLDI  Q+GRTG +TPVA LE V + G+ + 
Sbjct: 294 SLWEKLGSTGKSPRWAVAYKFPAKQVTTKLLDITWQVGRTGKITPVAELEEVELSGSRVK 353

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN D I             +DIR+GD V +++A E+IP+VV  +  +R    +   
Sbjct: 354 RASLHNYDEIVR-----------KDIRIGDTVFIEKAAEIIPQVVKAVKEDRTGKEKKIE 402

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CPIC+S + R+      K            C  +    +++FVSRD  NI GLG +
Sbjct: 403 APEHCPICESILEREEGLVDLK-------CINKHCPGKIQGEMEYFVSRDGMNISGLGGR 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+           +   +DI++L+ +++    ++E +   G  S+ NL  SI + +  S
Sbjct: 456 ILEKLLS----LHYLENVSDIYSLKEKRE----ELEQLDKMGKKSIENLLSSIEESKKTS 507

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            ++ +++LGI  VG   A+ LAK   +                     L ++  VG+ +A
Sbjct: 508 YDKVLYALGIPFVGKVAAKLLAKESKNILKLQTMTE----------EELQQIEGVGEKMA 557

Query: 610 QAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           ++IV+F+QN      ++ L+      +   G      +   + K  + TGTL K  R + 
Sbjct: 558 RSIVDFFQNETKKQLIQNLIDIGLCFTLKDGVEASTEAKIWQGKNFLVTGTLSKYTRAEL 617

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720
           QE + + G    + +++K D +IVG+  GSKLEKA+ LG V I+ EE+FL L ++
Sbjct: 618 QEDIEKSGGTNLSSVTKKLDYLIVGEKAGSKLEKAKALGSVTILTEEEFLALKEK 672


>gi|261414540|ref|YP_003248223.1| DNA ligase, NAD-dependent [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261370996|gb|ACX73741.1| DNA ligase, NAD-dependent [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326001|gb|ADL25202.1| DNA ligase (NAD+) [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 715

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 202/734 (27%), Positives = 346/734 (47%), Gaps = 61/734 (8%)

Query: 12  LSIEQA--RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +S ++   R     L++++      YY+     + D ++D   +  +A+   +P+L    
Sbjct: 1   MSEQKDIDRTRYFELKKQLEEASRLYYKDGVSPMSDQDFDFGLKEMEALEAKYPELRGKG 60

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIF 127
                  K+G ++     KV H++P LS+  +++ E++R+F+              +S  
Sbjct: 61  ---SLTQKVGSDLTNDFAKVAHAVPMLSIANVYSEEEMREFVKAAEEGLSSFVSRLSSKK 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--------- 178
           +  E KIDG  +++ YE G+   AA RGDG  G+DV+     I  IP             
Sbjct: 118 WICERKIDGVSLSVIYENGRLKQAATRGDGAQGDDVTLNALTIADIPEYFDAKKLKIDPS 177

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLN- 237
                  EVRGEVY+ +  F  LN++ I   +K + N RN  SG L+  +  +       
Sbjct: 178 EIPQGTFEVRGEVYMEREAFERLNEQFILENKKTFQNCRNTVSGSLKLKSVAECKTRPMR 237

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           FF + + +++        E L++++ LGF   N    A+T   I++   ++ + R +LP+
Sbjct: 238 FFAYHIPQSNNKT---HEENLKQLKRLGF-HTNDYWTADTVDEIMAISEKIGASRDSLPF 293

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+V K+++   Q++LG  ++SPRW I++KF  ++A T LL ++ Q+GRTG +TPVA 
Sbjct: 294 DIDGMVVKLNDLQQQRELGSTSKSPRWAIAYKFKAERAYTPLLSVEFQVGRTGAVTPVAN 353

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           L PV + G  +  ATLHN D +  L           D+  GD V V++ GE+IPK+ D+ 
Sbjct: 354 LAPVRLAGTTVKRATLHNFDEVARL-----------DLHYGDTVGVEKGGEIIPKITDVK 402

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
              R   A P   P  CP+C  ++         +          L C AQ     +HFVS
Sbjct: 403 RELRPAGASPVVAPEKCPVCGEQLTHIDGEVILR-------CENLHCKAQVQCLFEHFVS 455

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R+A NIE LG   +     +      I+   D++ L           E+       S  N
Sbjct: 456 REAMNIENLGPALIASLLAT----GKIKRIPDLYRLTLEDL------ESQERMAKKSAKN 505

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           ++D+I   +  SLE  +  LGIR VG   AR++AK++ + +                   
Sbjct: 506 VFDAIQASKQRSLENLLHGLGIRFVGRTSARNIAKHFRTLEKIRTAT----------VEE 555

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
           L  V  VG+ I +++ EF+  P     ++ L+    P+  +         + +  V TGT
Sbjct: 556 LQNVTDVGERIGKSVYEFFHTPLYTNEIDELVALGLPTEFKGVVKT--LFQGQTAVITGT 613

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L  + R +A++ + + G  VS  +S+KT  ++ G+  GSKL KA +LG+ + +E   +  
Sbjct: 614 LPNMDRDEARKLIEENGGKVSGSVSKKTSWVLAGEAAGSKLTKANELGIPVHDEAWLMAQ 673

Query: 718 LQQYNTTLRIHDDD 731
           +   + +    D++
Sbjct: 674 IANADESGDAPDEN 687


>gi|313673736|ref|YP_004051847.1| DNA ligase, nad-dependent [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940492|gb|ADR19684.1| DNA ligase, NAD-dependent [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 655

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 216/694 (31%), Positives = 372/694 (53%), Gaps = 57/694 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +   L +E+++H   YY  + P I D++YD L ++   I    P+      P+ P  +
Sbjct: 5   KTDYDRLVKELNHHCIRYYLLNDPAISDAKYDNLYKQLRKIEEEHPEWI---SPDSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G ++      + H     SL+ I++  +L  F +++Y+         I + +EPKIDG 
Sbjct: 62  VGFKVTSG-KTIKHLYKMFSLDNIYSEGELNDFFSKVYKVVGS----DIDYVVEPKIDGA 116

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            ++I YE G   YAA RGDG  GED++  I+ I  +P  +S      I +RGEVY+SK  
Sbjct: 117 AVSIVYEDGVLSYAASRGDGVEGEDITHNIKTIRELPVSISE--KNRIVLRGEVYLSKEQ 174

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N E    G   +ANPRNAA+G L+ L+P     R L+ F++ + +         ++
Sbjct: 175 FNKINRERKNAGESLFANPRNAAAGTLKILDPAITARRGLSIFIYSIEEGRRYD--NHFD 232

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+ ++ +GFP+N  +     +  I  Y ++++S+R  LPYDIDG V KV+++ ++  LG
Sbjct: 233 DLKWLKSIGFPINEHI-FVGKYKDIKGYIDKIESLRKNLPYDIDGAVVKVNKYEVRSILG 291

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
           E  + P+W I++K+  +Q +T L D+  Q+GRTGI+TPVA L+ VNI G+ ++ A+LHNE
Sbjct: 292 ETIKYPKWAIAYKYEAEQVTTILKDVIFQVGRTGIVTPVAVLDTVNISGSNVSRASLHNE 351

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D IK L            +++GD V V+++GE+IPKV+ ++   R    +   FPS CP 
Sbjct: 352 DEIKRL-----------GVKIGDTVFVEKSGEIIPKVIKVVPEFRTGGEKEIIFPSNCPS 400

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++         K+ A  +C   L C  +    + H+ SRDA +I GLG++ ++ F+ 
Sbjct: 401 CGDKLF--------KIDAYWKCLN-LDCPDRVKGSITHYASRDAMDIRGLGEKNVERFYD 451

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +R   DI+ L+     +      + GFG++S  NL  SI + +     R I++
Sbjct: 452 ----LGLLRSIPDIYRLEYDDLVN------LEGFGELSADNLLKSIEESKRREFYRLIYA 501

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  VG ++A++LA ++ S  +                  L+ +  +GD + ++I EF+
Sbjct: 502 LGIDGVGIKMAQTLALHFKSIDSIMAA----------SIDDLMDIYGIGDEVGRSIFEFF 551

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +  RNI  ++ L +     +   ++ +  ++     + TGTL K  R   ++ + + G  
Sbjct: 552 RERRNIEMLQFLRRVGVNMV--QKEVMGDKLSGVTFLITGTLSK-PRKFYEDIIIKNGGK 608

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           + + +S+  + +IVG+NPGSKLEKA+ LGV+++ 
Sbjct: 609 ILSGVSKNLNFLIVGENPGSKLEKAKSLGVEVIT 642


>gi|296110658|ref|YP_003621039.1| NAD-dependent DNA ligase [Leuconostoc kimchii IMSNU 11154]
 gi|295832189|gb|ADG40070.1| NAD-dependent DNA ligase [Leuconostoc kimchii IMSNU 11154]
          Length = 681

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 234/728 (32%), Positives = 386/728 (53%), Gaps = 53/728 (7%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
            +  PIE L+   A++E+++ ++ +  +   YY+   P++ D  YDAL  R   +  AFP
Sbjct: 3   PEFTPIEQLTTPMAQQEIANHQETLLQYGVAYYEQDAPLVEDYVYDALYARLVELEAAFP 62

Query: 64  DLARSEDPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
                 +P+ P  K+GG +    L KV H  P LSL  ++++E+L ++  R  +    + 
Sbjct: 63  QFI---NPDSPTQKVGGAITKSGLEKVVHPAPMLSLGDVFSLEELEEWDARTTKTLGFQS 119

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
                + LE KIDG  + + Y  GK + A+ RG+G  GEDV+A ++ I  IP++L+  + 
Sbjct: 120 ----AYNLELKIDGLAVALTYVDGKLIQASTRGNGMIGEDVTANVKMIKVIPQILNEPL- 174

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVH 241
             IEVRGE+Y+SK+ F  LN++    G  P+ANPRNAA+G LR+LN +    R L+ FV+
Sbjct: 175 -TIEVRGEIYMSKSSFATLNNQRETEGLAPFANPRNAAAGSLRQLNTSIMKQRQLSAFVY 233

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
              +   +    Q + L++   LG P ++          I  Y ++  + R  L Y IDG
Sbjct: 234 YTAEPDILGVTTQSQALERFHELGLPTDHHNHVILKMPDIADYISKYSADRDKLSYGIDG 293

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KV+E   Q  LG   + PRW I++KF  ++A T L DI+  +GRTG +TP A ++PV
Sbjct: 294 VVVKVNELDDQTDLGNTVKIPRWAIAYKFPPEEALTILRDIEWTVGRTGAVTPTAVMDPV 353

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  +  A+LHN DY+             + +R+GD V + +AG++IP++  +I+++R
Sbjct: 354 QLAGTTVQRASLHNPDYL-----------NDKGVRLGDTVTLHKAGDIIPEIGQVILSKR 402

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             ++QP++ P  CP C+S++V            A RC    ACSAQ  E L HF SR+A 
Sbjct: 403 PVNSQPYNIPLLCPACESKLVHLEGE------VALRCINP-ACSAQIQEGLAHFASRNAM 455

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NIEG+G + +    +    A  I   A I+ L   Q  +      +  F + SV+NL ++
Sbjct: 456 NIEGMGPRVIAQLLQ----AGFIEDVASIYRLNATQLHA------LDKFKEKSVSNLLNA 505

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I + ++ SLE+ +F LGIR VGA+ AR +A+ + +    A+               +  +
Sbjct: 506 IERSKDNSLEKLLFGLGIRMVGAKAARLIAEKFKTLSVIARAT----------VSEIANI 555

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQ 659
             +G+ IA+++V+++  P +   ++ L         +     + SS    KK+V TG L 
Sbjct: 556 DGIGETIARSLVQYFNMPESQQLLKELTAAGVNQSYLSEVVIDESSFFYGKKIVLTGKLS 615

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  R    +++   GA VS+ +S KTD++I G + GSKL KA +LG+ +  E Q +    
Sbjct: 616 ESNRSAVSKWLQNHGASVSSAVSSKTDLLIAGTDAGSKLAKANELGIAVWTESQLIA--A 673

Query: 720 QYNTTLRI 727
           Q    ++ 
Sbjct: 674 QKEEDIKK 681


>gi|254796855|ref|YP_003081692.1| DNA ligase, NAD-dependent [Neorickettsia risticii str. Illinois]
 gi|254590064|gb|ACT69426.1| DNA ligase, NAD-dependent [Neorickettsia risticii str. Illinois]
          Length = 670

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 250/702 (35%), Positives = 388/702 (55%), Gaps = 49/702 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A+KE+  L +++  H+  YYQ   P I D+EYD++K R   +  A P L          
Sbjct: 2   KAKKEIQELYEKLLRHNKKYYQDDSPEITDAEYDSIKGRYLKLLEANPSLGFPVV----- 56

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             IG   +    KV H  P LSL  I++ E+L ++I R  RF   K  N + F  EPKID
Sbjct: 57  --IGYPASEKFQKVKHLSPMLSLRNIFSEEELVEYIERTKRFLNLK--NELEFLCEPKID 112

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G   + RY  GK +  A RGDG  GE++   ++ I   P  +    P+++EVRGEV++  
Sbjct: 113 GVSFSARYINGKLLSCATRGDGKIGENIIDNMKVINGFPIEIVDV-PDLLEVRGEVFLDH 171

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
           + F  L           ++NPRNAA+G LR+LNP +IT+  N        +     + Q 
Sbjct: 172 DTFQTLE---------GFSNPRNAAAGSLRQLNP-EITKERNLQYFAYSISKIDGIEHQE 221

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++L  +   GF  N     ++    I+S+Y+ +   RS + YDIDGLVYKV+   L  +L
Sbjct: 222 DVLHFLSERGFMTNPLRLASSKVPEIMSFYDSVYRGRSQIKYDIDGLVYKVNNLKLHARL 281

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  + +PRW I+HKF   +  T L  I + +GRTGI+TPVA L+P+ IGG +I+ A+L+N
Sbjct: 282 GTLSDAPRWAIAHKFPSHRGKTILEKIKLSVGRTGIITPVAHLKPITIGGVVISRASLYN 341

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
           ED +             +DIR GD V V+RAG+VIPKV+++ ++ R  + + F FP  CP
Sbjct: 342 EDELAR-----------KDIREGDLVTVERAGDVIPKVLEVDISYRT-NQERFIFPDKCP 389

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S ++R  N       AA RC     C+ Q ++++KH VS  AF+I+G+G   + FF 
Sbjct: 390 SCSSTLIRKNNE------AAIRCNNRKKCTEQVIQQIKHLVSAQAFDIDGIGTSHISFFI 443

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           + E     I  PADIF L + +     +I+   G+G+ SV N+  SI K R ISLE+FIF
Sbjct: 444 EKE----FISEPADIFCLDKHRD----EIKKYDGWGEKSVDNILTSIEKSRKISLEKFIF 495

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           SLGI++VG + A  LA+ + S+ N+  ++ +I+  +      +  +  +G  + +++++F
Sbjct: 496 SLGIKNVGEKTAYMLAQQFKSFANWFDKM-SILKDDTQTENEIRNLDGMGSCVCESLLDF 554

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           + +P N   V++L   V   I  H  ++   +  KK VFTGTL  I R +A+E V + G 
Sbjct: 555 FSDPDNCNMVKSLSNHV--MITDHAISIGGPLSGKKFVFTGTLLSITREEAKEIVKKAGG 612

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           +V   +S++ D ++ G+  GSKL KA +LG+ I+ E+  +  
Sbjct: 613 IVLNSVSKQVDYVVAGEKAGSKLVKANELGIAIIEEKTLIEF 654


>gi|229828351|ref|ZP_04454420.1| hypothetical protein GCWU000342_00409 [Shuttleworthia satelles DSM
           14600]
 gi|229792945|gb|EEP29059.1| hypothetical protein GCWU000342_00409 [Shuttleworthia satelles DSM
           14600]
          Length = 675

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 194/719 (26%), Positives = 333/719 (46%), Gaps = 61/719 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E        L  +I+YH D YY   K  I D EYD L ++  A     PD  R   P
Sbjct: 1   MTFET----YQELIDQINYHMDLYYNQDKTEISDYEYDQLMQQLKAAEAEHPDWVR---P 53

Query: 72  NGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  KIGG     +  KV H++P LS+E +++ + +  ++ ++             F++
Sbjct: 54  DSPSQKIGGTTKREAGVKVEHNVPMLSIEDVFDFQSVIDWVKKVQEM-----HPDAIFSV 108

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E KIDG  +T+RY KG+   A  RGDGH GEDV+   RAIP +P  L +  P + E+RGE
Sbjct: 109 EQKIDGLSMTLRYRKGRLELAETRGDGHIGEDVTQNARAIPQVPDKLPITDPYL-ELRGE 167

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249
           VY++++ F A N       +   ANPRN A+G LR+L+P     R L  F+  +      
Sbjct: 168 VYMTRDRFEAYNARQEKDEKPLAANPRNLAAGTLRQLDPGITAKRGLALFIFNVQDGEPH 227

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           F + Q + L ++  +G PV    ++A+    +++   E+  +R  L YDIDG V K+D+ 
Sbjct: 228 FMRSQLDNLDRLSAMGLPVTYH-KRADNAKEVIAAIEEIGKMRDQLGYDIDGAVVKIDQI 286

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE------PVNI 363
           + +K     A+     I++K+  ++    +  I + +GRTG LT   +        P  +
Sbjct: 287 AYRKDFPAGAKYSAGHIAYKYPPEERVVEMDQILVDVGRTGKLTFTGQFHDVKTGGPARL 346

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ ATLHN+DYI+ +            I +G    + ++GE+IPK+   +   +  
Sbjct: 347 CGTSVSRATLHNQDYIRQM-----------KIGIGGHYKLFKSGEIIPKLNGCVKEPKA- 394

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
               F  P FCP+C   + ++         A  RC    +C AQ    + +F  R   +I
Sbjct: 395 ---VFKAPQFCPVCGEELEQEEG------TADIRCVNP-SCPAQISRTIAYFAGRSCMDI 444

Query: 484 EGLGKQQLDFFFKSEDPA---FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            GLG+  +D   + +      F +    DI+ L+  + +  ++        + +   +  
Sbjct: 445 AGLGQTLVDALCQEKITGSETFYLTSYVDIYRLREHRDSLISRGIL---GKEKNTDKILA 501

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I   ++    R +  LGIR+VG   A +L   Y    +               +  L  
Sbjct: 502 AIEDSKSQRPTRLLAGLGIRNVGLSTAAALMAVYPDLMDLMHA----------GFEDLQG 551

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +P +G+  A  IV F+ +      +              E+     +    +V TG L  
Sbjct: 552 IPDIGEKTAADIVHFFAHEDKRRMMADFRALGLTMRMPEEEKTE-ALAGLTIVVTGKLPG 610

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++R +A+  + + G   +  +S KTD ++ G+  GSKL+KA+ LG+ +++EE    L++
Sbjct: 611 MERSEAKALIEKNGGKCTGSVSGKTDYLLAGEAAGSKLDKAKSLGIPVIDEEGLKALIE 669


>gi|212550985|ref|YP_002309302.1| NAD-dependent DNA ligase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|254781545|sp|B6YRR9|DNLJ_AZOPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|212549223|dbj|BAG83891.1| NAD-dependent DNA ligase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 663

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 206/706 (29%), Positives = 345/706 (48%), Gaps = 48/706 (6%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++ +L QEI   +  YY   +PI+ D E+D   +  + +   +P+     D   P  
Sbjct: 3   IKQKIDNLRQEIDNWNYRYYVIYQPIVSDFEFDKKLKELEKLEAQYPEY---YDYYSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +IG ++N +  ++ H  P LSL   ++ E +  F  RI +      + +     E K DG
Sbjct: 60  RIGNDINNNFAQINHIYPMLSLSNTYSWEGINDFYNRIKKIL----NENFVIACELKYDG 115

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII-EVRGEVYISK 195
             I++ YE G  + A  RGDG +G+DV+  IR + +IP  L  N      E+RGE+    
Sbjct: 116 VSISLIYESGLLLRAVTRGDGTTGDDVTTNIRTVKSIPLKLYGNNYPRFFEIRGEIVFPW 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
             F  +N E I     P+ANPRNAA+G L+ LNP  +++              + +   Y
Sbjct: 176 AAFNKINKERIENSEPPFANPRNAAAGTLKTLNPQVVSQRNLDAYLYQLLGDNLSSDSHY 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E LQ  +  GF V+N ++   T   I ++ N     + +LP+ +DG+V KVD    Q  L
Sbjct: 236 ENLQLAQGWGFKVSNIIKCCKTIDEIENFINYWGKWKKSLPFAVDGVVLKVDSIRQQSLL 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW I++KF  +   T L  +D Q+GRTGI+TP+A LEPV + G ++  A+LHN
Sbjct: 296 GRIAKSPRWAIAYKFQSETVKTTLHSVDFQVGRTGIITPIANLEPVLLSGTIVKRASLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434
           ED I  L           D+ +GD+  V++ GE+IPK+  I    R     +  +FP  C
Sbjct: 356 EDIINAL-----------DLHIGDQCYVEKGGEIIPKITGINKEARLTFGNKAVNFPKNC 404

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C + ++R  N        A+ C     C  Q    + HF SR A NI    +      
Sbjct: 405 PACNTPLIRFQNET------AYYCPNYTQCKPQIKGMITHFASRKAMNINVGEET----- 453

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            ++   A  +R  AD++ ++            +  + + S  N  +S+ + + +  ER +
Sbjct: 454 IETFYRAGLVRDIADLYEIKIDDI------LQLKRWAEKSAINFVESVQQSKQVPYERVL 507

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           + LGI  VG  +A+ LAK + + +            +  +   L  +  +G+ IAQ++++
Sbjct: 508 YGLGIHFVGEVVAKRLAKAFPTIEQL----------SIANNEQLTTIDGIGNQIAQSVIQ 557

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           ++ N  N+  +  L           +  + +++  K  + +G  +K  R K +E +   G
Sbjct: 558 YFSNENNLQLIRRLKLYGLQLFTIQKIFIDNKLAGKTFIISGIFRKYSRDKYKELIENNG 617

Query: 675 AVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQ 719
               + LS KTD I+ G N G  KL KAQ+ G+KI++E++FL +++
Sbjct: 618 GKNVSSLSAKTDFILSGVNMGPVKLIKAQRFGIKIISEDEFLKMIE 663


>gi|315187042|gb|EFU20799.1| DNA ligase, NAD-dependent [Spirochaeta thermophila DSM 6578]
          Length = 697

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 221/727 (30%), Positives = 348/727 (47%), Gaps = 59/727 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ ++A++E+  L + +   D  YY   +P + D EYD+L  R   +   FP L R   P
Sbjct: 1   MTEQEAKREIDRLVELLQRADYEYYVLGRPHLTDQEYDSLFERLKTLETRFPHLRR---P 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P+ ++G ++ +   +V H+IP LSL+K +   ++  +I +  R   K     + F +E
Sbjct: 58  DSPIQRVGSDLTVDFPEVAHTIPVLSLDKAYTETEVLSWIEKTERAAGK----PLGFVIE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + + Y  G    A  RG+G  G D++   R I  IP  +       + VRGEV
Sbjct: 114 EKIDGVSLVLYYRGGILDRAVTRGNGRVGNDITPNARTIRQIPLRIPE--NGEVVVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           Y+    F  +N  M      PYANPRN A G+LRR N  ++ R    F+   G      A
Sbjct: 172 YLPLQYFDEINARM----EVPYANPRNLAGGVLRRKNSAEVARVPLHFLAYDGYLPFPVA 227

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQAN-----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
               E L  +   GFPVN    +           I ++    +S R+TL Y IDGLV+KV
Sbjct: 228 TY-TESLDYLIDWGFPVNPRHERLPAGTPDREARIRTFIERERSGRATLDYQIDGLVFKV 286

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +E  ++++LG     PRW I++KF   QA T LL ID+Q+GRTG +TPVARL+PV + G+
Sbjct: 287 NELDVRERLGYTGHHPRWAIAYKFEAPQAVTELLRIDVQVGRTGRVTPVARLKPVELSGS 346

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I+N TLHNEDY++ L+           +  GD V + + G+VIP +  ++         
Sbjct: 347 TISNVTLHNEDYVQALE-----------LAPGDLVAISKRGDVIPAIEKVVEKN-EEGVP 394

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            +  P  CP C S +         +   AH       C A    RLK FVS    +I  L
Sbjct: 395 VWRMPEHCPECGSPL---------ERRGAHHFCPNRNCPAVITGRLKFFVSPKQMDIRVL 445

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +DF  +       IR   D++T          K+ +  GFG+  ++ +   I + +
Sbjct: 446 GNETIDFLVEK----GYIRRIPDLYTFDYW------KLLDEPGFGEKKISQIVQGIEESK 495

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
                  + +LGI  VG  +  +L +    S              +  D  +L R+  +G
Sbjct: 496 KRPFSTVLVALGIPEVGPSVVETLIRGGITSIDRLF------TIADRGDVEALTRLEGIG 549

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQ-R 663
           +  A+ ++E  ++P     +E L K            VS    E +    TG+ +    R
Sbjct: 550 EKTARQLMETLRDPEWRKEIEELRKAGLSFEEERPTVVSGGPFEGQAWCVTGSFRHFTPR 609

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            KA+E +  LG  V + +S KT  ++VG+NPGSKLEKA+ LGV++++E+QF+ +L+    
Sbjct: 610 SKAEELIASLGGKVVSSVSSKTTHLLVGENPGSKLEKARSLGVRLVSEDQFIEMLKAAGV 669

Query: 724 TLRIHDD 730
                 +
Sbjct: 670 DPFNEKE 676


>gi|157737313|ref|YP_001489996.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri RM4018]
 gi|166215390|sp|A8ETQ3|DNLJ_ARCB4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157699167|gb|ABV67327.1| DNA ligase [Arcobacter butzleri RM4018]
          Length = 648

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 216/707 (30%), Positives = 357/707 (50%), Gaps = 61/707 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+    +  L        + YY +  PI  D EYD L R C A     P L+    P
Sbjct: 1   MTKEEYDLNIEKLIS----WANAYYVFDNPIATDEEYDKLARLCLAYEQENPKLSH---P 53

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG +     K +H     S E ++N ++L  +I R  +      + ++ F  +
Sbjct: 54  NSPNKRVGGIVLDGFIKASHLSRMWSQEDVFNTQELEDWIKRASKV-----NTNLEFFCQ 108

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK DG  + + YE G    A  RGDG  GEDV+   + I +IP  +      +IE+RGEV
Sbjct: 109 PKFDGASLNLIYENGILKQAITRGDGTVGEDVTNNAKTIFSIPLEIEE--KSLIEIRGEV 166

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            I K DF  +N E    G + +ANPRNAA+G LR+L+      R L F V G+G+ + + 
Sbjct: 167 VIKKADFEKINIERAKNGEQLFANPRNAAAGSLRQLDSNITAKRKLFFNVWGIGQ-NSLE 225

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   ++++ +  LGF        A+    I S Y++  SIR+     +DG+V K+D+  
Sbjct: 226 HKKYSQIMEYIYSLGFERPQMQTLASNIEEIESLYHKFISIRNDFEMMLDGMVIKIDDIE 285

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG   + PRW  ++KF   + +T+L  I +Q+GRTGI+TPVA +EP  I G+ ++ 
Sbjct: 286 TQEELGYTVKFPRWSCAYKFPAVEKTTKLKAITLQVGRTGIITPVAEVEPTLIDGSTVSR 345

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           D+++ D V++ ++G++IPK+  +    R  D    S 
Sbjct: 346 ATLHNFDEIERL-----------DLKINDEVIIIKSGDIIPKITKVFFERRKGDEITISR 394

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S V+ +                 L C ++ +  + +F S++  NI+GLG + 
Sbjct: 395 PTSCPTCNSEVLDEG---------TMIKCQNLDCPSRVVNSIIYFASKNCMNIDGLGNKI 445

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  F  +     I    DI++L+            + GF +  + NL ++I   +   L
Sbjct: 446 VEQLFNEKK----IYDILDIYSLKYEDLQD------LEGFKEKKINNLLNAIENTKGSEL 495

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R I +LGI H+G   ++ +   +             +   N D+ SLI +   G+ +A 
Sbjct: 496 HRVINALGIEHIGEVASKQICLEFG------------LDVINKDYDSLIALDGFGEQMAN 543

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           + +EF +   N   VE L+  ++P +   ++   +  +NK +V TGT+ K  R + +  +
Sbjct: 544 SFIEFMRV--NKNLVEKLISIINPKVEIKKEVSENPFKNKTVVITGTMSK-SRGEIKSML 600

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             LGA VS+ +S+KTD +I G++ GSK +KA +LGVK++ EE+   L
Sbjct: 601 EDLGAKVSSSVSKKTDYVIFGEDAGSKYDKAIELGVKLLTEEEMNSL 647


>gi|195867759|ref|ZP_03079760.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|195660614|gb|EDX53870.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
          Length = 673

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 216/712 (30%), Positives = 369/712 (51%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + +++ L+Q++   +  YY    P + D  YD + R    + +A+P    +   N 
Sbjct: 1   MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQVMRELIELENAYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG ++    KV H  P LSL   ++  DLRKF                 + +EPK
Sbjct: 58  PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFDQDNQNASVDLKG----YVVEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           IDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRGEVY
Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251
           ++ +DF  +ND +    +  +ANPRNAA+G LR L+ +    R L+ F++ L    E+  
Sbjct: 174 MAFHDFYEMNDNLEESDK-KFANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K  YE +Q ++   F V++ + + +T   +++  +    +R+ L Y IDG+V K++   +
Sbjct: 233 KTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINNLEV 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++  A
Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIVEYA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+   
Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPYESI 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+    +
Sbjct: 402 TNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSDAII 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F+     A  I+  AD++ LQ+ ++        I    D S +NL +SIN  +  SLE
Sbjct: 456 NKFYD----ANLIKNVADLYYLQKHKEFILASDFKI---KDKSFSNLINSINNSKTRSLE 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             + + GIRHVG  +A+ LAK + +                 ++  L  V   G+  A +
Sbjct: 509 FLLTAFGIRHVGPNLAKKLAKQFKTMTTLMHA----------NFDELTNVDACGEKAALS 558

Query: 612 IVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++ ++ +  NIC +  L +           I     N+  E +NK  V TG+   I R +
Sbjct: 559 LINWFNDDHNICLINQLEQVGVNMEYIDDFIYDENINIVDEYKNKTFVITGSFS-ISRDE 617

Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +  + +   A V   +S+KTD ++ G   G+KLEKA+ LGVKI+ E +F  
Sbjct: 618 IKTILEKYYDAKVKNSVSKKTDYVLAGAEAGTKLEKAKSLGVKII-ENEFWK 668


>gi|188524111|ref|ZP_03004188.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|198273308|ref|ZP_03205844.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|195659974|gb|EDX53354.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|198249828|gb|EDY74608.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
          Length = 673

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 216/712 (30%), Positives = 368/712 (51%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + +++ L+Q++   +  YY    P + D  YD   R    + +A+P    +   N 
Sbjct: 1   MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG ++    KV H  P LSL   ++  DLRKF                 + +EPK
Sbjct: 58  PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFDQDNQNASVDLKG----YVVEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           IDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRGEVY
Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251
           ++ +DF  +ND +    +  +ANPRNAA+G LR L+ +    R L+ F++ L    E+  
Sbjct: 174 MAFHDFYEMNDNLEESDK-KFANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K  YE +Q ++   F V++ + + +T   +++  +    +R+ L Y IDG+V K++   +
Sbjct: 233 KTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINNLEV 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++  A
Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIVEYA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+   
Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPYESI 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+    +
Sbjct: 402 TNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSDAII 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F+     A  I+  AD++ LQ+ ++        I    D S +NL +SIN  +  SLE
Sbjct: 456 NKFYD----ANLIKNVADLYYLQKHKEFILASDFKI---KDKSFSNLINSINNSKTRSLE 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             + + GIRHVG  +A+ LAK + +                 ++  L  V   G+  A +
Sbjct: 509 FLLTAFGIRHVGPNLAKKLAKQFKTMTTLMHA----------NFDELTNVDACGEKAALS 558

Query: 612 IVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++ ++ +  NIC +  L +           I     N+  E +NK  V TG+   I R +
Sbjct: 559 LINWFNDDHNICLINQLEQVGVNMEYIDDFIYDENINIVDEYKNKTFVITGSFS-ISRDE 617

Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +  + +   A V   +S+KTD ++ G   G+KLEKA+ LGVKI+ E +F  
Sbjct: 618 IKTILEKYYDAKVKNSVSKKTDYVLAGAEAGTKLEKAKSLGVKII-ENEFWK 668


>gi|294784746|ref|ZP_06750034.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_27]
 gi|294486460|gb|EFG33822.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_27]
          Length = 696

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 218/711 (30%), Positives = 364/711 (51%), Gaps = 50/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L +++  + + YY  +  +I D E+D L +  +++   +P        + P   +
Sbjct: 29  EKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYPQYKEI---SSPTTSV 85

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G  +      KV H+ P LSL   +NI ++  FI RI +   K+    + + LE K+DG 
Sbjct: 86  GASLKENKFKKVEHTHPMLSLANSYNIGEIVDFIERIKKKIPKE--QELKYCLEVKLDGL 143

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV +    
Sbjct: 144 SISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIIKTLPQAI--DMEIRGEVVLPLAS 201

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E +  G + +ANPRNAASG LR+L+   +    L+ + + L +  ++  K   E
Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKGRGLDAYFYFLVEADKLGLKSHSE 261

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  +G           T   I    +  +  R  LPY+ DGLV KVDE +L  ++G
Sbjct: 262 SIKFLESMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIG 321

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF   Q ST L  +  Q+GRTG LTPVA L+ V + G+ +  A+LHN 
Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTILNGVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNI 381

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+GDRV +++A E+IP+VV  I  ER  + +    P  CP+
Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKVIEEPVCCPV 430

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++ R+      K            C A+    +++FVSRDA NI GLG + ++ F  
Sbjct: 431 CNHKLEREEGLVDIK-------CINEECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DIF L+  ++     +ENI   G  S+ NL +SI + +N   ++ I+S
Sbjct: 484 ----LGYIKTVVDIFDLKEHRE----ALENIDKMGKRSIENLLNSIEESKNRDYDKVIYS 535

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   ++ LAK   +                  +  L  +  +G+I A  I+ F+
Sbjct: 536 LGIPFIGKVASKILAKASKNIDKLM----------TMTFEELTSIEGIGEIAANEIIAFF 585

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           +  +N   +E+L ++      +  +    N++     K  +FTGTL+   R + +E + +
Sbjct: 586 KKEKNQKIIESLKEKGLKFEIKESETNVQNINPNFAGKNFLFTGTLKHFTREQIKEEIEK 645

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|256846124|ref|ZP_05551582.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_36A2]
 gi|256719683|gb|EEU33238.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_36A2]
          Length = 696

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 218/711 (30%), Positives = 364/711 (51%), Gaps = 50/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L +++  + + YY  +  +I D E+D L +  +++   +P        + P   +
Sbjct: 29  EKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYPQYKEI---SSPTTSV 85

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G  +      KV H+ P LSL   +NI ++  FI RI +   K+    + + LE K+DG 
Sbjct: 86  GASLKENKFKKVEHTHPMLSLANSYNIGEIVDFIERIKKKIPKE--QELKYCLEVKLDGL 143

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV +    
Sbjct: 144 SISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIIKTLPQAI--DMEIRGEVVLPLAS 201

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E +  G + +ANPRNAASG LR+L+   +    L+ + + L +  ++  K   E
Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKGRGLDAYFYFLVEADKLDLKSHSE 261

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  +G           T   I    +  +  R  LPY+ DGLV KVDE +L  ++G
Sbjct: 262 SIKFLESMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIG 321

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF   Q ST L  +  Q+GRTG LTPVA L+ V + G+ +  A+LHN 
Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTILNGVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNI 381

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+GDRV +++A E+IP+VV  I  ER  + +    P  CP+
Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKVIEEPVCCPV 430

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++ R+      K            C A+    +++FVSRDA NI GLG + ++ F  
Sbjct: 431 CNHKLEREEGLVDIK-------CINEECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DIF L+  ++     +ENI   G  S+ NL +SI + +N   ++ I+S
Sbjct: 484 ----LGYIKTVVDIFDLKEHRE----ALENIDKMGKRSIENLLNSIEESKNRDYDKVIYS 535

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   ++ LAK   +                  +  L  +  +G+I A  I+ F+
Sbjct: 536 LGIPFIGKVASKILAKASKNIDKLM----------TMTFEELTSIEGIGEIAANEIIAFF 585

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           +  +N   +E+L ++      +  +    N++     K  +FTGTL+   R + +E + +
Sbjct: 586 KKEKNQKIIESLKEKGLKFEIKESETNVQNINPNFAGKNFLFTGTLKHFTREQIKEEIEK 645

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|85057601|ref|YP_456517.1| NAD-dependent DNA ligase [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|123725342|sp|Q2NJF5|DNLJ_AYWBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|84789706|gb|ABC65438.1| NAD-dependent DNA ligase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 671

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 228/706 (32%), Positives = 376/706 (53%), Gaps = 50/706 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++ SL ++++  +  YY  S P + D +YDAL +    + + +P       P  P  
Sbjct: 7   IKQKIKSLVKQLNKANYQYYNLSDPDLSDQQYDALIKELINLENHYPQFKL---PYSPTL 63

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           KIGG +      + H  P +SL  ++NIE+L+ F  RI +        +     E KIDG
Sbjct: 64  KIGGFVEKKFSTIKHKTPMMSLANVFNIEELKAFYDRIVKKI-----PTFSLLTELKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I+++Y+KG  V A  RG+G  GEDV+   + I TIP  L+ ++   +EVRGE+Y+S  
Sbjct: 119 VAISLKYQKGILVRALTRGNGIWGEDVTKNAQTIKTIPLRLNEDL--DLEVRGEIYLSHP 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQY 255
           DF  LN +     +  ++NPRNAASG LR+LN      R L+ FV+G+          Q 
Sbjct: 177 DFEKLNAQRKQENKPLFSNPRNAASGTLRQLNSAVVAKRNLSIFVYGIADPYLTKPT-QK 235

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L  +  LGF  N      + F  ++S   + KSI+  L YD DG+V K++E      +
Sbjct: 236 ETLVFLTALGFATNPHHYFVSNFENLLSVIEKYKSIKEQLTYDTDGIVIKINELVFHSLI 295

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A++PRW  ++KFA   + + + +I  Q+GRTG++TPV  + PV + G+L++   LHN
Sbjct: 296 GATAKAPRWATAYKFATITSQSIIQNIIFQVGRTGVITPVCEIMPVMVDGSLVSKVFLHN 355

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            DYI             +DIR+ D V+V +AG VIP+++++I ++R    +P      CP
Sbjct: 356 YDYI-----------CKKDIRIKDHVIVHKAGSVIPEILEVIKSKRTDLQKPTLMIEKCP 404

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C++ + +                    C  Q++++L HFVS++A +I  LG+Q +  FF
Sbjct: 405 SCKTILEKQPGGID-------YFCLNPNCREQKIQKLIHFVSKNAMDINVLGEQTIITFF 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   I  P+D++ L+  Q      ++ I GFG   +TN+ D+I   +    E  +F
Sbjct: 458 DKN----LITKPSDLYLLKNHQHI----LQEISGFGAKKITNILDAIEASKQKGFEDVLF 509

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGI+H+G ++++ LAKY+ + +N  Q  +           ++ ++  +G  IAQ+I ++
Sbjct: 510 ALGIKHIGKKVSQVLAKYFQTIENLQQSTS----------DTITQIREIGIKIAQSIQQY 559

Query: 616 YQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           + N  N+  V  L K      S    +    +   NKK+V TGTLQK  R + Q+ + Q+
Sbjct: 560 FSNSCNLEEVTKLKKLGVSFQSTNSQKPTTQNIFTNKKIVLTGTLQKYSRLQIQQILEQM 619

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           GA+++  LS KT+ +IVG N GSKL KAQ+L + I+ E++   +++
Sbjct: 620 GAIITNSLSLKTNYLIVGINAGSKLTKAQKLQIPIIEEKELQQIIE 665


>gi|19705038|ref|NP_602533.1| NAD-dependent DNA ligase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|81485410|sp|Q8RI94|DNLJ_FUSNN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|19712952|gb|AAL93832.1| NAD-dependent DNA ligase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 696

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 222/711 (31%), Positives = 367/711 (51%), Gaps = 50/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L ++++ + D YY  +K +I D E+D L +  +++   +P        + P   +
Sbjct: 29  EKIVKLREDLNKYRDSYYNDNKSLISDYEFDILLKELESLEEKYPQYKEI---SSPTTSV 85

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G  +      KV H  P LSL   +NI ++ +FI RI +   K+    + + LE K+DG 
Sbjct: 86  GASLKENKFKKVEHLHPMLSLANSYNIGEIVEFIERIKKKIPKE--QELKYCLEVKLDGL 143

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV +    
Sbjct: 144 SISLTYRQGKLVRAVTRGDGFIGEDVTENILEIASIVKTLPQAI--DMEIRGEVVLPLAS 201

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E +  G + +ANPRNAASG LR+L+      R L+ + + L +  ++  K   E
Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKDRGLDAYFYFLVEADKLGLKSHSE 261

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  +G           T   I    N  +  R +LPY+ DGLV KVDE +L  ++G
Sbjct: 262 SIKFLESMGIKTTGIFELLETSKDIEKRINYWEKERESLPYETDGLVIKVDEINLWDEIG 321

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF   Q ST L D+  Q+GRTG LTPVA L+ V + G+ +  A+LHN 
Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNI 381

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+GDRV +++A E+IP+VV  I  ER  + +    P+ CPI
Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKVIEEPTCCPI 430

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++ R+      K            C A+    +++FVSRDA NI GLG + ++ F  
Sbjct: 431 CNHKLEREEGLVDIK-------CINEECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DIF L+  ++     +ENI   G  S+ NL +SI + +N   ++ +++
Sbjct: 484 ----LGYIKTVVDIFDLKNHRE----ALENIDKMGKKSIENLLNSIEESKNRDYDKILYA 535

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   ++ LAK   +                  +  L  +  +G+I A  I+ F+
Sbjct: 536 LGIAEIGKVTSKILAKASKNIDKLMA----------MTFEDLTSIEGIGEIAANEIIAFF 585

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
              +N   ++ L ++      +  +    NV+     K  +FTGTL+   R + +E + +
Sbjct: 586 TKEKNQKIIQGLKEKGLKFEIKESEASVQNVNPNFVGKNFLFTGTLKHFTREQIKEEIEK 645

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|291277000|ref|YP_003516772.1| DNA ligase [Helicobacter mustelae 12198]
 gi|290964194|emb|CBG40040.1| DNA ligase [Helicobacter mustelae 12198]
          Length = 669

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 223/716 (31%), Positives = 364/716 (50%), Gaps = 64/716 (8%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K ++   +E       +++     +++      YY    PI  D EYD L         A
Sbjct: 13  KSKKETSME-------KEQYEKKVEQLKKMAYHYYVLDDPISSDEEYDILYHEVKGYEEA 65

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
            P+  R    + P  ++G    L   K TH     SL+ +++ E+L  +  +IY+     
Sbjct: 66  HPEAIRE---DSPTQRVGMPPLLEFQKNTHRKKMWSLDDVFSFEELESWCQKIYK----- 117

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
           +     FT  PK DG  + + YE G  + A  RGDG  GE V+   + IP+IP  L +  
Sbjct: 118 NHPEAIFTCSPKFDGASLNLLYENGDLISATTRGDGMQGELVTQNAKTIPSIP--LKIPH 175

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240
             +IE+RGEV I+K+DF ALN + +  G   +ANPRNAA+G +R+L+ +    R L F  
Sbjct: 176 KGLIEIRGEVVIAKSDFEALNKKRMEEGEALFANPRNAAAGSMRQLDSSITAQRKLRFIP 235

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
            G G+   +      E L+++ C GF     V+       I  YY E+   R  LP  +D
Sbjct: 236 WGFGQ-HTLGIDSFKEALEQVFCFGFSPIPFVQLCKNMQEIQRYYEEIMQRREDLPMMLD 294

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V  +D F +Q+++G   +SPR+  ++KF   +  T++L I  Q+GRTG++TPVA LEP
Sbjct: 295 GMVVMLDSFLMQEKMGFTIKSPRFACAYKFPAVEKFTKILSIINQVGRTGVITPVAELEP 354

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           + I GA +T ATLHN   I+            +DIR+ D V+V R+G+VIPK++   +  
Sbjct: 355 IEIEGARVTRATLHNYKEIQK-----------KDIRIFDEVVVIRSGDVIPKIIRPNIAR 403

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  + +    P+ CPIC  R++ +                 L C+A+  E + HFVS+ A
Sbjct: 404 RTGEEKAIEPPTHCPICGERLLIEEIFIR---------CQNLQCTARVRESIVHFVSKKA 454

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            NI+GLG++ +   F     A  ++   D+++L         ++  + GF +    NL +
Sbjct: 455 LNIDGLGEKIIYQLF----AAGLVKNITDLYSLDYE------ELLRLEGFKEKKAKNLLE 504

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I   +NI L R I +LGI H+G   ++ LA  +             +   + D+ +L R
Sbjct: 505 AIANTKNIDLWRLIHALGIEHIGEGASKKLALAFG------------LECFDKDYDALTR 552

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +   G  +A++ +EF  +  N   +  LLK ++P + + +  V +    KK+V TG++Q+
Sbjct: 553 IDGFGKEMAESFLEF--SQVNARLIHVLLKILTPKVQQTQNPVQNYFSAKKIVLTGSMQR 610

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
             R +    +  +GA +S  +S K D +I G+NPGSKL+KA++LGV I++E +F  
Sbjct: 611 -SREEVAALLEGVGAKISTSVSGKVDFVIYGENPGSKLDKARELGVGILSEAEFWE 665


>gi|260495084|ref|ZP_05815213.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_33]
 gi|260197527|gb|EEW95045.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_33]
          Length = 696

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 212/711 (29%), Positives = 361/711 (50%), Gaps = 50/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L +++  + + YY  +  +I D E+D L +  +++   +P        + P   +
Sbjct: 29  EKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYPQYKEI---SSPTTSV 85

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G  +      KV H  P LSL   +NI ++  FI RI +   K+    + + LE K+DG 
Sbjct: 86  GASLKENKFKKVEHIHPMLSLANSYNIGEIVDFIERIKKKISKE--QELKYCLEVKLDGL 143

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +GK V A  RGDG  GEDV+  I  I +I + L   +   +E+RGEV +    
Sbjct: 144 SISLTYRQGKLVRAVTRGDGLIGEDVTENILEITSIVKTLPQAM--DMEIRGEVVLPLAS 201

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E +  G + +ANPRNAASG LR+L+   +    L+ + + L +  ++  K   E
Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKERGLDAYFYFLVEADKLGFKSHSE 261

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  +            T   I    +  +  R  LPY+ DGLV KVDE +L  ++G
Sbjct: 262 SIKFLESMRIKTTGIFELLETSKEIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIG 321

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF   Q ST L  +  Q+GRTG LTPVA L+ V + G+ +  A+LHN 
Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTVLNGVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNI 381

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+GDRV +++A E+IP+VV  I  +R  + +    P  CP+
Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKSIKEDRTGNEKIIEEPVNCPV 430

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++ R+      K            C A+    +++FVSRDA NI GLG + ++ F  
Sbjct: 431 CNHKLEREEGLVDIK-------CVNEECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DI+ L+  ++     +ENI   G  S+ NL +SI + +N   ++ I++
Sbjct: 484 ----LGYIKTVVDIYDLKNHRE----SLENIDKMGKKSIENLLNSIEESKNRDYDKVIYA 535

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   ++ LAK   +                  +  L  +  +G+I A  I+ F+
Sbjct: 536 LGIAEIGKVTSKILAKASKNIDKLM----------TMTFEELTSIDGIGEIAANEIIAFF 585

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           +  +N   ++ L ++      +  +    N++     K  +FTGTL+   R + +E + +
Sbjct: 586 KKEKNQKIIQGLKEKGLKFEIKESETNTQNINPNFAGKNFLFTGTLKHFTREQIKEEIEK 645

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|308450080|ref|XP_003088175.1| hypothetical protein CRE_02776 [Caenorhabditis remanei]
 gi|308249279|gb|EFO93231.1| hypothetical protein CRE_02776 [Caenorhabditis remanei]
          Length = 1202

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 208/808 (25%), Positives = 350/808 (43%), Gaps = 125/808 (15%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           IP+E    E AR E   L  EI  +   YY  +  ++ D++YD L  R +A+  AFP+LA
Sbjct: 172 IPVE---FEAARVEAEQLTAEIERYRAAYYSEATSLVSDAQYDELFHRLEALERAFPELA 228

Query: 67  RSEDPNGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
                + P  ++G  +      +  H+   LSL+ ++++++ R++  +      +    +
Sbjct: 229 GQ---DSPTQEVGSAVASAGFPEHEHAERMLSLDNVFSLDEFREWAEKARASSGR----A 281

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184
           + +  E KIDG  I + Y  G    A  RGDG  GED++  +  IP IPRVL    IPE 
Sbjct: 282 VRWLTELKIDGLAIALAYRNGVLETATTRGDGRVGEDITENVDLIPVIPRVLEGEGIPEF 341

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGR--------------------KPYANPRNAASGIL 224
            E RGEV+++  +F ALN+   A+                        +AN RN A+G L
Sbjct: 342 FEARGEVFLTTENFEALNERQHALQAEFAADQLAKGVPAEKITVRFPEFANARNTAAGSL 401

Query: 225 RRLN----------PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ 274
           R+              D    L+ +VHG+G         Q +  + +   G PV+   R 
Sbjct: 402 RQRAEKKNERELELMRDRLGRLSLYVHGIGAWQHPDFANQSDAYELLSSWGLPVSPHSRV 461

Query: 275 ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQ 334
            ++   ++ +  +  + R    ++IDG+V K+DE  L ++LGE +R+PRW I++K+  ++
Sbjct: 462 LDSVDEVLEFIEDRGAHRHDFEHEIDGIVIKIDELELHRELGETSRAPRWAIAYKYPPEE 521

Query: 335 ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRD 394
             T+LL I + +GRTG  TP A +EPV + G+ ++ ATLHN+  +K            + 
Sbjct: 522 VYTKLLAIRVGVGRTGRATPYAVMEPVKVAGSTVSQATLHNQQVVK-----------AKG 570

Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
           + +GD V++++AG+VIP+V+  ++  R      +  P  CP C + +         +   
Sbjct: 571 VLIGDTVVLRKAGDVIPEVLGAVLERRDGSEVEWQMPVECPECGTELRAM-----KEGDI 625

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED--------PAFSI-- 504
             RC    AC AQ   R++H  SR   +IE LG+       + E          A     
Sbjct: 626 DLRCPNARACPAQVRGRVEHIGSRGGLDIEVLGEITAAALTQPEVPSVPPLETEAGLFDL 685

Query: 505 -------------------------------RIPADIFTLQR----------RQQTSTTK 523
                                          R P    T++            ++ +  +
Sbjct: 686 TLEELVPITVVVRDSETGEPVIDEATGEPRRRSPFQRVTVEYPPEAEGMDATARRQAGFR 745

Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
            ++ +             + + +   L R I SL IRHVG   AR+LA ++ S       
Sbjct: 746 KDHRVVRPSKDAETFLAELERAKTKPLWRLIVSLNIRHVGPVAARALADWFGSLDAIRAA 805

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR----- 638
                         L  V  VG IIA++++E+++   +   VE                 
Sbjct: 806 ----------SVEELSAVDGVGGIIAESLLEWFEVDWHREIVERWTAAGVQWTTPGHPGP 855

Query: 639 -HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697
                    +    +V TG+L    R  A+E + Q G   ++ +S+KTD +  G   GSK
Sbjct: 856 GAAVAEGGVLAGLTVVATGSLDGFTRDGAKEAIIQAGGKAASSVSKKTDFVAAGPGAGSK 915

Query: 698 LEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           L KA++LG+ +++  QF  L+ +    L
Sbjct: 916 LAKAEELGIPVLDASQFAVLVSEGPAAL 943


>gi|302392792|ref|YP_003828612.1| DNA ligase, NAD-dependent [Acetohalobium arabaticum DSM 5501]
 gi|302204869|gb|ADL13547.1| DNA ligase, NAD-dependent [Acetohalobium arabaticum DSM 5501]
          Length = 671

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 205/699 (29%), Positives = 340/699 (48%), Gaps = 58/699 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E   +E+  L  +++ ++  YY    P++ D EYD L  R   +               P
Sbjct: 5   ETLEQEMKKLINKLNKYNYHYYVLDDPLVSDKEYDQLYDRLVELEEE----TGKVLSGSP 60

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW-------QKKDDNSIF 127
             ++G E         H  P  SL+K     +LR +  RI R          +       
Sbjct: 61  TQRVGAEPLDEFDSHQHLAPLWSLDKAQTGGELRDWDERIRRLIADYNREHPENPLPEPL 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           +T+E K DG  I + YE+G+ V AA RG G  GE +   ++ I TIP  +       +EV
Sbjct: 121 YTVEYKFDGLTINLTYEEGELVQAATRGTGEVGEAILEQVKTIKTIPLQIP-FKSGKLEV 179

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           +GE  +  +     N +       P  N RNAA+G LR L+P     R L+ F + +G  
Sbjct: 180 QGEGIMRLSVLEEYNQQA----ETPLKNARNAAAGALRNLDPKVTAERNLDAFFYSIGYY 235

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
             I      E+L  +R   F VN+ ++  +    ++     ++     L Y +DG+V KV
Sbjct: 236 EGIEFDTHLEILDFLRENRFMVNDYLKTFDEIEDVIEEMETIEEKVDDLDYLVDGMVIKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++   Q+ LG  AR+PRW I++KFA K+ +T LLD+  Q+GRTG LTPVA LEPV+I GA
Sbjct: 296 NDLRTQEVLGYTARAPRWAIAYKFAAKEVTTTLLDVKWQVGRTGKLTPVALLEPVDIEGA 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ ATL+N D I+            +D+  G RV ++R+ +VIP+++  +  E   + +
Sbjct: 356 TVSKATLNNWDDIQR-----------KDVAKGCRVWLRRSNDVIPEIIGRVETEEIEEVE 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
             + P  CP C S +V+D             C   L C  Q + R+ HF SRDA  IE  
Sbjct: 405 EIAKPEECPDCGSSLVQD--------GVHLFCPNSLFCKPQLVARVAHFASRDALEIETF 456

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            ++  +  ++       +R  AD++ ++        ++  + GFG+    NL D++ + +
Sbjct: 457 SEKTAEKLYEE----LGLRDIADLYDIE------YEELLELEGFGEQKAENLIDALEESK 506

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           ++ L  FI+ LG+ +VG   A  LA  + S +   +           D   L+ +  +G+
Sbjct: 507 DVELSSFIYGLGVPNVGTRTAELLADKFKSLERLMEA----------DKEELVEINGIGE 556

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRH 664
           ++A+ IV+F+ +     +++ +L+           E    S   ++ +V TG+L  + R 
Sbjct: 557 VVAEEIVDFFADENIQGSIQRMLEAGVEPNYEAIEEVQEDSPFVDQTIVMTGSLPGLTRS 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +A+E +  LG  V++ +S  TDI+IVG+NPGSKL+KA+Q
Sbjct: 617 EAKEKIKALGGKVTSSVSGNTDILIVGENPGSKLDKARQ 655


>gi|307718507|ref|YP_003874039.1| DNA ligase [Spirochaeta thermophila DSM 6192]
 gi|306532232|gb|ADN01766.1| DNA ligase [Spirochaeta thermophila DSM 6192]
          Length = 673

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 213/721 (29%), Positives = 343/721 (47%), Gaps = 59/721 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ ++A+KE+  L + +   D  YY   +P + D EYD+L  R   +   FP L R+   
Sbjct: 1   MTEQEAKKEIDRLVELLQRADYEYYVLGRPHLTDQEYDSLFDRLKTLEAQFPHLKRA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G ++ +   +V H+IP LSL+K +   ++  +I +  R   +     +   +E
Sbjct: 58  DSPTQRVGSDLTVDFPEVAHTIPVLSLDKAYTETEVLSWIEKTERAAGR----PLGCVIE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  + + Y  G    A  RG+G  G D++   R I  IP  +       + VRGEV
Sbjct: 114 EKIDGVSLVLYYRGGILDRAVTRGNGRVGNDITPNARTIRQIPLRIPE--TGEVVVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           Y+    F  +N  M      PYANPRN A G+LRR N  ++ R    F+   G      A
Sbjct: 172 YLPLQYFDEINARM----EVPYANPRNLAGGVLRRKNSAEVARVPLHFLAYDGYLPFPVA 227

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQAN----TFHGIVSYYNEMKSIRSTL-PYDIDGLVYKV 306
               E L  +   GFPVN    +           +  + E +        Y IDGLV+KV
Sbjct: 228 TY-TESLDLLIEWGFPVNPRHERIPAGTPDRAERIRAFIEKERTERATLDYQIDGLVFKV 286

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +E  ++ +LG     PRW I++KF   QA T L+ ID+Q+GRTG +TPVARL+PV + G+
Sbjct: 287 NELDVRDRLGYTGHHPRWAIAYKFEAPQAVTELVRIDVQVGRTGRVTPVARLKPVELSGS 346

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I+N TLHNEDY++ L+           +  GD V + + G+VIP +  ++         
Sbjct: 347 TISNVTLHNEDYVQALE-----------LAPGDLVAISKRGDVIPAIEKVVEKN-EEGVP 394

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            +  P  CP C SR+         +   AH      +C A    RLK FVS    +I  L
Sbjct: 395 VWRMPEHCPECSSRL---------ERRGAHHFCPNRSCPAVITGRLKFFVSPKQMDIRVL 445

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +DF  +       IR   D++T   R+        +  GFG+  +  +   I + +
Sbjct: 446 GNETIDFLVEK----GYIRRIPDLYTFDYRRL------LDEPGFGEKKINLIVQGIEESK 495

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLS-YQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
                  + +LGI  VG  +  +L +  ++      +        +  D  +L R+  +G
Sbjct: 496 RRPFSTVLVALGIPDVGPSVVETLIRGGITGIDRLLE------IADRGDVDALTRLEGIG 549

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQ-R 663
           +  A+ ++E  ++P     +E L K          + VS    E +    TG+ +    R
Sbjct: 550 EKTARQLIETLRDPEWRKEIEELRKAGLSFEEERPEAVSGGPFEGQVWCVTGSFRHFTPR 609

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            +A+E ++ LG  V + +S KT  ++VG+NPGSKLEKA+ LGV+++ E+QF+ +L+    
Sbjct: 610 SRAEELISSLGGRVVSSVSSKTTHLLVGENPGSKLEKARSLGVQLVTEDQFIEMLKGAGV 669

Query: 724 T 724
            
Sbjct: 670 D 670


>gi|148272584|ref|YP_001222145.1| NAD-dependent DNA ligase LigA [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|166215575|sp|A5CQU5|DNLJ_CLAM3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147830514|emb|CAN01449.1| NAD-dependant DNA ligase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 853

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 210/782 (26%), Positives = 344/782 (43%), Gaps = 99/782 (12%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
            +E A   + +L  EI  H D YY      + D+EYDAL    +A+  A P L      +
Sbjct: 22  DLEAASARVDALRTEIERHRDEYYGADASTLSDAEYDALVHELEALEEAHPTL---RSQD 78

Query: 73  GPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P   +GG    +    VTH+   LSL+ +++ E+L ++  ++ R         + +  E
Sbjct: 79  SPTQTVGGRAETTLFAPVTHAERMLSLDNVFSEEELAEWAAKVERDAG---SGRVRYLSE 135

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
            KIDG  I +RYE G  V AA RGDG  GEDV+  +  + T+P  L  +  P ++EVRGE
Sbjct: 136 LKIDGLAINLRYEHGVLVTAATRGDGVVGEDVTQNVLTMGTVPERLMGSGHPPLVEVRGE 195

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN----------PTDITRYLNFFV 240
           ++    +F  LN   + VG + +ANPRNAA+G LR+                 R L   V
Sbjct: 196 IFFPVAEFDELNARQLEVGERVFANPRNAAAGSLRQKEEGKSPARLELMRARIRRLRMLV 255

Query: 241 HGLGKTS------EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           HG+G         +     Q E+   +   G P++   R  +    +  +     + R+ 
Sbjct: 256 HGIGAWPVRELASDAHVSAQSEVYGLLAGWGLPISTHFRVFDDISEVTEFVRRHGAHRAE 315

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + IDG+V KVD+  L ++LG  +R+PRW  ++K+  ++ +T LLDI + +GRTG  TP
Sbjct: 316 VEHQIDGIVVKVDDLGLHEELGATSRAPRWATAYKYPPEEVNTTLLDIVVSVGRTGRATP 375

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A +E V + G+ +  ATLHN+  +K            + + +GD V++++AG+VIP+V+
Sbjct: 376 FAVMEKVEVAGSEVRQATLHNQQVVK-----------AKGVLIGDTVVLRKAGDVIPEVL 424

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +V  R    + F  P+ CP CQ+ +         +     RC    +C AQ   R++H
Sbjct: 425 GPVVELRDGTEREFVMPTLCPECQTPLR-----PAKEGDIDLRCPNARSCPAQVRGRVEH 479

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDP------------------------------AFSI 504
             SR A +IEGLG+       +  +P                                 +
Sbjct: 480 VASRGALDIEGLGEVAAAALTQPLEPEDPPLETEAGLFELTMADLVPITVVVRDAETGMV 539

Query: 505 R-----------IPADIFTLQRRQQTSTTK--IENILGFGDVSVTNLYDSINKRRNISLE 551
           +            P       +R           +       S   L ++++K +   L 
Sbjct: 540 KVDEKTGEAKRVTPFRRRRAPKRDGVFDPAAPWGDEDSVPSKSAEVLLENLDKAKTQDLW 599

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R + +L IRHVG   AR+LA ++ S                     L  V  VG IIA A
Sbjct: 600 RILVALSIRHVGPVAARALAGWFGSLDAIRSA----------SREELAAVDGVGGIIADA 649

Query: 612 IVEFYQNPRNICAVEALLKEVSPSI------GRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++++++   +   V+   K                      +    +V TG+L+   R  
Sbjct: 650 LLDWFEVDWHREIVDRWRKAGVVMEVPGHPGPGAAAAAGGVLAGLTVVATGSLEGYTREG 709

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
           A E +   G    + +S+KT  +  G   GSKL KA+ LGV+I++  +F  L++Q    +
Sbjct: 710 ALEAIMAAGGKAGSSVSKKTHYVAAGPGAGSKLGKAEALGVRIIDAAEFRLLVEQGPDAI 769

Query: 726 RI 727
            +
Sbjct: 770 AL 771


>gi|262066346|ref|ZP_06025958.1| DNA ligase, NAD-dependent [Fusobacterium periodonticum ATCC 33693]
 gi|291379910|gb|EFE87428.1| DNA ligase, NAD-dependent [Fusobacterium periodonticum ATCC 33693]
          Length = 696

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 218/711 (30%), Positives = 367/711 (51%), Gaps = 50/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L++++  + D YY  ++ +I D E+D L +  +++   +P+   +   + P   +
Sbjct: 29  ERIVKLKEDLDKYRDSYYNDNESLISDYEFDILLKELESLEEKYPEYKEA---SSPTASV 85

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G  +      KV H+ P LSL   +NI ++  FI RI +   K++   + + LE K+DG 
Sbjct: 86  GASLKENKFKKVEHAHPMLSLANSYNIGEVVDFIERIKKRISKEE--ELKYCLEVKLDGL 143

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +GK V A  RGDG  GEDV+  I  I ++ + L   I   IE+RGE+ +    
Sbjct: 144 SISLTYVQGKLVRAVTRGDGFIGEDVTENILQIASVVKTLPQAI--DIEIRGEIVLPLAS 201

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E +  G + +ANPRNAASG LR+L+P  +    L+ + + L +  ++  K   E
Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDPKIVKERALDAYFYFLVEADKLGLKSHSE 261

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  +G               I    +  +  R  LPY+ DGLV KVDE +L  ++G
Sbjct: 262 SMKFLESMGIKTTGIFELLENSKDIEQRIDYWEKERENLPYETDGLVIKVDEINLWDEIG 321

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF   Q ST L D+  Q+GRTG LTPVA LE V + G+ +  A+LHN 
Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNI 381

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+GDRV +++A E+IP+VV  I  ER  + +    P  CP+
Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKIIEEPINCPV 430

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++ R+      K            C A+    +++FVSRDA NI GLG + ++ F  
Sbjct: 431 CDHKLEREEGLVDIK-------CVNEECPAKIQGEIEYFVSRDALNIMGLGSKIVEKFID 483

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DI+ L+  ++     +ENI   G  S+ NL +SI + +N   ++ I++
Sbjct: 484 ----LGYIKTVVDIYDLKTHRE----DLENIDKMGKRSIENLLNSIEESKNREYDKVIYA 535

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   ++ LAK   +               +  +  L  +  +G+I A  I+ F+
Sbjct: 536 LGIPFIGKVASKVLAKASKNIDKLM----------SMTFEELTAIEGIGEIAANEIIAFF 585

Query: 617 QNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           +  +    V AL ++             +N++     K  +FTGTL+   R + +E + +
Sbjct: 586 KKEKTQKLVAALKEKGLKFEITESETKVENLNPNFAGKNFLFTGTLKHFTREQIKEEIEK 645

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|254303498|ref|ZP_04970856.1| DNA ligase (NAD(+)) [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148323690|gb|EDK88940.1| DNA ligase (NAD(+)) [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 696

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 222/711 (31%), Positives = 366/711 (51%), Gaps = 50/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L +++  + D YY  +K +I D E+D L +  +++   +P    +   + P   +
Sbjct: 29  EKIVKLREDLDKYRDSYYNDNKSLISDYEFDILLKELESLEEKYPQYKET---SSPTTSV 85

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G  +      KV H+ P LSL   +NI ++  FI RI +   K+    + + LE K+DG 
Sbjct: 86  GASLKENKFKKVEHAHPMLSLANSYNIGEIVDFIERIKKKISKE--QELKYCLEVKLDGL 143

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV +    
Sbjct: 144 SISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIVKTLPQAI--DMEIRGEVVLPLAS 201

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E +  G + +ANPRNAASG LR+L+   +    L+ + + L +  ++  K   E
Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKERGLDAYFYFLVEADKLGLKSHSE 261

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  +G           T   I    +  +  R  LPY+ DGLV KVDE +L  ++G
Sbjct: 262 SIKFLEAMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIG 321

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF   Q ST L D+  Q+GRTG LTPVA LE V + G+ +  A+LHN 
Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNI 381

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+GDRV +++A E+IP+VV  I  ER  + +    P+ CP+
Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKVIEEPTHCPV 430

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++ R+      K            C A+    +++FVSRDA NI GLG + ++ F  
Sbjct: 431 CNHKLEREEGLVDIK-------CINEECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DIF L+  ++     +ENI   G  S+ NL +SI + +N   ++ I+S
Sbjct: 484 ----LGYIKTVVDIFDLKEHKE----ALENIDKMGKRSIENLLNSIEESKNRDYDKVIYS 535

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   ++ LAK   +                  +  L  +  +G+I A  I+ F+
Sbjct: 536 LGIPFIGKVASKVLAKASRNIDKLM----------TMTFEDLTSIEGIGEIAANEIIAFF 585

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
              +N   ++ L ++      +  +    NV+     K  +FTGTL+   R + +E + +
Sbjct: 586 NKEKNQKIIQGLKEKGLKFEIKESEINVQNVNPNFAGKNFLFTGTLKHFTREQIKEEIEK 645

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 646 LGGKNLSSISKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|299144358|ref|ZP_07037438.1| DNA ligase, NAD-dependent [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518843|gb|EFI42582.1| DNA ligase, NAD-dependent [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 664

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 204/709 (28%), Positives = 334/709 (47%), Gaps = 58/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +    +  L  +++  +  YY    PI+ D+EYD L      +        +    N P 
Sbjct: 2   EIIDRIRELIDKVNKLNYHYYTLDDPIVSDAEYDELYYELKKLEDEN----KIILANSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-----KDDNSIFFTL 130
            ++GGE+     K TH  P  SL+K  + E+LR +  R  +  Q      K+  ++ + +
Sbjct: 58  TRVGGEVLSKFEKHTHIAPLYSLDKAQSYEELRAWHERNLKALQSYRASGKNIENLKYVV 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K DG  I + YE G    A+ RG+G  GE++   I+ I +IP  L +    ++EV+GE
Sbjct: 118 ELKFDGLTINLTYEDGYLKMASTRGNGFIGEEILPQIKTIYSIP--LEIPYKGLMEVQGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
             +  +     N        +   N RNAA+G LR L+P    +R L  F + +G   + 
Sbjct: 176 GLMPLSSLEKFN----RTHDEQLKNARNAAAGALRNLDPKVTKSRNLTAFFYNVGYIKDD 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             +   EM + +R  GF VN           ++    ++ SIR +L   IDG+  K+++ 
Sbjct: 232 RFRDDSEMKKFLRDNGFRVNENNYICKNLDEVIEKIEKIGSIRESLDILIDGVTIKINDM 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             +  LG   + PRW I++KF  K+ ST+LLD+   +GRT  +TP A L+PV IGG  I 
Sbjct: 292 ETRDLLGFTNKFPRWAIAYKFEAKEVSTKLLDVVWNVGRTSKVTPSAILQPVEIGGVTIK 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATL+N D I             + IR+  RVL++R+ +VIP+++  +  E         
Sbjct: 352 KATLNNYDDI-----------LKKKIRINGRVLLRRSNDVIPEILGALPTEEETIEIEM- 399

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P +CP C + +         K      C   L+C  Q + RL HF SRDA NIEGL + 
Sbjct: 400 -PKYCPSCGTELF--------KDGVHIFCPNTLSCVPQLVSRLTHFASRDAMNIEGLSEM 450

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +       D    IR    I+ L+++          + GF +    NL  +I   +   
Sbjct: 451 TISKLLNELD----IREIPQIYELEKQDL------LKLEGFKEKRANNLISAIADSKIRP 500

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L  FI+SLGI +VG + A  LA  +  +                 +  L+ +  +G I A
Sbjct: 501 LPNFIYSLGINNVGIKTAYDLANKFKDFDLLRHA----------KYDELVDIDDIGPITA 550

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           + IVEF+ +     +++ L +           +  +  ++K++V TGTL  I R + +  
Sbjct: 551 KEIVEFFNDKHIEKSIDRLFELGVSPKFEESTDEETYFKDKRIVITGTLS-IPRKELENM 609

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + + GA +S+ +S+ TD +I G++ GSK +KA  LG++I++E +   LL
Sbjct: 610 LIKFGAKISSSVSKNTDFVIAGEDAGSKYDKAINLGIEIIDENKLRELL 658


>gi|228904740|ref|ZP_04068794.1| DNA ligase [Bacillus thuringiensis IBL 4222]
 gi|228854754|gb|EEM99358.1| DNA ligase [Bacillus thuringiensis IBL 4222]
          Length = 656

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 216/709 (30%), Positives = 356/709 (50%), Gaps = 56/709 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   R     L  E++  +  YY   KPI  D+EYD L      I    P+   +     
Sbjct: 1   MFDLRARYLHLVGELTMLNHHYYTMDKPIASDAEYDRLYDELVKIEELHPEWTVAH---S 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P N++GGE+     K  H++P  SLEK    + +RKF+  + R     +  +  FT+E K
Sbjct: 58  PSNRVGGEVLDKFEKKEHTMPLYSLEKSQTYDGVRKFVEDVKR-----EFPNATFTIEQK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG    +RY  G F     RG G  GE VS  I+ I +IP  L++    +IE RGEV++
Sbjct: 113 MDGLANVLRYSGGSFSEGRTRGTGKIGEIVSEQIKTIRSIP--LNIRFQGVIEPRGEVFM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAK 252
             + F A N  +   G  P  NPRN A+G LR L+P        + F + +  +  I  +
Sbjct: 171 PISGFEAYNASL-PEGEAPLKNPRNGAAGALRNLDPRIAASRPLDAFWYDIAYSEGITFE 229

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q EM+  ++  GF +N      ++   I+    EMK +R TL +DIDG+V KV+E  ++
Sbjct: 230 TQAEMMTFLQEQGFKINPYFYVTDSIDVIIEKLEEMKEVRPTLNWDIDGMVIKVNELHIR 289

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  ++ P+W I++KF   + +T L  +  ++GRTG LTP+A LEPV+IGG  +T AT
Sbjct: 290 EELGYTSKFPKWAIAYKFEAVEETTTLNSVTWEVGRTGKLTPLAHLEPVDIGGTTVTKAT 349

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L+N D I             + ++VG  V V+R+ +VIP+++ I+      +      P+
Sbjct: 350 LNNYDDI-----------LRKGVKVGAEVFVRRSNDVIPEIMGIVEG---SEGTEIVPPT 395

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C++ +V+D         A  RC    +CSAQ + +  HF SR+A NI+   ++  +
Sbjct: 396 HCPECETVLVQD--------GAHLRCMNIDSCSAQSVGKFTHFASREAMNIDSFSEKTAE 447

Query: 493 FFFKSEDPAFSIRI-PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             F+    A  IR    D++ L R       ++  +  FG+     L  +I + ++ +LE
Sbjct: 448 QLFE----AGLIRNSFVDLYRLDR------NELLKLDRFGERKADRLLAAIEESKSRTLE 497

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            FI++LG+RH G   A  L +YY +  + A                L+R+  +G  +AQ+
Sbjct: 498 AFIYALGMRHSGKGTAERLLRYYNNIDDIANA----------SVEDLMRIEDIGSAVAQS 547

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           I +++ N RN+  +E L             +  +++E    V TG + +  R + + ++ 
Sbjct: 548 IFDYFHNERNLQMIEELKALGLTLTHVAAVSSGNQLEGNTFVITGKVSR-PRKEIEAFIK 606

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + G   S  +S+ T+ ++ G+  GSKL KAQ LGV ++ EEQ   ++ +
Sbjct: 607 EHGGKASGSISKNTNYLVAGEAAGSKLAKAQSLGVTVITEEQLYKMVNE 655


>gi|320094066|ref|ZP_08025884.1| NAD-dependent DNA ligase LigA [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979007|gb|EFW10532.1| NAD-dependent DNA ligase LigA [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 776

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 204/788 (25%), Positives = 343/788 (43%), Gaps = 100/788 (12%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E  S +  R     L   I      YY    P + D+EYD L R  + I  A P L  + 
Sbjct: 3   EHESFDAIRSRYDQLVAAIEEARRAYYDRDAPTLADAEYDRLYRELEDIERAHPQLRGA- 61

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P   +GG  + +   V H     SL+ ++++E+L  +  R++    +  +  +  T
Sbjct: 62  --DSPTLSVGGSADSAFAPVRHLQQMTSLDDVFSLEELAGWEQRMHE---ETGEAELPMT 116

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVR 188
            E K+DG  + + Y  G    AA RGDGH GED++A +R I +IP  L     P  +E+R
Sbjct: 117 AEVKVDGLAVNLLYVDGALRRAATRGDGHVGEDITANVRTIASIPARLDTAAPPRRVEIR 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247
           GEVY    +F + N+  +A G + + NPRNAA+G LR+ + ++   R L    HG+G   
Sbjct: 177 GEVYFPVAEFASFNEARVAAGERAFVNPRNAAAGSLRQKDSSETAKRPLAMVAHGVGFVE 236

Query: 248 ----EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                     Q+   Q +R  G PV+   R       I  +  E    R +L ++IDG+V
Sbjct: 237 AGGAFTPPTTQHGWYQLLREWGMPVSPYTRLLTGRGAIEEFIAETGEARHSLAHEIDGVV 296

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+D+ +LQ+ LG  +R+PRW  ++KF  ++  TRLLDI +Q+GRTG +TP   +E V +
Sbjct: 297 VKIDDLALQRSLGSTSRAPRWAAAYKFPPEEVHTRLLDIRVQVGRTGRVTPYGVMESVLV 356

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ +  ATLHN   +K            + + +GD V++++AG+VIP++V  +   R+ 
Sbjct: 357 AGSNVARATLHNAQEVKR-----------KGVLIGDLVVLRKAGDVIPEIVAPVEEARNG 405

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             + FS P+ CP C + +V     +  +     RC    AC AQ  ER+ H  +R A +I
Sbjct: 406 SEREFSMPAACPSCGTALV-----EEKEGDVDLRCPNKAACPAQITERIAHIGARSALDI 460

Query: 484 EGLGKQQLDFFFKSED-------------------------------------------- 499
           EGLG +      + E+                                            
Sbjct: 461 EGLGDEAALALTQPENNRDQVAAALVAGHAVVLEDGTRLELADAEDLPHAEQLATADAML 520

Query: 500 ---PAFSIRIPADIFTLQRRQQTSTTKIEN-----ILGFGDVSVTNLYDSINKRRNISLE 551
               A  +   + +F L+                         V   +   ++ + +  E
Sbjct: 521 PEPQAPVLTAESALFDLRAEDVRDVMVWRPTTVKGEPTGDWAQVRYFWTKAHRAKKVKGE 580

Query: 552 RFIFSLG----------IRHVGAEIARSLAKYY--LSYQNFAQEINNIIAHNNDDWLSL- 598
                +G          +  +    ++ LA+    LS ++        +A       +L 
Sbjct: 581 TVYERVGTTASKMLTQMLDEMERAKSQPLARVLVALSIRHVGPTAARALAARFGSMDALR 640

Query: 599 -------IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651
                    V  VG +IAQ++ ++++   +   +    +          + V + +E   
Sbjct: 641 AADVEELAAVDGVGGVIAQSLADWFEVDWHREILRRWSEAGVRMEDEAPEEVPAVLEGLT 700

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +V +G +    R  A+E +T  G   S  +S+KT +++ G   GSK  KA+ LGV +++E
Sbjct: 701 IVVSGAMPGYDREGAKEAITARGGKASGSVSKKTSLVVAGPGAGSKAAKAESLGVPVISE 760

Query: 712 EQFLFLLQ 719
            QF  LL+
Sbjct: 761 AQFADLLE 768


>gi|171920530|ref|ZP_02695360.2| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|171903225|gb|EDT49514.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
          Length = 673

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 216/712 (30%), Positives = 368/712 (51%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + +++ L+Q++   +  YY    P + D  YD   R    + +A+P    +   N 
Sbjct: 1   MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG ++    KV H  P LSL   ++  DLRKF                 + +EPK
Sbjct: 58  PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFDQDNQNASVDLKG----YVVEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           IDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRGEVY
Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251
           ++ +DF  +ND +    +  +ANPRNAA+G LR L+ +    R L+ F++ L    E+  
Sbjct: 174 MAFHDFYEMNDNLEESDK-KFANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K  YE +Q ++   F V++ + + +T   +++  +    +R+ L Y IDG+V K++   +
Sbjct: 233 KTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINNLEV 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++  A
Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIVEYA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+   
Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVNLSKRLANSVPYESI 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+    +
Sbjct: 402 TNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCINIEGMSDAII 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F+     A  I+  AD++ LQ+ ++        I    D S +NL +SIN  +  SLE
Sbjct: 456 NKFYD----ANLIKNVADLYYLQKHKEFILASDFKI---KDKSFSNLINSINNSKTRSLE 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             + + GIRHVG  +A+ LAK + +                 ++  L  V   G+  A +
Sbjct: 509 FLLTAFGIRHVGPNLAKKLAKQFKTMTTLMHA----------NFDELTNVDACGEKAALS 558

Query: 612 IVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++ ++ +  NIC +  L +           I     N+  E +NK  V TG+   I R +
Sbjct: 559 LINWFNDDHNICLINQLEQVGVNMEYIDDFIYDENINIVDEYKNKTFVITGSFS-ISRDE 617

Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +  + +   A V   +S+KTD ++ G   G+KLEKA+ LGVKI+ E +F  
Sbjct: 618 IKTILEKYYHAKVKNSVSKKTDYVLAGIEAGTKLEKAKLLGVKII-ENEFWK 668


>gi|166215834|sp|Q18E49|DNLJ_HALWD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 736

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 231/722 (31%), Positives = 368/722 (50%), Gaps = 54/722 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             PIE LS E A ++ + L + I  HD  YY  + PII D  YD L  R  A+     D+
Sbjct: 63  FRPIEQLSEEAAVEQATQLREAIREHDYQYYIRASPIIADRAYDILFDRLQALE----DI 118

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              +    P  ++GGE    L  V H    LS+++   ++ +R F  R+           
Sbjct: 119 FNLDTEASPTRRVGGEPLDELETVEHVTSMLSIDQSTAVDSVRDFDERVRDVVG-----D 173

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + +  EPK DG  + + YE G+++ AA RGDG+ G+DV+A +  +  +P  L  + P  +
Sbjct: 174 LEYICEPKFDGLSVEVIYEDGEYIRAATRGDGNRGDDVTAQVETVGAVPLKLHGDYPSYL 233

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245
            VRGEVY+ K  F   N E I    KP+ANPRNAA+G LR+L+P  +             
Sbjct: 234 AVRGEVYMPKAGFREYNRERIECDEKPFANPRNAAAGTLRQLDPGVVAERPLSCFFYDIL 293

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            +      Q+  L  ++  G   N+ + + ++    ++Y +++K+ R+ L Y+IDG V K
Sbjct: 294 DATELPPDQWTTLNDLQSWGLRTNDRISRVDSIDDAIAYRDQLKAARAELNYEIDGTVIK 353

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++   ++ LG  +RS RW  ++KF  +   T + DI +Q+GRTG LTPVA L+PV++GG
Sbjct: 354 VNDRGNREILGATSRSVRWAFAYKFPPRAEITHITDIVVQVGRTGRLTPVALLDPVDVGG 413

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ A+LHN + IK L  +            GD V V+RAG+VIP+V ++         
Sbjct: 414 VTVSRASLHNPEEIKRLSVNS-----------GDEVRVRRAGDVIPEVAEVTQKRATG-- 460

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
             F+FP+ CPIC S V +D             CTGGL C AQ +  + H+ SR A +I+G
Sbjct: 461 -TFNFPNQCPICHSSVEQD--------GPLAFCTGGLTCDAQLVRTIVHYGSRSALDIDG 511

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG+Q+++   +S      I   AD++TL     +       + G+G  S  NL  +I++ 
Sbjct: 512 LGEQRVEQLVES----GVIGELADLYTLSVADLSK------LDGWGTTSAENLIQAISET 561

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  SL  F+  LGI  VG  IAR+LA  + ++                D  +L  +  +G
Sbjct: 562 QTPSLTDFLVGLGIPEVGPTIARNLAGTFDNFDAIIDA----------DEAALREIEDIG 611

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
             ++  I EF+ N +N  A++ LL     P   +     ++ + +   VFTG+L  + R 
Sbjct: 612 PTVSTHISEFFTNEQNRAAIDNLLSAGVTPQTQQSTATTNAPLSDLTFVFTGSLS-VPRT 670

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            A  Y+ + G   +  +S  TD +++GDNPGS K   A++  V  ++E +F  LL +++ 
Sbjct: 671 TATTYIERHGGNATGSVSSNTDYLVIGDNPGSTKRIDAERNDVPEIDETEFTELLAEHDD 730

Query: 724 TL 725
           TL
Sbjct: 731 TL 732


>gi|110669547|ref|YP_659358.1| NAD-dependent DNA ligase LigA [Haloquadratum walsbyi DSM 16790]
 gi|109627294|emb|CAJ53784.1| DNA ligase (NAD) [Haloquadratum walsbyi DSM 16790]
          Length = 770

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 231/722 (31%), Positives = 368/722 (50%), Gaps = 54/722 (7%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             PIE LS E A ++ + L + I  HD  YY  + PII D  YD L  R  A+     D+
Sbjct: 97  FRPIEQLSEEAAVEQATQLREAIREHDYQYYIRASPIIADRAYDILFDRLQALE----DI 152

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              +    P  ++GGE    L  V H    LS+++   ++ +R F  R+           
Sbjct: 153 FNLDTEASPTRRVGGEPLDELETVEHVTSMLSIDQSTAVDSVRDFDERVRDVVG-----D 207

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + +  EPK DG  + + YE G+++ AA RGDG+ G+DV+A +  +  +P  L  + P  +
Sbjct: 208 LEYICEPKFDGLSVEVIYEDGEYIRAATRGDGNRGDDVTAQVETVGAVPLKLHGDYPSYL 267

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245
            VRGEVY+ K  F   N E I    KP+ANPRNAA+G LR+L+P  +             
Sbjct: 268 AVRGEVYMPKAGFREYNRERIECDEKPFANPRNAAAGTLRQLDPGVVAERPLSCFFYDIL 327

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            +      Q+  L  ++  G   N+ + + ++    ++Y +++K+ R+ L Y+IDG V K
Sbjct: 328 DATELPPDQWTTLNDLQSWGLRTNDRISRVDSIDDAIAYRDQLKAARAELNYEIDGTVIK 387

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V++   ++ LG  +RS RW  ++KF  +   T + DI +Q+GRTG LTPVA L+PV++GG
Sbjct: 388 VNDRGNREILGATSRSVRWAFAYKFPPRAEITHITDIVVQVGRTGRLTPVALLDPVDVGG 447

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++ A+LHN + IK L  +            GD V V+RAG+VIP+V ++         
Sbjct: 448 VTVSRASLHNPEEIKRLSVNS-----------GDEVRVRRAGDVIPEVAEVTQKRATG-- 494

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
             F+FP+ CPIC S V +D             CTGGL C AQ +  + H+ SR A +I+G
Sbjct: 495 -TFNFPNQCPICHSSVEQD--------GPLAFCTGGLTCDAQLVRTIVHYGSRSALDIDG 545

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG+Q+++   +S      I   AD++TL     +       + G+G  S  NL  +I++ 
Sbjct: 546 LGEQRVEQLVES----GVIGELADLYTLSVADLSK------LDGWGTTSAENLIQAISET 595

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  SL  F+  LGI  VG  IAR+LA  + ++                D  +L  +  +G
Sbjct: 596 QTPSLTDFLVGLGIPEVGPTIARNLAGTFDNFDAIIDA----------DEAALREIEDIG 645

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
             ++  I EF+ N +N  A++ LL     P   +     ++ + +   VFTG+L  + R 
Sbjct: 646 PTVSTHISEFFTNEQNRAAIDNLLSAGVTPQTQQSTATTNAPLSDLTFVFTGSLS-VPRT 704

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            A  Y+ + G   +  +S  TD +++GDNPGS K   A++  V  ++E +F  LL +++ 
Sbjct: 705 TATTYIERHGGNATGSVSSNTDYLVIGDNPGSTKRIDAERNDVPEIDETEFTELLAEHDD 764

Query: 724 TL 725
           TL
Sbjct: 765 TL 766


>gi|255321406|ref|ZP_05362566.1| DNA ligase, NAD-dependent [Campylobacter showae RM3277]
 gi|255301559|gb|EET80816.1| DNA ligase, NAD-dependent [Campylobacter showae RM3277]
          Length = 647

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 215/703 (30%), Positives = 338/703 (48%), Gaps = 60/703 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +KE       ++     YY    PI  D EYD L  +      A            P  +
Sbjct: 3   KKEYLEAVDTLNAWAKAYYTDDAPIATDEEYDELYHKVLEFERAN---LGEISMFSPTKR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GGE++    K  H     S+E I++ ++L  ++ R        D   + F L+PK DG 
Sbjct: 60  VGGEVSEGFVKARHGARMWSMEDIFSFDELLAWLKR-------GDKEGLEFALQPKFDGA 112

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G  V A  RGDG +GEDV++  + I  IP  L +     IE+RGEV I+KND
Sbjct: 113 SLNLLYENGALVRAITRGDGITGEDVTSNAKVIKNIP--LQIAYSGRIEIRGEVVIAKND 170

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N      G    +NPRNAA+G LR+L+     +R L F   G G    +  +   +
Sbjct: 171 FDEINFARAQRGESQLSNPRNAAAGSLRQLDSAVTASRRLRFKPWGYG-EQNLGLETYSQ 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           M+  +   GF      +   +   I   Y ++ + R + P+ +DGLV +V   +  ++LG
Sbjct: 230 MMDFIYSQGFEREEFFKICRSAEQIEEAYKQLVAQRDSKPFMMDGLVVRVQSIAASEELG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M+++KF   + +TRLLD+  Q+GR+G++TPV  LEPVNI GA++ +ATLHN 
Sbjct: 290 YTEKFPKFMVAYKFPAIEKTTRLLDVAFQVGRSGVVTPVGVLEPVNIDGAIVKSATLHNF 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L            ++ GD + + R+G+VIPK+  +    R     P   P  CP+
Sbjct: 350 DEIERL-----------GVQKGDFISIIRSGDVIPKITGVFKQRRDGSQTPIERPHECPV 398

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++ +                 L C A+ +  L HF S+   NI+GLG   ++  F+
Sbjct: 399 CGSMLLDEG---------VFVKCQNLECKARVINSLIHFASKKCLNIDGLGDAIVNQLFE 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +   ADI+ L  +          + GF D  + NL  +I   R  +L  FI S
Sbjct: 450 ----AGLVAKIADIYELTAQDL------ARLEGFKDKKIANLLGAIEASRTPALHSFIAS 499

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ +A+ Y                    +  +  +   G+ +A++  EF 
Sbjct: 500 LGIEHIGEVAAKKIAQIYP------------QNWRELSFGEVAAIEGFGEAMAESYAEFM 547

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           Q   N   ++ +L+ VSP     E    S I  K  V TGTL K  R + +  +   GA 
Sbjct: 548 QV--NRQNLDEILRFVSPQAQSFETKQ-SAISGKTFVITGTLSK-GRDEFKRVLEVNGAK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           VS  +S+KTD ++ GD  GSKL+KA++LGVK + E++   +++
Sbjct: 604 VSGSVSKKTDFVLYGDEAGSKLDKARELGVKAITEDELRQMIE 646


>gi|303232470|ref|ZP_07319159.1| DNA ligase (NAD+) [Atopobium vaginae PB189-T1-4]
 gi|302481435|gb|EFL44506.1| DNA ligase (NAD+) [Atopobium vaginae PB189-T1-4]
          Length = 836

 Score =  455 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 236/778 (30%), Positives = 356/778 (45%), Gaps = 97/778 (12%)

Query: 3   KRQLIPIEALSIEQ-ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
            +Q  P++  +    A   +  L + ++YH   YY    P+I D+++DA  +   A+  A
Sbjct: 83  SQQEPPVD--THATVAALRVPELRRLLTYHAWRYYALDDPLISDAQFDAYLQELIALEQA 140

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
            P+LA    P     ++GG ++      TH+    S++   N+++L  ++ R      K 
Sbjct: 141 HPELA---SPTSYTQRVGGFVSRQFAACTHAKRMYSIDDAMNLDELDLWLERTCDALAKL 197

Query: 122 DDN-------------------------------SIFFTLEPKIDGTMITIRYEKGKFVY 150
            ++                               S  FT E KIDG  I + YE G+FV 
Sbjct: 198 AESYEDASAPVPEGTSAAAQAAADARARMRKALLSPTFTCELKIDGLGIALTYESGQFVR 257

Query: 151 AALRGDGHSGEDVSACIRAIPTIP---------RVLSLNIPEIIEVRGEVYISKNDFLAL 201
           AA RGDG  GEDVSA +  I  +P          V +  +   +EVRGEVY+ K  F+ L
Sbjct: 258 AATRGDGAVGEDVSANVLTIADVPRALKPQGLAHVRNSGLNYALEVRGEVYMPKQSFVRL 317

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           N+E  A G   +ANPRNAA+G LR+ NP     R L  F++ +     +    Q+E L  
Sbjct: 318 NEEADAQGTATFANPRNAAAGSLRQKNPEITAHRDLKTFMYAVATRDGLDVHTQHEFLAW 377

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +   GF  N      ++   +  +       RS L YDIDG+V KVD+ + Q  +G  AR
Sbjct: 378 LASCGFSTNTKFATCHSAREVHDFCKRALEHRSELDYDIDGVVVKVDDMAAQDAMGFTAR 437

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +PRW I++KF  +Q  T L DI IQ+GRTG+LTPVA  EPV + G+ I  ATLHN D + 
Sbjct: 438 APRWAIAYKFPPEQKQTLLRDICIQVGRTGVLTPVAEFEPVLVAGSTIARATLHNLDEVT 497

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ----PFSFPSFCPI 436
                       RD+RVGD ++V +AG+VIP+VV  ++     +A      +  P  CP 
Sbjct: 498 R-----------RDVRVGDTIIVHKAGDVIPEVVGPVLEGAMAEAHAARPRWQMPRVCPS 546

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S VV++          A RC   + C AQ  ERL H+VSR A +I+GLG++ +     
Sbjct: 547 CGSSVVQEDGE------VAFRCVS-IDCPAQAKERLVHWVSRKAMDIDGLGEELIIKLIG 599

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN-------------LYDSIN 543
                  +R  AD +        +             +                +Y  I 
Sbjct: 600 RS----LVRDVADFYDRLTCDMIAKLDTGRYYKTSTGAHNEGDPILVGSTVATKIYAQIE 655

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +   L R +F LGIRHVG  +A  +A Y  S                     +  +  
Sbjct: 656 ASKQAGLARVLFGLGIRHVGQNVAGLIAAYAGSLSQLMAAQPT----------EIASIDG 705

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQ 662
           VG  IA+++ +F    +N   +  L         R +    +  +     V TGTL  + 
Sbjct: 706 VGPKIAESVHKFLSIEQNRTVITRLAAAGVRLSEREDAAPTAQTLHGYTFVLTGTLDGMA 765

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           R  A + +  LGA VS  +S+KT  +I G+N GSKL++A +LGV ++ + +   +L+Q
Sbjct: 766 RTDAADALRALGAKVSGSVSKKTSFVIAGENAGSKLDRAHELGVCVIGKPELDEILRQ 823


>gi|39938924|ref|NP_950690.1| NAD-dependent DNA ligase [Onion yellows phytoplasma OY-M]
 gi|81402396|sp|Q6YQD6|DNLJ_ONYPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|39722033|dbj|BAD04523.1| NAD-dependent DNA ligase [Onion yellows phytoplasma OY-M]
          Length = 671

 Score =  455 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 218/710 (30%), Positives = 376/710 (52%), Gaps = 50/710 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + +  ++++ SL ++++  +  YY  S P + D +YDAL +    +   +P       P 
Sbjct: 3   NFDLIKQKIKSLVKQLTKANYQYYNLSNPDLSDQQYDALLKELINLETRYPQFKL---PY 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  KIGG +      + H  P +SL  ++N+E+++ F  RI +        +     E 
Sbjct: 60  SPTLKIGGFVEKKFSTIKHKTPMMSLGNVFNLEEIKAFYDRIVKKI-----PTFSLLTEL 114

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  I+++Y+KG  V A  RG+G  GED++   + I TIP  L  ++   +EVRGE+Y
Sbjct: 115 KIDGVAISLKYQKGILVQALTRGNGIWGEDITKNAQTIKTIPLRLKEDL--DLEVRGEIY 172

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251
           +S   F  LN +     +  ++NPRNAASG LR+LN      R L+ FV+G+        
Sbjct: 173 LSHPAFEKLNAQRKQENKPLFSNPRNAASGTLRQLNSAIVAQRNLSIFVYGISDPYLTKP 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E L  +  LGF  N      + F  ++S   + K+I+  L YD DG+V K++E + 
Sbjct: 233 T-QKETLVFLTALGFTTNPHYYCVSNFENLLSVIEKYKTIKEQLTYDTDGIVIKINELAF 291

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
              +G  A++PRW  ++KFA   + + + +I  Q+GRTG++TPV ++ PV + G+L++  
Sbjct: 292 HSLIGATAKAPRWATAYKFATITSQSIVQNIIFQVGRTGVITPVCKIMPVMVDGSLVSKV 351

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
            LHN DYI             +DIR+ D V+V +AG VIP+++++I ++R    +P    
Sbjct: 352 VLHNYDYI-----------CKKDIRIKDHVIVHKAGSVIPEILEVIKSKRTDLQKPTLMI 400

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP CQ+ + +                    C  Q++++L HFVS++A +I  LG+Q +
Sbjct: 401 EKCPACQTILEKQPGE-------VDYFCLNPNCREQKIQKLIHFVSKNAMDINVLGEQTI 453

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             FF        I  P+D++ L++ +      ++ + GFG   +TN+ D+I   +    E
Sbjct: 454 IAFFDKN----LIAKPSDLYLLKKHKHI----LQEMPGFGAKKITNILDAIEASKQKGFE 505

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             +F+LGI+H+G ++++ LAK++ + +N  Q    +          + ++  +G  IAQ+
Sbjct: 506 DVLFALGIKHIGKKVSQVLAKHFQTIENLQQATPEL----------ITQIREIGIKIAQS 555

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQEY 669
           I +++ N  N+  V  L          + +N    +   NKK+V TGTLQK  R + Q+ 
Sbjct: 556 IQQYFSNSCNLEEVSKLKTLGVSFQSTNPQNPTTQTIFTNKKIVLTGTLQKYSRLQIQQI 615

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + Q+GA+++  LS + + +IVG N GSKL KAQ+L + I+ E++   +++
Sbjct: 616 LEQMGAIITNSLSLQNNYLIVGINAGSKLTKAQKLQIPIIEEKELQQIIE 665


>gi|315637028|ref|ZP_07892251.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri JV22]
 gi|315478564|gb|EFU69274.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri JV22]
          Length = 648

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 217/707 (30%), Positives = 356/707 (50%), Gaps = 61/707 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+    +  L        + YY +  PI  D EYD L R C A     P L+    P
Sbjct: 1   MTKEEYDLNIEKLIS----WANAYYVFDNPIATDEEYDKLARLCLAYEQENPKLSH---P 53

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  ++GG +     K +H     S E ++N ++L  +I R  +      + ++ F  +
Sbjct: 54  NSPNKRVGGIVLDGFIKASHLSRMWSQEDVFNTQELEDWIKRASKV-----NTNLQFFCQ 108

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK DG  + + YE G    A  RGDG  GEDV+   + I +IP  +      +IE+RGEV
Sbjct: 109 PKFDGASLNLIYENGILKQAITRGDGTVGEDVTNNAKTIFSIPLEIEE--KSLIEIRGEV 166

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            I K DF  +N E    G + +ANPRNAA+G LR+L+      R L F V G+G+ + + 
Sbjct: 167 VIKKADFEKINIERAKNGEQLFANPRNAAAGSLRQLDSNITAKRKLFFNVWGIGQ-NSLE 225

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   E+++ +  LGF        A+    I + Y++  SIR+     +DG+V K+D+  
Sbjct: 226 HKKYSEIMEYIYSLGFERPQMQTLASNIEEIENLYHKFISIRNDFEMMLDGMVIKIDDIE 285

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG   + PRW  ++KF   + +T+L  I +Q+GRTGI+TPVA +EP  I G+ ++ 
Sbjct: 286 TQEELGYTVKFPRWSCAYKFPAVEKTTKLKAITLQVGRTGIITPVAEVEPTLIDGSTVSR 345

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L           D+++ D V++ ++G++IPK+  +    R  D    S 
Sbjct: 346 ATLHNFDEIERL-----------DLKINDEVIIIKSGDIIPKITKVFFERRKGDEITISR 394

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S V+ +                 L C ++ +  + +F S++  NI+GLG + 
Sbjct: 395 PTSCPTCNSEVLDEG---------TMIKCQNLDCPSRVVNSIIYFASKNCMNIDGLGNKI 445

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  F  +     I    DI++L+            + GF +  + NL  +I   R   L
Sbjct: 446 VEQLFNEKK----IYDILDIYSLKYEDLQD------LEGFKEKKINNLLKAIENTRGSEL 495

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R I +LGI H+G   ++ +   +             +   N D+ SLI +   G+ +A 
Sbjct: 496 HRVINALGIEHIGEVASKQICLEFG------------LDVINKDYDSLIALDGFGEQMAN 543

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           + +EF +   N   VE L+  ++P +   ++   +  +NK +V TGT+ K  R + +  +
Sbjct: 544 SFIEFMRV--NKNLVEKLISIINPKVEIKKEVSENPFKNKTVVITGTMSK-SRGEIKSML 600

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             LGA VS+ +S+KTD +I G++ GSK +KA +LGVK++ EE+   L
Sbjct: 601 EDLGAKVSSGVSKKTDYVIFGEDAGSKYDKAIELGVKLLTEEEMNSL 647


>gi|330813743|ref|YP_004357982.1| DNA ligase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486838|gb|AEA81243.1| DNA ligase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 672

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 241/713 (33%), Positives = 399/713 (55%), Gaps = 49/713 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           SI+  +K+L    + ++ +D  YY+   P I D EYD +K++                  
Sbjct: 4   SIDDYKKKL----KLLNQYDHNYYETDSPKITDGEYDEIKKKLLEFEKKNSQYKFV---- 55

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
              NK+G   +    KV H+   LSL   ++IED+  F  +I  +   +    I    EP
Sbjct: 56  --SNKVGFAPSKKFSKVKHTEKMLSLGNAFSIEDMNGFYKKIKNYLNYEAGQDIILVAEP 113

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191
           KIDG   ++ Y+ G  V    RGDG  GE+++  +  IP IP +++  N P+++E+RGEV
Sbjct: 114 KIDGISASLLYQNGILVQGLSRGDGEYGEEITENLMTIPDIPKKIIYKNFPKLMEIRGEV 173

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250
           YI K DF  +           +ANPRNAA G LR+ +        L FF +   +++   
Sbjct: 174 YIGKKDFKNI--------ENNFANPRNAAGGSLRQKDFKKTAAIPLKFFAYSTIQSNYSH 225

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            + QYE L+ ++   F  N   R       +   YN+++ +RS L YDIDG+VYK+++ +
Sbjct: 226 FQSQYEFLEFLKYSNFKTNPLSRIIKNIKELEKNYNDLEQLRSGLDYDIDGIVYKINDLN 285

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQK+LG  + SPRW I+HKF+ ++A T++ DI+IQ+GRTG LTPVA+++P+N+GG +++N
Sbjct: 286 LQKRLGNLSNSPRWAIAHKFSAEKAFTKINDIEIQVGRTGALTPVAKVDPINVGGVMVSN 345

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED I             +DIR+GD V ++RAG+VIP+VV + +++R    + ++F
Sbjct: 346 ATLHNEDEIIR-----------KDIRIGDTVCIQRAGDVIPQVVYVDLSKRGRKTEAYNF 394

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           P+ CP   +  +++ N  + K+ A  RC      CS    E+LKH +S+DA NI+G GK+
Sbjct: 395 PAKCPC-GNDTIKEYNEISKKIDAVRRCPDVGYECSYMAKEKLKHLISKDALNIDGFGKK 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +D F+  +     I++P+DIF L  +       I+ + G+G++S  NL  SI K + +S
Sbjct: 454 VVDNFWNLK----LIKVPSDIFKLDYK------AIKELEGWGELSCNNLIKSIEKSKTLS 503

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L +FI+++GIRH+G E A+ LA Y+ S   F +      +    +  +LI +  +G+   
Sbjct: 504 LTKFIYAIGIRHIGQENAKILASYFKSITKFKKLF--APSLIKAELNNLIEIDGIGETQI 561

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +A+  F+ N +NI  +  L++ +  S   +    S    NK L+FTG   K+ R +A+  
Sbjct: 562 KALEIFFSNKKNIKVINDLVECLQISNFENI--TSGIFTNKTLMFTGGFSKMSRSEAKTL 619

Query: 670 VTQLGAVVSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               G  V   +S+K + ++VGD+    +K++KA+ L V+I++E+++  LL++
Sbjct: 620 AESQGGKVLGSISKKLNYLVVGDSKPTNNKVQKAKDLQVEIISEKKWHELLKR 672


>gi|32267302|ref|NP_861334.1| NAD-dependent DNA ligase LigA [Helicobacter hepaticus ATCC 51449]
 gi|81665265|sp|Q7VF74|DNLJ_HELHP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|32263355|gb|AAP78400.1| DNA ligase [Helicobacter hepaticus ATCC 51449]
          Length = 650

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 222/710 (31%), Positives = 366/710 (51%), Gaps = 61/710 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ ++   ++  L++        YY   +PI  D +YD+L  +        P L    D 
Sbjct: 1   MTSQEYYTQVQILKKM----AYHYYVLDEPIATDEQYDSLYHQIVRFEEENPHLI---DA 53

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G     S  K TH     SLE ++N ++L +++ RIY+ +         FT  
Sbjct: 54  SSPTQRVGDVPLESFSKNTHLERMWSLEDVFNYDELVEWVQRIYKSY-----PQATFTCS 108

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK DG  + + Y++GK V A  RGDG  GE V+   + I +IP  L +N  E IE+RGEV
Sbjct: 109 PKFDGASLNLLYQEGKLVSATTRGDGVIGELVTHNAKTIQSIP--LEINYKEEIEIRGEV 166

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            I+K DF  +N + ++     +ANPRNAA+G LR+L+      R L F   G+G    I 
Sbjct: 167 VIAKEDFEYINQDRLSENLSLFANPRNAAAGSLRQLDAKITAKRKLRFMPWGIGAGL-IR 225

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            +  YE    +  LGF     +    +   I + YN + S R+  P  +DG+V  +D+ +
Sbjct: 226 FESFYEAFNTITRLGFAPVPFLSYCESIESIQNAYNVLFSQRNNYPIMLDGMVIMLDKIA 285

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG   +SPR+  ++KF   + S+++L + +Q+GRTGI+TPVA L+PV I GA+I+ 
Sbjct: 286 SQQQLGWTIKSPRFACAYKFPAVEKSSKILSVSLQVGRTGIITPVAELKPVEIEGAMISR 345

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN   I+            +DIR+GD V++ R+G+VIPK++  +V  R    +  S 
Sbjct: 346 ATLHNFSEIER-----------KDIRLGDEVIIIRSGDVIPKIIKPLVALRDGTQKVISK 394

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C   ++ +                 L+C A+ +E + HF S+ A NI+GLG++ 
Sbjct: 395 PTHCPVCGEELLLED---------IFIKCQNLSCEARVIESIIHFASKKALNIDGLGEKI 445

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   +++      +R   DI+ L      S  ++  + G+ +    NL  +I     + L
Sbjct: 446 VIQLYENA----FVRNIKDIYAL------SIQQLLTLEGWQEKRANNLIYAIQNTIGVEL 495

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI +LGI H+G   ++ LA+ +             +     +   ++ V   G+ +A 
Sbjct: 496 WRFINALGIEHIGEGASKKLAQKFG------------LNVFELELSEILSVDGFGEEMAY 543

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++VEF  N  N   +  LL  + P +   E + ++   NK +V TGTL +  R +  + +
Sbjct: 544 SLVEF--NHANKTLIAELLCIIKPKVELLEIDNNNVFFNKTIVLTGTLSQ-PRDRIIKLL 600

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
              GA +S+ +S+KTD +I G+  GSKLEKAQ L +  +NEE+FL  + +
Sbjct: 601 ESKGAKISSSVSKKTDFVIYGEKAGSKLEKAQSLNITTLNEEEFLAQINK 650


>gi|237742800|ref|ZP_04573281.1| NAD-dependent DNA ligase [Fusobacterium sp. 4_1_13]
 gi|229430448|gb|EEO40660.1| NAD-dependent DNA ligase [Fusobacterium sp. 4_1_13]
          Length = 696

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 215/711 (30%), Positives = 360/711 (50%), Gaps = 50/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L +++  + + YY  +  +I D E+D L +  +++   +P        + P   +
Sbjct: 29  EKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYPQYKEI---SSPTTSV 85

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G  +      KV H+ P LSL   +NI ++  FI RI +   K+    + + LE K+DG 
Sbjct: 86  GASLKENKFKKVEHTHPMLSLANSYNIGEIVDFIERIKKKIPKE--QELKYCLEVKLDGL 143

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV +    
Sbjct: 144 SISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIIKTLPQAI--DMEIRGEVVLPLAS 201

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E +  G + +ANPRNAASG LR+L+      R L+ + + L +  ++  K   E
Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKDRGLDAYFYFLVEADKLGLKSHSE 261

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  +G           T   I    N  +  R  LPY+ DGLV KVDE  L  ++G
Sbjct: 262 SIKFLESMGIKTTGIFELLETSKEIEMRINYWEKERENLPYETDGLVIKVDEIHLWDEIG 321

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF   Q ST L D+  Q+GRTG LTPVA  + V + G+ +  A+LHN 
Sbjct: 322 YTSKAPRWAIAYKFPALQISTVLNDVAWQVGRTGKLTPVALFKEVELAGSKVERASLHNI 381

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+GDRV +K+A E+IP+VV  I  +R  + +    P+ CP+
Sbjct: 382 SEIQK-----------KDIRIGDRVFIKKAAEIIPQVVKAIKEDRTGNEKIIKEPTHCPV 430

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++ R+      K            C  +    +++FVS+DA NI GLG + ++ F  
Sbjct: 431 CNHKLEREEGLVDIK-------CVNEECPGKNQAEIEYFVSKDALNIMGLGSKIVEKFID 483

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DIF L+  ++     +ENI   G+ S+ NL +SI + +N   ++ I S
Sbjct: 484 ----LGYIKTVVDIFDLKNHKE----DLENIDKMGERSIENLLNSIEESKNRDYDKVICS 535

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG+  +G   +++LAK   +                  +  L  +  +G   A  I+ F+
Sbjct: 536 LGMPLIGKVASKALAKASKNIDKLM----------TMSFEELTSIDGIGKKAANEIIAFF 585

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
              +N   ++ L ++      +  +    N++     K  +FTGTL+   R + +E + +
Sbjct: 586 TKEKNQKIIQGLKEKGLKFEIKESETNVQNINPNFAGKNFLFTGTLKHFTREQIKEEIEK 645

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|294783065|ref|ZP_06748389.1| DNA ligase, NAD-dependent [Fusobacterium sp. 1_1_41FAA]
 gi|294479943|gb|EFG27720.1| DNA ligase, NAD-dependent [Fusobacterium sp. 1_1_41FAA]
          Length = 696

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 218/711 (30%), Positives = 365/711 (51%), Gaps = 50/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L++++  + D YY  ++ +I D E+D L +  +++   +P+   +   + P   +
Sbjct: 29  ERIVKLKEDLDKYRDSYYNDNESLISDYEFDILLKELESLEEKYPEYKEA---SSPTESV 85

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G  +      KV H  P LSL   +NI ++  FI RI +   K+    + + LE K+DG 
Sbjct: 86  GASLKENKFKKVEHEHPMLSLANSYNIGEVVDFIERIKKRISKE--QELKYCLEVKLDGL 143

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +GK V A  RGDG  GEDV+  I  I ++ + L   I   IE+RGE+ +    
Sbjct: 144 SISLTYIQGKLVRAVTRGDGFIGEDVTENILQIASVVKTLPQAI--DIEIRGEIVLPLAS 201

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYE 256
           F  LN E +  G + +ANPRNAASG LR+L+P  +    L+ + + L +  ++  K   E
Sbjct: 202 FEKLNKERLEKGEELFANPRNAASGTLRQLDPEIVKERALDAYFYFLVEADKLGLKSHSE 261

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  +G               I    +  +  R  LPY+ DGLV KVDE +L  ++G
Sbjct: 262 SMKFLESMGIKTTGIFELLENSKDIEKRIDYWEKERENLPYETDGLVIKVDEINLWDEIG 321

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF   Q ST L D+  Q+GRTG LTPVA LE V + G+ +  A+LHN 
Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNI 381

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+GDRV +++A E+IP+VV  I  ER  + +    P  CP+
Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKTIEEPINCPV 430

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++ R+      K            C A+    +++FVSRDA NI GLG + ++ F  
Sbjct: 431 CNHKLEREEGLVDIK-------CVNEECPAKIQGEIEYFVSRDALNIMGLGSKIVEKFID 483

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DI+ L+  ++    ++ENI   G  S+ NL +SI + +N   ++ I++
Sbjct: 484 ----LGYIKTVVDIYDLKNHRE----ELENIDKMGKRSIENLLNSIEESKNREYDKVIYA 535

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   ++ LAK   +               +  +  L  +  +G+I A  I+ F+
Sbjct: 536 LGIPFIGKVASKVLAKASKNIDKLM----------SMTFEELTSIEGIGEIAANEIIVFF 585

Query: 617 QNPRNICAVEALLKEVSPSI----GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           +  +    V AL ++             +N++     K  +FTGTL+   R + +E + +
Sbjct: 586 KKEKTQKLVAALKEKGLKFEIAESEIKVENLNPNFAGKNFLFTGTLKHFTREQIKEEIEK 645

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           LG    + +S+  D +IVG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696


>gi|254458916|ref|ZP_05072339.1| DNA ligase, NAD-dependent [Campylobacterales bacterium GD 1]
 gi|207084187|gb|EDZ61476.1| DNA ligase, NAD-dependent [Campylobacterales bacterium GD 1]
          Length = 653

 Score =  453 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 203/712 (28%), Positives = 362/712 (50%), Gaps = 62/712 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E  +K +    ++++ +   YY    PI  D  YD L                +   
Sbjct: 1   MNLEDYKKAV----EQLNLYSHHYYVLDDPITTDEVYDKLYHEVVRFEENN---KNAVLY 53

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G  ++    K +H     SLE I++ E L K++T+ Y+      D++I F  E
Sbjct: 54  SSPSQRVGDAVSSGFTKASHLSRMWSLEDIFDSEGLEKWLTKTYKL-----DSNISFYCE 108

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK DG  + + YE G+ V    RGDG  GE ++  ++ I +IP  L++   E IE+RGEV
Sbjct: 109 PKFDGASLNLVYENGELVQGITRGDGSVGELITQNVKTIRSIP--LTIAHKERIEIRGEV 166

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            I K++F  +N+  +  G   +ANPRNAA+G LR+L+ +   +R L F  +G+G+ S  +
Sbjct: 167 VIFKDEFDKINEARLKAGEAVFANPRNAAAGSLRQLDSSITASRNLVFLPYGVGEDSLEY 226

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   + +  +  LGF           +  I + Y  MK+ R + P  +DG+V KV+E +
Sbjct: 227 -KLLSDKMAYIYELGFRKPPASSTCKGYDEIEAIYEVMKNDRDSYPMMLDGMVIKVNEIA 285

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q  +G   ++PR+ +++KF   +  T +  I +Q+GR+G +TPVA++EP +I G ++  
Sbjct: 286 SQIDMGYTVKNPRFSVAYKFPAVEKITTIRAIVLQVGRSGAVTPVAQVEPTDIDGVVVER 345

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I             +DIR+ D+V++ R+G+VIPK++ ++ +ER     P+  
Sbjct: 346 ATLHNFDEIDR-----------KDIRLNDKVIILRSGDVIPKIIKVLTHERDGSEVPYER 394

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S ++ +                 L C A+ +  + +F S+   NI+GLG + 
Sbjct: 395 PTLCPVCDSELLDEG---------VLLKCQNLECEARVVNSIIYFASKPCLNIDGLGNKI 445

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  F     +  ++   D+F L      +  K+  + GF +    NL +S+   +    
Sbjct: 446 VEALF----VSGLVKSVVDLFDL------TLDKLLALEGFKEKKSQNLLNSLEAAKGCDY 495

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI SLGI HVG   +++L++ + S  +F                 ++    +G+ +A+
Sbjct: 496 WRFINSLGIEHVGEVASKTLSENFGS--SFIDATK----------EEIVACDGIGEEMAE 543

Query: 611 AIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +++EF +   N   +  L + + P    +  + V +  + K  V TGT+ +  R   +E 
Sbjct: 544 SVLEFVRV--NRETILNLQEILKPLEPVQKAEAVENPFKGKTAVLTGTMSE-SRGAIKEM 600

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           + + GA VS  +S+KTD +I G++ GSK +KA  LGV+ + E++    + + 
Sbjct: 601 LEEFGAKVSGSVSKKTDFLIYGEDAGSKYDKAMSLGVECLTEDEMRSKISEN 652


>gi|88855225|ref|ZP_01129890.1| DNA ligase [marine actinobacterium PHSC20C1]
 gi|88815753|gb|EAR25610.1| DNA ligase [marine actinobacterium PHSC20C1]
          Length = 775

 Score =  453 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 211/783 (26%), Positives = 349/783 (44%), Gaps = 102/783 (13%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +  AR E+ +L   I    D YY+  + ++ D+EYD L +R + +    P+L   +  + 
Sbjct: 26  LAAARDEVGTLSTRILELRDAYYERDEVLVDDAEYDELIQRLERLEREHPEL---QSQDS 82

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG+       V H+   LSL+ +++IE+   +  ++ R        ++ F  E K
Sbjct: 83  PTLRVGGKAAALFDPVEHAERMLSLDNVFSIEEFADWAAKVQR----DSARAVDFLCELK 138

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           IDG  I +RY  G  V AA RGDG  GEDV+  +  +  IP+ L+    P ++EVRGEV+
Sbjct: 139 IDGLAINLRYIDGVLVSAATRGDGRVGEDVTENVVRVDGIPQRLAGTGHPPMVEVRGEVF 198

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL----------NPTDITRYLNFFVHG 242
           I    F  LN E   +G K +ANPRNAA+G LR+           +       L   VHG
Sbjct: 199 IPLELFRELNAEQTRIGEKVFANPRNAAAGSLRQKSEGKSDEKLSHMRRRLASLRMLVHG 258

Query: 243 LGKTS-----EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           +G        +   + Q ++   +   G P +   R  ++      +       R ++ +
Sbjct: 259 IGAWDGARDGQDPIRSQSDVYGVLATWGLPTSTHFRVVDSADKAADFIRYFGEHRDSVEH 318

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KVDE +L  +LG  +R+PRW I++K+  +Q +T+LLDI + IGRTG  TP A 
Sbjct: 319 EIDGIVIKVDELALHDELGATSRAPRWAIAYKYPPEQVNTKLLDIVVGIGRTGRATPYAV 378

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           +EP  + G+++  ATLHN+D +K            + + +GD V++++AG+VIP+++  +
Sbjct: 379 MEPALVAGSVVRQATLHNQDVVKR-----------KGVLIGDTVVLRKAGDVIPEILGPV 427

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
              R      F  P+ CP C + +         +     RC    +C AQ   R++H  S
Sbjct: 428 EELRDGSEYAFVMPTLCPECGTPLRPM-----KEGDIDLRCPNARSCPAQVRGRIEHAGS 482

Query: 478 RDAFNIEGLGKQQLDFFFKSEDP---------AFSIRIPADIFTL--------------- 513
           R   +IE LG+       +  +P                 DIF +               
Sbjct: 483 RGGLDIEVLGEVVARALAQPLEPEVPPLINEAGLFDLTVEDIFPIVIAVRDSETGEVITD 542

Query: 514 -----------------------QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                                        +     +       +   L  ++ + +   L
Sbjct: 543 DDGTDRTISPFRRVRKSSGAGADPAFDPNAELFSGSADAVPSSNAIKLIANLQEAKTKPL 602

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R + SL IRHVG   AR+LA Y+ S +                   L  V  VG IIA 
Sbjct: 603 WRLLVSLSIRHVGPVAARALADYFGSLEAIRTA----------KREELAAVDGVGQIIAD 652

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR------HEKNVSSEIENKKLVFTGTLQKIQRH 664
           +++E+++   +   V+   +                ++    +    +V TG+L    R 
Sbjct: 653 SVIEWFEVDWHQEIVQRWAEAGVQWSTPGHPGPGAAQSKDGLLAGLTIVATGSLDGFTRE 712

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
            AQE +   GA  ++ +S+KTD +  G   GSKL KA++LG+ I++  QF  LL++  + 
Sbjct: 713 GAQEAIIAAGAKAASSVSKKTDYVAAGPGAGSKLTKAEELGITILDAAQFARLLEEGPSA 772

Query: 725 LRI 727
           L  
Sbjct: 773 LDK 775


>gi|330444629|ref|YP_004377615.1| DNA ligase [Chlamydophila pecorum E58]
 gi|328807739|gb|AEB41912.1| DNA ligase, NAD-dependent [Chlamydophila pecorum E58]
          Length = 666

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 230/705 (32%), Positives = 368/705 (52%), Gaps = 50/705 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
             +++    L QE+  HD  YY    P+I D +YD   R    I    P+      P  P
Sbjct: 8   SDSQEYYLELCQELEKHDYQYYVLHAPLISDYDYDMKMRELQLIEKQHPEW---RVPWSP 64

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G   +  L  V H  P LS+   ++ E+L +F +R+ +           +T+E KI
Sbjct: 65  TLRLGDRPSGELEIVDHKYPMLSIANGYSEEELEEFFSRVEKSLGHVPY----YTIELKI 120

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  + IRYE    V A  RG+G  GED++  IR I  +P  L    PE +EVRGEV+  
Sbjct: 121 DGIAVAIRYEDRILVQAMSRGNGKQGEDITTNIRTIRALPLRLPEESPEFLEVRGEVFFK 180

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKG 253
           +  F  +N +  A+ +  +ANPRNAA G L+ L+      R L   ++ +   +E  +  
Sbjct: 181 RAVFDEINAKQRALKKPEFANPRNAAGGTLKLLSAEKVAERKLEISIYSV--LAEELSDS 238

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             + L+  R  G  V    R   +   +  +  E+K +RS LP +IDG+V KVD    Q+
Sbjct: 239 HCDSLECCRQWGLSVQGMPRLCRSKEEVFVFLEEIKQLRSQLPMEIDGVVIKVDSIKDQQ 298

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG   +  RW +++K+A +QA T L DI +Q+GRTG+LTPVA+L PV + G+LI+ A+L
Sbjct: 299 SLGSTGKHYRWALAYKYAPEQAETVLEDILVQVGRTGVLTPVAKLRPVFLSGSLISRASL 358

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           +NE+ I+            +DIR+GD V++++ GEVIPKVV +++ +R  D+Q +  P  
Sbjct: 359 YNEEEIRR-----------KDIRIGDTVVLEKGGEVIPKVVGVVLGKRPEDSQSWQMPEH 407

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CPIC   VVR+ N          RC     CS   +E+++ F  R A +IE LG++ ++ 
Sbjct: 408 CPICHGDVVREGNK------VCVRCMNP-TCSGGTIEKIRFFAGRSALDIEYLGEKVINK 460

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F        +   +DIF+L +R          + GF + SVTN+  SI K +N+ L+RF
Sbjct: 461 LFD----MGLLHSCSDIFSLTKRDL------LQVPGFREKSVTNILKSIEKAKNVFLDRF 510

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           + +LGI +VG  +A SLA+++ S +         +                 D +A +I 
Sbjct: 511 LVALGIPYVGIGVASSLAEHFGSLERVISASEEELLEIEGIG----------DKVAVSIK 560

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           E+++NP+++  +E +L         H    SS  + K  V TG    I R   +  +   
Sbjct: 561 EYFENPKHLEEIEKMLDFGVKVAPSH--KSSSICQGKTFVITGAFAGITRSDIERTIRNC 618

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           G  VS+ +S++TD ++VG++PGSKL+KAQ+LG+ +++++    +L
Sbjct: 619 GGKVSSSVSKQTDYLVVGEDPGSKLKKAQELGIPLLDQDSLQKIL 663


>gi|254453419|ref|ZP_05066856.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 238]
 gi|198267825|gb|EDY92095.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 238]
          Length = 661

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 277/667 (41%), Positives = 394/667 (59%), Gaps = 54/667 (8%)

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL   +  +D+ +F   + +F    +  ++ FT EPKIDG  +++RYE GK V AA R
Sbjct: 1   MLSLGNAFTDDDVSEFDKSVRKFLGL-ETGALAFTAEPKIDGLSLSLRYEFGKLVQAATR 59

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GE+V+A  R I  +P++L    P+I+EVRGEVY+S  DF ALN      G K +A
Sbjct: 60  GDGAVGENVTANARTIHDVPQLLDDA-PDILEVRGEVYMSHADFEALNARQSKAGAKTFA 118

Query: 215 NPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G LR+L+ +   +R L FF +  G+ S   A  Q   + +++ LGF  N   +
Sbjct: 119 NPRNAAAGSLRQLDVSVTKSRPLKFFAYAWGEVSAPLADTQSGAIARLKTLGFQTNPLTQ 178

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
                  ++++Y +++S R+TL YDIDG+VYKVDE +LQ +LG R+ +PRW I+HKF  +
Sbjct: 179 ICTGPSDMIAHYRDIESQRATLGYDIDGVVYKVDELALQARLGFRSTTPRWAIAHKFPAE 238

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
            A T L  IDIQ+GRTG L+PVARL PV +GG +++NATLHNEDYI G    G  +RGG+
Sbjct: 239 LAWTTLDAIDIQVGRTGALSPVARLSPVTVGGVVVSNATLHNEDYIAGRGNKGDDIRGGK 298

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIRVGD V + RAG+VIPKV D+ + +R  +A PF FP+ CP C S  VR+         
Sbjct: 299 DIRVGDWVQIYRAGDVIPKVADVDLTKRPVEATPFDFPTTCPKCGSDAVREEG------D 352

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
              RCTGGL C AQ +E+LKHFVSR AF+I+GLG +Q++ F+   D   +I+ PADIFTL
Sbjct: 353 VVRRCTGGLICPAQAVEKLKHFVSRAAFDIDGLGAKQVEAFYN--DDQLAIKEPADIFTL 410

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
           Q R   S TK+ N  G+GD SV  L+ +I+++R ISL R IF+LGIRHVG   A+ LA++
Sbjct: 411 QARDLDSFTKLANRDGWGDTSVKKLWQAIDEKREISLARLIFALGIRHVGEVTAQDLARH 470

Query: 574 YLSYQNFAQEIN----NIIAHNNDDWLS-------------------------------- 597
           Y +++  A+ +       IAH   D                                   
Sbjct: 471 YGTWEVLAENVKLGRPAAIAHRAADEAEADERFIADRDGRRPRVSEARKLAIANAGLSRT 530

Query: 598 -------LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
                  LI    +G  +A +  +   N     A+EAL++++   I    +  +S +  K
Sbjct: 531 ATKAWAFLIDADGIGATVALSFSDALSNAEESKAIEALIQQLDTIIAPQTQASNSPVAGK 590

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +VFTGTL+K+ R +A+     LGA VS  +S KTD++I G   GSK +KA   G++ ++
Sbjct: 591 TVVFTGTLEKMTRAEAKARAESLGAKVSGSVSAKTDLLIAGLGAGSKAKKAADFGIETLS 650

Query: 711 EEQFLFL 717
           E+ +L L
Sbjct: 651 EDGWLAL 657


>gi|302670775|ref|YP_003830735.1| NAD-dependent DNA ligase LigA1 [Butyrivibrio proteoclasticus B316]
 gi|302395248|gb|ADL34153.1| NAD-dependent DNA ligase LigA1 [Butyrivibrio proteoclasticus B316]
          Length = 675

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 202/725 (27%), Positives = 339/725 (46%), Gaps = 64/725 (8%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  ++ E+ R    +L  EI +H D YY   +P I D EYD L  R   +   +P+L   
Sbjct: 1   MSQIT-EEIRNNYDALVSEIKHHMDLYYNQDEPEISDYEYDQLMIRLKKMESEYPELV-- 57

Query: 69  EDPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              + P   +GG     +  K+TH++P LS+E ++  E + +++T+++            
Sbjct: 58  -SNDSPSQIVGGVAKREAGVKITHNVPMLSIEDVFTTEAVSEWVTKVH-----ALHPGAL 111

Query: 128 FTLEPKIDGTMITIRYEKG------KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
           F+ E KIDG  +++RY K           A  RGDG  GEDV+A    IP + RV+ L  
Sbjct: 112 FSAEIKIDGLSMSLRYRKSPEDDKLHLELAETRGDGLIGEDVTANALMIPDVKRVIDLPY 171

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240
             + E+RGEVY+S  +F   N+E    G+K  ANPRN A+G LR+L+PT    R L  FV
Sbjct: 172 DYL-ELRGEVYMSHENFEKFNEEQEKSGKKIAANPRNLAAGTLRQLDPTITRDRGLRMFV 230

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
             +    +   +   + L+ +   G PV    +Q +    +++   E  ++R  L YD+D
Sbjct: 231 FNIQDGPQELMESHCKGLEILANAGVPVVFH-KQCSDTQEVIAAITEFGNMRENLEYDLD 289

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G V KVD  + +      ++     I++K+  ++    + +I + +GRTG LT       
Sbjct: 290 GAVIKVDHTAWRDDFPAGSKYSSGHIAYKYPPEERVVVMDEIIVDVGRTGKLTFTGSFHD 349

Query: 361 V------NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
                   + G  ++ ATLHN+DYI  +            I +G    + ++GE+IPK+ 
Sbjct: 350 RETGKPARLCGTSVSRATLHNQDYINEMQ-----------IGIGGEYKLFKSGEIIPKLN 398

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +          +  P  CP+C S +VR+ +       A  RC     C AQ    + +
Sbjct: 399 GCVKAP----EIVYKAPEHCPVCGSLLVREED------TADIRCINP-TCPAQVTRTIAY 447

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           F SRDA NI GLG   +D           ++  ADI+TL R +     K          +
Sbjct: 448 FTSRDAMNIMGLGDTLVDALVSE----GYLKTYADIYTLGRHRDELIEKGII---GKVKN 500

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
              L   I K +     R +  L IR+VG   AR + K++          ++++      
Sbjct: 501 TDKLLGEIEKSKENDPVRLLTGLAIRNVGKSTAREIMKHF----------DDLMELTKVT 550

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
               +++P +G+  A  + EF+ +  N+  +E +             + S ++    +V 
Sbjct: 551 REGFLQIPDIGETTANDLYEFFHDEHNLQILEQMNSLGLNMKVVESNDSSDKLSGMTIVV 610

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           TGTL  + R +A+E + + G   S  +S+KT +++ G+  GSKL KA  LG+K++NE +F
Sbjct: 611 TGTLPTLGRKEAEELIVKNGGKASGSVSKKTSLVLAGEAAGSKLTKANDLGIKVINEAEF 670

Query: 715 LFLLQ 719
           L +++
Sbjct: 671 LEMIK 675


>gi|78777542|ref|YP_393857.1| NAD-dependent DNA ligase LigA [Sulfurimonas denitrificans DSM 1251]
 gi|123768611|sp|Q30QV9|DNLJ_SULDN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78498082|gb|ABB44622.1| DNA ligase (NAD+) [Sulfurimonas denitrificans DSM 1251]
          Length = 652

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 199/705 (28%), Positives = 354/705 (50%), Gaps = 58/705 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +++     + ++ +   YY     I  D  YD L         +  +       N P  +
Sbjct: 3   KEQYIKAVELLNLYSYHYYVLDDAITTDEVYDKLYHEVLEYEESHKEDILK---NSPTQR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  ++    K  H     SLE +++ + L+K++ + Y+      D++I F  EPK DG 
Sbjct: 60  VGDTVSEGFSKAPHLSRMWSLEDVFDSDGLQKWLIKTYKL-----DSNISFYCEPKYDGA 114

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G+   A  RGDG  GE ++  ++ I ++P  LS+   E IE+RGEV I K++
Sbjct: 115 SLNLIYENGELSQAITRGDGEVGELITQNVKTIRSVP--LSIEHKEKIEIRGEVVIFKDE 172

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N   +  G   +ANPRNAA+G LR+L+ +   +R L F  +G+G  + +  K   +
Sbjct: 173 FEKINQTRLKDGEALFANPRNAAAGSLRQLDSSITASRNLVFLPYGVG-ENFLEHKLLSQ 231

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  LGF           F+ I + Y EM   R + P  +DG+V KVDE + Q  +G
Sbjct: 232 KMEYIYSLGFKKPPFCATCKDFNEIEAVYQEMSRNRDSYPMMLDGMVVKVDEIAAQIDMG 291

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              ++PR+ +++KF   +  T + +I +Q+GRTG +TPVA +EP NI G ++  ATLHN 
Sbjct: 292 YTVKNPRFSVAYKFPAVEKITTIKEIILQVGRTGAVTPVAIVEPTNIDGVVVERATLHNF 351

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+ D V++ R+G+VIPK++ ++ +ER      +  P+ CP+
Sbjct: 352 DEIQR-----------KDIRINDHVIILRSGDVIPKIIKVLTHERDGSEVEYKRPTICPV 400

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C+S ++ +                 L C A+ +  + +F S+   NI+GLG + ++  F 
Sbjct: 401 CESELLDEG---------VLLKCQNLTCEARVINSIIYFASKPCLNIDGLGVKIVEALFN 451

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           S      ++   D+F        +  K+  + GF +    NL D++   +     RF+ S
Sbjct: 452 S----GLVKSVVDLFD------LTLEKLLTLEGFKEKKAQNLLDALGSAKGCEYWRFVNS 501

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   +++L+  + S   F                 ++    VG+ +A++++EF 
Sbjct: 502 LGIEHIGEVASKTLSAKFGS--GFIDATK----------DEIVACDGVGEEMAESLLEFI 549

Query: 617 QNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +   N   +  L   + P    + ++   +  + K +V TG++ +  R   +E +  LGA
Sbjct: 550 RV--NRETILKLQNILKPLEPLQRQEAKENPFKGKSVVLTGSMSE-SRDMIKEMLESLGA 606

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            V + +S+KTD +I G++ GSK +KA  LGV+ +NE++    ++Q
Sbjct: 607 KVVSSVSKKTDFVIYGEDAGSKYDKAMDLGVECLNEDEMRSKIEQ 651


>gi|185178794|ref|ZP_02554752.2| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|188024241|ref|ZP_02569990.2| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188518556|ref|ZP_03004016.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|209554205|ref|YP_002284543.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225551582|ref|ZP_03772528.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|254781448|sp|B5ZAV3|DNLJ_UREU1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|184209414|gb|EDU06457.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|188018900|gb|EDU56940.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188997873|gb|EDU66970.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|209541706|gb|ACI59935.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225379397|gb|EEH01762.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
          Length = 673

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 215/712 (30%), Positives = 367/712 (51%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + +++ L+Q++   +  YY    P + D  YD   R    + +A+P    +   N 
Sbjct: 1   MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG ++    KV H  P LSL   ++  DLRKF                 + +EPK
Sbjct: 58  PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFDQDNQNASVDLKG----YVVEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           IDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRGEVY
Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251
           ++ +DF  +ND +    +  +ANPRNAA+G LR L+ +    R L+ F++ L    E+  
Sbjct: 174 MAFHDFYEMNDNLEESDK-KFANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K  YE +Q ++   F V++ + + +T   +++  +    +R+ L Y IDG+V K++   +
Sbjct: 233 KTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINNLEV 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++  A
Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIVEYA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+   
Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPYESI 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+    +
Sbjct: 402 TNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSDAII 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F+     A  I+  AD++ LQ+ ++        I    D S +NL +SIN  +  SLE
Sbjct: 456 NKFYD----ANLIKNVADLYYLQKHKEFILASDFKI---KDKSFSNLINSINNSKTRSLE 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             + + GIRHVG  +A+ LAK + +                 ++  L  V   G+  A +
Sbjct: 509 FLLTAFGIRHVGPNLAKKLAKQFKTMTTLMHA----------NFGELTNVDACGEKAALS 558

Query: 612 IVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++ ++ +  N+  V  L +           I     N+  E +NK  V TG+   I R +
Sbjct: 559 LINWFNDDHNVSLVNQLQQVGVNMEYIDDFIYDDNINIIDEYKNKTFVITGSFS-ISRDE 617

Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +  + +   A V   +S+KTD ++ G   G+KLEKA+ LGVKI+ E +F  
Sbjct: 618 IKTILEKYYHAKVKNSVSKKTDYVLAGIEAGTKLEKAKLLGVKII-ENEFWK 668


>gi|310778043|ref|YP_003966376.1| DNA ligase, NAD-dependent [Ilyobacter polytropus DSM 2926]
 gi|309747366|gb|ADO82028.1| DNA ligase, NAD-dependent [Ilyobacter polytropus DSM 2926]
          Length = 677

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 216/718 (30%), Positives = 362/718 (50%), Gaps = 52/718 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++ + ++++I  ++  YY  ++ ++ D EYD L +  + I    P++    D   
Sbjct: 1   MENILEKATKIKEKIDKYNYYYYVKNESLVSDIEYDKLLKELEEIEKKHPEIK---DELS 57

Query: 74  PLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS----IFF 128
           P  ++G  ++     KV H  P LSL   +NI+D+  F  RI +   K  ++       +
Sbjct: 58  PTRQVGSSLSDTKFQKVEHKKPMLSLSNTYNIKDVEDFHQRIDKILGKLKEDESKKITDY 117

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            LE K+DG  I++ Y+ GK V    RGDG  GEDV+  I  I +IP+ L  NI   IE R
Sbjct: 118 ALELKLDGVSISVHYKNGKLVKGVTRGDGTVGEDVTENIMEIKSIPKYLKENI--DIEAR 175

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247
           GE+ +  ++F  LN      G   +ANPRNAASG LR+L+      R L+ + + L    
Sbjct: 176 GEIVLPLSEFKKLNQIRYDKGEDLFANPRNAASGTLRQLDSKIVAERNLDCYFYFLADCD 235

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           ++  +   E ++ +  +G          ++   +       ++ R  L Y+ DGLV KV+
Sbjct: 236 KLGIEKHSESMEFLEKVGLKTTGVCDLCSSIEELEDRIRYWENNRGVLDYETDGLVIKVN 295

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              L  +LG   +SPRW IS+KF  KQ +T L +I  Q+GRTG +TPVA LE V + G+ 
Sbjct: 296 MVELWDKLGATTKSPRWAISYKFPAKQVTTTLKNITWQVGRTGKVTPVAELEEVEVSGSK 355

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+LHN D I             +D+++GDRV +++A E+IP+VV ++   R  + + 
Sbjct: 356 VKRASLHNFDEIIR-----------KDVKIGDRVFIEKAAEIIPQVVKVVKEARTGEEKE 404

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              PS CP C + + R+      +            C A+   ++++FVSRDA NI GLG
Sbjct: 405 IMPPSVCPECGTELGREEGLIDLR-------CPNEKCPAKVRGQIEYFVSRDAMNINGLG 457

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           K+ ++ F +       I+  +DI+ L   +     +++++   G  SV NL  SI   + 
Sbjct: 458 KKIVEKFIE----IGKIKDVSDIYDLHLYKD----ELKSLEKMGAKSVENLLKSIEDSKK 509

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               + ++SLGI HVG  +A  LAK   +    AQ               L+ +  VG  
Sbjct: 510 REYPKSLYSLGIPHVGKFLASLLAKESKNIDKLAQ----------MSIEDLLEIDGVGKK 559

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSEIENKKLVFTGTLQKIQR 663
           +A+++   ++N + +  +E L         +  ++     + E ++K  + TG L+   R
Sbjct: 560 VAESVYGVFRNKKFLERLEKLKNYGVNFKIKEVEDTAEFFNEEFKDKTFLATGKLKHFTR 619

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720
              +EY+  LG    + +S+K D +IVG+  GSKL+KA++L  VKI+ E +FL + ++
Sbjct: 620 EGIKEYIESLGGKNLSGVSKKLDYLIVGEKAGSKLKKAEELKTVKILTESEFLEMTEK 677


>gi|186701986|ref|ZP_02554435.2| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|186700761|gb|EDU19043.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 673

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 215/712 (30%), Positives = 367/712 (51%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + ++  L+Q++   +  YY    P + D  YD   R    + + +P    +   N 
Sbjct: 1   MDKIKAKIDELKQKLDQWNYEYYVLDDPSVPDHVYDQTMRELIELENNYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+GG ++    KV H  P LSL   +N +DL+KF                 + +EPK
Sbjct: 58  PSVKVGGFVSEKFNKVKHKRPMLSLSNAFNDDDLKKFDQDNQNASVDLKG----YVVEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           IDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRGEVY
Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGINGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251
           ++ +DF  +ND +    +  +ANPRNAA+G LR L+ +    R L+ F++ L    E+  
Sbjct: 174 MAFHDFYEMNDNLEESDK-KFANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K  YE +Q +R   F V++ + + +T + +++  +    +R  L Y IDG+V K++   +
Sbjct: 233 KTHYESIQFLRDNKFKVSDLIVKVDTINEVINQIDCYTKVRDKLSYMIDGIVIKINNLEV 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++  A
Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSMVEYA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+   
Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPYEPI 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+    +
Sbjct: 402 INCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSDAII 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F+     A  I+  AD++ LQ+ ++   T    I    + S +NL +SIN  +  SLE
Sbjct: 456 NKFYD----ANLIKNIADLYYLQKHKEFILTSDFKI---KEKSFSNLINSINNSKKCSLE 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             + + GIRHVG  +A+ +AK + +     +           ++  L  V   G+  A +
Sbjct: 509 FLLTAFGIRHVGPNLAKKIAKQFKTMTALMRA----------NFDELTNVDACGEKAASS 558

Query: 612 IVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++ ++ +  N+  V  L +           I     N+  E +NK  V TG+   I R +
Sbjct: 559 LINWFNDEHNVSLVNQLQQVGVNMEYIDDFIYDDNINIIDEYKNKTFVITGSFS-ISRDE 617

Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +  + +   A V   +S+KTD ++ G   G+KLEKA+ LGVKI+ E +F  
Sbjct: 618 IKTILEKYYHAKVKNSVSKKTDYVLAGTEAGTKLEKAKLLGVKII-ENEFWK 668


>gi|315638276|ref|ZP_07893457.1| NAD-dependent DNA ligase LigA [Campylobacter upsaliensis JV21]
 gi|315481623|gb|EFU72246.1| NAD-dependent DNA ligase LigA [Campylobacter upsaliensis JV21]
          Length = 644

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 222/699 (31%), Positives = 352/699 (50%), Gaps = 60/699 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E     +  +     YY+  +P+  D EYD L R   A     P L     P+ P  KI 
Sbjct: 3   EYLKKVELANLWMRAYYEEDEPLASDEEYDRLIREIKAFEKENPSLI---SPDSPTQKIA 59

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
             +     K  H     S+E +++ E+LR +  R              F +EPK DG  +
Sbjct: 60  PTIQSKFKKSRHLSKMWSMEDVFDEEELRAWAKRAR--------CEDGFFIEPKFDGASL 111

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + Y+KG+ V AA RGDG  GEDV+  ++ I  IP++  +N    IE+RGEV I K DF 
Sbjct: 112 NLLYQKGRLVSAATRGDGEIGEDVTLNVKEIANIPQI--INYEGEIEIRGEVVILKEDFE 169

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN++        +ANPRNAASG LR+L+      R L F+  G+GK   +      E++
Sbjct: 170 RLNEKRAKENLSLFANPRNAASGSLRQLDTQITKERNLKFYPWGVGK-HTLSFAKHSELM 228

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             +R LGF  +  VR       ++++Y E+ S+R   P  +DG+V +VD+ +L K+LG  
Sbjct: 229 CFVRELGFLKDEFVRVCKNLDEVLTHYKELLSLRDLKPMMMDGMVVRVDDIALCKELGYT 288

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            + P++M + KF   + STRL+ + +Q+GR+G++TPVA LEPVN+ G ++ +A+LHN D 
Sbjct: 289 IKYPKFMAAFKFPALEKSTRLVGVSLQVGRSGVITPVAVLEPVNLDGVVVKSASLHNFDE 348

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I+ L           ++R+ D V V R+G+VIPK+  +  + R  +A     P  CP+C+
Sbjct: 349 IERL-----------NLRLNDFVSVIRSGDVIPKITKVFKDRRGENALKIERPKLCPVCE 397

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++ +          A      L C A+ +  + +FVS+   NI+GLG+  ++  ++ +
Sbjct: 398 SELLDEG---------ALIKCQNLDCKARLVNSIIYFVSKKCLNIDGLGESIVELLYEKQ 448

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I     IF L           E + GF +  +T L ++I   +   L RFI +LG
Sbjct: 449 K----ITSIESIFRL------KFQDFEGLEGFKEKKITKLLNAIESAKICPLYRFITALG 498

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I H+G   A+ LA  +                    +     +   G+ +A ++VEF + 
Sbjct: 499 IEHIGEVAAKKLALSF------------DKEWYQKSFEEYKNLEGFGEQMALSLVEFTRV 546

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
             N   +EA  K ++    + E +  S    K  V TGTL +  R + +  + +LG  VS
Sbjct: 547 --NQARIEAFYKLLNLENEKQEISTQSPFYEKTFVITGTLSR-PRDEFKALIERLGGKVS 603

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           + +S+KTD ++ G+  GSKLEKA++LGVK ++E QF  L
Sbjct: 604 SSVSKKTDFVLFGEEAGSKLEKARELGVKCIDEIQFNAL 642


>gi|15611625|ref|NP_223276.1| NAD-dependent DNA ligase LigA [Helicobacter pylori J99]
 gi|7674020|sp|Q9ZLM1|DNLJ_HELPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|4155109|gb|AAD06141.1| DNA LIGASE [Helicobacter pylori J99]
          Length = 656

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 218/709 (30%), Positives = 347/709 (48%), Gaps = 61/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY   +PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDEPIVSDAVYDELYQELKAYEEENPNRIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G        K  H +   SL+ ++N  +LR ++ RI + +      +  F   PK+D
Sbjct: 60  QKVGATATNEFSKNPHLMRMWSLDDVFNQNELRAWLQRILKVY-----PNASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK + A  RG+G  GE V+   + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLISATTRGNGLEGELVTNNAKHIANIPHS--IAYNGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 EDFDALNKERLNANEPLFANPRNAASGSLRQLDSNITKKRKLQFIPWGVGK-HSLHFLRF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  VDE  +QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVDELDIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA++  ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMVNRATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R    Q    P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQQKIMRPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L+    ++                + +   G  +A ++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMAHSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L + ++P        ++  SS   +K +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFELLNPKSSDTAEEKQKSSSVFSDKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LGA +++ +S KTD +I G+N GSKL  AQ+ GV ++NEE+ L  L++
Sbjct: 606 NLGAKIASSVSAKTDFLIAGENAGSKLALAQKHGVSVLNEEELLKRLKE 654


>gi|269123713|ref|YP_003306290.1| DNA ligase, NAD-dependent [Streptobacillus moniliformis DSM 12112]
 gi|268315039|gb|ACZ01413.1| DNA ligase, NAD-dependent [Streptobacillus moniliformis DSM 12112]
          Length = 675

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 213/692 (30%), Positives = 367/692 (53%), Gaps = 47/692 (6%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           I  ++  YY   + +I D EYDAL ++ + +   FP+L      N P   IGG+ +    
Sbjct: 23  IEIYNHHYYNLDESLITDREYDALLKKIELLEKEFPELKLK---NSPTEIIGGKSSDKFK 79

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
           KV H    LSL   ++++DL+ F  R+ +       N++ + LE K+DG  I++ YEKGK
Sbjct: 80  KVKHKKAMLSLANTYSMDDLKAFDQRVKKEVG----NNVEYVLELKLDGLSISLIYEKGK 135

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            + A  RGDG  GEDV+  +  I TIP++L   I   +EVRGE+ +   +F  +N E   
Sbjct: 136 LIQAVTRGDGSVGEDVTENVIQISTIPKILKDEI--DLEVRGEIVLPLKEFERINREREE 193

Query: 208 VGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266
            G   +ANPRN A+G +R+L+ +    R L+ +++ L  + +     Q E ++ ++ LGF
Sbjct: 194 NGETIFANPRNVAAGTIRQLDYSIVKDRNLDCYLYYLVDSEKYGLNTQLESIEYIQKLGF 253

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
                  + +    +        + R  L Y+ DGLV KV+E+ L   LG  A+SPRW +
Sbjct: 254 KTTGIFTKCSKIEDLEKEIEYWDNNRKKLEYETDGLVIKVNEYYLHNLLGYTAKSPRWAM 313

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++KF  +Q  T++LDI  Q+GRTG++TPVA LEPV+I G+++  A+LHN D IK L    
Sbjct: 314 AYKFKAEQKETKMLDISFQVGRTGVITPVAELEPVHISGSVVRRASLHNIDEIKRL---- 369

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                   +++GD V+V++A E+IP+VV +++ +R  + +       CP C + + ++  
Sbjct: 370 -------GLKIGDIVIVEKAAEIIPQVVKVLLEKRSGNEKEIEIIDKCPSCNNTIFKEEG 422

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
               K            C  +   ++++FVSRDA NI+G G + +D F         IR 
Sbjct: 423 QVALK-------CKNPNCVEKLKRKIEYFVSRDALNIQGFGNKLVDKFVD----LGYIRS 471

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
             DIF L+  ++    ++ N+   G  S+  L D+I+K ++I  E+  +SLGI +VG   
Sbjct: 472 IIDIFKLKNHKE----ELINLDKMGTKSIEKLLDNIDKAKDIGFEKLFYSLGIEYVGKTT 527

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           ++ +  ++ S +N                  L+ +  +G+ ++ +I  ++++  NI  + 
Sbjct: 528 SKLVVSHFGSIENIINA----------SLEELVLIEGIGEKVSLSIYNYFKDNENISLIN 577

Query: 627 ALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
            +       S  + +   ++ I NKK + TG      R + ++ + + G +  + +++  
Sbjct: 578 EIKNIGFDLSFEKEQILNNNFITNKKFLATGKFVNYSREEIKKVIEKNGGIYLSSVNKNL 637

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           D +I+G+  GSKLEKA++LGV+I+ EE+FL L
Sbjct: 638 DYLIIGEKAGSKLEKAEKLGVRIITEEEFLKL 669


>gi|171920195|ref|ZP_02931577.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|171902576|gb|EDT48865.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 1 str. ATCC
           27813]
          Length = 673

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 216/712 (30%), Positives = 368/712 (51%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + ++  L+Q++   +  YY    P + D  YD   R    + + +P    +   N 
Sbjct: 1   MDKIKAKIDELKQKLDQWNYEYYVLDDPSVPDHVYDQTMRELIELENNYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+GG ++    KV H  P LSL   +N +DL+KF                 + +EPK
Sbjct: 58  PSVKVGGFVSEKFNKVKHKRPMLSLSNAFNDDDLKKFDQDNQNASVDLKG----YVVEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           IDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRGEVY
Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGINGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251
           ++ +DF  +ND +    +  +ANPRNAA+G LR L+ +    R L+ F++ L    E+  
Sbjct: 174 MAFHDFYEMNDNLEESDK-KFANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K  YE +Q +R   F V++ + + +T + +++  +    +R  L Y IDG+V K++   +
Sbjct: 233 KTHYESIQFLRDNKFKVSDLIVKVDTINEVINQIDCYTKVRDKLSYMIDGIVIKINNLEV 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++  A
Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSMVEYA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+   
Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPYEPI 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+    +
Sbjct: 402 INCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSDAII 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F+     A  I+  AD++ LQ+ ++   T    I    + S +NL +SIN  +  SLE
Sbjct: 456 NKFYD----ANLIKNIADLYYLQKHKEFILTSDFKI---KEKSFSNLINSINNSKKCSLE 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             + + GIRHVG  +A+ +AK + +     +           ++  L  V   G+  A +
Sbjct: 509 FLLTAFGIRHVGPNLAKKIAKQFKTMTALMRA----------NFDELTNVDACGEKAASS 558

Query: 612 IVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++ ++ +  N+  V  L +           I     N+  E +NK  V TG+   I R +
Sbjct: 559 LINWFNDEHNVSLVNQLQQVGVNMEYIDDFIYDDNINIIDEYKNKTFVITGSFS-ISRDE 617

Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +  + +   A V   +S+KTD ++VG   G+KLEKA+ LGVKI+ E +F  
Sbjct: 618 IKTILEKYYHAKVKNSVSKKTDYVLVGTEAGTKLEKAKLLGVKII-ENEFWK 668


>gi|225550545|ref|ZP_03771494.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
 gi|225379699|gb|EEH02061.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
          Length = 673

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 215/712 (30%), Positives = 369/712 (51%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + +++ L+Q++   +  YY    P + D  YD   R    + +A+P    +   N 
Sbjct: 1   MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG ++    KV H  P LSL   ++  DLRKF                 + +EPK
Sbjct: 58  PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFDQDNQNASVDLKG----YVVEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           IDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRGEVY
Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251
           ++ +DF  +ND +    +  +ANPRNAA+G LR L+ +    R L+ F++ L    E+  
Sbjct: 174 MAFHDFYEMNDNLEESDK-KFANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K  YE +Q ++   F V++ + + +T   +++  +    +R+ L Y IDG+V K++   +
Sbjct: 233 KTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINNLEV 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++  A
Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIVEYA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+   
Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPYESI 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+    +
Sbjct: 402 TNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSDAII 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F+     A  I+  AD++ LQ+ ++        I    D S +NL +SIN  +  SLE
Sbjct: 456 NKFYD----ANLIKNVADLYYLQKHKEFILASDFKI---KDKSFSNLINSINNSKTRSLE 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             + + GIRHVG  +A+ LAK + +                 ++  L  V   G+  A +
Sbjct: 509 FLLTAFGIRHVGPNLAKKLAKQFKTMTTLMHA----------NFGELTNVDACGEKAALS 558

Query: 612 IVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++ ++ +  N+  V  L      ++ +   I     N+  E +NK  V TG+   I R +
Sbjct: 559 LINWFNDDHNVSLVNQLQQVGLNMEYIDDFIYDDNINIIDEYKNKTFVITGSFS-ISRDE 617

Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +  + +   A V   +S+KTD ++ G   G+KLEKA+ LGVKI+ E +F  
Sbjct: 618 IKTILEKYYHAKVKNSVSKKTDYVLAGIEAGTKLEKAKLLGVKII-ENEFWK 668


>gi|239994967|ref|ZP_04715491.1| DNA ligase, NAD-dependent [Alteromonas macleodii ATCC 27126]
          Length = 593

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 227/632 (35%), Positives = 349/632 (55%), Gaps = 45/632 (7%)

Query: 98  LEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157
           ++  ++ E L  F  R+      KD  ++ F+ EPK+DG  ++I YE G+ V AA RGDG
Sbjct: 1   MDNAFDEESLLAFEKRLKDRL--KDSATLDFSCEPKLDGLAVSILYENGELVRAATRGDG 58

Query: 158 HSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANP 216
             GE+++A +R I  +P  L   + PE +EVRGEV++ +  F  LN+     G K +ANP
Sbjct: 59  QVGENITANVRTISNVPLTLRGEHYPERVEVRGEVFMPREGFAKLNEHQKETGGKVFANP 118

Query: 217 RNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA---KGQYEMLQKMRCLGFPVNNGV 272
           RNAA+G LR+L+      R L F+ + LG              E L+++   G P+   +
Sbjct: 119 RNAAAGSLRQLDSKITAKRPLMFYAYSLGVVQPESFELPTTHSERLKQLGNWGLPLCPDI 178

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
             A    G ++YYN +   R +LPYDIDG+V+KV+   LQ  LG  AR+PRW I+ KF  
Sbjct: 179 DTAEGGKGCLAYYNHILEKRDSLPYDIDGVVFKVNRIDLQDALGFVARAPRWAIAQKFPA 238

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
           ++  T+LLD++ Q+GRTG +TPVARLEPV +GG  ++NATLHN+D I  L          
Sbjct: 239 QEEVTKLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNQDEISRL---------- 288

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
             ++VGD V+++RAG+VIP+VV ++   R       +FPS CP+C S+V +  +      
Sbjct: 289 -GVKVGDTVVIRRAGDVIPQVVSVVEANRTGSETDITFPSQCPVCDSQVEKLEDE----- 342

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
            A  RCTGGL C+AQ+ + LKHF SR AF+I+GLG + +D        A  +  PAD FT
Sbjct: 343 -AVARCTGGLICAAQRKQALKHFASRKAFDIDGLGDKLVDQLVD----ADLVHSPADFFT 397

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L      S   +  +    + S + L  S+   +  +L +F+++LGIR VG   A +LA 
Sbjct: 398 L------SLGDVVGLERMAEKSASKLLASLEASKQTTLAKFLYALGIREVGEATAANLAA 451

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
           ++ + +   +              +L+ V  VG+++A  I  F+    N   ++ALLKE 
Sbjct: 452 HFETLEAIREA----------SLEALVEVQDVGEVVATHIFNFFNESHNTDVIDALLKEG 501

Query: 633 SPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                  + +  +  +E K  V TGTL ++ R  A+  +  LGA V+  +S+ TD ++ G
Sbjct: 502 INWPAIEKPDSDNLPLEGKTCVITGTLSEMGRSDAKARLQLLGAKVAGSVSKNTDFLVAG 561

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +  GSKL KAQ+L V++ +E   +  L ++  
Sbjct: 562 EKAGSKLTKAQELDVEVWDEAALIAFLSEHEK 593


>gi|325267489|ref|ZP_08134142.1| NAD-dependent DNA ligase LigA [Kingella denitrificans ATCC 33394]
 gi|324981014|gb|EGC16673.1| NAD-dependent DNA ligase LigA [Kingella denitrificans ATCC 33394]
          Length = 804

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 247/797 (30%), Positives = 375/797 (47%), Gaps = 131/797 (16%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++   +  + +L Q ++ +   YY    P + D+EYD L R  + +   +P       P 
Sbjct: 24  TMSTPQHRIRTLVQTLNRYAHEYYTLDAPSVPDAEYDRLYRELETLEAEYPQF---RLPE 80

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI----------EDLRKFITRIYRFWQKKD 122
            P  ++GG +      V H++P LSL   ++            +   F  R+ +      
Sbjct: 81  SPTQRVGGAVLDGFETVVHAVPMLSLNNAFSPRDDETGAFGHAEFLAFDERVCKELGVA- 139

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-I 181
              + +  EPK DG  +++ Y+ G  V AA RGDG +GE+V+  I+ +  IP  L     
Sbjct: 140 --QVEYAAEPKFDGLAVSLLYQNGILVQAATRGDGTTGENVTENIKTVRNIPLKLHGEKQ 197

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240
           P ++EVRGEV + K DF ALN   +  G+KP+ANPRNAA+G LR+L+      R L+FF 
Sbjct: 198 PALLEVRGEVLMLKADFAALNQRQLEAGQKPFANPRNAAAGSLRQLDSKITAQRKLHFFA 257

Query: 241 HGLGK--TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PY 297
           +G+ +    E   +   E L  +  LGF +  G    +T    V    E  +      PY
Sbjct: 258 YGIAQLSGVERLPESHMEELALLHELGFSLPEGYFGTHTGAAAVLREYERLAEHRPRLPY 317

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KV+  + Q+QLG  +R+PRW I+HKF  ++A T +  ID+Q+GRTG +TPVAR
Sbjct: 318 EIDGMVVKVNSLAEQQQLGFVSRAPRWAIAHKFPAEEALTTVEAIDVQVGRTGAITPVAR 377

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           L PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+VV ++
Sbjct: 378 LAPVFVGGVTVTNATLHNQDEVAR-----------KDVRVGDTVVVRRAGDVIPEVVRVL 426

Query: 418 VNERH------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACS 465
           +  R                +PF  P  CP+C S V R+         A  RCTGG+ C 
Sbjct: 427 LERRPMQPVDLLGEQMEAKYEPFRLPETCPVCGSAVEREAGE------AVARCTGGMLCQ 480

Query: 466 AQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE 525
           AQ+ + L HF SR A +I GLG +Q++        A  +   ADI+ L   Q  +    +
Sbjct: 481 AQRAQGLIHFASRKAMDIAGLGDKQIEALV----AADVLHSFADIYRLDIAQLQTIKDSK 536

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR----------------- 568
           +          N+ DSI + R   L RF+F+LGIRHVG   A+                 
Sbjct: 537 S---AATKWAQNILDSIAQSRTPPLARFLFALGIRHVGESTAKQLAAAFGNLDTVRRAPE 593

Query: 569 ---------------SLAKYYLS------YQNFAQ------EINNIIAHNNDDWLS-LIR 600
                          ++A Y+          +  Q         +     +      L R
Sbjct: 594 PILACLPDIGSIVAHAIAHYFKQPAQQKMLDDLLQHVAPQAAAPSPQTRAHAAPEQWLQR 653

Query: 601 VPLV--GDIIA----------------QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
           +P +   +  A                QA+ + +Q+ R   A  ALL+E++       ++
Sbjct: 654 LPNIKLSEKRAAELWQLAGSLHALQTDQALPQEWQDWRKQPAHAALLQEITAFTEALPES 713

Query: 643 VS-----------SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
            +           S I  K  V TGTL  ++R +A   +   G  VS  +S+KTD ++ G
Sbjct: 714 STDGVSGSLHPEHSPIAGKTFVLTGTLPTLKRDQAAALIEAAGGKVSGSVSKKTDFVVAG 773

Query: 692 DNPGSKLEKAQQLGVKI 708
           +  GSKLEKAQ LGV +
Sbjct: 774 EAAGSKLEKAQALGVAV 790


>gi|169824266|ref|YP_001691877.1| NAD-dependent DNA ligase LigA [Finegoldia magna ATCC 29328]
 gi|254781333|sp|B0RZW0|DNLJ_FINM2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|167831071|dbj|BAG07987.1| NAD-dependent DNA ligase [Finegoldia magna ATCC 29328]
          Length = 662

 Score =  450 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 196/711 (27%), Positives = 358/711 (50%), Gaps = 59/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + +  +  L   ++ +   YY    P+I DSEYD L      +            PN P 
Sbjct: 2   EKQDRIKYLVDILNKYAYHYYTLDDPLIADSEYDVLYDELVNLEKE----TGIVLPNSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFT 129
           N+IGGE+     K  H     SL K  + E++R ++ +   F Q  ++N       + F 
Sbjct: 58  NRIGGEVLSGFEKHEHLNTLYSLGKAQSKEEVRNWVDKTIEFVQNYNENHVNKLPKVEFY 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +E K DG  + + Y+ G  V A  RG+G  GE +++ ++ I +IP  +      ++E++G
Sbjct: 118 VEFKFDGLTVNLTYDGGYLVMATTRGNGTIGEVITSQVKTINSIPLKIKDTR--LMEIQG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           E  +  +     N            N RNAA+G LR L+P     R L+ + + +    +
Sbjct: 176 EGVMPLSSLENYNKT----HEPKLKNARNAAAGALRNLDPAVTRERNLDAYFYNVNYLQD 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q EM++ +    F +    + A +F  +  + +E+  +R+ +    DG+V KV++
Sbjct: 232 NELETQEEMIKFLGDNYFKLYPYEKHATSFEEVSKFIDEIFELRNEIDVLTDGVVIKVND 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F  +++LG   + PRW I++KF  ++ +T + +++  +GRTG +TP A LEPV IG   +
Sbjct: 292 FKTREKLGYTNKFPRWAIAYKFEPERFTTIVKEVEWNVGRTGKVTPTALLEPVEIGNVTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATL+N D I+            + +R+   V V+R+ +VIP+++ ++  +   D +  
Sbjct: 352 KRATLNNIDDIER-----------KQVRLNSEVFVRRSNDVIPEIMGVVNPD-QEDTEEI 399

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P +CP C S + RD             C   ++C+ Q ++R+ HF SR+A NI+GL +
Sbjct: 400 EIPHYCPYCHSELFRD--------GVHIFCPNSMSCTPQLVKRMVHFASRNAMNIDGLSE 451

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L+   +      +I+   +I+ +++ Q         + GF +    NL ++I K +N+
Sbjct: 452 KTLEVLLEK----LNIKSIEEIYDVKKEQLM------QLDGFKEKKSQNLINAIEKSKNV 501

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L  FIF+LGI  +G + +  LA+ Y S+ N  +            +  LI++  +G++I
Sbjct: 502 DLANFIFALGIPEIGEKTSFELAQKYKSFDNLREA----------KFEELIQIEDIGNVI 551

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+ IVEF+ +     ++++LL +      ++ +N+  +++N   V TG+L    R +  +
Sbjct: 552 AEEIVEFFHDETISNSIDSLLSKGIKI--KNPENIEKKLDNLTFVLTGSLVNYSRKELTD 609

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ LGA VS+ +S+ TD ++ G+  GSKL KA+ LGVK+M E++    L 
Sbjct: 610 KLSNLGAKVSSSVSKNTDYVVYGEKAGSKLTKAKDLGVKLMTEDELNSFLD 660


>gi|154148661|ref|YP_001406577.1| NAD-dependent DNA ligase LigA [Campylobacter hominis ATCC BAA-381]
 gi|166215571|sp|A7I236|DNLJ_CAMHC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|153804670|gb|ABS51677.1| DNA ligase, NAD-dependent [Campylobacter hominis ATCC BAA-381]
          Length = 645

 Score =  450 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 226/702 (32%), Positives = 371/702 (52%), Gaps = 60/702 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
             E     + ++     YY    P+  D EYD L ++ +   + FPDL  S     P N+
Sbjct: 3   EAEYLKAVEMLNIWAKAYYTQDNPLATDIEYDVLYKKVETFENEFPDLKVSY---SPTNR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  ++    K+ H     S+E I++  +L  ++ R  +         + F +EPK DG 
Sbjct: 60  VGDAVSEGFEKINHKAKMWSMEDIFDDNELLAWLERGEKA-------GLEFFVEPKFDGA 112

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G  + A  RG+G +GE+V+  ++ I +IP  L ++  E IE+RGEV I+K+D
Sbjct: 113 SLNLTYENGVLISAGTRGNGETGENVTQNVKVINSIP--LQIDYKEKIEIRGEVVIAKSD 170

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256
           F ALNDE    G   +ANPRNAA+G LR+L+     +R+L FF   +G  + +  K   E
Sbjct: 171 FDALNDERANSGENLFANPRNAAAGSLRQLDSAVVKSRHLKFFPWDVG-ENSLNFKKHSE 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +++ +R LGF  ++ VR   +   +   Y ++  +R      +DG+V +++E +  + +G
Sbjct: 230 IMEFVRNLGFLKDDFVRVCASLTDLRKAYVDLHEMRERKDILMDGMVIRINELTKCENMG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + PR+M+++KF   + +T+L+DI++Q+GRTG++TPV  LEPVNI GA + NATLHN 
Sbjct: 290 YTIKFPRFMVAYKFPPVEKATKLIDINLQVGRTGVITPVGVLEPVNIDGATVRNATLHNF 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L            +  GD V + R+G+VIPK+  +    R+    P   P FCP+
Sbjct: 350 DEIARL-----------GLMKGDIVSIIRSGDVIPKITGVFGARRNGSETPIKRPEFCPV 398

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C SR++ +            RC   L C A+ +  L +F S+   NI+GLG+  ++  F+
Sbjct: 399 CGSRLLVE--------DIFIRC-QNLTCKARIVNSLIYFCSKKCMNIDGLGEAIINTLFE 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   +DI+TL+          E + GF D  ++NL  SI   R   L RFI +
Sbjct: 450 K----GKIINISDIYTLKADDL------EGLEGFKDKKISNLLASIENSRISPLYRFITA 499

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   AR +A+ +   +N+              +  ++++   G+ +A++ V F 
Sbjct: 500 LGIEHIGEVAARKIAEIFG--ENWLNA----------SFDEILKIDGFGEAMAKSFVGF- 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
               N   +E LL  +  S  + E + +     K +V TGTL  I R + +E + ++GA 
Sbjct: 547 -CEINREKIENLLSFLHLSAQKTEISQN-VFTKKTVVITGTLS-ISRDEMKEKLIKMGAN 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           V+  +S+KTD ++ G + GSKLEKA+ LGVK ++E++F  +L
Sbjct: 604 VTNSVSKKTDFVLFGKDAGSKLEKAKMLGVKAISEDEFKEML 645


>gi|13357678|ref|NP_077952.1| DNA ligase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762219|ref|YP_001752204.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|183508850|ref|ZP_02958298.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|81549679|sp|Q9PR23|DNLJ_UREPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781447|sp|B1AIB0|DNLJ_UREP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|11272940|pir||F82930 DNA ligase UU121 [imported] - Ureaplasma urealyticum
 gi|6899079|gb|AAF30527.1|AE002113_1 DNA ligase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827796|gb|ACA33058.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|182675825|gb|EDT87730.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 14 str. ATCC
           33697]
          Length = 673

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 216/712 (30%), Positives = 367/712 (51%), Gaps = 53/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ + ++  L+Q++   +  YY    P + D  YD   R    + + +P    +   N 
Sbjct: 1   MDKIKAKIDELKQKLDQWNYEYYVLDDPSVPDHVYDQTMRELIELENNYPQFKTN---NS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+GG ++    KV H  P LSL   +N +DL+KF                 + +EPK
Sbjct: 58  PSVKVGGFVSEKFNKVKHKRPMLSLSNAFNDDDLKKFDQDNQNASVDLKG----YVVEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192
           IDG  I+I Y+  K   A  RGDG +GEDV++ I  I  IP  +     +  IEVRGEVY
Sbjct: 114 IDGLSISIIYKNAKLHQAITRGDGINGEDVTSNILTIKDIPHYIDQKYKDYEIEVRGEVY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251
           ++ +DF  +ND +    +  +ANPRNAA+G LR L+ +    R L+ F++ L    E+  
Sbjct: 174 MAFHDFYEMNDNLEESDK-KFANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQELGI 232

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K  YE +Q +R   F V++ + + +T + +++  +    +R  L Y IDG+V K++   +
Sbjct: 233 KTHYESIQFLRDNKFKVSDLIVKVDTINEVINQIDCYTKVRDKLSYMIDGIVIKINNLEV 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             ++G  ++ P+W I++KF     S++LL+I   +GRTG ++ VA+++P+ + G+++  A
Sbjct: 293 YDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSMVEYA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN D+IK            +DIR+ D + + +AG+VIP V  + +++R  ++ P+   
Sbjct: 353 TLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPYEPI 401

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP CQS +VR+ +          RC     C    +E++ +FVSR+  NIEG+    +
Sbjct: 402 INCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSDAII 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F+     A  I+  AD++ LQ+ ++   T    I    + S +NL +SIN  +  SLE
Sbjct: 456 NKFYD----ANLIKNIADLYYLQKHKEFILTSDFKI---KEKSFSNLINSINNSKKCSLE 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             + + GIRHVG  +A+ +AK + +                 ++  L  V   G+  A +
Sbjct: 509 FLLTAFGIRHVGPNLAKKIAKQFKTMTALMHA----------NFDELTNVDACGEKAALS 558

Query: 612 IVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           ++ ++ +  N+  V  L +           I     N+  E +NK  V TG+   I R +
Sbjct: 559 LINWFNDEHNVSLVNQLQQVGVNMEYIDDFIYDDNINIIDEYKNKTFVITGSFS-ISRDE 617

Query: 666 AQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +  + +   A V   +S+KTD ++VG   G+KLEKA+ LGVKI+ E +F  
Sbjct: 618 IKTILEKYYHAKVKNSVSKKTDYVLVGTEAGTKLEKAKLLGVKII-ENEFWK 668


>gi|15645240|ref|NP_207410.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 26695]
 gi|3182983|sp|O25336|DNLJ_HELPY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|2313737|gb|AAD07680.1| DNA ligase (lig) [Helicobacter pylori 26695]
          Length = 656

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 225/709 (31%), Positives = 350/709 (49%), Gaps = 61/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE       ++     YY   +PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIAYLNTLSHHYYNLDEPIVSDAIYDELYQELKAYEEKNPNGIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI      K   S  F   PK+D
Sbjct: 60  QKVGATTTNSFNKNPHLMRMWSLDDVFNQSELQAWLQRI-----LKAYPSASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHA--IAYNGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 KDFDALNQERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+I  ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMINRATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLSDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L+    ++                + +   G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L + ++P    +   ++  SS   NK +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFELLNPKNSDMAEEKQKSSSVFNNKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LGA +S+ +S KTD +I G+NPGSKL  AQ+ GV ++NEE+ L  L++
Sbjct: 606 NLGAKISSSVSAKTDFLIAGENPGSKLALAQKHGVSVLNEEELLKRLKE 654


>gi|26553637|ref|NP_757571.1| NAD-dependent DNA ligase [Mycoplasma penetrans HF-2]
 gi|81748016|sp|Q8EWL9|DNLJ_MYCPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|26453643|dbj|BAC43975.1| NAD-dependent DNA ligase [Mycoplasma penetrans HF-2]
          Length = 701

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 210/722 (29%), Positives = 367/722 (50%), Gaps = 66/722 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + ++    + +L + ++ ++  YY    P + D EYD   +    +   +P+    + PN
Sbjct: 18  NNKEILNRIQNLRKNLNQYNYEYYGLENPSVSDYEYDMCLKELIQLETQYPEF---DSPN 74

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  K+GG ++    KV H IP +SL   ++ EDL KF   I +     D     + +EP
Sbjct: 75  SPSKKVGGYISEKFNKVKHEIPMMSLSNAFDEEDLLKFDNDIKKAIGSSD---FSYVVEP 131

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  I+++Y+ G  + A  RGDG  GEDV+  I+ I ++P  L++   + +E+RGEV+
Sbjct: 132 KIDGLSISVKYKDGNLIQAVTRGDGEIGEDVTQNIKTIKSLP--LNIEYDKDLEIRGEVF 189

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           ++K DF  +N +     +  +AN RNAASG LR L+      R L+   + + K +E+  
Sbjct: 190 LTKKDFEKINSDPNLTKK--FANARNAASGSLRNLDSNITAKRNLSALFYYVPKATELKI 247

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             QY++L  +     P++  +R  N   G++   +E+   R    YDIDG+V KV++F+ 
Sbjct: 248 AKQYDVLSWLDKQLIPISREIRHCNNIQGVIERISELTDTRDQFKYDIDGIVIKVNDFNH 307

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            +++G  ++ P+W I++KF      T+L  ID+ +GRTG +  +A L+ + + G+ +  A
Sbjct: 308 YEEIGYTSKFPKWAIAYKFPAVVKQTKLNSIDVTVGRTGRINYIANLDEILLEGSQVKKA 367

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN DYIK             +I + D V + +AGE+IPK++  I  +R      F  P
Sbjct: 368 TLHNYDYIK-----------DHEIMLNDIVEIYKAGEIIPKIIRSIKEKRDGSQVVFPEP 416

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S++V+                    C  +Q++++++F SRDA NIEGL    +
Sbjct: 417 TNCPSCDSKLVKKEQE-------VDLYCLNENCVEKQIQQIEYFSSRDAMNIEGLSISII 469

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG--------------FGDVSVTN 537
              F+++     I    D++ L  +++      +                  F D S TN
Sbjct: 470 SQLFRNK----IINDAIDLYELAHKKEILIATKQKFYRKNDDGTKTEFERSLFKDKSFTN 525

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           + ++I K ++ S+E+F+  LGI++VG   A++L+K + S +  A                
Sbjct: 526 IIEAIEKSKSNSMEKFLTGLGIKYVGLRAAKALSKRFKSIEELAMATR----------EE 575

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKK 651
           + +VP  G+ +++++V ++ +P+N   +    K        +E      KN   +  NK 
Sbjct: 576 IEQVPDTGEKMSESLVNWFSDPKNQDLLWRAKKVGINFNYINEFNDVVVKNEHQKYMNKT 635

Query: 652 LVFTGTLQKIQRHKAQEYVTQ-LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709
            V TG+  K  R++ + Y+     A VS  +S+KTD ++VG+N G SKL+KA  L ++I+
Sbjct: 636 FVITGSFNK-SRNEIKNYIESVFNAKVSDSVSKKTDYLVVGENAGDSKLKKANDLKIEII 694

Query: 710 NE 711
            E
Sbjct: 695 TE 696


>gi|148259769|ref|YP_001233896.1| DNA ligase, NAD-dependent [Acidiphilium cryptum JF-5]
 gi|166215383|sp|A5FWJ5|DNLJ_ACICJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146401450|gb|ABQ29977.1| DNA ligase, NAD-dependent [Acidiphilium cryptum JF-5]
          Length = 682

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 265/705 (37%), Positives = 403/705 (57%), Gaps = 40/705 (5%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
               +  L+ L + ++  D  YY+   PI+ D+ YDAL+R  +++  A PDLA + D   
Sbjct: 11  PADPKARLAELVERLAAADAAYYRDDAPIMDDAAYDALRREAESLRAAHPDLAAALD--- 67

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              ++G   + +  KV H +P LSL+ ++   D  +F   I RF        + F  EPK
Sbjct: 68  ---QVGAAPSGAFGKVRHRLPMLSLDNVFEPADFVEFCASIRRFLGL-GAAPLAFVAEPK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I++ YE  +FV  A RGDG  GEDV+  +R +  +P  L  + P+ IE+RGEVY+
Sbjct: 124 IDGLSISLTYENRRFVRGATRGDGTEGEDVTENLRTLRELPATLPDDAPDFIEIRGEVYM 183

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
           +K DF+ LN        + +ANPRNAA+G LR+L+P    +R L+ F +  G  S+   +
Sbjct: 184 TKTDFITLNQGQ----ARQFANPRNAAAGSLRQLDPAVTASRRLSLFAYARGAASQAVGE 239

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             ++ L  +R  GFPVN    + +   G   +   +   R+ L YDIDG+VYK+D+ +LQ
Sbjct: 240 THWDYLAILRRWGFPVNPLAERVSE-AGAEPFQRSIGERRAGLDYDIDGVVYKIDDLALQ 298

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG   R+PRW ++ KF  ++A T LL IDIQ+GRTG LTP ARL+PVN+GG L+++AT
Sbjct: 299 ERLGFAGRAPRWAVAWKFPAERALTTLLGIDIQVGRTGALTPRARLDPVNVGGVLVSHAT 358

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHNED I             +D+R+GD V ++RAG+VIP+++  +   R  D+ PF FP 
Sbjct: 359 LHNEDEIAR-----------KDVRIGDTVELQRAGDVIPQILRALPERRPADSVPFVFPD 407

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C +  +R             RCTGGL+C AQ +ERL HF SR AF+IEG+G++ + 
Sbjct: 408 HCPVCGALAIRPAGE------VVRRCTGGLSCPAQVVERLIHFCSRLAFDIEGMGEKTVQ 461

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F         +  PADIFTL+ R+      I  + G+G+VS   L  +I+ RR ISL R
Sbjct: 462 EFH----GLGWLESPADIFTLRDREA----AIAALEGWGEVSARKLIAAIDARRRISLAR 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI++LGIR +G + A+ LA++Y SY  + +++       +D  L L  +  +G  IA+ +
Sbjct: 514 FIYALGIRRIGEQNAKLLARHYSSYAVWRRQMEEAGVIGSDARLELGSISGIGPSIAEEL 573

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
             F+  P N   ++ L+  ++          +     K +VFTGTL+ + R +A+     
Sbjct: 574 AGFFAEPHNRDLLDRLVPMLTIEDEVAAAGGALAG--KTIVFTGTLESLTRPEAKARAEA 631

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           LGA V+  +S+KTD ++VG + GSK  KA  LGV +++E +F  L
Sbjct: 632 LGARVTESVSKKTDFVVVGADAGSKAAKAASLGVTVLSEAEFRSL 676


>gi|302380539|ref|ZP_07269004.1| DNA ligase (NAD+) [Finegoldia magna ACS-171-V-Col3]
 gi|302311482|gb|EFK93498.1| DNA ligase (NAD+) [Finegoldia magna ACS-171-V-Col3]
          Length = 662

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 196/711 (27%), Positives = 359/711 (50%), Gaps = 59/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + +  +  L   ++ +   YY    P+I DSEYD L      +            PN P 
Sbjct: 2   EKQDRMKYLVDILNKYAYHYYTLDDPLIADSEYDVLYDELVNLEKE----TGIVLPNSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFT 129
           N+IGGE+     K  H     SL K  + E++R ++ +   F +  ++N       + F 
Sbjct: 58  NRIGGEVLSGFEKHEHLNTLYSLGKAQSKEEVRNWVDKTIEFVENYNENHVNKLPKVEFY 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +E K DG  + + Y+ G  V A  RG+G  GE +++ ++ I +IP  +      ++E++G
Sbjct: 118 VEFKFDGLTVNLTYDGGYLVMATTRGNGTIGEVITSQVKTINSIPLKIKDKR--LMEIQG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           E  +  +     N            N RNAA+G LR L+P+    R L+ + + +    +
Sbjct: 176 EGVMPLSSLEKYNKT----HEPKLKNARNAAAGALRNLDPSVTRERNLDAYFYNVNYLQD 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q EM++ +    F +    + A +F  I  + +E+  +R+ +    DG+V KV++
Sbjct: 232 NELETQEEMMKFLGDNYFKLYPYEKHATSFEEISKFIDEIFELRNEIDVLTDGVVIKVND 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F  +++LG   + PRW I++KF  ++ +T + +++  +GRTG +TP A LEPV IG   +
Sbjct: 292 FKTREKLGYTNKFPRWAIAYKFEPERFTTIVKEVEWNVGRTGKVTPTALLEPVEIGNVTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATL+N D I+            + +R+   V V+R+ +VIP+++ ++  +   D +  
Sbjct: 352 KRATLNNIDDIER-----------KQVRLNSEVFVRRSNDVIPEIMGVVNPD-QEDTEEI 399

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P +CP C S + RD             C   ++C+ Q ++R+ HF SR+A NI+GL +
Sbjct: 400 EIPHYCPYCHSELFRD--------GVHIFCPNSMSCTPQLVKRMVHFASRNAMNIDGLSE 451

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L+   +      +I+   +I+ +++ Q         + GF +    NL ++I K +N+
Sbjct: 452 KTLEVLLEK----LNIKSIEEIYDVKKEQLM------QLDGFKEKKSQNLINAIEKSKNV 501

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L  FIF+LGI  +G + +  LA+ Y S+ N  +            +  LI++  +G++I
Sbjct: 502 DLANFIFALGIPEIGEKTSFELAQKYKSFDNLREA----------KFEELIQIEDIGNVI 551

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+ IVEF+ +     ++++LL +      ++ +N+  +++N   V TG+L    R +  +
Sbjct: 552 AEEIVEFFHDETISNSIDSLLSKGIKI--KNPENIEKKLDNLTFVLTGSLVNYSRKELTD 609

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ LGA VS+ +S+ TD ++ G+  GSKL KA+ LGVK+M E++    L 
Sbjct: 610 KLSNLGAKVSSSVSKNTDYVVYGEKAGSKLTKAKDLGVKLMTEDELNSFLD 660


>gi|296329302|ref|ZP_06871803.1| NAD-dependent DNA ligase LigA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296153658|gb|EFG94475.1| NAD-dependent DNA ligase LigA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 696

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 220/711 (30%), Positives = 363/711 (51%), Gaps = 50/711 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L ++++ + D YY  +K +I D E+D L +  +++   +P        + P   +
Sbjct: 29  EKIVKLREDLNKYRDSYYNDNKSLISDYEFDILLKELESLEEKYPQYKEI---SSPTTSV 85

Query: 79  GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G  +      KV H    LSL   +NI ++ +FI RI +   K+    + + LE K+DG 
Sbjct: 86  GASLKENKFKKVEHLHQMLSLANSYNIGEIVEFIERIKKKIPKE--QELKYCLEVKLDGL 143

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I++ Y +GK V A  RGDG  GEDV+  I  I +I + L   I   +E+RGEV +    
Sbjct: 144 SISLTYRQGKLVRAVTRGDGFIGEDVTENILEIASIVKTLPQAI--DMEIRGEVVLPLAS 201

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN+E +  G + +ANPRNAASG LR+L+      R L+ + + L +  ++  K   E
Sbjct: 202 FEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKDRGLDAYFYFLVEADKLGLKSHSE 261

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            ++ +  +G           T   I    +  +  R  LPY+ DGLV KVDE +L  ++G
Sbjct: 262 SIKFLESMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLVIKVDEINLWDEIG 321

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +++PRW I++KF   Q ST L D+  Q+GRTG LTPVA LE V + G+ +  A+LHN 
Sbjct: 322 YTSKTPRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNI 381

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             I+            +DIR+GDRV +++A E+IP+VV  I  ER  + +    P  CP+
Sbjct: 382 SEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKIIEEPVCCPV 430

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C  ++ R+      K            C A+    +++FVSRDA NI GLG + ++ F  
Sbjct: 431 CNHKLEREEGLVDIK-------CINEECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFID 483

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+   DIF L+  ++     +ENI   G  S+ NL +SI + +N   ++ I++
Sbjct: 484 ----LGYIKTVVDIFDLKNHRE----ALENIDKMGKRSIENLLNSIEESKNRDYDKVIYA 535

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G   ++ LAK   +                  +  L  +  +G+I A  I+ F+
Sbjct: 536 LGIPFIGKVASKILAKASKNIDKLM----------TMTFEELTSIEGIGEIAANEIIAFF 585

Query: 617 QNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
              +N   ++ L ++      +  +    NV+     K  +FTGTL+   R + +E + +
Sbjct: 586 TKEKNQKIIQGLKEKGLKFEIKESEASVQNVNPNFVGKNFLFTGTLKHFTREQIKEEIEK 645

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           LG    + +S+  D +IVG+  GSKL+K Q++  +KI+ EE+F+ L  +++
Sbjct: 646 LGGKNLSSVSKNLDYLIVGEKAGSKLKKVQEIPTIKILTEEEFIELKDKFD 696


>gi|57241999|ref|ZP_00369939.1| DNA ligase, NAD-dependent [Campylobacter upsaliensis RM3195]
 gi|57017191|gb|EAL53972.1| DNA ligase, NAD-dependent [Campylobacter upsaliensis RM3195]
          Length = 644

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 221/699 (31%), Positives = 350/699 (50%), Gaps = 60/699 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E        +     YY+  +P+  D EYD L R         P L     P+ P  KI 
Sbjct: 3   EYLKKVALANLWMRAYYEEDEPLASDEEYDRLIREIKVFEKENPSLI---SPDSPTQKIA 59

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
             +     K  H     S+E +++ E+LR +  R              F +EPK DG  +
Sbjct: 60  PTIQSKFKKSRHLSKMWSMEDVFDEEELRAWAKRAR--------CEDGFFIEPKFDGASL 111

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + Y+KG+ V AA RGDG  GEDV+  ++ I  IP++  +N    IE+RGEV I K DF 
Sbjct: 112 NLLYQKGRLVSAATRGDGEIGEDVTLNVKEIANIPQI--INYEGEIEIRGEVVILKEDFE 169

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN++        +ANPRNAASG LR+L+      R L F+  G+GK   +      E++
Sbjct: 170 RLNEKRAKENLSLFANPRNAASGSLRQLDTQITKERNLKFYPWGVGK-HTLSFAKHSELM 228

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             +R LGF  +  VR       ++++Y E+ S+R   P  +DG+V +VD+ +L K+LG  
Sbjct: 229 CFVRELGFLKDEFVRVCKNLDEVLTHYKELLSLRDLKPMMMDGMVVRVDDIALCKELGYT 288

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            + P++M + KF   + STRL+ + +Q+GR+G++TPVA LEPVN+ G ++ +A+LHN D 
Sbjct: 289 IKYPKFMAAFKFPALEKSTRLVGVSLQVGRSGVITPVAVLEPVNLDGVVVKSASLHNFDE 348

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I+ L           ++R+ D V V R+G+VIPK+  +  + R  +A     P  CP+C+
Sbjct: 349 IERL-----------NLRLNDFVSVIRSGDVIPKITKVFKDRRGENALKIERPKLCPVCE 397

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++ +          A      L C A+ +  + +FVS+   NI+GLG+  ++  ++ +
Sbjct: 398 SELLDEG---------ALIKCQNLDCKARLVNSIIYFVSKKCLNIDGLGESIVELLYEKQ 448

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I     IF L           E + GF +  +T L ++I   +   L RFI +LG
Sbjct: 449 K----ITSIESIFRL------KFQDFEGLEGFKEKKITKLLNAIESAKICPLYRFITALG 498

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I H+G   A+ LA  +                    +     +   G+ +A ++VEF + 
Sbjct: 499 IEHIGEVAAKKLALSF------------DKEWYQKSFEEYKNLEGFGEQMALSLVEFTRV 546

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
             N   +EA  K ++    + E +  S    K  V TGTL +  R + +  + +LG  VS
Sbjct: 547 --NQARIEAFYKLLNLENEKQEISTQSPFYEKTFVITGTLSR-PRDEFKALIERLGGKVS 603

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           + +S+KTD ++ G+  GSKLEKA++LGVK ++E QF  L
Sbjct: 604 SSVSKKTDFVLFGEEAGSKLEKARELGVKCIDEIQFNTL 642


>gi|298736308|ref|YP_003728834.1| NAD-dependent DNA ligase LigA [Helicobacter pylori B8]
 gi|298355498|emb|CBI66370.1| NAD-dependent DNA ligase LigA [Helicobacter pylori B8]
          Length = 656

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 220/709 (31%), Positives = 349/709 (49%), Gaps = 61/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE       ++     YY    PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIAYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K +H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGAITTNSFNKNSHLMRMWSLDDVFNQSELQAWLQRILKAY-----PSASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE V+   + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVTNNAKHIANIPHF--IAYDGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 KDFDALNQERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  VDE  +QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVDELDIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEP+ I GA+I  ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMINRATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIVNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LA+Y L+    ++                + +   G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLARYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L + ++P    +   ++  SS   NK +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFELLNPRNSDMAEEKQKSSSVFNNKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LGA +S+ +S KTD +I G+NPGSKL  A++ GV ++NEE+ L  L++
Sbjct: 606 NLGAKISSSVSAKTDFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKE 654


>gi|317014035|gb|ADU81471.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Gambia94/24]
          Length = 656

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 216/709 (30%), Positives = 346/709 (48%), Gaps = 61/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY   +PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDEPIVSDAVYDELYQELKAYEEENPNRIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G        K  H +   SL+ ++N  +L+ ++ RI + +      +  F   PK+D
Sbjct: 60  QKVGATATNEFSKNPHLMRMWSLDDVFNQNELQAWLQRILKAY-----PNASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK + A  RG+G  GE V+   + I  IP    +     IE+RGEV I+K
Sbjct: 115 GVSLNLLYQHGKLISATTRGNGLEGELVTNNAKHIANIPHS--IAYSGEIEIRGEVIIAK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 EDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  VDE  +QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVDELDIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA++T ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMVTKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + D+V+V R+G+VIPK++  +   R    Q    P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDKVVVIRSGDVIPKIIKPLETYRDGSQQKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIVNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L+    ++                + +   G  +A ++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLKKSEA-------------EFLEMEGFGVEMAHSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P        ++  SS   NK +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKSSDTAEEKQKSSSVFSNKTIVLTGTLSK-PRQEYAQILE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LGA +++ +S KTD +I G+N GSKL  A++ GV ++NEE+ L  L++
Sbjct: 606 NLGAKIASSVSAKTDFLIAGENAGSKLALAKKHGVSVLNEEELLKRLKE 654


>gi|297588239|ref|ZP_06946882.1| DNA ligase (NAD(+)) [Finegoldia magna ATCC 53516]
 gi|297573612|gb|EFH92333.1| DNA ligase (NAD(+)) [Finegoldia magna ATCC 53516]
          Length = 662

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 197/711 (27%), Positives = 355/711 (49%), Gaps = 59/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + +  +  L   ++ +   YY    P+I DSEYD L      +            PN P 
Sbjct: 2   EKKDRIKYLVDILNKYAYHYYTLDDPLIEDSEYDVLYDELVNLEKE----TGIVLPNSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFT 129
           N+IGGE+     K  H     SL K  + E++R ++ +   F +  + N       + F 
Sbjct: 58  NRIGGEVLSGFEKHVHLNTLYSLGKAQSKEEVRNWVNKTIEFVENYNKNHVNKLPQVEFY 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +E K DG  + + Y+ G  V A  RG+G  GE +++ +R I +IP  +      ++E++G
Sbjct: 118 VEFKFDGLTVNLTYDGGYLVMATTRGNGTIGEVITSQVRTINSIPLKIKDTR--LMEIQG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           E  +  +     N            N RNAA+G LR L+P     R L+ + + +    E
Sbjct: 176 EGVMPLSSLEKYN----QTHEPKLKNARNAAAGALRNLDPAVTRERNLDAYFYNVNYLEE 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q +M++ +    F +    + A +F  I  + +E+  +R+ +    DG+V KV++
Sbjct: 232 NVLETQEQMMKFLGDNYFKLYPYEKHATSFEEISEFIDEIFELRNEIDVLTDGVVIKVND 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F  +++LG   + PRW I++KF  ++ +T + +++  +GRTG +TP A LEPV IG   +
Sbjct: 292 FKTREKLGYTNKFPRWAIAYKFEPERFTTIVKEVEWNVGRTGKVTPTALLEPVEIGNVTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATL+N D I+            + +R+   V V+R+ +VIP+++ ++  +   D +  
Sbjct: 352 KRATLNNIDDIER-----------KQVRLNSEVFVRRSNDVIPEIMGVVNPD-QEDTEEI 399

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P +CP C S + RD             C   ++C+ Q ++R+ HF SR+A NI+GL +
Sbjct: 400 EIPHYCPYCHSELFRD--------GVHIFCPNSMSCTPQLVKRMVHFASRNAMNIDGLSE 451

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L    +      +I    +I+ +++ Q         + GF +    NL ++I K +N+
Sbjct: 452 KTLKVLLEK----LNITSIEEIYDVKKEQLM------QLEGFKEKKSQNLINAIEKSKNV 501

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L  FIF+LGI  +G + +  LA+ Y S+ N  +            +  LI++  +G++I
Sbjct: 502 DLANFIFALGIPEIGEKTSFELAQKYKSFDNLREA----------KFDELIQIEDIGNVI 551

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+ IVEF+ +     ++++LL +      ++ +N+  +++N   V TG+L    R +  +
Sbjct: 552 AEEIVEFFHDETISHSIDSLLSKGIKI--KNPENIEKKLDNLTFVLTGSLVNYSRKELTD 609

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ LGA VS+ +S+ TD ++ G+  GSKL KA+ LGVK+M E++    L 
Sbjct: 610 KLSNLGAKVSSSVSKNTDYVVYGEKAGSKLTKAKDLGVKLMTEDELNSFLD 660


>gi|303234054|ref|ZP_07320703.1| DNA ligase (NAD+) [Finegoldia magna BVS033A4]
 gi|302494979|gb|EFL54736.1| DNA ligase (NAD+) [Finegoldia magna BVS033A4]
          Length = 662

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 196/711 (27%), Positives = 358/711 (50%), Gaps = 59/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + +  +  L   ++ +   YY    P+I DSEYD L      +            PN P 
Sbjct: 2   EKQDRIKYLVDILNKYAYHYYTLDDPLIADSEYDVLYDELVNLEKE----TGIVLPNSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFT 129
           N+IGGE+     K  H     SL K  + E++R ++ +   F +  ++N       + F 
Sbjct: 58  NRIGGEVLSGFEKHEHLNTLYSLGKAQSKEEVRNWVDKTIEFVENYNENHVNKLPKVEFY 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +E K DG  + + Y+ G  V A  RG+G  GE +++ ++ I +IP  +      ++E++G
Sbjct: 118 VEFKFDGLTVDLTYDGGYLVMATTRGNGTIGEVITSQVKTINSIPLKIKDTR--LMEIQG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           E  +  +     N            N RNAA+G LR L+P     R L+ + + +    +
Sbjct: 176 EGVMPLSSLENYNKT----HEPKLKNARNAAAGALRNLDPAVTRERNLDAYFYNVNYLQD 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q EM++ +    F +    + A +F  I  + +E+  +R+ +    DG+V KV++
Sbjct: 232 NELETQEEMMKFLGDNYFKLYPYEKHATSFEEISKFIDEIFELRNEIDVLTDGVVIKVND 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F  +++LG   + PRW I++KF  ++ +T + +++  +GRTG +TP A LEPV IG   +
Sbjct: 292 FKTREKLGYTNKFPRWAIAYKFEPERFTTIVKEVEWNVGRTGKVTPTALLEPVEIGNVTV 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATL+N D I+            + +R+   V V+R+ +VIP+++ ++  +   D +  
Sbjct: 352 KRATLNNIDDIER-----------KQVRLNSEVFVRRSNDVIPEIMGVVNPD-QEDTEEI 399

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P +CP C S + RD             C   ++C+ Q ++R+ HF SR+A NI+GL +
Sbjct: 400 GIPHYCPYCHSELFRD--------GVHIFCPNSMSCTPQLVKRMVHFASRNAMNIDGLSE 451

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + L+   +      +I+   +I+ +++ Q         + GF +    NL ++I K +N+
Sbjct: 452 KTLEVLLEK----LNIKSIEEIYDVKKEQLM------QLDGFKEKKSQNLINAIEKSKNV 501

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L  FIF+LGI  +G + +  LA+ Y S+ N  +            +  LI++  +G++I
Sbjct: 502 DLANFIFALGIPEIGEKTSFELAQKYKSFDNLREA----------KFEELIQIEDIGNVI 551

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+ IVEF+ +     ++++LL +      ++ +N+  +++N   V TG+L    R +  +
Sbjct: 552 AEEIVEFFHDETISNSIDSLLSKGIKI--KNPENIEKKLDNLTFVLTGSLVNYSRKELTD 609

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++ LGA VS+ +S+ TD ++ G+  GSKL KA+ LGVK+M E++    L 
Sbjct: 610 KLSNLGAKVSSSVSKNTDYVVYGEKAGSKLTKAKDLGVKLMTEDELNSFLD 660


>gi|317177554|dbj|BAJ55343.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F16]
          Length = 656

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 225/711 (31%), Positives = 354/711 (49%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY    PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K +H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGAITPNSFNKNSHLMRMWSLDDVFNQNELQAWLQRILKAY-----PSTSFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHA--ITYNGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 KDFDALNQERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHALIREREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEP+ I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPIEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L+    ++                + +   G  +A ++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMAHSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    + + ++  SS   NK +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQKSSSVFNNKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA VS+ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++++
Sbjct: 606 NLGAKVSSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656


>gi|108563021|ref|YP_627337.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPAG1]
 gi|123246990|sp|Q1CTQ9|DNLJ_HELPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|107836794|gb|ABF84663.1| DNA ligase [Helicobacter pylori HPAG1]
          Length = 656

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 221/709 (31%), Positives = 347/709 (48%), Gaps = 61/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE       ++     YY    PI+ D+ YD L +   A     P   ++   N P 
Sbjct: 3   KSQKEYLERIAYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPSHIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G        K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGATATNPFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAY-----PSASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y  GK + A  RG+G  GE VSA  + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYHHGKLISATTRGNGLEGELVSANAKHIANIPHA--IAYKGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+I  ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAMINRATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSYELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIVNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L+    ++                + +   G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L + ++P    +   ++  SS   NK +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFELLNPRNSDMAEEKQKSSSVFNNKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LGA +S+ +S KT+ +IVG+N GSKL  AQ+ GV ++NEE+ L  L++
Sbjct: 606 NLGAKISSSVSAKTNFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKE 654


>gi|218260659|ref|ZP_03475861.1| hypothetical protein PRABACTJOHN_01525 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224427|gb|EEC97077.1| hypothetical protein PRABACTJOHN_01525 [Parabacteroides johnsonii
           DSM 18315]
          Length = 606

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 209/647 (32%), Positives = 323/647 (49%), Gaps = 47/647 (7%)

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +++    +V H  P LSL   ++ ++++ F  RI R      +       E K DGT 
Sbjct: 2   GSDLSKEFEQVVHKYPMLSLGNTYSEDEVKDFYERIARDL----NEPFEIVAELKYDGTS 57

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197
           I++ YE G+ V A  RGDG  G+DV+A ++ I ++P  L  +  P   E+RGE+ +   +
Sbjct: 58  ISLTYEDGRLVRAVTRGDGTRGDDVTANVKTIRSVPLKLMGDGYPAAFEIRGEILLPWAE 117

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  LN E        +ANPRNAASG L++ NP  +               E+ A+  ++ 
Sbjct: 118 FDRLNKEREQQEEPLFANPRNAASGTLKQQNPAIVAARKLDAYFYYLLGEELPAETHFDN 177

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+  R  GF V N +R  N+   I  Y     + R  LP   DG+V KV+    Q  LG 
Sbjct: 178 LEAARSWGFKVPNVIRVCNSLEDIYDYIAYWDAERKNLPVATDGIVLKVNSLRQQLNLGF 237

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            A+SPRW I++KF  ++A TRL  +  Q+GRTG +TPVA LEPV + G  +  A+LHN D
Sbjct: 238 TAKSPRWAIAYKFQAERAVTRLNSVSFQVGRTGAVTPVANLEPVLLAGTTVKRASLHNAD 297

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFCPI 436
            I+GL           D+ +GD+V V++ GE+IPK+V + V  R         F   CP 
Sbjct: 298 IIEGL-----------DLHLGDKVFVEKGGEIIPKIVGVDVEARGLLVGDKVRFIRSCPE 346

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + ++R          AAH C     C  Q   +++HFV+R A NI    +       +
Sbjct: 347 CGTPLMRPEGE------AAHYCPNEAGCPPQIKGKIEHFVTRRAMNINMGPET-----VE 395

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  I+  AD++TL+       + +  +  + D S  NL  S+ + + +  ER ++ 
Sbjct: 396 DLYEAGYIKDTADLYTLE------ISDLLRLERWADKSARNLMASLEESKQVPFERVLYG 449

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIR VG  +A+ L   + S     Q            +  LI V  +G+ IA++I+ ++
Sbjct: 450 LGIRFVGETVAKRLVAAFHSMDQLEQA----------SFEDLIAVDEIGERIARSIIAYF 499

Query: 617 QNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            + RN   V  L +         E   N S +++   +V +GT  +  R + +  + Q G
Sbjct: 500 ADERNRNLVNRLKEYGLRMSVAEEVLANRSEKLKGLSIVISGTFARHSRDEYKAMIEQHG 559

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
              S  +S KTD I+ GDN G +KLEKA +LGVKI+NE++FL ++ +
Sbjct: 560 GKNSGSVSGKTDYILAGDNMGPAKLEKAAKLGVKIINEDEFLNMIAE 606


>gi|157414868|ref|YP_001482124.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni
           81116]
 gi|190359240|sp|A8FL10|DNLJ_CAMJ8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157385832|gb|ABV52147.1| DNA ligase [Campylobacter jejuni subsp. jejuni 81116]
 gi|315931784|gb|EFV10739.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 327]
          Length = 647

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 207/704 (29%), Positives = 346/704 (49%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYDAL R   A              + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRAFEEQN---KDEISKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  + R +  R              F +EPK DG 
Sbjct: 60  IAPTIQSEFKKIAHLKRMWSMEDVFDESEFRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP   ++   E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  GLG  + +      E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGLG-ENTLNFTKHSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ VR       ++  Y+E+ ++R   P  +DG+V ++D+ +L ++LG
Sbjct: 229 VMQFIRELGFLKDDFVRLCVNLDEVLKAYDELLALREKKPMMMDGMVVRIDDLALCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +                 + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +           I TL+          E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HK----------KITTLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                +   + +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KEWHKQSFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +   N   ++   K ++  I + E      I  K  V TGTL +  R + +  + +LG  
Sbjct: 547 RV--NRTRIDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSR-SRDEFKALIEKLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD ++ G+  GSKL KA++L +K ++E  F  L+++
Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLIKAKELEIKCIDESAFNELVKE 647


>gi|307747505|gb|ADN90775.1| DNA ligase [Campylobacter jejuni subsp. jejuni M1]
          Length = 647

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 207/704 (29%), Positives = 348/704 (49%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYDAL R   A              + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRAFEEQN---KDEISKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  + R +  R              F +EPK DG 
Sbjct: 60  IAPTIQSEFKKIAHLKRMWSMEDVFDESEFRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP   ++   E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  GLG  + +      E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGLG-ENTLNFTKHSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ VR       ++  Y+E+ ++R   P  +DG+V ++D+ +L ++LG
Sbjct: 229 VMQFIRELGFLKDDFVRLCVNLDEVLKAYDELLALREKKPMMMDGMVVRIDDLALCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +  + R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKDRREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +                 + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +           I TL+       +  E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HK----------KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                +   + +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KEWHKQSFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +   N   ++   K ++  I + E      I  K  V TGTL +  R + +  + +LG  
Sbjct: 547 RV--NRTRIDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSR-SRDEFKALIEKLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD ++ G+  GSKL KA++L +K ++E  F  L+++
Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLIKAKELEIKCIDESAFNELVKE 647


>gi|311744048|ref|ZP_07717854.1| NAD-dependent DNA ligase LigA [Aeromicrobium marinum DSM 15272]
 gi|311313178|gb|EFQ83089.1| NAD-dependent DNA ligase LigA [Aeromicrobium marinum DSM 15272]
          Length = 782

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 218/813 (26%), Positives = 357/813 (43%), Gaps = 128/813 (15%)

Query: 1   MKKRQLI-PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59
           M   +   P+  L  ++AR E+++L + I+   + YY     ++ D+ YD   R+ +A+ 
Sbjct: 1   MATDESPGPVPDL--DEARAEVTTLLERIAEAREAYYGQDASLVDDATYDGWLRQLEAVE 58

Query: 60  HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
              P+L      + P   +G      L  V H+   LSL+ ++  ++LR + T+      
Sbjct: 59  RRHPELQGQ---DSPTLNVGAATTTDLAPVVHAERMLSLDNVFGADELRAWCTKTTEAAG 115

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
           +     + +  E KIDG  +++RYE G+ V AA RGDG  GEDV++    +  +PR L  
Sbjct: 116 R----PVRWLTEAKIDGLAVSLRYEHGRLVSAATRGDGRVGEDVTSNAARLAGVPRELDG 171

Query: 180 N-IPEIIEVRGEVYISKNDFLALNDEMIAVGR------------------------KPYA 214
              P ++EVRGEV+I+   F  LN     +                            +A
Sbjct: 172 EGHPALVEVRGEVFIAVEAFRRLNALQADLRERVVADATARGQETGRAEASAARRFPAFA 231

Query: 215 NPRNAASGILRRLNPTD----------ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
           NPRNAA+G LR+L                  L+ +VHG+G   +     Q E+   +   
Sbjct: 232 NPRNAAAGGLRQLLSKKDGLELEAGLARIESLSLYVHGIGAWDDPPVAAQSEVYDLLASW 291

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           G PV+   R  +    +V    E+ + R+ + ++IDG+V KVDE +L  +LGE +R+PRW
Sbjct: 292 GLPVSPHGRVLDGVDEVVDRIAELGTGRAAIEHEIDGVVVKVDELALHPELGETSRAPRW 351

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
            I++K+  ++  TRLLDI + +GRTG  TP A +EPV++ G+++  ATLHN+D ++    
Sbjct: 352 AIAYKYPPEEVHTRLLDIVVSVGRTGRATPFAMMEPVHVAGSVVRQATLHNQDVVR---- 407

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                   + + +GD V++++AG+VIP+V+  +   R      F  P+ CP C + +   
Sbjct: 408 -------EKGVLIGDTVVLRKAGDVIPEVLGPVAELRDGSEVEFVMPTRCPECDTALRPM 460

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA--- 501
                 +     RC     C AQ   R++H  SR A +IE LG+       + E PA   
Sbjct: 461 -----KEGDIDLRCPNARTCPAQVRGRVEHVGSRGALDIEALGEVTAAALTQPEVPAEPP 515

Query: 502 ---------------------------FSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
                                         RI        RR+     +     GF D S
Sbjct: 516 LRTEAALFELDLATLVPIEVVVRDAETGQPRIDPTTGEPVRRRPFQRVETTYPPGFEDAS 575

Query: 535 VTNLY---------------------DSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
                                     + ++K R   L RF+ +L IRHVG   AR+LA++
Sbjct: 576 AAERRAAGVRKDHRTILPSAQALTLLEELDKARTKELWRFLVALSIRHVGPVAARALAQH 635

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S +                   L  V  VG  IA ++ ++     ++  +        
Sbjct: 636 FGSVRAIEAAGE----------DELAVVDGVGPTIAGSVKDWLTVDWHVEILRRWEAAGV 685

Query: 634 P------SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
                              +    +V TG+L+   R   +E +   G   +  +S+KTD 
Sbjct: 686 RLHIPDHPGPGAADAEPGPLSGLTIVVTGSLEGFTRDSVKEAILVRGGKAAGSVSKKTDY 745

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++VG+N GSK EKA+QLG+ I++E  F+ LL +
Sbjct: 746 VVVGENAGSKAEKAEQLGIPILDEAGFVELLDR 778


>gi|305431677|ref|ZP_07400846.1| NAD-dependent DNA ligase LigA [Campylobacter coli JV20]
 gi|304445272|gb|EFM37916.1| NAD-dependent DNA ligase LigA [Campylobacter coli JV20]
          Length = 647

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 212/704 (30%), Positives = 348/704 (49%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +KE        +     YY+  +P+  D EYDAL R                  + P  K
Sbjct: 3   KKEYLEKVALAASWMRAYYEKDEPLASDEEYDALIRELRVFEEQN---KDEISKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP   ++N  E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVLEIDNIP--KTINYKEKIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G  + +      E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ ++       ++  YNE+ S+R   P  +DG+V +VD+ +L K+LG
Sbjct: 229 VMQFIRELGFLKDDFIKLCANLDEVLKAYNELLSLRDQKPMMMDGMVVRVDDLALCKELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +                 + C  + +  + HFVS+   NI+GLG+  ++  FK
Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLFK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +           I TL+       +  E + GF +  + N+ ++I + R+  L RFI +
Sbjct: 449 EK----------KINTLESIFHLKFSDFEGLEGFKEKKINNILNAIEQARDCELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ LA  +                +     +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLALSFG------------KEWHKQSLEAYANLEGFGEQMALSLCEF- 545

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            +  N   ++   K ++    + +    S I  K  V TG L +  R + +  +  LG  
Sbjct: 546 -SRVNSARIDEFYKLLNLKEQKVQIQEDSVIFGKTFVITGALSR-PRDEFKNLIESLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD ++ G   GSKL+KAQ+LGVK ++E +F  L+++
Sbjct: 604 VSGSVSKKTDYVLFGQEAGSKLDKAQELGVKCIDENEFNELIEK 647


>gi|161760708|ref|YP_062356.2| NAD-dependent DNA ligase LigA [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 755

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 221/779 (28%), Positives = 339/779 (43%), Gaps = 95/779 (12%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E      AR E   L   I    D YY+    ++ D EYD + RR + +    P+L   +
Sbjct: 6   EDQVAADARAEAQGLTTRILELRDAYYELDTVLVSDEEYDRMLRRLEELERLHPEL---Q 62

Query: 70  DPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             + P   +GG    +    V H+   LSL+ +++ E    +  +I R   ++    + +
Sbjct: 63  SQDSPTQTVGGRAQTTLFAPVEHAERMLSLDNVFSFEAFEAWAAKIERDAGRR----VDY 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--LNIPEIIE 186
             E KIDG  I +RYE G  V AA RGDG  GEDV+  IR IP I + LS     P ++E
Sbjct: 119 LCELKIDGLAINLRYENGVLVTAATRGDGVVGEDVTENIRHIPAITQRLSGAGPFPPVVE 178

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN----------PTDITRYL 236
           VRGEV+     F  LN    A G + +AN RNAASG LR+              D    L
Sbjct: 179 VRGEVFFPVAKFEELNANQQAAGERVFANARNAASGSLRQKAEGKNPAQRRLMRDRLGRL 238

Query: 237 NFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
              VHG+G         Q  + + +R  G P +   R   T      +       R T+ 
Sbjct: 239 RMLVHGIGAWPNPPVATQSGVYELLRSWGLPTSAHGRVFGTVQEAADFIGRSAERRDTVE 298

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           ++IDG+V KVDE  L  +LG  +R+PRW I++K+  +Q +T+LLDI + +GRTG  TP A
Sbjct: 299 HEIDGVVIKVDELVLHDELGATSRAPRWAIAYKYPPEQVNTKLLDIVVSVGRTGRATPFA 358

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            +E V + G+ +  ATLHN+D +K            + + +GD V++++AG+VIP+V+  
Sbjct: 359 VMEKVKVAGSEVRQATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEVLGP 407

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           +V  R    + F+ P+ CP C + +         +     RC     C AQ   R++H  
Sbjct: 408 VVELRDGTEREFAMPTDCPECGTPLA-----PAKEGDIDLRCPNAEFCPAQVRGRVEHIG 462

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDP---------AFSIRIPADIFTL-------------- 513
           SR   +IE LG+       +   P                 D+F +              
Sbjct: 463 SRGGLDIEALGEVAAAALTQPRFPERAPLPTEAGLFGLRLEDLFPIEVVVRDSETGLPKL 522

Query: 514 ----------------QRRQQTSTTKIENILGF----GDVSVTNLYDSINKRRNISLERF 553
                           Q++      + E   G        S   L  ++   R   L R 
Sbjct: 523 TETGVEKVDAPFRRRRQKKDGAFDPEAEAFDGDEIAVPSKSAIELLANLRAARTKPLWRI 582

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           + SL IRHVG   AR+LA ++ S                     L  V  VG I+A A++
Sbjct: 583 LVSLNIRHVGPVAARALADHFGSLDAIRAA----------SRDELAAVDGVGGIVADAVL 632

Query: 614 EFYQNPRNICAVEALLKEVSPSIGR------HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +++   +   VE   ++                     +    +V TG+L+   R  AQ
Sbjct: 633 SWFEIGWHCEIVENWARDGVQFAIPGHPGPGRADTGGGVLSGLTVVATGSLEGYTREAAQ 692

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           E +   G   ++ +S+KTD +  G   GSKL KA++LGV++++  QF  L++Q    L 
Sbjct: 693 EAIVAAGGKAASSVSKKTDFVAAGPGAGSKLAKAEELGVRVLDAAQFTILVEQGPGALP 751


>gi|188527537|ref|YP_001910224.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Shi470]
 gi|254781347|sp|B2UTL2|DNLJ_HELPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|188143777|gb|ACD48194.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Shi470]
          Length = 656

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 223/711 (31%), Positives = 352/711 (49%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY     I+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDSIVSDAVYDELYQELKAYEGKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGATTPNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAY-----PSASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHA--IAYNGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFISF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ I  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGIINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LA+Y L+    ++                + +   G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLARYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    +   ++  SS   NK +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAEEKQESSSVFSNKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+N GSKL  A++ GV ++NEE+ L  L++++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKEFD 656


>gi|86149767|ref|ZP_01067996.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88597007|ref|ZP_01100243.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218562237|ref|YP_002344016.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|122952953|sp|Q0PAT1|DNLJ_CAMJE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|85839585|gb|EAQ56845.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190696|gb|EAQ94669.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112359943|emb|CAL34732.1| DNA ligase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284925847|gb|ADC28199.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315927323|gb|EFV06667.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315930607|gb|EFV09637.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 305]
          Length = 647

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 208/704 (29%), Positives = 345/704 (49%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYDAL R                  + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFEEQN---KDEISKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP   ++   E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G  + +      E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ VR       ++  Y+E+ ++R   P  +DG+V +VD+ +L ++LG
Sbjct: 229 VMQFIRELGFLKDDFVRLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +                 + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +           I TL+          E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HK----------KITTLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                    + +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KEWYKQSFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +   N   ++   K ++  I + E      I  K  V TGTL +  R + +  + +LG  
Sbjct: 547 RV--NRTRIDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSR-PRDEFKALIEKLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD ++ G+  GSKL KA++L VK ++E  F  L+++
Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE 647


>gi|294789790|ref|ZP_06755020.1| DNA ligase, NAD-dependent [Simonsiella muelleri ATCC 29453]
 gi|294482296|gb|EFG29993.1| DNA ligase, NAD-dependent [Simonsiella muelleri ATCC 29453]
          Length = 798

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 245/811 (30%), Positives = 384/811 (47%), Gaps = 147/811 (18%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L ++++ +   YY    P + DSEYD L R  +A+  A+P       P  P  ++GG + 
Sbjct: 14  LTEKLNRYAHEYYTLDAPSVPDSEYDRLYRELEALEMAYPTF---RLPESPTQRVGGAIL 70

Query: 84  LSLFKVTHSIPTLSLEKIWNI---------EDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
                V H IP LSL   ++           +   F  R+ +  +    + + +T+EPK 
Sbjct: 71  REFASVRHKIPMLSLNNAFSPLDDNGKFIHTETLAFDERVRKDLEL---SKVEYTIEPKF 127

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193
           DG  I++ Y+ G F+ AA RGDG +GEDV+  I+ +  IP  L     P++IEVRGEV +
Sbjct: 128 DGLAISLLYQDGIFIQAATRGDGITGEDVTENIKTVRNIPLKLQGQYIPDLIEVRGEVLM 187

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL----GKTSE 248
            K DF  LN   IA  +K +ANPRNAA+G LR+LN      R L+FF +G+    G   E
Sbjct: 188 LKKDFEQLNQRQIAQNQKTFANPRNAAAGSLRQLNSRIAAERKLHFFGYGIAQFSGIQPE 247

Query: 249 IFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              K   E L  ++ LGF               ++  Y  + + RSTLPY+IDG+V KV+
Sbjct: 248 NAPKTHAEELLWLQDLGFSLPTGNWHICANIAEVLQQYENLNAKRSTLPYEIDGMVIKVN 307

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             + Q++LG  +R+PRW I+HKF  ++A T++  ID+Q+GRTG +TPVARL+PV++GG +
Sbjct: 308 SLAEQEKLGFVSRAPRWAIAHKFPAEEAMTQVETIDVQVGRTGAITPVARLKPVSVGGVI 367

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH----- 422
           + NATLHN+D +             +DIR+GD V+V+RAG+VIP+VV +++  R      
Sbjct: 368 VINATLHNQDEVSR-----------KDIRIGDTVVVRRAGDVIPEVVRVVLEHRPMKIVE 416

Query: 423 -------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463
                              P+  PF  P  CP+C S + R+         A  RCTGG+ 
Sbjct: 417 IQSNNIQDDLFPTTKTQSVPEFPPFRLPENCPVCGSAIEREAGE------AIARCTGGMI 470

Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK 523
           C AQ+ + L HF SR A +I GLG +Q++     +     +   ADI+ L   +      
Sbjct: 471 CKAQRSQGLIHFASRKAMDIVGLGDKQIEALVTQD----ILHSFADIYQLDIEKLQQIKD 526

Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSL-------------------------- 557
            ++          N+   I   R   L RF++SL                          
Sbjct: 527 SKS---SATKWAENILIGIENSRKPLLSRFLYSLGIRHVGESTAKQLANAFGDLATVRHA 583

Query: 558 ------GIRHVGAEIARSLAKYYL---------SYQNFAQEINNIIAHNNDDWLS----L 598
                  +  +G+ +A S+A Y+              F +  + ++  N  D+      L
Sbjct: 584 PEPVLACLPDIGSVVAHSIAHYFRQPEQQKLLDDLLRFVEPQHTVLTINICDFAKPARWL 643

Query: 599 IRVPL--VGDIIAQAI---------------------VEFYQNPRNICAVEALLKEVSPS 635
            R+P   + +  AQ +                      ++ +   N   +  + + ++  
Sbjct: 644 SRLPSYKLSEKRAQELWDLAGNSVDGLLTDRVLPREWQDWRKIAENAALLREIDESLTKF 703

Query: 636 IGRHEK---------NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
             +  +         ++ SEI  K  V TGTL  ++R  A   +   G  VS  +S+KTD
Sbjct: 704 DSKQNEAYYLPLGTGSLKSEITGKTFVLTGTLPTLKREDAAAMIEAAGGKVSGSVSKKTD 763

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            ++ G+  GSKLEKA  LG+ ++NE++FL +
Sbjct: 764 FVVAGEAAGSKLEKALSLGITVLNEDEFLAM 794


>gi|166032192|ref|ZP_02235021.1| hypothetical protein DORFOR_01895 [Dorea formicigenerans ATCC
           27755]
 gi|166027915|gb|EDR46672.1| hypothetical protein DORFOR_01895 [Dorea formicigenerans ATCC
           27755]
          Length = 690

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 188/720 (26%), Positives = 309/720 (42%), Gaps = 64/720 (8%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +++S+    K + +L ++++ +   YY    P++ D+EYD L      +      +    
Sbjct: 25  DSMSV----KRIKNLVKQLNEYRHAYYNQDAPLVSDAEYDRLFDELKELEEQTGFILS-- 78

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             N P   +G      L KVTH IP LSLEK   I +L  F+              + F 
Sbjct: 79  --NSPTQTVGYYPVSELAKVTHPIPLLSLEKTKLISELLDFMK----------GQEVLFM 126

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
              K+DG    + YE G+ + A+ RGDG  GED++  I A   +P  L++   E + + G
Sbjct: 127 --LKLDGLTTKLIYEDGRLIQASTRGDGEVGEDITHNIPAFLNVP--LTIPHKERLVITG 182

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E +I  NDF  L D +     KPY N RN ASG +R L+P +   R + F    + +  E
Sbjct: 183 ESFIPTNDFERLKDTLRDGNGKPYKNGRNFASGSVRSLDPKNCIGRCVRFLPFNVLEGME 242

Query: 249 IFAKGQYEMLQKMRCLG-----FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                     +            P  +      +      +  E+ S  + L   IDG+V
Sbjct: 243 DVPFPDSRACKLEGLTHLGFGYCPFFSISGTGLSKEYAEKFIQELVSTAANLHLPIDGIV 302

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
              D  S  K  G+     +  +++KF +    T L +I+    R G + PV   + V I
Sbjct: 303 MIFDSLSYSKSCGKTGHHYKDGLAYKFEDDTYETFLREIEWTPTRFGEIAPVGIFDTVEI 362

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ A+LHN  +IK L+           +  G R+LV +   +IP + D +   R+ 
Sbjct: 363 DGCDVSRASLHNLTFIKNLE-----------LVPGCRILVSKRNMIIPHIEDNLDRGRYT 411

Query: 424 DAQPFSFPSFCPICQSRVV-RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           D      P  CP C S+          G+ V    C     C +Q   R  HF S+ A N
Sbjct: 412 D----ITPPVCPCCGSKTRTYSRKTSDGRTVETLHCDNPQ-CDSQITRRFVHFASKKAMN 466

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGL +  L+ F         +    DI+ L+  ++     I  + G+G+ S   L++SI
Sbjct: 467 IEGLSEATLEKFLN----LGYLHSFQDIYHLEEHRE----DIVALDGYGEKSFDRLWESI 518

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRV 601
           N  R  S  R++ S+ I  +G   +R L   +  +   F Q                 ++
Sbjct: 519 NASRRTSFVRYLVSMDIPMIGRTKSRILDTVFSGNLTAFEQAAVGDY--------DFTQL 570

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQ 659
              G+I+   I  ++ +  N+   + L  E +    + E      ++     +V TG L+
Sbjct: 571 EDFGEILNHNIHSWFADEANLDLWKNLQNEFTFEQRKEETIMTKENKFTGCTIVATGKLE 630

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R    + + +LGA   + +++KTD +I G+  GSKL KAQ LG+ I+ E +FL ++ 
Sbjct: 631 HFTRDGINDKILELGAKPGSSVTKKTDYLICGEKAGSKLAKAQSLGIPILTEAEFLEMIA 690


>gi|330502846|ref|YP_004379715.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina NK-01]
 gi|328917132|gb|AEB57963.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina NK-01]
          Length = 786

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 220/642 (34%), Positives = 342/642 (53%), Gaps = 48/642 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +  A + +S L  E+  H+  YY   +P + D+EYD L R   A+    P+L     P  
Sbjct: 1   MTDAAQRISELRNELDAHNYRYYVLDEPSVPDAEYDRLFRELQALEAEHPELV---TPES 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++GGE   +  +V H +P LSL   +  +DLR F   +             D   I 
Sbjct: 58  PTQRVGGEALSAFGEVRHEVPMLSLGNAFEEDDLRAFDRSVQNGLGVSGGDLFGDGAEIE 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++RYE G+ V  A RGDG +GED+++ +R I  +P  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLRYEHGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLQGEGWPQVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++ K+ F  LN     +G K +ANPRNAA+G LR+L+P    +R L F  +G+G+
Sbjct: 178 VRGEVFMPKSGFEELNARQAEIGGKTFANPRNAAAGSLRQLDPKITASRPLEFCCYGVGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S      Q  MLQ+++  G P++  ++ A      + YY ++   R +L YDIDG+V+K
Sbjct: 238 VSGELPGTQVAMLQQLKAWGVPISRELKLAKGVEACLDYYRDIGQRRMSLAYDIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+    Q+QLG RAR+P W I+HKF  ++  T LLD++ Q+GRTG +TPVARL PV + G
Sbjct: 298 VNNIEDQQQLGFRARTPHWAIAHKFPAQEELTELLDVEFQVGRTGAVTPVARLHPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+V+ ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARL-----------GVMIGDTVIIRRAGDVIPQVMAVVPERRPENA 406

Query: 426 QPFSFPSFCPICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S       V R    ++    + +RC G L+C AQ  + + HFVSR 
Sbjct: 407 RPVQIPEQCPVCGSAVERTQLVRRSKGKESLSEGSVYRCVGRLSCQAQLKQAIIHFVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L   Q         + GF +VS   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLTFEQIIG------LEGFAEVSSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   +  +L RFI++LGI  VG E A+ LA+   S +   + +  +          L 
Sbjct: 517 KAIEDSKRPALARFIYALGIPDVGEETAKVLARSLASLERVREALPQV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
            +P +G  +A  I  F+++  N   + ALL E    +    +
Sbjct: 567 YLPDIGLEVAHEIHSFFEDEHNQQVISALLGECGLELQEEGE 608



 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 95/255 (37%), Gaps = 20/255 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   ++E + +          D    +      F     +         +   G   
Sbjct: 546 VLARSLASLERVREALPQVLTYLPDIGLEVAHEIHSF--FEDEHNQQVISALLGECGLEL 603

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                 S       +L   +  L I  VG   A+ LA+ + S +               D
Sbjct: 604 QEEGELSAEFSAIATLGGMLDKLNIPTVGPGAAQKLAERFGSLEGVL----------GGD 653

Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIEN 649
           WL +   +P   +  A+A+ EF+ +  N        + L           +      +  
Sbjct: 654 WLDMRQALP---EKQAKAVREFFDSVENAQLACAIEQQLRDFGMHWESEKKVAEGLPLAG 710

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +  V TGTL+ + R  A+  +  LGA V+  +S KT  ++ G   GSKL KA +LGVK++
Sbjct: 711 QTWVLTGTLEVMSRDVAKGKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGVKVL 770

Query: 710 NEEQFLFLLQQYNTT 724
           +E QFL  L+ Y   
Sbjct: 771 DEAQFLDQLKAYGIE 785


>gi|317009372|gb|ADU79952.1| NAD-dependent DNA ligase LigA [Helicobacter pylori India7]
          Length = 656

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 222/709 (31%), Positives = 346/709 (48%), Gaps = 61/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE       ++     YY    PI+ D+ YD L +   A     P   ++   N P 
Sbjct: 3   KSQKEYLERIGYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPSHIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G        K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGATTTNPFNKNPHLMRMWSLDDVFNQNELQAWLQRILKAY-----PSASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVSATTRGNGLEGELVSANAKHIANIPHA--IAYKGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 EDFEALNKERLDANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R +    +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLNLNKNHQEIEENYHTLIRERESFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVAILEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  +   R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIVNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L+                      + +   G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGLN-------------ALEKSEAEFLEMEGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    +   ++  SS   NK +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSGVTEEKQKSSSVFSNKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LGA +++ +S KTD +IVG+N GSKL  A++ GV ++NEE+ L  L++
Sbjct: 606 NLGAKIASSVSAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKE 654


>gi|227499502|ref|ZP_03929609.1| DNA ligase (NAD(+)) [Anaerococcus tetradius ATCC 35098]
 gi|227218381|gb|EEI83632.1| DNA ligase (NAD(+)) [Anaerococcus tetradius ATCC 35098]
          Length = 666

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 191/715 (26%), Positives = 340/715 (47%), Gaps = 59/715 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++   R+E+S L ++I+  +  YY   +P++ D EYD L  +   + +     +     
Sbjct: 1   MNM---REEISQLIEKINELNYHYYTLDEPLVSDGEYDKLYDKLKKLENE----SGIVLD 53

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------S 125
           N P   +GG++     K  H    LS  K  +  +L  +I R  R  ++ +DN       
Sbjct: 54  NSPTQIVGGQILDKFEKHYHLTKLLSQNKAQSYAELEDWIDRCQRLRKEYNDNHEDKLDE 113

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I F +E K DG  + + YE GK   AA RG+G  GE++ A ++ I +IP  +      ++
Sbjct: 114 IEFIMEYKFDGLTVNLTYENGKLTSAASRGNGVVGEEILAQVKTIKSIPLTIKE--ESLL 171

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245
           E++GE  +  ++    N +          N RNAA+G LR L+  +  R           
Sbjct: 172 EIQGEALMPLSELAKYNKD----NEIQLKNARNAAAGALRNLDTRETARRNLTAYFYAVP 227

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           T+ +  K + +ML  ++  GF ++   ++ +    I+     ++  R  +    DG+V K
Sbjct: 228 TNNLDFKTEEDMLDFLKNQGFNIHPYHKKVHNLDEIIRELKFIEEERKKIDILTDGVVIK 287

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +++   Q+ L    + PRW I+ KF  ++ +T L  +   +GRTG +TP A L+PV   G
Sbjct: 288 INDKKTQEVLSNTNKFPRWSIAFKFEAEEYTTTLRKVVWNVGRTGKVTPSAILDPVEFSG 347

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           A ++ ATL+N D I             + I++G RV ++R+ +VIP+++ ++   +   +
Sbjct: 348 ATVSRATLNNYDDI-----------LRKKIKIGSRVFIRRSNDVIPEILGVVDENQEGTS 396

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                P FCP C S ++++             C   ++C  Q L R++HF SR+A +IEG
Sbjct: 397 -EIEKPKFCPYCSSELIQE--------NVHIVCPNSISCKPQLLARIEHFASRNAMDIEG 447

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           L ++ +       D    I    DI+ L   Q         +  FGD    NL ++I   
Sbjct: 448 LSEKTIAQLMDELD----INEVDDIYDLTYEQLIK------LERFGDKKTKNLLEAIENS 497

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           + + L+ FI+++GI +VG   +R LA  + S+                    L  +  +G
Sbjct: 498 KKVDLQHFIYAIGIPNVGERTSRDLANKFKSFDKLRAS----------KVDELTDIDDIG 547

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +I A+ IVEF+ +P    ++E LL +        E N S  + N   V TGT++  +R  
Sbjct: 548 EITAENIVEFFSDPNISKSIENLLAKGIEISKPKEDNNSDGLNNLTFVITGTIENYKRDD 607

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +  + + G  V+  +S+ TDI++ G+  GSK  KA++L V+I  +++    L++
Sbjct: 608 IKNLIEKNGGKVTGSVSKNTDILLAGEKAGSKKTKAEELNVEIYEDQKLYDFLKE 662


>gi|153952455|ref|YP_001398174.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. doylei
           269.97]
 gi|190359241|sp|A7H3U4|DNLJ_CAMJD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|152939901|gb|ABS44642.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 647

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 206/704 (29%), Positives = 347/704 (49%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYDAL R                  + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFEEQN---KDEVSKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP   ++   + IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKKRIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G  + +      E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ ++       ++  Y+E+ ++R   P  +DG+V +VD+ +L ++LG
Sbjct: 229 VMQFVRDLGFLKDDFIKLCANLDEVLKAYDELLTLREKKPMMMDGMVVRVDDLALCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ I++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGINLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISHPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +                 + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +           I TL+       +  E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HK----------KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                +   + + + +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KEWHKQSFEAYVNLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +       ++   K ++  I + E    S I  K  V TGTL +  R + +  +  LG  
Sbjct: 547 RVNHTR--IDEFYKLLNLKIEKLEVKSDSVIFGKTFVITGTLSR-PRDEFKALIENLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD ++ G+  GSKL KA++L VK ++E  F  L+++
Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE 647


>gi|154174322|ref|YP_001408016.1| NAD-dependent DNA ligase LigA [Campylobacter curvus 525.92]
 gi|190359239|sp|A7GXS4|DNLJ_CAMC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|112803310|gb|EAU00654.1| DNA ligase, NAD-dependent [Campylobacter curvus 525.92]
          Length = 654

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 208/703 (29%), Positives = 342/703 (48%), Gaps = 61/703 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            +++   +    ++     YY    PI  D EYDAL     A     P          P 
Sbjct: 8   DSKESYENAVATLNAWAKAYYDDDAPIASDEEYDALYHEVLAYEQVNPAQKSLF---SPT 64

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            +IGG ++    K  H     S+E I++  +L  ++ R  +        ++ F  EPK D
Sbjct: 65  TRIGGGVSEGFSKARHIKQMWSMEDIFSQLELVAWLKRGEK-------QNLSFVAEPKFD 117

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + YEKG  V A  RGDG +GE+V+   R I +IP  L+++    IE+RGEV I K
Sbjct: 118 GASLNLLYEKGMLVRAITRGDGITGEEVTQNARVIKSIP--LNISYDGRIEIRGEVVIKK 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF A+N+E    G    +NPRNAA+G LR+L+      R L F   G+G    +     
Sbjct: 176 ADFDAINEERTRNGETLLSNPRNAAAGSLRQLDSAVTAKRKLLFIPWGVG-EQNLGLAKH 234

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E+++ +R LGF  ++  +  +   G+   YNE+   R      +DG+V +VD+ +  ++
Sbjct: 235 SEVMKFVRDLGFYRDDFFKILDA-DGLAGAYNELLKQRDEKDVMMDGMVIRVDDLARCEE 293

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   + P++M++ KF   + +TRLLD+ +Q+GR+G++TPV  L+ V I GA + +ATLH
Sbjct: 294 LGYTVKFPKFMVAFKFPAIEKTTRLLDVALQVGRSGVVTPVGVLDEVVIDGARVKSATLH 353

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I+ L            +   D + + R+G+VIPK+  +    R     P   P FC
Sbjct: 354 NFDEIERL-----------GVMKNDLISIIRSGDVIPKITSVFKERRDGTQTPIIRPKFC 402

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S ++ +                 L C A+ +  + H+ S+   NI+GLG+  ++  
Sbjct: 403 PECGSHLLDEG---------VFIKCQNLNCRARVINSIIHYASKKCLNIDGLGEAIINLL 453

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       I    DI++L+     +      + GF D    NL D+I   +  SL RFI
Sbjct: 454 YEK----GLISRVIDIYSLKFEDLMA------LEGFKDKKAQNLLDAIEASKGASLARFI 503

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             LG  H+G   A+ +A+ +   + + +           D+  +  +   G+ +A ++++
Sbjct: 504 TGLGCEHIGEVAAKKIAQNFG--EGWLEA----------DFDEVKNLEGFGEEMANSLMD 551

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F     N   + AL   V PS  R +   +     K +V TGTL +  R + +  +   G
Sbjct: 552 FI--EVNKDEILALQSIVRPSFERKQITQN-AFSGKSVVITGTLSR-PRDEIKAELEGYG 607

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           A V   +S+KTD ++ G N GSKL+KA +LGV++++E +F  L
Sbjct: 608 AKVVGSVSKKTDFVLAGSNAGSKLQKAVELGVRVIDEGEFERL 650


>gi|308184399|ref|YP_003928532.1| NAD-dependent DNA ligase LigA [Helicobacter pylori SJM180]
 gi|308060319|gb|ADO02215.1| NAD-dependent DNA ligase LigA [Helicobacter pylori SJM180]
          Length = 656

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 219/709 (30%), Positives = 347/709 (48%), Gaps = 61/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY   + I+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDESIVSDAVYDELYQELKAYEEENPNRIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G        K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGATTTNPFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAY-----PSASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y  GK V A  RG+G  GE V+   + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYHHGKLVSATTRGNGLEGELVTHNAKHIANIPHF--IAYNGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+G    +     
Sbjct: 173 EDFEALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVG-EHSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  +   R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L+    ++                + +   G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    +   ++  SS   +K +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAEEKQKSSSVFSDKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LGA +++ +S KTD +IVG+NPGSKL  AQ+ GV ++NEE+ L  L++
Sbjct: 606 NLGAKIASSVSAKTDFLIVGENPGSKLALAQKHGVSVLNEEELLKRLKE 654


>gi|81390835|sp|Q6AEE5|DNLJ_LEIXX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|50951550|gb|AAT89251.1| DNA ligase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 747

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 220/774 (28%), Positives = 338/774 (43%), Gaps = 95/774 (12%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
             AR E   L   I    D YY+    ++ D EYD + RR + +    P+L   +  + P
Sbjct: 3   ADARAEAQGLTTRILELRDAYYELDTVLVSDEEYDRMLRRLEELERLHPEL---QSQDSP 59

Query: 75  LNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              +GG    +    V H+   LSL+ +++ E    +  +I R   ++    + +  E K
Sbjct: 60  TQTVGGRAQTTLFAPVEHAERMLSLDNVFSFEAFEAWAAKIERDAGRR----VDYLCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--LNIPEIIEVRGEV 191
           IDG  I +RYE G  V AA RGDG  GEDV+  IR IP I + LS     P ++EVRGEV
Sbjct: 116 IDGLAINLRYENGVLVTAATRGDGVVGEDVTENIRHIPAITQRLSGAGPFPPVVEVRGEV 175

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN----------PTDITRYLNFFVH 241
           +     F  LN    A G + +AN RNAASG LR+              D    L   VH
Sbjct: 176 FFPVAKFEELNANQQAAGERVFANARNAASGSLRQKAEGKNPAQRRLMRDRLGRLRMLVH 235

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           G+G         Q  + + +R  G P +   R   T      +       R T+ ++IDG
Sbjct: 236 GIGAWPNPPVATQSGVYELLRSWGLPTSAHGRVFGTVQEAADFIGRSAERRDTVEHEIDG 295

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVDE  L  +LG  +R+PRW I++K+  +Q +T+LLDI + +GRTG  TP A +E V
Sbjct: 296 VVIKVDELVLHDELGATSRAPRWAIAYKYPPEQVNTKLLDIVVSVGRTGRATPFAVMEKV 355

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ +  ATLHN+D +K            + + +GD V++++AG+VIP+V+  +V  R
Sbjct: 356 KVAGSEVRQATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEVLGPVVELR 404

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + F+ P+ CP C + +         +     RC     C AQ   R++H  SR   
Sbjct: 405 DGTEREFAMPTDCPECGTPLA-----PAKEGDIDLRCPNAEFCPAQVRGRVEHIGSRGGL 459

Query: 482 NIEGLGKQQLDFFFKSEDP---------AFSIRIPADIFTL------------------- 513
           +IE LG+       +   P                 D+F +                   
Sbjct: 460 DIEALGEVAAAALTQPRFPERAPLPTEAGLFGLRLEDLFPIEVVVRDSETGLPKLTETGV 519

Query: 514 -----------QRRQQTSTTKIENILGF----GDVSVTNLYDSINKRRNISLERFIFSLG 558
                      Q++      + E   G        S   L  ++   R   L R + SL 
Sbjct: 520 EKVDAPFRRRRQKKDGAFDPEAEAFDGDEIAVPSKSAIELLANLRAARTKPLWRILVSLN 579

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           IRHVG   AR+LA ++ S                     L  V  VG I+A A++ +++ 
Sbjct: 580 IRHVGPVAARALADHFGSLDAIRAA----------SRDELAAVDGVGGIVADAVLSWFEI 629

Query: 619 PRNICAVEALLKEVSPSIGR------HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
             +   VE   ++                     +    +V TG+L+   R  AQE +  
Sbjct: 630 GWHCEIVENWARDGVQFAIPGHPGPGRADTGGGVLSGLTVVATGSLEGYTREAAQEAIVA 689

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            G   ++ +S+KTD +  G   GSKL KA++LGV++++  QF  L++Q    L 
Sbjct: 690 AGGKAASSVSKKTDFVAAGPGAGSKLAKAEELGVRVLDAAQFTILVEQGPGALP 743


>gi|315586702|gb|ADU41083.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 35A]
          Length = 656

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 224/711 (31%), Positives = 355/711 (49%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY    PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGAITTNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAY-----PSTSFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP V  +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHV--IAYNGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      ++NPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 KDFDALNKERLNANEPLFSNPRNAASGSLRQLDSKITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIQHLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L+    ++                + +   G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    + + ++  SS   +K +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQESSSVFSHKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656


>gi|57238218|ref|YP_178701.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni RM1221]
 gi|81353856|sp|Q5HVI4|DNLJ_CAMJR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|57167022|gb|AAW35801.1| DNA ligase, NAD-dependent [Campylobacter jejuni RM1221]
 gi|315058000|gb|ADT72329.1| DNA ligase [Campylobacter jejuni subsp. jejuni S3]
          Length = 647

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 207/704 (29%), Positives = 342/704 (48%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYDAL R                  + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFEEQN---KDEISKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP   ++   E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G  + +      E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ VR       ++  Y+E+  +R   P  +DG+V +VD+ +L ++LG
Sbjct: 229 VMQFIRELGFLKDDFVRLCANLDEVLKAYDELLVLREKKPMMMDGMVVRVDDLALCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G +TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGAITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +                 + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +           I TL+          E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HK----------KITTLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                    + +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KEWYKQSFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +       ++   K ++  I + E      I  K  V TGTL +  R + +  + +LG  
Sbjct: 547 RVNHTR--IDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSR-PRDEFKALIEKLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD ++ G+  GSKL KA++L VK ++E  F  L+++
Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE 647


>gi|332671254|ref|YP_004454262.1| DNA ligase, NAD-dependent [Cellulomonas fimi ATCC 484]
 gi|332340292|gb|AEE46875.1| DNA ligase, NAD-dependent [Cellulomonas fimi ATCC 484]
          Length = 834

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 207/787 (26%), Positives = 337/787 (42%), Gaps = 102/787 (12%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             QAR   S L + I      YY    P   D++YDA  R    +   +P L     P  
Sbjct: 27  PAQARHRWSELVERIDADQFAYYVLDAPPSSDADYDARLRELAELEERYPGLV---TPQS 83

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG  +       H    LSL+  ++ ED+  +  R  R       +   +  E K
Sbjct: 84  PTQRVGGTFSTDFATAAHVQRMLSLDNAFSDEDVAAWADRALRDLGAAAPH---YLCELK 140

Query: 134 IDGTMITIRY------EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEI 184
           IDG  I + Y      E  + V AA RGDG +GEDV+  +R I ++P VL  +    P++
Sbjct: 141 IDGLAIALLYQRPRPGEPARLVRAATRGDGRTGEDVTLNVRTIASVPDVLGGDPATHPDV 200

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           IE+RGEV++    F  LN+  +A G+ P+ANPRNAA+G LR+ +P    +R L  + HG+
Sbjct: 201 IEIRGEVFLPVEAFARLNEAQVAAGKAPFANPRNAAAGSLRQKDPRVTASRPLGMYAHGI 260

Query: 244 GKTSE-----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           G            + Q ++   +   G P ++  R  +   G+          R  + ++
Sbjct: 261 GAFERGSAGGPGIERQSQVYDLLASWGVPTSSHTRVVDGLDGVREMIAYYGEHRHDVEHE 320

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KVDE  LQ++LG  +R+PRW I++K+  ++  TRLL I++ IGRTG  TP A +
Sbjct: 321 IDGVVVKVDEIDLQRRLGATSRAPRWAIAYKYPPEEVVTRLLAIELGIGRTGRATPFAVM 380

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G+ +  ATLHN+D ++            + +RVGD V++++AG+VIP++V    
Sbjct: 381 EPVFVSGSTVRQATLHNQDVVR-----------AKGVRVGDMVVLRKAGDVIPEIVGPAP 429

Query: 419 N-----------------------------------ERHPDAQPFSFPSFCPICQSRVVR 443
                                                 + ++ P           SR   
Sbjct: 430 QAPDDTVERVEWHMPADCPECGTPLRPMREGDVDLRCPNAESCPAQVRGRVEHIGSRGAF 489

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS-------------------RDAFNIE 484
           D+        AA       +    + E     +                    R    IE
Sbjct: 490 DIEALGEVTAAALTQPDVPSTPPLRTEADLFALVGYGPDAPQDERARVRDASLRTLGAIE 549

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQ----RRQQTSTTKIENILGFGDVSVTNLYD 540
            + +       + ++     R       L      R +      E        +   L D
Sbjct: 550 VVVRDPETGLPREDEDGNVRRRAPFRRQLTWSKAERARAEADGRELPDWEPSTAARTLLD 609

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
            ++  +   L R + +L IR+VG   AR+LA+ + S     + +             L  
Sbjct: 610 QLDLAKEKELWRVLVALSIRNVGPTAARALAQEFRSMAALREVVE---GDPVAAAERLSG 666

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE---------NKK 651
           V  VG  IAQ++V+++  P +   V+A             + V+  +E            
Sbjct: 667 VDGVGPTIAQSLVDWFATPWHAAVVDAWAAAGVRMADTAGEQVARTLEVADEGGTVRGLT 726

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
           +V TG L++  R +A+E +   G   +  +S+KTD ++VG+N GSK  KA++LG++I++E
Sbjct: 727 VVVTGGLERFSRDEAKEAILSRGGKAAGSVSKKTDFVVVGENAGSKETKARELGLRILDE 786

Query: 712 EQFLFLL 718
             F  LL
Sbjct: 787 AGFEALL 793


>gi|317012429|gb|ADU83037.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Lithuania75]
          Length = 656

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 221/709 (31%), Positives = 350/709 (49%), Gaps = 61/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE       ++     YY   +PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIAYLNTLSHHYYNLDEPIVSDAIYDELYQELKAYEEKNPNDIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      +  F   PK+D
Sbjct: 60  QKVGATTTNSFSKNPHLMRMWSLDDVFNQNELQAWLQRILKAY-----PNASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHF--IAYDGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E  +QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELDIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+I  ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAIINRATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKVERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIVNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LA+Y L+    ++                + +   G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLARYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L + ++P    +   ++  SS   NK +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFELLNPKNSDMAEEKQESSSVFNNKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LGA +++ +S KTD +I G+NPGSKL  AQ+ GV ++NEE+ L  L++
Sbjct: 606 NLGAKIASSVSTKTDFLIAGENPGSKLSLAQKHGVSVLNEEELLKHLKE 654


>gi|146307768|ref|YP_001188233.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina ymp]
 gi|190359273|sp|A4XVY5|DNLJ_PSEMY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145575969|gb|ABP85501.1| DNA ligase, NAD-dependent [Pseudomonas mendocina ymp]
          Length = 786

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 226/642 (35%), Positives = 341/642 (53%), Gaps = 48/642 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +  A + +S L  E+  H+  YY   +P + D+EYD L R   A+    P+L     P  
Sbjct: 1   MTDAAQRISELRNELDAHNYRYYVLDEPSVPDAEYDRLFRELQALEAEHPELV---TPES 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++GGE   +  +V H +P LSL   +  +DLR F   +         +       + 
Sbjct: 58  PTQRVGGEALSAFGEVRHEVPMLSLGNAFEEDDLRAFDRSVQSGLGLAGGDLFGGGAEVE 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++RYE G+ V  A RGDG +GED+SA +R I  +P  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLRYENGQLVRGATRGDGSTGEDISANVRTIRNVPLKLQGEGWPQVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++ K  F  LN      G K +ANPRNAA+G LR+L+P    +R L F  +G+G+
Sbjct: 178 VRGEVFMPKAGFEELNARQAEAGGKTFANPRNAAAGSLRQLDPKITASRPLEFCCYGVGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S      Q  MLQ+++  G P++  ++ A      + YY ++   R +L YDIDG+V+K
Sbjct: 238 VSGELPGTQVAMLQQLKAWGIPISRELKLAKGVEACLDYYRDIGQRRMSLAYDIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+    Q+QLG RAR+P W I+HKF  ++  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNIEDQQQLGFRARTPHWAIAHKFPAQEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+V+ ++   R  DA
Sbjct: 358 VMVANATLHNMDEVARL-----------GVMIGDTVIIRRAGDVIPQVMAVVPERRPADA 406

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVA------AHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S V R    K  K  A       +RC G L+C AQ  + + HFVSR 
Sbjct: 407 RPVHIPEQCPVCGSAVERTQLIKRSKGKASVSEGSVYRCVGRLSCQAQLKQAIIHFVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L   Q         + GF +VS   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLTYEQIIG------LEGFAEVSSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   +  SL RFI++LGI  VG E A+ LA+   S +   Q +  +          L 
Sbjct: 517 AAIENSKRPSLARFIYALGIPDVGEETAKVLARSLASLERVRQALPEV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
            +P +G  +A  I  F+++  N   + ALL E    +    +
Sbjct: 567 YLPDIGLEVAHEIHSFFEDAHNQQVISALLGECGLELQDEGE 608



 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/255 (22%), Positives = 97/255 (38%), Gaps = 20/255 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   ++E + +   +      D    +      F               +   G   
Sbjct: 546 VLARSLASLERVRQALPEVLTYLPDIGLEVAHEIHSF--FEDAHNQQVISALLGECGLEL 603

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                 S       +L   +  L I  VG   A+ LA+ + S +             N D
Sbjct: 604 QDEGELSAEFSAVATLGGMLDKLNIPTVGPGAAQKLAERFGSLEGVL----------NGD 653

Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRN----ICAVEALLKEVSPSIGRHEKNVSSEIEN 649
           WL +   +P   +  A+A+ EF+    N        + L +         +      +  
Sbjct: 654 WLDMRQALP---ERQAKAVREFFDETANAQRARAIEQQLREFGMHWESEKKVAEGLPLAG 710

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +  V TGTL+ + R  A+E +  LGA V+  +S KT  ++ G   GSKL KA +LGVK++
Sbjct: 711 QTWVLTGTLEVMSRDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGVKVL 770

Query: 710 NEEQFLFLLQQYNTT 724
           +E QFL  L+ Y   
Sbjct: 771 DEAQFLEQLKSYGIE 785


>gi|307637302|gb|ADN79752.1| NAD-dependent DNA ligase [Helicobacter pylori 908]
 gi|325995893|gb|ADZ51298.1| DNA ligase [Helicobacter pylori 2018]
 gi|325997488|gb|ADZ49696.1| NAD-dependent DNA ligase [Helicobacter pylori 2017]
          Length = 656

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 217/709 (30%), Positives = 345/709 (48%), Gaps = 61/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY   + I+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDESIVSDAVYDELYQELKAYEEENPNHIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G        K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGATATNEFSKNPHLMRMWSLDDVFNQNELQAWLQRILKAY-----PSASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE V+   + I  IP    +     IE+RGEV I+K
Sbjct: 115 GVSLNLLYQHGKLVSATTRGNGLEGELVTNNAKHIANIPHS--IAYNGEIEIRGEVIIAK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 EDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E  +QK+
Sbjct: 232 KECLDFIVSLGFSTIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELDIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA++  ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMVNRATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R    Q    P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQQKIMHPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L     ++                + +   G  +A ++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGLHVLEKSEA-------------EFLEMEGFGVEMAHSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P        ++  SS   +K +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKSSDTTEEKQKSSSVFSDKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LGA +++ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++
Sbjct: 606 NLGAKIASSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKE 654


>gi|313888253|ref|ZP_07821924.1| DNA ligase (NAD+) [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845656|gb|EFR33046.1| DNA ligase (NAD+) [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 665

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 208/712 (29%), Positives = 344/712 (48%), Gaps = 59/712 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   KE+ +L +EI   +  YY    P++ D+EYD L  +   +       + +  P  
Sbjct: 1   MKDKIKEMENLIKEIDKLNYHYYTLDDPLLSDAEYDKLYDKLVNLEKE----SGTVLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI------F 127
           P  ++GG +     K TH     S++K    E L  +  RI +F    + N++       
Sbjct: 57  PTTRVGGAVLSKFEKHTHLARLYSMDKAQGDEALLGWFNRIEKFVSDYNQNNVNKLPEPE 116

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           F +E K DG  I + YE    V A+ RG+G  GE++   ++ I ++P  L ++ P  IEV
Sbjct: 117 FIVELKFDGLTINLTYENQNLVMASTRGNGIIGEEILEQVKTIYSVP--LRISYPGKIEV 174

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           +GE  +  ++    N        +   N RNAA+G LR L+P     R L  F + +G  
Sbjct: 175 QGEGLMPLSELEKYN----QENDEKLKNARNAAAGALRNLDPKVTKKRNLTAFFYNVGYI 230

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            E   K   ++   +R   F V+    +   F  I     E+   R+ L   IDG+  KV
Sbjct: 231 EEDMFKSDDDIKNFLRENNFKVSKYNFKVKKFSDITQKIKEIGENRNKLDVLIDGVTIKV 290

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++   +K LG   + PRW +++KF  ++ ST LLD+   +GRT  +TP A LEPV+IGG 
Sbjct: 291 NDIETRKALGYTNKFPRWAVAYKFEAEEISTTLLDVVWNVGRTAKVTPSAILEPVDIGGV 350

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATL+N D I             + +++G RVL++R+ +VIP+++  + ++   + +
Sbjct: 351 TVQRATLNNYDDI-----------LRKKVKIGSRVLIRRSNDVIPEILGTLPSD--NETR 397

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP C S + +D             C   L+C  Q + RL HF SRDA +IEG 
Sbjct: 398 EIEKPKTCPYCGSHLYQD--------GVHIFCPNTLSCVPQLVSRLTHFASRDAMDIEGF 449

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            ++ ++    +      ++   DI+ L+            I GF +    NL ++I   +
Sbjct: 450 SEKTIEKLMATIG----LKEIPDIYKLKYEDIIK------IEGFKEKRTNNLLNAIENSK 499

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              L  FI++LGI +VG + AR LA Y+ S+                    L+ +  +G+
Sbjct: 500 KPHLSNFIYALGIPNVGIKTARDLADYFKSFDKLKNSQE----------EELVSIGDIGN 549

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I A+ IVEF+ + R I AV+ L       +   +      ++    V TGTL+ I R + 
Sbjct: 550 ITAKEIVEFFHDDRIIGAVDELFDLGLKPVYEDDNKGPKPLDKNTFVLTGTLE-IPRKEL 608

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +E +  LGA V+  +S+ TD ++VG+NPGSK EKA+ L +KI++ ++   L+
Sbjct: 609 EEKLISLGAKVTGSVSKNTDYVVVGENPGSKYEKARSLDIKILSLKELEDLV 660


>gi|118444950|ref|YP_878905.1| NAD-dependent DNA ligase LigA [Clostridium novyi NT]
 gi|166215579|sp|A0Q2Q3|DNLJ_CLONN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118135406|gb|ABK62450.1| DNA ligase, NAD-dependent [Clostridium novyi NT]
          Length = 664

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 197/713 (27%), Positives = 352/713 (49%), Gaps = 58/713 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  +  +  L +E++     YY    P + D +YD    +   +            P  
Sbjct: 1   MEDKKLLIYELVEELNKLAYEYYVLDNPSVSDKDYDKKYDKLVELEKE----TGLVLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127
           P  ++G  +     K TH     SL K  +++++  +  +  +   + +         I 
Sbjct: 57  PTQRVGDVVLSKFDKYTHKGKLWSLGKAQSLKEVEDWHNKNVKAVNEYNLTHDDKLPPIK 116

Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  I   Y E G  V AA RG G  GE+++A  + I TIP  L ++   +IE
Sbjct: 117 YIITKKFDGLTINCTYNEDGILVTAATRGTGEIGEEITAQAKTIKTIP--LKIDNDAVIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245
           V GE  ++K  F   N   +     P  N RN A+G LR LN  +   R L+ F + +G 
Sbjct: 175 VHGEAIMTKEAFEEYNKVAV----VPLKNLRNGAAGALRNLNVKETARRNLSAFFYDIGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EML+ ++  G P+++   + +T   I    N ++ IR+ L YDIDG V  
Sbjct: 231 NEGTPFKTYGEMLKFIKDHGIPMDDYAMECSTIEEIEKEINYIEEIRNKLNYDIDGAVIA 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   ++ LG   + P+W +++KF  ++A+T+LL+++  +GR+G +TP A LEPV IGG
Sbjct: 291 VDDMKTRELLGYTVKFPKWALAYKFEAQEATTKLLEVEWNVGRSGRVTPTAILEPVEIGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D I+            + +++G  V ++R+ +VIP+++ ++       +
Sbjct: 351 VTVKRATLNNMDDIER-----------KGVKLGSTVFLRRSNDVIPEIMGVVEES-LEGS 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P+ CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 KDIEAPTTCPYCGSEIVQE--------GVHYFCENTLSCKPQLVKSIVHFGSREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+  +    I+  +D++ +++           +  FG+    NL D+I   
Sbjct: 451 FSEKTAEQLFEELE----IKSISDLYRIKKEDL------LKLNRFGEKKAQNLIDAIESS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +   L  FI++LGI +VG + +  L K + +  N  +            +  L+ V  +G
Sbjct: 501 KECDLPSFIYALGIPNVGKKTSTDLCKKFKTLDNLKKA----------KFEELVSVEDIG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           DI+AQ++++F+ +   + +++ LL        + E+   +    K +V TG+L    R++
Sbjct: 551 DIVAQSVLDFFNDETILKSIDELLSLGVTPKFKEEEIKENIFNGKTVVVTGSLSSFSRNE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +E +  LGA V+  +S+KTD ++VG +PGSK EKA QL +KI++EE F  ++
Sbjct: 611 IKEKLQSLGAKVAGSVSKKTDYVLVGKDPGSKYEKALQLNIKIISEEDFKNMI 663


>gi|86151833|ref|ZP_01070047.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841462|gb|EAQ58710.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 647

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 204/704 (28%), Positives = 346/704 (49%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYD L R                  + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDVLIRELRVFEEQN---KDEISKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP   ++   E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G  + +      +
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSD 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ ++       ++  Y+E+ ++R   P  +DG+V +VD+ +L ++LG
Sbjct: 229 VMQFIRELGFLKDDFIKLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +                 + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +           I TL+       +  E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HK----------KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                +   + +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KEWHKQSFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +   N   ++   K ++  I + E      I  K  V TGTL +  R + +  + +LG  
Sbjct: 547 RV--NRTRIDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSR-PRDEFKALIEKLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD ++ G+  GSKL KA++L VK ++E  F  L+++
Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE 647


>gi|210134818|ref|YP_002301257.1| NAD-dependent DNA ligase LigA [Helicobacter pylori P12]
 gi|254781345|sp|B6JLJ9|DNLJ_HELP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|210132786|gb|ACJ07777.1| DNA ligase [Helicobacter pylori P12]
          Length = 656

 Score =  443 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 217/709 (30%), Positives = 346/709 (48%), Gaps = 61/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY   + I+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDESIVSDAVYDELYQELKAYEEKNPNDIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G        K  H +   SL+ ++N  +L+ ++ RI + +      +  F   PK+D
Sbjct: 60  QKVGATTTTPFSKNPHLMRMWSLDDVFNQSELQAWLQRILKVY-----PNASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y  GK V A  RG+G  GE V+   + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYHHGKLVSATTRGNGLEGELVTNNAKHIANIPHF--IAYDGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 EDFEALNKERLEANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E  +QK+
Sbjct: 232 KECLDFIVSLGFGAIQYLSLNKNHQEIEESYHTLIKEREGFFALLDGMVIVVNELGIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA++  ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAMVNRATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  +   R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIVNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LA+Y L+    ++                + +   G  +A ++V 
Sbjct: 502 NALGIEHIGKGASKTLARYGLNVLEKSEA-------------EFLEMEGFGVEMAHSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    + + ++  SS   NK +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQKSSSVFNNKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LGA +S+ +S KTD +IVG+NPGSKL  A++ GV ++NEE+ L  L++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENPGSKLALAKKHGVSVLNEEELLKRLKE 654


>gi|261839558|gb|ACX99323.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 52]
          Length = 657

 Score =  443 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 224/710 (31%), Positives = 352/710 (49%), Gaps = 61/710 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY    PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK D
Sbjct: 60  QKVGATTPNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAY-----PSASFVCSPKFD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVSATTRGNGLEGELVSANAKHIANIPHA--IAYNGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +     +  I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFNSIQYLSLNKNYQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L+    ++                + +   G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    + + ++  SS   +K +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQESSSVFSHKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            LGA +S+ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++ 
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEE 655


>gi|208434535|ref|YP_002266201.1| DNA ligase [Helicobacter pylori G27]
 gi|254781346|sp|B5Z6Y6|DNLJ_HELPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|208432464|gb|ACI27335.1| DNA ligase [Helicobacter pylori G27]
          Length = 658

 Score =  443 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 219/709 (30%), Positives = 347/709 (48%), Gaps = 61/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE       ++     YY   + I+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIAYLNTLSHHYYNLDESIVSDAVYDELYQELKAYEEKNPNDIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI      K   S  F   PK+D
Sbjct: 60  QKVGATATNSFNKNPHLMRMWSLDDVFNQSELQAWLQRI-----LKTYPSASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE V+   + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVSATTRGNGLEGELVTNNAKHIANIPHF--IAYDGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 EDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLNLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+I  ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMINRATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + D+V+V R+G+VIPK++  +   R    Q    P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDKVVVIRSGDVIPKIIKPLETYRDGSQQKIMRPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIVNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L+    ++                + +   G  + +++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMVRSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L + ++P    +   ++  SS   NK +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFELLNPKNSDMAEEKQESSSVFNNKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LGA +++ +S KTD +IVG+N GSKL  A++ GV ++NEE+ L  L++
Sbjct: 606 NLGAKITSSVSAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKK 654


>gi|308061946|gb|ADO03834.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Cuz20]
          Length = 656

 Score =  443 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 220/711 (30%), Positives = 353/711 (49%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY     I+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDSIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGATTPNSFNKNPHLMRMWSLDDVFNQNELQAWLQRILKAY-----PSASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHA--IAYNGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFPSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA++T ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAMVTKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LA+Y L+    ++                + +   G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLARYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    + + ++  SS   +K +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQESSSVFNHKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+N GSKL  A++ GV ++NEE+ L  L++++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKEFD 656


>gi|217033559|ref|ZP_03438988.1| hypothetical protein HP9810_905g78 [Helicobacter pylori 98-10]
 gi|216944084|gb|EEC23515.1| hypothetical protein HP9810_905g78 [Helicobacter pylori 98-10]
          Length = 656

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 224/711 (31%), Positives = 356/711 (50%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY    PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNGIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G   + S  K +H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGAITSNSFNKNSHLMRMWSLDDVFNQNELQAWLQRILKAY-----PSASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHA--IAYNGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L+    ++                + +   G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    + + ++  SS   +K +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQENSSAFSHKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656


>gi|207092489|ref|ZP_03240276.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_AG0C1]
          Length = 656

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 220/709 (31%), Positives = 349/709 (49%), Gaps = 61/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE       ++     YY    PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIAYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGAITTNSFNKNPHLMRMWSLDDVFNQNELQAWLQRILKAY-----PSASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE V+   + I  IP    +   E IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVSATTRGNGLEGELVTNNAKHIANIPHS--IAYNEEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 KDFDALNQERLDANEPLFANPRNAASGSLRQLDSNITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E  +QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELGIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEP+ I GA++T ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMVTKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LA+Y L+    ++                + +   G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLARYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    +   ++  SS   NK +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMTEEKQKSSSVFNNKTIVLTGTLSK-PRQEYAQTLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LGA +S+ +S KTD +I G+NPGSKL  A++ GV ++NEE+ L  L++
Sbjct: 606 NLGAKISSSVSAKTDFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKE 654


>gi|205355436|ref|ZP_03222207.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346670|gb|EDZ33302.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 647

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 211/704 (29%), Positives = 347/704 (49%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYDAL R   A              + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRAFEEQN---KDEISKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E ++N  +LR +  R              F +EPK DG 
Sbjct: 60  IAPIIQSEFKKIAHLKRMWSMEDVFNEGELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP   ++   E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G  + +      E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSMTKERNLKFYPWGVG-ENTLNFTKHSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ VR       ++  Y+E+  +R   P  +DG+V +VD+ +L ++LG
Sbjct: 229 VMQFIRELGFLKDDFVRLCANLDEVLKAYDELLVLREKKPMMMDGMVVRVDDLALCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +                 + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +           I TL+       +  E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HK----------KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                +   + +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KEWHKQSFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +       ++   K ++  I + E    S I  K  V TGTL +  R + +  + +LG  
Sbjct: 547 RVNHTR--IDEFYKLLNLKIEKLEIKSDSMIFGKTFVITGTLSR-PRDEFKALIEKLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD ++ G+  GSKL KA++L VK +NE  F  L+++
Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCINESAFNELVKE 647


>gi|317180385|dbj|BAJ58171.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F32]
          Length = 656

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 225/711 (31%), Positives = 354/711 (49%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY    PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDKLYQELKAYEEKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K +H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGAITPNSFNKNSHLMRMWSLDDVFNQNELQAWLQRILKAY-----PSASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHA--IAYNGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFNSIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L+    ++                + +   G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    I + ++  SS   +K +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDIAKEKQESSSVFSHKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L+ ++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKGFD 656


>gi|308182775|ref|YP_003926902.1| NAD-dependent DNA ligase LigA [Helicobacter pylori PeCan4]
 gi|308064960|gb|ADO06852.1| NAD-dependent DNA ligase LigA [Helicobacter pylori PeCan4]
          Length = 656

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 221/711 (31%), Positives = 350/711 (49%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY   + I+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDESIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGATTTNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAY-----PSASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHA--IAYNGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E  +QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELGIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEP+ I GA++T ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMVTKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  +   R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L+                   +  + +   G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVL-------------EKSEVEFLEMEGFGAEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    +   ++  SS   +K +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMTEEKQESSSVFNHKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656


>gi|257460489|ref|ZP_05625590.1| DNA ligase, NAD-dependent [Campylobacter gracilis RM3268]
 gi|257441820|gb|EEV16962.1| DNA ligase, NAD-dependent [Campylobacter gracilis RM3268]
          Length = 668

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 221/700 (31%), Positives = 348/700 (49%), Gaps = 60/700 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            E  S    ++     YY   +PI  D EYD L  + +      P+LA S     P  +I
Sbjct: 4   DEYRSAVDTLNAWARAYYTDDRPIASDEEYDELYSQAEKFEEQNPELALSY---SPTRRI 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG ++    K+ H     S+E I++  DL  ++ R  +       +   F +EPK DG  
Sbjct: 61  GGAISEGFSKLAHGAQMWSMEDIFDDADLLAWLARGEK-------SGAQFYVEPKFDGAS 113

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + YE G  + AA RGDG  GEDV+   RAI ++P  L +     IE+RGE  I+K+DF
Sbjct: 114 LNLTYEGGVLISAATRGDGLIGEDVTQNARAIKSVP--LQIPYAGRIEIRGETLIAKSDF 171

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEM 257
            ALNDE  A G   ++NPRNAA+G LR+L+      R L F   G+G    +      ++
Sbjct: 172 DALNDERAANGESLFSNPRNAAAGSLRQLDSAIVAKRKLKFIPWGVG-EHSLSFALHSQI 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           ++ +R LGF  +   R   +   I + Y  + S+R++    +DG+V +V+E S   Q+G 
Sbjct: 231 MEFVRSLGFLRDEFCRICKSASEIRAAYEALHSMRASKDLMLDGMVIRVNELSKCAQMGY 290

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             + PR+M+++KF   +  TRL +I++Q+GRTG +TPVA +  VNI GA ++NATLHN D
Sbjct: 291 TVKFPRFMVAYKFPAVEKVTRLREINLQVGRTGAVTPVAVVYSVNIDGANVSNATLHNFD 350

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I  L            +   D V + R+G+VIPK+  +    R       S P  CP+C
Sbjct: 351 EIARL-----------GLMKNDFVGIIRSGDVIPKITSVYKQRRDGTQSEISRPDRCPVC 399

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
             +++ +          A      L C A+ +  L +F S+   NIEGL    +   F+S
Sbjct: 400 GEKLLDEG---------ALIKCQNLDCKARVIGSLIYFCSKKCMNIEGLSDATITQLFES 450

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I    DI+ L  +         ++ GF D  ++NL  +IN  +N  LERFI SL
Sbjct: 451 ----GKISKIGDIYALGAQDL------ADLEGFADKKISNLLGAINASKNAPLERFIASL 500

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI H+G   AR +A  +                 +     ++R+   G+ +A+++ EF  
Sbjct: 501 GIEHIGEVAARKIAAAFG------------QDWLDASEDEILRLEGFGEAMARSLAEF-- 546

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
              N   +  L + ++P   +  + V S   ++ +V TGTL +  R + +  +  +GA V
Sbjct: 547 CKINREKILNLSEIIAPRAPQM-QTVKSAFTDRSVVITGTLSR-PRDEFKAKLLAMGAKV 604

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
              +S KTD ++ G   GSKL+KA+ LGV++++E +F  L
Sbjct: 605 QGSVSAKTDFVLAGAEAGSKLQKARSLGVRVIDESEFEAL 644


>gi|261838144|gb|ACX97910.1| DNA ligase [Helicobacter pylori 51]
          Length = 656

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 222/711 (31%), Positives = 355/711 (49%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY    PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDPIVSDALYDELYQELKAYEEKNPNGIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K +H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGAITTNSFNKNSHLMRMWSLDDVFNQSELQAWLQRILKAY-----PSASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHA--IAYNGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++Q++
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHALIREREGFFALLDGMVIVVNELNIQRE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEP+ I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPIEIAGAMITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LA+Y L+    ++                + +   G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLARYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    I + ++  SS   +K +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDIAKEKQESSSVFSHKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKHLKEFD 656


>gi|262276888|ref|ZP_06054681.1| DNA ligase, NAD-dependent [alpha proteobacterium HIMB114]
 gi|262223991|gb|EEY74450.1| DNA ligase, NAD-dependent [alpha proteobacterium HIMB114]
          Length = 672

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 244/705 (34%), Positives = 383/705 (54%), Gaps = 43/705 (6%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KE    + ++  ++  YY  + P I D+ YD LK++             SE      + I
Sbjct: 6   KEYQEKKNKLFEYNKFYYDKNSPKIDDATYDRLKKQLIFYEKTN---QISEKEKKVSDTI 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G   +    KV H+   LSLE  ++ ED+ +F  +I  +   K  +      EPKIDG  
Sbjct: 63  GFSPSKKFSKVKHAESMLSLENAFDQEDIFEFYKKINNYLNFKSSHREELFAEPKIDGIS 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
            +++Y  G  +    RGDG  GED++  +R I  +P+ L       + VRGEVYI K++F
Sbjct: 123 ASLKYVNGYLIQGLSRGDGQFGEDITENLRTIDDVPKRLKKFNSGELIVRGEVYIPKSEF 182

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
             ++D         +ANPRNAASG LR+ N        L FF +G    +      Q + 
Sbjct: 183 KNISD--------KFANPRNAASGSLRQKNATNTAKIPLRFFAYGTIFMNHNLQSKQSKF 234

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L  ++  GF +N           + + Y ++++ RS L YDIDG+VYKVD F LQ++LG 
Sbjct: 235 LDFLKLEGFKINPLGIIIKDEKDLFANYTKIENKRSELDYDIDGIVYKVDNFKLQQRLGN 294

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
              SPRW I+HKF+ ++  +++ +I+IQ+GRTG LTPVA++ P+NIGG +++NATLHNED
Sbjct: 295 LTNSPRWAIAHKFSAERGISKIKNIEIQVGRTGALTPVAKINPINIGGVIVSNATLHNED 354

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +DIR+GD ++V+RAG+VIP+VV++  ++R   ++ F FP  CP  
Sbjct: 355 EIER-----------KDIRIGDTIVVQRAGDVIPQVVEVDKSKRDKSSKKFIFPKKCPC- 402

Query: 438 QSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
               +++ N  T K  A  RC   G  C+    E++KH+VS+DA NIEGLGK+ ++ F+ 
Sbjct: 403 GFETIKEFNKLTKKYDAVRRCPDKGYECNLITKEKIKHYVSKDAMNIEGLGKKVVENFWD 462

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +++P DI+ L         KI  + G+G +S  NL  SINK + ISLE+FI+S
Sbjct: 463 ----LNLVKLPHDIYKLNFE------KISQLEGWGKISANNLKKSINKTKKISLEKFIYS 512

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGIRH+G E A+ LAK++ S + F + +       N+ +  L+ +  +G+    ++  F+
Sbjct: 513 LGIRHIGQENAKILAKFFQSIKIFKKLVFE----KNNLFKDLLELDGIGETQINSLRNFF 568

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            N  N    E L+K +S      +     +  NK  +FTG ++K+ R +A++ V   G  
Sbjct: 569 SNNTNKKVFEELIKNLSILDFIIQ--SKGKFINKTFMFTGGMEKMSRSEAKQIVENEGGK 626

Query: 677 VSAILSRKTDIIIVGD-NPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           V   LS+K D ++ GD  P   K+ +A+ LG KI+ E+ +  L+ 
Sbjct: 627 VLGSLSKKLDYLVAGDSKPTLKKINQAKDLGTKILKEKDWYKLIN 671


>gi|109947386|ref|YP_664614.1| NAD-dependent DNA ligase LigA [Helicobacter acinonychis str.
           Sheeba]
 gi|123362647|sp|Q17XL1|DNLJ_HELAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|109714607|emb|CAJ99615.1| DNA ligase [Helicobacter acinonychis str. Sheeba]
          Length = 654

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 223/709 (31%), Positives = 349/709 (49%), Gaps = 61/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY   +PI+ D+ YD L +   A     P   ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDEPIVSDAVYDELYQELKAYEEKNPSQIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G        K  H     SL+ ++N  +L+ ++ RI      K   S  F   PK+D
Sbjct: 60  QKVGATALNQFNKNPHLTRMWSLDDVFNHNELQAWLQRI-----LKAYPSASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+KGK + A  RG+G  GE V+   + +  I     +   E IE+RGEV ISK
Sbjct: 115 GVSLNLLYQKGKLMKATTRGNGLEGELVTTNAKHVANISHT--IPYNEEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN+E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 EDFNALNEERLNANEPLFANPRNAASGSLRQLDSKITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I + Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIKHLSLNKNHQEIEANYHTLIQERERFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQCKIIRPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L CSA+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCSARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY              +          + +   G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKY-------------GLYVLEKSEDEFLEMEGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   +++L   ++P    I   ++  SS   +K +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIQSLFDLLNPKNSDIIEEKQESSSIFSHKTIVLTGTLSK-PRQEYAQILE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LGA +S+ +S KTD +IVG+N GSKL  AQ+ GV I+NEE+ L  L++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLSLAQKHGVNILNEEELLKYLKE 654


>gi|104780921|ref|YP_607419.1| NAD-dependent DNA ligase LigA [Pseudomonas entomophila L48]
 gi|122985912|sp|Q1ICK0|DNLJ_PSEE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|95109908|emb|CAK14613.1| NAD-dependent DNA ligase [Pseudomonas entomophila L48]
          Length = 784

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 219/652 (33%), Positives = 347/652 (53%), Gaps = 52/652 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   + +L  E+  H+  YY   +P + D+EYD L     A+    P L  +   + P  
Sbjct: 3   AESRIHALRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPQLVTA---DSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTL 130
           ++GG    +  +V H +P LSL   +  +DLR F  R+         +      ++ ++ 
Sbjct: 60  RVGGAALAAFSQVRHEVPMLSLGNAFEEDDLRDFDRRVVEGLDLPGGDLFAAQAAVDYSC 119

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189
           EPK+DG  +++ Y  G+ V  A RGDG +GED+S  +R +  IP  L     P ++EVRG
Sbjct: 120 EPKLDGLAVSLLYRDGQLVQGATRGDGTTGEDISTNVRTVRNIPLKLQGEGWPAVLEVRG 179

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EVY+SK  F  LN      G K +ANPRNAA+G LR+L+     +R L F  +G+G+ SE
Sbjct: 180 EVYMSKAGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSE 239

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            F      +L+K++  G P++  +R A      ++YY ++ + R+ LPY+IDG+V+KV+ 
Sbjct: 240 PFGDSHIGILEKLKTWGLPISRELRHAAGIEECLAYYRDIGARRNDLPYEIDGVVFKVNS 299

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q++LG RAR PRW I+HKF   +  T +LD++ Q+GRTG +TPVARL+PV + G ++
Sbjct: 300 LASQRELGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVMV 359

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L            +R+GD V+++RAG+VIP+V+ ++++ R  +A+P 
Sbjct: 360 SNATLHNMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLDRRPENARPV 408

Query: 429 SFPSFCPICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             P+ CP+C S+      V R    +T    A +RC G L+C+AQ  + + H+VSR A +
Sbjct: 409 EVPTECPVCGSQVERTQLVKRSKGKETISEGAVYRCVGRLSCAAQLKQAIIHYVSRRAMD 468

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GLG++ ++           IR PAD++ L+  Q         + GF +VS   L ++I
Sbjct: 469 IDGLGEKSVEQLVDE----GLIRSPADLYKLEFEQVV------VLEGFAEVSSRKLLEAI 518

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              +  SL RFI++LGI  VG E A+ LA+   S       +  +          L  +P
Sbjct: 519 EASKRPSLARFIYALGIPDVGEETAKVLARSLGSLARVQVALPQV----------LTYLP 568

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENK 650
            +G  +A  I  F+++  N   +  LL              E   S+ +   
Sbjct: 569 DIGLEVAHEIHNFFEDTHNREVIAQLLASGMQLQEEGELGAEFAASTTLAGM 620



 Score =  171 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 81/214 (37%), Gaps = 16/214 (7%)

Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575
               +   I  +L  G               + +L   +  L I  VG   A  L     
Sbjct: 583 EDTHNREVIAQLLASGMQLQEEGELGAEFAASTTLAGMLAKLDIPSVGPTGAEKLVDKLG 642

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN----ICAVEALLKE 631
           +                D   +L          A+ + EF+++  N          LL  
Sbjct: 643 TLDKIIAA------DGIDLRQALNT------KQAEGVREFFRDEANQLLARAIEAQLLDF 690

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                          +  +  V TGTL+++ R  A+E + +LGA V+  +S KT  ++ G
Sbjct: 691 GMHWSCEKRSAEGLPLAGQTWVLTGTLERMSRDVAKEQLERLGAKVAGSVSGKTHCVVAG 750

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
              GSKL KA +LGVK+++EEQF+  + +   TL
Sbjct: 751 PGAGSKLAKANELGVKVLDEEQFVAFMAEQGITL 784


>gi|152984776|ref|YP_001349158.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PA7]
 gi|190359272|sp|A6V7X3|DNLJ_PSEA7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|150959934|gb|ABR81959.1| DNA ligase, NAD-dependent [Pseudomonas aeruginosa PA7]
          Length = 794

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 219/650 (33%), Positives = 334/650 (51%), Gaps = 52/650 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
             + A + ++ L  E+  H+  YY   +P I D+EYD L R   A+    P L     P+
Sbjct: 3   DTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEHPQLL---TPD 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--------N 124
            P  ++ G    +  +V H IP LSL   +  +DL  F  R+                  
Sbjct: 60  SPTQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGA 119

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPE 183
            + ++ EPK+DG  +++ YE G+ V  A RGDG +GED+++ +R I  +P  L     P+
Sbjct: 120 EVEYSCEPKLDGLAVSLLYENGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPD 179

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
           I+EVRGEV++S+  F ALN + +  G K +ANPRNAA+G LR+L+     +R L F  +G
Sbjct: 180 ILEVRGEVFMSRAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYG 239

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G+ S      Q  +L+  R  G P++  +R          YY+++   R  L Y+IDG+
Sbjct: 240 FGRVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGV 299

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V+KV+  + Q++LG RAR PRW I+HKF  ++  T LL ++ Q+GRTG +TPVARL+PV 
Sbjct: 300 VFKVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQ 359

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++NATLHN D +  L            +R+GD V+++RAG+VIP+V+ +++  R 
Sbjct: 360 VAGVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRP 408

Query: 423 PDAQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
            DAQP   P  CP+C S V       R    ++    A +RC G L+C AQ  + + HFV
Sbjct: 409 ADAQPIEVPEHCPVCGSAVERTQLVRRSKGRESLSEGAIYRCVGRLSCQAQLKQAIIHFV 468

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR A +I+GLG + ++           +  PAD++TL   Q         + GF ++S  
Sbjct: 469 SRRAMDIDGLGDKIVEQLVDR----GLVASPADLYTLTYDQVF------ELEGFAELSTN 518

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL  +I   R  SL RFIF+LGI  VG E A+ LA+   S +   + +  +         
Sbjct: 519 NLLAAIADSRTPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEV--------- 569

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL--KEVSPSIGRHEKNVS 644
            L  +P VG  +A  I  F+ +  N   +  L   +         E    
Sbjct: 570 -LTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDAEHGVQLQEEGEVAAE 618



 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 57/199 (28%), Positives = 89/199 (44%), Gaps = 14/199 (7%)

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
            G         +       SL  FI  L I  + A  A  LA  + S     +       
Sbjct: 605 HGVQLQEEGEVAAEFAACASLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRA------ 658

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS- 645
               DWL L +V  + +  A+++ +F   P N+    A+EA L+E         K V   
Sbjct: 659 ----DWLDLRQVERLPERAAKSLRDFLDEPANVQRALAIEAQLREFGMHWQSERKAVEGL 714

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +  +  V TGTL+ + R  A+E +  LGA V+  +S +T  ++ G   GSKL KA +LG
Sbjct: 715 PLAGQTWVLTGTLEAMSRDVAKEKLEGLGAKVAGSVSARTHCVVAGPGAGSKLAKANELG 774

Query: 706 VKIMNEEQFLFLLQQYNTT 724
           +K+++E+  L LL +Y   
Sbjct: 775 LKVLDEDGLLKLLDEYGVA 793


>gi|297379814|gb|ADI34701.1| DNA ligase, NAD-dependent [Helicobacter pylori v225d]
          Length = 656

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 222/711 (31%), Positives = 353/711 (49%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY    PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGATTPNSFNKNPHLMRMWSLDDVFNQNELQAWLQRILKAY-----PSASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVSATTRGNGLEGELVSANAKHIANIPHA--IAYNGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L+    ++                + +   G  + +++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMVRSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    + + ++  SS   +K +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQESSSVFNHKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+N GSKL  A++ GV ++NEE+ L  L++++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKEFD 656


>gi|121612203|ref|YP_001000287.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005239|ref|ZP_02270997.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|166215572|sp|A1VYU6|DNLJ_CAMJJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|87250057|gb|EAQ73015.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 647

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 203/704 (28%), Positives = 347/704 (49%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYD L R                  + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDVLIRELRVFEEQN---KDEISKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP   ++   E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G  + +      E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ ++       ++  Y+E+ ++R   P  +DG+V ++D+ +L ++LG
Sbjct: 229 VMQFIRELGFLKDDFIKLCANLDEVLKAYDELLALREKKPMMMDGMVVRIDDLALCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +  + R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKDRREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +                 + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +           I TL+       +  E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HK----------KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                +   + +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KEWHKQSFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +       ++   K ++  I + E      I  K  V TGTL +  R + +  + +LG  
Sbjct: 547 RVNHVR--IDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSR-PRDEFKALIEKLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS+ +S+KTD ++ G+  GSKL KA++L VK ++E  F  L+++
Sbjct: 604 VSSSVSKKTDYVLFGEEAGSKLIKAKELEVKCIDESAFNELVKE 647


>gi|153853203|ref|ZP_01994612.1| hypothetical protein DORLON_00597 [Dorea longicatena DSM 13814]
 gi|149753989|gb|EDM63920.1| hypothetical protein DORLON_00597 [Dorea longicatena DSM 13814]
          Length = 692

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 189/719 (26%), Positives = 308/719 (42%), Gaps = 64/719 (8%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +++SI    K + +L ++++ +   YY    P++ D+EYD L  +   +      +    
Sbjct: 25  DSMSI----KRIKNLVKQLNEYRHAYYNQDAPLVSDAEYDRLFDKLKKLEEQTGFILS-- 78

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             N P   +G      L KVTH  P LSLEK   I +L  F+              + F 
Sbjct: 79  --NSPTQTVGYYPVSELAKVTHPTPLLSLEKTKLISELLDFMK----------GQEVLFM 126

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
              K+DG    + YE GK + A+ RGDG  GED++  I A   +P  L++   E + + G
Sbjct: 127 --LKLDGLTTKLIYEDGKLIQASTRGDGEVGEDITHNIPAFLNVP--LTIPHKERLVITG 182

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E +I  NDF  L D +     KPY N RN ASG +R L+P +   R + F    + +  E
Sbjct: 183 ESFIPTNDFERLKDTLRDGNGKPYKNGRNFASGSVRSLDPKNCIGRCVRFLPFNVLEGME 242

Query: 249 IFAKGQYEMLQKMRCLG-----FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                     +            P  +      +      +  E+ S  + L   IDG+V
Sbjct: 243 DVPFPDSRACKLEGLTHLGFGYCPFFSISGTGLSREYAEKFIQELVSTAANLHLPIDGIV 302

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
              D  S  K  G+     +  +++KF      T L +I+    R G + PV   + V I
Sbjct: 303 MIFDSLSYSKSCGKTGHHYKDGLAYKFENDTYETVLREIEWTPTRFGEIAPVGIFDTVEI 362

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ A+LHN  +IK L+           +  G R+LV +   +IP + D +   R+ 
Sbjct: 363 DGCDVSRASLHNLTFIKNLE-----------LVPGCRILVSKRNMIIPHIEDNLDRGRYT 411

Query: 424 DAQPFSFPSFCPICQSRVV-RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           D      P  CP C S+          G+ V    C     C +Q   R  HF S+ A N
Sbjct: 412 D----ITPPVCPCCGSKTRTYSRKTSDGRTVETLHCNNPQ-CDSQITRRFVHFASKKAMN 466

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGL +  L+ F         +    DI+ L+  ++    +I  + G+G+ S   L++SI
Sbjct: 467 IEGLSEATLEKFLN----LGYLHSFQDIYHLEEHRE----EIVALDGYGEKSFDRLWESI 518

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRV 601
           N  R  S  R++ S+ I  +G   +R L   +  +   F Q                 ++
Sbjct: 519 NASRRTSFVRYLVSMDIPMIGRTKSRILDTVFSGNLTAFEQAAVGDY--------DFTQL 570

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQ 659
              G I+   I  ++ +  N+   + L  E +    + E      ++     +V TG L+
Sbjct: 571 EDFGKILNHNIHSWFADEANLDLWKNLQNEFTFEQRKEEPIMTKENKFTGCTIVATGKLE 630

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              R    + + +LGA   + +++KTD +I G+  GSKL KAQ LG+ I+ E +FL ++
Sbjct: 631 HFTRDGINDKILELGAKPGSSVTKKTDYLICGEKAGSKLAKAQSLGIPILTEAEFLEMI 689


>gi|187734527|ref|YP_001876639.1| DNA ligase, NAD-dependent [Akkermansia muciniphila ATCC BAA-835]
 gi|254781249|sp|B2UL69|DNLJ_AKKM8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|187424579|gb|ACD03858.1| DNA ligase, NAD-dependent [Akkermansia muciniphila ATCC BAA-835]
          Length = 794

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 218/780 (27%), Positives = 367/780 (47%), Gaps = 104/780 (13%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            + A + +  L  E+  H+  YY+ ++P I D+EYDAL    + +  A P+L    DP+ 
Sbjct: 42  EDPAHRRIDYLRSELRRHNRLYYEQAEPEISDAEYDALFLELEKLEKAHPEL---SDPDS 98

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWN-------IEDLRKFITRIYRFWQKKDDNSI 126
           P  ++GG       ++ H++P LS++ I+         E+L +F  ++ R  Q     ++
Sbjct: 99  PTRRVGGAPLQGFNQIRHAVPMLSIDDIFEQRDAPVPDEELAEFYHKLSRALQ---TENV 155

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
             ++EPKIDG  ++I Y  GK  YAA RGDG  G+DV+A +R I ++P  L    P ++E
Sbjct: 156 PVSVEPKIDGVALSIMYRNGKLAYAATRGDGDVGDDVTANVRTIRSVPLTLPPGAPPVLE 215

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245
           VRGEV++    F  LN+E  A G   +ANPRNA +G L++L+P     R L F  HGLG 
Sbjct: 216 VRGEVFMPNEAFAKLNEERDADGLPAFANPRNATAGTLKQLDPRQVAARPLAFLAHGLGA 275

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 +   +    +R  G P N  V   ++         ++  +R TLPY  DG V K
Sbjct: 276 YEGPELRDAKDFWNMLRHCGIPCNEPVYYTDSLESTRQAVRDIDRLRHTLPYGTDGAVIK 335

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           +   + ++ LG  AR+PRW  ++KF  +Q  T LL+I +Q+GRTG+LTPVA L+PV + G
Sbjct: 336 ISSTATREALGATARAPRWAAAYKFPPEQKETTLLNIVVQVGRTGVLTPVAELQPVLLSG 395

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           + +  ATLHN+D I             +D+R+GD VLV++AGE+IP V+ + +++R  DA
Sbjct: 396 STVARATLHNQDEIDR-----------KDVRIGDTVLVEKAGEIIPAVLKVNLSKRPQDA 444

Query: 426 QPFSFPSF----CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
           +P+S        CP C + ++++          A RCT    C AQ +  + HF SR A 
Sbjct: 445 RPYSILEATKGLCPACGNPIMKEEGK------VAWRCTNF-TCPAQAVTGITHFCSRSAL 497

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT--KIENILGFGDVSVTNLY 539
           ++E +G    +    S           D+F+L   Q  +      E    +G+ +     
Sbjct: 498 DVESIGSSVAEALRSS----GLASSALDLFSLMPDQLANLNLGTPEEPRRYGEKNARKAL 553

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA------------------ 581
           D++   R + LER++ + GI  VG  +A++LA  +   ++ A                  
Sbjct: 554 DALQNARGLPLERWLIAFGIPLVGEVVAKALADTHPDLKHVADSPYLRDIVRLDELVEQA 613

Query: 582 ----------QEINNIIAHNNDDWLS-----LIRVP-----------------------L 603
                     ++     A + +         +  +                         
Sbjct: 614 AKTNPNTRENKKAVKEGALSAEAVQERHQELMEEIDRLTAPYLATGYLRKNTAKFSYGSE 673

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-----EKNVSSEIENKKLVFTGTL 658
           +G   A+++  F+ +      ++ L +       +       +  +  +  K  V TGTL
Sbjct: 674 IGVAAAKSLRSFFASAAGNHTMDVLHRLGINPQSQSYRASLLEIPAGSLSGKTFVITGTL 733

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
               R   ++ +   G   +  +S+ T  ++ G+  GSK +KA +LGV +++EE F  ++
Sbjct: 734 SH-PRDYFEQLIASHGGKATGAISKSTSCLLAGNGGGSKRDKALKLGVPVISEEDFYKMI 792


>gi|308063596|gb|ADO05483.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Sat464]
          Length = 656

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 224/711 (31%), Positives = 352/711 (49%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY    PI+ D+ YD L +         P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKVYEEKNPNNIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI      K   S  F   PK+D
Sbjct: 60  QKVGAITTNSFNKNPHLMRMWSLDDVFNQNELQAWLQRI-----LKAYPSASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP    +   E IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHA--IAYNEEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+++      R L F   G+GK   +     
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQIDSEITKKRKLQFIPWGVGK-HSLNFSSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L+    ++                + +   G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    +   ++  SS   +K +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMTEEKQENSSVFNHKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656


>gi|148546832|ref|YP_001266934.1| NAD-dependent DNA ligase LigA [Pseudomonas putida F1]
 gi|190359274|sp|A5W0U0|DNLJ_PSEP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148510890|gb|ABQ77750.1| DNA ligase, NAD-dependent [Pseudomonas putida F1]
          Length = 776

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 223/646 (34%), Positives = 344/646 (53%), Gaps = 48/646 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   +  L  E+  H+  YY   +P + D+EYD L     A+    P L     P+ P  
Sbjct: 3   AETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG    +  +V H +P LSL   +   DLR+F  R+     +    ++ ++ EPK+DG
Sbjct: 60  RVGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQP--GAVDYSCEPKLDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             +++ Y  G+ V  A RGDG +GED+SA +R +  IP  L     P ++EVRGEVY+SK
Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSK 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G K +ANPRNAA+G LR+L+     +R L F  +G+G+ SE      
Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQLSESIGDSH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L++++  G P++  ++ A      ++YY ++   R++LPY+IDG+V+KV+  + Q++
Sbjct: 238 IGILEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRE 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T +LD++ Q+GRTG +TPVARL+PV + G  ++NATLH
Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            +R+GD V+++RAG+VIP+V+ +++  R  DA+P   PS C
Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPQDARPVEVPSEC 406

Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S+      V R    +T    A +RC G LAC AQ  + + H+VSR A +I+GLG+
Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++           I  PAD++ LQ  Q         + GF +VS   L D+I   +  
Sbjct: 467 KSVEQLVDE----GLIGSPADLYKLQFEQVVG------LEGFAEVSTQKLLDAIEASKRP 516

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL RFI++LGI  VG E A+ LA+   S     Q +  +          L  +P +G  +
Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQV----------LTYLPDIGLEV 566

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENK 650
           A  I  F+++  N   ++ LL              E   S+ +   
Sbjct: 567 AYEIHNFFEDEHNQKVIQQLLDSGMQLQDEGELAAEFAASTTLAGM 612



 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 92/255 (36%), Gaps = 19/255 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   ++  + +          D    +      F      + +   I+ +L  G   
Sbjct: 537 VLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF---EDEHNQKVIQQLLDSGMQL 593

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                 +     + +L   I  L I  VG   A  L     S                D 
Sbjct: 594 QDEGELAAEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDSLDKIIAA------DGIDL 647

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA----LLKEVSPSIGRHEKNVSSEIENK 650
             +L          A A+ EF+++  N          LL          +      +  +
Sbjct: 648 RQALAA------KQADAVREFFKDEANQKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQ 701

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             V TGTL+++ R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++
Sbjct: 702 TWVLTGTLERMSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLD 761

Query: 711 EEQFLFLLQQYNTTL 725
           E+ F+  L +    +
Sbjct: 762 EDAFVTFLAEQGIAV 776


>gi|254234624|ref|ZP_04927947.1| DNA ligase [Pseudomonas aeruginosa C3719]
 gi|126166555|gb|EAZ52066.1| DNA ligase [Pseudomonas aeruginosa C3719]
          Length = 794

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 220/650 (33%), Positives = 335/650 (51%), Gaps = 52/650 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
             + A + ++ L  E+  H+  YY   +P I D+EYD L R   A+   +P L     P+
Sbjct: 3   DTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLL---TPD 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--------N 124
            P  ++ G    +  +V H IP LSL   +  +DL  F  R+                  
Sbjct: 60  SPTQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGA 119

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPE 183
            + ++ EPK+DG  +++ YE+G+ V  A RGDG +GED+++ +R I  +P  L     PE
Sbjct: 120 EVEYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPE 179

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
           I+EVRGEV++SK  F ALN + +  G K +ANPRNAA+G LR+L+     +R L F  +G
Sbjct: 180 ILEVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYG 239

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G+ S      Q  +L+  R  G P++  +R          YY+++   R  L Y+IDG+
Sbjct: 240 FGQVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGV 299

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V+KV+  + Q++LG RAR PRW I+HKF  ++  T LL ++ Q+GRTG +TPVARL+PV 
Sbjct: 300 VFKVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQ 359

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++NATLHN D +  L            +R+GD V+++RAG+VIP+V+ +++  R 
Sbjct: 360 VAGVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRP 408

Query: 423 PDAQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
            DAQ    P  CP+C S V       R    ++    A +RC G L+C AQ  + + HFV
Sbjct: 409 ADAQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFV 468

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR A +I+GLG + ++           +  PAD++TL   Q         + GF ++S  
Sbjct: 469 SRRAMDIDGLGDKIVEQLVDR----GLVASPADLYTLTYEQVF------ELEGFAELSTN 518

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL  +I   R  SL RFIF+LGI  VG E A+ LA+   S +   + +  +         
Sbjct: 519 NLLAAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEV--------- 569

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL--KEVSPSIGRHEKNVS 644
            L  +P VG  +A  I  F+ +  N   +  L   +         E    
Sbjct: 570 -LTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDAEHGVQLQEEGEVAAE 618



 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 14/199 (7%)

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
            G         +       SL  FI  L I  + A  A  LA  + S     +       
Sbjct: 605 HGVQLQEEGEVAAEFAACASLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRA------ 658

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS- 645
               DWL L +V  + +  A+++ +F+  P N+    A+EA L+E         K V   
Sbjct: 659 ----DWLDLRQVERLPERAAKSLRDFFDEPANVQRALAIEAQLREFGMHWQSERKAVEGL 714

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +  +  V TGTL+ + R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LG
Sbjct: 715 PLAGQTWVLTGTLEAMSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELG 774

Query: 706 VKIMNEEQFLFLLQQYNTT 724
           VK+++E+  L L  ++   
Sbjct: 775 VKVLDEDGLLKLFDEHGVA 793


>gi|15596726|ref|NP_250220.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PAO1]
 gi|107100960|ref|ZP_01364878.1| hypothetical protein PaerPA_01001990 [Pseudomonas aeruginosa PACS2]
 gi|218892513|ref|YP_002441382.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa LESB58]
 gi|81541359|sp|Q9I3I4|DNLJ_PSEAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781394|sp|B7UVJ3|DNLJ_PSEA8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|9947487|gb|AAG04918.1|AE004581_5 DNA ligase [Pseudomonas aeruginosa PAO1]
 gi|218772741|emb|CAW28526.1| DNA ligase [Pseudomonas aeruginosa LESB58]
          Length = 794

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 220/650 (33%), Positives = 335/650 (51%), Gaps = 52/650 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
             + A + ++ L  E+  H+  YY   +P I D+EYD L R   A+   +P L     P+
Sbjct: 3   DTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLL---TPD 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--------N 124
            P  ++ G    +  +V H IP LSL   +  +DL  F  R+                  
Sbjct: 60  SPTQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGA 119

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPE 183
            + ++ EPK+DG  +++ YE+G+ V  A RGDG +GED+++ +R I  +P  L     PE
Sbjct: 120 EVEYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPE 179

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
           I+EVRGEV++SK  F ALN + +  G K +ANPRNAA+G LR+L+     +R L F  +G
Sbjct: 180 ILEVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYG 239

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G+ S      Q  +L+  R  G P++  +R          YY+++   R  L Y+IDG+
Sbjct: 240 FGQVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGV 299

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V+KV+  + Q++LG RAR PRW I+HKF  ++  T LL ++ Q+GRTG +TPVARL+PV 
Sbjct: 300 VFKVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQ 359

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++NATLHN D +  L            +R+GD V+++RAG+VIP+V+ +++  R 
Sbjct: 360 VAGVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRP 408

Query: 423 PDAQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
            DAQ    P  CP+C S V       R    ++    A +RC G L+C AQ  + + HFV
Sbjct: 409 ADAQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFV 468

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR A +I+GLG + ++           +  PAD++TL   Q         + GF ++S  
Sbjct: 469 SRRAMDIDGLGDKIVEQLVDR----GLVASPADLYTLTYEQVF------ELEGFAELSTN 518

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL  +I   R  SL RFIF+LGI  VG E A+ LA+   S +   + +  +         
Sbjct: 519 NLLTAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEV--------- 569

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL--KEVSPSIGRHEKNVS 644
            L  +P VG  +A  I  F+ +  N   +  L   +         E    
Sbjct: 570 -LTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDAEHGVQLQEEGEVAAE 618



 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 14/199 (7%)

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
            G         +       SL  FI  L I  + A  A  LA  + S     +       
Sbjct: 605 HGVQLQEEGEVAAEFAACASLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRA------ 658

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS- 645
               DWL L +V  + +  A+++ +F+  P N+    A+EA L+E         K V   
Sbjct: 659 ----DWLDLRQVERLPERAAKSLRDFFDEPANVQRALAIEAQLREFGMHWQSERKAVEGL 714

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +  +  V TGTL+ + R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LG
Sbjct: 715 PLAGQTWVLTGTLEAMSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELG 774

Query: 706 VKIMNEEQFLFLLQQYNTT 724
           VK+++E+  L L  ++   
Sbjct: 775 VKVLDEDGLLKLFDEHGVA 793


>gi|317010835|gb|ADU84582.1| NAD-dependent DNA ligase LigA [Helicobacter pylori SouthAfrica7]
          Length = 657

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 220/712 (30%), Positives = 352/712 (49%), Gaps = 60/712 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY   +PI+ D+ YD L +   A     P   ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDEPIVSDAVYDELYQELKAYEEENPSYIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G        K  H +   SL+ ++N ++L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGATTPNPFNKNPHLMRMWSLDDVFNYDELQTWLQRILKAY-----PSASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE V+   + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVTTNAKHITNIPHA--IAYNGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 EDFDALNKERLDANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E + QK+
Sbjct: 232 KECLDFIVSLGFSAIKHLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNTQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIMRPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+++     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEAK----LIVNALDLYALKLEDLI------QLDKFKMKKAQNLLDAIQKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L+    ++                + +   G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           FY +  N   +++L   ++P       ++  SS   +K +V TGTL K  R +  + +  
Sbjct: 549 FYAS--NQEFIQSLFDLLNPKNSDIEEKQESSSIFSHKIIVLTGTLSK-PRQEYAQILEN 605

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           LGA +S+ +S KTD +IVG+N GSKL  A++ GV ++NEE+ L  L++ ++ 
Sbjct: 606 LGAKISSSVSAKTDFLIVGENAGSKLSLAKKHGVSVLNEEELLKYLKELDSN 657


>gi|86153540|ref|ZP_01071744.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843266|gb|EAQ60477.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 647

 Score =  440 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 206/704 (29%), Positives = 345/704 (49%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYDAL R                  + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELSVFEEQN---KDEISKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPIIQSEFKKIAHLRRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK    A RGDG  GED++  +  I  IP   ++   E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLASGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G  + +      E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ VR       ++  Y+E+ ++R   P  +DG+V +VD+ +L ++LG
Sbjct: 229 VMQFIRELGFLKDDFVRLCTNLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +                 + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +           I TL+       +  E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HK----------KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                +   + +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KEWHKQSFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +       ++   K ++  I + E      I  K  V TGTL +  R + +  + +LG  
Sbjct: 547 RVNHTR--IDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSR-PRDEFKALIEKLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD ++ G+  GSKL KA++L VK ++E  F  L+++
Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE 647


>gi|283954134|ref|ZP_06371659.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 414]
 gi|283794413|gb|EFC33157.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 414]
          Length = 647

 Score =  440 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 207/704 (29%), Positives = 347/704 (49%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYDAL R   A      D       + P  K
Sbjct: 3   KEEYLEKVALANSWMRAYYEKDEPLASDEEYDALIRELRAFEEQNKDEILK---DSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E ++   +LR +  R          +   F +EPK DG 
Sbjct: 60  IAPTVQSEFKKIAHLKRMWSMEDVFGESELRAWAKRAK--------SEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP   ++   E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G  + +      E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFSKHSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ V+       ++  Y E+ ++R   P  +DG+V +VDE +L K+LG
Sbjct: 229 VMQFIRELGFLKDDFVKLCANLDEVLKAYEELLALREKKPMMMDGMVVRVDELALCKELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVIVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +                 + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +           I TL+       +  E + GF +  + NL ++I + R   L  FI +
Sbjct: 449 HK----------KITTLESIFYLKFSDFEGLEGFKEKKINNLLNAIEQARECELFCFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                +   + +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KDWHKQSFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +       ++   K ++  + + E    S I  K  V TGTL +  R + +  + +LG  
Sbjct: 547 RVNHIR--IDEFYKLLNLKVEKLEVKSDSAIFGKTFVITGTLSR-PRDEFKALIEKLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           V+  +S+K+D ++ G+  GSKL KA++LGV  ++E  F  L+++
Sbjct: 604 VNGSVSKKSDYVLFGEEAGSKLSKAKELGVNCIDESAFNELIKE 647


>gi|283955998|ref|ZP_06373487.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792474|gb|EFC31254.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 1336]
          Length = 647

 Score =  440 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 207/704 (29%), Positives = 345/704 (49%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYDAL R                  + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFEEQN---KDEISKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPIIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP   ++   E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G  + +      E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ VR       ++  Y+E+ ++R   P  +DG+V +VD+  L ++LG
Sbjct: 229 VMQFIRELGFLKDDFVRLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLELCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R         P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEILRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +                 + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +           I TL+       +  E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HK----------KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                +   + +   +   G+ +A ++ EF 
Sbjct: 499 LGIDHIGEVAAKKLSLSFN------------KEWHKQSFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +       ++   K ++  I + E    S I  K  V TGTL +  R + +  + +LG  
Sbjct: 547 RVNHTR--IDEFYKLLNLKIEKLEIKSDSVIFGKTFVITGTLSR-PRDEFKALIEKLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD ++ G+  GSKL KA++L VK ++E  F  L+++
Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE 647


>gi|170781460|ref|YP_001709792.1| NAD-dependent DNA ligase LigA [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|190359244|sp|B0RGA7|DNLJ_CLAMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169156028|emb|CAQ01163.1| DNA ligase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 847

 Score =  440 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 212/794 (26%), Positives = 345/794 (43%), Gaps = 115/794 (14%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
            +E A   +  L  EI  H D YY  +   + D+EYDAL+R   AI  A P L      +
Sbjct: 22  DLEAASARVDELRAEIERHRDAYYGETGGTVSDAEYDALERELRAIEDAHPTL---RSQD 78

Query: 73  GPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P   +GG    +    VTH+   LSL+ +++ E+L ++  ++ R   +     + +  E
Sbjct: 79  SPTQTVGGRAETTLFAPVTHAERMLSLDNVFSEEELAEWAAKVERDAGR---GRVRYLSE 135

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
            KIDG  I +RYE G  V AA RGDG  GEDV+  +  + T+P  L+ +  P ++EVRGE
Sbjct: 136 LKIDGLAINLRYEHGVLVTAATRGDGVVGEDVTQNVLTMGTVPERLAGSGHPPLVEVRGE 195

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN----------PTDITRYLNFFV 240
           ++    +F  LN   + VG + +ANPRNAA+G LR+                 R L   V
Sbjct: 196 IFFPVAEFDELNARQLEVGERVFANPRNAAAGSLRQKEEGKSPARLELMHARIRRLRMLV 255

Query: 241 HGLGKTS------EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           HG+G         +     Q E+   +   G P++   R  +    +  +     + R+ 
Sbjct: 256 HGIGAWPVRELERDAHVSAQSEVYGLLEAWGLPISTHFRVFDDIAEVAGFVRRQGADRAA 315

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + IDG+V KVD+  L ++LG  +R+PRW  ++K+  ++ +T LLDI + +GRTG  TP
Sbjct: 316 VEHQIDGIVVKVDDLGLHEELGATSRAPRWATAYKYPPEEVNTTLLDIVVSVGRTGRATP 375

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A +E V + G+ +  ATLHN+  +K            + + +GD V++++AG+VIP+V+
Sbjct: 376 FAVMEKVEVAGSEVRQATLHNQQVVK-----------AKGVLIGDTVVLRKAGDVIPEVL 424

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +V  R      F  P+ CP CQ+ +         +     RC    +C AQ   R++H
Sbjct: 425 GPVVELRTGKEHEFVMPTLCPECQTPLK-----PAKEGDIDLRCPNARSCPAQVRGRVEH 479

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDP------------------------------AFSI 504
             SR A +IEGLG+       +  +P                                 +
Sbjct: 480 VASRGALDIEGLGEVAAAALTQPLEPEDPPLETEAGLFELTMADLVPITVVVRDAETGMV 539

Query: 505 R-----------IPADIFTLQRRQ--QTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +            P     + +R           +       S   L +++ K +   L 
Sbjct: 540 KVDEKTGEAKRVTPFRRKRVLKRDGAFDPAEPWGDEASVPSKSAEVLLENLEKAKTQDLW 599

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R + +L IRHVG   AR+LA ++ S                     L  V  VG IIA A
Sbjct: 600 RILVALSIRHVGPVAARALAGWFGSLDVIRAA----------SREELAAVDGVGGIIADA 649

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGR--------------HEKNVSSEIENKKLVFTGT 657
           ++++++   +   V    K    +                                 TG+
Sbjct: 650 LLDWFEVDWHREIVARWEKAGVVTAVPGHPGPGAAAAAGGVLAGLAVVA--------TGS 701

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L+   R  A E +   G    + +S+KT  +  G   GSKL KA+ LGV+I++  +F  L
Sbjct: 702 LEGYTREGALEAIMAAGGKAGSSVSKKTHYVAAGPGAGSKLGKAEALGVRIIDAAEFRLL 761

Query: 718 LQQYNTTLRIHDDD 731
           ++Q    + + + D
Sbjct: 762 VEQGPDAIALPEAD 775


>gi|148925946|ref|ZP_01809633.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145844932|gb|EDK22036.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 647

 Score =  440 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 209/704 (29%), Positives = 347/704 (49%), Gaps = 60/704 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYDAL R                  + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELSVFEEQN---KDEISKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPIIQSEFKKIAHLRRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP   ++   E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G  + +      E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ VR       ++  Y+E+ ++R   P  +DG+V +VD+ +L ++LG
Sbjct: 229 VMQFIRELGFLKDDFVRLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +                 + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +           I TL+       +  E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HK----------KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                +   + +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KEWHKQSFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +       ++   K ++  I + E    S I  K  V TGTL +  R + +  + +LG  
Sbjct: 547 RVNHTR--IDEFYKLLNLKIEKLEIKSDSMIFGKTFVITGTLSR-PRDEFKALIEKLGGK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           VS  +S+KTD ++ G+  GSKL KA++L VK +NE  F  L+++
Sbjct: 604 VSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCINESAFNELVKE 647


>gi|167034833|ref|YP_001670064.1| NAD-dependent DNA ligase LigA [Pseudomonas putida GB-1]
 gi|190359275|sp|B0KPX3|DNLJ_PSEPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166861321|gb|ABY99728.1| DNA ligase, NAD-dependent [Pseudomonas putida GB-1]
          Length = 776

 Score =  440 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 224/646 (34%), Positives = 344/646 (53%), Gaps = 48/646 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   +  L  E+  H+  YY   +P + D+EYD L     A+    P L     P+ P  
Sbjct: 3   AETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GGE   +  +V H +P LSL   +   DLR+F  R+     +    ++ ++ +PK+DG
Sbjct: 60  RVGGEALSAFSQVRHEVPMLSLGNAFEETDLREFGRRVVEGLDQP--GAVDYSCKPKLDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             +++ Y  G+ V  A RGDG +GED+SA +R +  IP  L     P ++EVRGEVY+SK
Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGEGWPAVLEVRGEVYMSK 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G K +ANPRNAA+G LR+L+     +R L F  +G+G+ SE      
Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSESIGDSH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L++++  G P++  +R A      ++YY ++   R++LPY+IDG+V+KV+  + Q++
Sbjct: 238 IGVLEQLKAWGMPISRELRHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNNLAAQRE 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T +LD++ Q+GRTG +TPVARL+PV + G  ++NATLH
Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            +R+GD V+++RAG+VIP+V+ +++  R  DA+P   PS C
Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPDDARPVEVPSAC 406

Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S+      V R    +T    A +RC G LAC AQ  + + H+VSR A +I+GLG+
Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++           I  PAD++ L   Q         + GF +VS   L D+I   +  
Sbjct: 467 KSVEQLVDE----GLIGSPADLYKLAFEQIVG------LEGFAEVSSKKLLDAIEASKRP 516

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL RFI++LGI  VG E A+ LA+   S     Q +  +          L  +P +G  +
Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQV----------LTYLPDIGLEV 566

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENK 650
           A  I  F+++  N   +E LL              E   S+ +   
Sbjct: 567 AYEIHNFFEDEHNQKVIEQLLASGMKLQDEGELAAEFAASTTLAGM 612



 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 93/255 (36%), Gaps = 19/255 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   ++  + +          D    +      F      + +   IE +L  G   
Sbjct: 537 VLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF---EDEHNQKVIEQLLASGMKL 593

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                 +     + +L   I  L I  VG   A  L     S +              D 
Sbjct: 594 QDEGELAAEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDSLEKIIAA------DGIDL 647

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA----LLKEVSPSIGRHEKNVSSEIENK 650
             +L          A A+ EF+++  N          LL          +      +  +
Sbjct: 648 RQALAA------KQADAVREFFKDEANQKLARDIEAQLLAFGMHWSCEKKVAEGLPLAGQ 701

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             V TGTL+++ R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++
Sbjct: 702 TWVLTGTLERMSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVKVLD 761

Query: 711 EEQFLFLLQQYNTTL 725
           E+ F+  L +    +
Sbjct: 762 EDAFVTFLAEQGIVV 776


>gi|317181928|dbj|BAJ59712.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F57]
          Length = 656

 Score =  440 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 224/711 (31%), Positives = 353/711 (49%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY    PI+ D+ YD L +   A     P+  +S   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQS---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGAITPNSFNKNPHLMRMWSLDDVFNQNELQTWLQRILKAY-----PSASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VS   + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVSATTRGNGLEGELVSTNAKHIANIPHA--IAYNGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFNSIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKIC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L+    ++                + +   G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    + + ++  SS   +K +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAKEKQESSSVFSHKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKHLKEFD 656


>gi|332673586|gb|AEE70403.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 83]
          Length = 656

 Score =  440 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 223/711 (31%), Positives = 353/711 (49%), Gaps = 61/711 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY    PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K +H +   SL+ ++N  +L+ ++ RI + +      +  F   PK+D
Sbjct: 60  QKVGAITPNSFNKNSHLMRMWSLDDVFNQNELQAWLQRILKAY-----PNASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP    +   E IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKHIANIPHA--IAYNEEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRR-LNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRN ASG LR+  +     R L F   G+GK   +     
Sbjct: 173 KDFDALNKERLNANEPLFANPRNTASGSLRQLGSKITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSSIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LAKY L+    ++                + +   G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLAKYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    + + ++  SS   NK +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMTKEKQKSSSVFNNKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            LGA +S+ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L+ ++
Sbjct: 606 NLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKGFD 656


>gi|26990965|ref|NP_746390.1| NAD-dependent DNA ligase LigA [Pseudomonas putida KT2440]
 gi|81439923|sp|Q88F25|DNLJ_PSEPK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|24985989|gb|AAN69854.1|AE016624_5 DNA ligase, NAD-dependent [Pseudomonas putida KT2440]
          Length = 776

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 222/646 (34%), Positives = 343/646 (53%), Gaps = 48/646 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   +  L  E+  H+  YY   +P + D+EYD L     A+    P L     P+ P  
Sbjct: 3   AETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG    +  +V H +P LSL   +   DLR+F  R+     +    ++ ++ EPK+DG
Sbjct: 60  RVGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQP--GAVDYSCEPKLDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             +++ Y  G+ V  A RGDG +GED+SA +R +  IP  L     P ++EVRGEVY+SK
Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSK 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G K +ANPRNAA+G LR+L+     +R L F  +G+G+ SE      
Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSESIGDSH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L++++  G P++  ++ A      ++YY ++   R++LPY+IDG+V+KV+  + Q++
Sbjct: 238 IGILEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRE 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T +LD++ Q+GRTG +TPVARL+PV + G  ++NATLH
Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            +R+GD V+++RAG+VIP+V+ +++  R   A+P   PS C
Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPQGARPVEVPSAC 406

Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S+      V R    +T    A +RC G LAC AQ  + + H+VSR A +I+GLG+
Sbjct: 407 PVCGSQVERTRLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++           I  PAD++ LQ  Q         + GF +VS   L D+I   +  
Sbjct: 467 KSVEQLVDE----GLIGSPADLYKLQFEQVVG------LEGFAEVSTQKLLDAIEASKRP 516

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL RFI++LGI  VG E A+ LA+   S     Q +  +          L  +P +G  +
Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQV----------LTYLPDIGLEV 566

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENK 650
           A  I  F+++  N   ++ LL              E   S+ +   
Sbjct: 567 AYEIHNFFEDEHNQKVIQQLLDSGMQLQDEGELAAEFAASTTLAGM 612



 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 92/255 (36%), Gaps = 19/255 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   ++  + +          D    +      F      + +   I+ +L  G   
Sbjct: 537 VLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF---EDEHNQKVIQQLLDSGMQL 593

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                 +     + +L   I  L I  VG   A  L     S                D 
Sbjct: 594 QDEGELAAEFAASTTLAGMIAKLDIASVGPTGAEKLVARLDSLDKIIAA------DGIDL 647

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA----LLKEVSPSIGRHEKNVSSEIENK 650
             +L          A A+ EF+++  N          LL          +      +  +
Sbjct: 648 RQALAA------KQADAVREFFKDEANQKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQ 701

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             V TGTL+++ R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++
Sbjct: 702 TWVLTGTLERMSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLD 761

Query: 711 EEQFLFLLQQYNTTL 725
           E+ F+  L +    +
Sbjct: 762 EDAFVTFLAEQGIAV 776


>gi|315606212|ref|ZP_07881239.1| DNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315312100|gb|EFU60190.1| DNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 777

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 205/798 (25%), Positives = 349/798 (43%), Gaps = 113/798 (14%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           ++P+   + E  RK    L + I      YY    P I D++YD + R  + I   +P L
Sbjct: 1   MVPMSDPTFETTRKRYDELVRSIEEARAAYYDRDSPTISDADYDRMYRELEEIEERYPQL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
             +   + P   +GG ++ S  +V H    +SL+ ++++E+L  +  RI       D   
Sbjct: 61  RGA---DSPTMSVGGSVDSSFTEVRHLAQMMSLDDVFSLEELAGWEARISEATGIVDP-- 115

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
              T E K+DG  I + YE+G+ V AA RGDG+ GED++A  R I +IP+ L+  +P  I
Sbjct: 116 -PMTTEVKVDGLSINLLYEEGRLVRAATRGDGYVGEDITANARTIASIPQTLTGPVPRRI 174

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244
           EVRGEVY    DF A N+  +A G K + N RNAA+G LR+ +P +   R L    HG+G
Sbjct: 175 EVRGEVYFPVADFAAFNEARVAAGEKAFVNARNAAAGSLRQKDPAETAKRPLAMVAHGIG 234

Query: 245 KTS----EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
                        Q    +++R  G PV+   R       I     ++ + R +L ++ID
Sbjct: 235 FVEAGEGFAEPTTQQGWYEQLRDWGLPVSPYTRLLTGRKAIEERIEQIGAQRHSLDHEID 294

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K+++ +LQ+ LG  +R+PRW  ++KF  ++  TRLLDI +Q+GRTG +TP   +E 
Sbjct: 295 GVVVKINDLALQRSLGSTSRAPRWAAAYKFPPEEVHTRLLDIRVQVGRTGRVTPYGVMES 354

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G+ ++ ATLHN   +             + + +GD V++++AG+VIP++V  +++ 
Sbjct: 355 VLVAGSNVSRATLHNAQEVAR-----------KGVLIGDLVVLRKAGDVIPEIVAPVMDA 403

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R+   +PF  PS CP C + +V++      +     RC    AC AQ  ERL H  +R A
Sbjct: 404 RNGSERPFVMPSECPSCATPLVQE-----KEGDVDLRCPNKGACPAQITERLAHVGARSA 458

Query: 481 FNIEGLGKQQLDFFFKSEDP---------------------------------------- 500
            ++EGLG +      + E+                                         
Sbjct: 459 LDVEGLGDESALAMTQPENDRDEVAAALVAGRSVTLEDGTVLTLEGARELPHGEQITRAE 518

Query: 501 -------AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                  A  +   A +F L+          + +   G+ +           +     + 
Sbjct: 519 ALLPAPQAPVLTSEAVLFDLRAEDLRDVMVWKPVKNKGEKTGDWRQVRYFWTKAYKPRKL 578

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
                   V    ++         +    E++          L  + +  VG   A+A+ 
Sbjct: 579 RGQTVYEPVETSASKG-------TEKMLAELDKAKNQPLARVLVALSIRHVGPTAARALA 631

Query: 614 EFYQN--------------------------------PRNICAVEALLKEVSPSIGRHEK 641
           + +++                                  ++  +EA  +          +
Sbjct: 632 DAFRSMDALRAASLEELSAVEGVGEEIGRSLRDWFTVDWHLAVLEAWARAGVRMADEERE 691

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
            VS  +    +V +G +    R  A+E +T  G   +  +S+KT +++ G   GSK  KA
Sbjct: 692 AVSDVLAGLTIVVSGAMPGYDREGAKEAITSRGGKAAGSVSKKTSLVVAGPGAGSKAAKA 751

Query: 702 QQLGVKIMNEEQFLFLLQ 719
           + LGV ++ E+QF  LL+
Sbjct: 752 EALGVPVITEQQFADLLE 769


>gi|34558095|ref|NP_907910.1| NAD-dependent DNA ligase LigA [Wolinella succinogenes DSM 1740]
 gi|81653397|sp|Q7M8A0|DNLJ_WOLSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|34483813|emb|CAE10810.1| DNA LIGASE POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+] [Wolinella
           succinogenes]
          Length = 650

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 232/719 (32%), Positives = 357/719 (49%), Gaps = 81/719 (11%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ +Q  + +  L    +     YY    P+  D EYD L     A     P+      P
Sbjct: 1   MNPDQYSQAIERL----NAWAHAYYVLDAPLATDEEYDQLYHEALAFERQNPERIH---P 53

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  +IGG       K +H     SLE +++  +L+ +  R+Y+           F  +
Sbjct: 54  ASPTQRIGGAPLEGFQKASHLERMWSLEDVFDFGELKSWAERLYK-----QFPHATFVCD 108

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK DG  + + YE+G+ V AA RGDG  GEDV+   R IP+IP  LS+ + E IE+RGEV
Sbjct: 109 PKFDGASLNLLYEEGRLVRAATRGDGLIGEDVTQNARTIPSIP--LSIPLLERIEIRGEV 166

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            I K DF  L +E +     P+ANPRNAA+G LR+L+P     R L F   G+G      
Sbjct: 167 VIPKEDFEKLQEERLRENESPFANPRNAAAGSLRQLDPAITAKRKLRFIPWGVG-AHPFK 225

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +E+++ +   GF  +    + +  H I   Y  + S RST P  +DG+V +VDE +
Sbjct: 226 TGSFFEIMKSLESYGFIRSPERTRCHNIHEIERVYALLVSERSTHPVMLDGMVVRVDEIA 285

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q++LG   ++PR+  ++KF   +   RLL I +Q+GR+G++TPVA LEPV I GA+I+ 
Sbjct: 286 YQRELGYTIKAPRFACAYKFPAIEKKARLLSITLQVGRSGVVTPVANLEPVEIEGAMISR 345

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D IK L           D+R GD V + R+G+VIPK++    + R  + +P S 
Sbjct: 346 ATLHNFDEIKRL-----------DVREGDWVSLIRSGDVIPKIIQPFAHLRSGEEKPLSR 394

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S ++ +                 L+C A+    L HF S+ A NI+GLG++ 
Sbjct: 395 PTHCPECGSELLVEE---------VLIKCQNLSCPARIKNSLIHFASKKALNIDGLGEKI 445

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  F+    A  I+   D+F+L +        + ++ GF +    NL D+I   R   L
Sbjct: 446 IEQLFE----AGLIKEFEDLFSLTKE------SLLSLEGFKEKKAQNLLDAIQGVRGCDL 495

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI +LGI H+G   A+ L+  +             +A +  +  ++I +   G+ +AQ
Sbjct: 496 WRFINALGIEHIGEGAAKKLSHAFG------------LAFHLQNHEAIIGLEGFGEEMAQ 543

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +++EF +       +E LL  + P          S I  K  V TGTL    R    E +
Sbjct: 544 SLLEFCRVNHER--IEHLLGLIEPLAPIQLTPQDSPIAGKSFVITGTLSA-PREHFVELL 600

Query: 671 TQLGA----------VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           T LGA                    D ++ G++ GSKLEKA++LGV+ +NEE+   +L+
Sbjct: 601 TSLGAKVVSSVSKKS----------DFLLYGESAGSKLEKARELGVRCVNEEELGEILE 649


>gi|168186072|ref|ZP_02620707.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund]
 gi|169295952|gb|EDS78085.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund]
          Length = 664

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 198/713 (27%), Positives = 350/713 (49%), Gaps = 58/713 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  +  +  L +E++     YY    P + D +YD    +   +            P  
Sbjct: 1   MEDKKLLIYELVEELNKLAYEYYVLDNPSVSDKDYDKKYDKLVELEKE----TGLVLPYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIF 127
           P  ++G  +     K TH     SL K  +++++  +  +  +   + +         I 
Sbjct: 57  PTQRVGDVVLSKFNKYTHKGKLWSLGKAQSLKEVEDWHNKNVKVVNEYNLTHEDKLPPIK 116

Query: 128 FTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
           + +  K DG  I   Y E G  V AA RG G  GE+++A  + I TIP  +      +IE
Sbjct: 117 YIVTKKFDGLTINCTYNEDGILVTAATRGTGEIGEEITAQAKTIKTIPLKMDN--HAVIE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGK 245
           V GE  ++K  F   N   +     P  N RN A+G LR LN  +   R L+ F + +G 
Sbjct: 175 VHGEAIMTKEAFEEYNKVAV----VPLKNLRNGAAGALRNLNVKETARRNLSAFFYDIGY 230

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                 K   EML+ ++  G P+++   Q +T   I    N ++ IR  L YDIDG V  
Sbjct: 231 NEGTPFKTYSEMLKFIKEHGIPMDDYAEQCSTVEEIEKEINYIEEIRDKLNYDIDGAVIA 290

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+   ++ LG   + P+W +++KF  ++A+T+LL+++  +GR+G +TP A LEPV IGG
Sbjct: 291 VDDMRTRELLGYTVKFPKWALAYKFEAQEATTKLLEVEWNVGRSGRVTPTAILEPVEIGG 350

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +  ATL+N D I+            + +++G  V ++R+ +VIP+++ ++       A
Sbjct: 351 VTVKRATLNNMDDIER-----------KGVKLGSTVFLRRSNDVIPEIMGVVEES-LEGA 398

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +    P+ CP C S +V++           + C   L+C  Q ++ + HF SR+A NI G
Sbjct: 399 KDIKSPTTCPYCGSEIVQE--------GVHYFCENTLSCKPQLVKSIVHFGSREAMNIAG 450

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
             ++  +  F+  D    I+  +D++ +++           +  FG+    NL D+I   
Sbjct: 451 FSEKTAEQLFEELD----IKSISDLYRIKKEDL------LKLNRFGEKKAQNLIDAIENS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++  L  FI++LGI +VG + +  L K + +  N  +               L+ V  +G
Sbjct: 501 KDCDLPSFIYALGIPNVGKKTSTDLCKKFKTLDNLKEA----------KIEELVSVEDIG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           DI+AQ++++F+ +   + +++ LL        + E+   +    K +V TG+L    R++
Sbjct: 551 DIVAQSVLDFFNDDTILKSIDELLSLGVIPKFKEEEIEENIFNGKTVVVTGSLSSFSRNE 610

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +E +  LGA V+  +S+KTD ++VG +PGSK EKA QL +KI++E++F  ++
Sbjct: 611 IKEKLQSLGAKVAGSVSKKTDYVLVGKDPGSKYEKAVQLNIKIISEDEFKNMI 663


>gi|254239878|ref|ZP_04933200.1| DNA ligase [Pseudomonas aeruginosa 2192]
 gi|126193256|gb|EAZ57319.1| DNA ligase [Pseudomonas aeruginosa 2192]
          Length = 794

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 220/650 (33%), Positives = 334/650 (51%), Gaps = 52/650 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
             + A + ++ L  E+  H+  YY   +P I D+EYD L R   A+   +P L     P+
Sbjct: 3   DTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLL---TPD 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--------N 124
            P  ++ G    +  +V H IP LSL   +  +DL  F  R+                  
Sbjct: 60  SPTQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGA 119

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPE 183
            + ++ EPK+DG  +++ YE+G+ V  A RGDG +GED+++ +R I  +P  L     PE
Sbjct: 120 EVEYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPE 179

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
           I+EVRGEV++SK  F ALN + +  G K +ANPRNAA+G LR+L+     +R L F  +G
Sbjct: 180 ILEVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYG 239

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G+ S      Q  +L+  R  G P++  +R          YY+++   R  L Y+IDG+
Sbjct: 240 FGQVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGV 299

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V+KV+  + Q++LG RAR PRW I+HKF  ++  T LL ++ Q+GRTG +TPVARL+PV 
Sbjct: 300 VFKVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQ 359

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  + NATLHN D +  L            +R+GD V+++RAG+VIP+V+ +++  R 
Sbjct: 360 VAGVTVFNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRP 408

Query: 423 PDAQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
            DAQ    P  CP+C S V       R    ++    A +RC G L+C AQ  + + HFV
Sbjct: 409 ADAQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFV 468

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR A +I+GLG + ++           +  PAD++TL   Q         + GF ++S  
Sbjct: 469 SRRAMDIDGLGDKIVEQLVDR----GLVASPADLYTLTYEQVF------ELEGFAELSTN 518

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL  +I   R  SL RFIF+LGI  VG E A+ LA+   S +   + +  +         
Sbjct: 519 NLLTAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEV--------- 569

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL--KEVSPSIGRHEKNVS 644
            L  +P VG  +A  I  F+ +  N   +  L   +         E    
Sbjct: 570 -LTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDAEHGVQLQEEGEVAAE 618



 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 14/199 (7%)

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
            G         +       SL  FI  L I  + A  A  LA  + S     +       
Sbjct: 605 HGVQLQEEGEVAAEFAACASLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRA------ 658

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS- 645
               DWL L +V  + +  A+++ +F+  P N+    A+EA L+E         K V   
Sbjct: 659 ----DWLDLRQVERLPERAAKSLRDFFDEPANVQRALAIEAQLREFGMHWQSERKAVEGL 714

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +  +  V TGTL+ + R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LG
Sbjct: 715 PLAGQTWVLTGTLEAMSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELG 774

Query: 706 VKIMNEEQFLFLLQQYNTT 724
           VK+++E+  L L  ++   
Sbjct: 775 VKVLDEDGLLKLFDEHGVA 793


>gi|116049473|ref|YP_791724.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|122258581|sp|Q02K12|DNLJ_PSEAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|115584694|gb|ABJ10709.1| DNA ligase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 794

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 220/650 (33%), Positives = 335/650 (51%), Gaps = 52/650 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
             + A + ++ L  E+  H+  YY   +P I D+EYD L R   A+   +P L     P+
Sbjct: 3   DTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLL---TPD 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--------N 124
            P  ++ G    +  +V H IP LSL   +  +DL  F  R+                  
Sbjct: 60  SPTQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGA 119

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPE 183
            + ++ EPK+DG  +++ YE+G+ V  A RGDG +GED+++ +R I  +P  L     PE
Sbjct: 120 EVEYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPE 179

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
           I+EVRGEV++SK  F ALN + +  G K +ANPRNAA+G LR+L+     +R L F  +G
Sbjct: 180 ILEVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYG 239

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G+ S      Q  +L+  R  G P++  +R          YY+++   R  L Y+IDG+
Sbjct: 240 FGQVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGV 299

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V+KV+  + Q++LG RAR PRW I+HKF  ++  T LL ++ Q+GRTG +TPVARL+PV 
Sbjct: 300 VFKVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQ 359

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++NATLHN D +  L            +R+GD V+++RAG+VIP+V+ +++  R 
Sbjct: 360 VAGVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRP 408

Query: 423 PDAQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
            DAQ    P  CP+C S V       R    ++    A +RC G L+C AQ  + + HFV
Sbjct: 409 ADAQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFV 468

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR A +I+GLG + ++           +  PAD++TL   Q         + GF ++S  
Sbjct: 469 SRRAMDIDGLGDKIVEQLVDR----GLVASPADLYTLTYEQVF------ELEGFAELSTN 518

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL  +I   R  SL RFIF+LGI  VG E A+ LA+   S +   + +  +         
Sbjct: 519 NLLAAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEV--------- 569

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL--KEVSPSIGRHEKNVS 644
            L  +P VG  +A  I  F+ +  N   +  L   +         E    
Sbjct: 570 -LTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDAEHGVQLQEEGEVAAE 618



 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 14/199 (7%)

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
            G         +       SL  FI  L I  + A  A  LA  + S     +       
Sbjct: 605 HGVQLQEEGEVAAEFAACASLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRA------ 658

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS- 645
               DWL L +V  + +  A+++ +F+  P N+    A+EA L+E         K V   
Sbjct: 659 ----DWLDLRQVERLPERAAKSLRDFFDEPANVQRALAIEAQLREFGMHWQSERKAVEGL 714

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +  +  V TGTL+ + R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LG
Sbjct: 715 PLAGQTWVLTGTLEAMSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELG 774

Query: 706 VKIMNEEQFLFLLQQYNTT 724
           VK+++E+  L L  ++   
Sbjct: 775 VKVLDEDGLLKLFDEHGVA 793


>gi|296390104|ref|ZP_06879579.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PAb1]
          Length = 794

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 219/650 (33%), Positives = 335/650 (51%), Gaps = 52/650 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
             + A + ++ L  E+  H+  YY   +P I D+EYD L R   A+   +P L     P+
Sbjct: 3   DTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLL---TPD 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--------N 124
            P  ++ G    +  +V H IP LSL   +  +DL  F  R+                  
Sbjct: 60  SPTQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGA 119

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPE 183
            + ++ EPK+DG  +++ YE+G+ V  A RGDG +GED+++ +R I  +P  L     P+
Sbjct: 120 EVEYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPD 179

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
           I+EVRGEV++SK  F ALN + +  G K +ANPRNAA+G LR+L+     +R L F  +G
Sbjct: 180 ILEVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYG 239

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G+ S      Q  +L+  R  G P++  +R          YY+++   R  L Y+IDG+
Sbjct: 240 FGQVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGV 299

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V+KV+  + Q++LG RAR PRW I+HKF  ++  T LL ++ Q+GRTG +TPVARL+PV 
Sbjct: 300 VFKVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQ 359

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++NATLHN D +  L            +R+GD V+++RAG+VIP+V+ +++  R 
Sbjct: 360 VAGVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRP 408

Query: 423 PDAQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
            DAQ    P  CP+C S V       R    ++    A +RC G L+C AQ  + + HFV
Sbjct: 409 ADAQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFV 468

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR A +I+GLG + ++           +  PAD++TL   Q         + GF ++S  
Sbjct: 469 SRRAMDIDGLGDKIVEQLVDR----GLVASPADLYTLTYEQVF------ELEGFAELSTN 518

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL  +I   R  SL RFIF+LGI  VG E A+ LA+   S +   + +  +         
Sbjct: 519 NLLAAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEV--------- 569

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL--KEVSPSIGRHEKNVS 644
            L  +P VG  +A  I  F+ +  N   +  L   +         E    
Sbjct: 570 -LTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDAEHGVQLQEEGEVAAE 618



 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 14/199 (7%)

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
            G         +       SL  FI  L I  + A  A  LA  + S     +       
Sbjct: 605 HGVQLQEEGEVAAEFAACASLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRA------ 658

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS- 645
               DWL L +V  + +  A+++ +F+  P N+    A+EA L+E         K V   
Sbjct: 659 ----DWLDLRQVERLPERAAKSLRDFFDEPANVQRALAIEAQLREFGMHWQSERKAVEGL 714

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +  +  V TGTL+ + R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LG
Sbjct: 715 PLAGQTWVLTGTLEAMSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELG 774

Query: 706 VKIMNEEQFLFLLQQYNTT 724
           VK+++E+  L L  ++   
Sbjct: 775 VKVLDEDGLLKLFDEHGVA 793


>gi|313497885|gb|ADR59251.1| LigA [Pseudomonas putida BIRD-1]
          Length = 776

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 223/646 (34%), Positives = 344/646 (53%), Gaps = 48/646 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   +  L  E+  H+  YY   +P + D+EYD L     A+    P L     P+ P  
Sbjct: 3   AETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG    +  +V H +P LSL   +   DLR+F  R+     +    ++ ++ EPK+DG
Sbjct: 60  RVGGAAMAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQP--GAVDYSCEPKLDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             +++ Y  G+ V  A RGDG +GED+SA +R +  IP  L     P ++EVRGEVY+SK
Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSK 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G K +ANPRNAA+G LR+L+     +R L F  +G+G+ SE      
Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQLSESIGDSH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L++++  G P++  ++ A      ++YY ++   R++LPY+IDG+V+KV+  + Q++
Sbjct: 238 IGILEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRE 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T +LD++ Q+GRTG +TPVARL+PV + G  ++NATLH
Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            +R+GD V+++RAG+VIP+V+ +++  R  DA+P   PS C
Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPQDARPVEVPSEC 406

Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S+      V R    +T    A +RC G LAC AQ  + + H+VSR A +I+GLG+
Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++           I  PAD++ LQ  Q         + GF +VS   L D+I   +  
Sbjct: 467 KSVEQLVDE----GLIGSPADLYKLQFEQVVG------LEGFAEVSTQKLLDAIEASKRP 516

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL RFI++LGI  VG E A+ LA+   S     Q +  +          L  +P +G  +
Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQV----------LTYLPDIGLEV 566

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENK 650
           A  I  F+++  N   ++ LL              E   S+ +   
Sbjct: 567 AYEIHNFFEDEHNQKVIQQLLDSGMQLQDEGELAAEFAASTTLAGM 612



 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 92/255 (36%), Gaps = 19/255 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   ++  + +          D    +      F      + +   I+ +L  G   
Sbjct: 537 VLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF---EDEHNQKVIQQLLDSGMQL 593

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                 +     + +L   I  L I  VG   A  L     S                D 
Sbjct: 594 QDEGELAAEFAASTTLAGMIAKLDIASVGPTGAEKLVSKLDSLDKIIAA------DGIDL 647

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA----LLKEVSPSIGRHEKNVSSEIENK 650
             +L          A A+ EF+++  N          LL          +      +  +
Sbjct: 648 RQALAA------KQADAVREFFKDEANQKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQ 701

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             V TGTL+++ R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++
Sbjct: 702 TWVLTGTLERMSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLD 761

Query: 711 EEQFLFLLQQYNTTL 725
           E+ F+  L +    +
Sbjct: 762 EDAFVTFLAEQGIAV 776


>gi|313106533|ref|ZP_07792762.1| DNA ligase [Pseudomonas aeruginosa 39016]
 gi|310879264|gb|EFQ37858.1| DNA ligase [Pseudomonas aeruginosa 39016]
          Length = 794

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 220/650 (33%), Positives = 336/650 (51%), Gaps = 52/650 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
             + A + ++ L  E+  H+  YY   +P I D+EYD L R   A+   +P L     P+
Sbjct: 3   DTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLL---TPD 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--------N 124
            P  ++ G    +  +V H IP LSL   +  +DL  F  R+                  
Sbjct: 60  SPTQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGA 119

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPE 183
            + ++ EPK+DG  +++ YE+G+ V  A RGDG +GED+++ +R I  +P  L     PE
Sbjct: 120 EVEYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPE 179

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
           I+EVRGEV++SK  F ALN + +  G K +ANPRNAA+G LR+L+     +R L F  +G
Sbjct: 180 ILEVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYG 239

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
            G+ S   +  Q  +L+  R  G P++  +R          YY+++   R  L Y+IDG+
Sbjct: 240 FGQVSGTLSDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGV 299

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V+KV+  + Q++LG RAR PRW I+HKF  ++  T LL ++ Q+GRTG +TPVARL+PV 
Sbjct: 300 VFKVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQ 359

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++NATLHN D +  L            +R+GD V+++RAG+VIP+V+ +++  R 
Sbjct: 360 VAGVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRP 408

Query: 423 PDAQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
            DAQ    P  CP+C S V       R    ++    A +RC G L+C AQ  + + HFV
Sbjct: 409 ADAQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFV 468

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR A +I+GLG + ++           +  PAD++TL   Q         + GF ++S  
Sbjct: 469 SRRAMDIDGLGDKIVEQLVDR----GLVASPADLYTLTYEQVF------ELEGFAELSTN 518

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL  +I   R  SL RFIF+LGI  VG E A+ LA+   S +   + +  +         
Sbjct: 519 NLLAAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEV--------- 569

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL--KEVSPSIGRHEKNVS 644
            L  +P VG  +A  I  F+ +  N   +  L   +         E    
Sbjct: 570 -LTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDAEHGVQLQEEGEVAAE 618



 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 14/199 (7%)

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
            G         +       SL  FI  L I  + A  A  LA  + S     +       
Sbjct: 605 HGVQLQEEGEVAAEFAACASLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRA------ 658

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS- 645
               DWL L +V  + +  A+++ +F+  P N+    A+EA L+E         K V   
Sbjct: 659 ----DWLDLRQVERLPERAAKSLRDFFDEPANVQRALAIEAQLREFGMHWQSERKAVEGL 714

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +  +  V TGTL+ + R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LG
Sbjct: 715 PLAGQIWVLTGTLEAMSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELG 774

Query: 706 VKIMNEEQFLFLLQQYNTT 724
           VK+++E+  L L  ++   
Sbjct: 775 VKVLDEDGLLKLFDEHGVA 793


>gi|311086964|gb|ADP67044.1| DNA ligase (NAD+) [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
          Length = 678

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 222/712 (31%), Positives = 371/712 (52%), Gaps = 50/712 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + ++  L + +  ++  Y+  ++ II D+EYD L R+   +     +L  S   + P  K
Sbjct: 5   KDKIEKLRKILLKYEYFYHTLNQSIISDAEYDYLFRQLYELELKNKELIPS---DSPTQK 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  +     K+ H  P LSLE  +++     F  RI +     ++  + F  E K+DG 
Sbjct: 62  VGSHILQKFKKIKHFSPMLSLENTFDVNGYLNFKKRIKKSI--HNNEPLSFCCELKLDGV 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196
            I+I YE+G FV AA RGDG  GE++++  R I +IP  L   +IP+ +E+RGEV++ K+
Sbjct: 120 AISIIYEEGIFVRAATRGDGFEGENITSNARMIDSIPLKLKGIDIPKRLEIRGEVFMLKS 179

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT--SEIFAKG 253
           +F+ LN +      K ++NPRNAA+G LR ++P     R L F  HG      +      
Sbjct: 180 NFIKLNKKYKLNQNKYFSNPRNAAAGSLRHIDPNITAERKLIFSCHGCDFFVKTNKELTT 239

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+ L K    G PVN  +   ++   I+ +Y ++   R+ L +DIDG+V KV+   LQK
Sbjct: 240 HYQRLMKCLSWGIPVNKEIVICSSDIEIIQFYKKIAQKRNFLDFDIDGIVIKVNSLELQK 299

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           ++G   +SPRW I+ KF+ K+  T L D+  Q+GRTG++TPVA   PV I G +I+ A+L
Sbjct: 300 KIGSTTKSPRWAIAFKFSPKERITTLNDVKFQVGRTGVITPVAYFNPVYISGVMISKASL 359

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN++ I+ L           ++   D + + R+G+VIP+++++I   R  +A+   FPSF
Sbjct: 360 HNKNEIERL-----------NLHFNDTITICRSGDVIPRLLNVIEIRRCDNAKKIIFPSF 408

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C + ++ ++  K  +      C  GL C AQ+ + L HF S+ +  + GLG + ++ 
Sbjct: 409 CPVCNTELLENIEEKLIR------CHSGLTCDAQKKQALYHFFSKKSLYVVGLGPKIINE 462

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       ++ P D F L+            +   G      + +SI K +  +L+ F
Sbjct: 463 LVEK----GLVKNPIDFFYLKDIDLI------QLKNVGKRKSIKIINSIKKCKKTTLKCF 512

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGI  VG  +A  +A Y++                N + L L  +  VG II+  I 
Sbjct: 513 IYALGIPGVGEVVAGKIANYFIKLDKLM----------NSNILELNCISGVGKIISNNIF 562

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            ++    N   V  L+K+    +   E     +  +   NKK+V TG  +   R + +  
Sbjct: 563 NYFSTISNREMVVKLIKQAGIFLNDQEIHKINSEKTYFFNKKIVLTGVFKSFSRIELKTI 622

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +  LGA +S  +SRKTD +I G+N GSK  +A+ L VKI+N+E+   L++++
Sbjct: 623 LLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQEELNSLIRKF 674


>gi|257066474|ref|YP_003152730.1| NAD-dependent DNA ligase LigA [Anaerococcus prevotii DSM 20548]
 gi|256798354|gb|ACV29009.1| DNA ligase, NAD-dependent [Anaerococcus prevotii DSM 20548]
          Length = 666

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 179/711 (25%), Positives = 333/711 (46%), Gaps = 56/711 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             R+++  L ++I   +  YY   +P++ D EYD +      +             + P 
Sbjct: 2   DKREKIDKLIEKIENLNYHYYTLDEPLVSDGEYDQIYDELRKLEEE----TGYVRDDSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFT 129
             +GGE+     K  H    LS  K    E+L  +I R  R     + N       + + 
Sbjct: 58  QVVGGEILDKFEKHFHITKLLSQNKAQTHEELEAWIDRCNRLRDDYNINHDDKLAELEYI 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +E K DG  + + Y  G  V AA RG+G  GE++S  +R I +IP  +      ++E++G
Sbjct: 118 MEYKFDGLTVNLTYNNGNLVNAATRGNGIIGEEISPQVRTIRSIPNRIKE--KSLLEIQG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E  +  ++    N+E          N RNAA+G LR LN  +  +           T+ +
Sbjct: 176 EALMPLSELTRYNEE----NELQLKNARNAAAGALRNLNTKETAKRKLTAYFYSIPTNNL 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               + +ML+ ++  G  ++   ++ +    +++  + ++  R  +    DG+V K+++ 
Sbjct: 232 DFATEEDMLEFLKEQGLLIHPYHKKVHNLEEMLAELDFIEEERKNIDILTDGVVIKINDK 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+ LG   + PRW I++KF  ++ +T L ++   +GR+G +TP A L+PV   GA ++
Sbjct: 292 RTQEVLGSTNKFPRWSIAYKFEAEEYTTTLREVVWNVGRSGKVTPSAILDPVEFSGATVS 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATL+N D I             + +R+G +V ++R+ +VIP+++ ++        +   
Sbjct: 352 RATLNNYDDIIR-----------KKVRIGSKVFIRRSNDVIPEILGVVDEN-QEGTKEIE 399

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            PS CP C S +++              C   ++C  Q L R++HF SR+A +IEGL ++
Sbjct: 400 KPSKCPYCGSELIQ--------GNVHIICPNSISCKPQLLARMEHFTSRNAMDIEGLSEK 451

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +    +  D    I    DI+ L      +      +  FGD    NL ++I   + + 
Sbjct: 452 TIAQLMEELD----INEVDDIYDLSYDDLIN------LDRFGDKKTKNLLNAIEASKKVD 501

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L+ FI+++GI +VG   +R LA  + S+                    L  +  +G+I A
Sbjct: 502 LDNFIYAIGIPNVGERTSRDLANKFKSFDALRHA----------SLEELSDIDDIGEITA 551

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           Q I+E++++P    +++ LLK+          N S  + +   V TGT+   +R   ++ 
Sbjct: 552 QNIIEYFRDPNISKSIDNLLKKGIEISEVKADNNSDSLNDMTFVITGTIDNYKRDDIKKL 611

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +   GA V+  +S+ TD+++ G+  GSK +KA+ LG++I   ++    L++
Sbjct: 612 LESNGAKVTGSVSKNTDVVLAGEKSGSKKDKAKNLGIEIYENDKLYDFLKE 662


>gi|260773253|ref|ZP_05882169.1| DNA ligase [Vibrio metschnikovii CIP 69.14]
 gi|260612392|gb|EEX37595.1| DNA ligase [Vibrio metschnikovii CIP 69.14]
          Length = 591

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 222/629 (35%), Positives = 349/629 (55%), Gaps = 44/629 (6%)

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+  +   +L  F  RI             F  EPK+DG  +++ Y  G+   AA R
Sbjct: 1   MLSLDNAFADSELDSFFRRIGERVAATQHA--RFCCEPKLDGLAVSLLYIDGRLTQAATR 58

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           GDG +GE+++  +R I +IP  LS    P  IEVRGEV++ K  F  +N + +  G+K +
Sbjct: 59  GDGTTGENITENVRTIKSIPLKLSGTGWPSRIEVRGEVFMPKEGFERMNAQALKKGQKVF 118

Query: 214 ANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNG 271
            NPRNAA+G LR+L+      R L F+ + +G       +   Y+   +++  G PV+  
Sbjct: 119 VNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVEGAELSTSHYDRFLQLKSWGLPVSPE 178

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
            ++      +  YY  + + R+ LPY+IDG+V KVD+ +LQ++LG  AR+PRW I++KF 
Sbjct: 179 TQRVENAQQVKDYYQTIMAKRADLPYEIDGVVIKVDDIALQEKLGFVARAPRWAIAYKFP 238

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++  TRL +++ Q+GRTG +TPVA+LEP+ +GG  ++NATLHN D I+ L         
Sbjct: 239 AQEEMTRLNEVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHNADEIERL--------- 289

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
              + VGD V+++RAG+VIP++V +++  R  +AQP  FPS CP+CQS V R        
Sbjct: 290 --GVMVGDTVIIRRAGDVIPQIVSVVLERRPQEAQPIIFPSHCPVCQSDVERVEGE---- 343

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A  RCTGGL C AQ+ E LKHFVSR A +++GLG + ++   + E     +  PAD+F
Sbjct: 344 --AVARCTGGLVCQAQRKEALKHFVSRKAMDVDGLGDKVIEQLVERE----MVETPADLF 397

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L+        ++  +   G  S  N+  ++   +  +L RF+++LGIR VG   A +LA
Sbjct: 398 KLRA------GELTVLDRMGPKSAQNITQALINAKRTTLARFLYALGIREVGEATAMNLA 451

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           +++ + +  +Q               LI V  VG I+A  +  F+   +N   V+ L   
Sbjct: 452 QHFCTLEAISQA----------SIEQLIGVQDVGMIVASHVHAFFSQEKNQRVVQELRDL 501

Query: 632 VS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
               P I   +      +  K +V TG+L ++ R +A+  +  LGA V+  +S+ TD++ 
Sbjct: 502 GVTWPDIEPQDVAKPQPLAGKTVVLTGSLVQLSRTEAKAALQSLGAKVTGSVSKNTDMLF 561

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            G+  GSKL KAQ+LG++I +E+  L LL
Sbjct: 562 AGEAAGSKLVKAQELGIEIFSEQDLLDLL 590


>gi|325274411|ref|ZP_08140498.1| NAD-dependent DNA ligase LigA [Pseudomonas sp. TJI-51]
 gi|324100446|gb|EGB98205.1| NAD-dependent DNA ligase LigA [Pseudomonas sp. TJI-51]
          Length = 776

 Score =  438 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 222/646 (34%), Positives = 342/646 (52%), Gaps = 48/646 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   +  L  E+  H+  YY   +P + D+EYD L     A+    P L     P+ P  
Sbjct: 3   AETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG    +  +V H +P LSL   +   DLR+F  R+     +    ++ ++ EPK+DG
Sbjct: 60  RVGGAALSAFSQVRHEVPMLSLGNAFEEADLREFGRRVVDGLDQP--GAVDYSCEPKLDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             +++ Y  G  V  A RGDG +GED+SA +R +  IP  L     P ++EVRGEVY+SK
Sbjct: 118 LAVSLLYRDGLLVQGATRGDGTTGEDISANVRTVRNIPLKLHGEGWPAVLEVRGEVYMSK 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G K +ANPRNAA+G LR+L+     +R L F  +G+G+ S       
Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQLSASIGDSH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L++++  G P++  ++ A      + YY ++   R++LPY+IDG+V+KV+  + Q++
Sbjct: 238 IGILEQLKAWGLPISRELKHAAGIEECLDYYRDIGERRNSLPYEIDGVVFKVNSLAAQRE 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T +LD++ Q+GRTG +TPVARL+PV + G  ++NATLH
Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            +R+GD V+++RAG+VIP+V+ +++  R  DA+P + PS C
Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPDDARPVAVPSEC 406

Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S+      V R    +T    A +RC G LAC AQ  + + H+VSR A +I+GLG+
Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++           I  PAD++ LQ  Q         + GF +VS   L D+I   +  
Sbjct: 467 KSVEQLVDE----GLIGSPADLYKLQFEQVVG------LEGFAEVSTRKLLDAIEASKRP 516

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL RFI++LGI  VG E A+ LA+   S     Q +  +          L  +P +G  +
Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQV----------LTYLPDIGLEV 566

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENK 650
           A  I  F+++  N   ++ LL              E   S+ +   
Sbjct: 567 AYEIHNFFEDEHNQKVIQQLLDSGMHLQDEGELAAEFAASTSLAGM 612



 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 94/255 (36%), Gaps = 19/255 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   ++  + +          D    +      F      + +   I+ +L  G   
Sbjct: 537 VLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF---EDEHNQKVIQQLLDSGMHL 593

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                 +     + SL   I  L I  VG   A  L     S                D 
Sbjct: 594 QDEGELAAEFAASTSLAGMIAKLDIASVGPTGAEKLVAKLDSLDKIIAA------DGIDL 647

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICA---VE-ALLKEVSPSIGRHEKNVSSEIENK 650
             +L          A A+ EF+++  N      +E  LL          +      +  +
Sbjct: 648 RQALAA------KQADAVREFFKDEANQQLARAIEAQLLAFGMHWTSEKKVAEGLPLAGQ 701

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             V TGTL+++ R  A++ +  LGA V+  +S +T  ++ G   GSKL KA +LGVK+++
Sbjct: 702 TWVLTGTLERMSRDVAKDKLESLGAKVAGSVSGRTQCVVAGPGAGSKLAKASELGVKVLD 761

Query: 711 EEQFLFLLQQYNTTL 725
           EE F+  L     T+
Sbjct: 762 EEAFVAFLAGQGITI 776


>gi|219681449|ref|YP_002467834.1| DNA ligase (NAD+) [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|257471124|ref|ZP_05635123.1| DNA ligase (NAD+) [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|254781271|sp|B8D8M5|DNLJ_BUCA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219624292|gb|ACL30447.1| DNA ligase (NAD+) [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 675

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 222/709 (31%), Positives = 368/709 (51%), Gaps = 50/709 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + ++  L + +  ++  Y+  ++ II D+EYD L R+   +     +L  S   + P  K
Sbjct: 5   KDKIEKLRKILLKYEYFYHTLNQSIISDAEYDYLFRQLYELELKHKELIPS---DSPTQK 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  +     K+ H  P LSLE  +++     F  RI +     ++  + F  E K+DG 
Sbjct: 62  VGSHILQKFKKIKHFSPMLSLENTFDVNGYLNFKKRIKKSI--HNNEPLSFCCELKLDGV 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196
            I+I YE+G FV AA RGDG  GE++++  R I +IP  L   +IP+ +E+RGEV++ K+
Sbjct: 120 AISIIYEEGIFVRAATRGDGFEGENITSNARMIDSIPLKLKGIDIPKRLEIRGEVFMLKS 179

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT--SEIFAKG 253
           +F+ LN +      K ++NPRNAA+G LR ++P     R L F  HG      +      
Sbjct: 180 NFIKLNKKYKLNQNKYFSNPRNAAAGSLRHIDPNITAERKLIFSCHGCDFFVKTNKELTT 239

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+ L K    G PVN  +   ++   I+ +Y ++   R+ L +DIDG+V KV+   LQK
Sbjct: 240 HYQRLMKCLSWGIPVNKEIVICSSDIEIIQFYKKIAQKRNFLDFDIDGIVIKVNSLELQK 299

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           ++G   +SPRW I+ KF+ K+  T L D+  Q+GRTG++TPVA   PV I G +I+ A+L
Sbjct: 300 KIGSTTKSPRWAIAFKFSPKERITTLNDVKFQVGRTGVITPVAYFNPVYISGVMISKASL 359

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN++ I+ L           ++   D + + R+G+VIP+++++I   R  +A+   FPSF
Sbjct: 360 HNKNEIERL-----------NLHFNDTITICRSGDVIPRLLNVIEIRRCDNAKKIIFPSF 408

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C + ++ ++  K  +      C  GL C AQ+ + L HF S+ +  + GLG + ++ 
Sbjct: 409 CPVCNTELLENIEEKLIR------CHSGLTCDAQKKQALYHFFSKKSLYVVGLGPKIINE 462

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       ++ P D F L+            +   G      + +SI K +  +L+ F
Sbjct: 463 LVEK----GLVKNPIDFFYLKDIDLI------QLKNVGKRKSIKIINSIKKCKKTTLKCF 512

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGI  VG  +A  +A Y++                N + L L  +  VG II+  I 
Sbjct: 513 IYALGIPGVGEVVAGKIANYFIKLDKLM----------NSNILELNCISGVGKIISNNIF 562

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            ++    N   V  L+K+    +   E     +  +   NKK+V TG  +   R + +  
Sbjct: 563 NYFSTISNREMVVKLIKQAGIFLNDQEIHKINSEKTYFFNKKIVLTGVFKSFSRIELKTI 622

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  LGA +S  +SRKTD +I G+N GSK  +A+ L VKI+N+E+   L+
Sbjct: 623 LLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQEELNSLI 671


>gi|325479535|gb|EGC82631.1| DNA ligase (NAD+) [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 669

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 192/711 (27%), Positives = 344/711 (48%), Gaps = 56/711 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             R+E++ L +EI+  +  YY   +P++ D EYD +  R   +       +   + N P 
Sbjct: 2   DIREEINQLIEEINRLNYHYYTLDEPLVSDGEYDEIYDRLVKLEDK----SGYINENSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFT 129
            K+GGE+     K  H    LS +K    + L  +I R  R  +  ++        + F 
Sbjct: 58  QKVGGEVLEKFEKHFHITKLLSQDKAQTYDKLEDWINRANRLRRDYNNSHDDQLEKLTFI 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +E K DG  + + Y+ G  V AA RG+G  GE++SA +  I +IP+ +      ++E++G
Sbjct: 118 MEYKFDGLTVNLTYDDGALVNAATRGNGTVGEEISAQVNTIKSIPKRIEE--KSLLEIQG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E  +  ++    N+           N RNAA+G LR LNP +  +           T+ +
Sbjct: 176 EALMPLSELKKYNEN----NEVQLKNARNAAAGALRNLNPKETAKRNLTAYFYSIPTNNL 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
             K + EML+ ++  G   +   ++ N    I++    +K  R+TL    DG+V K+++ 
Sbjct: 232 DFKSEEEMLEFLKKQGLQTHPYHKKVNNLDDIIAELERIKEERTTLDILTDGVVIKINDK 291

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q+ LG   + PRW I++K+  ++ +T L ++   +GRTG +TP A LEPV+  G  +T
Sbjct: 292 KTQEVLGTTNKFPRWSIAYKYEAEEFTTTLKEVVWNVGRTGKVTPSAILEPVDFSGVTVT 351

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATL+N D I             + +++G +V ++R+ +VIP+++ ++  +  P      
Sbjct: 352 RATLNNYDDI-----------LRKKVKIGSKVFIRRSNDVIPEILGVVDED-QPGTLEIE 399

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C S +         +      C   ++C  Q L +++HF SR+A +IEGL ++
Sbjct: 400 KPKHCPYCGSEL--------IEGNVHIICPNSISCKPQLLAKMEHFASRNAMDIEGLSEK 451

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +     + D    I    DI+ L      +   + N+  FGD    NL ++I   + + 
Sbjct: 452 TISQLMDALD----INEIDDIYDL------TYDMLINLDRFGDKKTNNLLNAIEASKKVD 501

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L  FI+++GI +VG   +R LA  + S+    Q               L+ V  +G+I A
Sbjct: 502 LNNFIYAIGIPNVGERTSRDLANKFKSFDRLRQAKE----------EELVDVEDIGEITA 551

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           Q I+E++ +P    +++ LL++        E N S+ +E+   V TGT++  +R   +  
Sbjct: 552 QNIIEYFNDPNIKRSIDILLEKGIEISNPKEDNKSNGLEDMTFVITGTIENYKRDDIKNL 611

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + +    V+  +S+ TD ++ GD  GSK +KA  LG++I   ++    L++
Sbjct: 612 IEKNAGKVTGSVSKNTDYVLCGDKAGSKKDKALNLGIEIYEGDKLYEFLEK 662


>gi|317179023|dbj|BAJ56811.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F30]
          Length = 657

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 222/710 (31%), Positives = 351/710 (49%), Gaps = 61/710 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE     + ++     YY    PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIEYLNTLSHHYYNLDDPIVSDAIYDELYQELKAYEEKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGATTTNSFNKNPHLMRMWSLDDVFNQNELQAWLQRILKAY-----PSASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE VSA  + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVSANAKRIANIPHA--IAYNGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 KDFDALNKERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E ++QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEENYHALIREREGFFVLLDGMVIVVNELNIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEPV I GA+IT ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LA+Y L+    ++                + +   G  +A+++V 
Sbjct: 502 NALGIEHIGKGASKTLARYGLNVLEKSEA-------------EFLEMEGFGVEMARSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    + + ++  SS   +K +V TG L K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMTKEKQKSSSVFSHKTIVLTGMLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            LGA +S+ +S KTD +IVG+N GSKL  AQ+ GV ++NEE+ L  L++ 
Sbjct: 606 NLGAKISSSVSTKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEE 655


>gi|77458028|ref|YP_347533.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens Pf0-1]
 gi|123731132|sp|Q3KFB2|DNLJ_PSEPF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|77382031|gb|ABA73544.1| DNA ligase [Pseudomonas fluorescens Pf0-1]
          Length = 785

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 215/641 (33%), Positives = 334/641 (52%), Gaps = 48/641 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +  A+  +  L  E+  H+  Y+   +P I D+EYD L     A+  A P+L  S   + 
Sbjct: 1   MTAAKDRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAANPELITS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G     +  +V H +P LSL   +   D+R+F  R+         +      ++ 
Sbjct: 58  PTQRVGSVALTAFTQVRHEVPMLSLGNAFEETDMREFDRRVTEGLDLPAGDLFGGGAAVE 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y+ G  V  A RGDG +GED+S  +R +  IP  L     P  +E
Sbjct: 118 YSCEPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGTGWPATLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+      R L F  +G+G+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   +      LQ+++  G P+++ ++ A      + YY ++   R++L Y+IDG+V+K
Sbjct: 238 VSHDISDTHIGNLQQLKAWGMPISHELKLAKGIGECLDYYRDIGERRNSLAYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNSIADQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             + NATLHN D +  L            + +GD V+++RAG+VIP+VV +++  R  DA
Sbjct: 358 VTVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVMERRPEDA 406

Query: 426 QPFSFPSFCPICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S       V R    +T    A +RC G LAC AQ  + + HFVSR 
Sbjct: 407 RPVQIPESCPVCGSHVERTQLVKRSKGKETISEGAVYRCVGRLACGAQLKQAIIHFVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++           +  PAD++ L+            + GF +VS   L 
Sbjct: 467 AMDIEGLGDKSVEQLVDE----GLVSSPADLYALKFEDIVD------LEGFAEVSSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   +   L RFI++LGI  VG E A+ LA+   S +   Q +  +          L 
Sbjct: 517 AAIEDSKKPGLARFIYALGIPDVGEETAKVLARSLGSLERVQQALPQV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
            +P +G  +A  I  F+++  N   +  LL        + E
Sbjct: 567 YLPDIGLEVAHEIHSFFEDAHNRQVITELLGHGLQIQDQGE 607



 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 99/255 (38%), Gaps = 21/255 (8%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   ++E + +          D    +      F        +   I  +LG G   
Sbjct: 546 VLARSLGSLERVQQALPQVLTYLPDIGLEVAHEIHSFF---EDAHNRQVITELLGHGLQI 602

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +L  F+  L I  VG   A+ LA  + S +               D
Sbjct: 603 QDQGELGAEFAASTTLGGFLDKLHIPSVGPGGAQKLADKFESLEGVMNA----------D 652

Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNICAVEA----LLKEVSPSIGRHEKNVSSEIEN 649
           WL +   +P   +  A ++ EF+  P +    E     L           +      +  
Sbjct: 653 WLDMRQALP---EKQANSVREFFALPEHRQLAEDAEKQLRDFGMHWQSEKKVVEGLPLAG 709

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +  V TG ++ + R  A+E++  LGA V+  +S KT  ++ G   GSKL KA +LGVK+M
Sbjct: 710 ETWVLTGKVELMSRDVAKEHLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGVKVM 769

Query: 710 NEEQFLFLLQQYNTT 724
           +EE F+  L+ +  +
Sbjct: 770 DEEAFIAFLKGHGIS 784


>gi|222823679|ref|YP_002575253.1| DNA ligase, NAD-dependent [Campylobacter lari RM2100]
 gi|254781279|sp|B9KG17|DNLJ_CAMLR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222538901|gb|ACM64002.1| DNA ligase, NAD-dependent [Campylobacter lari RM2100]
          Length = 651

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 215/701 (30%), Positives = 343/701 (48%), Gaps = 60/701 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E     +        YY+  +P+  D EYD L R        +         + P   I
Sbjct: 4   QEYLEKVKLAKEWMRAYYEDDEPLASDEEYDKLIRELKEFEALY---KDKISKDSPTQNI 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
              +     K+THS    S+E +++  +LR +  R              F +EPK DG  
Sbjct: 61  APTIQSEFHKITHSAKMWSMEDVFDEAELRAWAKRAK--------CEFDFFIEPKFDGAS 112

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + YE GK +  A RGDG  GED++  ++ I  IP    +   + IE+RGEV I K DF
Sbjct: 113 LNLTYENGKLISGATRGDGEIGEDITLNVKEISNIP--KIIPYKDKIEIRGEVVILKEDF 170

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
             +N++    G   +ANPRN ASG LR+L+ +    R L F+  G+G  + +      E+
Sbjct: 171 EKINEKRAKDGLSLFANPRNGASGSLRQLDTSITKERNLKFYPWGVG-ENSLKFSKHSEV 229

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           ++ +R LGF  ++ V    T   ++  Y+E+   R   P  +DG+V +VD+    ++LG 
Sbjct: 230 MEFIRSLGFLKDDFVYCVKTLDEVLEKYHELLEKRDQKPMMMDGMVVRVDDLKKCQELGY 289

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             + P++M + KF   + +T LL +++Q+GR+G++TPVA LEPV + G ++ +ATLHN D
Sbjct: 290 TVKFPKFMAAFKFPALEKTTTLLGVNLQVGRSGVITPVAILEPVELDGVVVKSATLHNFD 349

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I  L            + +GD V V R+G+VIPK+  +    R       + PS CP C
Sbjct: 350 EITRL-----------GVMIGDSVSVIRSGDVIPKITKVFTQRRDGLESKITKPSLCPEC 398

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S ++ +          A      L C A+ +  + +FVS+   NI+GLG+  ++  FK 
Sbjct: 399 LSELLDEG---------AFLKCQNLDCKARLVNSIIYFVSKKCLNIDGLGENIVELLFKE 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I     IF L+           N+ GF +  + NL ++I   +  SL RFI +L
Sbjct: 450 ----GKITNIESIFFLKYDDF------LNLEGFKEKKINNLLNAIENAKKCSLSRFITAL 499

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI H+G   A+ LA+ +  +  F Q            + + + +   G+ +A+++ EF  
Sbjct: 500 GIEHIGEVAAKKLAQSFG-FDWFLQ-----------SYEAYVNLEGFGEQMAKSLQEF-- 545

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
              N   ++   + +     + E  ++  I NK  V TGTL K  R   +E +   GA V
Sbjct: 546 TKINHQRIKHFYEILHLEDEKKELALNENISNKTFVITGTLSK-SRDHFKELIESFGAKV 604

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           S+ +S+KTD ++ G   GSKLEKAQ LGVK +NE++F  LL
Sbjct: 605 SSSVSKKTDFVLYGSEAGSKLEKAQSLGVKCINEDEFNALL 645


>gi|254779395|ref|YP_003057500.1| NAD-dependent DNA ligase LigA [Helicobacter pylori B38]
 gi|254001306|emb|CAX29287.1| DNA ligase (NAD(+)) [Helicobacter pylori B38]
          Length = 656

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 213/709 (30%), Positives = 344/709 (48%), Gaps = 61/709 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE       ++     YY   + I+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIAYLNTLSHHYYNLDESIVSDAVYDELYQELKAYEEENPNDIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K  H +   SL+ ++N  +L+ ++ RI + +      S  F   PK+D
Sbjct: 60  QKVGAITTNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKVY-----PSASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y  GK + A  RG+G  GE V+   + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYHHGKLISATTRGNGLEGELVTNNAKHIANIPHF--IAYNGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 KDFDALNQERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  V+E  +QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVNELGIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEP+ I GA++  ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMVNRATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  +   R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           F+ +     I    D++ L+            +  F      NL D+I K +N  L R I
Sbjct: 452 FEEK----LIFNALDLYALKLEDLM------RLDKFKIKKAQNLLDAILKSKNPPLWRLI 501

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +LGI H+G   +++LA+Y L+    ++                + +   G  +A ++V 
Sbjct: 502 NALGIEHIGKGASKTLARYGLNVLEKSEA-------------EFLEMEGFGVEMAHSLVN 548

Query: 615 FYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           FY +  N   + +L   ++P    +   ++  SS   +K +V TGTL K  R +  + + 
Sbjct: 549 FYAS--NQEFIRSLFDLLNPKNSDMAEEKQKSSSVFSDKTIVLTGTLSK-PRQEYAQMLE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            LGA +++ +S KT+ +I G+NPGSKL  A++ GV ++NEE+ L  L++
Sbjct: 606 NLGAKIASSVSTKTNFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKK 654


>gi|302382738|ref|YP_003818561.1| DNA ligase, NAD-dependent [Brevundimonas subvibrioides ATCC 15264]
 gi|302193366|gb|ADL00938.1| DNA ligase, NAD-dependent [Brevundimonas subvibrioides ATCC 15264]
          Length = 777

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 236/737 (32%), Positives = 337/737 (45%), Gaps = 62/737 (8%)

Query: 41  PIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEK 100
           P + D++YDA+K R  AI   FP L RS   + P  K+G  ++    +V H +P LSL+ 
Sbjct: 42  PTVSDADYDAMKARNLAIETRFPALVRS---DSPSLKVGAPVSTQFTEVRHGVPMLSLDN 98

Query: 101 IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSG 160
            +   D+  F+ RI RF     D  + FT EPKIDG    +RYE G  V  A RGDG +G
Sbjct: 99  AFEAADVTDFVARIRRFLNLPADEVVAFTAEPKIDGLSANLRYEDGVLVQGATRGDGRAG 158

Query: 161 EDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNA 219
           ED++A ++ I  IP  L+    P  IEVRGEVY   + F A N E  A GR+ YANPRN 
Sbjct: 159 EDITANLKTIADIPHRLNGKGWPARIEVRGEVYAPNDAFAAFNAEAEAAGRRTYANPRNF 218

Query: 220 ASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTF 278
           A+G LR+++PT    R L FF +  G+TSE FA+ Q   L+     GFPVN    +    
Sbjct: 219 AAGSLRQIDPTVTAARPLRFFAYAWGETSEPFAETQAGALEAFEAWGFPVNPRSVRVEGS 278

Query: 279 HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTR 338
            G++  Y  +++ R+ L YDIDG+VYKVD    Q +LG  +RSPRW I+HKF  +QA+T 
Sbjct: 279 DGLIDVYRGLETDRAGLGYDIDGVVYKVDRLDWQTRLGFVSRSPRWAIAHKFPAQQATTV 338

Query: 339 LLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD---ASGKVMRGGRDI 395
           L  IDIQ+GRTG LTPVARL PV +GG ++ NATLHNED I   D       V++   D+
Sbjct: 339 LEGIDIQVGRTGSLTPVARLAPVTVGGVVVRNATLHNEDEIARKDVRIGDTVVLQRAGDV 398

Query: 396 RVGDRVLV--KRAGEVIPKVVDIIVNERHPDA----------------QPFSFPSFCPIC 437
                 +V  KR  + +P V          +A                            
Sbjct: 399 IPQIVSVVLDKRPADALPYVFPTHCPVCGSEAVREGDDVRRRCTGGLICSAQLIERLKHF 458

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL-GKQQLDFFFK 496
            SR   D+     K ++A    G +   A      +     DA   E   G+  +     
Sbjct: 459 VSRRAFDIEGLGEKQLSAFHDRGWIHEPADIFRLARDADKLDALRAEDGYGETSVRNLVA 518

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
             D    I +   IF L  R     T +     FGD +  +           S E    +
Sbjct: 519 GIDARRVISLERLIFGLGIRDIGDQTSLLLARHFGDWASFHAAAMEAASGIPSPEWTQLA 578

Query: 557 LGIRHVGAEIA-------------------RSLAKYYLSYQNFAQ--------------- 582
            G       ++                   + LA  +      A+               
Sbjct: 579 EGHGVSPRTLSVMAAATLSPADPWPEAPIDQKLALAFPGIAAPARRALGPLAVDWAGIVE 638

Query: 583 -EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
                     +     +  +  VG + A+A+ +F+  P N   V ALL E++        
Sbjct: 639 LARIAREDGPSMTLGEIAGIAGVGPVAARAVADFFHEPHNQAVVAALLAELTTVQDAERP 698

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
              + +  K +VFTG L++  R +A+     LGA VS  +S+KTD ++ G   GSKL  A
Sbjct: 699 KSDTAVTGKTVVFTGALERFTRDEAKARAESLGAKVSGSVSKKTDYLVAGPGAGSKLADA 758

Query: 702 QQLGVKIMNEEQFLFLL 718
           Q+ GV ++ E+++L L+
Sbjct: 759 QKHGVAVLTEDEWLALI 775


>gi|327480472|gb|AEA83782.1| NAD-dependent DNA ligase LigA [Pseudomonas stutzeri DSM 4166]
          Length = 791

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 218/641 (34%), Positives = 340/641 (53%), Gaps = 49/641 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S + A + ++ L  EI  H+  YY   +P + D+EYD L     A+    P+L     P 
Sbjct: 3   SAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELV---TPE 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSI 126
            P  ++GG    +  +V H +P LSL   +  +DL  F  R+             D  ++
Sbjct: 60  SPTQRVGGAALAAFGQVRHEVPMLSLGNAFEEQDLLDFDRRVREGLDLPAGDLFGDGAAV 119

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEII 185
            ++ EPK+DG  +++ YE G  V  A RGDG +GED+SA +R +  IP  L  +  P ++
Sbjct: 120 EYSCEPKLDGLAVSLLYENGHLVRGATRGDGSTGEDISANVRTVRNIPLKLHGSGWPAVL 179

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGE+Y+ K  F ALN   +  G KP+ANPRNAA+G LR+L+     +R L    +G+G
Sbjct: 180 EVRGEIYMPKAGFEALNARQLESGGKPFANPRNAAAGSLRQLDSKITASRPLELCAYGVG 239

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           ++          +L+ ++  G P++  ++ A       +YY+ + + R  LPY+IDG+V+
Sbjct: 240 RSDGELPNTHIGILEALKGWGLPISRELKLAKGVAECRAYYDAIGAKRDALPYEIDGVVF 299

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+    Q++LG RAR PRW I+HKF  ++  T LLD++ Q+GRTG +TPVARL+PV + 
Sbjct: 300 KVNAVEQQRELGFRAREPRWAIAHKFPAREEITELLDVEFQVGRTGAITPVARLKPVQVA 359

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D +  L            + +GD V+V+RAG+VIP+++ +I   R  D
Sbjct: 360 GVTVSNATLHNMDEVARL-----------GVMIGDTVIVRRAGDVIPQILGVIAERRPTD 408

Query: 425 AQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           A+    P  CP+C S V       R    ++    + +RC G LAC AQ  + + HFVSR
Sbjct: 409 ARAVHVPEQCPVCGSAVERTQLIKRSKGRESVSEGSIYRCVGRLACQAQLKQAIIHFVSR 468

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG + ++           +R PAD++ L   Q         + GF ++S  NL
Sbjct: 469 RAMDIDGLGDKIVEQLVDK----GLVRSPADLYCLTHEQVI------ELEGFAEISTRNL 518

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I+  R  SL RF+++LGI  VG E A+ LA+   S     + + ++          L
Sbjct: 519 LHAIDASRKPSLARFVYALGIPDVGEETAKLLARALGSLDRIGRALPDV----------L 568

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639
           + +P VG  +A  I  F+++  N   + ALL+E        
Sbjct: 569 VYLPDVGLEVAHEIHSFFEDEHNRTVI-ALLRERGVEPQEE 608



 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 101/250 (40%), Gaps = 17/250 (6%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   +++ +G+   D      D    +      F      + + T I  +   G   
Sbjct: 549 LLARALGSLDRIGRALPDVLVYLPDVGLEVAHEIHSFF---EDEHNRTVIALLRERGVEP 605

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                         +L   +  L I H+    A+ LA+ + S +               D
Sbjct: 606 QEEGDVHPEFAACATLPDLLDRLNIPHIARTGAQRLAERFGSLEAIIAA----------D 655

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENK 650
           WL L +V  + +  A+++ +++    N     A+EA L+E         K      +  +
Sbjct: 656 WLDLRQVERLTEKAARSLRDYFDKSENAERARAIEAQLREFGMHWESERKAAEGLPLAGQ 715

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             V TGTL+ + R + +  +  LGA V+  +S KT  ++ G   GSKL KA + GV +++
Sbjct: 716 TWVLTGTLETMSRDEGKARLEALGAKVAGSVSAKTTCVVAGPGAGSKLTKANEFGVVVLD 775

Query: 711 EEQFLFLLQQ 720
           E QFL  L Q
Sbjct: 776 EAQFLERLAQ 785


>gi|330960233|gb|EGH60493.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 787

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 221/656 (33%), Positives = 340/656 (51%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G     +  +V H +P LSL   +   DLR+F  R+         +      ++ 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGAGSTVE 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     PE++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPEVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L  ++  G PV+  ++ AN     ++YY ++   R +L Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLNALKKWGMPVSRELKLANGVEECLAYYKDIGERRLSLSYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNSLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R   A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPQTA 406

Query: 426 QPFSFPSFCPICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S+      V R    +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 KPVEVPQTCPVCGSQVERTQLVKRSKGKETISEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q         + GF ++S   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   +  +L RFI++LGI  VG E A+ LA+   S     Q +  +          L 
Sbjct: 517 KAIADSKQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650
            +P +G  +A  I  F+++  N   ++ALL E    +    +       S+ +E  
Sbjct: 567 YLPDIGLEVAHEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622



 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 102/257 (39%), Gaps = 20/257 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   +++ + +   +      D    +      F     +         +   G   
Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDIGLEVAHEIHSF--FEDEHNRNVIDALLGECGLQL 603

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +LE  I  L I  VG   A+ LA+ + + +               D
Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLAEKFGTLEAVISA----------D 653

Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEKNVSS-EIEN 649
           WL +   +P   +  A+++ +F+    N      +EA LK+        +K V    +  
Sbjct: 654 WLDMRQALP---EKQAKSVRDFFDANANAERARAIEAQLKDFGMHWRSEKKAVEGLPLAG 710

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +  V TGTL+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ ++
Sbjct: 711 QTWVLTGTLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770

Query: 710 NEEQFLFLLQQYNTTLR 726
           +EE  L  L +    + 
Sbjct: 771 DEEALLKRLTELGVAVD 787


>gi|219682005|ref|YP_002468389.1| DNA ligase (NAD+) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|254781272|sp|B8D6X9|DNLJ_BUCAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219621738|gb|ACL29894.1| DNA ligase (NAD+) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|311085811|gb|ADP65893.1| DNA ligase (NAD+) [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086384|gb|ADP66465.1| DNA ligase (NAD+) [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
          Length = 676

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 222/709 (31%), Positives = 368/709 (51%), Gaps = 50/709 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + ++  L + +  ++  Y+  ++ II D+EYD L R+   +     +L  S   + P  K
Sbjct: 5   KDKIEKLRKILLKYEYFYHTLNQSIISDAEYDYLFRQLYELELKNKELIPS---DSPTQK 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  +     K+ H  P LSLE  +++     F  RI +     ++  + F  E K+DG 
Sbjct: 62  VGSHILQKFKKIKHFSPMLSLENTFDVNGYLNFKKRIKKSI--HNNEPLSFCCELKLDGV 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196
            I+I YE+G FV AA RGDG  GE++++  R I +IP  L   +IP+ +E+RGEV++ K+
Sbjct: 120 AISIIYEEGIFVRAATRGDGFEGENITSNARMIDSIPLKLKGIDIPKRLEIRGEVFMLKS 179

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT--SEIFAKG 253
           +F+ LN +      K ++NPRNAA+G LR ++P     R L F  HG      +      
Sbjct: 180 NFIKLNKKYKLNQNKYFSNPRNAAAGSLRHIDPNITAERKLIFSCHGCDFFVKTNKELTT 239

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+ L K    G PVN  +   ++   I+ +Y ++   R+ L +DIDG+V KV+   LQK
Sbjct: 240 HYQRLMKCLSWGIPVNKEIVICSSDIEIIQFYKKIAQKRNFLDFDIDGIVIKVNSLELQK 299

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           ++G   +SPRW I+ KF+ K+  T L D+  Q+GRTG++TPVA   PV I G +I+ A+L
Sbjct: 300 KIGSTTKSPRWAIAFKFSPKERITTLNDVKFQVGRTGVITPVAYFNPVYISGVMISKASL 359

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN++ I+ L           ++   D + + R+G+VIP+++++I   R  +A+   FPSF
Sbjct: 360 HNKNEIERL-----------NLHFNDTITICRSGDVIPRLLNVIEIRRCDNAKKIIFPSF 408

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C + ++ ++  K  +      C  GL C AQ+ + L HF S+ +  + GLG + ++ 
Sbjct: 409 CPVCNTELLENIEEKLIR------CHSGLTCDAQKKQALYHFFSKKSLYVVGLGPKIINE 462

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       ++ P D F L+            +   G      + +SI K +  +L+ F
Sbjct: 463 LVEK----GLVKNPIDFFYLKDIDLI------QLKNVGKRKSIKIINSIKKCKKTTLKCF 512

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGI  VG  +A  +A Y++                N + L L  +  VG II+  I 
Sbjct: 513 IYALGIPGVGEVVAGKIANYFIKLDKLM----------NSNILELNCISGVGKIISNNIF 562

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            ++    N   V  L+K+    +   E     +  +   NKK+V TG  +   R + +  
Sbjct: 563 NYFSTISNREMVVKLIKQAGIFLNDQEIHKINSEKTYFFNKKIVLTGVFKSFSRIELKTI 622

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  LGA +S  +SRKTD +I G+N GSK  +A+ L VKI+N+E+   L+
Sbjct: 623 LLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQEELNSLI 671


>gi|15616692|ref|NP_239904.1| DNA ligase (NAD+) [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|11132251|sp|P57172|DNLJ_BUCAI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|25294009|pir||F84937 DNA ligase (NAD) (EC 6.5.1.2) [imported] - Buchnera sp.  (strain
           APS)
 gi|10038755|dbj|BAB12790.1| DNA ligase (NAD+) [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 675

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 222/709 (31%), Positives = 368/709 (51%), Gaps = 50/709 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + ++  L + +  ++  Y+  ++ II D+EYD L R+   +     +L  S   + P  K
Sbjct: 5   KDKIEKLRKILLKYEYFYHTLNQSIISDAEYDYLFRQLYELELKNKELIPS---DSPTQK 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G  +     K+ H  P LSLE  +++     F  RI +     ++  + F  E K+DG 
Sbjct: 62  VGSHILQKFKKIKHFSPMLSLENTFDVNGYLNFKKRIKKSI--HNNEPLSFCCELKLDGV 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196
            I+I YE+G FV AA RGDG  GE++++  R I +IP  L   +IP+ +E+RGEV++ K+
Sbjct: 120 AISIIYEEGIFVRAATRGDGFEGENITSNARMIDSIPLKLKGIDIPKRLEIRGEVFMLKS 179

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT--SEIFAKG 253
           +F+ LN +      K ++NPRNAA+G LR ++P     R L F  HG      +      
Sbjct: 180 NFIKLNKKYKLNQNKYFSNPRNAAAGSLRHIDPNITAERKLIFSCHGCDFFVKTNKELTT 239

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y+ L K    G PVN  +   ++   I+ +Y ++   R+ L +DIDG+V KV+   LQK
Sbjct: 240 HYQRLMKCLSWGIPVNKEIVICSSDIEIIQFYKKIAQKRNFLDFDIDGIVIKVNSLELQK 299

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           ++G   +SPRW I+ KF+ K+  T L D+  Q+GRTG++TPVA   PV I G +I+ A+L
Sbjct: 300 KIGSTTKSPRWAIAFKFSPKERITTLNDVKFQVGRTGVITPVAYFNPVYISGVMISKASL 359

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN++ I+ L           ++   D + + R+G+VIP+++++I   R  +A+   FPSF
Sbjct: 360 HNKNEIERL-----------NLHFNDTITICRSGDVIPRLLNVIEIRRCDNAKKIIFPSF 408

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C + ++ ++  K  +      C  GL C AQ+ + L HF S+ +  + GLG + ++ 
Sbjct: 409 CPVCNTELLENIEEKLIR------CHSGLTCDAQKKQALYHFFSKKSLYVVGLGPKIINE 462

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       ++ P D F L+            +   G      + +SI K +  +L+ F
Sbjct: 463 LVEK----GLVKNPIDFFYLKDIDLI------QLKNVGKRKSIKIINSIKKCKKTTLKCF 512

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I++LGI  VG  +A  +A Y++                N + L L  +  VG II+  I 
Sbjct: 513 IYALGIPGVGEVVAGKIANYFIKLDKLM----------NSNILELNCISGVGKIISNNIF 562

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            ++    N   V  L+K+    +   E     +  +   NKK+V TG  +   R + +  
Sbjct: 563 NYFSTISNREMVVKLIKQAGIFLNDQEIHKINSEKTYFFNKKIVLTGVFKSFSRIELKTI 622

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +  LGA +S  +SRKTD +I G+N GSK  +A+ L VKI+N+E+   L+
Sbjct: 623 LLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQEELNSLI 671


>gi|237804493|ref|YP_002888647.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231272793|emb|CAX09699.1| NAD-dependent DNA ligase [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 663

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 219/713 (30%), Positives = 349/713 (48%), Gaps = 71/713 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R +  +L  E+  HD  YY  ++P I D  YD   R    I    P+   S     P   
Sbjct: 6   RDDYIALCAELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSW---SPTMY 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   +     V HS P LS+  ++++++L +F +R  +        S  ++LE KIDG 
Sbjct: 63  LGDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLG----YSPGYSLELKIDGI 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + IRYEK  F  A  RG+G  GED++A +  I ++P  L    PE +EVRGEV++S   
Sbjct: 119 AVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEA 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  LN      G+  +ANPRNAA G L+ L+  +        +   G  ++   +  +E 
Sbjct: 179 FEELNACQREQGKLEFANPRNAAGGTLKLLSFKEA-AKRKLDLSVYGLITDQKKRSHFEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           LQ     GF V    +Q  +   +V    E++ +R+ LP  IDG+V KVD  + Q +LG 
Sbjct: 238 LQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDRLGL 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            ++  RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+N+D
Sbjct: 298 TSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +DIR+GD V V++ GEVIPK+V I + +R  ++ P+  PS CP+C
Sbjct: 358 EIEK-----------KDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESGPWKMPSLCPVC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
              VV++          + RC   L       +    F S+ A NI+ LG++ +   F+ 
Sbjct: 407 HEPVVKEK--------VSVRCINPLCSGGMLEKIC-FFASKSALNIDHLGEKVVTKLFE- 456

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I   +DIF L             + GF D S+ NL  SI   + ++L+R + +L
Sbjct: 457 ---VGLISSCSDIFALTEEDLK------QVPGFKDRSIQNLLASIAGAKKVALDRLLTAL 507

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  VG+  A +LA ++ +     +               L+ +  +G  +A +IV F+ 
Sbjct: 508 SIPFVGSSGAIALADHFGTLDKVIEA----------SLDELMSIEGIGPKVAASIVAFFS 557

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL---- 673
              N   +   ++E+   +   + +  + ++ K  VFTGTLQ++ R +A+E +  L    
Sbjct: 558 KHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVFTGTLQQMTRTQAEERIRSLGGKV 616

Query: 674 -------GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
                             T  +I G   G KL+KAQ LG+ I NE + L +L 
Sbjct: 617 SSSVSKS-----------TYAVIAGSEAGGKLKKAQDLGLSIWNESELLRILD 658


>gi|282882908|ref|ZP_06291513.1| DNA ligase (NAD(+)) [Peptoniphilus lacrimalis 315-B]
 gi|281297319|gb|EFA89810.1| DNA ligase (NAD(+)) [Peptoniphilus lacrimalis 315-B]
          Length = 664

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 196/710 (27%), Positives = 344/710 (48%), Gaps = 59/710 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           QA +++  L +E++ +   YY   K +I D  YD +      +             + P 
Sbjct: 2   QASEKMQKLVKELNRYGYYYYTLDKSLIDDKVYDRMYDELVNLEKE----ENIVLADSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFT 129
            ++GG++  S  K  H  P  S+ K  + ++LR +I +   F +  +++       +   
Sbjct: 58  TRVGGQILKSFQKHKHLNPLYSMNKAQSFDELRDWIEKNKNFIENYNESHEDKLSEMELI 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           LE K DG  I + YE G    A  RG+G  GE +++ ++ I +IP  LS++   ++E++G
Sbjct: 118 LELKFDGLTINLTYEDGYLKMATTRGNGLIGEVITSQVKTINSIP--LSIDYKGLVEIQG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E  +        N +      +   N RNAA+G LR L+P +   R L  + + +     
Sbjct: 176 EGLMPLKSLEEYNKKA----SEKLKNARNAAAGALRNLDPKETKARNLTAYFYNVNYIEG 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K   EM + ++  GF V+    +  +F  +    N +  IR  LP  IDG+  K+++
Sbjct: 232 KNFKDDVEMKEFLKSQGFLVSKYNYKVKSFKDVQEKINYIADIRKDLPIQIDGVTIKIND 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F  ++ L    + PRW I++KF  + A ++LL++   +GR+  +TP A +EPV I G  I
Sbjct: 292 FKTREILSFTQKFPRWSIAYKFEAEIAESKLLEVVWNVGRSSKVTPSAIIEPVEIDGVTI 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATL+N D I             + +R+   +L++R+ +VIP+++ ++ ++        
Sbjct: 352 KRATLNNFDDINR-----------KKLRLNSNILIRRSNDVIPEILGVLPSD--EKTFAI 398

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C + + +D             C   L+C  Q + RL HF SRDA NI G  +
Sbjct: 399 KRPKVCPACGAHLFQD--------GVHIFCPNTLSCRPQLVSRLVHFASRDAMNINGFSE 450

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++ F         ++   DI+ L+            + GF +    NL ++I   +N 
Sbjct: 451 KTIEKFMDE----LGLKEIPDIYNLKYDDIIK------LEGFKEKKTKNLLEAIENSKNP 500

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L  FI+++GI +VG + AR LAK+Y ++  F++            +  LI V  +G I 
Sbjct: 501 FLSNFIYAIGIANVGIKTARDLAKHYKNFMAFSKA----------SFDDLIEVGDIGPIT 550

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+ I+ F+ +      ++ L       +     N   + E K +V TG+L + +R + +E
Sbjct: 551 AKEIINFFADDHIKDGLQKLFSYGIKVVYEENLNKDLKFEGKTVVITGSLSR-KRKELEE 609

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +   GA VS+ +S+ TD +IVG+NPGSK +KA++L V+I+NEE+   +L
Sbjct: 610 ELINNGAKVSSSVSKNTDFLIVGENPGSKYDKARELSVEILNEEELNKIL 659


>gi|146282220|ref|YP_001172373.1| NAD-dependent DNA ligase LigA [Pseudomonas stutzeri A1501]
 gi|145570425|gb|ABP79531.1| DNA ligase, NAD-dependent [Pseudomonas stutzeri A1501]
          Length = 802

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 222/657 (33%), Positives = 343/657 (52%), Gaps = 53/657 (8%)

Query: 1   MKKRQLIPIEAL----SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCD 56
           M+     P   L    S + A + ++ L  EI  H+  YY   +P + D+EYD L     
Sbjct: 1   MRSESAQPQSRLRPMPSAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELK 60

Query: 57  AIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR 116
           A+    P+L     P  P  ++GG    +  +V H +P LSL   +  +DL  F  R+  
Sbjct: 61  ALEAEHPELV---TPESPTQRVGGAALAAFGQVRHEVPMLSLGNAFEEQDLLDFDRRVRE 117

Query: 117 FWQKK------DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI 170
                      D   + ++ EPK+DG  +++ YE G  V  A RGDG +GED+SA +R +
Sbjct: 118 GLDLPAGDLFGDGAVVEYSCEPKLDGLAVSLLYENGHLVRGATRGDGSTGEDISANVRTV 177

Query: 171 PTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP 229
             IP  L  +  P ++EVRGE+Y+ K  F ALN   +  G KP+ANPRNAA+G LR+L+ 
Sbjct: 178 RNIPLKLHGSGWPAVLEVRGEIYMPKAGFEALNARQLESGGKPFANPRNAAAGSLRQLDS 237

Query: 230 T-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM 288
               +R L    +G+G++          +LQ ++  G P++  ++ A       +YY+ +
Sbjct: 238 KITASRPLELCAYGVGRSDGELPDTHIGILQALKGWGLPISRELKLAKGVAECRAYYDAI 297

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
            + R  LPY+IDG+V+KV+    Q++LG RAR PRW I+HKF  ++  T LLD++ Q+GR
Sbjct: 298 GAKRDALPYEIDGVVFKVNAVEQQRELGFRAREPRWAIAHKFPAREEITELLDVEFQVGR 357

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG +TPVARL+PV + G  ++NATLHN D +  L            + +GD V+V+RAG+
Sbjct: 358 TGAITPVARLKPVQVAGVTVSNATLHNMDEVARL-----------GVMIGDTVIVRRAGD 406

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGL 462
           VIP+++ +I   R  DA+    P  CP+C S V       R    ++    + +RC G L
Sbjct: 407 VIPQILGVIAERRPTDARAVHVPEQCPVCGSAVERTQLIKRSKGRESVSEGSIYRCVGRL 466

Query: 463 ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT 522
           AC AQ  + + HFVSR A +I+GLG + ++           +R PAD++ L   Q     
Sbjct: 467 ACQAQLKQAIIHFVSRRAMDIDGLGDKIVEQLVDK----GLVRSPADLYCLTHEQVI--- 519

Query: 523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582
               + GF ++S  NL  +I+  R  SL RF+++LGI  VG E A+ LA+   S     +
Sbjct: 520 ---ELEGFAEISTRNLLHAIDASRKPSLARFVYALGIPDVGEETAKLLARALGSLDRIGR 576

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639
            + ++          L+ +P VG  +A  I  F+++  N   + ALL+E        
Sbjct: 577 ALPDV----------LVYLPDVGLEVAHEIHSFFEDEHNRTVI-ALLRERGVEPQEQ 622



 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 103/253 (40%), Gaps = 17/253 (6%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   +++ +G+   D      D    +      F      + + T I  +   G   
Sbjct: 563 LLARALGSLDRIGRALPDVLVYLPDVGLEVAHEIHSFF---EDEHNRTVIALLRERGVEP 619

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                         +L   +  L I H+    A+ LA+ + S +               D
Sbjct: 620 QEQGDVHPEFAACATLPDLLDRLNIPHIARTGAQRLAERFGSLEAIIAA----------D 669

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENK 650
           WL L +V  + +  A+++ +++  P N      +EA L+E         K      +  +
Sbjct: 670 WLDLRQVERLTEKAARSLRDYFDKPENAERARLIEAQLREFGMHWESERKAAEGLPLAGQ 729

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             V TGTL+ + R + +  +  LGA V+  +S KT  ++ G   GSKL KA +LGV +++
Sbjct: 730 TWVLTGTLETMSRDEGKARLEALGAKVAGSVSAKTTCVVAGPGAGSKLTKANELGVTVLD 789

Query: 711 EEQFLFLLQQYNT 723
           E QF+  L Q  +
Sbjct: 790 ESQFIERLAQLGS 802


>gi|166216289|sp|A4VKN0|DNLJ_PSEU5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 788

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 219/641 (34%), Positives = 339/641 (52%), Gaps = 49/641 (7%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S + A + ++ L  EI  H+  YY   +P + D+EYD L     A+    P+L     P 
Sbjct: 3   SAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELV---TPE 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSI 126
            P  ++GG    +  +V H +P LSL   +  +DL  F  R+             D   +
Sbjct: 60  SPTQRVGGAALAAFGQVRHEVPMLSLGNAFEEQDLLDFDRRVREGLDLPAGDLFGDGAVV 119

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEII 185
            ++ EPK+DG  +++ YE G  V  A RGDG +GED+SA +R +  IP  L  +  P ++
Sbjct: 120 EYSCEPKLDGLAVSLLYENGHLVRGATRGDGSTGEDISANVRTVRNIPLKLHGSGWPAVL 179

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244
           EVRGE+Y+ K  F ALN   +  G KP+ANPRNAA+G LR+L+     +R L    +G+G
Sbjct: 180 EVRGEIYMPKAGFEALNARQLESGGKPFANPRNAAAGSLRQLDSKITASRPLELCAYGVG 239

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
           ++          +LQ ++  G P++  ++ A       +YY+ + + R  LPY+IDG+V+
Sbjct: 240 RSDGELPDTHIGILQALKGWGLPISRELKLAKGVAECRAYYDAIGAKRDALPYEIDGVVF 299

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+    Q++LG RAR PRW I+HKF  ++  T LLD++ Q+GRTG +TPVARL+PV + 
Sbjct: 300 KVNAVEQQRELGFRAREPRWAIAHKFPAREEITELLDVEFQVGRTGAITPVARLKPVQVA 359

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++NATLHN D +  L            + +GD V+V+RAG+VIP+++ +I   R  D
Sbjct: 360 GVTVSNATLHNMDEVARL-----------GVMIGDTVIVRRAGDVIPQILGVIAERRPTD 408

Query: 425 AQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           A+    P  CP+C S V       R    ++    + +RC G LAC AQ  + + HFVSR
Sbjct: 409 ARAVHVPEQCPVCGSAVERTQLIKRSKGRESVSEGSIYRCVGRLACQAQLKQAIIHFVSR 468

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            A +I+GLG + ++           +R PAD++ L   Q         + GF ++S  NL
Sbjct: 469 RAMDIDGLGDKIVEQLVDK----GLVRSPADLYCLTHEQVI------ELEGFAEISTRNL 518

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             +I+  R  SL RF+++LGI  VG E A+ LA+   S     + + ++          L
Sbjct: 519 LHAIDASRKPSLARFVYALGIPDVGEETAKLLARALGSLDRIGRALPDV----------L 568

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639
           + +P VG  +A  I  F+++  N   + ALL+E        
Sbjct: 569 VYLPDVGLEVAHEIHSFFEDEHNRTVI-ALLRERGVEPQEQ 608



 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 103/253 (40%), Gaps = 17/253 (6%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   +++ +G+   D      D    +      F      + + T I  +   G   
Sbjct: 549 LLARALGSLDRIGRALPDVLVYLPDVGLEVAHEIHSFF---EDEHNRTVIALLRERGVEP 605

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                         +L   +  L I H+    A+ LA+ + S +               D
Sbjct: 606 QEQGDVHPEFAACATLPDLLDRLNIPHIARTGAQRLAERFGSLEAIIAA----------D 655

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENK 650
           WL L +V  + +  A+++ +++  P N      +EA L+E         K      +  +
Sbjct: 656 WLDLRQVERLTEKAARSLRDYFDKPENAERARLIEAQLREFGMHWESERKAAEGLPLAGQ 715

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             V TGTL+ + R + +  +  LGA V+  +S KT  ++ G   GSKL KA +LGV +++
Sbjct: 716 TWVLTGTLETMSRDEGKARLEALGAKVAGSVSAKTTCVVAGPGAGSKLTKANELGVTVLD 775

Query: 711 EEQFLFLLQQYNT 723
           E QF+  L Q  +
Sbjct: 776 ESQFIERLAQLGS 788


>gi|170722763|ref|YP_001750451.1| NAD-dependent DNA ligase LigA [Pseudomonas putida W619]
 gi|254781396|sp|B1JC06|DNLJ_PSEPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169760766|gb|ACA74082.1| DNA ligase, NAD-dependent [Pseudomonas putida W619]
          Length = 776

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 223/646 (34%), Positives = 345/646 (53%), Gaps = 48/646 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A   + +L  E+  H+  YY   +P + D+EYD L     A+    P L     P+ P  
Sbjct: 3   AESRIHALRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG    +  +V H +P LSL   +   DLR+F  R+     +    ++ ++ EPK+DG
Sbjct: 60  RVGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVDGLDQP--GAVDYSCEPKLDG 117

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195
             +++ Y  G+ V  A RGDG +GED+SA +R +  IP  L     P ++EVRGEV++SK
Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVFMSK 177

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             F  LN      G K +ANPRNAA+G LR+L+     +R L F  +G+G+ S    +  
Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSASIGESH 237

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L++++  G P++  +R A      ++YY ++   R++LPY+IDG+V+KV+  + Q++
Sbjct: 238 IGILEQLKAWGLPISRELRHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLASQRE 297

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG RAR PRW I+HKF   +  T +LD++ Q+GRTG +TPVARL+PV + G  ++NATLH
Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L            +R+GD V+++RAG+VIP+V+ +++  R  DA+P   PS C
Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPEDARPVQVPSAC 406

Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           P+C S+      V R    +T    A +RC G LAC AQ  + + H+VSR A +I+GLG+
Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++           I  PAD++ LQ  Q         + GF +VS   L D+I   +  
Sbjct: 467 KSVEQLVDE----GLIGSPADLYKLQFDQIVG------LEGFAEVSSKKLLDAIEASKRP 516

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL RFI++LGI  VG E A+ LA+   S     Q +  +          L  +P +G  +
Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQV----------LTYLPDIGLEV 566

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENK 650
           A  I  F+++  N   +E LL              E   S+ +   
Sbjct: 567 AYEIHNFFEDEHNCKVIEQLLGCGMQLQDEGELAAEFAASTTLAGM 612



 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 94/255 (36%), Gaps = 19/255 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   ++  + +          D    +      F      + +   IE +LG G   
Sbjct: 537 VLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF---EDEHNCKVIEQLLGCGMQL 593

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                 +     + +L   I  L I  VG   A  L     S                D 
Sbjct: 594 QDEGELAAEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDSLDKIIAA------DGIDL 647

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA----LLKEVSPSIGRHEKNVSSEIENK 650
             +L          A+A+ EF+++  N          LL          +      +  +
Sbjct: 648 RQALAA------KQAEAVREFFKDEANQKLARDIEAQLLAFGMHWNSEKKVAEGLPLAGQ 701

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             V TGTL+++ R  A+E +  LGA V+  +S KT  ++ G   GSKL KA +LGVK+++
Sbjct: 702 TWVLTGTLERMSRDIAKEKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVKVLD 761

Query: 711 EEQFLFLLQQYNTTL 725
           E+ F+  L +    +
Sbjct: 762 EDAFVVFLDEQGIAI 776


>gi|295090337|emb|CBK76444.1| DNA ligase, NAD-dependent [Clostridium cf. saccharolyticum K10]
          Length = 676

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 190/716 (26%), Positives = 314/716 (43%), Gaps = 61/716 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++  A  ++  L Q ++ H   YY  + P I D+EYD +  + + +             N
Sbjct: 11  TMNTA-DKIKELVQTLNRHRHAYYNLNAPEISDAEYDRMYDQLERLEEE----TGIIYSN 65

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +G      L KV H  P LSL+K   +EDL +F                      
Sbjct: 66  SPTQTVGYPPVSELKKVPHPHPLLSLDKTKQVEDLYRFCNGHAALL------------ML 113

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  + + YE G+ + AA RGDG  GE+++  I     IP  +  +  E + V GE +
Sbjct: 114 KLDGLTVKLTYENGRLMEAATRGDGEIGEEITHNIPTFENIPLTV--SYKERLVVTGEAF 171

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL--GKTSEI 249
           I K DF  LN  +     KPY N RN A+G +R L+P     R + F    +  G     
Sbjct: 172 IRKKDFERLNLTIRDKDGKPYKNARNLAAGSVRSLDPENCKGRCVTFLPFNVLEGLDEGE 231

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV---SYYNEMKSIRSTLPYDIDGLVYKV 306
            +  + E L ++  LGF     +                 ++K     L   IDG+V   
Sbjct: 232 HSNSREERLYQLSKLGFGSCPYIPLNPDQVSPEYLELRIQDLKEKAEMLDLPIDGMVLIF 291

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +     G      +  ++ KF ++   T L  I+    R G L PVA  + V+I G 
Sbjct: 292 DDLAYSASRGRTGHHYKDGLAFKFEDETYETTLQSIEWTPSRFGELAPVAVFDTVDIDGC 351

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++ ATLHN  +I+ L+              G R+LV +   +IP + D +   R+ DA 
Sbjct: 352 SVSRATLHNLTFIRELELVS-----------GCRILVSKRNMIIPHIEDNLDRGRYQDA- 399

Query: 427 PFSFPSFCPICQSRVV-RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
               P+ CP C +    R    + G+++    C+   +C  QQL++  HFV R A NIEG
Sbjct: 400 ---APAICPCCGAPTELRRKTAENGRIIETVHCSNP-SCEIQQLKKFVHFVCRKAMNIEG 455

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           L +  L+ F         +R   DI+ L + +     +I  + GFG+ S   L+++I   
Sbjct: 456 LSEATLEKFLN----LGYLRTFHDIYHLDQHRD----EIIRLDGFGEKSFDRLWNAIQAS 507

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           RN +  R++ S+ I  VG   +R L   +  +  +F             D     ++   
Sbjct: 508 RNTTFVRYLISMDIPMVGRTKSRVLDTIFSGNLDDFRAA--------AIDDYDFSQLEDF 559

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQ 662
           G  + + I +++ +  N+   + L KE +    + E      +    K +V TG L+   
Sbjct: 560 GATLNRNIHDWFADEENLALWDTLQKEFTFEERKEETIMAKDNVFAGKTIVATGKLENFT 619

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +  + + ++GA   + ++ KTD +I G+  GSKL KA+ LG+ I++E +FL  +
Sbjct: 620 RSEINDKILEIGAKPGSSVTGKTDYLICGEKAGSKLAKAKSLGITILSEAEFLAKI 675


>gi|330808456|ref|YP_004352918.1| DNA ligase (NAD(+)) [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376564|gb|AEA67914.1| DNA ligase (NAD(+)) [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 785

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 216/633 (34%), Positives = 333/633 (52%), Gaps = 48/633 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      +  L  E+  H+  Y+   +P I D+EYD L     A+    P+L  S   + 
Sbjct: 1   MNAVETRIQQLRTELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEEQHPELVTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H IP LSL   ++   +R+F  R+                ++ 
Sbjct: 58  PTQRVGSVALSAFSQVRHEIPMLSLGNAFDETTMREFDRRVTEGLDLPMGDLLGGGAAVE 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y+ G  V  A RGDG +GED+S  +R +  IP  L  +  P ++E
Sbjct: 118 YSCEPKLDGLAVSLLYQDGMLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPPLLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY+SK  F  LN   +  G K +ANPRNAA+G LR+L+      R L F  +G+G+
Sbjct: 178 VRGEVYMSKAGFERLNATQLEAGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            +   A      L++++  G P++  ++ A+     + YY ++   R+ LPY+IDG+V+K
Sbjct: 238 VTADIADTHIGNLKQLKAWGLPISRELKLAHGIDECLDYYRDIGERRNALPYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNSIASQRELGFRAREPRWAIAHKFPASEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             + NATLHN D +  L            + +GD V+++RAG+VIP+VV +I   R  DA
Sbjct: 358 VTVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVITERRPDDA 406

Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S V       R    +T    A +RC G LAC AQ  + + HFVSR 
Sbjct: 407 RPVEIPRQCPVCGSHVERTQLIKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG++ ++           +  PAD++ L   Q         + GF ++S  NL 
Sbjct: 467 AMDIEGLGEKSVEQLVDE----GLVGSPADLYALTFEQVVD------LEGFAELSSKNLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   +  SL RFI++LGI  VG E A+ LA+   S +     +  +          L 
Sbjct: 517 AAIVDSKKPSLARFIYALGIPDVGEETAKVLARSLGSLERVQAAVPQV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
            +P VG  +A  I  F+++P N   ++ LL+  
Sbjct: 567 YLPDVGLEVAHEIHSFFEDPHNRQVIKDLLRHG 599



 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 97/256 (37%), Gaps = 21/256 (8%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   ++E +            D    +      F        +   I+++L  G   
Sbjct: 546 VLARSLGSLERVQAAVPQVLTYLPDVGLEVAHEIHSFF---EDPHNRQVIKDLLRHGLEI 602

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +L  F+  L I  VG   A+ LA  + S +               D
Sbjct: 603 QDQGELGAEFSASTTLGGFLDKLNIPSVGPGGAQKLADKFGSLEAVMNA----------D 652

Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNICAVE----ALLKEVSPSIGRHEKNVSSEIEN 649
           WL +   +P   +  A A+ EF+    N    E     L           +         
Sbjct: 653 WLDMRQALP---EKQANAVREFFAVAANRQQAEAAEQQLRDFGMHWQSEKKVVEGLPEAG 709

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
              V TG+L+ + R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LG+K++
Sbjct: 710 HTWVLTGSLELMSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGLKVL 769

Query: 710 NEEQFLFLLQQYNTTL 725
           +EE F+  L Q+  T+
Sbjct: 770 DEEAFVVFLSQHGITV 785


>gi|300813320|ref|ZP_07093675.1| DNA ligase (NAD(+)) [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512591|gb|EFK39736.1| DNA ligase (NAD(+)) [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 664

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 196/710 (27%), Positives = 344/710 (48%), Gaps = 59/710 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           QA +++  L +E++ +   YY   K +I D  YD +      +             + P 
Sbjct: 2   QASEKMQKLVKELNRYGYYYYTLDKSLIDDKVYDRIYDELVNLEKE----ENIVLADSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFT 129
            ++GG++  S  K  H  P  S+ K  + ++LR +I +   F +  +++       +   
Sbjct: 58  TRVGGQILKSFQKHKHLNPLYSMNKAQSFDELRDWIEKNKNFIENYNESHEDKLSEMELI 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           LE K DG  I + YE G    A  RG+G  GE +++ ++ I +IP  LS++   ++E++G
Sbjct: 118 LELKFDGLTINLTYEDGYLKMATTRGNGLIGEVITSQVKTINSIP--LSIDYKGLVEIQG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E  +        N +      +   N RNAA+G LR L+P +   R L  + + +     
Sbjct: 176 EGLMPLKSLEEYNKKA----SEKLKNARNAAAGALRNLDPKETKARNLTAYFYNVNYIEG 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K   EM   ++  GF V+    +  +F  +    N +  IR  LP  IDG+  K+++
Sbjct: 232 KNFKDDVEMKAFLKSQGFLVSKYNYKVKSFKDVQEKINYIADIRKDLPIQIDGVTIKIND 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F  ++ L    + PRW I++KF  + A ++LL++   +GR+  +TP A +EPV I G  I
Sbjct: 292 FKTREILSFTQKFPRWSIAYKFEAEIAESKLLEVVWNVGRSSKVTPSAIIEPVEIDGVTI 351

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATL+N D I             + +R+   +L++R+ +VIP+++ ++ ++        
Sbjct: 352 KRATLNNFDDINR-----------KKLRLNSNILIRRSNDVIPEILGVLPSD--EKTFAI 398

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C + + +D             C   L+C  Q + RL HF SRDA NI G  +
Sbjct: 399 KRPEVCPACGAHLFQD--------GVHIFCPNTLSCRPQLVSRLVHFASRDAMNINGFSE 450

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++ F         ++   DI+ L+            + GF +    NL ++I   +N 
Sbjct: 451 KTIEKFMDE----LGLKEIPDIYNLKYDDIIK------LEGFKEKKTKNLLEAIENSKNP 500

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L  FI+++GI +VG + AR LAK+Y ++  F++            +  LI V  +G I 
Sbjct: 501 FLSNFIYAIGIANVGIKTARDLAKHYKNFMAFSKA----------SFDDLIEVGDIGPIT 550

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+ I+ F+++      ++ L       +     N   + E K +V TG+L + +R + +E
Sbjct: 551 AKEIINFFEDDHIKDGLQKLFSYGIDVVYEENLNKDLKFEGKTVVITGSLSR-KRKELEE 609

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +   GA VS+ +S+ TD +IVG+NPGSK +KA++L V+I+NEE+   +L
Sbjct: 610 ELINNGAKVSSSVSKNTDFLIVGENPGSKYDKARELSVEILNEEELNKIL 659


>gi|70729275|ref|YP_259012.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens Pf-5]
 gi|123734866|sp|Q4KFH1|DNLJ_PSEF5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|68343574|gb|AAY91180.1| DNA ligase, NAD-dependent [Pseudomonas fluorescens Pf-5]
          Length = 788

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 220/632 (34%), Positives = 334/632 (52%), Gaps = 48/632 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +  A   +  L  E+  H+  Y+   +P I D+EYD L R   A+    P+L  S   + 
Sbjct: 1   MTAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFRELKALEAEHPELVTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G     +  +V H IP LSL   +   D+R+F  R+         +      ++ 
Sbjct: 58  PTQRVGSAALSAFTQVRHEIPMLSLGNAFEEVDMREFDRRVNEGLDLPAGDLFGGGAAVE 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y+ G  V  A RGDG +GED+S  +R +  IP  L  +  P  +E
Sbjct: 118 YSCEPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPATLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   +  G K +ANPRNAA+G LR+L+     +R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNAAQLEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A      L++++  G P++  +R A      + YY E+   R+ LPY+IDG+V+K
Sbjct: 238 VSADIADTHIGNLERLKQWGMPISRELRLAKGIDECLDYYREIGERRNALPYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNSIASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLQPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VTVSNATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVTERRPENA 406

Query: 426 QPFSFPSFCPICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S       V R    +T    A +RC G LAC AQ  + + HFVSR 
Sbjct: 407 RPVQIPESCPVCGSHVERTQLVKRSKGRETVSEGAVYRCVGRLACGAQLKQAIIHFVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++           I  PAD++ L+  Q         + GF +VS   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEN----LIASPADLYRLKYEQIID------LEGFAEVSSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   +  +L RFI++LGI  VG E A+ LA+   S +   Q +  +          L 
Sbjct: 517 KAIEDSKRPALARFIYALGIPDVGEETAKVLARSLGSLERVQQALPQV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
            +P VG  +A  I  F+++  N   + +LL  
Sbjct: 567 YLPDVGLEVAHEIHSFFEDSHNQEVIGSLLAA 598



 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 98/253 (38%), Gaps = 18/253 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   ++E + +          D    +      F      Q     +      G V 
Sbjct: 546 VLARSLGSLERVQQALPQVLTYLPDVGLEVAHEIHSFFEDSHNQEVIGSLLAADQCGLVL 605

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +L   +  L I  VG   A+ LA  + S Q   +           D
Sbjct: 606 QDQGELGAEFAASTTLGGMLDKLNIPSVGPGAAQKLADKFGSLQGVIEA----------D 655

Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRN----ICAVEALLKEVSPSIGRHEKNVSSEIEN 649
           WL +   +P   +  A+A+ EF+ NP N        + L           +      +  
Sbjct: 656 WLDMRQALP---EKQAKAVREFFDNPANAQLAQAIEQQLQAFGMHWQSEKKVVAGLPLAG 712

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +  V TG+L+ + R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LG+K++
Sbjct: 713 QTWVLTGSLELMSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGLKVL 772

Query: 710 NEEQFLFLLQQYN 722
           +EE F+  L ++ 
Sbjct: 773 DEEAFVAFLTEHG 785


>gi|237799321|ref|ZP_04587782.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331022177|gb|EGI02234.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 703

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 221/656 (33%), Positives = 336/656 (51%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +P LSL   +   DLR+F  R+             +   + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P ++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPGVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L  ++  G PV+  ++ A+     ++YY ++   R TL Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLNALKKWGMPVSRELKLADGVEECLAYYRDIGERRLTLSYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R   A
Sbjct: 358 VMVANATLHNMDEVARL-----------GVMIGDTVIIRRAGDVIPQVVQVVAERRPDTA 406

Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S V       R    +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RPVEVPQTCPVCGSHVERTQLIKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +I GLG + ++     +     I  PAD++ L+  Q         + GF ++S   L 
Sbjct: 467 AMDIGGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  +          L 
Sbjct: 517 KAITDSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650
            +P VG  +A  I  F+++  N   ++ALL E    +    +       S+ +E  
Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 19/173 (10%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   +++ + +   +      D    +      F     +         +   G   
Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLQL 603

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +LE  I  L I  VG   A  LA+ + + +               D
Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPLVGPGAALKLAEKFGTLEAIIGA----------D 653

Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNV 643
           WL +   +P   +  A+++ +F+ +  N     A+EA LK+        +K V
Sbjct: 654 WLDMRQALP---EKQAKSVRDFFDDSANAERARAIEAQLKDFGMHWRSEKKTV 703


>gi|255310946|ref|ZP_05353516.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 6276]
 gi|255317247|ref|ZP_05358493.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 6276s]
 gi|296435662|gb|ADH17836.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/9768]
 gi|296436585|gb|ADH18755.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/11222]
 gi|296437522|gb|ADH19683.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/11074]
 gi|297140021|gb|ADH96779.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/9301]
          Length = 663

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 222/714 (31%), Positives = 352/714 (49%), Gaps = 73/714 (10%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R +  +L  E+  HD  YY  ++P I D  YD   R    I    P+   S     P   
Sbjct: 6   RDDYIALCTELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSW---SPTMY 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   +     V HS P LS+  ++++++L +F +R  +        S  ++LE KIDG 
Sbjct: 63  LGDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLG----YSPGYSLELKIDGI 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + IRYEK  F  A  RG+G  GED++A +  I ++P  L    PE +EVRGEV++S   
Sbjct: 119 AVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEA 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  LN      G+  +ANPRNAA G L+ L+  +   R L+  V+GL    +  +   +E
Sbjct: 179 FEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGLITEQKKRS--HFE 236

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ     GF V    +Q  +   +V    E++ +R  LP  IDG+V KVD  + Q +LG
Sbjct: 237 NLQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRVALPMAIDGVVIKVDNIAHQDRLG 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             ++  RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+N+
Sbjct: 297 LTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQ 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +DIR+GD V V++ GEVIPK+V I + +R  +++P+  PS CP+
Sbjct: 357 DEIEK-----------KDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLCPV 405

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C   VV++          + RC   L       +    F S+ A NI+ LG++ +   F+
Sbjct: 406 CHEPVVKEK--------VSVRCINPLCSGGMLEKIC-FFASKSALNIDHLGEKVVTKLFE 456

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I   +DIF L             + GF D S+ NL  SI   + ++L+R + +
Sbjct: 457 ----VGLISSCSDIFALTEEDLK------QVPGFKDRSIQNLLASIAGAKKVTLDRLLTA 506

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           L I  VG+  A +LA ++ +     +               L+ +  +G  +A +IV F+
Sbjct: 507 LSIPFVGSSGAIALADHFGTLDKVIEA----------SLDELMSIEGIGPKVAASIVAFF 556

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL--- 673
               N   +   ++E+   +   + +  + ++ K  V TGTLQ++ R +A+E +  L   
Sbjct: 557 SKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLGGK 615

Query: 674 --------GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
                              T  +I G   G KL+KAQ LG+ I NE + L +L 
Sbjct: 616 VSSSVSKS-----------TYAVIAGSEAGGKLKKAQDLGLSIWNESELLRILD 658


>gi|331015921|gb|EGH95977.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 787

 Score =  433 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 223/656 (33%), Positives = 341/656 (51%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++ A   +  L  E+  H+  Y+   +P I D+EYD L     A+    P L     P+ 
Sbjct: 1   MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +  LSL   +   DLR+F  R+             +   + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     PE++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPELLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ A+     ++YY ++   R +L Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++V  R   A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPETA 406

Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S V       R    +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 KPVEVPQSCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q         + GF ++S   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  +          L 
Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650
            +P VG  +A  I  F+++  N   ++ALL E    +    +       S+ +E  
Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622



 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 104/257 (40%), Gaps = 20/257 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   +++ + +   +      D    +      F     +         +   G   
Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLQL 603

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +LE  I  L I  VG   A+ LA  + + +               D
Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAVISA----------D 653

Query: 595 WLSLIR-VPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649
           WL + + +P   +  A+++ +F+ +  N     A+EA LK+        +K V    +  
Sbjct: 654 WLDMRQTLP---EKQAKSVRDFFDDNANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ ++
Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770

Query: 710 NEEQFLFLLQQYNTTLR 726
           +EE  L  L +    + 
Sbjct: 771 DEEALLKRLTELGVAID 787


>gi|28870811|ref|NP_793430.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|81730313|sp|Q87YY6|DNLJ_PSESM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28854060|gb|AAO57125.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 787

 Score =  433 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 223/656 (33%), Positives = 341/656 (51%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++ A   +  L  E+  H+  Y+   +P I D+EYD L     A+    P L     P+ 
Sbjct: 1   MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +  LSL   +   DLR+F  R+             +   + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     PE++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPELLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ A+     ++YY ++   R +L Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++V  R   A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPETA 406

Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S V       R    +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 KPVEVPQSCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q         + GF ++S   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  +          L 
Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650
            +P VG  +A  I  F+++  N   ++ALL E    +    +       S+ +E  
Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622



 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 104/257 (40%), Gaps = 20/257 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   +++ + +   +      D    +      F     +         +   G   
Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLQL 603

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +LE  I  L I  VG   A+ LA  + + +               D
Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAVISA----------D 653

Query: 595 WLSLIR-VPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649
           WL + + +P   +  A+++ +F+ +  N     A+EA LK+        +K V    +  
Sbjct: 654 WLDMRQTLP---EKQAKSVRDFFDDNANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ ++
Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770

Query: 710 NEEQFLFLLQQYNTTLR 726
           +EE  L  L +    + 
Sbjct: 771 DEEALLKRLTELGVAVD 787


>gi|213968905|ref|ZP_03397045.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1]
 gi|301385372|ref|ZP_07233790.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato
           Max13]
 gi|302063632|ref|ZP_07255173.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato K40]
 gi|302133897|ref|ZP_07259887.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213926204|gb|EEB59759.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1]
          Length = 787

 Score =  433 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 224/656 (34%), Positives = 341/656 (51%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++ A   +  L  E+  H+  Y+   +P I D+EYD L     A+    P L     P+ 
Sbjct: 1   MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +  LSL   +   DLR+F  R+             +   + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     PE++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPELLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ A+     ++YY ++   R +L Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++V  R   A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPETA 406

Query: 426 QPFSFPSFCPICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S       V R    +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 KPVEVPQSCPVCGSHVERTQLVKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q         + GF ++S   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  +          L 
Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650
            +P VG  +A  I  F+++  N   +EALL E    +    +       S+ +E  
Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIEALLGECGLQLQDQGELGAEFAASTTLEGL 622



 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 104/257 (40%), Gaps = 20/257 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   +++ + +   +      D    +      F     +         +   G   
Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIEALLGECGLQL 603

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +LE  I  L I  VG   A+ LA  + + +               D
Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAVISA----------D 653

Query: 595 WLSLIR-VPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649
           WL + + +P   +  A+++ +F+ +  N     A+EA LK+        +K V    +  
Sbjct: 654 WLDMRQTLP---EKQAKSVRDFFDDNANAERARAIEAQLKDFGMHWRSEKKAVEGLPLAG 710

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ ++
Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770

Query: 710 NEEQFLFLLQQYNTTLR 726
           +EE  L  L +    + 
Sbjct: 771 DEEALLKRLTELGVAVD 787


>gi|330963250|gb|EGH63510.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 787

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 223/656 (33%), Positives = 342/656 (52%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++ A   +  L  E+  H+  Y+   +P I D+EYD L     A+    P L     P+ 
Sbjct: 1   MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +  LSL   +   DLR+F  R+             + + + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     PE++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPELLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ A+     ++YY ++   R +L Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++V  R   A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPETA 406

Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S V       R    +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 KPVEVPQSCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q         + GF ++S   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  +          L 
Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650
            +P VG  +A  I  F+++  N   ++ALL E    +    +       S+ +E  
Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622



 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 103/257 (40%), Gaps = 20/257 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   +++ + +   +      D    +      F     +         +   G   
Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLQL 603

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +LE  I  L I  VG   A+ LA  + + +               D
Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAVIGA----------D 653

Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649
           WL +   +P   +  A+++ +F+ +  N     A+EA LK+        +K V    +  
Sbjct: 654 WLDMRQALP---EKQAKSVRDFFDDNANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ ++
Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770

Query: 710 NEEQFLFLLQQYNTTLR 726
           +E+  L  L +    + 
Sbjct: 771 DEDALLKRLTELGVAVD 787


>gi|71737941|ref|YP_274013.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|123775130|sp|Q48KR2|DNLJ_PSE14 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71558494|gb|AAZ37705.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|320329466|gb|EFW85458.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 787

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 219/656 (33%), Positives = 338/656 (51%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+         +       + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV++ ++ AN     + YY ++   R TL Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSHELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V       R    +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q         + GF ++S   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  +          L 
Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650
            +P VG  +A  I  F+++  N   ++ALL E    +    +       S+ +E  
Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622



 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 104/257 (40%), Gaps = 20/257 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   +++ + +   +      D    +      F     +         +   G   
Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLQL 603

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +LE  I  L I  VG   A+ LA  + + +               D
Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 653

Query: 595 WLSLIR-VPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649
           WL + + +P   +  A+++ +F+ +  +     A+EA LK+        +K V    +  
Sbjct: 654 WLDMRQTLP---EKQAKSVRDFFDDSAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ ++
Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770

Query: 710 NEEQFLFLLQQYNTTLR 726
           +E+  L  L +    + 
Sbjct: 771 DEDALLKRLTELGVAVD 787


>gi|330973309|gb|EGH73375.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 670

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 218/656 (33%), Positives = 339/656 (51%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+             +   + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGGKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ AN     ++YY ++   R  L Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V       R    +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q         + GF ++S   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           ++I   R  +L RFI++LGI  VG E A+ LA+   S +   Q +  +          L 
Sbjct: 517 NAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650
            +P VG  +A  I  F+++  N   ++ALL E    +    +       S+ +E  
Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRSVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622


>gi|255348508|ref|ZP_05380515.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 70]
 gi|255503049|ref|ZP_05381439.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 70s]
 gi|255506721|ref|ZP_05382360.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis D(s)2923]
 gi|296434735|gb|ADH16913.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis E/150]
 gi|296438453|gb|ADH20606.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis E/11023]
          Length = 663

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 219/713 (30%), Positives = 350/713 (49%), Gaps = 71/713 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R +  +L  E+  HD CYY  ++P I D  YD   R    I    P+   S     P   
Sbjct: 6   RDDYIALCTELVEHDRCYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSW---SPTMY 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   +     V HS P LS+  ++++++L +F +R  +        S  ++LE KIDG 
Sbjct: 63  LGDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLG----YSPGYSLELKIDGI 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + IRYEK  F  A  RG+G  GED++A +  I ++P  L    PE +EVRGEV++S   
Sbjct: 119 AVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEA 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  LN      G+  +ANPRNAA G L+ L+  +        +   G  ++   +  +E 
Sbjct: 179 FEELNACQREQGKLEFANPRNAAGGTLKLLSSKEA-AKRKLDLSVYGLITDQKKRSHFEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           LQ     GF V    +Q  +   +V    E++ +R+ LP  IDG+V KVD  + Q +LG 
Sbjct: 238 LQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDRLGL 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            ++  RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+N+D
Sbjct: 298 TSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +DIR+GD V V++ GEVIPK+V I + +R  +++P+  PS CP+C
Sbjct: 358 EIEK-----------KDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLCPVC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
              VV++          + RC   L       +    F S+ A NI+ LG++ +   F+ 
Sbjct: 407 HEPVVKEK--------VSVRCINPLCSGGMLEKIC-FFASKSALNIDHLGEKVVTKLFE- 456

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I   +DIF L             + GF D S+ NL  SI   + ++L+R + +L
Sbjct: 457 ---VGLISSCSDIFALTEEDLK------QVPGFKDRSIQNLLASIAGAKKVALDRLLTAL 507

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  VG+  A +LA ++ +     +               L+ +  +G  +A +IV F+ 
Sbjct: 508 SIPFVGSSGAIALADHFGTLDKVIEA----------SLDELMSIEGIGPKVAASIVAFFS 557

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL---- 673
              N   +   ++E+   +   + +  + ++ K  V TGTLQ++ R +A+E +  L    
Sbjct: 558 KHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLGGKV 616

Query: 674 -------GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
                             T  +I G   G KL+KAQ LG+ I NE + L +L 
Sbjct: 617 SSSVSKS-----------TYAVIAGSEAGGKLKKAQDLGLSIWNESELLRILD 658


>gi|330879146|gb|EGH13295.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 787

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 223/656 (33%), Positives = 342/656 (52%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++ A   +  L  E+  H+  Y+   +P I D+EYD L     A+    P L     P+ 
Sbjct: 1   MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +  LSL   +   DLR+F  R+             + + + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     PE++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGATGEDISVNVRTVRNIPLKLQGKGWPELLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ A+     ++YY ++   R +L Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++V  R   A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPETA 406

Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S V       R    +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 KPVEVPQSCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q         + GF ++S   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  +          L 
Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650
            +P VG  +A  I  F+++  N   ++ALL E    +    +       S+ +E  
Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622



 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 102/257 (39%), Gaps = 20/257 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   +++ + +   +      D    +      F     +         +   G   
Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLQL 603

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +LE  I  L I  VG   A+ LA  + +                 D
Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLDAVIGA----------D 653

Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649
           WL +   +P   +  A+++ +F+ +  N     A+EA LK+        +K V    +  
Sbjct: 654 WLDMRQALP---EKQAKSVRDFFDDNANAERARAIEAQLKDFGMHWRSEKKAVEGLPLAG 710

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ ++
Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770

Query: 710 NEEQFLFLLQQYNTTLR 726
           +E+  L  L +    + 
Sbjct: 771 DEDALLKRLTELGVAVD 787


>gi|66045063|ref|YP_234904.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
           B728a]
 gi|75502608|sp|Q4ZVF6|DNLJ_PSEU2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|63255770|gb|AAY36866.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. syringae B728a]
          Length = 787

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 219/656 (33%), Positives = 339/656 (51%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+             +   + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGGKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ AN     ++YY ++   R TL Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLTLTYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V       R    +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q         + GF ++S   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R  +L RFI++LGI  VG E A+ LA+   S +   Q +  +          L 
Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650
            +P VG  +A  I  F+++  N   ++ALL E    +    +       S+ +E  
Sbjct: 567 YLPDVGLEVAYEIRSFFEDEHNRSVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622



 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 104/257 (40%), Gaps = 20/257 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   ++E + +   +      D    +      F     +   +     +   G   
Sbjct: 546 VLARSLASLERVKQALPEVLTYLPDVGLEVAYEIRSF--FEDEHNRSVIDALLGECGLQL 603

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +LE  I  L I  VG   A+ LA  + + +               D
Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 653

Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649
           WL +   +P   +  A+++ +F+ +  N     A+EA LK+        +K V    +  
Sbjct: 654 WLDMRQALP---EKQAKSVRDFFDDSANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ ++
Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770

Query: 710 NEEQFLFLLQQYNTTLR 726
           +E+  L  L +    + 
Sbjct: 771 DEDALLKRLIELGVAVD 787


>gi|302185110|ref|ZP_07261783.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
           642]
          Length = 787

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 218/656 (33%), Positives = 339/656 (51%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  ++  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAQLDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+             + + + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     PE++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPEVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ AN     ++YY ++   R  L Y+IDG+V+K
Sbjct: 238 TSADIADTHIGVLETLKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V       R    +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 KAVHVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q         + GF ++S   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R  +L RFI++LGI  VG E A+ LA+   S +   Q +  +          L 
Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650
            +P VG  +A  I  F+++  N   ++ALL E    +    +       S+ +E  
Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622



 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 104/257 (40%), Gaps = 20/257 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   ++E + +   +      D    +      F     +         +   G   
Sbjct: 546 VLARSLASLERVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLQL 603

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +LE  I  L I  VG   A+ LA  + + +               D
Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 653

Query: 595 WLSLIR-VPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649
           WL + + +P   +  A+++ +F+ +  +     A+EA LK+        +K V    +  
Sbjct: 654 WLDMRQTLP---EKQAKSVRDFFDDSVHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ ++
Sbjct: 711 QTWVLTGSLERMSRDIAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770

Query: 710 NEEQFLFLLQQYNTTLR 726
           +E+  L  L +    + 
Sbjct: 771 DEDALLKRLTELGVAVD 787


>gi|320323491|gb|EFW79576.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 787

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 219/656 (33%), Positives = 337/656 (51%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+         +       + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV++ ++ AN     + YY ++   R TL Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSHELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V       R    +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q         + GF ++S   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R  +L RFI +LGI  VG E A+ LA+   S     Q +  +          L 
Sbjct: 517 KAIADSRQPTLARFIHALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650
            +P VG  +A  I  F+++  N   ++ALL E    +    +       S+ +E  
Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622



 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 104/257 (40%), Gaps = 20/257 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   +++ + +   +      D    +      F     +         +   G   
Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLQL 603

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +LE  I  L I  VG   A+ LA  + + +               D
Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 653

Query: 595 WLSLIR-VPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649
           WL + + +P   +  A+++ +F+ +  +     A+EA LK+        +K V    +  
Sbjct: 654 WLDMRQTLP---EKQAKSVRDFFDDSAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ ++
Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770

Query: 710 NEEQFLFLLQQYNTTLR 726
           +E+  L  L +    + 
Sbjct: 771 DEDALLKRLTELGVAVD 787


>gi|330986172|gb|EGH84275.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 787

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 219/656 (33%), Positives = 338/656 (51%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+         +       + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEESDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV++ ++ AN     + YY ++   R TL Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSHELKLANGVEDCLDYYRDIGERRLTLSYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V       R    +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q         + GF ++S   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  +          L 
Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650
            +P VG  +A  I  F+++  N   ++ALL E    +    +       S+ +E  
Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622



 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 105/257 (40%), Gaps = 20/257 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   +++ + +   +      D    +      F     +         +   G   
Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLQL 603

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +LE  I  L I  VG   A+ LA  + + +               D
Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 653

Query: 595 WLSLIR-VPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649
           WL + + +P   +  A+++ +F+ +  +     A+EA LK+        +K V    +  
Sbjct: 654 WLDMRQTLP---EKQAKSVRDFFDDSAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ ++
Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770

Query: 710 NEEQFLFLLQQYNTTLR 726
           +E+  L  L +   T+ 
Sbjct: 771 DEDALLKRLTELGVTVD 787


>gi|330897709|gb|EGH29128.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 657

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 217/656 (33%), Positives = 339/656 (51%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  ++  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAQLDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+             + + + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ AN     ++YY ++   R  L Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V       R    +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q         + GF ++S   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R  +L RFI++LGI  VG E A+ LA+   S +   Q +  +          L 
Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650
            +P VG  +A  I  F+++  N   ++ALL E    +    +       S+ +E  
Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRSVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622


>gi|229137131|ref|ZP_04265750.1| DNA ligase [Bacillus cereus BDRD-ST26]
 gi|228646303|gb|EEL02518.1| DNA ligase [Bacillus cereus BDRD-ST26]
          Length = 589

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 225/632 (35%), Positives = 353/632 (55%), Gaps = 49/632 (7%)

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL   +N  DLR F  R+    Q  DD ++ +  E KIDG  +++ YEKG+F+  A R
Sbjct: 1   MLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICELKIDGLAVSLHYEKGRFIQGATR 57

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG +GED++  ++ I  IP  L+  +   +E RGE Y+ K  F+ LN+E    G   +A
Sbjct: 58  GDGVTGEDITQNLKTIKAIPLRLNEEV--TLEARGEAYMPKRSFVKLNEEKEQNGEDVFA 115

Query: 215 NPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAA+G +R+L+P     R L+ FV+GL    E       E L  +  LGF  N   R
Sbjct: 116 NPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKTILSHSESLDFLGELGFKTNPNRR 175

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
              T   +++Y  E +  R  L Y+IDG+V KVD+ +LQ+ LG  A+SPRW I++KF  +
Sbjct: 176 TCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVALQESLGTTAKSPRWAIAYKFPAE 235

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
           +  TRL  I++ +GRTG++TP A LEPV + G ++  A+LHNED I+            +
Sbjct: 236 EVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRRASLHNEDLIR-----------EK 284

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIR+GD V+VK+AG++IP+VV+++ ++R  + + +  P+ CP C+S +VR          
Sbjct: 285 DIRIGDYVVVKKAGDIIPEVVNVLFDKRTGEEEEYHMPTHCPACESELVRLEEE------ 338

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
            A RC     C AQ  E L HFVSR+A NI+GLG++ +   F+    A  IR  AD+++L
Sbjct: 339 VALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERVITQLFE----ADYIRTFADLYSL 393

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
            + Q         +  FG+ S TNL  +I   +  SLER +F LGIRHVGA+ AR+ A++
Sbjct: 394 TKEQL------LQLERFGEKSATNLVQAIENSKENSLERLLFGLGIRHVGAKAARTFAEH 447

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + +     +               L  +  +G+ +AQ++V ++ N   +  ++   +   
Sbjct: 448 FETMDALVKATE----------EELKAINEIGEKMAQSVVAYFDNEDVLELLQQFKEYGV 497

Query: 634 PSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
               +       +NV S    K +V TG L+ + R +A++ +  LG  V+  +S+ TD++
Sbjct: 498 NMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGRSEAKKKIEALGGKVTGSVSKSTDLV 557

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + G+  GSKL +A++  V++ NEE+FL  L +
Sbjct: 558 VAGEAAGSKLAQAEKHNVEVWNEERFLQELNK 589


>gi|330981936|gb|EGH80039.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 787

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 218/656 (33%), Positives = 339/656 (51%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+             + + + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ AN     ++YY ++   R  L Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V       R    +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q         + GF ++S   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R  +L RFI++LGI  VG E A+ LA+   S +   Q +  +          L 
Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650
            +P VG  +A  I  F+++  N   ++ALL E    +    +       S+ +E  
Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRSVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622



 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 104/257 (40%), Gaps = 20/257 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   ++E + +   +      D    +      F     +   +     +   G   
Sbjct: 546 VLARSLASLERVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRSVIDALLGECGLQL 603

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +LE  I  L I  VG   A+ LA  + + +               D
Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 653

Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649
           WL +   +P   +  A+++ +F+ +  N     A+EA LK+        +K V    +  
Sbjct: 654 WLDMRQALP---EKQAKSVRDFFDDSANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ ++
Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770

Query: 710 NEEQFLFLLQQYNTTLR 726
           +E+  L  L +    + 
Sbjct: 771 DEDALLKRLAELGVAVD 787


>gi|330939980|gb|EGH43181.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 731

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 218/656 (33%), Positives = 339/656 (51%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+             + + + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ AN     ++YY ++   R  L Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V       R    +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q         + GF ++S   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R  +L RFI++LGI  VG E A+ LA+   S +   Q +  +          L 
Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650
            +P VG  +A  I  F+++  N   ++ALL E    +    +       S+ +E  
Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRSVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622



 Score = 81.8 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 71/199 (35%), Gaps = 20/199 (10%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   ++E + +   +      D    +      F     +   +     +   G   
Sbjct: 546 VLARSLASLERVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRSVIDALLGECGLQL 603

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +LE  I  L I  VG   A+ LA  + + +               D
Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 653

Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649
           WL +   +P   +  A+++  F+ +  N     A+EA LK+        +K V    +  
Sbjct: 654 WLDMRQALP---EKQAKSVRGFFDDSANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710

Query: 650 KKLVFTGTLQKIQRHKAQE 668
           +  V TG+L+++ R  A+E
Sbjct: 711 QTWVLTGSLERMSRDVAKE 729


>gi|15604865|ref|NP_219649.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis D/UW-3/CX]
 gi|7673995|sp|O84148|DNLJ_CHLTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|3328547|gb|AAC67737.1| DNA Ligase [Chlamydia trachomatis D/UW-3/CX]
 gi|289525187|emb|CBJ14662.1| NAD-dependent DNA ligase [Chlamydia trachomatis Sweden2]
 gi|297748276|gb|ADI50822.1| NAD-dependent DNA ligase [Chlamydia trachomatis D-EC]
 gi|297749156|gb|ADI51834.1| NAD-dependent DNA ligase [Chlamydia trachomatis D-LC]
          Length = 663

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 217/713 (30%), Positives = 349/713 (48%), Gaps = 71/713 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R +  +L  E+  HD  YY  ++P I D  YD   R    I    P+   S     P   
Sbjct: 6   RDDYIALCTELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSW---SPTMY 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   +     V HS P LS+  ++++++L +F +R  +        S  ++LE KIDG 
Sbjct: 63  LGDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLG----YSPGYSLELKIDGI 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + IRYEK  F  A  RG+G  GED++A +  I ++P  L    PE +EVRGEV++S   
Sbjct: 119 AVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEA 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  LN      G+  +ANPRNAA G L+ L+  +        +   G  ++   +  +E 
Sbjct: 179 FEELNACQREQGKLEFANPRNAAGGTLKLLSSKEA-AKRKLDLSVYGLITDQKKRSHFEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           LQ     GF V    +Q  +   +V    E++ +R+ LP  IDG+V KVD  + Q +LG 
Sbjct: 238 LQLCSQWGFFVAGMPKQCRSRQDVVERIREIEEMRAALPMAIDGVVIKVDNIAYQDRLGL 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            ++  RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+N+D
Sbjct: 298 TSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +DIR+GD V V++ GEVIPK+V I + +R  +++P+  PS CP+C
Sbjct: 358 EIEK-----------KDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLCPVC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
              VV++          + RC   L       +    F S+ A NI+ LG++ +   F+ 
Sbjct: 407 HEPVVKEK--------VSVRCVNPLCSGGMLEKIC-FFASKSALNIDHLGEKVVTKLFE- 456

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I   +DIF L             + GF D S+ NL  SI   + ++L+R + +L
Sbjct: 457 ---VGLISSCSDIFALAEEDLK------QVPGFKDRSIQNLLASIAGAKKVALDRLLTAL 507

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  VG+  A +LA ++ +     +               L+ +  +G  +A +IV F+ 
Sbjct: 508 SIPFVGSSGAIALADHFGTLDKVIEA----------SLDELMSIEGIGPKVAASIVAFFS 557

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT------ 671
              N   +   ++E+   +   + +  + ++ K  V TGTLQ++ R +A+E +       
Sbjct: 558 KHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRCLGGKV 616

Query: 672 -----QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
                +            T  +I G   G KL+KAQ LG+ I NE + L +L 
Sbjct: 617 SSSVSKS-----------TYAVIAGSEAGGKLKKAQDLGLSIWNESELLRILD 658


>gi|13508096|ref|NP_110045.1| DNA ligase [Mycoplasma pneumoniae M129]
 gi|2494169|sp|P78021|DNLJ_MYCPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|1674170|gb|AAB96127.1| DNA ligase [Mycoplasma pneumoniae M129]
          Length = 658

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 198/702 (28%), Positives = 341/702 (48%), Gaps = 61/702 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            ++ ++ +++  +D  YY    P++ D EYD L ++  A+  A P+L +   P+ P  ++
Sbjct: 5   AQIRAIVEQLKRYDYHYYVLDDPLVSDFEYDQLYKQLQALEQAHPELIQ---PDSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +  +  K  H  P LSL+  ++   +  FI  I      ++     F +EPKIDG  
Sbjct: 62  GGIVVEAFNKFPHQNPMLSLDNAFDTATIASFIANINNLTGVQN----RFVVEPKIDGVS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE G    A  RGDG  GEDV + ++ I +IP  L++   + +E+RGE+++ K  F
Sbjct: 118 ISLTYENGLLTRALTRGDGLVGEDVLSNVKTIKSIP--LTIPFHKQVEIRGEIFVDKKTF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEM 257
             +N+ +     KP+AN RN A+G LR LN      R L  F + +     +  + Q  +
Sbjct: 176 AQINENL----AKPFANARNLAAGTLRNLNSEVSAKRKLKAFFYFVPNALTLGCRSQSAV 231

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L +++   FPV+  V   +    ++ Y  +    R  L + +DGLV K+D F    QLG 
Sbjct: 232 LAQLKQWNFPVSKAVASFDRPEALIEYLEQFDQTRDQLNFQVDGLVVKLDNFHFYDQLGF 291

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            ++ PRW +++KF  K   T+L  + + +GRTG +   A+L+PVN+ G +++ ATLHN D
Sbjct: 292 TSKFPRWALAYKFKPKFVQTKLRGVLVTVGRTGKINYTAQLDPVNLEGTVVSAATLHNFD 351

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YIK            +DIR+ D V++ +AGE+IPKV+++ +  R    QP    + CP C
Sbjct: 352 YIK-----------EKDIRLNDTVIIYKAGEIIPKVLEVCLPLRTAANQPIPEQTHCPAC 400

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           Q+ +V+  +           CT    C  + LE + +FVS+ A +I+GL  Q +   +++
Sbjct: 401 QAPLVQYKDE------VDQYCTNER-CDQRNLEAINYFVSKTAMDIQGLSIQTISKLYEN 453

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +R   D++ L+  +         I   G+V    L  SI + +   + R +  L
Sbjct: 454 N----LVRSVVDLYHLKEHKAAVLALELKI---GEVLFNKLISSIEQSKTKGMARLLTGL 506

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI+HVG  +A+SL K++ +                    +L+ +P VG  +A+++  ++ 
Sbjct: 507 GIKHVGQVLAKSLTKHFENIDALQSA----------SMETLLELPDVGPTVAESLFNWFH 556

Query: 618 NPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           N  N+  + AL                  +S    K  V TG+   I R   +  +    
Sbjct: 557 NDNNLQLLAALKAVGVQMDALKSNTNFDTASIYFQKSFVITGSFP-ISRDTIKNLLVN-- 613

Query: 675 AV----VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711
                  +  ++ K D ++ G      KLE+A+ L + I+NE
Sbjct: 614 -KYDCRFTNNVTSKVDFVLAGIKATPRKLEQAKALNIPIINE 654


>gi|330889906|gb|EGH22567.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. mori str.
           301020]
          Length = 787

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 221/656 (33%), Positives = 339/656 (51%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+         +       + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ AN     + YY ++   R TL Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++V  R   A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPESA 406

Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +P   P  CP+C S V       R    +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RPVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q         + GF ++S   L+
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLF 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  +          L 
Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650
            +P VG  +A  I  F+++  N   ++ALL E    +    +       S+ +E  
Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLKLQDQGELGAEFAASTTLEGL 622



 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 105/257 (40%), Gaps = 20/257 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   +++ + +   +      D    +      F     +         +   G   
Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLKL 603

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +LE  I  L I  VG   A+ LA  + + +               D
Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 653

Query: 595 WLSLIR-VPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649
           WL + + +P   +  A+++ +F+ +  +     A+EA LK+        +K V    +  
Sbjct: 654 WLDMRQTLP---EKQAKSVRDFFDDSAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ ++
Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770

Query: 710 NEEQFLFLLQQYNTTLR 726
           +E+  L  L +   T+ 
Sbjct: 771 DEDALLKRLTELGVTVD 787


>gi|154503603|ref|ZP_02040663.1| hypothetical protein RUMGNA_01427 [Ruminococcus gnavus ATCC 29149]
 gi|260589901|ref|ZP_05855814.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
 gi|153795703|gb|EDN78123.1| hypothetical protein RUMGNA_01427 [Ruminococcus gnavus ATCC 29149]
 gi|260539708|gb|EEX20277.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
 gi|291547890|emb|CBL20998.1| DNA ligase, NAD-dependent [Ruminococcus sp. SR1/5]
          Length = 671

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 186/711 (26%), Positives = 300/711 (42%), Gaps = 60/711 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +++  L   ++   + YY  + P I D+EYD +      +      +      N P   +
Sbjct: 11  EKIKQLVDYLNLQRNAYYNENSPNISDAEYDRIFDELVELEKQTGFILS----NSPTQTV 66

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G      L KV H +P LSL+K   ++DL  F  +            + F    K+DG  
Sbjct: 67  GYTPISELPKVKHPVPLLSLDKTKQVQDLISFAGK----------QPVLFM--LKLDGLT 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
             + YE G  V A+ RGDG  GE ++  I A   +P  LS+     + + GE +I  +DF
Sbjct: 115 TKLVYENGTLVEASTRGDGEIGELITHNIPAYVDVP--LSIPYKGRLVIVGESFIPTHDF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
             L + +     +PY N RN ASG +R L+P     R L+F    + +  +         
Sbjct: 173 ERLKETLRDGKGEPYKNGRNLASGSVRSLDPANCAGRCLHFMPFNVLEGLDSPFLFPDSR 232

Query: 258 LQKMRC----LGFPVNNGVRQANTFHGIVSYYNEMKSI-RSTLPYDIDGLVYKVDEFSLQ 312
             K+         P             +V+ Y E  +         IDG+V   D     
Sbjct: 233 AMKISSLFDYGFQPCPYIAANHPLTSELVNQYIERLTDLAGKKHLPIDGIVMIFDSLDYS 292

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K  G      +  ++ KF ++   T L +I+    R G + PV   +PV I G  ++ AT
Sbjct: 293 KNCGRTGHHYKDGLAFKFEDETYETTLRNIEWTPTRFGEIAPVGVFDPVEIDGCSVSRAT 352

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN  +IK L+           +  G R+ V +   +IP + + +    + DA     P 
Sbjct: 353 LHNLTFIKELE-----------LVPGCRISVSKRNMIIPHIEENLERGHYVDA----VPP 397

Query: 433 FCPICQSRVV-RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            CP C S+          G+L+    C     C +Q  +R  HFV + A NIEGL +  L
Sbjct: 398 VCPCCGSQTRIYQRKGNDGRLIETVHCDNP-NCDSQIRKRFTHFVGKKAMNIEGLSETTL 456

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F         ++   DI+ L   Q+    +I  + GFG  S   L++SI   RN +  
Sbjct: 457 EKFL----TLGYLQTFPDIYHLNEHQE----EILQLEGFGKKSFERLWNSITSSRNTTFV 508

Query: 552 RFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           RF+ S+ I  VG   +R L   +  S Q F    +              ++   GD + Q
Sbjct: 509 RFLVSMDIPMVGRTKSRILDTVFHGSLQEFFDAASGDY--------DFTQLDDFGDTLNQ 560

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQE 668
            I +++ +  N+     L KE+     +        +      +V TG L    R +   
Sbjct: 561 NIHDWFSDENNLILWHELQKELIFEERKEMNTMMKENVFTGCTIVATGKLAHFTRDEINS 620

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + +LGA   + +++KTD +I G+  GSKL KAQ LG+KI++E++FL ++ 
Sbjct: 621 KILELGAKAGSSVTKKTDYLICGEKAGSKLAKAQSLGIKILSEDEFLEMIA 671


>gi|237802575|ref|YP_002887769.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis B/Jali20/OT]
 gi|231273809|emb|CAX10593.1| NAD-dependent DNA ligase [Chlamydia trachomatis B/Jali20/OT]
          Length = 663

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 218/713 (30%), Positives = 350/713 (49%), Gaps = 71/713 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R +  +L  E+  HD  YY  ++P I D  YD   R    I    P+   S     P   
Sbjct: 6   RDDYIALCTELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSW---SPTMY 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   +     V HS P LS+  ++++++L +F +R  +        S  ++LE KIDG 
Sbjct: 63  LGDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLG----YSPGYSLELKIDGI 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + IRYEK  F  A  RG+G  GED++A +  I ++P  L    PE +EVRGEV++S   
Sbjct: 119 AVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEA 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  LN      G+  +ANPRNAA G L+ L+  +        +   G  ++   +  +E 
Sbjct: 179 FEELNACQREQGKLEFANPRNAAGGTLKLLSSKEA-AKRKLDLSVYGLITDQKKRSHFEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           LQ     GF V    +Q  +   +V    E++ +R+ LP  IDG+V KVD  + Q +LG 
Sbjct: 238 LQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDRLGL 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            ++  RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+N+D
Sbjct: 298 TSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +DIR+GD V V++ GEVIPK+V I + +R  +++P+  PS CP+C
Sbjct: 358 EIEK-----------KDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLCPVC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
              VV++          + RC   L       +    F S+ A NI+ LG++ +   F+ 
Sbjct: 407 HEPVVKEK--------VSVRCINPLCSGGMLEKIC-FFASKSALNIDHLGEKVVTKLFE- 456

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I   +DIF L  +          + GF D S+ NL  SI   + ++L+R + +L
Sbjct: 457 ---VGLISSCSDIFALTEKDLK------QVPGFKDRSIQNLLASIAGAKKVTLDRLLTAL 507

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  VG+  A +LA ++ +     +               L+ +  +G  +A +IV F+ 
Sbjct: 508 SIPFVGSSGAIALADHFGTLDKVIEA----------SLDELMSIEGIGPKVAASIVAFFS 557

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL---- 673
              N   +   ++E+   +   + +  + ++ K  V TGTLQ++ R +A+E +  L    
Sbjct: 558 KHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLGGKV 616

Query: 674 -------GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
                             T  +I G   G KL+KAQ LG+ I NE + L +L 
Sbjct: 617 SSSVSKS-----------TYAVIAGSEAGGKLKKAQDLGLSIWNESELLIILD 658


>gi|301633469|gb|ADK87023.1| DNA ligase (NAD(+)) [Mycoplasma pneumoniae FH]
          Length = 658

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 198/702 (28%), Positives = 342/702 (48%), Gaps = 61/702 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            ++ ++ +++  +D  YY    P++ D EYD L ++  A+  A P+L +   P+ P  ++
Sbjct: 5   AQIRAIVEQLKRYDYHYYVLDDPLVSDFEYDQLYKQLQALEQAHPELIQ---PDSPTQRV 61

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +  +  K  H  P LSL+  ++   +  FI  I      ++     F +EPKIDG  
Sbjct: 62  GGIVVEAFNKFPHQNPMLSLDNAFDTATIASFIANINNLTGVQN----RFVVEPKIDGVS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE G    A  RGDG  GEDV + ++ I +IP  L++   + +E+RGE+++ K  F
Sbjct: 118 ISLTYENGLLTRALTRGDGLVGEDVLSNVKTIKSIP--LTIPFHKQVEIRGEIFVDKKTF 175

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEM 257
             +N+ +     KP+AN RN A+G LR LN      R L  F + +     +  + Q  +
Sbjct: 176 AQINENL----AKPFANARNLAAGTLRNLNSEVSAKRKLKAFFYFVPNALTLGCRSQSAV 231

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L +++   FPV+  V   +    ++ Y ++    R  L + +DGLV K+D F    QLG 
Sbjct: 232 LAQLKQWNFPVSKAVASFDRPEALIEYLDQFDQTRDQLNFQVDGLVVKLDNFHFYDQLGF 291

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            ++ PRW +++KF  K   T+L  + + +GRTG +   A+L+PVN+ G +++ ATLHN D
Sbjct: 292 TSKFPRWALAYKFKPKFVQTKLRGVLVTVGRTGKINYTAQLDPVNLEGTVVSAATLHNFD 351

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           YIK            +DIR+ D V++ +AGE+IPKV+++ +  R    QP    + CP C
Sbjct: 352 YIK-----------EKDIRLNDTVIIYKAGEIIPKVLEVCLPLRTAANQPIPEQTHCPAC 400

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           Q+ +V+  +           CT    C  + LE + +FVS+ A +I+GL  Q +   +++
Sbjct: 401 QAPLVQYKDE------VDQYCTNER-CDQRNLEAINYFVSKTAMDIQGLSIQTISKLYEN 453

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +R   D++ L+  +         I   G+V    L  SI + +   + R +  L
Sbjct: 454 N----LVRSVVDLYHLKEHKAAVLALELKI---GEVLFNKLISSIEQSKTKGMARLLTGL 506

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI+HVG  +A+SL K++ +                    +L+ +P VG  +A+++  ++ 
Sbjct: 507 GIKHVGQVLAKSLTKHFENIDALQSA----------SMETLLELPDVGPTVAESLFNWFH 556

Query: 618 NPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           N  N+  + AL                  +S    K  V TG+   I R   +  +    
Sbjct: 557 NDNNLQLLAALKAVGVQMDALKSNTNFDTASIYFQKSFVITGSFP-ISRDTIKNLLAN-- 613

Query: 675 AV----VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711
                  +  ++ K D ++ G      KLE+A+ L + I+NE
Sbjct: 614 -KYDCRFTNNVTSKVDFVLAGIKATPRKLEQAKALNIPIINE 654


>gi|227498227|ref|ZP_03928396.1| DNA ligase (NAD(+)) [Actinomyces urogenitalis DSM 15434]
 gi|226832370|gb|EEH64753.1| DNA ligase (NAD(+)) [Actinomyces urogenitalis DSM 15434]
          Length = 827

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 207/822 (25%), Positives = 339/822 (41%), Gaps = 125/822 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQ--YSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
            ++AR+    L + +      YY    ++    D+ YDAL R  + +  A+P L     P
Sbjct: 27  PQEARRRWEELAELVERARAAYYDALDAESTTSDAAYDALYRELEDLEAAWPQL---RVP 83

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P   +GG    +   VTH+    SL+ ++++E+++++  R+        D S+  T E
Sbjct: 84  HSPTRSVGGGRAQAFSPVTHAERMYSLQDVFSLEEVQEWAERVCADLG-VADASLPMTAE 142

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190
            KIDG  + + Y  G    AA RGDG +GEDV+A +R I ++P  LS +  P +IEVRGE
Sbjct: 143 VKIDGLAVALTYTDGVLTRAATRGDGTTGEDVTANVRTIASVPHRLSGDQVPSLIEVRGE 202

Query: 191 VYISKNDFLALNDEMIAVGRKP------------------------YANPRNAASGILRR 226
           VY     F   N E      +                         +ANPRNAA+G LR+
Sbjct: 203 VYFPVEAFARFNRERQEDNARREARNRALEEQGGGKRVRKEAMLQVFANPRNAAAGSLRQ 262

Query: 227 LNPT-DITRYLNFFVHGLG----KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI 281
            +P    +R L F  HG+G       E     Q+E  + +   G PV+            
Sbjct: 263 KDPAITASRPLAFIAHGIGAYTPAPGEQLPALQHEWYELLAGWGLPVSPYNALVVGRAER 322

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341
            +Y       R  L ++IDG+V+K+D    Q +LG  +R PRW  ++K+  ++  TRLLD
Sbjct: 323 EAYIERYAEHRHDLIHEIDGIVFKIDARDQQGRLGYTSRVPRWATAYKYPPEEVHTRLLD 382

Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401
           ID+Q+GRTG +TP   +EPV + G+ +  ATLHN + +             + +R+GD V
Sbjct: 383 IDVQVGRTGRVTPFGIMEPVLVAGSTVARATLHNAEEVTR-----------KGVRIGDLV 431

Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461
           ++++AG+VIP++V  +V  R    + F  P+ CP C + +         +     RC   
Sbjct: 432 VLRKAGDVIPEIVGPVVEARDGSERVFVMPAACPSCGTPLA-----PAKEGDVDLRCPNT 486

Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS-----------------EDPAFSI 504
            +C AQ  ER+ H  SR A ++EGLG +      +                  E     I
Sbjct: 487 RSCPAQVTERVAHVGSRGALDVEGLGDEAAAALTQPDAGQEEALAALAAGRYLETERGRI 546

Query: 505 R-IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS---INKRRNISLERFIFSLGIR 560
           R    D+ +L   Q+    +              L           +   E F++    R
Sbjct: 547 RLRTKDLESLAPAQRLGLARTYLEEHGIGEQEPVLTGEAGLFELSEDDLAEVFVYQSVRR 606

Query: 561 HVGAEIARSLAKYYLSYQNF-------------AQEINNIIAHNNDDWLSL------IRV 601
              A     LA+++ + Q +                   +          L      + V
Sbjct: 607 RGEATGDWRLARFFWTKQTYTPDGDVKKASVPGKNATAVLAQLEAAKAQPLWRVLVALSV 666

Query: 602 PLVGDIIAQAIV--------------------------------EFYQNPRNICAVEALL 629
             VG   A+A+                                 E+ +   +   ++   
Sbjct: 667 RHVGPTAARALAARFGSLEALRQASLDELSQVDGVGPTIAAAWQEWLEVDWHREILDRWA 726

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
                +           +    +V TGTL+   R  A+E +   G   +  +S++T  ++
Sbjct: 727 AAGVRTQDEVTTTAPQTLAGLSVVVTGTLEHFTREGAKEAIVARGGKAAGSVSKRTSYVV 786

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
           VG N GSK  KA++LGV +++EE F  LL ++        +D
Sbjct: 787 VGANAGSKETKARELGVPVLDEEGFRALL-EHGPAADPEQED 827


>gi|226945096|ref|YP_002800169.1| NAD-dependent DNA ligase LigA [Azotobacter vinelandii DJ]
 gi|254781546|sp|C1DN27|DNLJ_AZOVD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226720023|gb|ACO79194.1| DNA ligase, NAD-dependent [Azotobacter vinelandii DJ]
          Length = 784

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 226/684 (33%), Positives = 350/684 (51%), Gaps = 65/684 (9%)

Query: 12  LSIEQ-ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ++  Q A + ++ L  EI  H+  YY    P + D+EYD L     A+    P+L     
Sbjct: 1   MTDAQTAAERIARLRSEIDEHNYRYYVLDAPSVPDAEYDRLFNELKALEAEHPELV---T 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P  P  ++GGE   +  +V H +P LSL   +  EDL  F   + +   +     + ++ 
Sbjct: 58  PESPTQRVGGEALAAFGQVRHELPMLSLGNAFAEEDLLDFDRNVCKGLDR-GIEVVEYSC 116

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189
           EPK+DG  +++ YE G+ V  A RGDG +GED++A +R +  IP  L     P ++EVRG
Sbjct: 117 EPKLDGLAVSLLYEDGQLVRGATRGDGSTGEDITANVRTVRNIPLRLHGQGWPAVLEVRG 176

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTS 247
           E+Y+ +  F ALN   I  G K +ANPRNAA+G LR+L+P     R L F  +G+G    
Sbjct: 177 EIYMPRAGFEALNARAIENGGKTFANPRNAAAGSLRQLDPKITAGRPLEFCGYGIGRFEG 236

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               +    +L+ +R  G P++  ++ A +    ++YY  +   R  L YDIDG+V+KV+
Sbjct: 237 AEVPQTHTSLLETLRRWGLPISRELQLARSVQDCLAYYRAIGERRQGLAYDIDGVVFKVN 296

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
               Q++LG RAR+P W I++KF  ++  T LL ++ Q+GRTG +TPVARL+PV + G  
Sbjct: 297 RLDWQRELGFRARTPHWAIAYKFPAQEELTELLGVEFQVGRTGAITPVARLKPVQVAGVT 356

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NA+LHN D +  L            + +GD V+V+RAG+VIP+++ ++   R  DA+P
Sbjct: 357 VSNASLHNMDEVARL-----------GVMIGDTVIVRRAGDVIPQIMQVVGERRPADARP 405

Query: 428 FSFPSFCPICQSRVVRDLNPKTGK------LVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              P  CP+C S V R    K GK        A +RC G LAC AQ  + + HFVSR A 
Sbjct: 406 VEVPRQCPVCGSAVERTQLVKRGKGRASLSEGAIYRCVGRLACQAQLKQAIVHFVSRRAM 465

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I+GLG++ ++    +      ++ PAD++ L   Q         + GF +VS  NL  +
Sbjct: 466 DIDGLGERIVEQLVDT----GLVKSPADLYILTFEQLV------VLDGFAEVSSNNLLAA 515

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I   R  SL RFI++LGI  VG E A+ LA+   S     + +  +          LI +
Sbjct: 516 IAASRRPSLARFIYALGIPDVGEETAKRLARALGSLTRIEKALPEV----------LIWL 565

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-------SEIENK---- 650
           P VG  +A  I  F+++  N+  +  LL          E +          E+ +K    
Sbjct: 566 PDVGLEVAHEIHSFFRDEHNLTVIGQLLARGVELQEEGELHAEFAACASLGELLDKLDIP 625

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLG 674
            +  TG         A++     G
Sbjct: 626 GIAATG---------AKKLAEAAG 640



 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 12/212 (5%)

Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575
           R + + T I  +L  G                 SL   +  L I  + A  A+ LA+   
Sbjct: 581 RDEHNLTVIGQLLARGVELQEEGELHAEFAACASLGELLDKLDIPGIAATGAKKLAEAAG 640

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEV 632
           S +               DWL+L     + +   QA+ EF+  P N+    A+E  L+E 
Sbjct: 641 SLEAVIGLSQ--------DWLTLNTTKGLSEKARQALREFFAVPANVEHARAIEGQLREF 692

Query: 633 SPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                   +      +  +  V TGTL+ + R + +  +  LGA V+  +S KT  ++ G
Sbjct: 693 GMHWESERRCAEGLPLAGQTWVLTGTLESMSREQGKARLESLGAKVAGSVSAKTACVVAG 752

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
              GSKL KA +LGVK+++EE FL LL+Q  +
Sbjct: 753 PGAGSKLAKAGELGVKVLDEEAFLALLRQLES 784


>gi|255283571|ref|ZP_05348126.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469]
 gi|255265833|gb|EET59038.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469]
          Length = 667

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 189/717 (26%), Positives = 313/717 (43%), Gaps = 61/717 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQ    +  L Q ++ H + YY  + P I D EYD L     A+               
Sbjct: 1   MEQKITRMKQLIQNLNKHRNAYYNLNAPTITDQEYDRLYDELAALEKE----TGVILSYS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G     SL KVTH    LSL+K   + ++   +TR                   K
Sbjct: 57  PTQTVGYYPVSSLAKVTHPHRLLSLDKTKQVSEICALLTRNPALL------------MLK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG    + YE GK + A+ RGDG +GED++  I A   +P  L++   + + + GE YI
Sbjct: 105 LDGLTTKLVYENGKLLQASTRGDGETGEDITHNIPAYRNVP--LTIPYTKRLVITGESYI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252
             +DFL L D +     KPY N RN A+G +R LNP     R + F    + +  E    
Sbjct: 163 HADDFLRLKDTLFDSSGKPYRNARNLAAGSVRSLNPEKCAPRCVYFSPFHVLEGLEEIPH 222

Query: 253 GQYEMLQK-----MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                L+            P         +   +     +++   +     IDG+V   D
Sbjct: 223 SDSRKLRLSSLKPFGFDICPYIALTDPVPSQEQVQEAIEQLRKEATEKQIPIDGIVAIFD 282

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             S  K  G      +  +++KF ++Q  T L DI+    R+G + PV   + V I G  
Sbjct: 283 SLSYSKSCGSTGHHYKDGLAYKFEDEQYETVLRDIEWTPTRSGEIAPVGVFDTVEIDGCK 342

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A+LHN  +IKGL+           +  G R+LV +   +IP + + +   R+ D   
Sbjct: 343 VSRASLHNLTFIKGLE-----------LVPGCRILVSKRNMIIPHIEENLDRGRYHD--- 388

Query: 428 FSFPSFCPICQSRVV-RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              P  CP C S+          G+++    C G  +C  Q L + +HF  + A NIEGL
Sbjct: 389 -IVPPLCPCCSSKTWICRKKASDGRIIETVHC-GNPSCDTQILRKYEHFTGKKAMNIEGL 446

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
               L+ F         I    D++ L R ++    +I  + GFG+ S   L+DSI K R
Sbjct: 447 SSATLERFLD----LGYIMSFQDLYHLDRYRE----QILQLEGFGEKSFDRLWDSIQKSR 498

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +    R++ ++ I  +G   +R L + +  S  +F        A  + D+ +L      G
Sbjct: 499 HTDFVRYLVAMDIPMIGRTKSRILNEIFQGSLDDFEAA-----AAGDYDFSTL---EDFG 550

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH---EKNVSSEIENKKLVFTGTLQKIQ 662
           +I+   I  ++ +  N+   + L KE +         ++   +    + +V TG L+   
Sbjct: 551 EILNHNIHSWFSDEENLHLWKELQKEFTFESKEENTMKETRENPFRGRTVVATGKLEHFT 610

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R      + +LG    + +++KTD +I G+  GSKL KAQ+LG+ ++ E++FL ++ 
Sbjct: 611 RDGINTKILELGGKPGSSVTKKTDYLICGEKAGSKLSKAQELGIPVLTEQEFLDMIA 667


>gi|76788861|ref|YP_327947.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis A/HAR-13]
 gi|123731251|sp|Q3KMM3|DNLJ_CHLTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76167391|gb|AAX50399.1| NAD-dependent DNA ligase [Chlamydia trachomatis A/HAR-13]
          Length = 663

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 219/713 (30%), Positives = 351/713 (49%), Gaps = 71/713 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R +  +L  E+  HD CYY  ++P I D  YD   R    I    P+   S     P   
Sbjct: 6   RDDYIALCTELVEHDRCYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSW---SPTMY 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   +     V HS P LS+  ++++++L +F +R  +        S  ++LE KIDG 
Sbjct: 63  LGDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLG----YSPGYSLELKIDGI 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + IRYEK  F  A  RG+G  GED++A +  I ++P  L    PE +EVRGEV++S   
Sbjct: 119 AVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEA 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  LN      G+  +ANPRNAA G L+ L+  +        +   G  ++   +  +E 
Sbjct: 179 FEELNACQREQGKLEFANPRNAAGGTLKLLSSKEA-AKRKLDLSVYGLITDQKKRSHFEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           LQ     GF V    +Q  +   +V    E++ +R+ LP  IDG+V KVD  + Q +LG 
Sbjct: 238 LQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDRLGL 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            ++  RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+N+D
Sbjct: 298 TSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +DIR+GD V V++ GEVIPK+V I + +R  +++P+  PS CP+C
Sbjct: 358 EIEK-----------KDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLCPVC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
              VV++          + RC   L       +    F S+ A NI+ LG++ +   F+ 
Sbjct: 407 HEPVVKEK--------VSVRCINPLCSGGMLEKIC-FFASKSALNIDHLGEKVVTKLFE- 456

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I   +DIF L             + GF D S+ NL  SI   + ++L+R + +L
Sbjct: 457 ---VGLISSCSDIFALTEEDLK------QVPGFKDRSIQNLLASIAGAKKVALDRLLTAL 507

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  VG+  A +LA ++++     +               L+ +  +G  +A +IV F+ 
Sbjct: 508 SIPFVGSSGAIALADHFVTLDKVIEA----------SLDELMSIEGIGPKVAASIVAFFS 557

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL---- 673
              N   +   ++E+   +   + +  + ++ K  V TGTLQ++ R +A+E +  L    
Sbjct: 558 KHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLGGKV 616

Query: 674 -------GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
                             T  +I G   G KL+KAQ LG+ I NE + L +L 
Sbjct: 617 SSSVSKS-----------TYAVIAGSEAGGKLKKAQDLGLSIWNESELLRILD 658


>gi|225419696|ref|ZP_03761999.1| hypothetical protein CLOSTASPAR_06034 [Clostridium asparagiforme
           DSM 15981]
 gi|225041660|gb|EEG51906.1| hypothetical protein CLOSTASPAR_06034 [Clostridium asparagiforme
           DSM 15981]
          Length = 654

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 192/711 (27%), Positives = 311/711 (43%), Gaps = 65/711 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   + +  L   +S     YYQ S+ I+ + EYD L     A+               
Sbjct: 1   MEDRIERMKELVSLLSKAGKAYYQESREIMSNFEYDRLYDELTALERE----TGVTLSGS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E+   L K TH  P LSL+K  ++EDL+ ++                     K
Sbjct: 57  PTKRVGYEVLSELPKETHESPMLSLDKTKSVEDLQAWLGDQKGLL------------SWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + Y+ G  V A  RG+G  GE ++   R    IP  L++    ++ +RGE  I
Sbjct: 105 MDGLTIVLTYDGGTLVKAVTRGNGEIGEVITPNARVFANIP--LNIAHKGLVVLRGEAVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAK 252
             +DF  +N+E+  V    Y NPRN  SG +R+LN      R ++F    L +   +  +
Sbjct: 163 LYSDFRRINEEIEDV-DAKYKNPRNLCSGSVRQLNSQITAERNVHFEAFSLVRAEGVDFE 221

Query: 253 G-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             +    + ++  GF V +                E            DGLV   D+ + 
Sbjct: 222 NSRKRQFEWLKSQGFEVVDYREVTAETL--PQAVQEFADAVEGYDIPSDGLVLLFDDIAY 279

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            + LG  A+ PR  I+ K+ ++   T++  I+    RTG++ PVA  EPV + G  ++ A
Sbjct: 280 GESLGRTAKFPRNSIAFKWQDEIRETKMRYIEWSPSRTGLINPVAVFEPVELEGTTVSRA 339

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           ++HN   ++GL+           +   DR+ V +A  +IP++ D +             P
Sbjct: 340 SVHNISILEGLE-----------LGEEDRITVYKANMIIPQIADNLTRSGVKH-----IP 383

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C                          C A++++     VSRDA NI+GL +  L
Sbjct: 384 EQCPVCGGAT-----EIRQVNDVRSLYCINPDCQAKKIKSFTLLVSRDALNIDGLSEATL 438

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F      A  I   ADIF L R Q+     I  + GFG  S  NL  S+ K  + +L 
Sbjct: 439 EKFI----GAGFIHEYADIFHLDRHQE----AIVEMEGFGQKSYDNLVASVAKAADTALP 490

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R I+ LGI  +G   A++L +++                   D   L+ V  +G ++A+A
Sbjct: 491 RVIYGLGIAGIGLANAKALCRHFG---------YEFENMRKADEEELVAVDGIGAVLAKA 541

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670
            +E++ +  N  AV+ L  E++      E+        K  V TG+L+    R + QE +
Sbjct: 542 WMEYFSSEANNEAVDHLFAELTIEKEVVEE-TEQIFAGKTFVITGSLEHFGNRKELQELI 600

Query: 671 TQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G   +  +S KT  +I  D  +P SK +KA+ LGV I+ EE+FL +L+
Sbjct: 601 ESKGGKAAGSVSAKTSYLINNDSLSPSSKNKKAKDLGVPIITEEEFLRMLE 651


>gi|312962450|ref|ZP_07776941.1| DNA ligase [Pseudomonas fluorescens WH6]
 gi|311283377|gb|EFQ61967.1| DNA ligase [Pseudomonas fluorescens WH6]
          Length = 789

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 210/631 (33%), Positives = 333/631 (52%), Gaps = 48/631 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +  A   +  L  E+  H+  Y+   +P I D+EYD L     A+    P+L      + 
Sbjct: 1   MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPELVTR---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H IP LSL   ++   + +F  R+                ++ 
Sbjct: 58  PTQRVGSAALSAFTQVRHEIPMLSLGNAFDETTMLEFDRRVTEGLDLPVGDLFGGGAAVE 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y+ G+ V  A RGDG +GED+S  +R +  IP  L     P  +E
Sbjct: 118 YSCEPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLHGTGWPATLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+     +R L F  +G+G+
Sbjct: 178 VRGEVFMSKAGFERLNASQLDVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGIGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            +   +      L++++  G P+++ ++ A      + YY ++ + R++LPY+IDG+V+K
Sbjct: 238 VTADISDTHIGNLKQLQQWGMPISHELKLAKGIQECLDYYRDIGARRNSLPYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNSIASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R   A
Sbjct: 358 VTVSNATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVSVVTERRPEHA 406

Query: 426 QPFSFPSFCPICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S       V R    +T    A +RC G LAC AQ  + + HFVSR 
Sbjct: 407 RAVQIPESCPVCGSHVERTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +I+GLG + ++     +     I  PAD++ L+  Q         + GF D+S   L 
Sbjct: 467 AMDIDGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFADISSKKLI 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   +  +L RFI++LGI  VG E A+ LA+   S +   + +  +          L 
Sbjct: 517 TAIEHSKAPTLARFIYALGIPDVGEETAKVLARSLASLERVRKALPEV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
            +P VG  +A  I  F+++  N   + ALL 
Sbjct: 567 YLPDVGLEVAHEIHSFFEDSHNQQVIGALLS 597



 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 104/257 (40%), Gaps = 18/257 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   ++E + K   +      D    +      F      Q     + +        
Sbjct: 546 VLARSLASLERVRKALPEVLTYLPDVGLEVAHEIHSFFEDSHNQQVIGALLSPDECALQL 605

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                 S     + +L   +  L +  VG   A+ LA  + S +   +           D
Sbjct: 606 QDQGELSAEFAASTTLGGLLDKLHVPSVGPGAAQKLADKFTSLEGVIKA----------D 655

Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649
           WL +   +P   +  A+A+ +F+ N  N     A+E  LK+        +K V       
Sbjct: 656 WLDMRQALP---EKQAKAVRDFFDNADNANRALAIEQQLKDFGMHWQSEKKVVEGLPEAG 712

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
              V TG+L+ + R  A+E +  LGA V+  +S KT  ++ G   GSKL KA +LG+K++
Sbjct: 713 HTWVLTGSLELMSRDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVL 772

Query: 710 NEEQFLFLLQQYNTTLR 726
           +EE F+  L ++N  + 
Sbjct: 773 DEEAFVAFLAKHNIPID 789


>gi|160947381|ref|ZP_02094548.1| hypothetical protein PEPMIC_01315 [Parvimonas micra ATCC 33270]
 gi|158446515|gb|EDP23510.1| hypothetical protein PEPMIC_01315 [Parvimonas micra ATCC 33270]
          Length = 662

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 203/707 (28%), Positives = 363/707 (51%), Gaps = 57/707 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            ++  + ++++     YY   +P + D+EYD L      +            PN P  ++
Sbjct: 2   DKMKEIVEKLNLWAYQYYTLDEPSVSDAEYDKLYDELLKLEKE----TGVILPNSPTQRV 57

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NSIFFTLEPK 133
           GGE+     K TH     SL+K  + E+L++F  R  +   + +       ++ + +E K
Sbjct: 58  GGEVLEKFEKHTHLKELYSLQKAQSFEELKEFHNRCTKLLNEYNSINNSKKTLEYYVEFK 117

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  I + Y+KG  V A+ RG+G  GE+V   ++ I +IP  L ++   ++E++GE  +
Sbjct: 118 FDGLTINLTYDKGILVSASTRGNGVYGEEVFEQVKTIKSIP--LEIDYKGLVEIQGEAIM 175

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
             +     N+        P  N RNAA+G +R L+P    +R L+ F++ +G  S+   K
Sbjct: 176 PLSALTKFNETA----EVPLKNARNAAAGAIRNLDPKKTASRNLDAFIYNVGFKSDEQFK 231

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q EM+  ++   F VN   ++      I     E+  +R  + Y  DG+V KV++F L+
Sbjct: 232 TQKEMISFLKENKFKVNEYEKKCLNLKEIKDKIREIDVLRKKVDYLTDGVVIKVNDFELR 291

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +  G   + PR+ I++KF  ++ ST L ++   +GRTG +TP A LEPV IG   +  AT
Sbjct: 292 EFFGYTNKFPRFAIAYKFEAEEYSTILKEVVWNVGRTGKVTPTAILEPVEIGDVTVQRAT 351

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L+N D I             + +++  RVL++R+ +VIP+++  +  + + +      P+
Sbjct: 352 LNNYDDI-----------LRKKVKINSRVLIRRSNDVIPEILGTMDED-NGNEIEIKMPT 399

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S ++RD             CT  LAC+ Q    L HF S++A NIEGL ++ ++
Sbjct: 400 HCPYCNSELIRD--------GVHFFCTNTLACTPQLTSSLVHFSSKNAMNIEGLSEKTIE 451

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             F        +     I+ L+  +  +      +  F D  V NL +SI + + ++LE 
Sbjct: 452 SLFDK----LGVDKVYKIYDLKYDELIT------LEKFKDKKVNNLLNSIEESKKVNLEN 501

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI++LGI++VG + A+ LAK Y++  N  +               L+++  VGD++A +I
Sbjct: 502 FIYALGIKNVGIKTAKDLAKKYINLDNLRETT----------VEELLQINDVGDVVANSI 551

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            EF+ +  +  A+  LL++    +  +++   SE  +KK+V TGT +  +R   ++  +Q
Sbjct: 552 FEFFNDEYSKDALNKLLEKG-IEVIPYKEISKSEFTDKKIVITGTFKNYKRKDLEDIFSQ 610

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G +V + +++ TD ++VG+  GSKL+KAQ+LG+ I++E+     L+
Sbjct: 611 NGLIVQSAVAKSTDFLVVGEKAGSKLKKAQELGINIISEKNLEEFLK 657


>gi|289626390|ref|ZP_06459344.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|330866315|gb|EGH01024.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 787

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 220/656 (33%), Positives = 336/656 (51%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  YY   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDEHNYRYYVLDEPSIPDVEYDRLFHELKALEVENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+         +       + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  +  AN     + YY ++   R TL Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELNLANGVEECLDYYRDIGERRLTLNYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V       R    +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q         + GF ++S   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  +          L 
Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650
            +P VG  +A  I  F+++  N   ++ALL E    +    +       S+ +E  
Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622



 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 99/256 (38%), Gaps = 18/256 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   +++ + +   +      D    +      F     +         +   G   
Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLQL 603

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +LE  I  L I  VG   A+ LA  + + +         + H    
Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISADWLDMRHTLP- 662

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENK 650
                      +  A+++ +F+ +  +     A+EA LK+        +K V    +  +
Sbjct: 663 -----------EKQAKSVRDFFDDSAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQ 711

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++
Sbjct: 712 TWVLTGSLERMSRDVAKEKLETLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLD 771

Query: 711 EEQFLFLLQQYNTTLR 726
           E+  L  L +    + 
Sbjct: 772 EDALLKRLTELGVAVD 787


>gi|294786747|ref|ZP_06752001.1| DNA ligase, NAD-dependent [Parascardovia denticolens F0305]
 gi|315226368|ref|ZP_07868156.1| DNA ligase [Parascardovia denticolens DSM 10105]
 gi|294485580|gb|EFG33214.1| DNA ligase, NAD-dependent [Parascardovia denticolens F0305]
 gi|315120500|gb|EFT83632.1| DNA ligase [Parascardovia denticolens DSM 10105]
          Length = 868

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 211/812 (25%), Positives = 355/812 (43%), Gaps = 113/812 (13%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           +K   I + AL ++ A +  + +   +      YY    P+  DS YD        +   
Sbjct: 44  QKMGKIDLVALPVDLAARLWAKVASWVEDDQIAYYVNDSPVSSDSAYDQRMLTLQRLEAQ 103

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP L   ++P  P +++GG  +    +V H    LSL+ ++++E+L+ +   + R    K
Sbjct: 104 FPAL---DNPQSPTHRVGGTFSNDFTEVRHPSRMLSLDDVFSLEELKDWYQSLVRDLDWK 160

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
             + +  T E KIDG  + + Y  G       RGDG +GED++  +R I  IP  L+ + 
Sbjct: 161 AGDPLPMTSEVKIDGLALNLVYRHGVLEQGLTRGDGVTGEDITMNVRTIAGIPSQLAGDP 220

Query: 182 ---PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237
              P+++E+RGEV++  +DF  LND+  A G+  +ANPRNAA+G LR+ +P     R L+
Sbjct: 221 ADIPDLVEIRGEVFMRFDDFRKLNDQAQAEGKPTFANPRNAAAGSLRQKDPRITARRRLS 280

Query: 238 FFVHGLGK--------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289
           F+ HGLG               + Q +     R    P +   R  N++  I+   +   
Sbjct: 281 FYAHGLGILEWGPQAAVRHPDIERQSQAYDLYRTWRIPTSPHNRLVNSYVEILDMISYYG 340

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
             R  + + +DG+V KVD+ +LQ++LG  AR+PRW I++K+  ++ +T LLDI +Q+GRT
Sbjct: 341 DHRYDIEHPLDGIVVKVDQLALQRRLGATARAPRWAIAYKYPPEEVNTDLLDIRVQVGRT 400

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G +TPVA L PV + G+ +   TLHN   +K            + I +GD V+V++AG+V
Sbjct: 401 GRVTPVAHLRPVQVAGSTVARTTLHNPSEVK-----------HKGILIGDLVVVRKAGDV 449

Query: 410 IPKVVDIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA 466
           IP++V  ++  R       + F  P  CP C + +  +      +     RC    +C A
Sbjct: 450 IPELVGPVLAARPEREGRLREFVMPDRCPSCGTELAPE-----KEGDKDWRCPNVESCPA 504

Query: 467 QQLERLKHFVSRDAFNIEGLGKQ------------------------------------- 489
           Q   R+ H  SR AF+IE LG+Q                                     
Sbjct: 505 QLANRVLHLASRQAFDIEHLGEQSALALTNPENNRPDSVDEYLPDIKEILIEEGEEPPVY 564

Query: 490 -QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL--GFGDVSVTNLYDSINKRR 546
              +      +    ++  AD+F L+     S      I      + +  +       R+
Sbjct: 565 LPAEGLRLPPEQKPVVQSEADLFALRPEDLRSVRTWREIPLVEISERTDPDTGKKKRIRK 624

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR--VPLV 604
           N         +       +  +SLA+   S    A       A   D W  L+   +  V
Sbjct: 625 NRGGSGLWTQVPAFFNLPKKGQSLAETQPSKTTLAMFEEFDKARQADLWRVLVALSIRHV 684

Query: 605 GDIIAQAIVEFY--------QNPRNICAVEALLKEVSPSI-------------------- 636
           G   A+ I + +         +   + +++A+  E++ S+                    
Sbjct: 685 GAPTARLIAKHFKTLTAISQASEEELTSIDAIGDEIAKSVYQWFREAQDPSSWRGQILAA 744

Query: 637 ---------GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
                              +  K +V TGTL+   R  A+E +   G   +  +S+KT  
Sbjct: 745 WAQAGIGRKAAETVTDEQTLAGKTVVVTGTLEDFSRESAKEAIESRGGKAAGSVSKKTSY 804

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++VG N GSK  KA+ LG+ +++E+QF  LL+
Sbjct: 805 VVVGANAGSKASKAEALGIPMLDEDQFKTLLE 836


>gi|331013366|gb|EGH93422.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 787

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 219/656 (33%), Positives = 337/656 (51%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+         +       + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEESDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVCGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  ++ AN     + YY ++   R TL Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V       R    +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q         + GF ++S   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  +          L 
Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650
            +P VG  +A  I  F+++  N   ++ALL E    +    +       S+ +E  
Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLKLQDQGELGAEFAASTTLEGL 622



 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 105/257 (40%), Gaps = 20/257 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   +++ + +   +      D    +      F     +         +   G   
Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLKL 603

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +LE  I  L I  VG   A+ LA  + + +               D
Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 653

Query: 595 WLSLIR-VPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649
           WL + + +P   +  A+++ +F+ +  +     A+EA LK+        +K V    +  
Sbjct: 654 WLDMRQTLP---EKQAKSVRDFFDDSAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 710

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ ++
Sbjct: 711 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 770

Query: 710 NEEQFLFLLQQYNTTLR 726
           +E+  L  L +   T+ 
Sbjct: 771 DEDALLKRLTELGVTVD 787


>gi|160895209|ref|ZP_02075981.1| hypothetical protein CLOL250_02768 [Clostridium sp. L2-50]
 gi|156863088|gb|EDO56519.1| hypothetical protein CLOL250_02768 [Clostridium sp. L2-50]
          Length = 653

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 178/706 (25%), Positives = 314/706 (44%), Gaps = 62/706 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + R  +  L ++++     YYQ    I+ + EYDAL      +             N P 
Sbjct: 2   EKRDRIKELVEKLNEASKKYYQEDTEIMSNLEYDALYDELVELEKE----TGIVMSNSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +G E+   L K  H  P LSL+K  ++E L  ++             +    +  K+D
Sbjct: 58  VHVGYEIVSELPKEVHEHPMLSLDKTKSVEALAAWL------------GTHQGVISWKLD 105

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + YE G  V A  RG+G  GE ++   R    IP    +     + +RGE  I  
Sbjct: 106 GLTVVLTYENGTLVKAVTRGNGLEGEVITNNARVFANIP--KEIPYKGKLTIRGEAVIKY 163

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRR-LNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
           +DF  +N+  IA     Y NPRN  SG +R+  N     R ++FF   L    ++  K  
Sbjct: 164 SDFEKINE-QIADADAKYKNPRNLCSGSVRQLNNRITKERNVHFFAFNLVDGEDVDFKNS 222

Query: 255 YEML-QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           +      +   GF V            +     +         +  DGLV  +++ +  K
Sbjct: 223 FSYELDWLEQQGFDVVEHY--LIDADKLPERVAQFAEQIEKNDFPSDGLVLVLEDLAYGK 280

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+ PR  ++ K+A++QA T L  ++    RTG++ PVA  +PV++ G  +  A++
Sbjct: 281 SLGRTAKFPRDSMAFKWADEQAVTHLQYVEWSPSRTGLINPVAVFDPVSLEGTTVGRASI 340

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN   ++ L            + +GD + V +A  +IP++ +         +     P  
Sbjct: 341 HNVSILRSLQ-----------LGIGDEISVYKANMIIPQIAENHTR-----SGNVPIPES 384

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C   + + +    G             C A++L+   HFVSR+A NI+GL +  +D 
Sbjct: 385 CPACG-GLTKIVTEGEGVDQVETLYCTNEFCPAKKLKSFAHFVSRNAMNIDGLSEATIDK 443

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F +       +    D++ + R ++    +I  + GFG+ S   L  +++  R+ ++ RF
Sbjct: 444 FIEQ----GYLDHLDDLYHMNRHEE----EIVELEGFGEKSYAKLIQAVDTSRHTTMNRF 495

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           ++ LGI  VG   A+ + K++ +         N+    + D  +   +  +G +IA+ IV
Sbjct: 496 VYGLGIPGVGDATAKLICKHFKN---------NLDQIMHADVEAYTEIDGIGTVIAEEIV 546

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQ 672
            +++NP N   ++ LL E+        + V   +     V TG+L++   R + ++Y+  
Sbjct: 547 RYFKNPSNCAIIDKLLHEL--EFEAETETVPQTLAGITFVITGSLEQFANRDEMKQYIED 604

Query: 673 LGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716
            G  V+  +S KT  ++  D  +  SK +KAQ LG+ I++E QFL 
Sbjct: 605 RGGKVAGSVSSKTGYLVNNDVTSTSSKNKKAQSLGIPIISETQFLE 650


>gi|289649545|ref|ZP_06480888.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 787

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 219/656 (33%), Positives = 336/656 (51%), Gaps = 53/656 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEVENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+         +       + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV+  +  AN     + YY ++   R TL Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSRELNLANGVEECLDYYRDIGERRLTLNYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 358 VMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENA 406

Query: 426 QPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S V       R    +T    A +RC G LAC AQ  + + H+VSR 
Sbjct: 407 RAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRR 466

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +IEGLG + ++     +     I  PAD++ L+  Q         + GF ++S   L 
Sbjct: 467 AMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLL 516

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  +          L 
Sbjct: 517 KAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LT 566

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650
            +P VG  +A  I  F+++  N   ++ALL E    +    +       S+ +E  
Sbjct: 567 YLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 622



 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 99/256 (38%), Gaps = 18/256 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   +++ + +   +      D    +      F     +         +   G   
Sbjct: 546 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLQL 603

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +LE  I  L I  VG   A+ LA  + + +         + H    
Sbjct: 604 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISADWLDMRHTLP- 662

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENK 650
                      +  A+++ +F+ +  +     A+EA LK+        +K V    +  +
Sbjct: 663 -----------EKQAKSVRDFFDDSAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQ 711

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++
Sbjct: 712 TWVLTGSLERMSRDVAKEKLETLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLD 771

Query: 711 EEQFLFLLQQYNTTLR 726
           E+  L  L +    + 
Sbjct: 772 EDALLKRLTELGVAVD 787


>gi|163816857|ref|ZP_02208220.1| hypothetical protein COPEUT_03048 [Coprococcus eutactus ATCC 27759]
 gi|158448114|gb|EDP25109.1| hypothetical protein COPEUT_03048 [Coprococcus eutactus ATCC 27759]
          Length = 678

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 173/722 (23%), Positives = 315/722 (43%), Gaps = 61/722 (8%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           ++   I   +       +  L ++++     YY     I+ + EYDAL     A+     
Sbjct: 13  KENNDISGNNDNGKIARIKELVKQLNDAAKKYYMEDTEIMSNLEYDALYDELSALEKE-- 70

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
                   N P  K+G E+   L K  H  P LSL+K  ++  L  ++            
Sbjct: 71  --TGMVMSNSPTVKVGYEVVSELPKEAHEHPMLSLDKTKDVGALASWL------------ 116

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
                 +  K+DG  + + YE G+ + A  RG+G  GE ++   +    +P    +    
Sbjct: 117 GGQKGVISWKMDGLTVVLTYENGEMIKAVTRGNGEIGEVITNNAKVFANVPH--HIPYKG 174

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            + +RGE  I  +DF A+N+++       Y NPRN  SG +R+L+      R ++FF   
Sbjct: 175 KLTIRGEAVIKYSDFNAINEKITDA-ESKYKNPRNLCSGSVRQLDNKITKERNVHFFAFN 233

Query: 243 LGKTSEIFAKGQYEML-QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           L    ++     ++     +   GF V            I     E     +   +  DG
Sbjct: 234 LVDGEDVDFHNSFKYQLDWLEQQGFTVVEHY--LTDSAAIPDKVREFSEKITENDFPSDG 291

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           LV  +D+ +  + LG  A+ PR  ++ K+A+++A T L  ++    RTG++ PVA  +PV
Sbjct: 292 LVLMLDDLAYGRSLGTTAKFPRNAMAFKWADEEAITHLRYVEWSPSRTGLINPVAVFDPV 351

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  ++ A++HN   +K L            +  GD + V +A  +IP++   +    
Sbjct: 352 ELEGTTVSRASIHNVSILKSLA-----------LGEGDEIAVYKANMIIPQIARNLTM-- 398

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              +     P+ CP C                          C A++L+   H+VSR+A 
Sbjct: 399 ---SGNVVIPAACPACGGETEIVREEGGAVSGVETLYCTNQFCPAKKLKSFSHYVSRNAL 455

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI+GL +  ++ F   +     +  P D++ L   ++     I  + GFG+ S   L  +
Sbjct: 456 NIDGLSEATIEKFIDEK----ILEEPPDLYKLAAHREH----IVELEGFGEKSYNKLVAA 507

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           ++  R  ++ R +  LGI +VG   A+ +AK++ +         ++ A    D  + + +
Sbjct: 508 VDASRQTNMWRLVNGLGIANVGEATAKLMAKHFAN---------DMDAMKKADVSAYVEI 558

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G +IA+ IV +++N +N   ++ L+ E++      +      +  K  V TG+L   
Sbjct: 559 DGIGQVIAEDIVRYFENEKNCAIIDRLMAELTFVDEASDTEQD--LAGKVFVITGSLTHF 616

Query: 662 -QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
             R++ +E +   G  V+  +S KT  +I  D  +  SK +KA+ L V I++EE FL L+
Sbjct: 617 ENRNQLKELIESRGGQVTGSVSAKTSYLINNDVNSTSSKNKKAKSLDVPIISEEDFLELI 676

Query: 719 QQ 720
            Q
Sbjct: 677 GQ 678


>gi|116329958|ref|YP_799676.1| DNA ligase (NAD+) [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|122282269|sp|Q04W02|DNLJ_LEPBJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116123647|gb|ABJ74918.1| DNA ligase (NAD+) [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 681

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 198/732 (27%), Positives = 329/732 (44%), Gaps = 58/732 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K++      LS ++A+K ++ L  EI +H   YY  ++P I D ++D L +R   +  
Sbjct: 1   MSKKKKTYQNTLSEKEAKKVIAKLADEIRHHQYLYYVKNQPEISDFDFDQLFKRLRDLEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP      D N P   +G +++    K  H +P LSL   +N ++L  ++ +       
Sbjct: 61  EFPQFK---DLNSPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDDELLDWVNKT------ 111

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             D    +++E KIDG  I + YE G       RG G  G+DV+  IR +  IP  L   
Sbjct: 112 --DPDGLYSVEWKIDGASIVLYYENGMLKNGVTRGSGGIGDDVTDNIRTVRNIPLRLPEP 169

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NF 238
           I   + +RGEV+++  DF   N+    +    YANPRN ++G +++ N  D  +     F
Sbjct: 170 I--TVYLRGEVFMTFKDFEEFNE----LSSGKYANPRNLSAGSIKQKNSADTAKRPLRIF 223

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
                        K   ++L K+  L FPV            I     + K  + TL + 
Sbjct: 224 TYDATFPGFTKKFKTHQQILSKLEKLTFPVPPDT-VFVNGSKIAETIKDFKKKKDTLGFP 282

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
            DGLV K+++ S +   G  + SPRW  ++KF      +R++DI   +GRTG +TP   +
Sbjct: 283 TDGLVIKLNDISKRDAQGYTSHSPRWARAYKFDAIMKESRIVDITYAVGRTGKITPRVEI 342

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPVN+ G  +T ATLHN+DYI  L            + +G  V V + GE+IP V ++I 
Sbjct: 343 EPVNLAGTTVTFATLHNQDYIDEL-----------GVGIGAIVRVAKRGEIIPAVEEVI- 390

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               P    F  P +CP C+++ ++  N                 C  +    +  +  R
Sbjct: 391 ---TPGKDVFKIPDYCPSCKTKTIKKENL-------VDLFCPNPDCPDRVKNGIIFYCQR 440

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
              +IEGLG +Q++F +        IR  AD++ L+ +++    K+    GFG+ S+  +
Sbjct: 441 KQMDIEGLGDKQIEFLYDH----GYIRSIADLYDLKDQKE----KLMEEEGFGEKSLAII 492

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLS 597
           ++ I   +       + S+G+  +G ++   L ++   S           IA +     S
Sbjct: 493 FNGIEHSKQKDFRFLLPSIGLPELGHKVTELLIEHGIDSIDEILS-----IAKDKKRISS 547

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTG 656
           L+ +P +G    +A  E + + R +  +  L            K         +    TG
Sbjct: 548 LLEIPGIGPSTIKAFEENFSDKRILKLIARLKNAGLKLKADPIKVSDQQPFAGQSWCVTG 607

Query: 657 TLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + +    R KA + V   G    + +S KT  ++ G   GSKLEKA +LG+ + NE+QFL
Sbjct: 608 SFENFQPRDKAMDLVVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANELGIVVYNEKQFL 667

Query: 716 FLLQQYNTTLRI 727
            LL+      + 
Sbjct: 668 DLLKSLKINFKN 679


>gi|166154367|ref|YP_001654485.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 434/Bu]
 gi|166155242|ref|YP_001653497.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335620|ref|ZP_07223864.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis L2tet1]
 gi|254781287|sp|B0B9Q4|DNLJ_CHLT2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781289|sp|B0BBD3|DNLJ_CHLTB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|165930355|emb|CAP03841.1| NAD-dependent DNA ligase [Chlamydia trachomatis 434/Bu]
 gi|165931230|emb|CAP06795.1| NAD-dependent DNA ligase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 663

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 217/713 (30%), Positives = 348/713 (48%), Gaps = 71/713 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R +  +L  E+  HD  YY  ++P I D  YD   R    I    P+   S     P   
Sbjct: 6   RDDYIALCTELVEHDRRYYALNQPTISDYSYDMKMRELQEIEVQHPEWKVSW---SPTMY 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   +     V HS P LS+  ++++++L +F +R  +        S  ++LE KIDG 
Sbjct: 63  LGDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLG----YSPGYSLELKIDGI 118

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + IRYEK  F  A  RG+G  GED++A +  I ++P  L    PE +EVRGEV++S   
Sbjct: 119 AVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEA 178

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F  LN      G+  +ANPRNAA G L+ L+  +        +   G  ++   +  +E 
Sbjct: 179 FEELNACQREQGKLEFANPRNAAGGTLKLLSSKEA-AKRKLDLSVYGLITDQKKRSHFEN 237

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           LQ     GF V    +Q  +   +V    E++ +R+ LP  IDG+V KVD  + Q +LG 
Sbjct: 238 LQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDRLGL 297

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            ++  RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+N+D
Sbjct: 298 TSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQD 357

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +DIR+GD V V++ GEVIPK+V I + +R  +++P+  PS CP+C
Sbjct: 358 EIEK-----------KDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLCPVC 406

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
              VV++          + RC   L       +    F S+ A NI+ LG++ +   F+ 
Sbjct: 407 HEPVVKEK--------VSVRCINPLCSGGMLEKIC-FFASKSALNIDHLGEKVVTKLFE- 456

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I   +DIF L             + GF D S+ NL  SI   + ++L+R + +L
Sbjct: 457 ---VGLISSCSDIFALTEEDLK------QVPGFKDRSIQNLLASIAGAKKVALDRLLTAL 507

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  VG+  A +LA ++ +     +               L+ +  +G  +A +IV F+ 
Sbjct: 508 SIPFVGSSGAIALADHFGTLDKVIEA----------SLDELMSIEGIGPKVAASIVAFFS 557

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL---- 673
              N   +   ++E+   +   + +  + ++ K  V TGTLQ++ R +A+E +  L    
Sbjct: 558 KHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLGGKV 616

Query: 674 -------GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
                             T  +I G   G KL+KAQ LG+ I NE +   +L 
Sbjct: 617 SSSVSKS-----------TYAVIAGSEAGGKLKKAQDLGLSIWNESKLSRILD 658


>gi|116329438|ref|YP_799158.1| DNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|122282782|sp|Q04XH0|DNLJ_LEPBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116122182|gb|ABJ80225.1| DNA ligase (NAD+) (contains BRCT domain type II) [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 681

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 198/732 (27%), Positives = 329/732 (44%), Gaps = 58/732 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K++      LS ++A+K ++ L  EI +H   YY  ++P I D ++D L +R   +  
Sbjct: 1   MSKKKKTYQNTLSEKEAKKVIAKLADEIRHHQYLYYVKNQPEISDFDFDQLFKRLRDLEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP      D N P   +G +++    K  H +P LSL   +N ++L  ++ +       
Sbjct: 61  EFPQFK---DLNSPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDDELLDWVNKT------ 111

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             D    +++E KIDG  I + YE G       RG G  G+DV+  IR +  IP  L   
Sbjct: 112 --DPDGLYSVEWKIDGASIVLYYENGMLKNGVTRGSGGIGDDVTDNIRTVRNIPLRLPEP 169

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NF 238
           I   + +RGEV+++  DF   N+    +    YANPRN ++G +++ N  D  +     F
Sbjct: 170 I--TVYLRGEVFMTFKDFEEFNE----LSSGKYANPRNLSAGSIKQKNSADTAKRPLRIF 223

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
                        K   ++L K+  L FPV            I     + K  + TL + 
Sbjct: 224 TYDATFPGFTKKFKTHQQILSKLEKLTFPVPPDT-VFVNGSKIAETIKDFKKKKDTLGFP 282

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
            DGLV K+++ S +   G  + SPRW  ++KF      +R++DI   +GRTG +TP   +
Sbjct: 283 TDGLVIKLNDISKRDAQGYTSHSPRWARAYKFDAIMKESRIVDITYAVGRTGKITPRVEI 342

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPVN+ G  +T ATLHN+DYI  L            + +G  V V + GE+IP V ++I 
Sbjct: 343 EPVNLAGTTVTFATLHNQDYIDEL-----------GVGIGAIVRVAKRGEIIPAVEEVI- 390

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
               P    F  P +CP C+++ ++  N                 C  +    +  +  R
Sbjct: 391 ---TPGKDVFKIPDYCPSCKTKTIKKENL-------VDLFCPNPDCPDRVKNGIIFYCQR 440

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
              +IEGLG +Q++F +        IR  AD++ L+ +++    K+    GFG+ S+  +
Sbjct: 441 KQMDIEGLGDKQIEFLYDH----GYIRSIADLYDLKDQKE----KLIEEEGFGEKSLAII 492

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLS 597
           ++ I   +       + S+G+  +G ++   L ++   S           IA +     S
Sbjct: 493 FNGIEHSKQKDFRFLLPSIGLPELGHKVTELLIEHGIDSIDEILS-----IAKDKKRISS 547

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTG 656
           L+ +P +G    +A  E + + R +  +  L            K         +    TG
Sbjct: 548 LLEIPGIGPSTIKAFEENFSDKRILKLIARLKNAGLKLKADPIKVSDQQPFAGQSWCVTG 607

Query: 657 TLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + +    R KA + V   G    + +S KT  ++ G   GSKLEKA +LG+ + NE+QFL
Sbjct: 608 SFENFQPRDKAMDLVVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANELGIVVYNEKQFL 667

Query: 716 FLLQQYNTTLRI 727
            LL+      + 
Sbjct: 668 DLLKSLKINFKN 679


>gi|295093347|emb|CBK82438.1| DNA ligase, NAD-dependent [Coprococcus sp. ART55/1]
          Length = 678

 Score =  426 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 171/722 (23%), Positives = 314/722 (43%), Gaps = 61/722 (8%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           ++   I   +       +  L ++++     YY     I+ + EYDAL    +A+     
Sbjct: 13  KENNDISGNNDNGKIARIKELVKQLNDAAKKYYMEDTEIMSNLEYDALYDELNALEKE-- 70

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
                   N P  K+G E+   L K  H  P LSL+K  ++  L  ++            
Sbjct: 71  --TGMVMSNSPTVKVGYEVVSELPKEAHEHPMLSLDKTKDVGALASWL------------ 116

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
                 +  K+DG  + + YE G+ + A  RG+G  GE ++   +    +P    +    
Sbjct: 117 GGQKGVISWKMDGLTVVLTYENGEMIKAVTRGNGEIGEVITNNAKVFANVPH--HIPYKG 174

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            + +RGE  I  +DF A+N+++       Y NPRN  SG +R+L+      R ++FF   
Sbjct: 175 KLTIRGEAVIKYSDFNAINEKITDA-ESKYKNPRNLCSGSVRQLDNKITKERNVHFFAFN 233

Query: 243 LGKTSEIFAKGQYEML-QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           L    ++     ++     +   GF V            +     E     +   +  DG
Sbjct: 234 LVDGEDVDFHNSFKYQLDWLEQQGFTVVEHY--LTDSAALPDKVREFSEKITENDFPSDG 291

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           LV  +D+ +  + LG  A+ PR  ++ K+A+++A T L  ++    RTG++ PVA  +PV
Sbjct: 292 LVLMLDDLAYGRSLGTTAKFPRNAMAFKWADEEAITHLRYVEWSPSRTGLINPVAVFDPV 351

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  ++ A++HN   +K L            +  GD + V +A  +IP++   +    
Sbjct: 352 ELEGTTVSRASIHNVSILKSLA-----------LGEGDEIAVYKANMIIPQIARNLTM-- 398

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              +     P+ CP C                          C A++L+   H+VSR+A 
Sbjct: 399 ---SGNVVIPAACPACGGETEIVREEGGAASGVETLYCTNQFCPAKKLKSFSHYVSRNAL 455

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           NI+GL +  ++ F   +          D++ L   ++     I  + GFG+ S   L  +
Sbjct: 456 NIDGLSEATIEKFIDEKILEEL----PDLYKLAAHREH----IVELEGFGEKSYNKLVAA 507

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           ++  R  ++ R +  LGI +VG   A+ +AK++ +         ++ A    D  + + +
Sbjct: 508 VDASRQTNMWRLVNGLGIANVGEATAKLMAKHFAN---------DMDAMKKADVSAYVEI 558

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
             +G +IA+ IV +++N +N   ++ L+ E++      +      +  K  V TG+L   
Sbjct: 559 DGIGQVIAEDIVRYFENEKNCAIIDRLMAELTFVDEVSDTEQD--LAGKVFVITGSLTHF 616

Query: 662 -QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
             R++ +E +   G  V+  +S KT  +I  D  +  SK +KA+ L V I++EE FL L+
Sbjct: 617 DNRNQLKELIESRGGQVTGSVSAKTSYLINNDVNSTSSKNKKAKSLDVPIISEEDFLELI 676

Query: 719 QQ 720
            Q
Sbjct: 677 GQ 678


>gi|313903518|ref|ZP_07836909.1| DNA ligase, NAD-dependent [Thermaerobacter subterraneus DSM 13965]
 gi|313466339|gb|EFR61862.1| DNA ligase, NAD-dependent [Thermaerobacter subterraneus DSM 13965]
          Length = 817

 Score =  426 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 227/632 (35%), Positives = 338/632 (53%), Gaps = 52/632 (8%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           +R    + A  +E AR  + +L ++I +HD  YY   +P I D+ YDAL R+   +   F
Sbjct: 44  ERPAEDVPA-DLEAARARVEALREQIRHHDYLYYVLDRPEIDDAAYDALMRQLRELEQRF 102

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P+L     P+ P  ++GG       +V H+ P LSL+  ++ E+L  F  R+ R      
Sbjct: 103 PELV---TPDSPTQRVGGRPAAPFARVEHAEPMLSLDNAFSREELEAFDQRVRRAVG--- 156

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
            + + +  E KIDG  I + YE G+FV  A RGDG +GEDV+A +R I ++P  L     
Sbjct: 157 -DDVAYVAELKIDGLSIALTYEGGRFVRGATRGDGEAGEDVTANLRTIRSLPLRLRDRER 215

Query: 183 E---IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
                +E+RGEVY++ + F  LN E  A G  P+ANPRNAA+G +R+L+P    +R LN 
Sbjct: 216 PVPRRVEIRGEVYMTFDAFRRLNQEQEARGLAPFANPRNAAAGSVRQLDPAVTASRSLNL 275

Query: 239 FVHGLGKT--SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
           +V+ L      E   + Q+E+LQ +R  G PVN   R+      + +Y +E    R  LP
Sbjct: 276 WVYALAGWEGDEPAPRSQWEVLQTLRAWGLPVNPHARRCTGLDELFAYIDEWAERRHQLP 335

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           Y  DG+V KVD+   Q+QLG  ARSPRW I++KF  ++A TR+ DI + +GRTG LTPVA
Sbjct: 336 YLTDGIVIKVDDLEQQRQLGATARSPRWAIAYKFPAEKARTRVRDILVSVGRTGALTPVA 395

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            L+PV + G  ++ A+LHN DYI+            +D+R+GD V+V +AGE+IP+VV++
Sbjct: 396 VLDPVLLAGTTVSRASLHNADYIR-----------EKDVRIGDLVVVHKAGEIIPEVVEV 444

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           +   R    +PFS P  CP C S VVR          AA RC      + Q  ER++HF 
Sbjct: 445 VKEARTGAERPFSMPERCPACGSPVVRVEGE------AATRCPNAACPAQQL-ERIRHFA 497

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SRDA +IEGLG   ++           +R  AD++ L+         +  +   G  S  
Sbjct: 498 SRDAMDIEGLGPAIIEQLVGR----GLVRDVADLYHLEPE------PLAQLERMGPKSAA 547

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
           NL  +I+  R   L R ++ LGIR VG  +A  LA+++ + Q                  
Sbjct: 548 NLVAAIDASRGRPLRRLLYGLGIRFVGERVAGLLARHFGTIQRLMAAGP----------D 597

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            L+ VP +G  IA+++V F+++  N   +  L
Sbjct: 598 ELMAVPEIGPRIAESVVIFFRDEHNRQLIRRL 629



 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 47/75 (62%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K  VFTG L  + R +AQE V  LG   +  +SRKTD ++ G+  GSKL +A++LG+
Sbjct: 739 VAGKTFVFTGGLASMTRDEAQELVEALGGRATGSVSRKTDYVVAGEGAGSKLARARELGI 798

Query: 707 KIMNEEQFLFLLQQY 721
            +++E  FL L+ + 
Sbjct: 799 PVLDEAAFLRLVGRE 813


>gi|293188969|ref|ZP_06607703.1| DNA ligase, NAD-dependent [Actinomyces odontolyticus F0309]
 gi|292822104|gb|EFF81029.1| DNA ligase, NAD-dependent [Actinomyces odontolyticus F0309]
          Length = 777

 Score =  426 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 206/798 (25%), Positives = 341/798 (42%), Gaps = 113/798 (14%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           + P+   + E  R   + L   I+     YY    P + D++YD + R  + I   +P L
Sbjct: 1   MDPMADSTFETTRDRYNDLVDRINDARAAYYDRDSPTLADADYDRMYREVEQIEERYPQL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
                 + P   +GG ++    +V H    +SL+ ++++E+L  + TR+       D   
Sbjct: 61  ---RSADSPTMSVGGSVDSGFSEVRHLAQMMSLDDVFSLEELAAWETRMAEATGISD--- 114

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           +  T E K+DG  I + YE G+ V AA RGDG+ GEDV+A  R I +IP+ L+  +P  I
Sbjct: 115 LEMTTEVKVDGLSINLLYENGRLVRAATRGDGYVGEDVTANARTIASIPQTLTGTVPARI 174

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244
           EVRGEVY    DF A N+  +  G K + N RNAASG LR+ +PT+   R L+   HG+G
Sbjct: 175 EVRGEVYFPVADFAAFNEARVEAGEKTFVNARNAASGSLRQKDPTETAKRPLSMVAHGIG 234

Query: 245 KT----SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
                        Q    +++R  G PV+   R       I     E+   R  L ++ID
Sbjct: 235 FVEVGEDFTEPTTQMGWYEQLRDWGLPVSPYTRMLTGRKAIEERIAELGEKRHDLEHEID 294

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K+++  LQ+ LG  +R+PRW  ++KF  ++  TRLLDI +Q+GRTG +TP   +E 
Sbjct: 295 GVVVKINDLDLQRSLGSTSRTPRWAAAYKFPPEEVHTRLLDIRVQVGRTGRVTPYGVMES 354

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G+ +  ATLHN   +             + + +GD V++++AG+VIP++V  + + 
Sbjct: 355 VLVAGSNVARATLHNAQEVAR-----------KGVLIGDLVVLRKAGDVIPEIVAPVEDA 403

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R+   +PF  P  CP C + +V++      +     RC     C AQ  ERL H  +R A
Sbjct: 404 RNGSERPFVMPKQCPSCGTTLVQE-----KEGDVDLRCPNKGLCPAQITERLAHVGARSA 458

Query: 481 FNIEGLGKQQLDFFFKSEDP---------------------------------------- 500
            ++EGLG +      + E+                                         
Sbjct: 459 LDVEGLGDESALAMTQPENDRDEVAAALVAGHSVTLEDGTVLTLEGGRELPHGEQITRAE 518

Query: 501 -------AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                  A ++R  A +F L+          + +   G+ +           +     + 
Sbjct: 519 ELLPAPQAPALRTEAALFDLRAEDLRDVMVWKPVKKKGEETGDWKQVRYFWTKAYKPRKL 578

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
                   +    ++         +    E+    +      L  + +  VG   A+A+ 
Sbjct: 579 RGQTVFEPIEPSASKG-------TEKMLAELEKAKSQPLARVLVALSIRHVGPTAARALA 631

Query: 614 E-FYQNPRNICA-VEAL------------------------------LKEVSPSIGRHEK 641
           E F        A VE L                               +          +
Sbjct: 632 EKFLSMDALRAASVEELSAVEGVGEEIGRSLRDWFTVDWHLEVLQAWARAGVRMADEAPE 691

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
             S  +    +V +G +    R  A+E +T  G   +  +S+KT +++ G   GSK +KA
Sbjct: 692 PTSDVLAGLTIVVSGAMPGYDREGAKEAITSRGGKAAGSVSKKTSLVVAGPGAGSKEKKA 751

Query: 702 QQLGVKIMNEEQFLFLLQ 719
           ++LGV ++ E+QF  LL+
Sbjct: 752 KELGVPVITEQQFADLLE 769


>gi|45659103|ref|YP_003189.1| NAD dependent DNA ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|81406496|sp|Q72MA6|DNLJ_LEPIC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|45602349|gb|AAS71826.1| NAD dependent DNA ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 681

 Score =  426 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 198/732 (27%), Positives = 329/732 (44%), Gaps = 58/732 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K++    + LS ++A+  ++ L  EI +H   YY  + P I D ++D L RR   +  
Sbjct: 1   MPKKKEDSQKTLSEKEAKGLIAKLSDEIRHHQYLYYVKNDPKISDFDFDQLFRRLQDLEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP      D   P   +G +++    K  H +P LSL   +N  +L +++ +       
Sbjct: 61  EFPQFK---DLASPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDNELLEWVNKT------ 111

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             D    +++E KIDG  I + YE G       RG G  G+DV+  IR I  IP  L   
Sbjct: 112 --DPEGLYSVEWKIDGASIVLYYENGILKNGVTRGSGGIGDDVTDNIRTIRNIPLRLPEP 169

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NF 238
           I   + +RGEV+++  DF   N     +    YANPRN ++G +++ N +D  +     F
Sbjct: 170 I--TVYLRGEVFMTFKDFEEFNA----LSSGKYANPRNLSAGSIKQKNSSDTAKRPLRIF 223

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
                    E   K   E+  K+  L FPV       +    I     E K  + +L + 
Sbjct: 224 TYDATFPNMEKKFKTHQEIFSKLEKLTFPVPPNTAFVSG-SKIAKTIQEFKKQKDSLGFP 282

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
            DGLV K+++ S +  LG  + SPRW  ++KF      ++++DI   +GRTG +TP A +
Sbjct: 283 TDGLVIKLNDISKRDALGYTSHSPRWARAYKFDAIMKESKIVDITYAVGRTGKITPRAEI 342

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EP+++ G  +T ATLHN+DYI  L            + +G  V V + GE+IP V +++ 
Sbjct: 343 EPISLAGTTVTFATLHNQDYIDEL-----------GVGIGAIVRVAKRGEIIPAVEEVVT 391

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             +      F  P  CP C ++ +        K            C  +    +  +  R
Sbjct: 392 PGKE----VFKIPDRCPSCNTQTI-------KKESLVDLFCPNPDCPDRVKNGIIFYCQR 440

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
              +IEGLG +Q++F +  +     I+  AD++ L+ +++    K+    GFG+ SV  +
Sbjct: 441 KQMDIEGLGDKQIEFLYDHD----YIKSIADLYDLKDQKE----KLMEEEGFGEKSVNII 492

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLS 597
              I + +       + SLG+  +G ++   L ++   S           IA +     S
Sbjct: 493 LKGIEQSKQKDFRFLLPSLGLSELGHKVTELLIEHGIDSIDEILS-----IAKDQKKIES 547

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTG 656
           L+ +P +G    QA  E + + R +  +E L K          +         +    TG
Sbjct: 548 LLEIPGIGPSTIQAFQENFSDKRILKLIERLKKAGLKMKADPIQVADQQPFAGQSWCVTG 607

Query: 657 TLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + +    R KA + +   G    + +S KT  ++ G   GSKLEKA +LGV + +E+QFL
Sbjct: 608 SFENFQPRDKAMDLIVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANELGVSVYDEKQFL 667

Query: 716 FLLQQYNTTLRI 727
            LL+      + 
Sbjct: 668 DLLKSLKIDFKN 679


>gi|212696137|ref|ZP_03304265.1| hypothetical protein ANHYDRO_00673 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676766|gb|EEB36373.1| hypothetical protein ANHYDRO_00673 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 668

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 191/712 (26%), Positives = 340/712 (47%), Gaps = 59/712 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + ++  L  +I+  +  YY   +PI+ D EYD L      + ++        +   P  +
Sbjct: 6   KIKIDELIDKINELNYHYYTLDEPIVSDGEYDKLYDELRELENS----TGYINAFSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLE 131
           +GG +     K  H     S +K  NI+ L+ +I R  +   + ++        + F  E
Sbjct: 62  VGGTILDKFEKHFHITRLYSQDKSQNIDQLKDWIIRTKKLRDQYNNSHDDKLEKLEFLTE 121

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I + YE G    A+ RG+G  GEDV+  +  IPTIP  +      ++E++GE 
Sbjct: 122 YKFDGLTINLTYENGLLKTASTRGNGIVGEDVTKQVLTIPTIPTKIKE--KSLLEIQGEA 179

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
            +  +     N+E       P  N RNAA+G +R L+ +   +           T+ +  
Sbjct: 180 VMPLSSLKKYNEE----NEIPLKNARNAAAGAIRNLDTSQTRKRNLKAYFYQISTNSLDF 235

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K + + L  +     PV    +    F  IV   + +K  R  +    DG+V KV++   
Sbjct: 236 KTEEDKLNFLEEQKLPVYPYKKLIKNFDEIVKEIDYIKEERHHIDVLTDGVVIKVNDVKT 295

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG   + PRW I++K+  ++ +T+LLD+   +GRTG +TP A LEPV+  G  +  A
Sbjct: 296 QEVLGYTNKFPRWSIAYKYDPEEYTTKLLDVVWNVGRTGKVTPSAILEPVDFSGVTVQRA 355

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TL+N D I             + +++G +V ++R+ +VIP+++ ++      +      P
Sbjct: 356 TLNNYDDI-----------LRKKVKIGSQVFIRRSNDVIPEILGVVDEN-QENTVEIKKP 403

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S +         +      C   ++C+ Q   R+ HF SRDA +IEGL ++ +
Sbjct: 404 TKCPYCHSEL--------IEGNVHIYCPNSISCTPQLKARMVHFASRDAMDIEGLSEKTV 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F    D    I+   D++ L+     +      +  F +    NL  +I   +   L 
Sbjct: 456 ELFINELD----IKEIYDLYDLKYEDLIN------LESFKEKKTNNLLQAIENSKKCDLN 505

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            FI+++GI +VG + AR LA+ Y S +N                  L+ V  +G+  +  
Sbjct: 506 HFIYAIGIPNVGVKTARDLAEKYKSLENLRNAKE----------DDLVEVEDIGEKTSHD 555

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           IVEF+ +     +++ LL++        E  VS+ +E  K+V TG+++  +R+  ++ + 
Sbjct: 556 IVEFFNDKNIKESIDKLLEKGIKIKKIEESEVSNSLEGMKIVITGSIENYKRNDIKKLIL 615

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEE--QFLFLLQQ 720
                V++ +S+ TD+++ G+ PGSK EKA QLG+K++ NEE  +F+  L++
Sbjct: 616 DHNGDVTSSVSKNTDLVLCGEKPGSKKEKADQLGIKVLENEELFEFIRKLEE 667


>gi|24216818|ref|NP_714299.1| NAD dependent DNA ligase [Leptospira interrogans serovar Lai str.
           56601]
 gi|81465271|sp|Q8EYU4|DNLJ_LEPIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|24198185|gb|AAN51317.1| NAD dependent DNA ligase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 681

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 198/732 (27%), Positives = 329/732 (44%), Gaps = 58/732 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K++    + LS ++A+  ++ L  EI +H   YY  + P I D ++D L RR   +  
Sbjct: 1   MPKKKEDSQKTLSEKEAKGLIAKLSDEIRHHQYLYYVKNDPKISDFDFDQLFRRLQDLEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP      D   P   +G +++    K  H +P LSL   +N  +L +++ +       
Sbjct: 61  EFPQFK---DLASPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDNELLEWVNKT------ 111

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             D    +++E KIDG  I + YE G       RG G  G+DV+  IR I  IP  L   
Sbjct: 112 --DPEGLYSVEWKIDGASIVLYYENGILKNGVTRGSGGIGDDVTDNIRTIRNIPLRLPKP 169

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NF 238
           I   + +RGEV+++  DF   N     +    YANPRN ++G +++ N +D  +     F
Sbjct: 170 I--TVYLRGEVFMTFKDFEEFNA----LSSGKYANPRNLSAGSIKQKNSSDTAKRPLRIF 223

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
                    E   K   E+  K+  L FPV       +    I     E K  + +L + 
Sbjct: 224 TYDATFPNMEKKFKTHQEIFSKLEKLTFPVPPNTAFVSG-SKIAKTIQEFKKQKDSLGFP 282

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
            DGLV K+++ S +  LG  + SPRW  ++KF      ++++DI   +GRTG +TP A +
Sbjct: 283 TDGLVIKLNDISKRDALGYTSHSPRWARAYKFDAIMKESKIVDITYAVGRTGKITPRAEI 342

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EP+++ G  +T ATLHN+DYI  L            + +G  V V + GE+IP V +++ 
Sbjct: 343 EPISLAGTTVTFATLHNQDYIDEL-----------GVGIGAIVRVAKRGEIIPAVEEVVT 391

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             +      F  P  CP C ++ +        K            C  +    +  +  R
Sbjct: 392 PGKE----VFKIPDRCPSCNTQTI-------KKESLVDLFCPNPDCPDRVKNGIIFYCQR 440

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
              +IEGLG +Q++F +  +     I+  AD++ L+ +++    K+    GFG+ SV  +
Sbjct: 441 KQMDIEGLGDKQIEFLYDHD----YIKSIADLYDLKDQKE----KLMEEEGFGEKSVNII 492

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLS 597
              I + +       + SLG+  +G ++   L ++   S           IA +     S
Sbjct: 493 LKGIEQSKQKDFRFLLPSLGLSELGHKVTELLIEHGIDSIDEILS-----IAKDQKKIES 547

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTG 656
           L+ +P +G    QA  E + + R +  +E L K          +         +    TG
Sbjct: 548 LLEIPGIGPSTIQAFQENFSDKRILKLIERLKKAGLKMKADPIQVADQQPFAGQSWCVTG 607

Query: 657 TLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           + +    R KA + +   G    + +S KT  ++ G   GSKLEKA +LGV + +E+QFL
Sbjct: 608 SFENFQPRDKAMDLIVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANELGVSVYDEKQFL 667

Query: 716 FLLQQYNTTLRI 727
            LL+      + 
Sbjct: 668 DLLKSLKIDFKN 679


>gi|167766753|ref|ZP_02438806.1| hypothetical protein CLOSS21_01259 [Clostridium sp. SS2/1]
 gi|167711507|gb|EDS22086.1| hypothetical protein CLOSS21_01259 [Clostridium sp. SS2/1]
          Length = 651

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 190/707 (26%), Positives = 314/707 (44%), Gaps = 65/707 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
             +  L   ++     YYQ +K ++ + EYD +      +         +   N P   +
Sbjct: 5   DRMKELIHTLNEAGKAYYQQNKEVMSNLEYDKMYDELLELEKK----TNTVLSNSPTIHV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G E+  +L K  H  P LSL+K    + L  ++                  L  K+DG  
Sbjct: 61  GYELMTALEKEAHPSPMLSLDKTKEPDQLATWLN------------GQEGILSWKLDGLT 108

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I + YE G+ + A  RG+G  GE V+   R    +P    +     + +RGE  I  +DF
Sbjct: 109 IVLTYEHGELLKAVTRGNGEVGEVVTNNARVFENVP--RHIAYQGTLVIRGEAIIPYSDF 166

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
             +N+E+  V    Y NPRN  SG +R+LN      R+++F+   +     +     +E 
Sbjct: 167 YKMNEEIEDVD-SQYKNPRNLCSGSVRQLNNEITAKRHVHFYAFSVSDVEGMDFDNSFEK 225

Query: 258 L-QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
                  LGF V   +R       I     +            DGLV   D  +  K LG
Sbjct: 226 KLDWAASLGFDVVEHIRVTEDT--IRGEIEKFSKKIEQFDLPSDGLVLVYDNLAYGKSLG 283

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ PR  I+ K+A++ A T L +I+    RTG++ PVA  EPV + G  ++ A+LHN 
Sbjct: 284 RTAKFPRDSIAFKWADETAETTLTEIEWSPSRTGLINPVAIFEPVELEGTTVSRASLHNI 343

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             ++ L            + +GD ++V +A  +IP++ +         +     P  CP 
Sbjct: 344 SVMEELQ-----------LGIGDEIVVYKANMIIPQLAENKT-----KSGNIEIPHTCPA 387

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C      +      +            CSA++++   HFVSRDA N++GL +  L     
Sbjct: 388 CGGETKIED-----ENGIRTLVCTNEFCSAKKIKSFSHFVSRDAMNVDGLSEATLQKMID 442

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +    D+FTL+  ++    +I  + GFG+ S  NL ++IN  +  +L  FI+S
Sbjct: 443 ----VGLLNEIYDLFTLKDHKE----EILELEGFGEKSYQNLINAINDSKQPALANFIYS 494

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI +VG   A+ + K++           +  A    D    I +  +G +IA+A+V ++
Sbjct: 495 LGIPNVGLSNAKLICKHFK---------EDFNAIREADAEDFIAIDQIGPMIAEAMVSYF 545

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGA 675
             P N   +E LL+ V     + E      +E K  V TG+L     R + +E + Q+G 
Sbjct: 546 HTPHNQKILEQLLQYVQFE-KKEESKTEQILEGKTFVVTGSLDHFDNRKQLKEEIEQMGG 604

Query: 676 VVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            V+  +S+KTD +I  D     SK +KA +L + I++EE FL L+++
Sbjct: 605 KVTGSVSKKTDYLINNDKMSQSSKNKKAMELNIPILSEEDFLDLIRR 651


>gi|317499031|ref|ZP_07957312.1| DNA ligase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893681|gb|EFV15882.1| DNA ligase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 651

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 191/707 (27%), Positives = 314/707 (44%), Gaps = 65/707 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
             +  L   ++     YYQ +K ++ + EYD +      +         +   N P   +
Sbjct: 5   DRMKELIHTLNEAGKAYYQQNKEVMSNLEYDKMYDELLELEKK----TNTVLSNSPTIHV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G E+   L K  H  P LSL+K    + L  ++                  L  K+DG  
Sbjct: 61  GYELMTVLEKEAHPSPMLSLDKTKEPDQLATWLN------------GQEGILSWKLDGLT 108

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I + YE GK + A  RG+G  GE V+   R    +P    +     + +RGE  I  +DF
Sbjct: 109 IVLTYEHGKLLKAVTRGNGEVGEVVTNNARVFENVP--RRIAYQGTLVIRGEAIIPYSDF 166

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
             +N+E+  V    Y NPRN  SG +R+LN      R+++F+   +     +     +E 
Sbjct: 167 YKMNEEIEDVD-SQYKNPRNLCSGSVRQLNNEITAKRHVHFYAFSVSDVEGMDFDNSFEK 225

Query: 258 L-QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
               +  LGF V   +R       I     +            DGLV   D+ +  K LG
Sbjct: 226 KLDWVASLGFDVVEHIRVTEDT--IRGEIEKFSKKIEQFDLPSDGLVLVYDDLAYGKSLG 283

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ PR  I+ K+A++ A T L +I+    RTG++ PVA  EPV + G  ++ A+LHN 
Sbjct: 284 RTAKFPRDSIAFKWADETAETTLTEIEWSPSRTGLINPVAIFEPVELEGTTVSRASLHNI 343

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             ++ L            + +GD ++V +A  +IP++ +         +     P  CP 
Sbjct: 344 SVMEELQ-----------LGIGDEIVVYKANMIIPQLAENKT-----KSGNIEIPHTCPA 387

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C      +      +            CSA++++   HFVSRDA N++GL +  L     
Sbjct: 388 CGGETKIED-----ENGIRTLVCTNEFCSAKKIKSFSHFVSRDAMNVDGLSEATLQKMID 442

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +    D+FTL+  ++    +I  + GFG+ S  NL ++IN  +  +L  FI+S
Sbjct: 443 ----VGLLNEIYDLFTLKDHKE----EILELEGFGEKSYQNLINAINDSKQPALANFIYS 494

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI +VG   A+ + K++           +  A    D    I +  +G +IA+A+V ++
Sbjct: 495 LGIPNVGLSNAKLICKHFK---------EDFNAIREADAEDFIAIDQIGPMIAEAMVSYF 545

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGA 675
             P N   +E LL+ V     + E      +E K  V TG+L     R + +E + Q+G 
Sbjct: 546 HTPHNQKILEQLLQYVQFE-KKEESKTEQILEGKTFVVTGSLDHFDNRKQLKEEIEQMGG 604

Query: 676 VVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            V+  +S+KTD +I  D     SK +KA +L + I++EE FL L+ +
Sbjct: 605 KVTGSVSKKTDYLINNDKMSQSSKNKKAMELNIPILSEEDFLNLIGR 651


>gi|160940658|ref|ZP_02088001.1| hypothetical protein CLOBOL_05552 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436393|gb|EDP14160.1| hypothetical protein CLOBOL_05552 [Clostridium bolteae ATCC
           BAA-613]
          Length = 699

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 183/729 (25%), Positives = 304/729 (41%), Gaps = 64/729 (8%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           MK+ Q    E LS E     +  L ++++ +   YY  + P + D+ YD L    DA+  
Sbjct: 25  MKQNQN---EHLSQEAI--RIHHLVKQLNQYRHEYYNMNAPSVSDAVYDCLFDELDALEK 79

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
                      N P   +G +    L KV H IP LSL+K   I ++  F+ +       
Sbjct: 80  R----TGIILSNSPTQTVGYQAVSQLDKVHHPIPLLSLDKTKQITEIHDFMKKQKSLL-- 133

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                       K+DG  I + YE G+ + A+ RGDG  GE V+    A   IP  LS+ 
Sbjct: 134 ----------MLKLDGLTIKLTYENGRLIEASTRGDGDEGEIVTHNASAFRNIP--LSIP 181

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NF 238
             + + + GE +I  +DF  L + ++     PY N RN A+G  R L+           +
Sbjct: 182 YQKRLVISGEAFIHIHDFERLQNTLLDSNGNPYRNARNLAAGSARCLDANICKERSVSFY 241

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL--- 295
             H L    E     +    +         +       +    +   NE  +    L   
Sbjct: 242 AFHVLEGLDESSELSKSREARLTALHPLGFDICPFLVLSSEASLETLNEAMATLRDLASE 301

Query: 296 -PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
               IDGLV + D+       G   R  +   + KF +    T    I+ Q GRTG + P
Sbjct: 302 LDIPIDGLVLRYDDLPYSVACGRTGRFYKDGKAFKFEDDTFKTIFRSIEWQTGRTGEIAP 361

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA  +P+ I G+ ++ A+LHN  +I+ L+           +  G R+LV +   +IP + 
Sbjct: 362 VALFDPIEIDGSTVSRASLHNLTFIQDLE-----------LYPGCRILVSKRNMIIPHIE 410

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
           + +    + D      P  CP C S           + +          CS Q L+R  H
Sbjct: 411 ENLDRGHYQDM----TPRTCPCCGSPTRIYSRSSGSERIVQTLHCDNPNCSQQILQRFVH 466

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           F  + A NI G+ +  L  F         ++   DI+ L R     + +I ++ GFG  S
Sbjct: 467 FCEKKAMNIIGISEATLKQFID----LGFLKCFQDIYHLDRF----SDQIADMDGFGKKS 518

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNND 593
              L++SIN+ RN +  R++ ++ I  +G   +R L +Y+  +                 
Sbjct: 519 YERLWNSINESRNTTFVRYLVAMDIPMIGRTASRKLEQYFHGNLLELELA--------AM 570

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE---KNVSSEIENK 650
                  +   G+ ++  I+E++ +  N+     L KE+           +  ++     
Sbjct: 571 SRFDFTCLEDFGETMSSNIIEWFHDRENLTLWRNLQKEMHFKEREETIMTETKNNPFAGC 630

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG L+   R      +  LGA   + +++KTD +I G+  GSKL KAQQLGVK+++
Sbjct: 631 TIVATGKLENFTRDSINSKIISLGATAGSSVTKKTDYLICGEKAGSKLAKAQQLGVKVLS 690

Query: 711 EEQFLFLLQ 719
           E++FL ++ 
Sbjct: 691 EQEFLNMIA 699


>gi|118474676|ref|YP_892270.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp. fetus
           82-40]
 gi|166215570|sp|A0RPY7|DNLJ_CAMFF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118413902|gb|ABK82322.1| DNA ligase, NAD-dependent [Campylobacter fetus subsp. fetus 82-40]
          Length = 645

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 210/701 (29%), Positives = 339/701 (48%), Gaps = 60/701 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +       ++     YY    P+  D EYD L           PDL  S     P N+
Sbjct: 3   KNDYLKAVDSLNLWAKAYYTDDSPMASDDEYDKLYNAVVQFEKENPDLKLSY---SPTNR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           IGGE+     K++H     S+E I++  +L  +I+R        D     F  EPK DG 
Sbjct: 60  IGGEILDEFKKISHIEKMWSMEDIFSDSELVAWISR-------GDKTDCEFFAEPKFDGA 112

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G  + AA RGDG  GEDV+   + I ++P  L ++  + IE+RGEV I+K+D
Sbjct: 113 SLNLLYENGNLISAATRGDGSVGEDVTNNAKVISSVP--LQIDYKDKIEIRGEVVITKDD 170

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N E       P ANPRNAA+G LR+L+      R L F+  G+G  + +      +
Sbjct: 171 FELINIERSKNSEPPLANPRNAAAGSLRQLDNGIVKQRKLKFYPWGVG-ENSLKFNKHSQ 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++  +R LGF  +N  +       +   Y E+ S+R   P  +DG+V +V++ S   QLG
Sbjct: 230 IMDFVRSLGFLHDNFCKVIRGIDELKIAYKELLSVRELKPILMDGMVIRVNDLSKANQLG 289

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M+++KF   + + RL+DI +Q+GRTG++TPV  L+ V I GA I N TLHN 
Sbjct: 290 YTVKFPKFMVAYKFPATEKTARLIDILLQVGRTGVVTPVGLLDGVLIDGAFIKNVTLHNF 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           ++   D V V R+G+VIPK+  +  + R         P  CP 
Sbjct: 350 DEIDRL-----------NLMKNDFVTVIRSGDVIPKITGVFKDRRDGSQSEIIRPKICPK 398

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C + ++ +                 L C A+ +  + +F S+   NI+GLG   ++  ++
Sbjct: 399 CGNELLDEG---------VFIKCQNLTCKARVVSSIIYFASKKCMNIDGLGDAIVELLYQ 449

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  I+  ADI+ L             + GF    ++NL  +IN  +  +L++FI S
Sbjct: 450 KN----IIKDIADIYRLDE------LSFIGLEGFKTKKISNLLSAINNSKTPNLDKFIAS 499

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ +A  Y            +                 G+ +A + +EF 
Sbjct: 500 LGIEHIGEVAAKKIANNYGDRWLELTLEELLAL------------DGFGEAMALSYLEFM 547

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +   N+  ++ LL+ ++P +   E   +     K +V TGTL +  R + +  +   GA 
Sbjct: 548 RV--NLEKIKELLEFITPKMQNLELKTN-IFSGKTVVITGTLSR-SRDEFKAELESYGAK 603

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VS+ +S+KTD ++ G+  GSKLEKA +LGV+ ++E ++  L
Sbjct: 604 VSSSVSKKTDFVLYGNEAGSKLEKANELGVRAIDESEYESL 644


>gi|15894478|ref|NP_347827.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum ATCC 824]
 gi|81530636|sp|Q97JS8|DNLJ1_CLOAB RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|15024117|gb|AAK79167.1|AE007633_11 DNA ligase (NAD dependent), LigA [Clostridium acetobutylicum ATCC
           824]
 gi|325508609|gb|ADZ20245.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum EA 2018]
          Length = 663

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 194/707 (27%), Positives = 341/707 (48%), Gaps = 54/707 (7%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L ++++ +   YY    PI+ D EYD +      +           +PN P  ++
Sbjct: 2   KLIEDLIEKLNKYSYSYYVLDNPIVADKEYDIMYDELKRLEEE----TEYINPNSPTQRV 57

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIFFTLEP 132
           G  +     K  H     SL+K    ++++ F+ +  +F ++      +   S  F +  
Sbjct: 58  GDIILDKFEKTHHKNKLWSLDKAQKKDEVKAFVNKCVKFVEQYNLTHSEKLPSPQFVVTQ 117

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  I   Y + + + +A RG G  GED++   + I  +P    +N    I+V GE  
Sbjct: 118 KLDGLTINCSYNESRLIKSATRGTGEIGEDITEQSKTILNLPNA--INYSGEIDVHGEAL 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           ++KN     N  +  V   P  N RN A+G LR LN  +  R            ++   K
Sbjct: 176 MTKNALEQYNSNL-KVNETPLKNLRNGAAGALRNLNIKETARRKLVAQFYDLSYTDKKLK 234

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              E+L  ++  GF +       N F  I    + +  +RS+L YDIDG+V ++++    
Sbjct: 235 KYSEILLFLKSQGFNITEYN-ICNNFDEINQAIDNIGEVRSSLQYDIDGVVIRLNDIETS 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + +G   + P++ I++KF  K+ +T+L+D++  +GR+G + P A LEPV + G ++  AT
Sbjct: 294 RLMGYTIKCPKYAIAYKFKAKETTTKLIDVEWNVGRSGRINPTAILEPVELAGVIVKRAT 353

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L+N D IK                 G RV ++R+ +VIP+++ +         +    P+
Sbjct: 354 LNNMDDIKRKKIK-----------KGARVFLRRSNDVIPEIMGVTEETEGETKEI-EAPT 401

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S +V++             C   L+C  Q ++ + HF SR A NIEG  ++  +
Sbjct: 402 ICPYCGSEIVKE--------GVHLFCENTLSCKPQMVKSIVHFASRKAMNIEGFSEKTAE 453

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             F+      +I+  +D++ + + +  S      +  F D   +NL ++I K +   L+ 
Sbjct: 454 QLFEK----LNIKSISDLYRITKEELMS------LDKFKDKKASNLINAIEKSKECDLDS 503

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F++SLGI +VG + A  L K + S++N  +            +  LI V  +G I+A++I
Sbjct: 504 FVYSLGIPNVGKKTATDLCKQFKSFENIKKA----------SYFELILVQDIGSIVAKSI 553

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           V+F++  +   ++  L K          +   S   +K +V TG+LQ   R + +E +  
Sbjct: 554 VDFFKQEKIEKSLNELFKLGVKPSYEESEVSESVFNDKTVVATGSLQNYSRTEIKEKLES 613

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           LGA V+  +S+KTD +I G+N GSK +KA  LGVKI+ EE+F  L++
Sbjct: 614 LGAKVAGSVSKKTDYVIAGENAGSKYDKAVALGVKILTEEKFEELIE 660


>gi|325846528|ref|ZP_08169443.1| DNA ligase (NAD+) [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481286|gb|EGC84327.1| DNA ligase (NAD+) [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 668

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 186/708 (26%), Positives = 334/708 (47%), Gaps = 56/708 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + ++  L  +I+  +  YY   +P++ D EYD L      + ++        +   P  +
Sbjct: 6   KIKIDELIDKINELNYHYYTLDEPMVSDGEYDKLYDELRELENS----TGYINAFSPTQR 61

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLE 131
           +GG +     K  H     S +K  NI+ L+ +I R  +   + ++        + F  E
Sbjct: 62  VGGTILDKFEKHFHITRLYSQDKSQNIDQLKDWIIRTKKLRDQYNNSHDDKLEKLEFLTE 121

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K DG  I + YE G    A+ RG+G  GEDV+  +  IPTIP  +      ++E++GE 
Sbjct: 122 YKFDGLTINLTYENGLLKTASTRGNGIVGEDVTKQVLTIPTIPTKIKE--KSLLEIQGEA 179

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
            +  +     N+E       P  N RNAA+G +R L+ +   +           T+ +  
Sbjct: 180 VMPLSSLKKYNEE----NEIPLKNARNAAAGAIRNLDTSQTRKRNLKAYFYQISTNSLDF 235

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K + + L  +     PV    +    F  IV   + +K  R  +    DG+V KV++   
Sbjct: 236 KTEEDKLNFLEEQKLPVYPYKKLIKNFDEIVKEIDYIKEERHHIDVLTDGVVIKVNDVKT 295

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q+ LG   + PRW I++K+  ++ +T+LLD+   +GRTG +TP A LEPV+  G  +  A
Sbjct: 296 QEVLGYTNKFPRWSIAYKYDPEEYTTKLLDVVWNVGRTGKVTPSAILEPVDFSGVTVQRA 355

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TL+N D I             + +++G +V ++R+ +VIP+++ ++      +      P
Sbjct: 356 TLNNYDDI-----------LRKKVKIGSQVFIRRSNDVIPEILGVVDEN-QENTVEIKKP 403

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S +         +      C   ++C+ Q   R+ HF SRDA +IEGL ++ +
Sbjct: 404 TKCPYCHSEL--------IEGNVHIYCPNSISCTPQLKARMVHFASRDAMDIEGLSEKTV 455

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F    D    I+   D++ L+            +  F +    NL  +I   +   L 
Sbjct: 456 ELFINELD----IKEIYDLYDLKYEDLID------LESFKEKKTNNLLQAIENSKECDLN 505

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            FI+++GI +VG + AR LA+ Y S +N                  L+ V  +G+  +  
Sbjct: 506 HFIYAIGIPNVGVKTARDLAEKYKSLENLRNAKE----------DDLVEVEDIGEKTSHD 555

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           IVEF+ +     +++ LL++        E  VS+ +E  K+V TG+++  +R+  ++ + 
Sbjct: 556 IVEFFNDKNIKESIDKLLEKGIKIKEIEESEVSNFLEGMKIVITGSIENYKRNDIKKLIL 615

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
                V++ +S+ TD+++ G+ PGSK EKA QLG+K++  E+    ++
Sbjct: 616 DHNGDVTSSVSKNTDLVLCGEKPGSKKEKADQLGIKVLENEELFEFIK 663


>gi|167769644|ref|ZP_02441697.1| hypothetical protein ANACOL_00978 [Anaerotruncus colihominis DSM
           17241]
 gi|167668005|gb|EDS12135.1| hypothetical protein ANACOL_00978 [Anaerotruncus colihominis DSM
           17241]
          Length = 674

 Score =  423 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 171/711 (24%), Positives = 292/711 (41%), Gaps = 59/711 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++   L   ++ + D YY  + P + D  YD L      +          +  N P   +
Sbjct: 7   EKQRELNDRLNRYRDEYYNRNAPSVSDEVYDRLFDELKELEQE----TGIQMANSPTQTV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G      L K  H IP LSL+K  +  DL  F+                  L  K+DG  
Sbjct: 63  GYPAVSRLEKTRHEIPLLSLDKTKSSMDLLNFM------------GEQQVMLMLKLDGLT 110

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + YE G+ + AA RGDG  GE ++   RAI  IP    +   E + V GE +I  +DF
Sbjct: 111 VKLTYENGELLEAATRGDGDEGEIITHNTRAISGIP--SHITYKERLVVTGEGFIRPSDF 168

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAKGQYEM 257
             L   +     KPY N RN A+G +R ++          F   G+ +      +   ++
Sbjct: 169 EELKTSLQDSSGKPYKNGRNLAAGSIRLMDAKTCQERRLVFMPFGVLEGFPHLTRKSDKL 228

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEM-KSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            +       P    V +       V       +   +     IDG+V   ++ +  +  G
Sbjct: 229 RELRALGFQPCKYLVTKQKLTLENVEAGIYQLRQYATDKDIPIDGIVVSFNDIAYAQSCG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
                 +  +++KF +    + L  I+   GRTG + PVA   PV I G  ++ A+LHN 
Sbjct: 289 RTGHHYKDGLAYKFEDDLHESLLQYIEWTPGRTGEIAPVAVFTPVEIDGCEVSRASLHNL 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
            +I+ L+           +  G+R+LV +   +IP V +    +R   +   + P  CP 
Sbjct: 349 SFIEDLE-----------LMAGNRILVSKRNMIIPHVEEN--LDRGGFSMADTIPHVCPC 395

Query: 437 CQSRVVRDL----NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
           C              K+   +          C  ++L++  HFVS+ A  IEGL +  L+
Sbjct: 396 CGQPTRIHESSGKGEKSEDRIIKTLYCDNPDCETRRLKKFVHFVSQKAMEIEGLSEATLE 455

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F         I    DI+ L R +     +I  + GFG+ S   L+D+I + RN + ER
Sbjct: 456 KFIGQ----GFIHSYLDIYRLDRYRA----EIVRMDGFGEKSWQRLWDAIQQSRNTTFER 507

Query: 553 FIFSLGIRHVGAEIARSLAKYYL-SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           ++ S+ I  +G   ++ L + +      F   +               ++P  G+ +   
Sbjct: 508 YLISMDIPMIGNTASKVLGRVFHYDLDEFRDAVYGGY--------DFRQLPDFGETLHNN 559

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKA 666
           I +++    N C  E L   ++       +        +    K +V TG ++   R   
Sbjct: 560 IHDWFCVEDNFCIWEELQTMMNIQKPAVAEHSEDRVQDNPFVGKTIVVTGKVEPYTRDGI 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            + +  LGA   + +S+KTD ++ G+N GSKL KA+ LGV +++  +F  +
Sbjct: 620 NDLIESLGAHAGSSVSKKTDYLVCGENAGSKLSKARDLGVTVLSPAEFFSM 670


>gi|291522304|emb|CBK80597.1| DNA ligase, NAD-dependent [Coprococcus catus GD/7]
          Length = 653

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 179/708 (25%), Positives = 310/708 (43%), Gaps = 65/708 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
              +  L   ++     YY     ++ + EYDAL      +             N P   
Sbjct: 5   ADRIKELTGILNRASKAYYMQDTELMSNYEYDALYDELVQLEKE----TGITLSNSPTIH 60

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G E+   L K  H  P LSL+K  +++ L  ++                  L  K+DG 
Sbjct: 61  VGYEVLSELPKEEHEYPMLSLDKTKDVQVLADWL------------GDQTGVLSWKMDGL 108

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            I + Y+ G+ V A  RG+G+ GE ++   R    +P    +     + +RGE  I  +D
Sbjct: 109 TIVLTYDNGELVKAVTRGNGYVGEVITNNARVFKNVPHR--ITFKGKLTLRGEAVIKYSD 166

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQY 255
           F ALN   I      Y NPRN  SG +R+LN           F    +      F   + 
Sbjct: 167 FNALNS-QIEDSEAKYKNPRNLCSGSVRQLNNAVTAERNVYFFAFTLVVAEGMDFYNSRM 225

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           +  + +   GF V            + +Y  +     +   +  DGLV  +++ +  + L
Sbjct: 226 QQFEWLSSQGFDVVEH--VLVDRENLPTYVAQFADRIADNDFPSDGLVLILEDIAYGESL 283

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+ PR  I+ K+A++   TRLLD++    RTG++ P+A  EPV + G  ++ A+LHN
Sbjct: 284 GTTAKFPRNAIAFKWADEIRETRLLDVEWSASRTGLINPIAVFEPVELEGTTVSRASLHN 343

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
              ++ L            +  GD + V +A  +IP++ + +       +     P  CP
Sbjct: 344 ISILRALQ-----------LGKGDVIQVYKANMIIPQIAENLTR-----SDALEIPKKCP 387

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C                 +        C A+ ++R   FVSRDAFNIEG+ +  L+ F 
Sbjct: 388 VCGKPT-----EVRCVNDVSSLYCVNEECPAKHVKRFLLFVSRDAFNIEGMSEATLEKFI 442

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +S      +R PAD+F L          I  + GFG+ S   L  SI K R ++L + I+
Sbjct: 443 QS----GFLREPADMFHLDSY----HDVIVEMDGFGEKSYQRLMASIQKARKVTLAKLIY 494

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           SLGI ++G   AR L ++Y +         ++ A        L  +  +G +IA +  ++
Sbjct: 495 SLGILNIGLSNARLLCQHYRN---------DLQAMLAASTEELTAIDGIGPVIAGSFTDY 545

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLG 674
           + + ++   ++ LL EV        +      + K  V TG+L+  + R+  +  + + G
Sbjct: 546 FADEQHRIELKDLLGEVEIEQENFSEE-GRVFDGKVFVITGSLEHFKNRNNLKALLEEKG 604

Query: 675 AVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A V+  +S KT  +I  D  +  SK ++A++LGV ++ EE+ + ++++
Sbjct: 605 AKVAGSVSSKTSYLINNDSTSASSKNKRARELGVPVITEEELIDMMKK 652


>gi|269957188|ref|YP_003326977.1| DNA ligase, NAD-dependent [Xylanimonas cellulosilytica DSM 15894]
 gi|269305869|gb|ACZ31419.1| DNA ligase, NAD-dependent [Xylanimonas cellulosilytica DSM 15894]
          Length = 830

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 192/823 (23%), Positives = 323/823 (39%), Gaps = 137/823 (16%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            L  + A++  + L   +      YY++  P++ D+EYDA      A+  A P LA    
Sbjct: 10  ELDEQAAQRRWAELRDLVEADQRAYYEHDSPLVSDAEYDARLHELAALEAAHPALA---T 66

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           P  P  ++GG        V H    LSL+ ++++++LR +  R+ R         + +  
Sbjct: 67  PESPTQRVGGAAASGFTTVEHVERMLSLDNVFSVDELRDWDARVARDLGA---GDVGYLA 123

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189
           E KIDG  I + YE G+   AA RGDG +GEDV+     I  +P+ L     P ++EVRG
Sbjct: 124 EVKIDGLAIALLYEHGRLTRAATRGDGRTGEDVTVNALRIADVPQQLDGEGHPALVEVRG 183

Query: 190 EVYISKNDFLALNDEMIA---------------------------VGRKPYANPRNAASG 222
           E++I    F  LN+                                    +ANPRNAA+G
Sbjct: 184 EIFIPTASFTRLNELQEELRARVVEDTRARQGARFDEEKARLAALRRFPTFANPRNAAAG 243

Query: 223 ILRRLNPTD----------ITRYLNFFVHGLGKTSEIFAKG-----QYEMLQKMRCLGFP 267
            LR+                   L  +VHG+G       +      Q +        G P
Sbjct: 244 GLRQQLDKKDGLERDAGLARIESLRLYVHGIGALQWEAGEHAELGRQSDAYSYFATWGLP 303

Query: 268 VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
           V+   R  N    ++       + R  + +++DG+V KVD    Q++LG  +R+PRW I+
Sbjct: 304 VSPHNRVVNGIDAVIEMIEHFGAHRHDIEHELDGIVVKVDALPDQQRLGATSRAPRWAIA 363

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
           +K+  ++ +TRLL I + +GRTG  TP A +EPV + G+ +  ATLHN+D ++       
Sbjct: 364 YKYPPEEVNTRLLAIQVGVGRTGRATPYAVMEPVLVAGSTVRQATLHNQDVVR------- 416

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD--AQPFSFPSFCPICQSRVVRDL 445
                + +RVGD V++++AG+VIP+++  +            F  P+ CP C + +    
Sbjct: 417 ----AKGVRVGDVVVLRKAGDVIPEILGPVPAAADDGFPRHDFVMPAQCPECGTPLRPM- 471

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF--- 502
                +     RC    +C AQ   R++H  SR   ++EGLG+       +  +PA    
Sbjct: 472 ----KEGDVDLRCPNARSCPAQVRGRVEHIGSRGGLDVEGLGEVAAAALTQPLEPADPPL 527

Query: 503 -------------------SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
                               +R P             + ++    G    +         
Sbjct: 528 DTEAGLFSLTIEELLPIRVVVRDPETGLPRPYDGVGESAELPTADGATFTAKVVRPFQRL 587

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL--IRV 601
             R                 A I +    Y  +            A   D W  L  + +
Sbjct: 588 VER-TYPPGTETMTPAERRKAGIRKDHPVYGPAKSAQVLLDELDRAKTKDLWRQLVSLNI 646

Query: 602 PLVGDIIAQAIVE--------------------------------FYQNPRNICAVEALL 629
             VG + A+A+ +                                ++    ++  V++  
Sbjct: 647 RHVGPVAARALADWFGSLDAIRAASSEELAAVEGVGPVIGAELQAWFDVDWHVDIVDSWT 706

Query: 630 KEVSPSIGR-------------HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           +                             +    +V TG+L    R  A+E +   G  
Sbjct: 707 RAGVRFATPGHPGPEAMAAQAAAGAAPQGPLAGLTVVVTGSLDGFTRDGAKEAIIAAGGK 766

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +  +S+KTD ++VG+N GSK  KA++LG+ +++E  F+ LL 
Sbjct: 767 SAGSVSKKTDYVVVGENAGSKAAKAEELGLPVLDEAGFVALLD 809


>gi|229591993|ref|YP_002874112.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens SBW25]
 gi|254781395|sp|C3JXX6|DNLJ_PSEFS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|229363859|emb|CAY51325.1| DNA ligase [Pseudomonas fluorescens SBW25]
          Length = 785

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 213/631 (33%), Positives = 333/631 (52%), Gaps = 51/631 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +  A   +  L  E+  H+  Y+   +P I D+EYD L     A+    PDL      + 
Sbjct: 1   MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTR---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127
           P  ++G     +  +V H IP LSL   ++   + +F  R+                ++ 
Sbjct: 58  PTQRVGSAALSAFTQVKHDIPMLSLGNAFDETTMLEFDRRVTEGLDLPVGDLFGGGAAVE 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y+ G+ V  A RGDG +GED+S  IR +  IP  L  +  P  +E
Sbjct: 118 YSCEPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNIRTVRNIPLKLHGSGWPATLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + VG K +ANPRNAA+G LR+L+     +R L F  +G+  
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGV-- 235

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            +   +      LQ+++  G P+++ ++ A      + YY ++   R++LPY+IDG+V+K
Sbjct: 236 -TTDISDTHIGNLQQLKKWGMPISHELKLAKGIQDCLDYYRDIGERRNSLPYEIDGVVFK 294

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+PV + G
Sbjct: 295 VNSIASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 354

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A
Sbjct: 355 VTVSNATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVSVVPERRPENA 403

Query: 426 QPFSFPSFCPICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +    P  CP+C S       V R    +T    A +RC G LAC AQ  + + HFVSR 
Sbjct: 404 RAVQIPESCPVCGSHVERTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRR 463

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +I+GLG + ++     +     I  PAD++TL+  Q         + GF D+S   L 
Sbjct: 464 AMDIDGLGDKTIEQLVDEK----LIGSPADLYTLKYEQIID------LEGFADISSKKLI 513

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +I   +  +L RFI++LGI  VG E A+ LA+   S +   + +  +          L 
Sbjct: 514 TAIENSKTPTLARFIYALGIPDVGEETAKVLARSLASLERVQKALPEV----------LT 563

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
            +P VG  +A  I  F+++  N   + ALL 
Sbjct: 564 YLPDVGLEVAHEIHSFFEDSHNQDVIGALLS 594



 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 105/254 (41%), Gaps = 18/254 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   ++E + K   +      D    +      F      Q     + +    G   
Sbjct: 543 VLARSLASLERVQKALPEVLTYLPDVGLEVAHEIHSFFEDSHNQDVIGALLSPQACGLQL 602

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                 S     + +L   +  L +  VG   A+ LA  +++ +   +           D
Sbjct: 603 QDQGELSAEFAASTTLGGLLDKLHVPSVGPGAAQKLADKFVTLEGVIKA----------D 652

Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649
           WL +   +P   +  A+A+ EF+ N  N     A+E  LK+        +K V       
Sbjct: 653 WLDMRQALP---EKQAKAVREFFDNADNANHALAIEQQLKDFGMHWDSEKKVVEGLPEAG 709

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
              V TG+L+ + R  A++ +  LGA V+  +S KT  ++ G   GSKL KA +LG+K++
Sbjct: 710 HTWVLTGSLELMSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVL 769

Query: 710 NEEQFLFLLQQYNT 723
           +EE F+  L ++N 
Sbjct: 770 DEEAFVAFLAKHNI 783


>gi|166030629|ref|ZP_02233458.1| hypothetical protein DORFOR_00295 [Dorea formicigenerans ATCC
           27755]
 gi|166029631|gb|EDR48388.1| hypothetical protein DORFOR_00295 [Dorea formicigenerans ATCC
           27755]
          Length = 647

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 172/707 (24%), Positives = 312/707 (44%), Gaps = 65/707 (9%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L + ++     YYQ ++ I+ + EYD L      +             N P  ++G 
Sbjct: 1   MKELVELLNKASKAYYQDAEEIMSNYEYDKLYDELQELERE----LGITLSNSPTVRVGY 56

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           E+   L K  H  P LSL+K  ++E+L+ F+                  +  K+DG  I 
Sbjct: 57  EVVSELPKERHESPMLSLDKTKDVEELKNFV------------GDQKALMSWKMDGLTIV 104

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y  G    A  RG+G  GE ++   +    +P  L ++    + +RGE  I   DF  
Sbjct: 105 LTYRGGHLFKAVTRGNGEVGEVITNNAKVFKNVP--LQISYQGELILRGEAVIGYKDFEK 162

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           +N+  I      Y NPRN  SG +R+LN      R + F+   L    ++          
Sbjct: 163 INE-QIQEAEAKYKNPRNLCSGSVRQLNSEITAKRNVKFYAFTLVSAKDVDFHNSRACQM 221

Query: 260 -KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             ++  GF V              +   +     +   +  DGLV   D+ +  + LG  
Sbjct: 222 EWLKEQGFEVVEYHEVIRDTVE--AEVIKFSEKIAENDFPSDGLVLVYDDIAYGRSLGRT 279

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           ++ PR   + K+A++   T+LL+I+    RTG++ PVA  EPV + G  ++ A++HN   
Sbjct: 280 SKFPRDSFAFKWADEIRQTKLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVHNISI 339

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           ++ L+           + VGD + V +A  +IP++   +      D      P  CP+C 
Sbjct: 340 MEELE-----------LGVGDEIEVYKANMIIPQIAQNLTRSGVKD-----IPKVCPVCG 383

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
            +             A         C A+ ++    F SRDA NIEGL +  L+ F    
Sbjct: 384 GKT-----EIRQVSNAKALYCTNPECQAKHVKAFALFASRDALNIEGLSEATLEKFIDR- 437

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I+   DIF L + Q+    +I+ + GFG+ S  NL  ++ K +  +L + I++LG
Sbjct: 438 ---GFIKEFTDIFHLDKWQE----EIQTMEGFGEKSYKNLIANVEKAKVTTLPKVIYALG 490

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +G   A+ + + +           ++    +     L  +  VG+++A A V ++Q+
Sbjct: 491 IPGIGLANAKVICREF---------SGDVDRMIHATAEELAEIQGVGEVLAGAFVTYFQD 541

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVV 677
            +++ +++ L+ E+        ++          V TG+++    R + +E +  LG  V
Sbjct: 542 EKHVESLKRLIAELEIPKEEESESQ-QIFAGVNFVITGSVEHFANRGEVKELIESLGGKV 600

Query: 678 SAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +  ++ KT+ +I  D  +  SK +KA +LGV I++EEQF+ ++++  
Sbjct: 601 TGSVTSKTNYLINNDVTSTSSKNKKANELGVPIISEEQFIKMVEEQK 647


>gi|195938757|ref|ZP_03084139.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
           EC4024]
          Length = 556

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 215/591 (36%), Positives = 338/591 (57%), Gaps = 43/591 (7%)

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 1   MDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 60

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 61  LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 120

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V    +   ++++Y++++  R TL +DIDG+V KV+   
Sbjct: 121 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 180

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++N
Sbjct: 181 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 240

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  D +   F
Sbjct: 241 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 289

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P++CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 290 PTYCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 343

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 344 IDQLVEKE----YVHTPADLFKLTA------GKLTGLERMGPKSAQNVVNALEKAKETTF 393

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 394 ARFLYALGIREVGEATAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVAS 443

Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +  F+    N   +  LL E       I  + + + S    K +V TG+L ++ R  A+
Sbjct: 444 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 503

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             + +LGA V+  +S+KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 504 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 554


>gi|288958932|ref|YP_003449273.1| DNA ligase (NAD+) [Azospirillum sp. B510]
 gi|288911240|dbj|BAI72729.1| DNA ligase (NAD+) [Azospirillum sp. B510]
          Length = 788

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 259/626 (41%), Positives = 387/626 (61%), Gaps = 32/626 (5%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
            + I ++AL+ EQA  +L++L  EI++HD  Y+Q  +P I D++YDAL RR  AI   FP
Sbjct: 11  PRSIAVDALTPEQAAADLAALAAEIAHHDRLYHQQDQPEITDADYDALVRRNLAIEARFP 70

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           +L R+   + P  ++G        KV H+IP LSL   +  ED+ +F  R+ RF    DD
Sbjct: 71  ELRRA---DSPSLRVGAAPAAGFGKVRHAIPMLSLGNAFAPEDVAEFDARVRRFLGLADD 127

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
             + F  EPKIDG   ++RY+KG+ V AA RGDG  GE+V+A +R I  +P  L    PE
Sbjct: 128 APLTFVAEPKIDGLSCSLRYQKGELVLAATRGDGAEGENVTANVRTIRDVPHRLPAPFPE 187

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
           ++EVRGEVY+S++DFLA+N      G + +ANPRNAA+G LR+L+     +R L FF + 
Sbjct: 188 VLEVRGEVYMSRDDFLAMNAARAEKGEQLFANPRNAAAGSLRQLDSAITASRPLCFFGYA 247

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           LG+ SE  A+ Q+ + ++++  GF +N      +    +++YY  +  +R+ LP+DIDG+
Sbjct: 248 LGEASEPIAETQWGIRERLKGWGFQLNRPAELCDGKDKLLAYYEGIGRLRAGLPFDIDGV 307

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYKVD   LQ++LG  +R+PRW I+HKF  +QA TRL  I IQ+GRTG LTPVA L+ + 
Sbjct: 308 VYKVDSLELQQRLGFVSRAPRWAIAHKFPAEQAQTRLKAITIQVGRTGALTPVAELDDIT 367

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG +++ ATLHNED I             +DIRVGD V+V+RAG+VIP+VV++++++R 
Sbjct: 368 VGGVVVSRATLHNEDEIAR-----------KDIRVGDLVVVQRAGDVIPQVVEVVLSQRP 416

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D+ P+     CP+C S  +R+            RCTGGL C+AQ  ERL+HFVSRDAF+
Sbjct: 417 ADSVPYVPVETCPVCGSLAIREAGE------VVRRCTGGLICAAQAKERLRHFVSRDAFD 470

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGLG++ ++ F+        I+ P DIFTL+ R      ++    G+ + SV NL+ +I
Sbjct: 471 IEGLGEKIIEEFWDE----GFIKSPVDIFTLEDR-----VELIGRPGWKEKSVENLFKAI 521

Query: 543 NKRRN-ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII-AHNNDDWLSLIR 600
           N+RR+ I L R IF+LGIRHVG   A+SLA++Y + + +   +     A    +W  L  
Sbjct: 522 NQRRDGIELHRVIFALGIRHVGEVTAKSLARHYRTMRGWVDGMRAAERAMPGQEWRDLHA 581

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVE 626
           +  VG + A  I+ ++ +P +   ++
Sbjct: 582 LNGVGPVTADTILAWFADPESAAKLD 607



 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 94/175 (53%), Gaps = 1/175 (0%)

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA-HNNDDWLSLIRVPL 603
              + LE  I SLGI+ +    A++LA  Y +  ++   +   +A      WL L+  P 
Sbjct: 612 SEALRLETIIGSLGIKRLNTRAAQALATRYGNLSDWRAAMERAVAQAPGQPWLDLVATPD 671

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           VG++ A+ +  F+   RN   VEAL   +        K  +S I  K +VFTGTL+++ R
Sbjct: 672 VGEVAAEELAGFFAEERNRLIVEALAGRLIVLEAAVPKAGNSPIAGKTVVFTGTLERMTR 731

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +A+     LGA V+  +S KTD ++ G + GSK  KA+ LGV+I+ EE++L  +
Sbjct: 732 SEAKARAESLGAKVAGSVSGKTDYLVAGADAGSKAAKAKDLGVEILTEEEWLAKI 786


>gi|160881055|ref|YP_001560023.1| DNA ligase, NAD-dependent [Clostridium phytofermentans ISDg]
 gi|190359247|sp|A9KPL0|DNLJ_CLOPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160429721|gb|ABX43284.1| DNA ligase, NAD-dependent [Clostridium phytofermentans ISDg]
          Length = 653

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 191/712 (26%), Positives = 324/712 (45%), Gaps = 65/712 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  ++ ++ L + +      Y Q  + I+ + EYD L      +               
Sbjct: 1   MQGKKQRITQLTELLDEAARVYEQEDREIMSNFEYDKLYDELKKLEEE----TGIVLAGS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+G E+   L K  H    LSL+K   +  L  ++             +    L  K
Sbjct: 57  PTRKVGYEILSELPKERHESAMLSLDKTKEVPALIDWL------------GNKEGILSWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + Y  G+ V A  RG+G  GE V+   +    +P  L++     + +RGE  I
Sbjct: 105 MDGLTIVLTYRNGELVKAVTRGNGEVGEVVTNNAKVFKNLP--LTIPYEGELIIRGEAVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEIFA 251
             +DF  +N   I      Y NPRN  SG +R+LN      R +NFF   L         
Sbjct: 163 RYSDFEMINA-QIPDADAKYKNPRNLCSGSVRQLNNAITAKRNVNFFAFALIRMDEMNRF 221

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           K   E    ++ LGF V     +  T   +       +S   T  +  DGLV   ++ + 
Sbjct: 222 KTMMEQFNWLKELGFDVVE--EKLVTAENMAETMEYFESHIITNDFPSDGLVLFFNDIAY 279

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            + LG  ++ PR  I+ K+ ++   T L +I+    RTG++ PVA  EPV + G  ++ A
Sbjct: 280 GESLGRTSKFPRNGIAFKWRDEIKETTLQEIEWSASRTGLINPVAIFEPVELEGTTVSRA 339

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN   ++GL+           + +GD+V V +A  +IP++ D +       +     P
Sbjct: 340 SLHNISIMEGLE-----------LGLGDKVTVYKANMIIPQIADNLTR-----SGHLPIP 383

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C    +   +                 C A++++   HFVSRDA NIEGL +  +
Sbjct: 384 KTCPVCGGDTMIKQD-----SDVKSLYCMNPECLAKKIKSFTHFVSRDAMNIEGLSEATI 438

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +           I+  ADIF ++  ++    +I  + GFG+ S  NL DS+ K R   L 
Sbjct: 439 EKLIAK----GLIKELADIFHVKDFKE----EITTMEGFGEKSFRNLVDSVEKARTPILA 490

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           +FI+SLGI +VG   A+ + K +           +    +N     L ++P +G +IA+A
Sbjct: 491 KFIYSLGIANVGLANAKLICKEFG---------YDFNKVSNATVDELTQIPQIGYVIAEA 541

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670
            V ++Q P N   +E LLKE++          S +++    V TG+++    R++ ++ +
Sbjct: 542 FVSYFQKPENKLIIEDLLKEITFE-KEEAAGGSEKLKGLTFVITGSVEHFTNRNEVKDVI 600

Query: 671 TQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            Q G  V+  ++ KT+ +I  DN    SK +KA++LG+ ++ EE+F+ LL +
Sbjct: 601 EQHGGKVTGSVTAKTNYLINNDNTSSSSKNKKARELGIPVITEEEFIQLLNE 652


>gi|283797409|ref|ZP_06346562.1| DNA ligase, NAD-dependent [Clostridium sp. M62/1]
 gi|291074764|gb|EFE12128.1| DNA ligase, NAD-dependent [Clostridium sp. M62/1]
 gi|295090074|emb|CBK76181.1| DNA ligase, NAD-dependent [Clostridium cf. saccharolyticum K10]
          Length = 684

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 185/718 (25%), Positives = 316/718 (44%), Gaps = 69/718 (9%)

Query: 11  ALSIEQAR----KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            + IE+ +    + +  L   +      YYQ S+ ++ + EYD L      +        
Sbjct: 19  QMKIEEKQSGKLERMKELIGILREAGRAYYQESREVMSNFEYDRLYDELLELERE----T 74

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
            +   N P   +G E+  SL K  H  P LSL K  ++E+L++++               
Sbjct: 75  GTVFGNSPTQNVGYEVVSSLPKERHESPMLSLNKTKSVEELKEWL------------GEQ 122

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
              L  K+DG  I + YE+GK V A  RG+G  GE ++   +    +P   ++     + 
Sbjct: 123 SGLLSWKMDGLTIVLTYEEGKLVKAVTRGNGEIGEVITNNAKTFVNVPM--TIPYKGQLV 180

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           +RGE  I  +DFL +N+E+  V    Y NPRN  SG +R+LN      R + FF   L  
Sbjct: 181 LRGEAVIRYSDFLKINEEIEDV-DARYKNPRNLCSGSVRQLNSEVTAQRKVRFFAFSLVS 239

Query: 246 TSEIFAKGQYEMLQ-KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
              +  K   E     ++  GF                                 DGLV 
Sbjct: 240 ADGVDFKNSREEQFLWLKSQGFETVEYRLVTADTLEAAVAS--FSEAVEKNDVPSDGLVL 297

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
             D+ +  + LG  A+ PR  I+ K+A++   T L  I+    RTG++ PVA  EPV + 
Sbjct: 298 LFDDIAYGQSLGRTAKFPRDSIAFKWADEIQETTLSYIEWSASRTGLINPVAVFEPVELE 357

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ A++HN   ++ L+           +  GDR+ V +A  +IP++ D +      D
Sbjct: 358 GTTVSRASVHNISIMEALE-----------LGEGDRITVYKANMIIPQIADNLTRSGVRD 406

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                 P  CP+C  +                       C A++++    F SRDA NI 
Sbjct: 407 -----IPETCPVCGGKT-----EVRKVNDVKSLYCTNPDCQAKKIKSFTLFTSRDALNIG 456

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           GL +  L+ F         I   ADIF L R ++    +I N+ GFG  S   L +++ +
Sbjct: 457 GLSEATLEKFIAR----GFIHEYADIFHLDRHEE----EIVNMEGFGKKSFDKLTEAVKR 508

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
             + +L R ++ LG+  +G   A+ L +++           +  A        L  V  +
Sbjct: 509 AADTTLPRVVYGLGVAGIGLANAKMLCRHFQ---------YDFHAMRCAGKEELTAVDGI 559

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQ- 662
           G+++A A ++F+ + +N   V+ L++E++      E+   +E+ E    V TG+++  + 
Sbjct: 560 GEVLADAWIQFFADEKNNQMVDRLMEELTIEAAPKEEGERTELFEGLVFVITGSVEHFKN 619

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLL 718
           R + QE +   G  V+  ++ KT  +I  D     SK +KA++LG+ ++ EEQF+ +L
Sbjct: 620 RKEVQEIIESRGGKVTGSVTAKTSYLINNDAASNSSKNKKARELGIPVITEEQFIEML 677


>gi|154499783|ref|ZP_02037821.1| hypothetical protein BACCAP_03440 [Bacteroides capillosus ATCC
           29799]
 gi|150271381|gb|EDM98638.1| hypothetical protein BACCAP_03440 [Bacteroides capillosus ATCC
           29799]
          Length = 673

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 183/707 (25%), Positives = 301/707 (42%), Gaps = 58/707 (8%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
             L   ++ + + YY  + P + D+ YD L      +  A       +  N P N +G  
Sbjct: 10  RELNDRLNRYRNEYYNLNSPSVSDAVYDRLFEELQELESA----TGVQMSNSPTNTVGYP 65

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
               L K  HSIP LSL+K+ N E+L +F+                     K+DG  I +
Sbjct: 66  AVSKLEKTNHSIPLLSLDKVKNTEELCRFM------------GEHQVMFMLKLDGLTIKL 113

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
            YE GK V AA RGDG  GE V+   RAI  IP   ++   + + V GE +I  +DF  L
Sbjct: 114 TYEGGKLVEAATRGDGDVGEIVTHNTRAIGGIP--ENIQYEDRLVVTGEAFIRPSDFEQL 171

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
              ++    KPY N RN A+G +R  +    + R L F    + +  E   +    +   
Sbjct: 172 KTTLVDSDGKPYKNGRNLAAGSVRLFDAGACLGRRLMFMPFNVLEGMEELPRKSERLKAL 231

Query: 261 MRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
                 P      ++  T         ++K   +     IDG+V   ++ +L K  G   
Sbjct: 232 RPLGFLPCKYMVTKRPLTQKETEDGIRQLKEYAADADIPIDGIVITYNDIALSKSCGRTG 291

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
              +  ++ KF +    T+L  I+   GRTG + PVA  EPV I G  ++ A+LHN  +I
Sbjct: 292 HHYKDGLAFKFEDDLFQTKLQTIEWTPGRTGEIAPVAIFEPVEIDGCEVSRASLHNLSFI 351

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           + L+           +  G R+LV +   +IP V +    +R   +     P  CP C  
Sbjct: 352 EDLE-----------LAPGCRILVSKRNMIIPHVEEN--LDRGNFSMDAVIPHQCPCCGE 398

Query: 440 RVVRDL----NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
                          + V         AC  ++L++  HFVS+ A NIEGL +  L+   
Sbjct: 399 PTRIHETSGRGENGEERVIKTLFCDNAACETRRLKQFVHFVSKKAMNIEGLSEGTLEKLI 458

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   I    DI+ L + +     +I  + GFG+ S   L+D+I + R+ + ER++ 
Sbjct: 459 GR----GWIHSYLDIYRLDQHRN----EIIRMDGFGEKSWQRLWDAIQQSRSTTFERYVI 510

Query: 556 SLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           ++ I  VG   ++ L + +  S   F   +               ++P  G+ +   I E
Sbjct: 511 AMDIPMVGNTASKVLCREFHGSLDEFRDAVYGGY--------DFRQLPDFGETLHNNIQE 562

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV----SSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++    N C  E L   ++        N      +    K +V TG ++   R +    +
Sbjct: 563 WFNKEENFCIWEELQMMMNIQKPVETDNQTINRDNSFSGKTIVVTGKVEPYTRDEMNSLI 622

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             LGAV  + ++RKTD ++ G+  GSKL KA++L + ++  E+F  +
Sbjct: 623 ASLGAVAGSSVTRKTDYLVCGEKAGSKLSKARELDIPVLTPEEFFRM 669


>gi|315655583|ref|ZP_07908481.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii ATCC 51333]
 gi|315489647|gb|EFU79274.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii ATCC 51333]
          Length = 794

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 197/818 (24%), Positives = 335/818 (40%), Gaps = 127/818 (15%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI-----ILDSEYDALKRRC 55
           MKK+  IP      E A  + + L  +I      YY    P      + D+EYDAL  + 
Sbjct: 1   MKKKTSIP------ESALAQHADLVDQIEAARTDYYDQ-TPETGVTRLSDAEYDALFVQL 53

Query: 56  DAIAHAFPDLARSEDPNGPLNKIGG----EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI 111
             +  A+PDL     P+ P   +GG              H     S++ +++  ++  + 
Sbjct: 54  QLLEAAYPDLV---TPDSPTQTVGGGGETANTEGFPPHHHLCQMGSIDDVFSYAEVDAWW 110

Query: 112 TRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP 171
            R+ +     +      + E K+DG  +++ Y  G     A RGDG +GEDV+  ++ I 
Sbjct: 111 ARVEKSL---EGQDFSVSAEVKVDGLAMSLTYLHGALTVGATRGDGFTGEDVTENVKTIA 167

Query: 172 TIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230
           T+P  LS    PE++E+RGEVY+   DF A+N      G K +ANPRNAA+G L++ +P 
Sbjct: 168 TVPVRLSGENVPELVEIRGEVYLPLADFAAMNAIRERDGEKLFANPRNAATGSLKQKDPV 227

Query: 231 DITRYL-NFFVHGLGKTSEIFA------KGQYEMLQKMRCLGFPVNNGV--------RQA 275
              +    F  HG+G+            + Q +  + +   G                  
Sbjct: 228 QAAKRPLAFLAHGVGEVRWNDPGAAAHLETQEDFYELLESWGLHSVRETPASLGLPLAGM 287

Query: 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQA 335
           +T   + +  ++M + R    + IDG+V KVD F+ +  LG  AR+PRW  ++KF  ++ 
Sbjct: 288 HTLAEVHTVLDQMTAHRHDFAHQIDGVVLKVDSFAQRDALGSTARAPRWACAYKFPPEEV 347

Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395
            TRLL I++Q+GRTG +TP   +E V + G+ ++ ATLHN   +             +D+
Sbjct: 348 HTRLLGIEVQVGRTGRVTPFGVMERVLVDGSYVSRATLHNAKEVAR-----------KDV 396

Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455
           R GD V++++AG++IP+++  +++ R      +  P  CP C + +         +    
Sbjct: 397 RPGDTVVLRKAGDIIPEILGPVISLRPAGLPEWVMPDTCPSCGTELG-----AQKEGDID 451

Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF------------- 502
            RC     C AQ  ERL H  SR A +IEGLG++      + E                 
Sbjct: 452 LRCPNQSGCPAQITERLIHVGSRYALDIEGLGEEGALALTQPEFGRGDVAAALAAGGQCE 511

Query: 503 ------------------------------SIRIPADIFTLQRRQQTSTTKIENILGFGD 532
                                          +   A +F L             I G   
Sbjct: 512 LEDGTIVAVPSGEPRSLEAIEDLLPPAQSPVLTSEAGLFALHPEDLRDVMVWREIPGTAG 571

Query: 533 VSVTNL--------------YDSINKRRNISLERFIFSLGIRHVGAEIARSL-------- 570
                +               ++  +R    +   +       + A  ++ L        
Sbjct: 572 RDWQQVRFFWAKPRPLPKSAQEATGQRFGPPVAGKVVQTFFEQLQAAKSKELWRVLVALS 631

Query: 571 AKYYLSYQN--FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            ++         A++   + A        L  V  VG++IA +I +++  P +   V+A 
Sbjct: 632 IRHLGPVAARTIARQFATMSAIRAASVEQLGEVEGVGEVIAASIHDWFTVPWHQEIVDAW 691

Query: 629 LKEVSPSIGRHEKNVSSEIE------NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
                 + G+ +    + +          +V TG +    R  AQ  V   G   +  +S
Sbjct: 692 EAAGVGAAGQADAVSGTPLALEPTLDGLTVVITGNVPGYTRESAQLAVEARGGKATGSVS 751

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +KTD+++ G   GSKL KAQ LG+ ++    F  LL++
Sbjct: 752 KKTDLVVAGAGAGSKLAKAQALGIPVIESAGFEALLEK 789


>gi|330723500|gb|AEC45870.1| DNA ligase, NAD-dependent [Mycoplasma hyorhinis MCLD]
          Length = 673

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 213/707 (30%), Positives = 355/707 (50%), Gaps = 49/707 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN- 72
            +QA+K++  L Q++   +  Y+    PI+ D  YD    +   +   +  L   E+ N 
Sbjct: 12  EKQAKKQIEELRQKLHLWNHHYFDLDIPIVDDLVYDQELNKLKKLEKKYFYLFTLEENNA 71

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +G +++    K+ HS P LSL K +++E+L KF  +  +      D +  F +EP
Sbjct: 72  SPTQIVGAKVDERFQKIKHSQPMLSLNKAYSLEELEKFAQKTIKI-----DENASFYVEP 126

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  I++ Y++GKF  A  RGDG +GEDVS  I  I       S+N  + IE+RGEV+
Sbjct: 127 KIDGISISLHYKQGKFTQAVTRGDGTTGEDVSHNIENIDAKYVPKSINYFDDIEIRGEVF 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           +    F  +N E   + +  + NPRNAA+G LRRL+   +    L  FV+ +        
Sbjct: 187 LDLESFKNMNLEQARLEKPLFLNPRNAAAGQLRRLDSKSNKLANLKVFVYQVVNPELHNL 246

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E +Q ++ LGF  NN  +     H       E++   + L Y+IDG+V KV+EF L
Sbjct: 247 ATVEESIQFLQTLGFNTNNLGQHKANIHQSYQLIEEIQEKENKLNYEIDGVVIKVNEFKL 306

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             +LG  ++ P   I+ KF++K   T+L  I   +GRTG +T  A LEPV + G+ I+ A
Sbjct: 307 YDELGTTSKFPHSAIAFKFSDKVVQTKLKHIFATVGRTGKITYNAVLEPVLLQGSTISAA 366

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN +YIK L            I     V +K+AGE+IP+V+  +      +   F   
Sbjct: 367 TLHNYNYIKDLA-----------INTNSMVYIKKAGEIIPQVIQSVEKFEKTN---FEKI 412

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S +         +      C        Q   ++ HF S++  +I+ LG++++
Sbjct: 413 TNCPECNSDL------IDSETGIDQFCINPNCLGIQL-RKIIHFCSKEGLDIKDLGEKKI 465

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F+        IR   DIF L     T   +I  +  F   S+  L ++I K ++ +L+
Sbjct: 466 ELFWDQN----LIRSIPDIFRLA----TKIEEISKLKSFQQKSILKLINAIEKAKHTTLD 517

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + IF+LGI+H+G + A+ LA+   + +               ++ + +    +G+   ++
Sbjct: 518 KLIFALGIKHIGQKTAKMLAQKVDNLEQL----------KTFNFDTFLEDKDIGEKTVES 567

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +  +++N  N+  +  L++         E+  S+ +EN   V TGTL +  R + +  + 
Sbjct: 568 LKNYFKNEANLQIINELIQ--VNFEIIKEETYSNILENLSFVITGTLSR-SRSQIESIIL 624

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           Q    VS+ +S+ T  +I+G+N GSK +KA+ LGVKI++EE+F  LL
Sbjct: 625 QNKGKVSSSVSKNTSYLILGENGGSKEDKARNLGVKILSEEEFFKLL 671


>gi|154502352|ref|ZP_02039412.1| hypothetical protein RUMGNA_00165 [Ruminococcus gnavus ATCC 29149]
 gi|153796977|gb|EDN79397.1| hypothetical protein RUMGNA_00165 [Ruminococcus gnavus ATCC 29149]
          Length = 655

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 182/711 (25%), Positives = 313/711 (44%), Gaps = 65/711 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E  +K +  L + ++     Y Q    I+ + EYD L    + +         +   + 
Sbjct: 1   MEAKKKRMQELVELLNRARRAYEQEDTEIMSNYEYDRLYDELEGLERE----LGTTLASS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E+   L K  H  P LSL+K  ++E L+ F+                  +  K
Sbjct: 57  PTVNVGYEVLSELPKERHEKPMLSLDKTKDVEQLKSFL------------GEQKAVISWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + Y+ G+   A  RG+G  GE ++   +    +P  L +     + +RGE  I
Sbjct: 105 MDGLTIVLTYQNGRLQKAVTRGNGEVGEVITNNAKVFRNLP--LQIPYQGELILRGEAVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
              DF  +N+  I      Y NPRN  SG +R+LN      R + FF   L K      +
Sbjct: 163 GYKDFERINE-QIEDVDARYKNPRNLCSGSVRQLNNEITARRNVKFFAFTLVKADGAEFE 221

Query: 253 G-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             + + L  +   GF V                +           +  DGLV   D+ + 
Sbjct: 222 NSRMQQLSWLEKQGFEVVEHHLADRASIEEEVAW--FSEQIVHNDFPSDGLVLVYDDIAY 279

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            + LG  A+ PR   + K+A++   T LL+I+    RTG++ PVA  EPV + G  ++ A
Sbjct: 280 GQSLGTTAKFPRDSYAFKWADEIRETTLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRA 339

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           ++HN   ++ L+           + VGD + V +A  +IP++ + +      D      P
Sbjct: 340 SVHNISIMEDLE-----------LGVGDVIQVYKANMIIPQIAENLTRSGVKD-----IP 383

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C       +  +T  L           C A+ L+    FVSRDA NIEGL +  L
Sbjct: 384 QVCPVCGGATKIKMENETKTL-----YCTNPECQAKHLKSFALFVSRDAMNIEGLSEATL 438

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F         IR   DI+ L R ++     I+ + GFG+ S   L  S+   R+ ++ 
Sbjct: 439 EKFIGE----GFIRDFTDIYHLDRYEE----TIKTLEGFGEKSYAKLITSVENSRSTTMP 490

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + I+SLGI ++G   A+ + + + +         +           L+ +  VG++IA+ 
Sbjct: 491 KVIYSLGIANIGLSNAKMICRAFDN---------DPQRMMQATVEELVDIQGVGEVIART 541

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670
            V+++ +  +    + LL+EV       E++     EN   V TG+++    R + +E +
Sbjct: 542 FVDYFSDETHRDLFKRLLQEVKLQKEEGEESA-QIFENMNFVITGSVEHFANRREVKEII 600

Query: 671 TQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G  V+  ++ KT+ +I  D  +  SK +KA++L V I++E QFL +L+
Sbjct: 601 ESRGGKVTGSVTGKTNYLINNDVQSASSKNKKAKELNVPIISESQFLEMLE 651


>gi|323485875|ref|ZP_08091210.1| hypothetical protein HMPREF9474_02961 [Clostridium symbiosum
           WAL-14163]
 gi|323400863|gb|EGA93226.1| hypothetical protein HMPREF9474_02961 [Clostridium symbiosum
           WAL-14163]
          Length = 674

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 170/711 (23%), Positives = 292/711 (41%), Gaps = 59/711 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++   L   ++ + D YY  + P + D  YD L      +          +  N P   +
Sbjct: 7   EKQRDLNDRLNRYRDEYYNRNAPSVSDEVYDRLFDELKELEQE----TGIQMANSPTQTV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G      L K  H IP LSL+K  +  DL  F+                  L  K+DG  
Sbjct: 63  GYPAVSRLEKTRHEIPLLSLDKTKSSMDLLNFM------------GEQQVMLMLKLDGLT 110

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + YE G+ + AA RGDG  GE ++   RAI  IP    +   E + V GE +I  +DF
Sbjct: 111 VKLTYENGELLEAATRGDGDEGEIITHNTRAISGIP--SHITYKERLVVTGEGFIRPSDF 168

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIFAKGQYEM 257
             L   +     KPY N RN A+G +R ++          F   G+ +      +   ++
Sbjct: 169 EELKTSLQDSSGKPYKNGRNLAAGSIRLMDAKICQERRLVFMPFGVLEGFPHLTRKSDKL 228

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEM-KSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            +       P    V +       V       +   +     IDG+V   ++ +  +  G
Sbjct: 229 RELRALGFQPCKYLVTKQKLTLENVEAGIYQLRQYATDKDIPIDGIVVSFNDIAYAQSCG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
                 +  +++KF +    + L  I+   GRTG + PVA   PV I G  ++ A+LHN 
Sbjct: 289 RTGHHYKDGLAYKFEDDLHESLLQYIEWTPGRTGEIAPVAVFTPVEIDGCEVSRASLHNL 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
            +I+ L+           +  G+R+LV +   +IP V +    +R   +   + P  CP 
Sbjct: 349 SFIEDLE-----------LMAGNRILVSKRNMIIPHVEEN--LDRGGFSMVDTIPRVCPC 395

Query: 437 CQSRVVRDL----NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
           C                   +          C  ++L++  HFVS+ A +IEGL +  L+
Sbjct: 396 CGQPTRIHESSGKGENGEDRIIKTLYCDNPDCETRRLKKFVHFVSQKAMDIEGLSEAALE 455

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F         I    DI+ L R +     +I  + GFG+ S   L+D+I + RN + ER
Sbjct: 456 KFIGQ----GFIHSYLDIYRLDRYRA----EIVRMDGFGEKSWQRLWDAIQQSRNTTFER 507

Query: 553 FIFSLGIRHVGAEIARSLAKYYL-SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           ++ S+ I  +G   ++ L + +      F   +               ++P  G+ +   
Sbjct: 508 YLISMDIPMIGNTASKVLGRVFHYDLDEFRDAVYGGY--------DFRQLPDFGETLHNN 559

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I +++    N C  E L   ++           ++   +    K +V TG ++   R   
Sbjct: 560 IHDWFCVEDNFCIWEELQTMMNIQKPAVVEHSEDREQDNPFVGKTIVVTGKVEPYTRDGI 619

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            + +  LGA   + +S+KTD ++ G+N GSKL KA+ LGV +++  +F  +
Sbjct: 620 NDLIESLGAHAGSSVSKKTDYLVCGENAGSKLSKARDLGVTVLSPAEFFSM 670


>gi|304390721|ref|ZP_07372673.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304325604|gb|EFL92850.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 799

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 198/822 (24%), Positives = 340/822 (41%), Gaps = 131/822 (15%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI-----ILDSEYDALKRRC 55
           +KK+  IP      E A  + + L  +I      YY    P      + D+EYDAL  + 
Sbjct: 2   VKKKTSIP------ESALAQHADLVDQIEAARTDYYDQ-TPETGVTRLSDAEYDALFVQL 54

Query: 56  DAIAHAFPDLARSEDPNGPLNKIGG----EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI 111
             +  A+PDL     P+ P   +GG              H     S++ +++  ++  + 
Sbjct: 55  QLLEAAYPDLV---TPDSPTQTVGGSGETANTEGFPPHHHLCQMGSIDDVFSYAEVDAWW 111

Query: 112 TRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP 171
            R+ +     +      + E K+DG  +++ Y  G     A RGDG +GEDV+  ++ I 
Sbjct: 112 ARVEKSL---EGQDFSVSAEVKVDGLAMSLTYLHGTLAVGATRGDGFTGEDVTENVKTIA 168

Query: 172 TIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230
           T+P  LS    PE++E+RGEVY+   DF A+N      G K +ANPRNAA+G L++ +P 
Sbjct: 169 TVPVRLSGENVPELVEIRGEVYLPLADFAAMNAARERDGEKLFANPRNAATGSLKQKDPV 228

Query: 231 DITRYL-NFFVHGLGKTSEIFA------KGQYEMLQKMRCLGFPVNNGV--------RQA 275
              +    F  HG+G+            + Q +  + +   G                  
Sbjct: 229 QAAKRPLAFLAHGVGEVRWADPGAAAHLETQEDFYELLESWGLHSVRETPASLGMSLAGI 288

Query: 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQA 335
           ++   I +  ++M + R    + IDG+V KVD F+ +  LG  AR+PRW  ++KF  ++ 
Sbjct: 289 HSLAEIHTVLDQMTAHRHDFAHQIDGVVLKVDSFAQRDALGSTARAPRWACAYKFPPEEV 348

Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395
            TRLL I++Q+GRTG +TP   +E V + G+ ++ ATLHN   +             +D+
Sbjct: 349 HTRLLGIEVQVGRTGRVTPFGVMERVLVDGSYVSRATLHNAKEVAR-----------KDV 397

Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455
           R GD V++++AG++IP+++  +++ R      +  P  CP C + +         +    
Sbjct: 398 RPGDTVVLRKAGDIIPEILGPVMSLRPAGLPEWVMPDTCPSCGTELG-----AQKEGDID 452

Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF------------- 502
            RC     C AQ  ERL H  SR+A +IEGLG++      + E                 
Sbjct: 453 LRCPNQSGCPAQITERLIHVGSRNALDIEGLGEEGALALTQPEFGRGDVAAALAAGGHCE 512

Query: 503 ------------------------------SIRIPADIFTLQRRQQTSTTKIENILGFGD 532
                                          +   A +F LQ            I G G 
Sbjct: 513 LEDGTIVAVPSGEPRSLEAIEDLLPPPQSPVLTSEAGLFALQPEDLRDVMVWREIPGTGG 572

Query: 533 VSVTNL--------------YDSINKRRNISLERFIFSLGIRHVGAEIARSL-------- 570
                +               ++  +R    +   +       + A  ++ L        
Sbjct: 573 RDWQQVRFFWAKPRPLPKAAQEATGQRFGPPVAGKVVQTFFEQLQAAKSKELWRVLVALS 632

Query: 571 AKYYLSYQN--FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            ++         A++   + A        L     +G++IA +I +++  P +   V+A 
Sbjct: 633 IRHLGPVAARTIARQFVTMSALRVASAEQLGEAEGIGEVIAASIRDWFTVPWHQEIVDAW 692

Query: 629 LKEVSPSIGRHE----------KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
                 ++ + E           N++  +E   +V TG +    R  AQ  V   G   +
Sbjct: 693 EAAGVGAVSKAEGASEASLAGDTNLAPTLEGLTVVITGNIPGYTRESAQLAVEARGGKAT 752

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +S+KTD+++ G   GSKL KAQ LG+ ++    F  LL++
Sbjct: 753 GSVSKKTDLVVAGAGAGSKLSKAQALGIPVIESAGFEALLEK 794


>gi|298345134|ref|YP_003717821.1| DNA ligase (NAD(+)) [Mobiluncus curtisii ATCC 43063]
 gi|298235195|gb|ADI66327.1| DNA ligase (NAD(+)) [Mobiluncus curtisii ATCC 43063]
          Length = 799

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 199/822 (24%), Positives = 340/822 (41%), Gaps = 131/822 (15%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI-----ILDSEYDALKRRC 55
           +KK+  IP      E A  + + L  +I      YY    P      + D+EYDAL  + 
Sbjct: 2   VKKKTSIP------ESALAQHADLVDQIEAARTDYYDQ-TPETGVTRLSDAEYDALFVQL 54

Query: 56  DAIAHAFPDLARSEDPNGPLNKIGG----EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI 111
             +  A+PDL     P+ P   +GG              H     S++ +++  ++  + 
Sbjct: 55  QLLEAAYPDLV---TPDSPTQTVGGSGETANTEGFPPHHHLCQMGSIDDVFSYAEVDAWW 111

Query: 112 TRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP 171
            R+ +     +      + E K+DG  +++ Y  G     A RGDG +GEDV+  ++ I 
Sbjct: 112 ARVEKSL---EGQDFSVSAEVKVDGLAMSLTYLHGTLAVGATRGDGFTGEDVTENVKTIA 168

Query: 172 TIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230
           T+P  LS    PE++E+RGEVY+   DF A+N      G K +ANPRNAA+G L++ +P 
Sbjct: 169 TVPVRLSGENVPELVEIRGEVYLPLADFAAMNAARERDGEKLFANPRNAATGSLKQKDPV 228

Query: 231 DITRYL-NFFVHGLGKTSEIFA------KGQYEMLQKMRCLGFPVNNGV--------RQA 275
              +    F  HG+GK            + Q +  + +   G                  
Sbjct: 229 QAAKRPLAFLAHGVGKVRWADPGAAAHLETQEDFYELLESWGLHSVRETPASLGLSLAGI 288

Query: 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQA 335
           ++   I +  ++M + R    + IDG+V KVD F+ +  LG  AR+PRW  ++KF  ++ 
Sbjct: 289 HSLAEIHTVLDQMTAHRHDFAHQIDGVVLKVDSFAQRDALGSTARAPRWACAYKFPPEEV 348

Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395
            TRLL I++Q+GRTG +TP   +E V + G+ ++ ATLHN   +             +D+
Sbjct: 349 HTRLLGIEVQVGRTGRVTPFGVMERVLVDGSYVSRATLHNAKEVAR-----------KDV 397

Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455
           R GD V++++AG++IP+++  +++ R      +  P  CP C + +         +    
Sbjct: 398 RPGDTVVLRKAGDIIPEILGPVMSLRTAGLPEWVMPDTCPSCGTELG-----AQKEGDID 452

Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF------------- 502
            RC     C AQ  ERL H  SR+A +IEGLG++      + E                 
Sbjct: 453 LRCPNQSGCPAQITERLIHVGSRNALDIEGLGEEGALALTQPEFGRGDVAAALAAGGHCE 512

Query: 503 ------------------------------SIRIPADIFTLQRRQQTSTTKIENILGFGD 532
                                          +   A +F LQ            I G G 
Sbjct: 513 LEDGTIVAVPSGEPRSLEAIEDLLPPPQSPVLTSEAGLFALQPEDLRDVMVWREIPGTGG 572

Query: 533 VSVTNL--------------YDSINKRRNISLERFIFSLGIRHVGAEIARSL-------- 570
                +               ++  +R    +   +       + A  ++ L        
Sbjct: 573 RDWQQVRFFWAKPRPLPKAAQEATGQRFGPPVAGKVVQTFFEQLQAAKSKELWRVLVALS 632

Query: 571 AKYYLSYQN--FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            ++         A++   + A        L     +G++IA +I +++  P +   V+A 
Sbjct: 633 IRHLGPVAARTIARQFVTMSALRVASAEQLGEAEGIGEVIAASIRDWFTVPWHQEIVDAW 692

Query: 629 LKEVSPSIGRHE----------KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
                 ++ + E           N++  +E   +V TG +    R  AQ  V   G   +
Sbjct: 693 EAAGVGAVSKAEGASEASLAGDTNLAPTLEGLTVVITGNIPGYTRESAQLAVEARGGKAT 752

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +S+KTD+++ G   GSKL KAQ LG+ ++    F  LL++
Sbjct: 753 GSVSKKTDLVVAGAGAGSKLSKAQALGIPVIESAGFEALLEK 794


>gi|256545196|ref|ZP_05472562.1| DNA ligase, NAD-dependent [Anaerococcus vaginalis ATCC 51170]
 gi|256399237|gb|EEU12848.1| DNA ligase, NAD-dependent [Anaerococcus vaginalis ATCC 51170]
          Length = 668

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 186/714 (26%), Positives = 333/714 (46%), Gaps = 58/714 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +I++ +  +  L  +I+  +  YY    P + D EYD L      +           +  
Sbjct: 3   NIDKIK--IDELIDKINELNYHYYTLDNPTVSDGEYDKLYDELLNLEKK----TGYVNEF 56

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSI 126
            P  ++GG +     K  H     S +K  N   L+ +I R  +   + +         +
Sbjct: 57  SPTQRVGGAILDKFEKHFHITRLYSQDKSQNYTQLKDWIIRTKKLRDQYNKTHEDKLEEL 116

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            F  E K DG  I + YE G    AA RGDG SGEDV+  +  IPTIP  +      ++E
Sbjct: 117 EFITEYKFDGLTINLTYEDGLLKTAATRGDGISGEDVTKQVLTIPTIPTKIKE--KSLLE 174

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246
           ++GE  +  +     N+E       P  N RNAA+G +R L+ +   +           T
Sbjct: 175 IQGEAVMPLSSLKKYNEE----NEIPLKNARNAAAGAIRNLDTSQTKKRNLKAYFYQIST 230

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           + +  K + E L+ ++    PV    +    F  IV   + +K  R  +    DG+V KV
Sbjct: 231 NNLDFKTEEEKLEFLKEQKLPVYPYKKVIKKFDDIVKEIDFIKEERHHIDVLTDGVVIKV 290

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++   Q+ LG   + PRW I++K+  ++ +T LLD+   +GR+G +TP+A LEPV+  G 
Sbjct: 291 NDVKTQEVLGYTNKFPRWSIAYKYDPEEYTTTLLDVVWNVGRSGKVTPLAILEPVDFSGV 350

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  ATL+N D I             + +++G +V ++R+ +VIP+++ ++      + +
Sbjct: 351 TVQRATLNNYDDI-----------LRKKVKIGSKVFIRRSNDVIPEILGVVDEN-QENTK 398

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP C S +         +      C   ++C+ Q   R+ HF SRDA +IEGL
Sbjct: 399 EIEKPDKCPYCHSEL--------IEGNVHIYCPNSISCTPQLKARMVHFASRDAMDIEGL 450

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            ++ ++ F         I+   D++ L      +      +  F +    NL ++I   +
Sbjct: 451 SEKTIELFINK----LGIKEIYDLYDLSYDDLIN------LESFKEKKTNNLLNAIENSK 500

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +  L  FI ++GI +VG + AR LA+ Y S+    +               LI +  +G+
Sbjct: 501 SCELNHFIHAIGIPNVGIKTARDLAEKYKSFDKLRET----------KQDDLIEIEDIGE 550

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
             A+ IV+F+ +     +++ LL +            S+ ++  K+V TGT++  +R+  
Sbjct: 551 KTAEDIVDFFNDSNIKKSLDILLSKGIKIKAIDTSEKSNSLDGMKIVITGTIENYKRNDI 610

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  + +    V++ +S+ TD+++ G+ PGSK EKA++LGVKI+  ++    L++
Sbjct: 611 KNLIIENNGDVTSSVSKNTDLVLCGEKPGSKKEKAEKLGVKILENQELFEFLKK 664


>gi|315656502|ref|ZP_07909391.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315493061|gb|EFU82663.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 799

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 198/822 (24%), Positives = 340/822 (41%), Gaps = 131/822 (15%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI-----ILDSEYDALKRRC 55
           +KK+  IP      E A  + + L  +I      YY    P      + D+EYDAL  + 
Sbjct: 2   VKKKTSIP------ESALAQHADLVDQIEAARTDYYDQ-TPETGVTRLSDAEYDALFVQL 54

Query: 56  DAIAHAFPDLARSEDPNGPLNKIGG----EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI 111
             +  A+PDL     P+ P   +GG              H     S++ +++  ++  + 
Sbjct: 55  QLLEAAYPDLV---TPDSPTQTVGGSGETANTEGFPPHHHLCQMGSIDDVFSYAEVDAWW 111

Query: 112 TRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP 171
            R+ +     +      + E K+DG  +++ Y  G     A RGDG +GEDV+  ++ I 
Sbjct: 112 ARVEKSL---EGQDFSVSAEVKVDGLAMSLTYLHGTLAVGATRGDGFTGEDVTENVKTIA 168

Query: 172 TIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230
           T+P  LS    PE++E+RGEVY+   DF A+N      G K +ANPRNAA+G L++ +P 
Sbjct: 169 TVPVRLSGENVPELVEIRGEVYLPLADFAAMNATRERDGEKLFANPRNAATGSLKQKDPV 228

Query: 231 DITRYL-NFFVHGLGKTSEIFA------KGQYEMLQKMRCLGFPVNNGV--------RQA 275
              +    F  HG+G+            + Q +  + +   G                  
Sbjct: 229 QAAKRPLAFLAHGVGEVRWADPGAAAHLETQEDFYELLESWGLHSVRETPASLGLSLAGI 288

Query: 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQA 335
           ++   I +  ++M + R    + IDG+V KVD F+ +  LG  AR+PRW  ++KF  ++ 
Sbjct: 289 HSLAEIHTVLDQMTAHRHDFAHQIDGVVLKVDSFAQRDALGSTARAPRWACAYKFPPEEV 348

Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395
            TRLL I++Q+GRTG +TP   +E V + G+ ++ ATLHN   +             +D+
Sbjct: 349 HTRLLGIEVQVGRTGRVTPFGVMERVLVDGSYVSRATLHNAKEVAR-----------KDV 397

Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455
           R GD V++++AG++IP+++  +++ R      +  P  CP C + +         +    
Sbjct: 398 RPGDTVVLRKAGDIIPEILGPVMSLRPAGLPEWVMPDTCPSCGTELG-----AQKEGDID 452

Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF------------- 502
            RC     C AQ  ERL H  SR+A +IEGLG++      + E                 
Sbjct: 453 LRCPNQSGCPAQITERLIHVGSRNALDIEGLGEEGALALTQPEFGRGDVAAALAAGGHCE 512

Query: 503 ------------------------------SIRIPADIFTLQRRQQTSTTKIENILGFGD 532
                                          +   A +F LQ            I G G 
Sbjct: 513 LEDGTIVAVPSGEPRSLEAIEDLLPPPQSPVMTSEAGLFALQPEDLRDVMVWREIPGTGG 572

Query: 533 VSVTNL--------------YDSINKRRNISLERFIFSLGIRHVGAEIARSL-------- 570
                +               ++  +R    +   +       + A  ++ L        
Sbjct: 573 RDWQQVRFFWAKPRPLPKAAQEATGQRFGPPVAGKVVQTFFEQLQAAKSKELWRVLVALS 632

Query: 571 AKYYLSYQN--FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            ++         A++   + A        L     +G++IA +I +++  P +   V+A 
Sbjct: 633 IRHLGPVAARTIARQFVTMSALRVASAEQLGEAEGIGEVIAASIRDWFTVPWHQEIVDAW 692

Query: 629 LKEVSPSIGRHE----------KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
                 ++ + E           N++  +E   +V TG +    R  AQ  V   G   +
Sbjct: 693 EAAGVGAVSKAEGASEASLAGDTNLAPTLEGLTVVITGNIPGYTRESAQLAVEARGGKAT 752

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +S+KTD+++ G   GSKL KAQ LG+ ++    F  LL++
Sbjct: 753 GSVSKKTDLVVAGAGAGSKLSKAQALGIPVIESAGFEALLEK 794


>gi|227485017|ref|ZP_03915333.1| DNA ligase (NAD(+)) [Anaerococcus lactolyticus ATCC 51172]
 gi|227237014|gb|EEI87029.1| DNA ligase (NAD(+)) [Anaerococcus lactolyticus ATCC 51172]
          Length = 667

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 191/709 (26%), Positives = 334/709 (47%), Gaps = 57/709 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            EL  + + I+  D  YY   KP++ D EYD L  +   +             N P N++
Sbjct: 5   DELKKIIERINELDYHYYTLDKPLVSDGEYDKLYNQLIKLQKN----LAYVPENSPTNRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEP 132
           GG++     K  H    LS +K  + ++++++I R  R  +  +        ++ F +E 
Sbjct: 61  GGQILDKFEKHYHLTRLLSQDKAQSYDEIKEWIERCKRLKEAYESTSGERLPNLEFVMEY 120

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K DG  I + YE G    AA RG+G  GE V A    I +IP  +      ++E++GE  
Sbjct: 121 KFDGLTINLTYEDGILKTAATRGNGIVGEQVKAQAETIRSIPFTIKE--KSLLEIQGEAL 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +  ++    N E          N RNAA+G +R L+  +  +           T+ I  K
Sbjct: 179 MPLSELDRYNKE----NETQLKNARNAAAGAIRNLDTKETAKRHLTAYFYAVPTNSINFK 234

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            + EML  ++ +   V+   ++  +   I++    +K  R TL    DG+V K+++   Q
Sbjct: 235 NEEEMLSFLKEMKLNVHPYHKKVTSLDEIINELERIKEERKTLDVLTDGVVIKINDKKTQ 294

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG   + PRW I+ KF  ++ +T+LLD+   +GRTG +TP A LEPV+  G  ++ AT
Sbjct: 295 EVLGVTEKFPRWSIAFKFEPEEFTTKLLDVIWNVGRTGKVTPSAILEPVDFSGVTVSRAT 354

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L+N D I+            + +++G  V ++R+ +VIP+++ ++     P       P+
Sbjct: 355 LNNYDDIER-----------KKVKIGSDVFIRRSNDVIPEILGVVDEN-QPGTIKIEKPT 402

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S ++++             C   ++C+ Q L R++H+ SR+A +IEGL ++ + 
Sbjct: 403 HCPYCHSELIQEK--------VHIVCPNSISCTPQLLARMEHYASRNAMDIEGLSEKTIG 454

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +      SI+   DI+ L   +         +  FG     NL  SI+  +N  L+ 
Sbjct: 455 QLIEE----LSIKEIYDIYDLTYDELIK------LERFGHKKAKNLLASIDNSKNRDLDA 504

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FI+++GI +VG   AR LA  + S+                    LI +  +G+I  + I
Sbjct: 505 FIYAIGIPNVGERTARDLANKFKSFDKLRNAT----------VDELIEIDDIGEITGENI 554

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVT 671
           VEF+ +   + +++ LL +        E    S+ ++    V TGT+    R   ++ + 
Sbjct: 555 VEFFHDKNIVESIDILLSKGINLNNPRENTSDSKKLDGINFVITGTIDGYNRDDIKKMLE 614

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             GA V   +S+ TDI++ G+  GSK +KA +L V+I  +E+    L +
Sbjct: 615 DNGANVRGSVSKNTDIVLAGEKAGSKKDKAIELNVEIYEDEKLYSFLSE 663


>gi|310830411|ref|YP_003965512.1| DNA ligase, NAD-dependent [Paenibacillus polymyxa SC2]
 gi|309249878|gb|ADO59444.1| DNA ligase, NAD-dependent [Paenibacillus polymyxa SC2]
          Length = 662

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 199/716 (27%), Positives = 330/716 (46%), Gaps = 65/716 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +I  A++ +  L  EI  HD+ Y    KP+I D EY+ L      +   +P+      P+
Sbjct: 3   TIFNAQQRIKQLTSEIRKHDELY-DQFKPVISDQEYNNLYYELLDLEKQYPEFVI---PD 58

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P +KI   +   L KV HS    S EK+   +++  F+ R                ++ 
Sbjct: 59  SPTHKIYTVLVDGLEKVRHSSFMGSQEKMKTWDEVVSFMNR----------YEGKVLVQH 108

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  I + Y  G    A  RG+G  G+++   +R I  +P   ++     +E+R E  
Sbjct: 109 KLDGLTIVLTYMDGLLQKAVTRGNGEIGQNIIHTVRTIKNVP--ANIPFKGRLEIRMEGI 166

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFA 251
           I   +F  +N          ++NPRN  SG L +LN +    R +   V  +     +  
Sbjct: 167 IPYAEFERINV------DGAFSNPRNLVSGTLNQLNASIASERNVQGIVFDIVHIEGMTF 220

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL----PYDIDGLVYKVD 307
               E L+ ++  GF     V    T  G+      ++ +        P+ IDGLV K D
Sbjct: 221 NKISEQLRFLKEQGFTTVESVAFEQTVEGLSQMNAYLQEMEENTRKTLPFMIDGLVIKFD 280

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           E S +++LG  ++ PRW  ++KFA  +A+T +L ++  + RTG +TPVA L  V+I    
Sbjct: 281 ELSAKEKLGNTSKHPRWSAAYKFASLEATTTILGVEHSVARTGQITPVALLNTVDIDSVD 340

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++ A+L N   I+            +DIR+GDRV V RA +VIP+V   I   R  + Q 
Sbjct: 341 VSRASLANYGMIEK-----------KDIRIGDRVFVIRANDVIPQVTASIKEMRTGNEQL 389

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P+ CP C S           + V A+    G  CS Q   +++HF SR A NI  LG
Sbjct: 390 IQTPTCCPKCGSPT---------EFVGAYLYCRGEQCSPQLQGKIEHFASRKALNINSLG 440

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
              ++ FFK+      IR   D++ LQ +++       ++ GFG  S T L   + + + 
Sbjct: 441 TSTVELFFKN----GIIRHFLDLYNLQEKEEQIC----SLEGFGKKSFTKLQKELERVKK 492

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L + + +L ++H+G   ++ L+K Y           +           L+ +P  G  
Sbjct: 493 EPLHKVLIALSVKHLGETKSKELSKVYKDIDAIMNASEDAEDFRAA----LLALPDFGSA 548

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRH 664
           I  +IV F+ +      +  +           + N+S     +  + +V TGTL  + R 
Sbjct: 549 ITDSIVAFFTSEEGRSLIRKMQSIGFTMKSEFDTNISQENLPLSGQTVVVTGTLGAMGRD 608

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           +A+E +  LGA VS  +S+KT  ++VG   G SK +KA +LGV+++ E++FL ++ 
Sbjct: 609 EAKEKLEALGAKVSGSISKKTSFVVVG--TGKSKHDKAIELGVRVVYEDEFLQIIA 662


>gi|323359739|ref|YP_004226135.1| NAD-dependent DNA ligase [Microbacterium testaceum StLB037]
 gi|323276110|dbj|BAJ76255.1| NAD-dependent DNA ligase [Microbacterium testaceum StLB037]
          Length = 810

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 214/824 (25%), Positives = 341/824 (41%), Gaps = 134/824 (16%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS++ AR E   L Q I+   + YY     ++ D+ YD    R +A+    P+L   
Sbjct: 7   LPDLSLDDARAEAIDLTQRITDAREAYYGRDAELVDDATYDGWMHRLEALERRHPELQGQ 66

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P   +G      L  + H+   LSL+ +++ ++LR +  +      +       +
Sbjct: 67  ---DSPTLSVGAAEATDLATIEHAERMLSLDNVFSPDELRDWAVKTEAAAGRAVH----W 119

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEV 187
             E KIDG  I++RYE G    AA RGDG  GE V+     +  +PR L     P I+EV
Sbjct: 120 LSELKIDGLAISLRYENGVLTSAATRGDGRVGEIVTENALRLADVPRELGGEGHPPIVEV 179

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYA--------------------------------N 215
           RGEV+I    F  LN        +  A                                N
Sbjct: 180 RGEVFIPVAKFENLNRLQGEYRDRAVAEARERHAGRRAGRPFDEEKAEQAAARRFPAFAN 239

Query: 216 PRNAASGILRRLNPTD----------ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
           PRNAASG LR+                   L+ +VHG+G   +     Q E+   +   G
Sbjct: 240 PRNAASGGLRQQIDKKTGLELEAGLARIESLSLYVHGIGAWPDPPVAAQSEIYDLLASWG 299

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
            P +   R  ++  G++S+       R  + ++IDG+V KVDE +L  +LG  +R+PRW 
Sbjct: 300 LPTSPYSRVESSIDGVLSFVAHYGEHRHDVEHEIDGVVVKVDELALHDELGATSRAPRWA 359

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I++K+  +Q +T+LLDI + +GRTG  TP A +EP  + G+++  ATLHN+D +K     
Sbjct: 360 IAYKYPPEQVNTKLLDIVVSVGRTGRATPFAVMEPAKVAGSVVRQATLHNQDVVK----- 414

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                  + + +GD V++++AG+VIP+V+  +V  R    + F  P+ CP C + +    
Sbjct: 415 ------VKGVLIGDTVVLRKAGDVIPEVLGPVVELRDGTERAFVMPADCPECGTPLR--- 465

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP----- 500
                +     RC    +C AQ   R++H  SR A +IE LG+       + E P     
Sbjct: 466 --PAKEGDIDLRCPNARSCPAQVRGRVEHIGSRGALDIEALGEVTAAALTQPEVPERPPL 523

Query: 501 ----------------------------------------------AFSIRIPADIFTL- 513
                                                               P     L 
Sbjct: 524 DTEAGLFDLTVEQLVPIEVVVRDSETGERKVDPETGELVRRAPFQKLGPASYPPGAENLD 583

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
              ++    + +          T L   + K +   L R + SL IRHVG   AR+LA++
Sbjct: 584 PAERRRRGIRKDYREVLPSEQATKLVAELEKAKTKDLWRLLVSLNIRHVGPVAARALAQW 643

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           + S                     L  V  VG IIA A++++++   +   VE   +   
Sbjct: 644 FGSLDAIRAATR----------EELAAVEGVGGIIADAVIDWFEVDWHREIVETWSRAGV 693

Query: 634 PS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
                              +    +V TG+L    R  AQE +   G   ++ +S+KTD 
Sbjct: 694 RFSIPGHPGPGAAAAAGGVLAGLTVVATGSLDGYTREGAQEAILAAGGKAASSVSKKTDF 753

Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
           +  G   GSKL KA++LG++I++  QF  L++Q    L     D
Sbjct: 754 VAAGPGAGSKLAKAEELGLRILDAAQFRILVEQGPGALDGVGSD 797


>gi|304372912|ref|YP_003856121.1| DNA ligase, NAD-dependent [Mycoplasma hyorhinis HUB-1]
 gi|304309103|gb|ADM21583.1| DNA ligase, NAD-dependent [Mycoplasma hyorhinis HUB-1]
          Length = 673

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 213/707 (30%), Positives = 356/707 (50%), Gaps = 49/707 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN- 72
            +QA+K++  L Q++   +  Y+    PI+ D  YD    +   +   +  L   E+ N 
Sbjct: 12  EKQAKKQIEELRQKLHLWNHHYFDLDIPIVDDLVYDQELNKLKKLEKKYFYLFTLEENNA 71

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +G +++    K+ HS P LSL K +++E+L+KF  +  +      D +  F +EP
Sbjct: 72  SPTQIVGAKVDERFQKIKHSQPMLSLNKAYSLEELKKFAQKAIKI-----DENASFYVEP 126

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  I++ Y++GKF  A  RGDG +GEDVS  I  I       S+N  + IE+RGEV+
Sbjct: 127 KIDGISISLHYKQGKFTQAVTRGDGTTGEDVSHNIENIDAKYVPKSINYFDDIEIRGEVF 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251
           +    F  +N E   + +  + NPRNAA+G LRRL+   +    L  FV+ +        
Sbjct: 187 LDLESFKNMNLEQARLEKPLFLNPRNAAAGQLRRLDSKSNKLANLKVFVYQVVNPELHNL 246

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E +Q ++ LGF  NN  +     H       E++   + L Y+IDG+V KV+EF L
Sbjct: 247 ATVEESIQFLQTLGFNTNNLGQHKANIHQSYQLIQEIQEKENKLNYEIDGVVIKVNEFKL 306

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             +LG  ++ P   I+ KF++K   T+L  I   +GRTG +T  A LEPV + G+ I+ A
Sbjct: 307 YDELGTTSKFPHSAIAFKFSDKVVQTKLKHIFATVGRTGKITYNAVLEPVLLQGSTISAA 366

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN +YIK L            I     V +K+AGE+IP+V+  +      +   F   
Sbjct: 367 TLHNYNYIKDLA-----------INTNSMVYIKKAGEIIPQVIQSVEKFEKTN---FEKI 412

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S +         +      C        Q   ++ HF S++  +I+ LG++++
Sbjct: 413 TNCPECNSDL------IDSETGIDQFCINPNCLGIQL-RKIIHFCSKEGLDIKDLGEKKI 465

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F+        IR   DIF L     T   +I  +  F   S+  L ++I K ++ +L+
Sbjct: 466 ELFWDQN----LIRSIPDIFRLA----TKIEEISKLKSFQQKSILKLINAIEKAKHTTLD 517

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + IF+LGI+H+G + A+ LA+   + +               ++ + +    +G+   ++
Sbjct: 518 KLIFALGIKHIGQKTAKMLAQKVDNLEQL----------KTFNFDTFLEDKDIGEKTVES 567

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +  +++N  N+  +  L++         E+  S+ +EN   V TGTL +  R + +  + 
Sbjct: 568 LKNYFKNEANLQIINELIQ--VNFEIIKEETYSNILENLSFVITGTLSR-SRSQIELIIL 624

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           Q    VS+ +S+ T  +I+G+N GSK +KA+ LGVKI++EE+F  LL
Sbjct: 625 QNKGKVSSSVSKNTSYLILGENGGSKEDKARNLGVKILSEEEFFKLL 671


>gi|225569253|ref|ZP_03778278.1| hypothetical protein CLOHYLEM_05335 [Clostridium hylemonae DSM
           15053]
 gi|225162052|gb|EEG74671.1| hypothetical protein CLOHYLEM_05335 [Clostridium hylemonae DSM
           15053]
          Length = 648

 Score =  418 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 188/705 (26%), Positives = 311/705 (44%), Gaps = 65/705 (9%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L ++++     YYQ ++ I+ + EYD L     ++               P   +G 
Sbjct: 1   MQELVEQLNKAGKAYYQDAEEIMSNYEYDRLYDELVSLEKE----LGITLSGSPTANVGY 56

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           E+   L K  H  P LSL+K  ++E+L+KF                   +  K+DG  I 
Sbjct: 57  EVLSELPKERHDSPMLSLDKTKDVEELKKFA------------GGQKVMMSWKLDGLTIV 104

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y  G    A  RG+G  GE ++   R    IP  L +     + +RGE  I   DF  
Sbjct: 105 LTYRDGTLYKAVTRGNGEVGEVITNNARVFRNIP--LQIAYKGELILRGEAVIGYKDFEK 162

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           +N E+  V    Y NPRN  SG +R+LN      R + F+   L +   +          
Sbjct: 163 INGEIEDVD-ARYKNPRNLCSGSVRQLNNEITAKRNVRFYAFTLVQADGVDFHNSRVCQM 221

Query: 260 -KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             +R  GF V              +   +     +   +  DGLV   D+    + LG  
Sbjct: 222 EWLREQGFEVVEFCEVTKDTLE--AEVIKFSEKIAENDFPSDGLVLVYDDVEYGRSLGRT 279

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           ++ PR   + K+A++   T+LL+I+    RTG++ PVA  EPV + G  ++ A++HN   
Sbjct: 280 SKFPRDSFAFKWADETKETKLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVHNLSI 339

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           ++ L+           + VGD + V +A  +IP++ + +      D      P  CP+C 
Sbjct: 340 MEELE-----------LGVGDEIEVYKANMIIPQIAENLTRSGVKD-----IPLHCPVCG 383

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
                          A         C A+ L+    FVSRDA NIEGL +  L+ F    
Sbjct: 384 GDT-----EVKQVSNAKALYCINPDCQAKHLKSFALFVSRDALNIEGLSEATLEKFIAK- 437

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I+  ADIF L+R Q     +IE + GFG+ S  NL +SI K R  +L + I+ LG
Sbjct: 438 ---GYIKEYADIFHLERFQD----EIEKMEGFGEKSYRNLIESIEKARTTTLPKVIYGLG 490

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I ++G   A+ +   +        + + ++A        L  +  VG +IA A V+++ +
Sbjct: 491 IANIGLANAKMICSEFGC------DTDKMLAAGP---EELSAIQGVGGVIAGAFVDYFSD 541

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVV 677
            R++     LLKE++      E+           V TG+++    R + +E +  LG  V
Sbjct: 542 ERHVRIFRDLLKELTIPAEETEQK-EQRFAGVNFVITGSVEHFANRGEIKELIENLGGKV 600

Query: 678 SAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  ++ KT+ +I  D  +  SK +KA +LG+ I++E+ FL +L +
Sbjct: 601 TGSVTSKTNYLINNDVTSTSSKNKKANELGIPIISEKDFLEMLGE 645


>gi|183219642|ref|YP_001837638.1| DNA ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189909780|ref|YP_001961335.1| DNA ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|190359263|sp|B0SA75|DNLJ_LEPBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781356|sp|B0SKC1|DNLJ_LEPBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|167774456|gb|ABZ92757.1| DNA ligase (NAD+) (contains BRCT domain type II) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778064|gb|ABZ96362.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 671

 Score =  418 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 197/717 (27%), Positives = 342/717 (47%), Gaps = 58/717 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  +K + +L +EI  H+D YY+ + P+I D E+D L +    +    PDLA   D + P
Sbjct: 8   EDPKKRIITLRKEIGRHNDLYYKENAPVITDKEFDILVKELQKLESENPDLA---DVSSP 64

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G +++    K  H +P LSLE  +N  +L +++ +              ++LE KI
Sbjct: 65  TAQVGSDLSPQFSKFKHKVPVLSLENTYNETELSEWLEKT--------GIEENYSLEWKI 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I + YEKGK      RG G  G+ V+  ++ I TIP  LS  +   + VRGE++++
Sbjct: 117 DGASILLYYEKGKLTNCVTRGSGGIGDVVTENVKTISTIPHTLSEEMN--LTVRGEIFMT 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS-EIFAK 252
             DF   N+E        +ANPRN A+G +++ +P     R L  +V+ +  +S      
Sbjct: 175 FADFEEFNEE----YGGKFANPRNLAAGSIKQKDPLDVAKRPLRIYVYDVYFSSSRKGIN 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              ++L  ++   FP+        T   ++      +  +  +P+ +DGLV K+D  +L+
Sbjct: 231 THKDILSLLKKEKFPLAPDT-TILTGKKLLREIESFRKKKDKMPFPVDGLVIKLDSLNLR 289

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LGE + SPRW  + KF      + + +ID  IGRTG +TP A++ P+++ G  +T AT
Sbjct: 290 ESLGETSHSPRWARAFKFDALLKESTIEEIDFAIGRTGKVTPRAKVTPISLAGTTVTYAT 349

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN+DYI  L A            +G +VL+ + GE+IP V  +    +      F  P+
Sbjct: 350 LHNQDYINQLGAG-----------IGAKVLISKRGEIIPAVEKVTFPPKT----IFVLPN 394

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C +++       T    +         C  ++L +L  F S+   NIEGLG++Q+ 
Sbjct: 395 QCPSCNTKL-------TKVDDSVDFFCTNRHCPERKLNQLIFFCSKKQMNIEGLGERQIQ 447

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF+       ++   D++TL++ +      +  + GFG+ SV  ++D+I K +      
Sbjct: 448 IFFEK----GWVKDIPDLYTLEKYKP----TLLELDGFGEKSVKIIFDAIEKSKEKDFRF 499

Query: 553 FIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            + S+G+  VG ++   L +  Y S+        +  A+       L  +  +G    +A
Sbjct: 500 TLPSIGLNEVGPKVTEILIENGYDSWDKLLTLSKSKTAN-----EDLKAIHGIGPRTIEA 554

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKI-QRHKAQEY 669
           ++   ++   +  V  L K          +         +    TG+ +    R  A + 
Sbjct: 555 LLTHLKDKETLKLVATLKKLGLKFQADETEKSDLQPFVGQSWCVTGSFENFQPRDLAMDL 614

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           +T+ G      +S KT  ++ G   GSKL+KA +LGVK++ E +FL LL+Q    + 
Sbjct: 615 ITKHGGKKVTSVSSKTTHLLYGPGAGSKLDKATELGVKLVTESEFLDLLKQEGIAID 671


>gi|110833810|ref|YP_692669.1| NAD-dependent DNA ligase LigA [Alcanivorax borkumensis SK2]
 gi|123345666|sp|Q0VR01|DNLJ_ALCBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110646921|emb|CAL16397.1| DNA ligase (NAD+) [Alcanivorax borkumensis SK2]
          Length = 777

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 215/617 (34%), Positives = 321/617 (52%), Gaps = 45/617 (7%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +  SL  +++     YY    P + D+EYD + R    +   +PDL  +   + P  ++G
Sbjct: 10  QAQSLRDQLNDWSYRYYVQDDPAVPDAEYDRVFRALKDLEAQYPDLVTA---DSPTQRVG 66

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                +  +V H +P LSL+  ++ E+L  F  RI       +   I +  EPK+DG  +
Sbjct: 67  DVPLDAFEQVQHEVPMLSLDNAFDDEELWAFDKRIRERLDVSEI--IDYVAEPKLDGLAV 124

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDF 198
           ++ YE G+ V AA RGDG +GE+++   R I ++P  L  N  P+ +EVRGEV +    F
Sbjct: 125 SLLYENGELVRAATRGDGQTGENITVNARTIRSVPLKLRGNDVPKRLEVRGEVVMPHAGF 184

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK-TSEIFAKGQYE 256
             LN      G K +ANPRNAA+G LR+L+     +R L F+ + + +            
Sbjct: 185 EELNARQQEAGLKLFANPRNAAAGSLRQLDSRITASRPLEFYAYSMAQLEGWEHPPTHSA 244

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ML  +R  G  VN  +R  +    ++ +Y  +   R  L YDIDG+VYKV+ F  Q  LG
Sbjct: 245 MLDALRDWGLRVNPEIRVCHGVEALLRFYQGILEKREHLDYDIDGVVYKVNRFDWQDDLG 304

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +R+PRW I+HKF  ++  T L  +D Q+GRTG LTPVARLEPV++GG +++NATLHN 
Sbjct: 305 FVSRAPRWAIAHKFPAQEELTVLNGVDWQVGRTGALTPVARLEPVHVGGVIVSNATLHNI 364

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+ L           DIR+GD V+V RAG+VIPKVV  +   R  +AQ  + PS CP+
Sbjct: 365 DEIQRL-----------DIRIGDTVVVYRAGDVIPKVVRALPERRPANAQGIALPSSCPV 413

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++R      G      RCTGGL C  Q+ E +KHF SR A +I+GLG + +D    
Sbjct: 414 CGSEILR------GHDQVVARCTGGLICGDQRREAIKHFASRRAMDIDGLGDKLVDALVD 467

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     I   AD++ L+  Q         +   G+ S  NL  ++   + + L RF+F+
Sbjct: 468 QE----LITTVADLYRLKAEQVAG------LERMGEKSADNLIAALEASKTVGLGRFLFA 517

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  +G E A++LA  +    +       ++            VP VG  +A+AI  F+
Sbjct: 518 LGILQIGEETAKNLADCFGDLDSIRHAPLLLLL----------AVPDVGLEVAKAIGAFF 567

Query: 617 QNPRNICAVEALLKEVS 633
               N   ++ LL +  
Sbjct: 568 AESDNEAVIDGLLAQGV 584



 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 75/170 (44%), Gaps = 10/170 (5%)

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            + +  +G +    L  ++ +    +                      V   +   + + 
Sbjct: 613 GMNLEGIGDKSLDILGSHFRTVTELSAAAAEGAGAEPK---------GVRSGVMTQLAKA 663

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
                    ++   K+V+    R  + + S  +E +  V TGTL++  R++A++ + QLG
Sbjct: 664 LAENDWRGRLQDAEKKVADMAARAPQEMESQPLEGQTWVLTGTLEQFTRNQAKQALQQLG 723

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           A V+  +S+ T +++ G + GSKL KA+ LG+++ +E   L LL Q+   
Sbjct: 724 AKVAGSVSKNTRMVVAGASAGSKLAKAESLGIEVCDEAALLSLLNQHGID 773


>gi|289804564|ref|ZP_06535193.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 551

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 214/588 (36%), Positives = 335/588 (56%), Gaps = 43/588 (7%)

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVR 188
            E K+DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVR
Sbjct: 1   CELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVR 60

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-T 246
           GEV++ +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G   
Sbjct: 61  GEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILE 120

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                      L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV
Sbjct: 121 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 180

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 181 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 240

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 241 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 289

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 290 PIVFPTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 343

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +
Sbjct: 344 GDKIIDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAK 393

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +                   L +VP VG 
Sbjct: 394 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGI 443

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           ++A  +  F+    N   +  LL E       +  + + + S    K +V TG+L ++ R
Sbjct: 444 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVLTGSLSQMSR 503

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
             A+  +  LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E
Sbjct: 504 DDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDE 551


>gi|331002925|ref|ZP_08326438.1| DNA ligase [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330413218|gb|EGG92592.1| DNA ligase [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 650

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 183/708 (25%), Positives = 320/708 (45%), Gaps = 62/708 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++ +  L   ++     YY  +  I+ + EYD L     A+             N P 
Sbjct: 2   DKKQRIRELVDILNKAAKSYYVDAVEIMPNIEYDKLYDELLALEKE----TNVVLSNSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +G E+   L K  H  P LSL+K  ++ DL+ +++                    K+D
Sbjct: 58  QNVGYEIAGELPKKAHESPMLSLDKTKSVADLKSWLSDNKALL------------SWKMD 105

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y  G+   A  RG+G  GE ++   +    IP  L +     + +RGE  I  
Sbjct: 106 GLTIVLTYRNGELAEAVTRGNGTIGEVITNNAKNFQNIP--LKIEFKGELILRGEAVIKY 163

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
           +DF  +ND  I      Y NPRN  SG +R+LNP      + +        +E       
Sbjct: 164 SDFKRIND-AIEDADAKYKNPRNLCSGSVRQLNPAITKARMVYCNIFNVVRAEDMDFENS 222

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           +  Q         +    +      I S   E +S         DGLV  +D+ +L ++L
Sbjct: 223 KAKQFEWVKNEGFDVVEYKITDSKNIESDIAEFESKIVDNDIPSDGLVLLLDDIALGERL 282

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  ++ PR  ++ K+++++ +T+L  I+    RTG++ P+A  EPV + G  ++ A+LHN
Sbjct: 283 GSTSKFPRNAMAFKWSDERQNTKLKYIEWSPSRTGLINPIAVFEPVELEGTTVSRASLHN 342

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
               + L            + VGD + V +A  +IP+V +               P  CP
Sbjct: 343 VSIFEDLM-----------LGVGDEISVYKANMIIPQVYENFTKSNTE-----KIPDVCP 386

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C S+     +  +  L+          C  + +++     SRDA NI+GL +  L+ F 
Sbjct: 387 ACGSQTTVKKDNDSKVLL-----CTNPDCQIKHIKQYALMASRDALNIDGLSESTLEKFL 441

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   I+  +D+F L R +     +I N+ GFG  S   L  +I++ R+ ++ RF++
Sbjct: 442 SK----GFIKSDSDLFNLSRYKD----EIINMEGFGKRSYEKLIAAIDEARHTNMARFLY 493

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           SLGI  +G+  A+ +A+Y+ +         ++    N     L+ +  +G+++A +IVEF
Sbjct: 494 SLGITGIGSANAKMIARYFDN---------DLDRIINASKDDLLEIEGIGEVLANSIVEF 544

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLG 674
           + N +NI  +++L + +       E         K  V TGT++    R++ +E + + G
Sbjct: 545 FGNEKNIENIKSLRELLIFETEESE--TKDIFAGKVFVITGTVEHFSNRNELKEIIEKNG 602

Query: 675 AVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             VS  +S KT+ +I  D  +  SK +KA++LGV+I++EE FL LL++
Sbjct: 603 GKVSGSVSSKTNFLINNDTTSNSSKNKKAKELGVEIISEEDFLKLLEE 650


>gi|90424785|ref|YP_533155.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB18]
 gi|123275077|sp|Q211V0|DNLJ_RHOPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|90106799|gb|ABD88836.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB18]
          Length = 795

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 253/637 (39%), Positives = 361/637 (56%), Gaps = 47/637 (7%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           K     ++ LS  +A+ EL  L  EI  H++ YYQ   P I D+EYDAL+ R +AI   F
Sbjct: 6   KTAPTDLDTLSKAKAKVELKRLSLEIERHNNAYYQDDAPKISDAEYDALRHRVEAIEAKF 65

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P+L      + P  K+G        KV H++P LSL   ++ +++ +F+TR+ RF +   
Sbjct: 66  PELV---SSDSPTQKVGAAPARGFAKVQHAVPMLSLGNAFSDDEVAEFLTRVRRFLKLDA 122

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNI 181
           +       EPKIDG  +++RYE GK V AA RGDG +GEDV+A +R I  IP        
Sbjct: 123 EQIPAIVAEPKIDGLSLSLRYEHGKLVRAATRGDGFTGEDVTANVRTIKDIPHALAVAEP 182

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240
           P   E+RGEVY+ K+DFLALN      G  P+ANPRN+A+G LR+ +     +R L FF 
Sbjct: 183 PAACELRGEVYMLKSDFLALNQRQETAGEPPFANPRNSAAGSLRQKDVAITASRPLKFFA 242

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           +  G+ S++    QY ML  ++  GF VN  +    +    +++Y ++   R+TLPYDID
Sbjct: 243 YAWGEFSDLPEATQYGMLGWLKRAGFTVNPLITLCKSVDDALAFYRKIGEERATLPYDID 302

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+VYKVD    Q++LG   R+PRW I+HKFA +QA+T L  I+IQ+GRTG LTPVARL P
Sbjct: 303 GVVYKVDRLDWQERLGFAGRAPRWAIAHKFAAEQATTILNGIEIQVGRTGALTPVARLAP 362

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V +GG ++ NATLHNEDYIK L           DI +GD V+V+RAG+VIP++V ++ ++
Sbjct: 363 VTVGGVVVQNATLHNEDYIKSL-----------DIHIGDTVVVQRAGDVIPQIVSVVRDK 411

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  DA+P+ FP FCP C S  VRD +       A  RCTGGL C AQ +ERL+HFVSR A
Sbjct: 412 RPEDAEPYEFPKFCPACGSHAVRDEDEGE----AVRRCTGGLICPAQAIERLRHFVSRGA 467

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ----------------------RRQQ 518
           F+I G G+  ++  ++       +R PADIF L                        +  
Sbjct: 468 FDIAGFGETYVELLYEE----GLVRNPADIFALHSKVDELKAALFRKRESLATQREEKTG 523

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578
                  +        V NL  +I+ RR ++  RFIF LGIRHVG   +++L +++   +
Sbjct: 524 KKRKSSLSEEKRQYTDVENLLAAIDARRTVAFNRFIFGLGIRHVGEVTSKALVRHFADVK 583

Query: 579 NFAQEIN-NIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            F   ++   +A     WL L  V  +G+I  + ++E
Sbjct: 584 AFLDGVDAAALARPGPAWLDLKNVRYIGEITLERLLE 620



 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 78/149 (52%), Gaps = 2/149 (1%)

Query: 570 LAKYYLSYQNFAQEINNI-IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
           L  +Y + +  A  +           +  L     +G++  Q++++F++   N   V AL
Sbjct: 644 LLSHYGNEEKIAGALQAARSEAPGPAFQQLANDSEIGEVATQSLIDFFEETNNRQVVTAL 703

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           + +V         +  S I  K +VFTG L++  R +A+    +LGA V++ +S KTD++
Sbjct: 704 MDQVQVERPA-AASAKSPISGKIVVFTGALERTTRDEAKAIAERLGAKVASSVSSKTDLV 762

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           + G + GSKL  AQ+ GVK++ EE++  +
Sbjct: 763 VAGPSAGSKLRDAQKFGVKVLTEEEWAEI 791


>gi|239624075|ref|ZP_04667106.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522106|gb|EEQ61972.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 650

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 193/710 (27%), Positives = 317/710 (44%), Gaps = 65/710 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   + +  L   +      YYQ S+ I+ + EYD L     ++               
Sbjct: 1   MEDRIQRMKELVSTLRQAGKAYYQESREIMSNFEYDRLYDELCSLEKE----TGIIMSGS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E+   L K TH  P LSL+K  ++EDL+ ++                     K
Sbjct: 57  PTQRVGYEVLSELPKETHESPMLSLDKTKSVEDLQSWLGDQKGLL------------SWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + YE G+   A  RG+G  GE ++   R    +P  L+++    + +RGE  I
Sbjct: 105 MDGLTIVLTYEGGRLTKAVTRGNGEIGEVITPNARVFANVP--LNISYEGQLILRGEAVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFA- 251
           + +DF  +N+E+  V    Y NPRN  SG +R+LN      R ++F    L +   +   
Sbjct: 163 TYSDFKRINEEIEDV-DAKYKNPRNLCSGSVRQLNSQITAERNVHFEAFALVRADGVDFG 221

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             +    + +R  GF V +          +    N             DGLV   D+ + 
Sbjct: 222 NSRKRQFEWLREQGFEVVHYEEVTA--ENLPEAVNGFAEAVEGNDVPSDGLVLTFDDIAY 279

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            + LG  A+ PR  I+ K+ ++   TRL  I+    RTG++ PVA  +PV + G  ++ A
Sbjct: 280 GEALGRTAKFPRNSIAFKWQDEIRETRLDYIEWSASRTGLINPVAVFDPVELEGTTVSRA 339

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           ++HN   ++ L           D+  GD + V +A  +IP++ D +      D      P
Sbjct: 340 SVHNLSIMEAL-----------DLGQGDTITVYKANMIIPQIADNLTRSGVRD-----IP 383

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C          K    V +  CT    C A++++    FVSRDA NI+GL +  L
Sbjct: 384 KECPVCGGETQI----KQMNDVKSLYCTNP-DCQAKKIKSFTLFVSRDALNIDGLSEATL 438

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F      A  I   ADIF L+  +      I  + GFG  S  NL  SI    N +L 
Sbjct: 439 EKFI----GAGFIHEYADIFHLEEHKD----AIVEMEGFGQKSYDNLIASIKTASNTTLP 490

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++ LGI  +G   A+ L + + S         +     +     L+ V  +G ++AQA
Sbjct: 491 RMVYGLGIAGIGLANAKMLCREFKS---------DFEKMRHAQADELVAVDGIGGVLAQA 541

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670
            ++++ + +N  AV+ LLKE++       + + +  E    V TG+++    R + QE +
Sbjct: 542 WMDYFASEKNNLAVDHLLKELTIE-AEQVETMDAIFEGMTFVITGSVEHFANRKELQEVI 600

Query: 671 TQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLL 718
              G   +  ++ KT  +I  D     SK +KA+ LGV I++EE+FL +L
Sbjct: 601 ESRGGKATGSVTAKTTYLINNDVASNSSKNKKAKDLGVPIISEEEFLRML 650


>gi|154498647|ref|ZP_02037025.1| hypothetical protein BACCAP_02637 [Bacteroides capillosus ATCC
           29799]
 gi|150272386|gb|EDM99580.1| hypothetical protein BACCAP_02637 [Bacteroides capillosus ATCC
           29799]
          Length = 656

 Score =  416 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 184/709 (25%), Positives = 313/709 (44%), Gaps = 61/709 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L Q I   D+ YY+Y  PI+ D +YD L     A+         +   + P  ++
Sbjct: 5   ERMRELIQTIKEADEAYYKYDAPIMADLDYDRLYDELAALERE----TGTILSSSPTQRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
            GE+  SL  V HS P LS +K  ++ D       I+++    +       L  K+DG  
Sbjct: 61  SGEVLESLTAVRHSRPMLSADKCKSVAD-------IHKYLGGHEA-----VLSWKLDGLT 108

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + +RYE GK V A  RGDG  GEDV+  +R +  +P  L +   E +EVRGE  IS  +F
Sbjct: 109 LVLRYENGKLVQAITRGDGLQGEDVTHTVRIMKNVP--LVIPCKEPLEVRGEGVISWKEF 166

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
                 +     +PYA+PRN A+G +R+LN  ++      F+     +  +    ++E L
Sbjct: 167 ----HALNGTLDEPYAHPRNLAAGSVRKLNAEEVRERGLSFMAFDLISDNLGGSTKWETL 222

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  +GF        A                     Y  DGL+++ ++ +  + LG  
Sbjct: 223 RFLAQMGFTTVGYSILAAGASEEAVRQAMDFYQPKEYAYPTDGLIFEFNDLAYGRSLGAT 282

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
                 M + K+ + +  T+   +++   RTG+++  A  + V I G  + +A LHN D 
Sbjct: 283 GHHENRMTAFKWPDTRYETKFRRLEVATTRTGMISLTAAFDDVVIDGTTVNHAYLHNLDN 342

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
              L            +  GD + V +A  +IP++ +         +     P  CP C 
Sbjct: 343 FTRLA-----------LGPGDTISVYKANMIIPQIAENKT-----KSGGCPLPDVCPCCG 386

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S +V   +    + +         AC A+ + +  HF S+    I+GL +Q L  F +  
Sbjct: 387 STLVVRQSSGGTRQL----YCENEACPARLVRKFVHFCSKTRMEIKGLDEQTLTTFVQH- 441

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                ++   D++ L+R ++    +I    GFG+ S   L +++++RR  +L +FI +LG
Sbjct: 442 ---GWVKNYGDLYELERHKE----EILKTPGFGEKSFARLQNAVDERRTCTLNQFIAALG 494

Query: 559 IRHVGAEIARSLAKYYL-SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           I  VG    R L + +  S+  F + I         D     ++   G ++   I  +Y 
Sbjct: 495 IPEVGRHAGRILNRKFGGSWDAFERAIL--------DQFDFTQLEDFGQVMNDNIYCWYS 546

Query: 618 NPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +          L  ++         +  ++    K +V TG L+   R   Q  +  LGA
Sbjct: 547 DEEEAKLWRPALNHITFLKEETTMPEAQNNPFAGKTVVATGKLENYTRDGIQMKLLSLGA 606

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             ++ +S+KTD +IVG+N GSKL KAQ LGV  + E+QFL +L      
Sbjct: 607 RPASSVSKKTDYLIVGENAGSKLTKAQTLGVTTLTEQQFLQMLADAGIE 655


>gi|317121135|ref|YP_004101138.1| DNA ligase, NAD-dependent [Thermaerobacter marianensis DSM 12885]
 gi|315591115|gb|ADU50411.1| DNA ligase, NAD-dependent [Thermaerobacter marianensis DSM 12885]
          Length = 764

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 215/622 (34%), Positives = 333/622 (53%), Gaps = 52/622 (8%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86
           +I +HD  YY   +P I D+ YDAL R    +   FP++     P+ P  ++GG+     
Sbjct: 34  QIRHHDYLYYVLDRPEIDDAAYDALMRELRELEARFPEIV---TPDSPTQRVGGKPAAPF 90

Query: 87  FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146
            +V H+ P LSL+  ++ E+L  F  R+ R         + +  E KIDG  I + YE+G
Sbjct: 91  ARVEHAEPMLSLDNAFSREELEAFDQRVRRAVG----GDVAYVAELKIDGLSIALTYEEG 146

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYISKNDFLALND 203
           +FV  A RGDG +GEDV+A +R I ++P  L      +P+ +EVRGEVY++ + F  LN 
Sbjct: 147 RFVRGATRGDGEAGEDVTANLRTIRSLPLRLRDRERQVPQRVEVRGEVYMTFDAFRRLNQ 206

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRY----LNFFVHGLGKTSEIFAKGQYEMLQ 259
           E  A G+ P+ANPRNAA+G +R+L+P            + + G         + Q+E+LQ
Sbjct: 207 EQEARGQAPFANPRNAAAGSVRQLDPAVTAARSLNLWVYALAGWEGDPAAAPRSQWEVLQ 266

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +R  G PVN   R+  +   +++Y +E  + R  LPY IDG+V KVD+ + Q++LG  A
Sbjct: 267 TLRQWGLPVNPHARRCTSLDELLAYIDEWAARRHQLPYLIDGIVIKVDDLAQQRELGTTA 326

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           RSPRW I++KF  ++A TR+ DI + +GRTG LTPVA L+PV + G  ++ A+LHN DYI
Sbjct: 327 RSPRWAIAYKFPAEKARTRVRDILVSVGRTGALTPVAVLDPVLLAGTTVSRASLHNADYI 386

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           +            +D+R+GD V+V +AGE+IP+VV+++   R  D +PF+ P  CP C S
Sbjct: 387 R-----------EKDVRIGDLVVVHKAGEIIPEVVEVVKEARTGDERPFTMPERCPACGS 435

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            VVR          AA RC      + Q  ER++HF SRDA +IEGLG   ++       
Sbjct: 436 PVVRVEGE------AATRCPNAACPAQQL-ERIRHFASRDAMDIEGLGPAVIEQLVAR-- 486

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               +R  AD++ L+         +  +   G  S  NL  +I+  R   L R ++ LGI
Sbjct: 487 --GLVRDVADLYRLEAE------PVAQLERMGPKSAANLIAAIDASRARPLRRLLYGLGI 538

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           R VG  +A  LA+++ +     +           +   L+ VP +G  IA+++  F+++ 
Sbjct: 539 RFVGERVAGVLARHFGTIHRVMEA----------EPAELMAVPEIGPRIAESVAAFFRDE 588

Query: 620 RNICAVEALLKEVSPSIGRHEK 641
            N   +  L +    +     +
Sbjct: 589 HNRDLIRRLAEAGVRAAAGEPE 610



 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 47/75 (62%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K  VFTG L  + R +A+  V  LG   +  +SRKTD ++ G+  GSKL KA++LG+
Sbjct: 688 VAGKTFVFTGGLASMTRDEAEALVEALGGRATGSVSRKTDYVVAGEGAGSKLAKARELGI 747

Query: 707 KIMNEEQFLFLLQQY 721
            +++E+ FL L+ + 
Sbjct: 748 PVLDEQAFLRLVGRQ 762


>gi|154484656|ref|ZP_02027104.1| hypothetical protein EUBVEN_02373 [Eubacterium ventriosum ATCC
           27560]
 gi|149734504|gb|EDM50421.1| hypothetical protein EUBVEN_02373 [Eubacterium ventriosum ATCC
           27560]
          Length = 655

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 190/705 (26%), Positives = 304/705 (43%), Gaps = 63/705 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
              + +  L + ++  +  YYQ +  I+ + EYD L      +             N P 
Sbjct: 2   DKSERIKDLVELLNKANKAYYQEANEIMTNFEYDKLYDELVGLEKE----TGMVLSNSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +G ++   L K  H+ P LSL+K   +  L  F                   L  K+D
Sbjct: 58  VNVGYQVVSQLPKEQHNSPMLSLDKTKEVGALADFA------------GDRKCLLSWKMD 105

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + YE G+ V A  RG+G  GE ++   +    IP    +     + +RGE  I  
Sbjct: 106 GLTVVLTYENGELVKAVTRGNGLVGEVITNNAKTFKNIPIS--IPYKGRLTLRGEAIIKY 163

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQ 254
           +DF  +N E+       Y NPRN  SG +R+LN      R +NF    L    ++     
Sbjct: 164 SDFEQINREIEDAD-SKYKNPRNLCSGSVRQLNSQVTAERNVNFVAFALINADDVDFDNS 222

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E   K            R       +            T  Y  DGLV   D+      
Sbjct: 223 IEQQYKWMESQGFQVVEYRVVTRNS-MEDAVKYFAGKIQTYDYPSDGLVLMFDDIEYGLS 281

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+ PR  I+ K+ ++QA T L  I+    RTG++ PVA  EPV + G  ++ A++H
Sbjct: 282 LGTTAKFPRNGIAFKWEDEQAETTLKYIEWSPSRTGLINPVAVFEPVELEGTTVSRASVH 341

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   ++ L+           +  GDR+ V +A  +IP++ + +      D      P  C
Sbjct: 342 NISIMEELE-----------LGSGDRIKVYKANMIIPQISENLTKSGIDD-----LPKEC 385

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C             +            C A+ ++    FVSR+  NI+GL ++ L+ F
Sbjct: 386 PVCGHAT-----EVKAENGIKTLYCPNSQCPAKHVKLFTLFVSRNGMNIDGLSEETLEKF 440

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                 A  I+  ADIF L R       +I    GFG  S  NL DS+ K RN+ L   I
Sbjct: 441 ID----AGYIKEFADIFHLDRY----YEEIVATPGFGQKSYDNLMDSVEKARNVELSALI 492

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           +SLGI ++G+  A+ + K + +         NI    N     LI +  +G+I+A+   +
Sbjct: 493 YSLGIPNIGSANAKLICKAFNN---------NIEKIRNASVEELIEIDGIGEIMAEKFCQ 543

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQL 673
           ++ +  NI  ++ LLKEV+      E      ++    V TG+++    R++ + Y+ + 
Sbjct: 544 YFADEDNIKKLDNLLKEVNI-AEPEENTTPQNMDGLTFVITGSVEHFANRNELKSYIEKH 602

Query: 674 GAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716
           G  V+  +S KT+ +I  D  +  SK +KA+QLGV+I+ EE FL 
Sbjct: 603 GGKVTGSVSAKTNYLINNDAMSASSKNKKAKQLGVEIVTEEVFLE 647


>gi|322652148|gb|EFY48510.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
          Length = 571

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 211/606 (34%), Positives = 333/606 (54%), Gaps = 45/606 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H IP LSL+ +++ E    F  R+      K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEIPMLSLDNVFDEESFLAFNKRVQDRL--KSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                  L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+  +
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++N
Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  F
Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + 
Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +  + 
Sbjct: 459 IDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKATTF 508

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+++LGIR VG   A  LA Y+ + +                   L +VP VG ++A 
Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVAT 558

Query: 611 AIVEFY 616
            +  F 
Sbjct: 559 HVFNFL 564


>gi|225389801|ref|ZP_03759525.1| hypothetical protein CLOSTASPAR_03549 [Clostridium asparagiforme
           DSM 15981]
 gi|225044136|gb|EEG54382.1| hypothetical protein CLOSTASPAR_03549 [Clostridium asparagiforme
           DSM 15981]
          Length = 673

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 168/717 (23%), Positives = 293/717 (40%), Gaps = 59/717 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E  RK+   L   ++ +   YY  + P I D+ YD L      +          +  
Sbjct: 1   MNQELIRKQ-QDLTARLNRYRHEYYNLNAPSISDAVYDRLFEELQDLERQ----TGIQMA 55

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P + +G      L K  H IP LSL+K  NI ++ +F+                    
Sbjct: 56  NSPTSTVGYPAISKLEKTNHPIPLLSLDKEKNIVEVCRFM------------GEHQVMFM 103

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  I + YE G+ + AA RGDG  GE V+   RAI  IP    +   + + + GE 
Sbjct: 104 LKLDGLTIKLTYEGGELLEAATRGDGEVGEIVTHNTRAIGGIP--AHIRYEDRLVITGEA 161

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF 250
           +I  +DF  L   ++    + Y N RN A+G +R L+          F    + +  E  
Sbjct: 162 FIRPSDFEQLKASLVDNNGETYKNGRNLAAGSVRLLDAKTCMERRLMFMPFTVLEGFENL 221

Query: 251 AKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            +    + +       P      ++  T         +++         IDG+V   ++ 
Sbjct: 222 PRKSERLKELSALGFTPCKYLVTKRTLTQAEAEDGIKQLQQYARDKDIPIDGIVVTYNDV 281

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +  K  G      +  ++ KF +    T+L  I+   GRTG + PVA   PV I G  ++
Sbjct: 282 AFAKSCGRTGHHYKDGLAFKFEDDLFETKLQMIEWTPGRTGEIAPVAVFAPVEIDGCEVS 341

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN  +I+ L+           +  G+R+LV +   +IP V D    +R       +
Sbjct: 342 RASLHNLSFIEDLE-----------LMPGNRILVSKRNLIIPHVEDN--LDRGGFVLESA 388

Query: 430 FPSFCPICQSRVVRDL----NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +P  CP C            N    +            C  ++L++  HFV + A NIEG
Sbjct: 389 YPHRCPCCGEPTRIHETRGRNENGEERTIKTLFCDNAGCETRKLKQFVHFVGKKAMNIEG 448

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           L +  L+           I    DI+ L + +     ++  + GFG+ S   L+ +I + 
Sbjct: 449 LSEATLEKLIGR----GWIHSYLDIYRLDQHKD----ELVRMDGFGERSWQRLWSAIQQS 500

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           RN + ER++ ++ I  +G   +  L + +  +   F   +               ++P  
Sbjct: 501 RNTTFERYVIAMDIPMIGNTASGVLCQVFHGNLDEFRDAVYAGY--------DFRQLPDF 552

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQK 660
           GD +   I E++    N C  E L   +                +    K +V TG ++ 
Sbjct: 553 GDTLHNNIHEWFSKEENFCIWEELQMMMKIQKPVQPVAENNTQDNPFAGKTIVVTGKVEP 612

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             R +    +  LGA+  + ++RKT  ++ G+  GSKL KA++LG+ ++  ++F  +
Sbjct: 613 YTRDEMNSLIASLGAIAGSSVTRKTHYLVCGEKAGSKLSKARELGIPVLEPQEFFRM 669


>gi|268610246|ref|ZP_06143973.1| DNA ligase, NAD-dependent [Ruminococcus flavefaciens FD-1]
          Length = 685

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 176/717 (24%), Positives = 311/717 (43%), Gaps = 66/717 (9%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  P + +++++    +  L + ++   D YY     I+ D EYD L    + +      
Sbjct: 28  KATPPKEVNMDKI-NRMKELNELLAKAADSYYNTGVEIMSDHEYDELYDELEKLEKE--- 83

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
                       ++G E+  SL KV H+   LSL+K  +I++L +++     F       
Sbjct: 84  -TGVILNGSRTQQVGFEVASSLTKVKHTSRMLSLDKTKSIDELTEWLGGHEGFL------ 136

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                   K+DG  + + ++ G    A  RG+G +GED++   R I  IP    +     
Sbjct: 137 ------SWKLDGLTLVLTFDNGTLTQAVTRGNGETGEDITMNARHIIGIP--AKIPFEGH 188

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           + VRGE  +   DF  +N          Y NPRN   G +R L+      R +NFF   L
Sbjct: 189 LVVRGESLMKYKDFERVNSL--IEDGSKYKNPRNLCVGTVRNLDSKVTAERNINFFAFNL 246

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                  +    E +Q +  LGF    GV+  ++         E +       +  DGLV
Sbjct: 247 VSADGYESNSFAERIQWLNSLGFQTVYGVKVDSSVLAEKVA--EFEKDIVNNEFPSDGLV 304

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
             +D+ +  + LGE + +PR  ++ K+ ++ A T L +I+    RTG+L PVA  +PV +
Sbjct: 305 LMLDDVAYGRSLGETSHAPRNGMAFKWRDETADTTLREIEWSASRTGLLNPVAIFDPVEL 364

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ A++HN   +K L            + +GD + + +A  +IP+V++        
Sbjct: 365 EGTTVSRASVHNVSIVKQL-----------KLGIGDTLSIYKANMIIPQVLENKTGSASA 413

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
                + P  CPIC  +       KT              C A+ + R +HFV RDA NI
Sbjct: 414 -----AIPEVCPICGEKTEI----KTSDDDVETLFCTNKECPAKHIGRFEHFVQRDAMNI 464

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            GL    ++ F         ++  +D + L R ++    KI  + GFG+ S   + +++ 
Sbjct: 465 VGLSTATIETFVSE----GFVKKYSDFYHLDRFRE----KIVTMEGFGERSYQKMQEAVE 516

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             R+  + R ++++GI ++G   +R +   Y       +               L  +  
Sbjct: 517 ASRHTEMSRILYAVGIPNIGRAASRLICAEYPDVNAIEKLT----------AEELTAIDG 566

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ- 662
           +G+++A   V+F+ N  N+     LL E+         +  S I  K  V TG++   + 
Sbjct: 567 IGEVLANDYVKFFANEDNLTEYHELLTELDI-AEPEAVSEDSPIAGKTFVITGSVNIWKN 625

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFL 717
           R++ + Y+  +G  VS  +S KT  +I  D  +  +K + A+ L V I+ EE+F  L
Sbjct: 626 RNELKAYIESMGGKVSGSVSSKTSYLINNDSQSNSTKNKTAKSLNVPIITEEEFREL 682


>gi|160935782|ref|ZP_02083157.1| hypothetical protein CLOBOL_00672 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441526|gb|EDP19236.1| hypothetical protein CLOBOL_00672 [Clostridium bolteae ATCC
           BAA-613]
          Length = 651

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 186/710 (26%), Positives = 306/710 (43%), Gaps = 64/710 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   + +  L   +      YYQ S+ I+ + EYD L     ++               
Sbjct: 1   MEDRIQRMKELVSILREAGKAYYQESREIMSNFEYDKLYDELVSLEKE----TGVTLSGS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G E+   L K TH  P LSL+K  ++EDL++++                     K
Sbjct: 57  PSQQVGYEILSELPKETHGSPMLSLDKTKSVEDLQEWLGDQKGLL------------SWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + YE+G    A  RG+G  GE ++   R    IP  L+++    + +RGE  I
Sbjct: 105 MDGLTIVLTYEEGTLAKAVTRGNGEIGEVITPNARVFANIP--LNISYQGQLILRGEAVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAK 252
           + +DF  +N  +  V    Y NPRN  SG +R+LN      R ++F    L K   +   
Sbjct: 163 TYSDFERINSGIEDVD-AKYKNPRNLCSGSVRQLNSQITAERNVHFEAFALVKADGVDFH 221

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              +   +    G        +      + +                DGLV   D+ +  
Sbjct: 222 NSRKAQFEWLK-GQGFEVVHYEEVDAASLPASVEGFAKAVEGNDIPSDGLVLTYDDIAYG 280

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  A+ PR  I+ K+ ++   T L  I+    RTG++ PVA  EPV + G  ++ A+
Sbjct: 281 ESLGRTAKFPRNSIAFKWKDEIRETALSYIEWSASRTGLINPVAVFEPVELEGTTVSRAS 340

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           +HN   ++GL+           + VGD + V +A  +IP++ + +      D      P 
Sbjct: 341 VHNLSIMEGLE-----------LGVGDTITVYKANMIIPQIEENLTRSGVKD-----IPE 384

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C  R                       C A++++    FVSRDA NI+GL +  L+
Sbjct: 385 ECPVCGGRT-----EIRKVNDVKSLYCTNPDCQAKKIKSFTLFVSRDALNIDGLSEATLE 439

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F +    A  I   ADIF L+  +      I  + G G  S  NL  SI    N +L R
Sbjct: 440 KFIQ----AGFIHEYADIFHLEEHRD----AIVEMEGLGQKSYDNLIASIKTASNTTLPR 491

Query: 553 FIFSLGIRHVGAEIARSLAKYYL-SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            ++ LGI  +G   A+ L + +   +                    L+ V  +G ++AQA
Sbjct: 492 MVYGLGIAGIGLANAKMLCREFKYDFDKMRHAGE----------EELVAVDGIGGVLAQA 541

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670
            ++++   RN   V+ LL E++    + E    +  E    V TG+++    R + QE +
Sbjct: 542 WMDYFALGRNNQMVDRLLAELNIEKEQPETAGEAVFEGMNFVITGSVEHFANRKELQELI 601

Query: 671 TQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLL 718
              G  V+  ++ KT  +I  D     SK +KA++LGV I++EE+FL +L
Sbjct: 602 ESKGGKVTGSVTAKTAYLINNDAASNSSKNKKAKELGVPIISEEEFLRML 651


>gi|254442845|ref|ZP_05056321.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235]
 gi|198257153|gb|EDY81461.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235]
          Length = 718

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 226/716 (31%), Positives = 351/716 (49%), Gaps = 45/716 (6%)

Query: 8   PIEALSIEQA-RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
               LS E+  R  L  L  EI+ HDD YY+ + P I D++YDALKR    +   +PDL 
Sbjct: 41  DTSKLSEEERGRGRLVELRAEIARHDDLYYRKAAPEISDADYDALKRELHRLEELYPDLQ 100

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
                   +++IG + +    +  H  P LSLEK +  E L  F  R+     +     +
Sbjct: 101 DGLL---IVDEIGDDRSGVRGEFRHFAPMLSLEKAYTEEALLSFYDRV---LSQLTFEEL 154

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEII 185
              +EPK+DG  I++ YE+G+FV A  RG+G  GEDVS  +  I  +PR   + + PE +
Sbjct: 155 DCLVEPKVDGMAISVLYERGEFVRAVSRGNGRVGEDVSENVLRIEGLPRRLETESPPERV 214

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP---TDITRYLNFFVHG 242
           E+RGEVY+S   F  LN+  +A G +P+A+PR+ A+G L+  +P   ++ +  + FF +G
Sbjct: 215 ELRGEVYVSFEGFRRLNEARVAAGEEPFAHPRSLAAGSLKLDDPEVVSERSLSIVFFGYG 274

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
             +  E   + Q       +  G PV   +R+      +++   EM+  R   P+ +DG 
Sbjct: 275 AFEPVEEAPETQSGFYGLAQSWGIPVLEELRKTRGTEALLAAVREMEERRVLYPFPMDGA 334

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V K+D   +Q++LG    +PRW +++KFAEK+  TRLL I IQ+GRTG+LTPVA LE + 
Sbjct: 335 VVKIDRADVQRELGLGTSAPRWAMAYKFAEKRVETRLLGIRIQVGRTGLLTPVAELEEIR 394

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG+ I  A+LHN   I+ +           D+R+GD V ++RAGEVIP VV + + +R 
Sbjct: 395 LGGSSIRRASLHNGGVIERM-----------DLRIGDVVYLERAGEVIPNVVGVNLAKRK 443

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             +  + FP  CP C      D            R      C AQ   +++HF S  A  
Sbjct: 444 SSSTKYVFPDLCPSCGYAAELDEGR-------VERYCRSSTCPAQAQRKIEHFASSRAVG 496

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEG+G  ++         A  +   AD++ L+                 +     L   I
Sbjct: 497 IEGIGPAKIADLMD----AGLVETVADLYLLEVPDLVQAGVG------SEAVARKLVSEI 546

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           +  R  SL R +F LGI  VG   ++ LA  Y     FA+      +             
Sbjct: 547 SGSRAASLWRVLFGLGIPEVGVSRSKKLAAAYGDLAAFARASALDFSPGGRAAEV----- 601

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
             G +  +A++ +     N   +  L+ E+         +  SE+     VFTG L+ + 
Sbjct: 602 GFGPVAREAVLAYLSLDENRELIGRLV-ELGLGARSEVMDTRSEVAGTIFVFTGALEGLS 660

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A   V   GA   + +S   D ++VG  PG+KL+KA++LGV+++  E+F  LL
Sbjct: 661 RKEAMALVEAAGAETRSAVSSACDFLVVGKEPGAKLQKARELGVEVIGLEKFRRLL 716


>gi|254292786|ref|YP_003058809.1| DNA ligase, NAD-dependent [Hirschia baltica ATCC 49814]
 gi|254041317|gb|ACT58112.1| DNA ligase, NAD-dependent [Hirschia baltica ATCC 49814]
          Length = 792

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 247/611 (40%), Positives = 364/611 (59%), Gaps = 23/611 (3%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             +L+++QAR+    L + I   D  YY++  P + D++YDAL++   A+   FP L   
Sbjct: 13  PASLTLDQARERWEELAETIRQADSAYYEHDAPHLSDADYDALRQDLLALESEFPQLVAQ 72

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P   +G + +    K+TH  P LSL+  ++ ED+ +F+ RI R+        +  
Sbjct: 73  ---DSPSQSVGVKPSGRFAKITHLQPMLSLDNAFSDEDVSEFLGRIRRYLGMDASVELHV 129

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEV 187
           T EPKIDG   ++ YE G  +  A RGDG  GEDV+A ++ I  IP  L   + PE IE+
Sbjct: 130 TAEPKIDGLSASLLYENGVLISGATRGDGRVGEDVTANLKTIADIPHTLEGDDWPERIEI 189

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGEVY+S  DF ALN+   A GRK +ANPRNAA+G LR+L+     +R L FF +  G T
Sbjct: 190 RGEVYMSHADFAALNEREAAAGRKTFANPRNAAAGSLRQLDVEVTKSRPLRFFAYAWGDT 249

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           S+ F+  Q   ++     GF +N  ++ A++   ++  YN++ + R++L YDIDG+VYKV
Sbjct: 250 SKEFSVNQMGAVEAFSKWGFSINPLMKCADSASQLIEIYNQIANDRASLGYDIDGVVYKV 309

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D    Q +LG  +R PRW I+HKF  +QA+T L +I+IQ+GRTG LTPVA+LEPV +GG 
Sbjct: 310 DRLDWQARLGFVSRFPRWAIAHKFPAEQATTILREIEIQVGRTGSLTPVAKLEPVTVGGV 369

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNED I             +DIRVGD+V+++RAG+VIP++V +I  ER   ++
Sbjct: 370 VVSNATLHNEDEIAR-----------KDIRVGDKVVIQRAGDVIPQIVRVIAEERPSHSK 418

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP+ CP C S  VR+++ K G+  A  RCTGGL C AQ  ERLKHFVSR A +I+GL
Sbjct: 419 PYEFPTTCPACGSHAVREMDEK-GEEDARRRCTGGLICPAQAKERLKHFVSRKALDIDGL 477

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT-STTKIENILGFGDVSVTNLYDSINKR 545
           G +Q++ FF        +  P  IF L++R    +   +E   GFG  S  N++ +IN +
Sbjct: 478 GAKQIELFFDK----GVVTAPQHIFQLEQRINELNLPPLEEWEGFGKTSSENIFAAINAK 533

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN-NDDWLSLIRVPLV 604
           R I   RF+  LGI+HVG   +  LA+ +LS+  F   ++  I       +L L  +  +
Sbjct: 534 RQIPFARFLIGLGIQHVGQTNSGLLAQNFLSFDAFQTAMHAAIDARPGPAYLKLSSIDRI 593

Query: 605 GDIIAQAIVEF 615
           GD   + I+ F
Sbjct: 594 GDTTLENILNF 604



 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 91/175 (52%), Gaps = 2/175 (1%)

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD-WLSLIRVPL 603
               +L   I +L ++ V +    ++A+ Y ++  F  E+           + S+  +  
Sbjct: 617 SLEPNLSGQIPALQMKGVNSAACEAMARRYGNWDEFRNELLKANDTKPASAFKSISNIDG 676

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +GD+ A+A+++F+  P N   +  LL E+              +  K +VFTG+L+ + R
Sbjct: 677 MGDVSAEALIDFFMEPHNQDMLTQLLAEIEIEAA-QAIQTDGAVAGKTVVFTGSLELMSR 735

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +A+     LGA V++ +S+KTD ++ G   GSKL+KAQ LGV ++ E+ +L ++
Sbjct: 736 DEAKSKAQSLGAKVASSVSKKTDYVVAGPGAGSKLKKAQDLGVTVLTEQAWLDMI 790


>gi|193216704|ref|YP_001999946.1| DNA ligase [Mycoplasma arthritidis 158L3-1]
 gi|254781372|sp|B3PMJ0|DNLJ_MYCA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193002027|gb|ACF07242.1| DNA ligase [Mycoplasma arthritidis 158L3-1]
          Length = 665

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 216/710 (30%), Positives = 339/710 (47%), Gaps = 50/710 (7%)

Query: 12  LS-IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ++  E+ R E+  L+ +I+  D+ YY    P++ D+ YD    +   +   +      E+
Sbjct: 1   MTEKEKIRNEVFELQAKINEWDNAYYNLDAPLVEDAIYDREILKLKKLEEQYSSYFSFEE 60

Query: 71  -PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             N P  KI  + +    KVTH  P LSL K +  E+++KFI  I +        +  F 
Sbjct: 61  LANSPTQKINAKSSDLFKKVTHDSPMLSLNKAYTEEEIQKFIDNIKKV-----TPTFSFF 115

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           LEPKIDG  I+I+Y  G+   A  RGDG  GEDV+  I+ I  IP    +   + +EVRG
Sbjct: 116 LEPKIDGLSISIKYRNGQLFQAVTRGDGLVGEDVTENIKQIKNIP--KEIAYQKPLEVRG 173

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSE 248
           EVY++ ++F  +N       +   ANPRNAA+G LR+L+      R L+ F++ +    +
Sbjct: 174 EVYLALSEFEKINLNFQKENKPLMANPRNAAAGTLRQLDKEIVANRNLSAFLYNIVAPED 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E    ++ LGF V      A     I SY    K ++ TL Y+ DG+V K++E
Sbjct: 234 HNIFTILEARDFLKNLGFSVTKEATYAKDLSEINSYIENFKHLKKTLDYETDGVVIKLNE 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
                 LG   + P   I+ K+     +T L +I I +GRTG++T  A LEPV + G+ I
Sbjct: 294 LQHYDALGATNKFPHSAIAFKYEPNTTTTVLKNIFITVGRTGLVTYNAELEPVILSGSCI 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           T ATL+N  YIK L            +  GD V +K+AGE+IP V+ ++  +       F
Sbjct: 354 TFATLNNYQYIKDL-----------KLNKGDLVYIKKAGEIIPCVIGLVNKKHEETE--F 400

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           +    CP C S ++              +      C   + +++ HF S+ A  +  LG+
Sbjct: 401 NKFLKCPYCNSDLI-------ETDTLLEQYCSNENCPEIRRKKIIHFASKKAMELNSLGE 453

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +D F         +    D + L+ ++     KI ++  FG  SV N+  SI + +  
Sbjct: 454 KNIDVFINE----GLLENVIDFYKLKEKKD----KIMSLERFGTKSVMNILKSIEESKKN 505

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL+R IF L I+H+G+++A  LA   L   NF             D+ SLI    +G+ I
Sbjct: 506 SLDRVIFGLSIKHIGSKVAYFLASKILKLSNFLD----------FDFDSLISYNEIGEKI 555

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
             ++  +     N   V+ LL           K           V TGTL +  R   ++
Sbjct: 556 ISSLKNWVAKEENKNLVKDLLDNDVDLEFIATKKTER-FAQLSFVITGTLSQ-PRSHFEK 613

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + + G  +S+ +S KT  ++VG++ GSKL KA+ L VKI++EE F  LL
Sbjct: 614 LIKENGGSISSAVSAKTSYLLVGEDAGSKLAKARALNVKILDEEAFNELL 663


>gi|237751760|ref|ZP_04582240.1| NAD-dependent DNA ligase LigA [Helicobacter bilis ATCC 43879]
 gi|229373126|gb|EEO23517.1| NAD-dependent DNA ligase LigA [Helicobacter bilis ATCC 43879]
          Length = 686

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 199/737 (27%), Positives = 325/737 (44%), Gaps = 83/737 (11%)

Query: 14  IEQAR--KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++ +  +E     + ++ +   YY+   PI  D EYD L +                  
Sbjct: 1   MQEIKSHEEYLESIKTLNLYAKHYYELDDPIASDFEYDMLYKAVKLYEENN---IDKIAK 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK----------- 120
           + P  +IG ++     K  H     SLE I+N  DL +++T++     +           
Sbjct: 58  DSPTQRIGDKILKDFSKNKHKKRMWSLEDIFNPSDLDEWLTKLSNAIARVQKTTLSPTLF 117

Query: 121 ------KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
                    N++ F + PK DG  + + YE G    A  RGDG  GE V+   + + ++P
Sbjct: 118 DTETQIDSINNLAFCISPKYDGMSLNLLYENGILQSATTRGDGEIGEVVTQNAKTLHSLP 177

Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DIT 233
               +     IE+RGEV +SK +F  LN E     +  +ANPRNAA+G +R+L+      
Sbjct: 178 HT--IPFKGSIEIRGEVVLSKENFARLNKEQERNNKALFANPRNAAAGSMRQLDSNLTRE 235

Query: 234 RYLNFFVHGLGKTSEIFAKGQ--------YEMLQKMRCLGFPVNNGVRQANTFHGIVSYY 285
           R L+F   G+G       +          Y+ML  +   GF     + + N    I   Y
Sbjct: 236 RNLSFVAWGIGSVDMKELEKYAKRSNLGFYDMLMLLPEFGFSPFRYLERVNA-ESIEREY 294

Query: 286 NEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQ 345
            ++ + R   P+ +DG V  +D+ +LQ +LG   ++PR+  ++KF   +    +  I  Q
Sbjct: 295 QKILNDRDNYPFMLDGFVIVLDDLALQDKLGFTQKAPRFACAYKFPATEVVINIESITPQ 354

Query: 346 IGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKR 405
           +GRTGI+TPVA  +P  + GA I+ ATLHN   I             +DIR+ D  L+ R
Sbjct: 355 VGRTGIITPVANFKPTPLDGAFISRATLHNYKEID-----------QKDIRIRDYCLLVR 403

Query: 406 AGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACS 465
           +G+VIPK+  ++   R  D    + P+ CPIC   +  +           +       C 
Sbjct: 404 SGDVIPKITKVLHERRKGDEIKIAKPTHCPICSHELSYED---------IYIYCTNPNCD 454

Query: 466 AQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE 525
           A    +L HF S+   +I+GLG   ++    +      I+   DI++L+           
Sbjct: 455 AIIKAKLIHFASKKCMDIDGLGSSIIELLVDN----GVIKECKDIYSLKEEDFLRF---- 506

Query: 526 NILGFGDVSVTNLYDSINKR-RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
              GF +    NL ++I     N    RFI +LGI H+G   ++ LA Y           
Sbjct: 507 --EGFKEKKAQNLINAIKDSIENREFWRFIHALGILHIGEVASKKLASY----------- 553

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKN 642
                  + D   L  +   G  +AQ+  +F     N   +  + + + P +     + N
Sbjct: 554 --GYEIFDYDIEKLQEIEGFGKDMAQSFYDF--CIHNKDFINEMQEILKPQLQVKTTQIN 609

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
             S    K  V TGT   + R   +  +  LGA VS+ +S KTD +I G+  GSKL KAQ
Sbjct: 610 TDSIFYQKTCVITGTFA-LSRDSIKAKLESLGAKVSSSISTKTDFLIAGEKAGSKLTKAQ 668

Query: 703 QLGVKIMNEEQFLFLLQ 719
           +LG+KI+   + + +L+
Sbjct: 669 ELGIKIIESSELMQILE 685


>gi|114705256|ref|ZP_01438164.1| DNA ligase, NAD-dependent [Fulvimarina pelagi HTCC2506]
 gi|114540041|gb|EAU43161.1| DNA ligase, NAD-dependent [Fulvimarina pelagi HTCC2506]
          Length = 821

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 250/639 (39%), Positives = 372/639 (58%), Gaps = 39/639 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            P+E L   +A  EL  L +EI+ HD  YY    P + D++YDAL+RR  AI   FP L 
Sbjct: 4   TPVENLDETEAASELERLAREIAEHDRAYYGDDAPTLSDADYDALRRRNTAIEARFPALI 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R+   + P  ++G   + +  KV H++P LSL+  +  ED+  F  R+ R  + +D + +
Sbjct: 64  RA---DSPSKRVGAAPSTTFAKVRHAVPMLSLDNAFTEEDVADFAKRVRRIAKLQDTDGL 120

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
             T EPKIDG  +++RY  G+   AA RGDG  GEDV+   R +  IP V     P++ E
Sbjct: 121 GITAEPKIDGLSLSLRYVNGELETAATRGDGTVGEDVTPNARTVDDIP-VRIDRAPKVFE 179

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEVY++  DF ALN+   A G+  +ANPRNAA+G LR+ +     +R L FF +  G+
Sbjct: 180 VRGEVYMAHADFAALNERQEAAGKPRFANPRNAAAGSLRQKDAEVTRSRPLRFFAYAWGE 239

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            SE+  + Q E++  +   GFPVN  +++  T   ++ +Y  ++  R++L YDIDG+VYK
Sbjct: 240 ASEVPGETQSEVVAAIGKFGFPVNELMQRFETIDALIEHYRRIEENRASLGYDIDGVVYK 299

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+  LQK LG  +R PRW I+HKFA ++A+T L  ID+  GRTG L P+ARLEPV +GG
Sbjct: 300 VDDLRLQKDLGFVSRFPRWAIAHKFAAEKATTVLKGIDVTTGRTGALNPIARLEPVTVGG 359

Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
            +++NATLHNEDYI G+DA G+ +R  G DIR+GD V+++RAG+VIP+++D++  +R   
Sbjct: 360 VVVSNATLHNEDYIAGIDADGETIRPSGLDIRIGDTVVIQRAGDVIPQIIDVVAEKRPAG 419

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A+PF FP+ C +C S  VR++NP+TG+  +   CT GL C AQ  E LKH VSR AF+IE
Sbjct: 420 AKPFVFPTHCAVCGSNAVREMNPRTGRPDSKRHCTAGLTCPAQGREGLKHLVSRSAFDIE 479

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT---------------------- 522
           GLG+  ++  F        +R PADIFTL   +  +                        
Sbjct: 480 GLGETLVEALFDE----GLVRQPADIFTLDFEKMKALLEERALAARREREAAEDEAARAE 535

Query: 523 ------KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                 + ++       S  N++D I+ RR + LERFIF LGI +VG   A++LA+++  
Sbjct: 536 GREPKVRGDDRAYDYTKSTQNIFDGIDARRTLPLERFIFGLGIPNVGETTAKALARHFSD 595

Query: 577 YQNFAQEINNIIAHN-NDDWLSLIRVPLVGDIIAQAIVE 614
                  ++          W+ L  +  +G+   + I++
Sbjct: 596 VAALIGGVDAAEKGKPGSAWIELSALKGIGEKSFEQILD 634



 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 4/157 (2%)

Query: 568 RSLAKYYLSYQNFAQEINNIIA-HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           +SL + Y         I           +L+L     +G +  Q+++ F+    N  AV+
Sbjct: 661 KSLKERYGDASRIRAAILEAKQTAPTQAYLNLTTDSDIGTVATQSLINFFAEDHNRQAVD 720

Query: 627 ALLKEVSPSIGRH---EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           ALLK    +         +  S +    +VFTG+L+K+ R  A+E    LGA VS  +S 
Sbjct: 721 ALLKAGVSTTNERMTAVASNDSPVSGLTIVFTGSLEKMTREAAKEMAEGLGAKVSGSVSN 780

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           KTD+++ G   GSKL KA +LG+++++E+ +   + +
Sbjct: 781 KTDLVVAGPGAGSKLSKASELGIEVIDEDAWFKRIGR 817


>gi|297183498|gb|ADI19628.1| NAD-dependent DNA ligase (contains brct domain type II) [uncultured
           delta proteobacterium HF0770_45N15]
          Length = 655

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 202/699 (28%), Positives = 346/699 (49%), Gaps = 53/699 (7%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
            L Q +   +  YY      + D EYD L  + +A+     +   +     PL +     
Sbjct: 6   DLVQRVHDLNHDYYC-DVATVPDVEYDGLVSQLNALEAQVGESLANV---SPLLQFAANQ 61

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
             +     H+IP LSL  +++ +++ ++   + +       +++ +T E KIDG  I++ 
Sbjct: 62  QEAFPSRRHAIPMLSLGNLYSEQEILEWDENLRKPLGV---STLSYTCELKIDGLAISLI 118

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           YEKG+   A  RGDG +G++V+A +R IP +P  L   +   +EVRGEV++SK+ F  LN
Sbjct: 119 YEKGRLATAVTRGDGTAGDEVTANLRTIPELPVALPEPL--DLEVRGEVFLSKDAFEKLN 176

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262
                     + NPRNAA+G LR L+ +++       V      S I        L ++ 
Sbjct: 177 QRRATQNEPLFRNPRNAAAGTLRTLDTSEV-SRRRLGVFVYACVSGIETPQHSAALDQLV 235

Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
            L FPVN     A +   ++ Y  +  +  S LPY +DG+V KVD +S Q+QLG  A+SP
Sbjct: 236 KLDFPVNPERHFAASITEVLEYCRKWGTHHSELPYAVDGVVLKVDAYSTQRQLGVTAKSP 295

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           RW ++ KF+ +QA +R+  I++ +GRTG++TP+A ++PV + G ++  ATLHN + ++ L
Sbjct: 296 RWAVACKFSTEQAESRIRGIELGVGRTGVITPIALIDPVELNGTMVGRATLHNFEQVRNL 355

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                      D+ +GD V +++ GE+IPK+V +  + R P+A P   P  CP C  +V 
Sbjct: 356 -----------DLHLGDLVTLEKGGEIIPKIVSVARSARFPNALPILPPETCPACDDKVS 404

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
            +             CT    C  Q  ER+ HF SR A ++E +G   +    +      
Sbjct: 405 HEDGE------VDWLCTNP-DCPDQVRERVLHFCSRRALDVETIGPALVVQLLER----G 453

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            +R PAD+F L          +  +   G  S  N+   + + ++  L   +  LGI +V
Sbjct: 454 LVRTPADLFRLNVE------ALSQLERMGKKSAENVVSGLERSKHCRLAALLHGLGIPNV 507

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G + AR LA+ + + Q      +            L+ +  +G +IA ++  F+ + R  
Sbjct: 508 GEKTARLLARRFGTLQTLQTVQH----------EQLLAIDEIGPVIANSVASFFADSRQQ 557

Query: 623 CAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
             V+ LL               +     K +V TG L +  R   ++ + + GA +++ +
Sbjct: 558 ALVDDLLAVGVCPQEEAILEADNPHFSGKMVVLTGALSE-ARDVWKQRLEEAGANITSAV 616

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNE---EQFLFL 717
           S+KTD+++ G+N GSKLEKA + G+++++E   + +L L
Sbjct: 617 SKKTDLVLAGENAGSKLEKAHKFGIQVIDETTAQTWLNL 655


>gi|315652468|ref|ZP_07905453.1| DNA ligase [Eubacterium saburreum DSM 3986]
 gi|315485257|gb|EFU75654.1| DNA ligase [Eubacterium saburreum DSM 3986]
          Length = 649

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/708 (25%), Positives = 319/708 (45%), Gaps = 64/708 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             RK +  L + ++     YY  +  I+ + EYD L     ++             N P 
Sbjct: 2   DKRKRIKELVEILNKAAKSYYVDAVEIMPNIEYDKLYDELVSLEKE----TNVVLSNSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +G E    L K  H  P LSL+K  ++ +L  ++                     K+D
Sbjct: 58  QNVGYETASELPKKAHESPMLSLDKTKSVAELEDWLGDNKALL------------SWKMD 105

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I + Y  G+ V A  RG+G  GE ++   +    +P  L +     + +RGE  I  
Sbjct: 106 GLTIVLTYRGGELVEAVTRGNGIIGEVITNNAKNFQNVP--LRIEYKGELILRGEAVIKY 163

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
           +DF  +ND +       Y NPRN  SG +R+LNP     R + F V  + +   I  +  
Sbjct: 164 SDFKRINDSITDAD-ARYKNPRNLCSGSVRQLNPAVTRERKVYFNVFNVVRADNIDFENS 222

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
                +            +       +     + +S  +      DGLV  +D+ +L ++
Sbjct: 223 KAKQFEWAKNEGFDVVEYK-FTQRASLADDIAKFESKIAENDIPSDGLVLLLDDIALGER 281

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++ PR  ++ K+++++ +T+L  I+    RTG++ PVA  EPV + G  ++ A+LH
Sbjct: 282 LGSTSKFPRNAMAFKWSDERQTTKLKYIEWSPSRTGLINPVAVFEPVELEGTTVSRASLH 341

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N    + L            + VGD + V +A  +IP+V + +             P  C
Sbjct: 342 NVSIFEELM-----------LGVGDEISVYKANMIIPQVYENLTKSNTE-----KIPKIC 385

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C        + ++  L+          C  + +++     SRDA NI+GL +  L+ F
Sbjct: 386 PACGRDTTIKKDNESKVLL-----CTNPDCQIKHIKQYALMASRDALNIDGLSESTLEKF 440

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    I+  +D+F L + +     +I N+ GFG  S   L  ++++ +N ++ RF+
Sbjct: 441 LSK----GFIKSDSDLFRLDKFKD----EIINMEGFGKRSYEKLIAALDEAKNTTVSRFL 492

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           +SLGI  +G+  A+ +AKY+ +         +I    +     L  +  +G+++A +I +
Sbjct: 493 YSLGIAGIGSANAKMIAKYFDN---------DIDRIISASKDDLRDIEGIGEVLAGSIED 543

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQL 673
           F+++ +NI  VE+L K +       E     +   K  V TG+L     R++ +E + + 
Sbjct: 544 FFKSEKNIENVESLRKIL--KFETEESGGGDKFAGKVFVITGSLTHFSNRNEMKELIEKN 601

Query: 674 GAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G  VS  +S KT+ +I  D  +  SK +KA++LGV+I++EE FL LL+
Sbjct: 602 GGKVSGSVSSKTNFLINNDTGSNSSKNKKAKELGVEIISEEDFLKLLE 649


>gi|331086070|ref|ZP_08335153.1| DNA ligase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406993|gb|EGG86498.1| DNA ligase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 653

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/710 (25%), Positives = 307/710 (43%), Gaps = 65/710 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQ ++ +  L Q ++     YYQ +K I+ + EYD L      +             N 
Sbjct: 1   MEQKKQRMQELVQLLNQAGKAYYQDAKEIMSNHEYDRLYDELLVLEQE----LGITMANS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E+   L K  H  P LSL+K    + L++F+                  +  K
Sbjct: 57  PTVNVGYEVLSELPKERHEKPMLSLDKTKETDRLKEFV------------GEKKAVISWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + YE G+   A  RG+G  GE ++   +    +P  L +     + +RGE  I
Sbjct: 105 LDGLTIVLTYENGELKKAVTRGNGEVGEVITNNAKVFQNVP--LRIAYRGELILRGEAVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
              DF  +N+E+  V    Y NPRN  SG +R+LN      R + F+   L K   +  +
Sbjct: 163 GYRDFEKINEEIEDV-DAKYKNPRNLCSGSVRQLNNEITARRNVQFYAFSLVKADGVDFQ 221

Query: 253 GQYEML-QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               +  + ++  GF V                +              DGLV   D+ + 
Sbjct: 222 NSRNIQLEWLKEQGFDVVEHYEVTKDTLEERVRF--FAEHIEENDIPSDGLVLTYDDIAY 279

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            + LG  A+ PR   + K+A++   T L +I+    RTG++ PVA  +PV + G  ++ A
Sbjct: 280 GQSLGSTAKFPRDSFAFKWADEIRETTLREIEWSPSRTGLINPVAIFDPVELEGTTVSRA 339

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           ++HN   ++ L+           + +GD + V +A  +IP++ + +             P
Sbjct: 340 SVHNLSIMEELE-----------LGIGDTIQVYKANMIIPQIAENLTRSGMD-----PVP 383

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C                          C A+ ++    FVSRDA NI+GL +  L
Sbjct: 384 ECCPACGGET-----EIRQVSDTKTLYCTNPECGAKHIKAFSLFVSRDALNIDGLSEATL 438

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F         I   +DIF L+R       +I ++ GFG+ S  NL DSI K R  +L 
Sbjct: 439 EKFITR----GFIHHFSDIFHLERH----GEEIRSMEGFGEKSYKNLQDSIEKARTTTLP 490

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + I+ LGI ++G   A+ + + +           ++      D  +L  +  VGD+IA+A
Sbjct: 491 KLIYGLGIANIGLSNAKMICRAFD---------YDVEKMLQADVEALNEIQGVGDVIARA 541

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670
            V+++    +      LL+EV        +           V TG+++    R++ +E +
Sbjct: 542 FVDYFAVEDHREEFFRLLEEVKIPEEETTQEEQ-IFAGMNFVITGSVEHFANRNEVKEVI 600

Query: 671 TQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              G  V+  ++ KT+ +I    ++  SK +KA++LG+ I++E+ FL ++
Sbjct: 601 ESKGGKVTGSVTSKTNWLINNDVESTSSKNKKARELGIPIISEDTFLKMI 650


>gi|225028066|ref|ZP_03717258.1| hypothetical protein EUBHAL_02336 [Eubacterium hallii DSM 3353]
 gi|224954614|gb|EEG35823.1| hypothetical protein EUBHAL_02336 [Eubacterium hallii DSM 3353]
          Length = 653

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 176/718 (24%), Positives = 308/718 (42%), Gaps = 80/718 (11%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             +  +  L + ++     YYQ  + +  + EYD L     A+               P 
Sbjct: 2   DKQARMKKLVEVLNQASKAYYQEDRELFSNKEYDELYDELQALEAE----TGIVMSQSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +G E+   L K TH  P LSL+K  + E LR ++                  L  K+D
Sbjct: 58  QNVGYEVLSELEKETHESPMLSLDKTKSPEALRDWL------------GEKEGLLSWKMD 105

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y  G    A  RG+G  GE ++   R    +P    +     + +RGE  I  
Sbjct: 106 GLTVVLTYRDGVLQKAVTRGNGVVGEVITNNARVFKNLP--AKIPFAGEVVLRGEAVIKY 163

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
           +DF  +N+ +  V    Y NPRN  SG +R+LN      R + FF   L K      +  
Sbjct: 164 SDFKKINEGIEDVD-ARYKNPRNLCSGSVRQLNNEVTAKRNVFFFAFALVKAEGRELENS 222

Query: 255 YEMLQ-KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            E     ++ LGF +    R       I+              +  DGLV   D+ +   
Sbjct: 223 VESNMLWVQNLGFEIVPYKRV--DRENIMGEIQNFSEKIVENDFPSDGLVLIYDDIAYGI 280

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+ PR  I+ K+A+++A TRLL I+    RTG++ P+A  EPV + G  ++ A+L
Sbjct: 281 SLGRTAKFPRNSIAFKWADEEAETRLLHIEWSPSRTGLINPIAVFEPVELEGTTVSRASL 340

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN   ++GL+           +   D + V +A  +IP++ + +       +        
Sbjct: 341 HNISIMEGLE-----------LGENDHIKVYKANMIIPQIAENLT-----KSGTCQPIEH 384

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C             +            CSA++++   H+VSRDA NI+GL +  L  
Sbjct: 385 CPACGGAT-----EVRIENNVKTLYCVNPYCSAKKVKLFSHYVSRDAMNIDGLSEATLMK 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       +    D++ L++ ++    +I  + G+G+ S  NL  SI K R+  L RF
Sbjct: 440 MIEQ----GFLSELNDLYNLEQYKE----QIIAMDGYGEKSYNNLMQSIEKSRDTQLFRF 491

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           ++ +GI +VG+  AR L +++ +         ++          + ++  +G++IA ++ 
Sbjct: 492 VYGIGILNVGSSNARLLCRHFGN---------SLENLRGASVEEMTQIDGIGEVIATSVH 542

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670
           ++++N  N   +E LL  +                + +K  V TGT++    R + +E +
Sbjct: 543 DYFENEHNQKLLEKLLPYLHFEEENVSAGGEQEQSLLDKTFVITGTVEHFANRKELKEKI 602

Query: 671 TQLGAVVSAILSRKTDIIIVGDNP---------GSKLEKAQQLGVKIMNEEQFLFLLQ 719
             LG  V+  +S+KTD +I  DN                 ++LG+ ++ EE+FL +++
Sbjct: 603 ESLGGKVTGSVSKKTDYLINNDNMSSSSKNKKA-------KELGIPVITEEEFLSMIE 653


>gi|331092462|ref|ZP_08341286.1| DNA ligase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330401202|gb|EGG80794.1| DNA ligase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 653

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 176/712 (24%), Positives = 315/712 (44%), Gaps = 65/712 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   +K +  L   ++     YYQ +  I+ + +YD L      +             N 
Sbjct: 1   MTDKKKRMQELIALLNEAGKAYYQGATEIMSNFQYDKLYDELAELEKE----LNVTLSNS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E+   L K  H  P LSL+K   +  L++F+             +    +  K
Sbjct: 57  PTVNVGYEVLSELPKERHEKPMLSLDKTKEVSSLKEFL------------GNQKAVISWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + Y  G+   A  RG+G  GE ++   +    IP  L ++    + +RGE  I
Sbjct: 105 LDGLTIVLTYRDGELQKAVTRGNGEVGEVITNNAKVFKNIP--LHISYKGELVLRGEAVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
              DF  +N+E+       Y NPRN  SG +R+LN      R + FF   L K   +  K
Sbjct: 163 GYKDFERINEEIEDAD-AKYKNPRNLCSGSVRQLNNEITAKRNVRFFAFSLVKAEGVDFK 221

Query: 253 G-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             + E ++ +   GF V       +            K  ++   +  DGLV   D+ + 
Sbjct: 222 NSRNEQMRWLSQQGFDVVEHEEVTSADIEEKVEMFAHKIEKN--DFPSDGLVLVYDDIAY 279

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            + LG  A+ PR   + K+A++   T L +I+    RTG++ PVA  + V + G  ++ A
Sbjct: 280 GQSLGTTAKFPRDSFAFKWADEIRETTLREIEWSPSRTGLINPVAIFDSVELEGTTVSRA 339

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           ++HN   ++ L+           + +GD + V +A  +IP++ + +      D       
Sbjct: 340 SVHNISIMEELE-----------LGIGDTIQVYKANMIIPQIAENLTRSGVQDIPDV--- 385

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
                    V R+         A         C A++++    F SRDA NI+G+ +  L
Sbjct: 386 -------CPVCREKTEIRKVNNAKALYCTNPECQAKRIKSFALFASRDALNIDGMSEATL 438

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F         I+  ADIF + R ++    KI+++ GFG+ S   L  S+ K R  +L 
Sbjct: 439 EKFILE----GFIKEYADIFHMDRYEE----KIKSMEGFGEKSYNKLQASVEKARTTTLP 490

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + I+SLGI ++G   A+ + K + +         N     N     L ++  VG++IA  
Sbjct: 491 KVIYSLGIANIGLANAKMICKEFQN---------NADEIMNATPERLNQIDGVGEVIAGT 541

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670
            VE++   ++    + LL+E++       +      +  + V TG++     R++ +E +
Sbjct: 542 FVEYFSVEKHRKEFQNLLRELTI-PKESAEEGKQIFDGIQFVITGSVNHFANRNEVKEVI 600

Query: 671 TQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
              G  V+  ++ KT+ +I  D  +  SK +KA++LG+ I++EE+FL +L++
Sbjct: 601 ESKGGKVTGSVTSKTNYLINNDTASTSSKNKKARELGIPIISEEEFLEMLRK 652


>gi|197294788|ref|YP_001799329.1| NAD-dependent DNA ligase [Candidatus Phytoplasma australiense]
 gi|254781387|sp|B1VAY1|DNLJ_PHYAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171854115|emb|CAM12104.1| NAD-dependent DNA ligase [Candidatus Phytoplasma australiense]
          Length = 670

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 213/696 (30%), Positives = 372/696 (53%), Gaps = 45/696 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +++E   K++  L  +++  +  YY  S P + D +YDAL +    +   FP       P
Sbjct: 2   INLELIEKKIKDLTNQLNEANYEYYVKSNPKLTDQQYDALLKELLVLEKKFPQFTL---P 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P  KIGG +      V H+   +SL   +N+++L+ F  RI +       +S     E
Sbjct: 59  YSPTLKIGGFVEKKFSTVKHTSAMMSLANAFNLKELKAFYDRIAK-----KFSSFSMVSE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  ++++Y+KG    A  RG+G  GE+++  ++ I  +P  L L  P  +EVRGE+
Sbjct: 114 LKIDGVAVSLKYKKGILFQALTRGNGVWGEEITKNVQTIKQVP--LKLTQPLDLEVRGEI 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           Y+S + F  LN +     +  ++NPRNAASG +R+LN + + +          +   +  
Sbjct: 172 YLSNSSFQKLNQQRKIAQQPLFSNPRNAASGTIRQLNSSIVAQRNLSIFIYSIQNPYLLK 231

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E L  +  LGF VN   + +++F  +     E++ ++  L Y+ DG+V K++E +L
Sbjct: 232 STQEETLTFLASLGFSVNPYYKCSSSFEELEIKIQELEKLQQNLDYNTDGVVVKINELNL 291

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
              +G+  +SP+W I++KFA K + + + +I  Q+GR+G+LTPV ++ PV + G+L++  
Sbjct: 292 HDSIGKTTKSPKWAIAYKFATKNSESVVQEIIFQVGRSGMLTPVCKIIPVMVDGSLVSKV 351

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
            LHN DYI             +DIR+ D V V +AG VIP++ ++I ++R  D++PF+  
Sbjct: 352 VLHNYDYI-----------CKKDIRLKDYVQVHKAGSVIPEIKEVIKSKRPSDSKPFAMI 400

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S + ++                   C  Q++++L HFVS++A +I+ LG Q L
Sbjct: 401 TQCPSCHSLLNKNKGE-------VDYFCINKNCLEQKIQKLIHFVSKNAMDIDTLGNQTL 453

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             FF  +     I  P+DI+ L+     +   ++ I GFG   V N+  S+ K +N SLE
Sbjct: 454 ITFFNQK----LIENPSDIYLLK----NNLDVLQKINGFGAKKVQNILTSVEKSKNKSLE 505

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             +F LGI+HVG ++++ L K++ S +   +          ++  S+  +P +G+ IA +
Sbjct: 506 NVLFGLGIKHVGLKVSQVLTKHFDSIEILQKTTL-------ENLESIKSIPEIGEKIALS 558

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEY 669
           + +++QNP ++  +  L +            + +     NKK+V TG+LQ   R + ++ 
Sbjct: 559 LQKYFQNPLHLEEITKLKQLGVSFKSTTTSQIKAPNFFTNKKVVLTGSLQNYTRSQIKKL 618

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
           + Q GA+++  LS +T ++I G NPGSKL+KA+ L 
Sbjct: 619 LIQKGAIINDALSSQTHLLITGANPGSKLQKAKTLN 654


>gi|153855784|ref|ZP_01996785.1| hypothetical protein DORLON_02806 [Dorea longicatena DSM 13814]
 gi|149751911|gb|EDM61842.1| hypothetical protein DORLON_02806 [Dorea longicatena DSM 13814]
          Length = 647

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 176/708 (24%), Positives = 306/708 (43%), Gaps = 66/708 (9%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L   ++     YYQ ++ I+ + EYD L      +             N P   +G 
Sbjct: 1   MKELVSLLNKASRAYYQEAQEIMSNYEYDRLYDELKELEDE----LGITLSNSPTVNVGY 56

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           E+   L K  H  P LSL+K   +E+L+ F+                  +  K+DG  + 
Sbjct: 57  EVVSELPKERHESPMLSLDKTKEVEELKNFV------------GDQKVLISWKMDGLTVV 104

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y  GK   A  RG+G  GE ++   +    +P  + +     + +RGE  I   DF  
Sbjct: 105 LTYRDGKLYKAVTRGNGEVGEVITNNAKVFKNVP--VQIAYQGELILRGEAVIGYKDFEK 162

Query: 201 LNDEMIAVGRKPYANPRNAASGILRR-LNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           +N E+  V    Y NPRN  SG +R+  N     R + F+   L +   +  +       
Sbjct: 163 INQEIEDV-DARYKNPRNLCSGSVRQLNNQITAKRNVMFYAFTLVQADGVDFQNSRACQM 221

Query: 260 -KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             ++  GF                    +  S  S   +  DGLV   D+ +  + LG  
Sbjct: 222 EWLKSQGFTTVEYYMVTRDTVE--DEVAKFSSKISENDFPSDGLVLTYDDIAYGRSLGRT 279

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           A+ PR   + K+ ++   T L +I+    RTG++ PVA  +PV + G  ++ A++HN   
Sbjct: 280 AKFPRDSFAFKWQDEIRETVLREIEWSPSRTGLINPVAIFDPVELEGTTVSRASVHNISI 339

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           ++ L+           + +GD++ V +A  +IP++ + +      D            C+
Sbjct: 340 MEELE-----------LGIGDKIEVYKANMIIPQIAENLTRSGVKDIP----------CK 378

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             V +          A         C A+ ++    FVSRDA NIEGL +  L+ F    
Sbjct: 379 CPVCQGETKIRQVGNAKALYCMNPECQAKHVKSFALFVSRDALNIEGLSEATLEKFISR- 437

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I   ADIF L + ++    KI+ + GFG+ S   L +SI K R  +L R I+SLG
Sbjct: 438 ---GYIHTFADIFHLDQYKE----KIQKMEGFGEKSYKKLTESIEKARTTTLPRVIYSLG 490

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +G   A+ + +          ++ +++  +      L  +  VG+++A+A V ++ +
Sbjct: 491 IAGIGLANAKVICRE------LKYDVESLLKVSE---EELNEIQGVGEVLAKAFVGYFAD 541

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVV 677
            +++     LL E++    +         E    V TG+++    R + +E +  LG  V
Sbjct: 542 AKHVENFRRLLNELTIP--KETVTKQQIFEGVNFVITGSVKHFANRGEVKELIESLGGKV 599

Query: 678 SAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +  ++ KT+ +I  D  +  SK +KA +LG+ I++EE FL L+ Q  T
Sbjct: 600 TGSVTSKTNYLINNDVTSTSSKNKKANELGIPIISEETFLELVNQEET 647


>gi|188584367|ref|YP_001927812.1| DNA ligase, NAD-dependent [Methylobacterium populi BJ001]
 gi|254781367|sp|B1Z9P1|DNLJ_METPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|179347865|gb|ACB83277.1| DNA ligase, NAD-dependent [Methylobacterium populi BJ001]
          Length = 814

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 253/629 (40%), Positives = 374/629 (59%), Gaps = 31/629 (4%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           + +    +E+LS + A+   + L + I   +  YY    P + D+EYDAL++  +AI   
Sbjct: 3   RTQASAAVESLSEDAAQARHAELSRAIERANHLYYNEDAPELTDAEYDALRQELEAIEAR 62

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP L  + +       +G + +    KV H++P LSL   +  ED+ +F+ R+ RF    
Sbjct: 63  FPALTGTTEA---SAGVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLT 119

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-N 180
            +  + FT EPKIDG  +++RYE G+ V AA RGDG  GE+V+A    +  IP  LS  +
Sbjct: 120 AEEPVAFTAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVEDIPATLSGKD 179

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           IPE++EVRGEVY+S  DF  +N    A G+  +ANPRNAA+G LR+L+P    +R L FF
Sbjct: 180 IPEVLEVRGEVYLSHEDFAGINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFF 239

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ SE F   Q  +L++ R  G PVN   +   +   ++++Y  +++ R+ L YDI
Sbjct: 240 AYAWGEVSEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRAIEAERAGLGYDI 299

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD+   Q++LG  +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+
Sbjct: 300 DGVVYKVDDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLK 359

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV+D++++
Sbjct: 360 PVTVGGVVVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVMDVVLD 419

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  DA P+ FP  CP C SR VR+LNP+T KL A  RCTGGL C AQ +ERLKHFVSR+
Sbjct: 420 KRPADAVPYVFPETCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRN 479

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR---------------------QQ 518
            F++EG G+  ++  F+    A  ++ PAD+F L+                       + 
Sbjct: 480 GFDLEGFGQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRAEGEP 535

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578
                 +      D ++ NL  S+  RR I+L RF+F+LGI  +G   A++LAK +    
Sbjct: 536 APKKPTKKKGEEEDKAIKNLLASLEARRKIALNRFLFALGIPQIGESTAKALAKRFPDMP 595

Query: 579 NFAQEINNII-AHNNDDWLSLIRVPLVGD 606
                +          DWL L  +P +G 
Sbjct: 596 ALMAALEAATREQAGRDWLELSALPRIGP 624



 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 83/154 (53%), Gaps = 2/154 (1%)

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-VGDIIAQAIVEFYQNPRNICAVE 626
            ++  +Y S +     +    +    D   L      +G +   ++++F+  P N  AV 
Sbjct: 661 EAVLAHYGSEEEADAALERAASQRPGDAYRLFADDGEIGPVATDSLIQFFSEPHNDAAVR 720

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           ALL+EV         + ++    K +VFTGTL+K+ R +A+    +LGA VS  +S KTD
Sbjct: 721 ALLEEVGTEPLAATTSAAAF-AGKTVVFTGTLEKMTRSEAKATAERLGAKVSGSVSAKTD 779

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +++ G   GSKL+ A++ GVK+++E+ +L +L +
Sbjct: 780 LVVAGPGAGSKLKDAERHGVKVVSEDDWLAMLAE 813


>gi|260438468|ref|ZP_05792284.1| DNA ligase, NAD-dependent [Butyrivibrio crossotus DSM 2876]
 gi|292809057|gb|EFF68262.1| DNA ligase, NAD-dependent [Butyrivibrio crossotus DSM 2876]
          Length = 649

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 187/709 (26%), Positives = 318/709 (44%), Gaps = 66/709 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
              + +  L   ++     YY  +  I+ + EYD L      + +             P 
Sbjct: 2   DKSERIKELIDILNEAGKVYYSGTDEIMSNFEYDRLYDELVELENE----TGIHMSGSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +K+G E    L K  H  P LSL+K  +++ L +F                   L  K+D
Sbjct: 58  SKVGYETLSELPKENHEKPMLSLDKTKSVDTLAEFA------------GVHKCLLSWKLD 105

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y  G+ V A  RG+G+ GE ++   +    IP  L++     + +RGE  I+ 
Sbjct: 106 GLTVVLTYNNGELVKAVTRGNGYVGEVITPNAKVFKNIP--LTIPYKGELILRGEAIITY 163

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
           +DF  +ND +I      Y NPRN  SG +R+LN      R +      L K   I     
Sbjct: 164 SDFNRINDSIIDDAE-KYKNPRNLCSGSVRQLNNEITAKRNVKLIAFALIKAEGINFHNS 222

Query: 255 -YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E  + +   GF V    R+      + S             +  DGLV   D+ +   
Sbjct: 223 VEEQFEFLEKQGFEVVE--RKIVDGTTVHSAVQYFSDKIKENDFPSDGLVMIYDDINYGL 280

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+ PR  I+ K+ ++ A T L +I+    RTG++ PVA  +PV + G  +T A++
Sbjct: 281 SLGTTAKFPRNAIAFKWKDETALTTLREIEWSASRTGLINPVAIFDPVELEGTTVTRASV 340

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN   +K L            + +GD++ V +A  +IP++ + I +           P  
Sbjct: 341 HNVSIVKEL-----------KLGIGDKITVYKANMIIPQIAENITSSGTA-----VIPDK 384

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C        +       A+        CSA+ ++R +HF  R+A NIEG+  Q LD 
Sbjct: 385 CPVCGENTQIIES-----AGASFLYCVNKDCSAKHIKRFEHFCERNALNIEGISMQTLDK 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F +       I+   DI+ L R ++    +I ++ GFG  S  N+ +SIN  R   L   
Sbjct: 440 FIEC----GYIKEFEDIYHLDRYEE----RIVSMDGFGKKSYDNMIESINNSRTAMLANV 491

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I+ LGI  +G   AR + +Y+          +++    N     L+ +  +G+++A + V
Sbjct: 492 IYGLGIDGIGLAGARLICRYFE---------DDVYKVINATKDELLLIDGIGEVLADSYV 542

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQ 672
           +++ + +N    E LLKE+   + + E+N +S +  K  V TG+L     R + +  + Q
Sbjct: 543 KYFSDEKNRKEFELLLKEL--HLVKEERNTNSPVSGKTFVITGSLNHYANRDELKAVIEQ 600

Query: 673 LGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G   +  +S KTD +I  D  +  SK +KA++LG+ +++E+ F+  L+
Sbjct: 601 NGGKTTGSVSAKTDYLINNDLTSNSSKNKKAKELGIPVISEDDFIKFLE 649


>gi|220920535|ref|YP_002495836.1| DNA ligase, NAD-dependent [Methylobacterium nodulans ORS 2060]
 gi|254781366|sp|B8ICE5|DNLJ_METNO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219945141|gb|ACL55533.1| DNA ligase, NAD-dependent [Methylobacterium nodulans ORS 2060]
          Length = 829

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 266/644 (41%), Positives = 374/644 (58%), Gaps = 50/644 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P+E ++  QAR+   SL  EI+ HD  Y+    PII D+EYDAL+RR +AI   FP+LA 
Sbjct: 10  PVEEMTAAQAREAHESLSAEIAEHDRRYHGEDAPIISDAEYDALRRRLEAIEERFPELAG 69

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           +         +G + +    KV H++P LSL   +  E++ +F+ R+ RF        + 
Sbjct: 70  TGAA---SVSVGAKASDKFAKVRHAVPMLSLGNAFAEEEITEFVERVRRFLGLPASEPLA 126

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186
           FT EPKIDG  +++RYE G+ V AA RGDG  GEDV+A +R I  IP  L+ +  PEI E
Sbjct: 127 FTAEPKIDGLSLSLRYEGGRLVTAATRGDGEVGEDVTANVRTIREIPHELAGDDVPEICE 186

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245
           VRGEVY+S  DF A+N      GR  +ANPRNAA+G LR+L+P    +R L FF +  G+
Sbjct: 187 VRGEVYLSHADFAAINARQEEAGRPLFANPRNAAAGSLRQLDPGITASRPLRFFAYAAGE 246

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A+ Q  ++   R  G PVN   ++  +   ++++Y  +++ R+ L YDIDG+VYK
Sbjct: 247 MSSWPAETQSGLIGAFRRFGLPVNPRTKRCTSVAEMLAHYRAIETERAELGYDIDGVVYK 306

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VDEF+LQ++LG  AR+PRW ++HKF  ++A T +  I+I +GRTG L P+ARL+PV +GG
Sbjct: 307 VDEFALQRRLGFVARAPRWALAHKFPAQRAVTVIEAIEINVGRTGSLNPLARLKPVTVGG 366

Query: 366 ALITNATLHNEDYIKGLDASGKVM------------------RGGRDIRVGDRVLVKRAG 407
            +++NATLHNEDYI+G+DA G  +                  R G D+RVGD V+V RAG
Sbjct: 367 VVVSNATLHNEDYIRGIDADGNTIRSGINIWDGFRLREDVDLRQGSDVRVGDTVVVLRAG 426

Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
           +VIPKV D+++  R  DA P++FP  CP C S  VR  NP+TGKL +  RCTGGL C AQ
Sbjct: 427 DVIPKVADVVLERRPADAVPYAFPETCPACGSHAVRAYNPRTGKLDSVRRCTGGLICPAQ 486

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR----------- 516
             ERL+HFVSR+AF+IEG G+  +   F+    A  +R PAD+F L              
Sbjct: 487 GQERLRHFVSRNAFDIEGFGETYIATLFE----AGLVRQPADLFRLDFEPLKAAIVARRQ 542

Query: 517 -----------QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
                      +     K +      D ++ NL  ++  RR I L RFIF+LGI  VG  
Sbjct: 543 ALSAERALAAGKTPEAKKAKPKANEEDKAIHNLLAAVEARRTIPLNRFIFALGIEQVGEA 602

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHN-NDDWLSLIRVPLVGDII 608
            A++LAK++       + +    A     DW+ L  +P VG   
Sbjct: 603 TAKALAKHFPDMPALMEGVRAAAACRPGPDWIELASLPRVGPTT 646



 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 80/153 (52%), Gaps = 2/153 (1%)

Query: 568 RSLAKYYLSYQNFAQEIN-NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
            +L   Y         +   +     D +  L     +G +   +++EF+    N+ AVE
Sbjct: 676 EALLAAYGDRDGLRNAVERALRQKPGDAYRHLADDSEIGAVTTASLIEFFSEAHNVEAVE 735

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           ALL+EV           +     + +VFTG+L+++ R +A+    +LGA VS  +S KTD
Sbjct: 736 ALLREVRTERAGTPAAAA-VFSGQTVVFTGSLERMTRSEAKATAERLGAKVSGSVSAKTD 794

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +++ G   GSKL+ A++ GV++++E ++L +++
Sbjct: 795 LVVAGPGAGSKLKDAEKHGVRVISEAEWLAMVE 827


>gi|194246669|ref|YP_002004308.1| NAD-dependent DNA ligase [Candidatus Phytoplasma mali]
 gi|254781388|sp|B3QZS5|DNLJ_PHYMT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193807026|emb|CAP18462.1| NAD-dependent DNA ligase [Candidatus Phytoplasma mali]
          Length = 659

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 210/708 (29%), Positives = 359/708 (50%), Gaps = 51/708 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E+ +K +  L  +I+  +  YY  ++  + D +YDAL R    +   +P+         
Sbjct: 1   MEEIKKRIIFLIDKINKTNYEYYTLNESSLNDQQYDALFRELLYLESKYPEYNYKF---S 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  KIGG ++    K  H    LSL  ++NI++L+ F  RI +        +     E K
Sbjct: 58  PTTKIGGPISSKFHKFLHEKSMLSLNNVFNIKELKLFYDRISKKIS-----NFTLLTELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y+KG    A  RGDG+ GE ++  ++ I  +P  L   +   +EVRGEVY+
Sbjct: 113 IDGLAVSLKYKKGILDKAITRGDGYQGELITDNVKTIKELPLKLKEPL--DLEVRGEVYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
           S   F  LN       +  +ANPRNAASG LR+L+                     F   
Sbjct: 171 SYESFNYLNQIRKKENKSLFANPRNAASGTLRQLDSKVAAERNLSIFLYTIVNPPKFIIT 230

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q  +L+ +  L FPVNN       +  ++   +  + I++ L Y+ DG+V K++E S   
Sbjct: 231 QKSILEFLTYLQFPVNNYYEYVLNWDQLIKKISYYEEIKNHLGYNTDGIVIKINELSFHS 290

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            +G  +++P+W I++KF   +  T + +I  QIGRTGI+TP+A L P  + G++I+   L
Sbjct: 291 IIGYTSKAPKWAIAYKFKVFKTETLINNILFQIGRTGIVTPIAELLPTIVDGSVISKVNL 350

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN DYIK            +DIRV D VLV ++G +IP+++++I  +R  +  PF   + 
Sbjct: 351 HNFDYIK-----------QKDIRVNDFVLVHKSGSIIPEIIEVIKTKR-KNQIPFEMITH 398

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           C  C +++++  +               L C  ++++ L +FVS+ A +I  LG Q L  
Sbjct: 399 CYSCNTKLIKKDSN---------HFCFNLDCEEKKIQELFYFVSKSAMDINVLGLQTLKI 449

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            F        I   +D+++L + ++    ++E + GFG     N+  S+ K +N  L  F
Sbjct: 450 LFYK----GFINNISDLYSLNQYKK----EVEELHGFGKKKFNNIIISLEKSKNKCLSNF 501

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +  LGI++VG  +A+ LA+ + +  N  +              SL+++  +G   AQ I 
Sbjct: 502 LIGLGIKNVGIHLAKILAQKFENIDNLQKA----------SIESLLKIDEIGIKSAQNIK 551

Query: 614 EFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            F+ N +N+  +E                   ++  +NKK++FTG L+K  R++AQ  V 
Sbjct: 552 NFFLNSKNLKLIEKFKNLGLNLFYFKSKNNIKNNIFKNKKVIFTGILEKYSRNQAQNIVI 611

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +LG V+   ++ KT+ +I+G NPGSKL KA++  +K++ E +F  L++
Sbjct: 612 ELGGVIINSITNKTNYLILGKNPGSKLLKAKKFNIKVLQEHEFEELIK 659


>gi|291460667|ref|ZP_06600057.1| DNA ligase, NAD-dependent [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291416626|gb|EFE90345.1| DNA ligase, NAD-dependent [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 664

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 169/710 (23%), Positives = 301/710 (42%), Gaps = 65/710 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L   ++     YYQ    I+ + EYD L      +               P  ++
Sbjct: 4   ERMKELIGILNRASKAYYQDGDEIMSNLEYDKLYDELQGLERE----TGIVLSASPTERV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G E+   L KV H  P LSL+K  + E L +++                  L  K+DG  
Sbjct: 60  GYELLSELPKVRHLSPMLSLDKTKSPEALAEWL------------GDREGLLSWKLDGLT 107

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I + YE G+ V    RG+G  GE V+  +R    +P    +     + +RGE  I  +DF
Sbjct: 108 IVLNYEGGELVRGVTRGNGEIGELVTQNVRVFDNVP--TRIPFSGSLVLRGEALIRYSDF 165

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEM 257
             +ND  I      Y NPRN  +G +R+L+P     R++      L    E         
Sbjct: 166 ERINDG-ILDAEARYKNPRNLCAGSVRQLDPGITKERHVKLLAFSLVSAKEGDGSPVDFQ 224

Query: 258 LQKMRCLGFPVNNGVRQANTF----HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             + R   F    G             +++             +  DGLV  +D+ +  +
Sbjct: 225 NSRRRQFEFLREQGFSVVEYRLVRGGEVLAAVKAFSERVKDNDFPSDGLVLLLDDIAYGE 284

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+ PR  ++ K+ +++A T L +++    RTG++ PVA  +PV + G  ++ A+L
Sbjct: 285 SLGRTAKFPRNALAFKWRDEEAETVLREVEWSPSRTGLINPVAIFDPVELEGTTVSRASL 344

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN  + + L            + +GDRV V +A  +IP++                  + 
Sbjct: 345 HNLSFCEELS-----------LGLGDRVSVYKANMIIPQL----------SENFTKSGTL 383

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
            P  +     +         A         C A+++++   FVSRDA NIEGL +  L+ 
Sbjct: 384 SPPSRCPACGEETEVRKDKGAKFLYCKNPDCPAKRIKKFSLFVSRDALNIEGLSEMTLEK 443

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F         I+   D++ L+R ++    +I ++ GFG+ S   L +++ K R+  L   
Sbjct: 444 FIGH----GFIKSYRDLYHLERHRE----EILSMEGFGERSYERLMEAVEKSRDTLLYHL 495

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I+ LGI  +G   AR L +++            +      +   L+ V  +G+++A+ + 
Sbjct: 496 IYGLGIDGIGLANARLLCRHFH---------QELSLIRGAEKEELLEVDGIGEVLAEKLY 546

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQ 672
            ++ + + +  +  LL E+        +     +  K +V TG L     R + +E + +
Sbjct: 547 AYFHSEKQLSELHELLPELRIGREEEREEEGGALRGKTIVITGNLTHFENRKELEEEILR 606

Query: 673 LGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            G   S  +S+KT  ++  D+     K +KA++LG+ I+ EE+FL +L +
Sbjct: 607 AGGKCSGSVSKKTSYLVNNDSSSQSGKNKKAKELGIPIVTEEEFLKILGE 656


>gi|12045108|ref|NP_072919.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37]
 gi|1352291|sp|P47496|DNLJ_MYCGE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|3844852|gb|AAC71474.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37]
 gi|166078824|gb|ABY79442.1| DNA ligase, NAD-dependent [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 659

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 202/710 (28%), Positives = 354/710 (49%), Gaps = 61/710 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + ++  L   I  +D  YY  S+P+I D EYD L +    +    PDL +    + 
Sbjct: 1   MMDVKLKIQQLVNLIKNYDYHYYVLSEPLIDDFEYDMLYKSLQQLEKDHPDLIQI---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE      K+ H+ P LSLE  ++ +++  FI  I      + ++   F +EPK
Sbjct: 58  PTQRVGGEAVKGFKKLNHNSPMLSLENAFSTKEIANFIDNI----NFQTNSKNEFVVEPK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I++ Y+ G  V+A  RGDG  GEDV   ++ I +IP  L++   + IE+RGE+++
Sbjct: 114 IDGVSISLTYKNGVLVHALTRGDGSVGEDVLNNVKTIKSIP--LTIPFTKTIEIRGEIFV 171

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            K  FLA+N+++     KP+AN RN A+G +R LN      R L    + +    E    
Sbjct: 172 DKKTFLAINNQL----EKPFANARNLAAGTIRNLNSEITAQRKLRALFYYIPNGLEESIT 227

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q  +L++++   FPV++ +R       +++Y       R  L +++DGLV K++     
Sbjct: 228 TQTMVLEQLKQWKFPVSDTIRVFQNKFQLINYLEAFDKKREQLTFNLDGLVIKLNSLLFY 287

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +QLG  ++SPRW I+ KF+ K   T+L  + I IGRTG +   A+LE VN+ G  +T AT
Sbjct: 288 QQLGATSKSPRWAIAFKFSPKFVQTKLTAVLITIGRTGRVNYTAKLESVNLDGTKVTAAT 347

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DYIK            +DIR+ D V++ +AGE+IPKV+ + + +R  D        
Sbjct: 348 LHNFDYIK-----------TKDIRINDTVVIYKAGEIIPKVLKVNLEKRKNDTIIIQEQK 396

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
           +CP C S++V+ ++          +      C  + ++ + +FVS+ A +I GL    + 
Sbjct: 397 YCPSCNSKLVKIVDE-------VDQYCTNETCKERNIQLINYFVSKTAMDINGLNINTIT 449

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             ++       +R   D++ L+ ++         I   GD     L D+I   +   + R
Sbjct: 450 KLYEHN----LVRSIVDLYDLKDKKNQVLKLDLKI---GDKLFNKLVDNIENSKQKGMAR 502

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +  LGI+HVG  +A++LA ++ + +                  +LI +  VG  +A+++
Sbjct: 503 LLTGLGIKHVGNVLAKNLANHFKNIKALQHA----------SLENLISLNDVGITVAESL 552

Query: 613 VEFYQNPRNICAVEAL-LKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQEY 669
             ++ +P ++  +E L L++V       + N   +S    K+ + TG+   I R + ++ 
Sbjct: 553 YNWFHDPNHLQLIEQLELRQVKTDQLPLKINFETNSIYFQKRFLITGSF-NISRDQIKDL 611

Query: 670 VTQLGAV----VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714
              L A      ++ +    D +I G+ P   K+  A++L + I+NE  +
Sbjct: 612 ---LSAKFDCQFASEVKPTVDFVIAGNKPTLRKINHAKELNIPIINEAIW 658


>gi|261749390|ref|YP_003257075.1| DNA ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497482|gb|ACX83932.1| DNA ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 678

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 207/721 (28%), Positives = 348/721 (48%), Gaps = 58/721 (8%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + +  ++++  L +++S ++  YY  +   I D  +D   R    +    P+     DP+
Sbjct: 6   NQKDIKEKIYQLRKKLSEYNYQYYALNTSEISDYNFDKKLRELFLLEKEHPEF---YDPS 62

Query: 73  GPLNKIG--GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            P  +IG  G+         H     SL+  ++ ++L  +  RI +           F  
Sbjct: 63  SPTLRIGVEGKKYADSSIYYHKYKMYSLQNTYSKKELMTWKKRIQKSISS------SFVC 116

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRG 189
           E K DG  I + Y+ G   +A  RGDG  GE+V   +R I +IP  L   N PE +E+RG
Sbjct: 117 ELKYDGVSINLIYKNGFLTHAVTRGDGKKGEEVIENVRTIQSIPLKLIGENHPEYLEIRG 176

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E+++    FL +N +    G+ PYANPRN ASG L+  N  ++ +     +    +   +
Sbjct: 177 EIFLPIKKFLEINAKRTRSGKNPYANPRNTASGTLKIQNSKEVYKRTLSCIVYSVRGKNL 236

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               QY+ LQ +R  GF ++  V        I  + +     + TLPY IDG+V KV+E 
Sbjct: 237 PFDTQYQALQTLRNWGFEISEKVLLCKKIKEIFHFLDYWSQWKQTLPYQIDGIVIKVNEH 296

Query: 310 SLQKQLGERARSPRWMISHKFAEKQ-ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             Q  LG   + PRW I++KF  K+ + T+LL++  Q+GRTGI+TPVA + P  I G ++
Sbjct: 297 QNQSLLGYTNKYPRWAIAYKFRPKKLSETKLLNLKFQVGRTGIITPVAEVIPKKISGTIV 356

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
              TL+N  +I+ +            I  GD +L+++ G++IPKV  I + +R  +A P 
Sbjct: 357 KRVTLYNHHFIQKM-----------GIHYGDALLLEKGGDIIPKVAKINLKKRLINASPI 405

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            F + CP C+S + +                    C +Q + +++HFVS  A NI+G+G 
Sbjct: 406 YFLTKCPSCRSHLRKKNE---------SFYCPNNFCPSQNMRKIQHFVSERAMNIKGIGN 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +   ++       +   +D++ L+R       K+  I G  +    +L  +I K ++ 
Sbjct: 457 EMIKKLYQK----GFLYNISDLYQLKRE------KLLQIDGVKEKLADSLIKNIEKSKDN 506

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
             +R +++LGI HVG  I++ L + +L+  +  Q           D   L  +  +G  I
Sbjct: 507 PSQRVLYALGIPHVGEYISKKLTEKFLNINSLIQA----------DEAQLTSISGIGKKI 556

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           +++I  ++    N   VE L+K              KN  S IE K  +FTG L  + R+
Sbjct: 557 SESIKTYFFTKENKKIVENLMKHGLNFSDFYKKNPVKNQYSPIEGKSFLFTGKLSSMTRN 616

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQYNT 723
           KA+  V  LG  V   ++ + + I+VG N GSKLE+  +   +KI+ E+ F+ LL+Q   
Sbjct: 617 KAKNLVELLGGRVFHTVNNQINFIVVGKNFGSKLERCMKKNHIKILTEDIFIKLLEQEKK 676

Query: 724 T 724
            
Sbjct: 677 E 677


>gi|210617503|ref|ZP_03291606.1| hypothetical protein CLONEX_03828 [Clostridium nexile DSM 1787]
 gi|210149290|gb|EEA80299.1| hypothetical protein CLONEX_03828 [Clostridium nexile DSM 1787]
          Length = 653

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 186/711 (26%), Positives = 319/711 (44%), Gaps = 65/711 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQ ++ +  L Q ++     YYQ +  I+ + EYD L     A+             + 
Sbjct: 1   MEQKKQRMQELVQLLNEAGKAYYQGTAEIMSNYEYDKLYDELLALEKE----LGITLASS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E+   L K  H  P LSL+K   +  L++F+                  +  K
Sbjct: 57  PTVNVGYEVLSELPKERHEKPMLSLDKTKEVSKLKEFLGSQKAR------------ISWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + Y+ G    A  RG+G  GE ++   +    +P  L ++    + +RGE  I
Sbjct: 105 LDGLTIVLTYQNGTLQKAVTRGNGEVGEVITNNAKVFKNLP--LHISYQGELILRGEAII 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
              DF  +N+E+  V    Y NPRN  SG +R+LN      R + FF   L K  ++  K
Sbjct: 163 GYRDFEKINEEIEDV-DAKYKNPRNLCSGSVRQLNNEITAKRNVKFFAFSLVKADDVDFK 221

Query: 253 G-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             +   ++ ++  GF V  G             +   K   +   +  DGLV   D+ + 
Sbjct: 222 NSRIYQMEWLKEQGFEVVEGYEVTAGTIEERVKFFSEKIADN--DFPSDGLVLVYDDIAY 279

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            + LG  ++ PR   + K+A++   T LL+I+    RTG++ PVA  EPV + G  ++ A
Sbjct: 280 GQSLGTTSKFPRDSFAFKWADEIRETTLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRA 339

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           ++HN   ++ L+           + +GD + V +A  +IP++ + +      D      P
Sbjct: 340 SVHNISIMEELE-----------LGIGDTIAVYKANMIIPQIAENLTRSGVKD-----IP 383

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C  +             A         C A+ L+    FVSRDA NI+GL +  L
Sbjct: 384 EECPVCHGKT-----EIRKVSDAKALYCTNEECGAKHLKSFALFVSRDALNIDGLSEATL 438

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F         I   +DIF L++ +      I+++ GFG+ S  NL  SI K R  +L 
Sbjct: 439 EKFIAK----GFINHYSDIFHLEQYKD----AIKSMEGFGEKSYVNLQKSIEKARVTTLP 490

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + I+SLGI ++G   A+ + K         +   +I    +     L  +  +G +IA+A
Sbjct: 491 KLIYSLGIANIGLANAKVICK---------ELNFDIEKMLHVTEEELSEISGIGPVIAKA 541

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670
            V ++   +++     LL E+        K      EN   V TG+++    R++ +  +
Sbjct: 542 FVSYFAKEQHVEEFRRLLTELEIPKEEESKEA-QIFENMNFVITGSVEHFANRNEVKAVI 600

Query: 671 TQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G  V+  ++ KT+ +I    ++  SK +KA++LGV I++EE FL +L+
Sbjct: 601 ESKGGKVTGSVTSKTNYLINNDIESTSSKNKKARELGVPIISEETFLKMLE 651


>gi|255660255|ref|ZP_05405664.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37]
          Length = 658

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 202/708 (28%), Positives = 353/708 (49%), Gaps = 61/708 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             + ++  L   I  +D  YY  S+P+I D EYD L +    +    PDL +    + P 
Sbjct: 2   DVKLKIQQLVNLIKNYDYHYYVLSEPLIDDFEYDMLYKSLQQLEKDHPDLIQI---DSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GGE      K+ H+ P LSLE  ++ +++  FI  I      + ++   F +EPKID
Sbjct: 59  QRVGGEAVKGFKKLNHNSPMLSLENAFSTKEIANFIDNI----NFQTNSKNEFVVEPKID 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I++ Y+ G  V+A  RGDG  GEDV   ++ I +IP  L++   + IE+RGE+++ K
Sbjct: 115 GVSISLTYKNGVLVHALTRGDGSVGEDVLNNVKTIKSIP--LTIPFTKTIEIRGEIFVDK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
             FLA+N+++     KP+AN RN A+G +R LN      R L    + +    E     Q
Sbjct: 173 KTFLAINNQL----EKPFANARNLAAGTIRNLNSEITAQRKLRALFYYIPNGLEESITTQ 228

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
             +L++++   FPV++ +R       +++Y       R  L +++DGLV K++     +Q
Sbjct: 229 TMVLEQLKQWKFPVSDTIRVFQNKFQLINYLEAFDKKREQLTFNLDGLVIKLNSLLFYQQ 288

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++SPRW I+ KF+ K   T+L  + I IGRTG +   A+LE VN+ G  +T ATLH
Sbjct: 289 LGATSKSPRWAIAFKFSPKFVQTKLTAVLITIGRTGRVNYTAKLESVNLDGTKVTAATLH 348

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N DYIK            +DIR+ D V++ +AGE+IPKV+ + + +R  D        +C
Sbjct: 349 NFDYIK-----------TKDIRINDTVVIYKAGEIIPKVLKVNLEKRKNDTIIIQEQKYC 397

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S++V+ ++          +      C  + ++ + +FVS+ A +I GL    +   
Sbjct: 398 PSCNSKLVKIVDE-------VDQYCTNETCKERNIQLINYFVSKTAMDINGLNINTITKL 450

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++       +R   D++ L+ ++         I   GD     L D+I   +   + R +
Sbjct: 451 YEHN----LVRSIVDLYDLKDKKNQVLKLDLKI---GDKLFNKLVDNIENSKQKGMARLL 503

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             LGI+HVG  +A++LA ++ + +                  +LI +  VG  +A+++  
Sbjct: 504 TGLGIKHVGNVLAKNLANHFKNIKALQHA----------SLENLISLNDVGITVAESLYN 553

Query: 615 FYQNPRNICAVEAL-LKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           ++ +P ++  +E L L++V       + N   +S    K+ + TG+   I R + ++   
Sbjct: 554 WFHDPNHLQLIEQLELRQVKTDQLPLKINFETNSIYFQKRFLITGSF-NISRDQIKDL-- 610

Query: 672 QLGAV----VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714
            L A      ++ +    D +I G+ P   K+  A++L + I+NE  +
Sbjct: 611 -LSAKFDCQFASEVKPTVDFVIAGNKPTLRKINHAKELNIPIINEAIW 657


>gi|269114974|ref|YP_003302737.1| NAD(+)-dependent DNA ligase [Mycoplasma hominis]
 gi|268322599|emb|CAX37334.1| NAD(+)-dependent DNA ligase [Mycoplasma hominis ATCC 23114]
          Length = 668

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 222/710 (31%), Positives = 363/710 (51%), Gaps = 49/710 (6%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED-P 71
            IE+ RKE+  L+ +IS  D+ YY    P + D  YD    +  A+   +      E+  
Sbjct: 6   DIEKIRKEIFDLQAKISAWDNAYYNLDSPEVPDEIYDVEFNKLKALEEKYASFFSDEELK 65

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  KI    +    KV H  P LSL K +++++++KFI  I +       +   F +E
Sbjct: 66  NSPTRKINALASDLFKKVKHKRPMLSLNKAYSLDEIQKFIDNIKKI-----TSDFSFFIE 120

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I+I YE GK V A  RGDG +GEDV+A +  +  IP   ++   E +EVRGEV
Sbjct: 121 PKIDGLSISIIYEDGKLVRAITRGDGITGEDVTANVVQMSCIP--KTIEYKESLEVRGEV 178

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF 250
           Y++ +DF  LN ++    +   ANPRNAA+G LR+LN      R L+ F++ +    +  
Sbjct: 179 YLAISDFEKLNLKLGQENKNKLANPRNAAAGTLRQLNSQIIKERNLSAFLYYVVDPLQHN 238

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K   E  + ++  GFPV + V+ ANT   I  Y    K+ +  + Y+ DG+V K++E  
Sbjct: 239 IKTMQEEHEFLKTYGFPVTHEVQHANTLQDIEEYIRNFKNQKLLIDYETDGVVIKLNEVQ 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
              +LG  A+ P + I+ K+     +T +  I   +GRTG++T  A LEPV I G+L++ 
Sbjct: 299 YFDKLGSTAKFPHYAIAFKYEPNVETTTIKRIYATVGRTGLVTYNAELEPVEISGSLVSF 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATL+N  YIK L           ++   D V +K+AGE+IP V+ +I  ++  D   F  
Sbjct: 359 ATLNNFQYIKDL-----------NLNENDLVYIKKAGEIIPCVIGLISGKKEID--HFQK 405

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
             FCP C +++         +      C+       Q+  +L HF S+D  +I  +G++ 
Sbjct: 406 VEFCPYCHNKL------VDSETGLEQFCSNDQCPEIQR-RKLIHFCSKDGLDINTMGERN 458

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D F K+      I  P DIF L+ ++Q     +  +   G+ S+ N+  SI++ +N  L
Sbjct: 459 IDLFLKNS----LISNPIDIFNLKNKKQ----DLLKLNRMGEKSIENILISIDECKNKPL 510

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + I +L I  +G ++A+ +A    S  N            N D+  LI    +GD I  
Sbjct: 511 YKMISALSIPLIGVKLAKFVASKIKSLHNLL----------NYDFSQLIDYHEIGDKIIN 560

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +I+ +  N  N   VE ++  +   +    +++++ +ENK  V TGTL    R   +  +
Sbjct: 561 SIISWISNDFNKKLVEDIIN-LGYDLKDENESITNLLENKSFVITGTL-GHPRSYFERLI 618

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + G ++ + +S KT+ ++ G+N GSKL+KA +L + I+ EE    ++ Q
Sbjct: 619 EKNGGLIHSSISSKTNYLLAGENAGSKLQKANKLNITIITEEDLFKMIGQ 668


>gi|254564006|ref|YP_003071101.1| DNA ligase [Methylobacterium extorquens DM4]
 gi|254271284|emb|CAX27296.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens DM4]
          Length = 814

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 254/630 (40%), Positives = 374/630 (59%), Gaps = 31/630 (4%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           +       +EALS + A+   + L + I   +  YY    P + D+EYDAL++  +AI  
Sbjct: 2   LSTPLSAAVEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEA 61

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FP L  + +       +G + +    KV H++P LSL   +  ED+ +F+ R+ RF   
Sbjct: 62  RFPALTGTTEA---SAGVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNL 118

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             + ++ FT EPKIDG  +++RYE G+ V AA RGDG  GE+V+A    +  IP  LS  
Sbjct: 119 PAEEAVAFTAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVDDIPETLSGE 178

Query: 181 -IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
            IPE++EVRGE+Y+S +DF A+N    A G+  +ANPRNAA+G LR+L+P    +R L F
Sbjct: 179 GIPEVLEVRGEIYLSHDDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRF 238

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F +  G+ SE F   Q  +L++ R  G PVN   +   +   ++++Y  +++ R+ L YD
Sbjct: 239 FAYAWGEVSEPFNDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRAIEAERAGLGYD 298

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD+   Q++LG  +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL
Sbjct: 299 IDGVVYKVDDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARL 358

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV +GG +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV D+++
Sbjct: 359 KPVTVGGVVVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVL 418

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           ++R  DA P+ FP  CP C SR VR+LNP+T KL A  RCTGGL C AQ +ERLKHFVSR
Sbjct: 419 DKRPADAVPYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSR 478

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR---------------------Q 517
           + F++EG G+  ++  F+    A  ++ PAD+F L+                       +
Sbjct: 479 NGFDLEGFGQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRTEGE 534

Query: 518 QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
                  +      D ++ NL  S+  RR I L RF+F+LGI  +G   A++LAK +   
Sbjct: 535 PAPKKPTKKKGEEEDKAIKNLLASLEARRKIPLNRFLFALGIPQIGESTAKALAKRFPDM 594

Query: 578 QNFAQEINNIIAH-NNDDWLSLIRVPLVGD 606
                 ++         DWL L  +P +G 
Sbjct: 595 PALMAALSAATQEQAGQDWLELSALPRIGP 624



 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 2/154 (1%)

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-VGDIIAQAIVEFYQNPRNICAVE 626
            ++  +Y S       +    +    D   L      +G +   ++++F+  P N  AV 
Sbjct: 661 EAVLAHYGSEAEADAALERAASQRPGDAYRLFADDGEIGPVATDSLIQFFSEPHNDAAVR 720

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           ALL+EV           ++    K +VFTG+L+K+ R +A+    +LGA VS  +S KTD
Sbjct: 721 ALLEEVGTEP-LVATTSAAAFAGKTVVFTGSLEKMTRSEAKATAERLGAKVSGSVSAKTD 779

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +++ G   GSKL+ A++ GVK+++E+ +L +L  
Sbjct: 780 LVVAGPGAGSKLKDAEKHGVKVVSEDDWLAMLAD 813


>gi|325261872|ref|ZP_08128610.1| DNA ligase, NAD-dependent [Clostridium sp. D5]
 gi|324033326|gb|EGB94603.1| DNA ligase, NAD-dependent [Clostridium sp. D5]
          Length = 651

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 181/710 (25%), Positives = 310/710 (43%), Gaps = 65/710 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   +  +  L + ++     Y Q    I+ + EYD L      +         +   + 
Sbjct: 1   MADKKNRMQELVELLNRARRSYEQEDTEIMSNYEYDKLYDELLGLEQE----LGTTLASS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E+   L K  H  P LSL+K  ++E L+ F+                  +  K
Sbjct: 57  PTINVGYEVLSELPKERHERPMLSLDKTKDVEQLKTFL------------GDKEAVISWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + Y     V A  RG+G  GE ++   +    +P    +     + +RGE  I
Sbjct: 105 LDGLTIVLTYRDKTLVKAVTRGNGEVGEVITNNAKVFKNLPMH--IPFDGELILRGEAVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
              DF  +N E+  V    Y NPRN  SG +R+LN      R + FF   L   + +  K
Sbjct: 163 GYKDFEKINAEIEDVD-AKYKNPRNLCSGSVRQLNNEITAKRNVRFFAFSLVSAAGVDFK 221

Query: 253 G-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             + E    +   GF V                +   +   +   +  DGLV   D+ + 
Sbjct: 222 NSRTEQFDWLEKQGFEVVEHHLVTADTIEEQVEWFAGEIAEN--DFPSDGLVLVYDDIAY 279

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            + LG  A+ PR   + K+A++   T LL+I+    RTG++ PVA  EPV + G  ++ A
Sbjct: 280 GQSLGSTAKFPRDSYAFKWADEIRDTTLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRA 339

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           ++HN   ++ L+           + VGD + V +A  +IP++ + +      D      P
Sbjct: 340 SVHNLSIMEELE-----------LGVGDEIQVYKANMIIPQIAENLTRSGVKD-----IP 383

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP+C       +   T  L           C A+Q++    FVSRDA N+EGL +  L
Sbjct: 384 SACPVCGHDTRISMENDTKTL-----YCTNPQCQAKQIKSFALFVSRDALNMEGLSEATL 438

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F         I+   DIF L R ++    +I+ + GFG+ S  NL +S+   RN +L 
Sbjct: 439 EKFIAR----GFIKDYIDIFHLDRYEE----EIKTMDGFGEKSYVNLINSVENSRNTTLP 490

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + ++SLGI ++G   A+ + +   +         +           L  +  VG +IA+ 
Sbjct: 491 KLVYSLGIANIGLANAKMICRALGN---------DPQKLTEATVEELSEISGVGGVIAKT 541

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670
            V+++ +P +      LL+EV   +   +       EN   V TG+++    R++ +E +
Sbjct: 542 FVDYFADPGHRELFARLLEEVEIPVEEVQAEA-QIFENMNFVITGSVEHFANRNEVKELI 600

Query: 671 TQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
              G  V+  ++ KT+ +I  D  +  SK +KA+ L + I++EE+FL +L
Sbjct: 601 ESRGGKVTGSVTSKTNYLINNDVQSASSKNKKARDLEIPIISEEEFLKML 650


>gi|218133029|ref|ZP_03461833.1| hypothetical protein BACPEC_00890 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991902|gb|EEC57906.1| hypothetical protein BACPEC_00890 [Bacteroides pectinophilus ATCC
           43243]
          Length = 656

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 164/724 (22%), Positives = 301/724 (41%), Gaps = 87/724 (12%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++ +    +  L   ++     YY   + I+ + EYDAL      +             +
Sbjct: 4   TMNRDIDRIKELVDILNKAGRAYYAQGQEIMSNYEYDALYDELAELEKK----TGCVLAS 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +G E+   L K  H  P LSL K  ++++L  ++                     
Sbjct: 60  SPTVNVGYEVLSELPKERHEKPMLSLGKTKSVDELVSWLGSQKGLL------------SW 107

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  I + Y  G+   A  RG+G  GE ++   +    +P  +++     + +RGE  
Sbjct: 108 KMDGLTIVLTYNNGEMTKAVTRGNGEVGEVITGNAKVFANVP--VTIPYKGELILRGEAV 165

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFA 251
           I  +DF  +N+ +   G   Y NPRN  SG +R+LN      R +NFF   L K   +  
Sbjct: 166 IRYSDFEKINELIPEEG-AKYKNPRNLCSGSVRQLNSRITKERNVNFFAFTLVKADGVDF 224

Query: 252 KGQYEML-QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           K       + +   GF                  + E  +      +  DGLV   D+ +
Sbjct: 225 KNSRREQLEWLASQGFQTVEYKEVTADNLRSTVSWFE--NAIKDNDFPSDGLVILYDDIA 282

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
               LG  A+ PR  ++ K+ ++ A T+LL+I+    RTG++ PVA  EPV + G  ++ 
Sbjct: 283 YGDSLGMTAKFPRNSLAFKWTDETAQTKLLEIEWSASRTGLINPVAVFEPVELEGTSVSR 342

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A++HN   ++ L+           + VGD + V +A  +IP++   +      D      
Sbjct: 343 ASVHNISIMEELE-----------LGVGDTIEVYKANMIIPQIAKNLTRSGVKDIPQI-- 389

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
              CP+C  +             A         C A+ ++   HFV+RDA NI+GL +  
Sbjct: 390 ---CPVCGMKT-----EIRSLNDAKSLYCTNPDCQAKHVKSFVHFVARDAMNIDGLSEAT 441

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+ F +       +   AD++ L   +      I ++ G G  S  N+  +I++ R+ +L
Sbjct: 442 LEKFIQH----GMLHEFADLYHLDDYRD----TIIDMDGLGVKSYDNMMAAIDRSRHTTL 493

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + I+SLGI +VG   A+ + K   +                     L  +  VG++IA 
Sbjct: 494 PKLIYSLGIANVGLSNAKMIVKNTGTLDRILSATR----------EELCAIDGVGEVIAD 543

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEY 669
           + V ++ + ++   +  L+ E+           ++ + +   V TG+L     R++ +E 
Sbjct: 544 SFVSYFADDKHRQGLNRLVAELDIEAEEMASGENAVLADMVFVITGSLNHYSNRNELKEL 603

Query: 670 VTQLGAVVSAILSRKTDIII-------------VGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           + +LG  V+  ++ KT  +I                        A +LGV ++ E++F+ 
Sbjct: 604 IEKLGGKVTGSVTGKTSYLINNDSTSSSSKNKT-----------AAKLGVPVITEDEFIK 652

Query: 717 LLQQ 720
           ++++
Sbjct: 653 MIEE 656


>gi|163854038|ref|YP_001642081.1| DNA ligase, NAD-dependent [Methylobacterium extorquens PA1]
 gi|254781364|sp|A9VWA4|DNLJ_METEP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|163665643|gb|ABY33010.1| DNA ligase, NAD-dependent [Methylobacterium extorquens PA1]
          Length = 814

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 255/629 (40%), Positives = 371/629 (58%), Gaps = 31/629 (4%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
                  +EALS + A+   + L + I   +  YY    P + D+EYDAL++  +AI   
Sbjct: 3   STPLSAAVEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEAR 62

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP L  + +       +G + +    KV H++P LSL   +  ED+ +F+ R+ RF    
Sbjct: 63  FPALTGTTEA---SAGVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLP 119

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
            + S+ FT EPKIDG  +++RYE G+ V AA RGDG  GE+V+A    +  IP  LS   
Sbjct: 120 AEESVAFTAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVDDIPETLSGEN 179

Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            PE++EVRGEVY+S  DF A+N    A G+  +ANPRNAA+G LR+L+P    +R L FF
Sbjct: 180 IPEVLEVRGEVYLSHEDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFF 239

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ SE F   Q  +L++ R  G PVN   +   +   ++++Y  +++ R+ L YDI
Sbjct: 240 AYAWGEVSEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRTIEAERAGLGYDI 299

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD+   Q++LG  +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+
Sbjct: 300 DGVVYKVDDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLK 359

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV D+++ 
Sbjct: 360 PVTVGGVVVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVIE 419

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  DA P+ FP  CP C SR VR+LNP+T KL A  RCTGGL C AQ +ERLKHFVSR+
Sbjct: 420 KRPADAVPYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRN 479

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR---------------------QQ 518
            F++EG G+  ++  F+    A  ++ PAD+F L+                       + 
Sbjct: 480 GFDLEGFGQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARRETLSAQRRSEGEP 535

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578
                 +      D ++ NL  S++ RR I L RF+F+LGI  +G   A++LAK +    
Sbjct: 536 APKKPTKKKGEEEDKAIKNLLASLDARRTIPLNRFLFALGIPQIGESTAKALAKRFPDMP 595

Query: 579 NFAQEINNII-AHNNDDWLSLIRVPLVGD 606
           +    +          DWL L  +P +G 
Sbjct: 596 SLMAALEAATREQAGRDWLELSALPRIGP 624



 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 83/154 (53%), Gaps = 2/154 (1%)

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-VGDIIAQAIVEFYQNPRNICAVE 626
            ++  +Y S +     +    +    D   L      +G +   ++++F+  P N  AV 
Sbjct: 661 EAVLAHYGSEEKVDAALERAASQRPGDAYRLFADDGEIGPVATDSLIQFFSEPHNDAAVR 720

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           ALL+EV         + ++    K +VFTG+L+K+ R +A+    +LGA VS  +S KTD
Sbjct: 721 ALLEEVGTEPLATTTSAAAF-AGKTVVFTGSLEKMTRSEAKATAERLGAKVSGSVSAKTD 779

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +++ G   GSKL+ A++ GVK+++E+ +L +L +
Sbjct: 780 LVVAGPGAGSKLKDAEKHGVKVVSEDDWLAMLAE 813


>gi|154502207|ref|ZP_02039267.1| hypothetical protein RUMGNA_00017 [Ruminococcus gnavus ATCC 29149]
 gi|153797086|gb|EDN79506.1| hypothetical protein RUMGNA_00017 [Ruminococcus gnavus ATCC 29149]
          Length = 663

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 177/719 (24%), Positives = 309/719 (42%), Gaps = 72/719 (10%)

Query: 12  LSIEQAR--------KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           ++ E+ +        K +  L ++++ + D YY  ++  + D+EYD L      + +   
Sbjct: 3   MNEEKMQRSDLMDKVKRIKELVEQLNEYRDAYYNEARSDVSDAEYDRLFDELSELENE-- 60

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
                   N P   +G E+   L KV HS P LSL+K  +++DL KF             
Sbjct: 61  --TGVVYTNSPTQSVGYEVKSELEKVKHSHPMLSLDKTKSVDDLVKFA------------ 106

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
                 L  K+DG    + YE G+ V A  RGDG  GE ++   +    IP  LS++   
Sbjct: 107 GDKDCILSLKMDGLTCLLTYENGELVQAETRGDGEIGELITHNAKVFENIP--LSIDYKG 164

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHG 242
             E+ GE  I+  DF  +N  +     K Y NPRN ASG +R+L+      R++ F    
Sbjct: 165 HFEIEGEAIITYEDFDKINKSL--PDDKKYKNPRNLASGSVRQLDSKIAAQRHIKFIAWK 222

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           +       +                    +R       I     +++       + IDGL
Sbjct: 223 VPTDIASSSFINRLQYALDIGFDTVPFLPIRGNCNAEFINIVVEQLRKRAKEKSFPIDGL 282

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V   ++ +  + LG     P+  I+ KFAE    T L +I+  IG+TG LTPVA  + V+
Sbjct: 283 VATYNDITYGESLGMTGHHPKHSIAFKFAEDSEETVLREIEWSIGKTGTLTPVAIFDSVD 342

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  ++ A+LHN   +K L           +I +G  V V +  E+IP+++    N   
Sbjct: 343 LAGTSVSRASLHNISIMKEL-----------NISIGSTVTVVKKNEIIPQIISCDANAMD 391

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D      P+ CP+C           +  L+  +       C  + L R+ HFVS+   +
Sbjct: 392 AD-----IPTTCPVCGGETRIVKENDSEVLMCVNP-----HCKGKLLGRVSHFVSKKGMD 441

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I GL ++ +    +       I    DI+ L +       ++  + GFG  SV  L  SI
Sbjct: 442 ISGLSEETIKKLIE----LGWITEITDIYNLDQY----YDRLSTMSGFGKKSVDKLRTSI 493

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              + + L++FI SL +  +G   ++ L K + ++  F              +    ++ 
Sbjct: 494 ENSKTVRLDKFIASLSVPGIGTSQSKELVKAFGTWDKFRDASVG--------YYDFTQLD 545

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
             GD++   I  ++++  N   +   L  +           ++ +  K  V TG + K +
Sbjct: 546 GFGDVLNNNIHSWFEDMSN---IADYLASLMTFESEDNSKTNNSLNGKSFVVTGKVYKFK 602

Query: 663 -RHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R + +E + + G  V+  +++ T  +I    ++  SK +KA++LGV+I+NEEQ + +L
Sbjct: 603 NRDEVKEAIEKFGGKVTGSVTKSTFALINNDIESNSSKNKKAKELGVQIINEEQLIEML 661


>gi|80159718|ref|YP_398462.1| putative NAD-dependent DNA ligase [Clostridium phage c-st]
 gi|78675308|dbj|BAE47730.1| putative NAD-dependent DNA ligase [Clostridium phage c-st]
          Length = 649

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 187/711 (26%), Positives = 336/711 (47%), Gaps = 67/711 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   + +  L +E++   + YY   K ++ D E+D        +             N 
Sbjct: 1   MENQIQRVKKLIKELNDASNKYYNSDKTVMTDKEWDDKYEELKQLEQE----TGVVFSNS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+G E+   L KV H+IP  SLEK  +I +L KFI                  +  K
Sbjct: 57  PTQKVGYEVKSKLDKVVHNIPLKSLEKTKSINNLEKFIR------------GKTIIIMDK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG    + YE G+ +  + RG+G  GED++  ++    IP  L ++    +++ GE  I
Sbjct: 105 GDGLTCELIYENGELIQGSTRGNGTIGEDITHNVKTFKNIP--LQIDFKGYLKLSGESVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252
              DF  +N ++    +  Y+N RN  +G +R+L+      R + F+   L +   +  K
Sbjct: 163 LDRDFELINSKLDEADK--YSNSRNLVAGSVRQLDSKICSNRNVRFYAFNLLECENVDFK 220

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            + +  + +  LGF +    +  +    +    + M+       + IDGLV+  ++    
Sbjct: 221 TKEDQFKFLNQLGFEIIEYTK-CDPKQDLEGIISNMQKSAYERGFPIDGLVFTYNDIKYA 279

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG+    P   I++KF +++  T+ +  + Q+ RTG++ PVA+ EPV I G++I  AT
Sbjct: 280 NSLGDTLHHPLHSIAYKFYDEEYETKYITTEWQVSRTGMINPVAKFEPVEIEGSVIERAT 339

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DY + L            +  GD + V +A +VIPKV+                P 
Sbjct: 340 LHNLDYFQDL-----------KLGQGDTIKVIKANQVIPKVMSNKTMSNAE-----VIPI 383

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C  +       +     A       L CSA+ + R+ H+ SR+A NI+GL ++ ++
Sbjct: 384 ECPVCGGKT-----EEKLLKTARVLICTNLECSAKHISRITHYCSRNAMNIDGLSEKTIE 438

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F         ++   DI+ L++ ++    +I NI GFG  S  N+ ++I K ++  LE 
Sbjct: 439 KFVN----LGYLKDIDDIYNLEQYKE----EIINIDGFGLKSYNNMIEAIEKSKHCKLEN 490

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGI++VG   A+ L K + S               N +   +  +  +GD++   I
Sbjct: 491 FIFALGIQNVGLGTAKLLVKKFKSIDKIM----------NCNLEEIYSIDGIGDVVGNEI 540

Query: 613 VEFYQ-NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670
            +++  N  +I  V  LLK +       ++N S++++ K  V TG +   + R++ +  V
Sbjct: 541 YKYFVINQDSINLVSKLLKYIDF--EEVKENNSNKLQGKTFVITGDVHIFKNRNEIKAKV 598

Query: 671 TQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++G  V+  +S+KT+ +I    ++  SK +KA+ L + I+ EE+FL +++
Sbjct: 599 EEMGGKVTGSVSKKTNYLINNDSESASSKNKKAKDLNIPIITEEEFLGMIK 649


>gi|168187649|ref|ZP_02622284.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund]
 gi|169294495|gb|EDS76628.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund]
          Length = 649

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 189/711 (26%), Positives = 336/711 (47%), Gaps = 67/711 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   + +  L +E++   D YY   K  ++D E+D        +             N 
Sbjct: 1   MEDKTQRVKELIKELNEASDKYYNSDKTTMIDKEWDDKFDELKQLEQE----TEVILSNS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+G E+   L KV H+IP  SL K  +I+DL+KFI             +    +  K
Sbjct: 57  PTQKVGYEVKSKLDKVVHNIPLKSLGKTKSIDDLQKFI------------GNNEILIMDK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG    + Y+ G+ +  + RG+G  GED++  ++    IP  L ++    +++ GE  I
Sbjct: 105 GDGLTCELIYDNGQLLQGSTRGNGEIGEDITHNVKTFKNIP--LQIDFKGYLKLSGESVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
              DF  +N ++       Y+N RN  +G +R+L+      R + F+   L +  E   K
Sbjct: 163 LDEDFELINAKLDE--EDKYSNSRNLVAGSVRQLDSKICDKRNVRFYAFSLLECGEAEFK 220

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            + E L+ +  LGF     ++  +    +    ++M+       + IDGLV+  +     
Sbjct: 221 TKEEQLEFLSRLGFETIEYIKY-DNSEELEQVISKMQKSAYEKGFPIDGLVFAYNNIEYA 279

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG+    P   I++KF +++  T+ +  + Q+ RTG++ PVAR EPV I G+++  AT
Sbjct: 280 NSLGDTLHHPLHSIAYKFYDEEYETKYIATEWQVSRTGMINPVARFEPVEIEGSVVERAT 339

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DY + L            +  GD + V +A +VIPKV+                P+
Sbjct: 340 LHNLDYFEDL-----------KLGQGDTIKVIKANQVIPKVMSNDTMSNTE-----IIPT 383

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C  +       K  K      C     CSA+ + R+ H+ SR+A NI+GL ++ ++
Sbjct: 384 ECPVCGGKT----EEKLLKTARVLICINP-ECSAKHISRIVHYCSRNAMNIDGLSEKTIE 438

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F         ++   DI+ L++ ++    +I NI GFG  S  N+ ++I K ++  LE 
Sbjct: 439 KFVN----LGYLKDIDDIYKLEQYKE----EIINIDGFGTKSYNNMIEAIEKSKHCKLEN 490

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LG+  VG   A+ L K + S +             N +   +  +  +GD++   I
Sbjct: 491 FIFALGVPSVGLGTAKLLVKKFKSIEKVM----------NCNLEEIYSIDGIGDVVGNEI 540

Query: 613 VEFYQ-NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670
             ++  N  +I  V  LLK         +++ S+++E K  V TG +   + R++ +  +
Sbjct: 541 YNYFIINKDSINLVNKLLK--FIDFEEVKESSSNKLEGKTFVITGDVHVFKNRNEVKAKI 598

Query: 671 TQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++G  V+  +S+KTD +I    ++  SK +KA+ L + I+ EE+F+ +++
Sbjct: 599 EEMGGKVTGSVSKKTDYLINNDVESTSSKNQKAKDLNIPIITEEEFVEMIK 649


>gi|119476275|ref|ZP_01616626.1| DNA ligase [marine gamma proteobacterium HTCC2143]
 gi|119450139|gb|EAW31374.1| DNA ligase [marine gamma proteobacterium HTCC2143]
          Length = 781

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 210/632 (33%), Positives = 332/632 (52%), Gaps = 46/632 (7%)

Query: 12  LSI-EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ++     ++++  L   ++ H+  Y+   +P + D+EYD L R+   +   FP    +  
Sbjct: 1   MTEISDPKQQIEELRSTVNLHNYRYHALDEPTVPDAEYDRLIRQLQVLEAKFPQFITN-- 58

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++G +      +V H  P LSL+ ++N ++L  F  R+     K       +  
Sbjct: 59  -DSPTQRVGAKPLAGFNQVQHEAPMLSLDNVFNAQELSDFDHRVKERLGK--GVKFSYCC 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189
           EPK+DG  +++ Y  GK V  A RGDG++GED++  +R IPTIP  L     P ++EVRG
Sbjct: 116 EPKLDGAAVSLLYRDGKLVRGATRGDGNTGEDITHNVRTIPTIPLALIGEGYPRLLEVRG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTS 247
           E+Y+ +  F  LN    A   K + NPRNAA+G LR L+      R L    + +G    
Sbjct: 176 EIYMPRAGFDMLNKRARANDEKLFVNPRNAAAGSLRMLDAKITAERPLEMCCYSVGVMEG 235

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              A     +L +++  GF +NN +R  +   G + Y++ +   R  LPYDIDG+VYKVD
Sbjct: 236 GDLAPNHSGILAQLQGWGFRINNEMRVVDDVEGCLKYHDYLLRRRPDLPYDIDGIVYKVD 295

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             S Q+ LG  A+ PRW I+HKF  ++  T LLD+D Q+GRTG +TPVARL PV +GG  
Sbjct: 296 TISQQQSLGFTAKGPRWAIAHKFPAEEEITTLLDVDFQVGRTGAVTPVARLAPVFVGGVT 355

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN D I+ L            I + D V+V+RAG+VIP++  +++  R  DA  
Sbjct: 356 VSNATLHNRDEIERL-----------GIMINDAVVVRRAGDVIPQIAKVVLERRGSDAIK 404

Query: 428 FSFPSFCPICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
            +FP +CP+C S       V    + +   +  A+RC G L C AQ  + + HF SR A 
Sbjct: 405 IAFPDYCPVCGSHVERVKIVTHSKSGRREGVGVAYRCVGRLVCRAQLSQAIIHFASRKAL 464

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +I+GLG++ ++     E     ++ PAD++ LQ       + +  + GF ++S  NL  +
Sbjct: 465 DIDGLGEKIVEQLVIEER----LKSPADLYRLQ------VSDLAALEGFAELSAKNLVSA 514

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I  RR + L + +F+LGI  VG E A+ LA+ + S +                   LI++
Sbjct: 515 IAARRAVPLHKLVFALGIPDVGEETAKVLARVFGSLERIRVA----------KPELLIQL 564

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           P +G  +A  I EF+ +  N   ++ L+    
Sbjct: 565 PDIGREVAGEITEFFADNHNALVLDDLVSVGV 596



 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 14/175 (8%)

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + I S  I ++G   A  +A ++ +                     L  V  +    A  
Sbjct: 616 QLIASFNISNIGPTSAARVAAHFGTMAALMAA----------SIDDLAMVEKLSVKAASG 665

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIG----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           + +++Q  +N    E L +++            +  +  +     V TGTL+ + R  A+
Sbjct: 666 LFDYFQCTQNRQYAEQLEQQLLDFKMHWNCEKGQTENLPLSGMTYVVTGTLESMGRDLAK 725

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + +  LGA V+  +S+ T  ++ G   GSKL KA+QLGV +M+E  FL LL +++
Sbjct: 726 QKLESLGAKVAGSVSKNTHCVVAGSAAGSKLVKAEQLGVTVMDEAMFLALLAEFD 780


>gi|170746461|ref|YP_001752721.1| DNA ligase, NAD-dependent [Methylobacterium radiotolerans JCM 2831]
 gi|254781368|sp|B1M575|DNLJ_METRJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|170652983|gb|ACB22038.1| DNA ligase, NAD-dependent [Methylobacterium radiotolerans JCM 2831]
          Length = 810

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 257/635 (40%), Positives = 369/635 (58%), Gaps = 34/635 (5%)

Query: 1   MKKRQLIPIE-ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59
           M   +  P++  L+ E+AR E + L   I   D  YYQ   P I D+EYD L+RR + I 
Sbjct: 1   MAATKSEPLDLDLTAEEARAEYARLSDAILEADRLYYQEDAPEISDAEYDRLRRRLEDIE 60

Query: 60  HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
             FPDLA +         +G + +    KV H++P LSL   ++  ++ +F+ R+ RF  
Sbjct: 61  ARFPDLAGTGAA---STSVGAKPSEKFAKVRHAVPMLSLGNAFDDAEVAEFVARVRRFLG 117

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
             DD  + FT EPKIDG  +++RY  G+   AA RGDG  GE+V+A  R +  IP VL+ 
Sbjct: 118 WSDDTPLAFTAEPKIDGLSLSLRYVNGRLDTAATRGDGEVGENVTANARTVQDIPAVLAG 177

Query: 180 N-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237
              PEI EVRGEVY+S  DF A+N    A G+  +ANPRNAA+G LR+L+P    +R L 
Sbjct: 178 AGWPEICEVRGEVYLSHADFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLR 237

Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           FF +  G+ S   A+ Q  +L++    G PVN           ++++Y  +++ R+ L Y
Sbjct: 238 FFAYAWGELSAPIAETQTGVLEQFATWGLPVNPRTETFTDTAAMLAHYRRIEADRAGLGY 297

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           DIDG+VYKVD+ +LQK+LG  +RSPRW ++HKFA ++A+T + DI I +GRTG L P+A+
Sbjct: 298 DIDGVVYKVDDLALQKRLGFVSRSPRWALAHKFAAQEATTVVEDIVINVGRTGSLNPLAK 357

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           L PV +GG +++NATLHNE Y+KG+ A G+ +R GRDIRVGD V V RAG+VIPKV+D+ 
Sbjct: 358 LRPVTVGGVVVSNATLHNEGYVKGVGADGEPIRDGRDIRVGDTVTVVRAGDVIPKVMDVD 417

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           + +R  D++P++FP  CP C SR VR +NP+TG+  A  RCTGGL C AQ +ER+KHFVS
Sbjct: 418 LTKRPADSRPYAFPESCPACGSRAVRAINPRTGRPDAVRRCTGGLICPAQGVERMKHFVS 477

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL--------- 528
           R+ F+IEG G+  ++  F+    A  +R PAD+F L   +  +                 
Sbjct: 478 RNGFDIEGFGETYIEVLFE----AGLVRQPADLFRLDFEELKAAIVARREALSAERRAES 533

Query: 529 --------------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
                            D ++ NL  ++  RR + + R +F+LGI  +G   A++LAK +
Sbjct: 534 GTAEPPKKAAKKKGDEDDKAIKNLLAAVEARRAVPMNRLLFALGIPQIGEATAKALAKRF 593

Query: 575 LSYQNFAQEINNIIAHN-NDDWLSLIRVPLVGDII 608
                    I    A     DW+ L  VP VG   
Sbjct: 594 ADMPTLIAAIREAAAAQPGPDWVELTAVPRVGGTT 628



 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 2/154 (1%)

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-VGDIIAQAIVEFYQNPRNICAVE 626
            +L  +Y         I    A    D   +      +G +   A++ F+  P N  AV 
Sbjct: 657 ENLLAHYGDVDAVRAAIAQAAAQRPGDAYRVFADDGEIGPVATDALLLFFSEPHNADAVT 716

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           ALL  V+           S    K +VFTG L+K+ R++A+    +LGA VS  +S KTD
Sbjct: 717 ALLDAVAVQPMERAAAA-STFAGKTVVFTGALEKMTRNEAKAVAERLGAKVSGSVSAKTD 775

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +++ G   GSKL+ AQ+ GV++++E+ +L ++ Q
Sbjct: 776 LVVAGPGAGSKLKDAQKHGVRVVSEDDWLAMVAQ 809


>gi|302344112|ref|YP_003808641.1| DNA ligase, NAD-dependent [Desulfarculus baarsii DSM 2075]
 gi|301640725|gb|ADK86047.1| DNA ligase, NAD-dependent [Desulfarculus baarsii DSM 2075]
          Length = 691

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 228/715 (31%), Positives = 358/715 (50%), Gaps = 38/715 (5%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E  S+  A + ++ L +E+      YY   +  + D+ YD      + +   FP L  +
Sbjct: 1   MEKPSLSAAARRVAQLSEELRRWSRVYYNEGRQEVADALYDQRFAELEELERLFPMLRLA 60

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P  ++G     S   V+H  P LSLE   +  D    +  + R            
Sbjct: 61  ---DSPTRRVGAPPQSSFAAVSHFRPMLSLE---SRGDFGL-VGDLLRRLADAGQPEAAI 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             +PKIDG  I + YE      A+ RGDG  G+DV+   R +  IP  L    P ++ VR
Sbjct: 114 LAQPKIDGLSIELVYENNLLRTASTRGDGVVGDDVTTNARVVGGIPHALEGLAPALVVVR 173

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247
           GEVY+ +  FL LN +++A G+  +ANPRNAA+G LR+ +      R L FFV  L    
Sbjct: 174 GEVYMDRAGFLDLNRQLVAQGQDGFANPRNAAAGSLRQQDPFVTAGRPLRFFVFELVNAD 233

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYN-EMKSIRSTLPYDIDGLVYKV 306
           ++      + L+ +   GFP+ +   +       V   + +  + R+ LP+DIDG+  KV
Sbjct: 234 DLGLASDSDALRLLGQWGFPLTDDHLRLGRGAEFVRQAHADYLARRAELPFDIDGVALKV 293

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +L+  LG+R+R+PRW ++ KF  +Q  T +LD+ +Q+GRTG LTPVA LEPV+IGG 
Sbjct: 294 DDLALRGVLGQRSRTPRWAVAWKFPPRQEVTPVLDVVVQVGRTGKLTPVALLEPVDIGGV 353

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-A 425
            +  ATLHN + +  L           D+RVGD   ++RAG+VIP+V  +          
Sbjct: 354 TVARATLHNFEEVARL-----------DLRVGDLARMERAGDVIPRVAGVARQAPPERRG 402

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                P+ CP+C + +VRD           HRC   L C AQQ   L+HF SR A ++EG
Sbjct: 403 PAIVAPTHCPVCGATIVRDEG------GVNHRCPNSLGCPAQQKAALRHFASRAAMDVEG 456

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + ++  ++       +     ++ L  R+     ++  + G+G++S  NL  +I   
Sbjct: 457 LGGKNVEALWER----GFLSDLPSLYALAARRD----ELAGLRGWGELSADNLLRAIAAT 508

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--AHNNDDWLSLIRVPL 603
           +  +L+RFIF+LGI  VG E A+ LA+   S +      +     A +    L L  +  
Sbjct: 509 KGAALDRFIFALGIPGVGQETAKLLAQRLGSLEALVAAADGWRKPAKDRPAGLYLDDIAG 568

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQ 662
           VG   A+ I  F+Q P+       L + V P+          + +  K +VFTG L+ + 
Sbjct: 569 VGPKTAEDIQRFFQTPQTRQTALKLAELVGPTWAESPTPRAGAPLAGKTIVFTGRLEGLS 628

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           R +A+      GA V+  +SR TD +++G+NPG KL +A++LGV  M   +FL L
Sbjct: 629 RPQAKALAEAAGAKVAGQVSRSTDWLVLGENPGGKLGEARKLGVPTMTLAEFLTL 683


>gi|167745884|ref|ZP_02418011.1| hypothetical protein ANACAC_00578 [Anaerostipes caccae DSM 14662]
 gi|167654748|gb|EDR98877.1| hypothetical protein ANACAC_00578 [Anaerostipes caccae DSM 14662]
          Length = 651

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 181/711 (25%), Positives = 318/711 (44%), Gaps = 65/711 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L   +S     YYQ ++ ++ + EYD L      +         +   + 
Sbjct: 1   MKDKFDRMKELIHILSEASKAYYQENRELMSNFEYDKLYDELLELEKE----TDTVLADS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E+  SL K  HS P LSL+K   +  L +++                     K
Sbjct: 57  PSIHVGYELLTSLEKEPHSSPMLSLDKTKEVGQLEEWLGDQKGLL------------SWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + Y++G  + A  RG+G  GE V+   +    +P    +     + +RGE  I
Sbjct: 105 LDGLTIVLTYQEGVLLKAVTRGNGEVGEVVTNNAKVFVNLP--KKIAYKGTLVIRGEAVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
             +DF  +N+EM  +    Y NPRN  SG +R+LN      R + F+   +    ++   
Sbjct: 163 HYSDFRRMNEEMEDL-DSRYKNPRNLCSGSVRQLNNEVTAKRNVRFYGFSVADVPDVDFH 221

Query: 253 GQ-YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               E     R LGF + + V                           DGLV   D+ + 
Sbjct: 222 NSVEEKFIWARSLGFDIVDYVAVTKDTVA--EEVERFSQAIENNDQPSDGLVLIYDDIAY 279

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            + LG  A+ PR  I+ K+A++ A T L +I+    RTG++ PVA  +PV + G+ ++ A
Sbjct: 280 GRSLGTTAKFPRDSIAFKWADEIAETTLKEIEWSPSRTGLINPVAIFDPVELEGSTVSRA 339

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN   ++ L+           + VGD++ V +A  +IP++       R  DA     P
Sbjct: 340 SLHNISVMEELE-----------LGVGDQISVYKANMIIPQL--AENQTRSGDAP---IP 383

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C  +          +            CSA++++   HFVSRDA N++GL +  L
Sbjct: 384 DTCPACGGKT-----EIEEENGIRTLVCPNQFCSAKKIKLFSHFVSRDAMNVDGLSEASL 438

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                       +    D+FTL+  ++    +I  + GFG+ S  NL D+I + + ++L 
Sbjct: 439 HKMMDK----GLLNELYDLFTLKEHKE----EIIEMEGFGEKSFHNLADAIERAKKVTLP 490

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           +F++SLGI +VG   A+ + +Y+          +++ A  N +      +  +G II +A
Sbjct: 491 KFLYSLGIANVGLSNAKLICRYFE---------DDLDAIRNAEAEDFTAIDGIGPIIGEA 541

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYV 670
           +  +++   N   V+ LL+ V     R  +     ++ K  V TG+L+    R + QE +
Sbjct: 542 VSGYFRLENNKQTVDRLLQYVEIE-KRQTEETEKLLDGKTFVITGSLEHYENRKQLQEQI 600

Query: 671 TQLGAVVSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             LG   +  +++KTD +I  +     SK +KA +L + I+ EE+F+ +++
Sbjct: 601 EILGGKATGSVTKKTDYLINNNKNSASSKNKKAMELSIPIITEEEFMDMIK 651


>gi|331270899|ref|YP_004385610.1| putative NAD-dependent DNA ligase [Clostridium botulinum BKT015925]
 gi|329127291|gb|AEB77235.1| putative NAD-dependent DNA ligase [Clostridium botulinum BKT015925]
          Length = 649

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 185/711 (26%), Positives = 331/711 (46%), Gaps = 67/711 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   + +  L +E++   D YY   + ++ D E+D    +   +             N 
Sbjct: 1   MEDKTQRVKELIKELNQASDKYYNSDETVMTDKEWDDKFDKLKQLEQD----TGIILSNS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+G E+   L KV H+IP  SL K  +I DL KFI             S    +  K
Sbjct: 57  PTQKVGYEVKSKLDKVVHNIPLKSLGKTKSIGDLNKFI------------GSNEVIIMDK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG    + YE G+ +  + RG+G  GED++  ++    IP  L ++    +++ GE  I
Sbjct: 105 GDGLTCELIYENGQLLQGSTRGNGEIGEDITHNVKTFKNIP--LQIDFKGYLKLSGESVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252
              DF  +N ++       Y+N RN  +G +R+L+      R + F+   L +   +   
Sbjct: 163 LDEDFELINSKL--DDEDKYSNSRNLVAGSVRQLDSNICDKRNVKFYAFSLLECEGVDFI 220

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            + E L+ +  LGF     ++  N    +    ++M+       + IDGLV+  +     
Sbjct: 221 TKEEQLEFLSRLGFETIEYIKY-NNSEDLEQVISKMQKSAYEKGFPIDGLVFAYNNIEYA 279

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG+    P   I++KF +++  T+ +  + Q+ RTG++ PVAR +PV I G+++  AT
Sbjct: 280 NLLGDTLHHPLHSIAYKFYDEEYETQYITTEWQVSRTGMINPVARFKPVEIEGSVVERAT 339

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN DY + L            +  GD + V +A +VIPKV+                P+
Sbjct: 340 LHNLDYFEDL-----------KLGQGDTIKVIKANQVIPKVMSNDTMSNTE-----IIPT 383

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C  +       +     A         CSA+ + R+ H+ SR+A NI+GL ++ ++
Sbjct: 384 ECPVCGGKT-----EEKLLKTARVLICNNPECSAKHISRITHYCSRNAMNIDGLSEKTIE 438

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F         ++   DI+ L++ ++    +I NI G G  S  N+ ++I K +   LE 
Sbjct: 439 KFVN----LGYLKDIDDIYKLEQYKE----EIINIDGLGTKSYNNMIEAIEKSKYCKLEN 490

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LG+ +VG   A+ L K + S               N +   +  +  +GD++   I
Sbjct: 491 FIFALGVPNVGLGTAKLLVKQFKSIDKIM----------NCNLTEIYGIEGIGDVVGSEI 540

Query: 613 VEFYQ-NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670
             ++  N  +I  V  LLK         +++ S+++E K  V TG +   + R++ +  +
Sbjct: 541 YNYFIINTDSINLVNKLLK--FIDFEEVKESSSNKLEGKTFVITGDVHVFKNRNEVKAKI 598

Query: 671 TQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            ++G  V+  +S+KTD +I    ++  SK +KA+ L + I+ EE+F+ +++
Sbjct: 599 EEMGGKVTGSVSKKTDYLINNDVESTSSKNQKAKDLNIPIITEEEFVEMIK 649


>gi|326792059|ref|YP_004309880.1| DNA ligase, NAD-dependent [Clostridium lentocellum DSM 5427]
 gi|326542823|gb|ADZ84682.1| DNA ligase, NAD-dependent [Clostridium lentocellum DSM 5427]
          Length = 649

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 177/707 (25%), Positives = 310/707 (43%), Gaps = 62/707 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A + +  L   +      Y Q  + ++ + EYD        +                 
Sbjct: 2   KAVERMKELVDVLGKAAYAYEQEDREVMSNYEYDKFYDELKRLEEE----TGIILAGSVT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G E+  SL K+TH    LSL+K   +  L+ F+             +    L  K+D
Sbjct: 58  QKVGYEIASSLPKITHPKRMLSLDKTKEVSKLKAFL------------GNQEGLLSWKLD 105

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I   YE+G+ V A  RG+G  GE+++   +    +P  L+++  E + +RGE  I+ 
Sbjct: 106 GLTIVCIYEEGQLVSAVTRGNGSVGEEITNNAKTFKELP--LAIDYKERVVLRGEAIITY 163

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
           +DF  +N+ +     + Y NPRN  SG +R+LNP                        + 
Sbjct: 164 SDFERINEGLGEK-EEKYKNPRNLCSGSVRQLNPQITAGRNVRLYAFTLVEGGPDVATKA 222

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+ ++  GF V                         + P+  DGLV   ++      L
Sbjct: 223 EQLEWLKARGFKVVEYKHVTANNIEETVA--YFAEAIKSQPFASDGLVLTYNDREYSASL 280

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           GE A+ P+  I+ K+ ++   T+LL+++    RTG++ PVA  EPV I G  +  A++HN
Sbjct: 281 GETAKFPKDAIAFKWQDEIVETKLLEMEWNTSRTGLINPVAIFEPVEIEGTTVERASVHN 340

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
              ++ L            + +GD + V +A  +IP++ + +       +     P  CP
Sbjct: 341 LSILEEL-----------KLGIGDTIKVYKANMIIPQIAENLTQ-----SANVEIPEVCP 384

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C +  +        +  A         C AQ+L  L HF +RDA NIEGL +  ++   
Sbjct: 385 VCGAHTMIM-----KEKEAKTLICPNSNCKAQRLRALAHFTTRDAMNIEGLSEATIEKLL 439

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           +       ++    ++ L R +     ++  + G G  S   L  SINK R+++L  F++
Sbjct: 440 EK----GYLKDFTSLYHLDRYEA----EVIEMEGLGKKSFDKLIKSINKSRDVALANFVY 491

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGI  VG   A+ + K++ +          +       +  LI +  VG +IA+   E+
Sbjct: 492 ALGIAQVGLGTAKLICKHFNN---------ELDEMMKARYEQLITIDGVGPVIAKEFEEY 542

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLG 674
           +    N   +E L+KE+   +     +  S I NK  V TG +   + R + Q  +  LG
Sbjct: 543 FNLEENKAMLETLVKEIHFKLENVTISQESPILNKTFVITGDVNYFKNRKELQAKIETLG 602

Query: 675 AVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             V+  +S+ TD +I    ++  SK +KA++LG+ I+ E QFL +++
Sbjct: 603 GKVTGSVSKNTDYLINNDSESNSSKNKKAKELGIPILTEAQFLEIIE 649


>gi|308189932|ref|YP_003922863.1| DNA ligase (NAD(+)) [Mycoplasma fermentans JER]
 gi|238809881|dbj|BAH69671.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307624674|gb|ADN68979.1| DNA ligase (NAD(+)) [Mycoplasma fermentans JER]
          Length = 664

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 205/710 (28%), Positives = 349/710 (49%), Gaps = 50/710 (7%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           A++    +K++  L  +++  +  YYQ + P + D EYD   +  + +   +P       
Sbjct: 4   AMNALDIKKKIIELSNKLNQWNKEYYQDNNPSVSDFEYDKALQELEQLEKKYPQFIYV-- 61

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            N P  K+G   +    KV H  P LSL K ++  ++ K++  I +    +D   I F++
Sbjct: 62  -NSPTQKLGSFADNKFKKVVHQKPMLSLSKAYDYSEIEKYVNNIEKLVPIED---INFSI 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           EPKIDG  I++ Y  G    A  RGDGH GEDV+  I  I +IP    +N    +EVRGE
Sbjct: 118 EPKIDGLSISLHYNHGFLNQALTRGDGHEGEDVTENIYQIASIP--KIINYDAELEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEI 249
           V++ K +F  LN+ +I  G KP++NPRNAASG LR+L+PT    R L  F++ L +  + 
Sbjct: 176 VFLPKAEFQRLNENLIKAGEKPFSNPRNAASGTLRQLDPTIVKNRQLASFLYELVEPQKH 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
               Q + L+  + L  P N   +         +     +       YD DGLV K++  
Sbjct: 236 NITTQEQALEFFQKLNIPTNPYHKVVEVEELEEAISFFAEMKNKL-NYDADGLVIKLNNL 294

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +   ++G+ A+ P+  I+ K+  + A + + DI   +GRTG +T VA LEPV +   ++ 
Sbjct: 295 TYWNKMGKTAKFPKHSIAFKYEVETAISTIKDIKTTVGRTGKITYVASLEPVELNQTIVR 354

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ATLHN ++I+ L           +I + D+V + +AGE+IPKV+ ++  +       F 
Sbjct: 355 AATLHNYNFIEDL-----------NININDQVQIVKAGEIIPKVLALVKKQSKG---VFG 400

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
               CP C S +V   +          +      C    +  + HF SR + NI GLG  
Sbjct: 401 KTLECPSCGSVLVEIEDN-------VDQFCVNKNCPEMTINAIYHFASRKSLNIVGLGLI 453

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +  F+K       ++   DIF L + +     ++  +  + ++ V NL  +I K ++ +
Sbjct: 454 TVKDFYKHN----LVKSIEDIFNLHKHKD----ELLKLERYAELKVNNLLTNIGKAKDST 505

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             + +F+LGI+HVG   A+ ++K Y ++     E + +          +  +  +G  I 
Sbjct: 506 FSKVLFALGIKHVGERAAKLISKQYHNFDELICEKDELAK--------ISAINNIGPKIL 557

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            ++ E+ +N  N+  +    +    +  +     S ++ N   V TG L    R    + 
Sbjct: 558 DSLKEYLKNEENVKLLRKFDEI--FNYQKIATVASEKLINLSFVITGKLSN-SRDHYVDL 614

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V   G  VS+ +S KT  ++VG++ GSKL+KA++L + I+NEEQF  +L+
Sbjct: 615 VEANGGKVSSSVSSKTSFLLVGEDAGSKLDKAKKLNIAIINEEQFNEMLK 664


>gi|325972726|ref|YP_004248917.1| DNA ligase, NAD-dependent [Spirochaeta sp. Buddy]
 gi|324027964|gb|ADY14723.1| DNA ligase, NAD-dependent [Spirochaeta sp. Buddy]
          Length = 696

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 197/735 (26%), Positives = 341/735 (46%), Gaps = 75/735 (10%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +   E+ SL ++++ +   YY  ++P++ D EYD L  R  A+   +P L  +   + 
Sbjct: 1   MNELEHEIHSLVEQLASYQKAYYVDNRPLVSDLEYDRLFDRLVALETQYPHLKLA---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +++ +L +V H+IP LSL+K ++  ++  +I +       K    +   +E K
Sbjct: 58  PTQRVGSDLDSALVEVAHTIPVLSLDKAYSDGEMLSWIEKTE----LKIGEEVGIVIEEK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I + YE G    A  RG+G  G DV+A ++ I +IP  L L + E + VRGE+Y+
Sbjct: 114 IDGISIVLYYEDGLLKRAVTRGNGMVGNDVTANVKTIASIP--LRLPVKESLAVRGEIYL 171

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            K  F     ++ A    P+ANPRN A+G +RR+  +++ +         G   E+    
Sbjct: 172 PKETFA----KLNAQMEVPFANPRNLAAGTIRRIKSSEVAKVPLQIFVYEGFWKEVVHTD 227

Query: 254 QYEMLQKMRCLGFPVNNGVRQANT--------------------FHGIVSYYNEMKSIRS 293
             ++L  +   GF +N  +                         F  + SY  +    R+
Sbjct: 228 HLQILSTLASYGFRLNPNLGYFAKDASQARQALMDAQLSGFGGSFSDLASYIQDHTQKRA 287

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
           +L Y+IDGLV KV+  S ++ LG     PRW +++KF   QA T +  ID+Q+GRTG +T
Sbjct: 288 SLGYEIDGLVAKVNSLSGREMLGYTGHHPRWAMAYKFESPQAQTVVQAIDVQVGRTGRVT 347

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVAR+ PV + G+ I+N TLHN+DYI  L+           + +GD V + R G+VIP V
Sbjct: 348 PVARVVPVQVAGSTISNITLHNQDYINMLE-----------LGLGDTVEISRRGDVIPAV 396

Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
             +I          +  P+ CPIC S +         +   AH     ++C AQ   R++
Sbjct: 397 ERVIEKN-ESSQGIYHMPTRCPICDSTL---------ESRGAHTFCPNISCPAQIRGRIE 446

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533
            F+ ++  +I+  G +              ++   DI+ +  R+  S        GFG+ 
Sbjct: 447 FFIGKEGMDIDNFGPETAAALID----LGYLKDIDDIYRIDYRKALSDQA-----GFGEK 497

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR-SLAKYYLSYQNFAQEINNIIAHNN 592
            +  +   + K +     + + +LG+  +G + A   LA    S +            N 
Sbjct: 498 KIRLIEGGVQKSKEQPFRKVLVALGLPELGKKGAELLLANGITSMEILLD------IANR 551

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENK 650
            D   L  +  +G+ IA+  +E    P     +  L           +  + +      +
Sbjct: 552 GDVQRLTSIKQIGEKIARLYIEALCEPAMQQRIARLASLGLAMAEGEQQLQKLDDSFSGQ 611

Query: 651 KLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
               TG+ +    R  A + V + G    + ++ KT  ++ G+  GSKLE A+ L V+++
Sbjct: 612 VWCVTGSFEHFNPRSLAMDEVVKRGGRTVSSVTSKTTHLLAGEGGGSKLETARSLKVQVV 671

Query: 710 NEEQFLFLL--QQYN 722
           +E+ FL LL  +Q+N
Sbjct: 672 DEQTFLTLLKSKQHN 686


>gi|330837729|ref|YP_004412370.1| DNA ligase [Spirochaeta coccoides DSM 17374]
 gi|329749632|gb|AEC02988.1| DNA ligase [Spirochaeta coccoides DSM 17374]
          Length = 716

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 207/732 (28%), Positives = 333/732 (45%), Gaps = 71/732 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + E A + ++ L + +      YY   +P + D EYD L     A+  A PD+  +   +
Sbjct: 3   TQETAVRRMAELSRILLDAQHEYYVLGRPSMSDKEYDTLMDELAALEAAHPDVKEA---D 59

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  ++G ++     +V HSIP LSL+K ++ E +  ++ +       K D  + F +E 
Sbjct: 60  SPTQRVGSDLTSDFPEVRHSIPVLSLDKAYSAEAIVSWMNK----AGLKADTGLSFIVEE 115

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  + + YEKG  V A  RG+G  G DV+A IR I  +P  LS  +   I VRGEVY
Sbjct: 116 KIDGVSMVLYYEKGILVRAVTRGNGTVGNDVTANIRTIAAVPLRLSEPL--DIAVRGEVY 173

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVHGLGKTSEIF 250
           + K  F      +      PYANPRN A+G +RR+  ++  R     F            
Sbjct: 174 LPKESF----SVLNKTMEIPYANPRNLAAGTIRRIKSSETARVPLTIFVYEAYFAGDATL 229

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANT--------------------FHGIVSYYNEMKS 290
                E+L  +  LGF VN  +    +                    F  +  Y + +  
Sbjct: 230 YPNHVELLAALVRLGFRVNPHLGVFASGRQEAEALLSASGVQGFSGAFDDLAGYISGVTR 289

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
            R  LPY+IDGLV KV++ +L+   G     PRW I++KF    A T + DID+Q+GRTG
Sbjct: 290 ERGNLPYEIDGLVVKVNDLALRDVFGYTGHHPRWAIAYKFESPAAQTVVQDIDVQVGRTG 349

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TP+AR+  V IGG++++N TLHN+DYI  L+           + +GD V V + G+VI
Sbjct: 350 RITPMARVRSVPIGGSVVSNVTLHNQDYIDLLE-----------LAIGDTVEVSKRGDVI 398

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P V  ++      +   +  P+ CP C S +V           A   C     C AQ   
Sbjct: 399 PAVERVVEKNEEGNT-TWRIPAICPSCGSTLVIR--------GAHTFCPNASGCPAQVGG 449

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
           R++ FV +D  +I   G + +            +    DI+TL  R+           GF
Sbjct: 450 RIQFFVGKDGMDIANFGPETVTVLRNINA----LSDIPDIYTLDYRRVLDGQ-----PGF 500

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
           G   ++ +   +   RN      + +LG+   G +    L     S ++  Q ++ +  H
Sbjct: 501 GKKKISLIVTGVEDSRNRPFRVVLSALGLPDFGRKAVDQLLDA-GSIRSMEQLLHIVDTH 559

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIE 648
              D  +L  +P +G+ +A  ++E    P     + AL +          +  +V     
Sbjct: 560 ---DMDTLTSIPQIGEKMAMTLIESLSAPEMRARIHALGEAGLSFEEEASQVSDVPQIFA 616

Query: 649 NKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
            +    TG+ +    R KA   V + G  V++ ++ KT  ++ G   GSKL +AQ+ G +
Sbjct: 617 GQTWCVTGSFEHFSPREKAMVEVKKRGGRVTSSVTGKTTHLLAGGGAGSKLSQAQKAGAR 676

Query: 708 IMNEEQFLFLLQ 719
           I++E++FL +L 
Sbjct: 677 IVSEDEFLGMLD 688


>gi|319777211|ref|YP_004136862.1| DNA ligase [Mycoplasma fermentans M64]
 gi|318038286|gb|ADV34485.1| DNA ligase [Mycoplasma fermentans M64]
          Length = 660

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 204/709 (28%), Positives = 348/709 (49%), Gaps = 50/709 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++    +K++  L  +++  +  YYQ + P + D EYD   +  + +   +P        
Sbjct: 1   MNALDIKKKIIELSNKLNQWNKEYYQDNNPSVSDFEYDKALQELEQLEKKYPQFIYV--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  K+G   +    KV H  P LSL K ++  ++ K++  I +    +D   I F++E
Sbjct: 58  NSPTQKLGSFADNKFKKVVHQKPMLSLSKAYDYSEIEKYVNNIEKLVPIED---INFSIE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I++ Y  G    A  RGDGH GEDV+  I  I +IP    +N    +EVRGEV
Sbjct: 115 PKIDGLSISLHYNHGFLNQALTRGDGHEGEDVTENIYQIASIP--KIINYDAELEVRGEV 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           ++ K +F  LN+ +I  G KP++NPRNAASG LR+L+PT    R L  F++ L +  +  
Sbjct: 173 FLPKAEFQRLNENLIKAGEKPFSNPRNAASGTLRQLDPTIVKNRQLASFLYELVEPQKHN 232

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q + L+  + L  P N   +         +     +       YD DGLV K++  +
Sbjct: 233 ITTQEQALEFFQKLNIPTNPYHKVVEVEELEEAISFFAEMKNKL-NYDADGLVIKLNNLT 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
              ++G+ A+ P+  I+ K+  + A + + DI   +GRTG +T VA LEPV +   ++  
Sbjct: 292 YWNKMGKTAKFPKHSIAFKYEVETAISTIKDIKTTVGRTGKITYVASLEPVELNQTIVRA 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN ++I+ L           +I + D+V + +AGE+IPKV+ ++  +       F  
Sbjct: 352 ATLHNYNFIEDL-----------NININDQVQIVKAGEIIPKVLALVKKQSKG---VFGK 397

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
              CP C S +V   +          +      C    +  + HF SR + NI GLG   
Sbjct: 398 TLECPSCGSVLVEIEDN-------VDQFCVNKNCPEMTINAIYHFASRKSLNIVGLGLIT 450

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +  F+K       ++   DIF L + +     ++  +  + ++ V NL  +I K ++ + 
Sbjct: 451 VKDFYKHN----LVKSIEDIFNLHKHKD----ELLKLERYAELKVNNLLTNIGKAKDSTF 502

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + +F+LGI+HVG   A+ ++K Y ++     E + +          +  +  +G  I  
Sbjct: 503 SKVLFALGIKHVGERAAKLISKQYHNFDELICEKDELAK--------ISAINNIGPKILD 554

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++ E+ +N  N+  +    +    +  +     S ++ N   V TG L    R    + V
Sbjct: 555 SLKEYLKNEENVKLLRKFDEI--FNYQKIATVASEKLINLSFVITGKLSN-SRDHYVDLV 611

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G  VS+ +S KT  ++VG++ GSKL+KA++L + I+NEEQF  +L+
Sbjct: 612 EANGGKVSSSVSSKTSFLLVGEDAGSKLDKAKKLNIAIINEEQFNEMLK 660


>gi|255316598|ref|ZP_05358181.1| DNA ligase, NAD-dependent [Clostridium difficile QCD-76w55]
          Length = 663

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 202/713 (28%), Positives = 335/713 (46%), Gaps = 58/713 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           + +  +++  L +E+  HD  Y     PII D+EYD L  +   +   +P+     D N 
Sbjct: 1   MNKVEEKIRDLREEVIKHDLAY-AKGDPIISDTEYDKLYLKLVGLEELYPEY---SDENS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  +I       L KV H+IP LS +KI   ++L KFI ++               +E K
Sbjct: 57  PTKRIIDIKVEGLKKVEHTIPMLSQKKINTPDELDKFIRQMNDEL----------LVEDK 106

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +  +Y  G       RGDG  G+D++  +   P IP   ++   + +E+R E  I
Sbjct: 107 LDGLTVIAKYNNGVLYEGITRGDGKIGDDITHIVLNTPNIP--KTIPFNDYLEIRLEGII 164

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAK 252
              DF  +N  +    +  Y + RN ASG +R LN        L      L K   I  +
Sbjct: 165 PNEDFEMVNSILEEEDK--YKSSRNLASGTVRSLNGCVAKERGLKLIAFELVKADNIIFE 222

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVS----YYNEMKSIRSTLPYDIDGLVYKVDE 308
             YE L+ ++ LGF V N          I+      ++  + +R  L Y +DGLV K + 
Sbjct: 223 KDYERLEFLKTLGFDVVNYTLFKKNEEDILKLKDYIFSYNQEVRPFLSYKVDGLVIKANS 282

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             L+  LG  ++ P+W  + KF  ++A T+L D  I++G++G LTPVA  EPV I G  I
Sbjct: 283 LELRDSLGNTSKYPKWSSAFKFENEEAITKLKDCIIEVGKSGQLTPVALFEPVQIDGITI 342

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           + ATL N   +K            +DI++GD V+V RA +VIPK+   I  +R  + +  
Sbjct: 343 SKATLSNFKNVK-----------DKDIKIGDMVVVARANDVIPKIEHSIKEDRTGEEKEI 391

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P FCP+C   +V++           H       C AQ   ++ HFVS+ + +I+GLG+
Sbjct: 392 EIPKFCPVCNEPIVKEN---------VHYFCVNDDCPAQIEGKIIHFVSKKSLDIDGLGE 442

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + +  F  +      I    DIF      +     +  +  + D  V+NL ++I   +  
Sbjct: 443 ESIKLFLDN----GLISSIIDIF----YLKDKKDDLLKLDKYADKKVSNLLENIEASKQA 494

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           SL + +  L I+ +G   ++ LA  ++S +N      NI  +  +   S++ +   G+ +
Sbjct: 495 SLSKILHGLSIKLIGGRASKELANKFISMKNIL----NISKNEEEFKQSILSINNFGEEM 550

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKA 666
           +  +V F+++ RNI  +  L++       +  K     + +  K +V TG      R + 
Sbjct: 551 SNNLVLFFKDERNIELINKLMEVGFKMEEQIVKVNEEENMLTGKTVVITGKFTDFTREEL 610

Query: 667 QEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            E +    G   S  +S+KTD +I GD  GSK  KA +LGVK++ E++ L ++
Sbjct: 611 TEKIENEFGGKCSKSVSKKTDFLIYGDKAGSKYNKALELGVKLITEKELLDII 663


>gi|261401085|ref|ZP_05987210.1| DNA ligase, NAD-dependent [Neisseria lactamica ATCC 23970]
 gi|269208977|gb|EEZ75432.1| DNA ligase, NAD-dependent [Neisseria lactamica ATCC 23970]
          Length = 827

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 236/868 (27%), Positives = 373/868 (42%), Gaps = 200/868 (23%)

Query: 8   PIEALS-IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           P E LS +    + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L 
Sbjct: 2   PSENLSAMNPTAQRIHELTDLLNRYAYEYYTLDAPSVPDAEYDRLFRELEALELNHPELK 61

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRF 117
               P+ P  ++GGE      +V H +P LSL   ++ +         ++  F  R+   
Sbjct: 62  L---PDSPTQRVGGEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRNG 118

Query: 118 WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177
                     + +EPK DG  I++ Y  G  V AA RGDG +GEDV+  ++ +  IP  L
Sbjct: 119 LN---GEQPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLRL 175

Query: 178 SLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRY 235
                PE+IEVRGEV + K DF ALN       +KP+ANPRNAA+G LR+L+      R 
Sbjct: 176 HGENTPELIEVRGEVLMLKADFAALNKRQADNNQKPFANPRNAAAGSLRQLDSRITAQRK 235

Query: 236 LNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           L+FF + + +      A+   + L   + LGF + +G          V  + E    +  
Sbjct: 236 LHFFPYSIARQQGGFAAEEHIQELAYFQKLGFSLPDGNFGCFKNIDEVLAFYEQMQQKRP 295

Query: 295 L-PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
             PY+IDG+V KV+  + Q++LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +T
Sbjct: 296 ELPYEIDGMVVKVNSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVT 355

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVARL+PV +GG  +TNATLHN+D +             +D+R+GD V+V+RAG+VIP+V
Sbjct: 356 PVARLQPVFVGGVTVTNATLHNQDEVSR-----------KDVRIGDTVVVRRAGDVIPEV 404

Query: 414 VDIIVNERHPDA--------------------------------QPFSFPSFCPICQSRV 441
           V +I   R                                    +P+  P+ CPIC+S +
Sbjct: 405 VRVIFERRPMRETAVAVSDSIGHRQDDLFAETPSANQTRSVPLHKPYRLPTHCPICRSEI 464

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            R+         A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++     +   
Sbjct: 465 EREEGE------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD--- 515

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENI---------------------LGFGDVSVTNLYD 540
             +R  AD++ L         +  +                               N+  
Sbjct: 516 -LVRHFADLYRLDIPTLQKMKEAADKTVAESDQMPSEGSSVGASGKHKKPPVKWAENILA 574

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
            I   +   L RF+F+LGIRHVG   A++LA+ + S +   +    ++A           
Sbjct: 575 GIESGKTPELARFLFALGIRHVGERTAKTLAQAFGSLERVRRAPEPVLAC---------- 624

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS--------------------------P 634
           +P +G ++A++I  F+        ++ LL                               
Sbjct: 625 LPDIGTVVARSIAHFFAQAEQQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGF 684

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQ---------RHKAQ--EYVTQLGAVV------ 677
            I  ++     E+  +     G LQ  +         R +AQ    +  L          
Sbjct: 685 KISENKAQALWELAGQS--IEG-LQTDKALPTDWQAWRSEAQNAALLENL--KTFFAQMP 739

Query: 678 --------SAILSR----KTDIIIVG--------------DNPGSK-------------- 697
                   S  +++    KT  ++ G              +  G K              
Sbjct: 740 SEDEAAQRSDGINKAVAGKT-FVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVA 798

Query: 698 -------LEKAQQLGVKIMNEEQFLFLL 718
                  LEKA  LGV +++E + L LL
Sbjct: 799 GEAAGSKLEKANALGVSVLSEAELLTLL 826


>gi|325661475|ref|ZP_08150101.1| DNA ligase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325472424|gb|EGC75636.1| DNA ligase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 660

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 187/709 (26%), Positives = 317/709 (44%), Gaps = 62/709 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L ++++ + + YY  S+ II D EYD L    + + +           N P   +
Sbjct: 5   ERIKELTKKLNEYRNAYYNESESIISDYEYDKLYDELEKLENE----TGLSFANSPTKTV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G E+   L KV H+ P LSL+K  +++DLRKF             +     L  K+DG  
Sbjct: 61  GFEVKSELEKVKHTHPMLSLDKTKSVDDLRKFA------------SDKDCILSLKMDGLT 108

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
             + YE G  V A  RG+G  GE ++        IP  L++      E+ GE  I+ +DF
Sbjct: 109 CLLTYENGVLVQAETRGNGDVGEVITHNANVFENIP--LTIEYKGHFEIEGEAIIAYDDF 166

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVH----GLGKTSEIFAKG 253
             +N+ +     K Y NPRN  SG +R+L+      R++ F        + +     +  
Sbjct: 167 KKINESLPE--DKKYKNPRNLVSGSVRQLDNKIAAQRHIKFIAWKVPTEVPEGICSNSFL 224

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
              M  K               +    +      +K+      Y IDGLV   ++    +
Sbjct: 225 HRLMYTKDLGFEIVPLFTYSGKSDKENLPDMIESLKTKAHDYGYPIDGLVMTYNDIQYGE 284

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG     PR  I++KF +++  T L +I+  +G++G LTP A  EPV I G ++  A+L
Sbjct: 285 SLGLTGHHPRHSIAYKFYDEEFETTLKNIEWTMGKSGSLTPTAVFEPVEIDGTMVERASL 344

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN    K L+ S            GD + V +A ++IP+V D +    +        PS 
Sbjct: 345 HNMSIFKDLELSH-----------GDTITVFKANQIIPQVSDNLDRTLN---NLCIPPST 390

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CPIC  +     +  T        C+    C  + L +L  FVSR+  NI+GL ++ L  
Sbjct: 391 CPICGGKTEIIKDNDTE----VLMCSNS-NCKGKLLGKLSAFVSRNKMNIDGLSEETLSK 445

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F         +   +DI+ L+         + N+ GFG  S+  L DSI K R++ L RF
Sbjct: 446 FIAR----GWLTCFSDIYKLKDYYIH----MINMSGFGRKSIDKLLDSIEKSRSVELNRF 497

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I +L I  VG   A+ ++K+     +F   +  +I   N        +  +G+  +Q I 
Sbjct: 498 IAALSIPGVGDSTAKDISKHCE--YDFDTFVMRLIDKYNWSI-----IDGIGEKTSQQIN 550

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQ 672
           E+  +  N      LL+ + P       +  + +  K  V TG + + + R + Q+++  
Sbjct: 551 EWIDDSSNREDFRKLLQTIIPVKPNEGNSTDNTLSGKNFVITGDVTQFKNRKELQKFIES 610

Query: 673 LGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G  V+  ++ KT+ +I    ++  SK +KA++LG+ I++E++FL ++ 
Sbjct: 611 KGGKVTGSVTSKTNWLINNDVESTSSKNKKARELGIPIISEKEFLEMVN 659


>gi|295688860|ref|YP_003592553.1| DNA ligase, NAD-dependent [Caulobacter segnis ATCC 21756]
 gi|295430763|gb|ADG09935.1| DNA ligase, NAD-dependent [Caulobacter segnis ATCC 21756]
          Length = 783

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 249/614 (40%), Positives = 353/614 (57%), Gaps = 24/614 (3%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           LIP+  L+  QA +EL  L  E++ HD  Y+Q   P I D++YDALKRR   I   FP L
Sbjct: 3   LIPVADLTEAQAVEELERLADELTRHDLAYHQQDNPTISDADYDALKRRNLDIETRFPHL 62

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            R    N P  ++G         V H +P LSL+  ++ ++  +F  R+ RF +     +
Sbjct: 63  VRD---NSPSMRVGAARAEQFSPVRHGVPMLSLDNAFSNDEAEEFDARVRRFLRLSPSET 119

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184
           + +T EPKIDG   ++RYEKG  V  A RGDG +GEDV+A +R I  IP  L  +  P++
Sbjct: 120 LAYTAEPKIDGLSASLRYEKGVLVQGATRGDGQTGEDVTANLRTIADIPHRLKGSGWPDV 179

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL 243
           IEVRGEVY+    F A N      G++ YANPRN A+G LR+++ T    R L FF +  
Sbjct: 180 IEVRGEVYVELEAFAAFNKAAEDAGQRTYANPRNFAAGSLRQIDSTISAQRPLRFFGYAW 239

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           G  SE FA GQ+E L+K+R  GF       R+     G++  Y E +++R TL +DIDG+
Sbjct: 240 GLVSEPFAGGQWEALEKLRSWGFVTTAPPARRVENAQGLLDVYAEFEALRPTLNFDIDGV 299

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYKVD+  LQ++LG  +RSPRW I+ KF  ++A T L  ID+Q+GRTG +TPVARL+PV 
Sbjct: 300 VYKVDDLELQRRLGFVSRSPRWAIARKFPAQKARTLLEAIDLQVGRTGAITPVARLKPVT 359

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +GG ++TNATLHN D I+ L           D R+GD V+V+RAG+VIP++V++ ++ R 
Sbjct: 360 VGGVVVTNATLHNGDEIERL-----------DARIGDTVVVQRAGDVIPQIVEVALDARP 408

Query: 423 PDAQ-PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             A  P+ FP  CP      +      +G+     RCTG  AC  Q++E L+HFVSR AF
Sbjct: 409 DPAPEPYVFPHECPCPLKTPLAREVNASGQESVVRRCTGEFACPFQRVEHLRHFVSRRAF 468

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IEGLG++QL  FF        I  PADIF L  R +     +    G+G+ SV NL   
Sbjct: 469 DIEGLGEKQLQAFFDE----GWITEPADIFKL-ARDEEKLAALREREGYGETSVANLARG 523

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII-AHNNDDWLSLIR 600
           I  RR I+++R I+ LG R +G   +  LA+ +  +++  +       A   + +L L  
Sbjct: 524 IEARRTITMDRMIYGLGARDIGETTSTVLARNFDRFEDLQEAAEKAARALPGETYLELST 583

Query: 601 VPLVGDIIAQAIVE 614
            P VG     ++VE
Sbjct: 584 APGVGPKALDSLVE 597



 Score =  203 bits (517), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 88/164 (53%), Gaps = 2/164 (1%)

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA-HNNDDWLSLIRVPLVGDIIAQAIVE 614
              +  +      +LA+ Y ++  FA+ +    +    DD+L L  +  VG + AQ++  
Sbjct: 619 GHAVPKLTKPARAALAQRYGTWDAFAEGLAAAASGAPGDDYLHLAAIDGVGPVAAQSLAR 678

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+    N   V  L+ E+        K   + +  K +VFTG L+K+ R +A+     LG
Sbjct: 679 FFAEDHNRQKVANLVAELDIQPVEKPK-TDTAVAGKTIVFTGALEKMTRDEAKAQAEGLG 737

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A V++ +S+KTD+++ G   GSKL+ A +LG+++M E+++L L+
Sbjct: 738 AKVASSVSKKTDLVVAGPGAGSKLKTATELGIQVMTEDEWLALV 781


>gi|262341099|ref|YP_003283954.1| DNA ligase [Blattabacterium sp. (Blattella germanica) str. Bge]
 gi|262272436|gb|ACY40344.1| DNA ligase [Blattabacterium sp. (Blattella germanica) str. Bge]
          Length = 681

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 200/704 (28%), Positives = 342/704 (48%), Gaps = 52/704 (7%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
            L +E+S ++  YY +    I D  +D        +   +P+     DP  P  KIG E+
Sbjct: 27  QLRKELSKYNYQYYNFDTSDISDFHFDKKLEELFFLEKKYPEF---YDPTSPTIKIGAEI 83

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
           +       H     SL+K ++ ++L  +  +I +       ++  F  E K DG  I + 
Sbjct: 84  HEPSTVFYHKYKMYSLQKTYSKKELIIWKKKISKSI-----HTFSFVCELKYDGVSINLI 138

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLAL 201
           Y+ G    A  RG+G  GEDV+  I+ I  +P  L  N  P  +E+RGEV+++  +F+ +
Sbjct: 139 YKNGFLTNAGTRGNGEKGEDVTENIKTIKHVPLKLRGNNYPAYLEIRGEVFLTTKNFIEI 198

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
           N + I  G+ PYANPRN ASG L+  +   + +   F +        +    QYE L+ +
Sbjct: 199 NKKRIKSGKTPYANPRNTASGTLKIQDRKKVRQRNLFCIAFHVVGKNLPFDTQYESLKHI 258

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           +  GF +    R       +  + +     +  LPY IDG+V KV+E+  Q  LG   + 
Sbjct: 259 KNWGFQIPETARFCKNMEEVFHFIDFWNLWKDKLPYQIDGIVIKVNEYQKQSLLGFTNKY 318

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I++KF +K + T+LL +  Q+GRTGI+TPVA + P+ I G +I    L+N+ +I+ 
Sbjct: 319 PRWAIAYKFRQKLSETKLLSLTFQVGRTGIVTPVANVVPILISGTIIKRVALYNDSFIQK 378

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
           +            I  GD +L+++ G +IPKV  I + +R   A P  F   CP C S +
Sbjct: 379 M-----------GIYHGDTLLLEKGGNIIPKVTRINIKKRSSQAFPVFFLKKCPSCNSVL 427

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            ++                   C +Q++E+++HFVS  A NI+ +G + +   +K     
Sbjct: 428 TKNNE---------LFYCTNQNCFSQRIEKIRHFVSVKAMNIQKIGNEMIKKLYKK---- 474

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             +    +++ L++       ++  I G  +    ++ ++I K +     R +++LGIRH
Sbjct: 475 GFLYSFYNLYELKKE------ELLQIDGVKEKLADSIINNIKKSKENPFSRVLYALGIRH 528

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG +I++ L K +L   +              ++  LI +  +G  I ++I+ ++    N
Sbjct: 529 VGEDISKKLTKQFLDINSLMHA----------NYDHLISISGIGKKITESIITYFSIYEN 578

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
             AV+ L+K         +K  S  +E K  VFTG L  + RHKAQ  V  LG  V   +
Sbjct: 579 RHAVQMLIKYGLHFSKCSKKLSS--LEGKSFVFTGKLSCMTRHKAQNMVENLGGKVYNTV 636

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQYNTT 724
           + + + I++G N GSK +K+ +   V+I+ E  FL +L++    
Sbjct: 637 NNQINFIVIGKNFGSKFKKSMKKNHVQILTENLFLDMLKKAKKE 680


>gi|329889238|ref|ZP_08267581.1| DNA ligase, NAD-dependent [Brevundimonas diminuta ATCC 11568]
 gi|328844539|gb|EGF94103.1| DNA ligase, NAD-dependent [Brevundimonas diminuta ATCC 11568]
          Length = 774

 Score =  398 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 260/606 (42%), Positives = 361/606 (59%), Gaps = 28/606 (4%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             P+E L+  QAR+EL  L  E++ HD  YY  + P I D++YD LKRR  A+  AFP L
Sbjct: 5   FTPVETLTEAQAREELDRLSAELARHDALYYADAAPEISDADYDELKRRALALEAAFPAL 64

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           +    P  P  ++G  ++    +V H +P LSL+  ++  ++R F+ RI RF +   D  
Sbjct: 65  SG---PISPSQRVGAPVSTQFAEVRHGVPMLSLDNAFDEGEVRDFVARIARFLKLPGDEP 121

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184
           I F  EPKIDG   ++RYEKG  V  A RGDG +GEDV+A +R + +IP+ L+ +  P++
Sbjct: 122 IAFVAEPKIDGLSASLRYEKGVLVQGATRGDGKTGEDVTANLRTLDSIPQTLAGSGWPDV 181

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           IE+RGEVY     F A N    A G++ YANPRN A+G LR+ +P     R L FF +  
Sbjct: 182 IEIRGEVYAPNAAFDAFNAAAEAEGKRTYANPRNFAAGSLRQKDPKITALRPLTFFAYAW 241

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G+TS  FA+ Q   L+  R  GF VN+   +     G++  Y  +++ RS L YDIDG+V
Sbjct: 242 GETSAPFAETQAGALEAFRSWGFQVNDRSARVEGADGLIGVYQTLETDRSRLGYDIDGVV 301

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD    Q++LG  ARSPRW I+HKF  +QA+T L  IDIQ+GRTG LTPVARL PV +
Sbjct: 302 YKVDRLDWQQRLGFIARSPRWAIAHKFPAQQATTVLEGIDIQVGRTGSLTPVARLHPVTV 361

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG ++ NATLHNED I             +D+RVGD V+++RAG+VIP++V ++   R  
Sbjct: 362 GGVVVRNATLHNEDEIAR-----------KDVRVGDTVVLQRAGDVIPQIVGVVETLRPD 410

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           DAQP+ FP+ CP+C S  VR+ +          RCTGGL C AQ +ERLKHFVSR AF+I
Sbjct: 411 DAQPYIFPTVCPVCGSEAVREGDE------VKRRCTGGLICDAQIVERLKHFVSRRAFDI 464

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG++QL  F         I+ PADIF L  R +     +    G+G+ SV NL   I+
Sbjct: 465 EGLGEKQLIAFHAR----GWIKEPADIFRL-ARDEEKLALLRAEDGYGETSVGNLIAGID 519

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE-INNIIAHNNDDWLSLIRVP 602
            RR ISL+R IF LG+R +G + +  L++ + S+  F    +       +DDW +L    
Sbjct: 520 ARRVISLDRLIFGLGVREIGEQTSLVLSRAFGSWTAFRDACMAAASGLASDDWKTLAATH 579

Query: 603 LVGDII 608
            +   +
Sbjct: 580 AISTRV 585



 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 1/164 (0%)

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD-WLSLIRVPLVGDIIAQAIVE 614
           +L    + A   RSLA+    + +  +           D    +  V  VG + A+A+  
Sbjct: 610 ALAFPGMAAPARRSLAEISEGWSDLTRWAAVARDEGPSDMLNQIAGVSGVGPVAAEALAH 669

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+  P N+  V+ALL E+            S +  K +VF+G+L++  R +A+     LG
Sbjct: 670 FFHEPHNLQVVDALLAELERVEDVAAPVTDSPVAGKTVVFSGSLERFTRDEAKARAESLG 729

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A VS  +S+KTD ++ G   GSKL+ A++ GV ++ E+++L L+
Sbjct: 730 AKVSGSVSKKTDYVVAGPGAGSKLKDAEKHGVTVLTEDEWLALI 773


>gi|240141492|ref|YP_002965972.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1]
 gi|240011469|gb|ACS42695.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1]
          Length = 814

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 254/629 (40%), Positives = 371/629 (58%), Gaps = 31/629 (4%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
                  +EALS + A+   + L + I   +  YY    P + D+EYDAL++  +AI   
Sbjct: 3   STPLSAAVEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEAR 62

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP L  + +       +G + +    KV H++P LSL   +  ED+ +F+ R+ RF    
Sbjct: 63  FPALTGTTEA---SAGVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLP 119

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
            + ++ FT EPKIDG  +++RYE G+ V AA RGDG  GE+V+A    +  IP  LS   
Sbjct: 120 AEEAVAFTAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVDDIPETLSGEN 179

Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            PE++EVRGEVY+S  DF A+N    A G+  +ANPRNAA+G LR+L+P    +R L FF
Sbjct: 180 IPEVLEVRGEVYLSHEDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFF 239

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +  G+ SE F   Q  +L++ R  G PVN   +   +   ++++Y  +++ R+ L YDI
Sbjct: 240 AYAWGEVSEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRTIEAERAGLGYDI 299

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKVD+   Q++LG  +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+
Sbjct: 300 DGVVYKVDDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLK 359

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV D++++
Sbjct: 360 PVTVGGVVVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVID 419

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R  DA P+ FP  CP C SR VR+LNP+T KL A  RCTGGL C AQ +ERLKHFVSR+
Sbjct: 420 KRPADAVPYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRN 479

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR---------------------QQ 518
            F++EG G+  ++  F+    A  ++ PAD+F L+                       + 
Sbjct: 480 GFDLEGFGQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRAEGEP 535

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578
                 +      D ++ NL  S++ RR I L RF+F+LGI  +G   A++LAK +    
Sbjct: 536 APKKPTKKKGEEEDKAIKNLLASLDARRTIPLNRFLFALGIPQIGESTAKALAKRFPDMP 595

Query: 579 NFAQEINNII-AHNNDDWLSLIRVPLVGD 606
                +          DWL L  +P +G 
Sbjct: 596 ALMAALAAATREQAGQDWLELSALPRIGP 624



 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 82/154 (53%), Gaps = 2/154 (1%)

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-VGDIIAQAIVEFYQNPRNICAVE 626
            ++  +Y S       +    +    D   L      +G +   ++++F+  P N  AV 
Sbjct: 661 EAVLAHYGSEAEADAALERAASQRPGDAYRLFADDGEIGPVATDSLIQFFSEPHNDAAVR 720

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           ALL+EV         + ++    K +VFTG+L+K+ R +A+    +LGA VS  +S KTD
Sbjct: 721 ALLEEVGTEPLATTTSAAAF-AGKTVVFTGSLEKMTRSEAKATAERLGAKVSGSVSAKTD 779

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +++ G   GSKL+ A++ GVK+++E+ +L +L +
Sbjct: 780 LVVAGPGAGSKLKDAEKHGVKVVSEDDWLAMLAE 813


>gi|260587930|ref|ZP_05853843.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
 gi|331084525|ref|ZP_08333626.1| DNA ligase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260541457|gb|EEX22026.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
 gi|330401233|gb|EGG80824.1| DNA ligase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 650

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 181/704 (25%), Positives = 308/704 (43%), Gaps = 66/704 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  L + ++     YYQ  + I+ + EYD L      +               P   +
Sbjct: 5   KRMKELLKLLTEASKAYYQEDREIMSNFEYDKLYDELVQLERE----TGVTLAGSPTASV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G E    L K  H  P LSL+K  +IE LR FI                  L  K+DG  
Sbjct: 61  GYEALDELPKEAHESPMLSLDKTKDIEALRAFI------------GEQKSLLSWKLDGLT 108

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I + Y +GK   A  RG+G  GE ++   +    IP  L +     + +RGE  I+ +DF
Sbjct: 109 IVLTYHEGKLQKAVTRGNGTVGEVITGNAKVFKNIP--LQIAYQGELVLRGEAIITYSDF 166

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG-QYE 256
             +N   I      Y NPRN  SG +R+LN      R +NF+   L K   +  +  + +
Sbjct: 167 EKINA-QIEDVDAKYKNPRNLCSGSVRQLNNEITAKRNVNFYAFSLVKAEGVDFQNSREQ 225

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
               ++  GF V                 +   +  S   +  DGLV   D+ +  + LG
Sbjct: 226 QFCWLKEQGFDVVEYRVVTGETLD--EAMDYFSNQVSKNDFPSDGLVVLYDDIAYGESLG 283

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ PR   + K+ ++   T L +I+    RTG++ PVA  EP+ + G  ++ A++HN 
Sbjct: 284 STAKFPRNAYAFKWKDEIRETVLKEIEWSASRTGLINPVAIFEPIELEGTTVSRASVHNI 343

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
             +K L            + +GD++ V +A  +IP++ + +    + +            
Sbjct: 344 SIMKELQ-----------LGIGDKIQVYKANMIIPQIAENLTRSGNLEIPKI-------- 384

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
               V +                    C A++++    FVSRDA NI+GL +  L+ F  
Sbjct: 385 --CPVCKKEARVIKTNEVEALYCMNEECQAKKIKSFTLFVSRDAMNIDGLSEATLEKFIL 442

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  IR   DIF +++ +     +I  + GFG  S  NL  S+ K ++ +L R ++S
Sbjct: 443 K----GFIRDFGDIFEIEKYKD----EILEMEGFGQKSYENLIASLEKAKHTTLPRVLYS 494

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI ++G   A+ + K          +I  +IA N      +  +  +G +IA+A  E++
Sbjct: 495 LGIANIGLANAKLICKE------LQYDIEKMIAANE---EEISSIEGIGPVIAKAYTEYF 545

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGA 675
            N  N+     LL  +       E+N+S  +E K+ V TG++     R + +E + + G 
Sbjct: 546 ANEENLKKFRHLLSHLELEEVTREENLS--LEGKQFVITGSVVHFANRAQLKEEIEKRGG 603

Query: 676 VVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFL 717
            V+  ++ KT  +I  D  +  SK +KA++LG+ I++E+ F+ +
Sbjct: 604 KVTGSVTSKTHYLINNDTTSNSSKNKKAKELGIPILSEDDFMKM 647


>gi|218532981|ref|YP_002423797.1| DNA ligase, NAD-dependent [Methylobacterium chloromethanicum CM4]
 gi|254781363|sp|B7KU78|DNLJ_METC4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218525284|gb|ACK85869.1| DNA ligase, NAD-dependent [Methylobacterium chloromethanicum CM4]
          Length = 814

 Score =  396 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 253/622 (40%), Positives = 370/622 (59%), Gaps = 31/622 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +EALS + A+   + L + I   +  YY    P + D+EYDAL++  +AI   FP L  +
Sbjct: 10  VEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEARFPALTGT 69

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            +       +G + +    KV H++P LSL   +  ED+ +F+ R+ RF     + ++ F
Sbjct: 70  TEA---SAGVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLPAEEAVAF 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEV 187
           T EPKIDG  +++RYE G+ V AA RGDG  GE+V+A    +  IP  LS   IPE++EV
Sbjct: 127 TAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVDDIPETLSGEGIPEVLEV 186

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246
           RGE+Y+S  DF A+N    A G+  +ANPRNAA+G LR+L+P    +R L FF +  G+ 
Sbjct: 187 RGEIYLSHEDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFAYAWGEV 246

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           SE F   Q  +L++ R  G PVN   +   +   ++++Y  +++ R+ L YDIDG+VYKV
Sbjct: 247 SEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRAIEAERAGLGYDIDGVVYKV 306

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+   Q++LG  +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+PV +GG 
Sbjct: 307 DDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLKPVTVGGV 366

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV D+++ +R  DA 
Sbjct: 367 VVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVIEKRPADAV 426

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P+ FP  CP C SR VR+LNP+T KL A  RCTGGL C AQ +ERLKHFVSR+  ++EG 
Sbjct: 427 PYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNGLDLEGF 486

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRR---------------------QQTSTTKIE 525
           G+  ++  F+    A  ++ PAD+F L+                       +       +
Sbjct: 487 GQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRTEGEPAPKKPTK 542

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
                 D ++ NL  S++ RR I L RF+F+LGI  +G   A++LAK +         + 
Sbjct: 543 KKGEEEDKAIKNLLASLDARRTIPLNRFLFALGIPQIGESTAKALAKRFPDMPALMAALA 602

Query: 586 NII-AHNNDDWLSLIRVPLVGD 606
                    DWL L  +P +G 
Sbjct: 603 AATREQAGRDWLELSALPRIGP 624



 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 82/154 (53%), Gaps = 2/154 (1%)

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-VGDIIAQAIVEFYQNPRNICAVE 626
            ++  +Y S       +    +    D   L      +G +   ++++F+  P N  AV 
Sbjct: 661 EAVLAHYGSEAEADAALERAASQRPGDAYRLFADDGEIGPVATDSLIQFFSEPHNDAAVR 720

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           ALL+EV         + ++    K +VFTG+L+K+ R +A+    +LGA VS  +S KTD
Sbjct: 721 ALLEEVGTEPLAATTSAAAF-AGKTVVFTGSLEKMTRSEAKATAERLGAKVSGSVSAKTD 779

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +++ G   GSKL+ A++ GVK+++E+ +L +L +
Sbjct: 780 LVVAGPGAGSKLKDAEKHGVKVVSEDDWLAMLAE 813


>gi|294155884|ref|YP_003560268.1| DNA ligase (NAD(+)) [Mycoplasma crocodyli MP145]
 gi|291600422|gb|ADE19918.1| DNA ligase (NAD(+)) [Mycoplasma crocodyli MP145]
          Length = 657

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 189/706 (26%), Positives = 337/706 (47%), Gaps = 53/706 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           ++   +   L  +I  +++ YY   +P + D+EYDAL +    I    P +      + P
Sbjct: 3   QKVIDKYQELIAKIKQYNNEYYNLDQPSVSDAEYDALYKELLEIEKQNPKIINQ---DSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              IGG  +    K TH    LSL+K  + +++ KF   I++  +  +     F LEPK+
Sbjct: 60  SQIIGGFASSKFSKYTHQKLMLSLDKATHFDEITKFYNDIFKVIKTDNKG---FFLEPKV 116

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I++ YE G    A  RGDG  GEDVS  +  I  +     +   + IE+RGE+Y+S
Sbjct: 117 DGLSISLHYENGILQRAVTRGDGLVGEDVSENVLQIKEVKH--KIAYKKPIEIRGEIYLS 174

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKG 253
           K +F  LN ++   G K +ANPRNAASG LR+L+      R L   ++ L          
Sbjct: 175 KENFNKLNKKIEDQGLKSFANPRNAASGTLRQLDKNIVRERNLGIVLYELVDPLVHKITS 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           Q + +  +  LGFP     +       I++Y  E   I++ L YD DGLV K ++    K
Sbjct: 235 QDQSISFINQLGFPTQKNNKLLYELDDILNYIEEFGEIKNNLDYDCDGLVIKYNDIEQWK 294

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  ++ P++ I++K+  ++A TR+  I I  GRTG +  +A +EPV +  ++++ ATL
Sbjct: 295 LLGFTSKFPKYAIAYKYQVEEAITRINKISISTGRTGKINYLAHVEPVELNQSIVSKATL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN +YI+ L           ++ +GD V++ +AGE+IPKV ++   +       F     
Sbjct: 355 HNYNYIEEL-----------NLNIGDDVVIIKAGEIIPKVRELKQKKSIG---VFPKLIN 400

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           C  C+S++    +          +      C  + +  L +F S+   +I+G+G + +  
Sbjct: 401 CLSCKSKLEYIDDNLE-------QYCLNKNCQEKIINSLIYFASKPCLDIKGMGDKVVKI 453

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            +++      +    D F L  ++     K+  +  F +  V NL ++I   +   L + 
Sbjct: 454 LYEN----GLVLEIKDFFELHNKRD----KMLQLPSFKEKKVDNLINAIETIKKAQLHKV 505

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I +LG++++G   ++ ++            IN +      +   L  +  +G     +I 
Sbjct: 506 IIALGMKNIGTRSSKLISTK----------INKLSDLLTYNIDELENIDDIGPKSIASIK 555

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           EF    +N   +  L       I  ++ ++ +++ N     TGTL K  R    + + + 
Sbjct: 556 EFLSEDKNKELITFLDNY---FIQVNDSSIGNKLVNLSFSITGTLLK-PRDYFVDLIEKN 611

Query: 674 GAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLL 718
           G     + + KT+ +IVG+NPGS K+ KA+ LG +++  ++F  ++
Sbjct: 612 GGQFHKLPTSKTNYLIVGENPGSAKINKAKILGTQVITIDEFEKMI 657


>gi|319787332|ref|YP_004146807.1| DNA ligase, NAD-dependent [Pseudoxanthomonas suwonensis 11-1]
 gi|317465844|gb|ADV27576.1| DNA ligase, NAD-dependent [Pseudoxanthomonas suwonensis 11-1]
          Length = 788

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 215/651 (33%), Positives = 349/651 (53%), Gaps = 55/651 (8%)

Query: 12  LSIEQA-RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ++   A     + L + I   +  Y++   P I D++YDAL R  +A+    P+LA    
Sbjct: 1   MTSSPAPADRAAELRRRIEDANRRYHELDAPDITDAQYDALVRELEALEREHPELAA--- 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++G   +     VTH++P LSL   +  E++  F+ RI +  ++ +D  + F+ 
Sbjct: 58  EDSPTRRVGATPSGRFAAVTHAVPMLSLGNAFTDEEVADFVRRIRQRLER-EDGDLAFSA 116

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189
           EPK+DG  I++RYE G FV  A RGDG +GEDV+A +R I  IP  L+    P ++EVRG
Sbjct: 117 EPKLDGLAISLRYEDGVFVQGATRGDGATGEDVTANLRTIGDIPHQLAGKGWPRVLEVRG 176

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS- 247
           EVY+ + DF   N+     G K  ANPRN A+G LR+ +P     R L+FF +G+G    
Sbjct: 177 EVYMGRADFERWNEHARLHGGKVLANPRNGAAGSLRQQDPKITAQRPLSFFAYGVGLVEG 236

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                     L+++R  GFPV++ V+      G++ YY  +   R  LP+DIDG+VYK+D
Sbjct: 237 GELPPSHSATLRQLRDWGFPVSDLVQVVRGLDGLLGYYRHIGEARDGLPFDIDGVVYKLD 296

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   Q+++G  +R+PRW I+HKF  ++ +T +  +++ +GRTG +TP A ++PV +GG  
Sbjct: 297 DQEGQREMGFVSRAPRWAIAHKFPAQEQTTVVESVEVSVGRTGAVTPWALMQPVLVGGVT 356

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +T ATLHN D++  L           D+R GD V+V+RAG+VIP+VV +++++R PDA+P
Sbjct: 357 VTRATLHNADHVARL-----------DVRNGDTVIVRRAGDVIPEVVQVVIDQRPPDARP 405

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +S P+ CP C S VVR+         A  RC+G L+C AQ ++ + HF SR A +I+GLG
Sbjct: 406 WSMPATCPACGSEVVREEG------AAVWRCSGELSCPAQLVQSVFHFASRRAMDIDGLG 459

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL----------------GFG 531
           ++ ++   +       +R  +D++ L         +  +                     
Sbjct: 460 ERYIESLAE----FGYLRDVSDLYRLTLDDLLEMKRRADEREGTTPVAPAKSGVKSGKVA 515

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
                NL  +I+  RN +L RF+++LGI+HVG   A++LA++    +             
Sbjct: 516 TRWADNLLAAIDTSRNTTLARFLYALGIQHVGESTAKALAQWLGDLELIRHLP------- 568

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
              W    R+P +G  +A+A+  F+  P N   ++ LL+        H  +
Sbjct: 569 ---WPLFRRLPDIGGEVARALGHFFDQPGNQAVIDRLLERGVRIGDSHAPD 616



 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
              A A+V + + P N   +    +    V   +   +   S  +E   +V TGTL  + 
Sbjct: 669 PETASALVAWLEAPGNAELLLRSAQAQARVRALLPAADAVASGPLEGMTVVLTGTLSSMS 728

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           R +A+E +  LGA  +  +S+KT  ++ G+  GSKL KA +LG+++ +E + L  L+Q+
Sbjct: 729 RDEAKEKLEALGAKAAGSVSKKTSFVVAGEAAGSKLAKAGELGIEVWDEARLLAFLEQH 787


>gi|291320206|ref|YP_003515467.1| DNA ligase [Mycoplasma agalactiae]
 gi|290752538|emb|CBH40510.1| DNA ligase [Mycoplasma agalactiae]
          Length = 654

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 207/709 (29%), Positives = 346/709 (48%), Gaps = 55/709 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E+A++ + SL + I+  +  YYQ +KP + D EYD      + +    PDL  +   
Sbjct: 1   MQKEKAKELIKSLVETINQWNYEYYQLNKPSVSDLEYDKALLELEKLEKEHPDLILN--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  +IG   +    K  H  P LSL K +N +D+  FI  I +        +I F +E
Sbjct: 58  NSPTFRIGSFASEKFTKFVHQKPMLSLAKAYNYDDINSFINNISKIV---PTENINFNIE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y++GK V AA RGDG  GEDV+  I  I +IP    +N    +EVRGEV
Sbjct: 115 PKIDGLSIALHYKQGKLVKAATRGDGSEGEDVTENIYQIKSIP--KLINYLNDLEVRGEV 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           +I+KNDF  +N+       +  A     +  + +        R L+ F++ + +  +   
Sbjct: 173 FITKNDFKKINESNNFANARNAA-----SGTLRQLDANIVAERNLSAFLYEIVEPEKHGI 227

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q+E L+ M+ L FP N   +       +    N+   I++ L YD DGLV K+D+  +
Sbjct: 228 YYQHEALEFMKNLNFPTNPFSKVV-EIEELEESINDFAEIKNKLDYDADGLVIKLDDLQM 286

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             +LG+ ++ P+  I+ K+  + AS++++DI   +GRTG +T +A + PV +    +  A
Sbjct: 287 WDKLGKTSKFPKHSIAFKYDVEIASSKIIDILTSVGRTGKITYIANILPVLLNQTTVKAA 346

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN ++IK +           +I + D V + +AGE+IPKV+ +   + + D   +   
Sbjct: 347 TLHNHNFIKDM-----------NININDEVNIIKAGEIIPKVISLKEEKNYVD--YYKKA 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S++V              +      C  + +  + HF SR+  NI GLG   +
Sbjct: 394 TNCPSCGSQLVEFEG-------IVDQFCTNDECPDKNINNIYHFASRNCLNIVGLGLSTV 446

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             F+        I+   DIF L R +     ++  +  + D+ V N+ +SI   +N    
Sbjct: 447 KDFYPK-----FIKNIKDIFDLHRHRA----ELIKLPRYRDLKVDNILNSIESAKNKKFS 497

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + IF+LGI+H+G   A+ +A  Y ++     +          + L L     +G  I ++
Sbjct: 498 KVIFALGIKHIGQRAAKLIADNYANFAELLDD---------HNLLKLQNTKNIGPKIIES 548

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           ++EF  +P N   +  L      +     K +S+ +     V TG L +  R    + + 
Sbjct: 549 LIEFISSPANQDLLAFLDAI--FNYEGKAKVISTILSGYTFVITGVLSE-PRSHFVKLIE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +    VS+ +S KT  ++ G + GSKLEKA + G K++NEEQF  L++Q
Sbjct: 606 EHSGNVSSAISSKTSYLLAGSDAGSKLEKAYKTGTKVINEEQFYDLIKQ 654


>gi|302385528|ref|YP_003821350.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1]
 gi|302196156|gb|ADL03727.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1]
          Length = 672

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 169/712 (23%), Positives = 290/712 (40%), Gaps = 57/712 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
               ++   L + ++ + + YY ++ P + D  YD L  +   +             N P
Sbjct: 3   ANIYEKQRDLTERLNIYREQYYDHNAPSVSDEIYDRLFDKLKELEQQ----TGIHMANSP 58

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +G  +   L K  H IP LSLEK  + EDL  F                   L  K+
Sbjct: 59  TQTVGYPVMSKLEKTIHEIPLLSLEKTKSSEDLELF------------QGKHQVMLMLKL 106

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  + + YE G+ V  A RGDG  GE ++   R I  IP  + +     + V GE +I 
Sbjct: 107 DGLTVKLTYENGRLVEVATRGDGDEGEIITHNTRGITGIP--VQIPYSGRLVVTGEAFIR 164

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKG 253
             DF  L  +++    +PY N RN A+G +R L+      R + F   G+ +        
Sbjct: 165 PVDFEILKIKLLDSTGRPYKNGRNLAAGSVRLLDAVACRDRKVVFMPFGVLEGYPDMTTK 224

Query: 254 -QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q                  ++  T   I     +++         IDG+V   ++ +  
Sbjct: 225 SQKLSQLPALGFSICKFLVSKRPLTLAEIEQAIQQLQQFAKANGIPIDGIVMSYNDIAFS 284

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K  G      +  ++ KF ++   +RLL I+    R+G + PVA  + V I G  ++ A+
Sbjct: 285 KSCGRTGHHYKDGMAFKFEDELYESRLLHIEWNTTRSGEIAPVAVFDTVEIDGCEVSRAS 344

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN  +I+ L+           +  G+R+LV +   +IP + D    +R         P 
Sbjct: 345 LHNLTFIESLE-----------LMPGNRILVSKRNMIIPHIEDN--LDRGGFLLGSVIPH 391

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHR----CTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            CP C       +  +                   C  ++L R  HFVS+ A +I GL +
Sbjct: 392 ECPCCGQSTRIHVGEERSVEGEVRTTKTLFCDNPDCETRRLRRFVHFVSQKAMDIAGLSE 451

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             L+           I    DI+ L R +     +I  + GFG+ S  NL+D+I + RN 
Sbjct: 452 ATLEKLIGR----GWIHTYMDIYRLDRHRG----EIVRMDGFGEKSWQNLWDAIQQSRNT 503

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           + ER++ ++ I  +G   +++L K +  S  +F   +               ++P  G+ 
Sbjct: 504 TFERYVIAMDIPMIGNSASKALRKEFNGSLSDFEMAVYQGY--------DFTQLPDFGET 555

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRH 664
           +   I +++    NI + + L K +       E    +  S      +V TG ++   R 
Sbjct: 556 LHNNIRDWFSLEENIYSWDELQKLLCIEKKLAETVPSDEDSAFVGCTIVVTGKVEPYTRE 615

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
              + +  LGA     +S KTD ++ G+  G KL KA++LG+ ++   +F  
Sbjct: 616 GINDLIESLGAHPGNSVSSKTDYLVCGEKAGGKLMKARELGIPVLTPAEFFQ 667


>gi|167761341|ref|ZP_02433468.1| hypothetical protein CLOSCI_03749 [Clostridium scindens ATCC 35704]
 gi|167661007|gb|EDS05137.1| hypothetical protein CLOSCI_03749 [Clostridium scindens ATCC 35704]
          Length = 649

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 184/705 (26%), Positives = 308/705 (43%), Gaps = 65/705 (9%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L + ++     YYQ ++ I+ + EYD L      +             N P   +G 
Sbjct: 1   MQELVELLNKAGRAYYQNAEEIMSNYEYDRLYDELLKLEEE----LGLTLSNSPTANVGY 56

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           E+   L K  H  P LSL+K  ++E+L++F+                  +  K+DG  I 
Sbjct: 57  EVLSELPKERHERPMLSLDKTKDVEELKRFV------------GDQKALMSWKMDGLTIV 104

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y +G+   A  RG+G  GE V+   R    IP  L +     + +RGE  I   DF  
Sbjct: 105 LTYREGRLFKAVTRGNGEVGEVVTNNARVFKNIP--LQIAYQGQLILRGEAVIGYKDFEK 162

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY-EML 258
           +N+E+  V    Y NPRN  SG +R+LN      R + F+   L +   +         +
Sbjct: 163 INEEIEDV-DARYKNPRNLCSGSVRQLNNEITAKRNVKFYAFSLVEAEGVDFYNSRARQM 221

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             +   GF V                  +     +   +  DGLV   D+ +  + LG  
Sbjct: 222 NWLIEQGFEVVEFQEVTRDTVEAEVL--KFSEKIAQNDFPSDGLVLVYDDIAYGQSLGRT 279

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           ++ PR   + K+A++   TRLL+I+    RTG++ PVA  EPV + G  ++ A++HN   
Sbjct: 280 SKFPRDSFAFKWADELRETRLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVHNISI 339

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           ++ L+           + VGD + V +A  +IP++   +      D              
Sbjct: 340 MEELE-----------LGVGDTIEVYKANMIIPQIARNLTRSGVKDIP----------KN 378

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             V R          A         C A+ ++    FVSRDA NIEGL +  L+ F    
Sbjct: 379 CPVCRGRTEVRQVSNAKALYCINPDCQAKHVKSFALFVSRDALNIEGLSEATLEKFIS-- 436

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                IR  ADIF L R ++    +I+ + GFG+ S  NL DSI K R  +L R I+ LG
Sbjct: 437 --MGYIREYADIFHLDRYRE----EIQTMEGFGEKSYQNLIDSIEKARTTTLPRVIYGLG 490

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I ++G   A+ + K +           ++ A        L  +  +G++IA A V+++ +
Sbjct: 491 IANIGLANAKMICKEFQ---------YDLEAMLKATVEELNAISGIGEVIATAFVDYFSD 541

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVV 677
             +   +  LL E+         + +        V TG+++    R++ +E +  LG  V
Sbjct: 542 NVHRKRLRNLLAELII-PKEEADSAAQIFNGVNFVITGSVEHFANRNEVKELIESLGGKV 600

Query: 678 SAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  ++ KT+ +I  D  +  SK +KA  LG+ I++EE FL ++++
Sbjct: 601 TGSVTSKTNYLINNDVTSTSSKNKKANDLGIPIISEETFLKMVEE 645


>gi|226325717|ref|ZP_03801235.1| hypothetical protein COPCOM_03530 [Coprococcus comes ATCC 27758]
 gi|225205841|gb|EEG88195.1| hypothetical protein COPCOM_03530 [Coprococcus comes ATCC 27758]
          Length = 687

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 176/695 (25%), Positives = 292/695 (42%), Gaps = 64/695 (9%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +++S+    K + +L ++++ +   YY    P++ D+EYD L      +      +    
Sbjct: 25  DSMSV----KRIKNLVKQLNEYRHAYYNQDAPLVSDAEYDRLFDELKELEEQTGFILS-- 78

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             N P   +G      L KVTH IP LSLEK   I +L  F+              + F 
Sbjct: 79  --NSPTQTVGYYPVSELAKVTHPIPLLSLEKTKLISELLDFMK----------GQEVLFM 126

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
              K+DG    + YE G+ + A+ RGDG  GED++  I A   +P  L++   E + + G
Sbjct: 127 --LKLDGLTTKLIYEDGRLIQASTRGDGEVGEDITHNIPAFLNVP--LTIPHKERLVITG 182

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248
           E +I  NDF  L D +     KPY N RN ASG +R L+P +   R + F    + +  E
Sbjct: 183 ESFIPTNDFERLKDTLRDGNGKPYKNGRNFASGSVRSLDPKNCIGRCVRFLPFNVLEGME 242

Query: 249 IFAKGQYEMLQKMRCLG-----FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                     +            P  +      +      +  E+ S  + L   IDG+V
Sbjct: 243 DVPFPDSRACKLEGLTHLGFGYCPFFSISGTGLSKEYAEKFIQELVSTAANLHLPIDGIV 302

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
              D  S  K  G+     +  +++KF +    T L +I+    R G + PV   + V I
Sbjct: 303 MIFDSLSYSKSCGKTGHHYKDGLAYKFEDDTYETFLREIEWTPTRFGEIAPVGIFDTVEI 362

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  ++ A+LHN  +IK L+           +  G R+LV +   +IP + D +   R+ 
Sbjct: 363 DGCDVSRASLHNLTFIKNLE-----------LVPGCRILVSKRNMIIPHIEDNLDRGRYT 411

Query: 424 DAQPFSFPSFCPICQSRVV-RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           D      P  CP C S+          G+ V    C     C +Q   R  HF S+ A N
Sbjct: 412 D----ITPPVCPCCGSKTRTYSRKTSDGRTVETLHCDNPQ-CDSQITRRFVHFASKKAMN 466

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGL +  L+ F         +    DI+ L+  ++     I  + G+G+ S   L++SI
Sbjct: 467 IEGLSEATLEKFLN----LGYLHSFQDIYHLEEHRE----DIVALDGYGEKSFDRLWESI 518

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRV 601
           N  R  S  R++ S+ I  +G   +R L   +  +   F Q                 ++
Sbjct: 519 NASRRTSFVRYLVSMDIPMIGRTKSRILDTVFSGNLTAFEQAAVGDY--------DFTQL 570

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQ 659
              G+I+   I  ++ +  N+   + L  E +    + E      ++     +V TG L+
Sbjct: 571 EDFGEILNHNIHSWFADEANLDLWKNLQNEFTFEQRKEETIMTKENKFTGCTIVATGKLE 630

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
              R    + + +LGA   + +++KTD +I G+ P
Sbjct: 631 HFTRDGINDKILELGAKPGSSVTKKTDYLICGEKP 665


>gi|302337851|ref|YP_003803057.1| DNA ligase, NAD-dependent [Spirochaeta smaragdinae DSM 11293]
 gi|301635036|gb|ADK80463.1| DNA ligase, NAD-dependent [Spirochaeta smaragdinae DSM 11293]
          Length = 703

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 200/751 (26%), Positives = 332/751 (44%), Gaps = 96/751 (12%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E+A +E+  L   +  ++  YY   KP + D+EYD L  R   +   +P+L R    + 
Sbjct: 9   KEKATEEVRRLADLLFRYNRAYYIEGKPEVSDTEYDRLFLRLQELEEQWPELKRE---DS 65

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +++    +V H +P LSL+K +++E+L  ++ R       ++ + + F +E K
Sbjct: 66  PTLRVGSDLSSDFPEVEHRVPVLSLDKAYSVEELLGWMGRT----SGREASGLSFVVEEK 121

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I + Y  G    A  RG+G+ G DV+  +R I ++P  L+  +   I VRGE+Y+
Sbjct: 122 IDGVSIVLYYRGGILERAVTRGNGYVGNDVTDNVRTIGSVPLRLTEAV--DIAVRGEIYL 179

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            K  F      +       Y NPRN A+G LRR+   ++           G       K 
Sbjct: 180 PKASFE----SLNRKMGNLYVNPRNLAAGTLRRVKSREVAEVPLTIFVYEGF-FSDGPKS 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL------------------ 295
             E+L+ ++ LGF  N  V        +  +       +S                    
Sbjct: 235 HLEILEYLQSLGFRTNRRVGIFTNRTDLADFSRRHPDWQSGTWDELEGYVRTSTEERGSL 294

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            Y+IDGLV K++E  ++ +LG     PRW I++KF     ++ +  IDIQ+GRTG +TPV
Sbjct: 295 DYEIDGLVVKINELDVRDRLGYTGHHPRWAIAYKFESPTGTSIIKSIDIQVGRTGRITPV 354

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           AR+EPV +GG+ I+N TLHN+DY+  L+           I VGD+V + R G+VIP V +
Sbjct: 355 ARVEPVFVGGSTISNVTLHNQDYVDMLE-----------IAVGDQVSISRRGDVIPAVEE 403

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           ++      +   ++ P  CP C S +         K  A   C   L+C  Q   RL  F
Sbjct: 404 VVAKNESGN-PVWNMPLLCPSCGSSLQ--------KKGAHTFCLN-LSCPDQVRGRLFFF 453

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           ++    +I+GLG + +D   +       +  PAD++     +           GFG+  +
Sbjct: 454 IAAGQMDIDGLGPETVDLMIRE----GFVSEPADLYRFDYERLLPY------PGFGEKKI 503

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDD 594
             +   + K         + S+GI  +G ++   L    + S +     ++        +
Sbjct: 504 EAIRRGLEKSLTRPFHTVLASVGIPEMGKKVIELLISAGFRSMKAIYALVDQ------KN 557

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKK 651
             +LI V  +G+     I E          +  L +         + +++SE      + 
Sbjct: 558 RDALIAVKGIGEKTVDTIFEELGREAVRKRINELAEVGLAMEEEEKLSIASEQLIFAGQS 617

Query: 652 LVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSR-----------KTDIIIVGDNPGSKLE 699
              TG+ Q    R KA E            +SR           KT  ++ G+  GSKL 
Sbjct: 618 WCVTGSFQHFNPRGKAMEL-----------VSRFGGSVVSSVSGKTSHLLAGEGGGSKLT 666

Query: 700 KAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730
           KA+ LGV++++EE+FL LL      +   D 
Sbjct: 667 KARSLGVEVLSEEEFLDLLASAGIEIPSADA 697


>gi|237739847|ref|ZP_04570328.1| NAD-dependent DNA ligase [Fusobacterium sp. 2_1_31]
 gi|229423455|gb|EEO38502.1| NAD-dependent DNA ligase [Fusobacterium sp. 2_1_31]
          Length = 594

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 202/634 (31%), Positives = 327/634 (51%), Gaps = 46/634 (7%)

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL   +NI ++  FI RI +   K+    + + LE K+DG  I++ Y +GK V A  R
Sbjct: 1   MLSLANSYNIGEVVDFIERIKKRISKE--QELKYCLEVKLDGLSISLTYIQGKLVRAVTR 58

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           GDG  GEDV+  I  I ++  V +L     IE+RGE+ +    F  LN E +  G + +A
Sbjct: 59  GDGFIGEDVTENILQIASV--VKTLPQALDIEIRGEIVLPLASFEKLNKERLEKGEELFA 116

Query: 215 NPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRNAASG LR+L+P  +    L+ + + L +  ++  K   E ++ +  +G        
Sbjct: 117 NPRNAASGTLRQLDPKIVKERALDAYFYFLVEADKLGLKSHSESMKFLESMGIKTTGIFE 176

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
                  I    +  +  R  LPY+ DGLV KVDE +L  ++G  +++PRW I++KF   
Sbjct: 177 LLENSKDIEQRIDYWEKERENLPYETDGLVIKVDEINLWDEIGYTSKTPRWAIAYKFPAH 236

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
           Q ST L D+  Q+GRTG LTPVA LE V + G+ +  A+LHN   I+            +
Sbjct: 237 QVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNISEIQR-----------K 285

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
           DIR+GDRV +++A E+IP+VV  I  ER  + +    P  CP+C  ++ R+      K  
Sbjct: 286 DIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKTIEEPINCPVCNHKLEREEGLVDIK-- 343

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
                     C A+    +++FVSRDA NI GLG + ++ F         I+   DI+ L
Sbjct: 344 -----CVNEECPAKIQGEIEYFVSRDALNIMGLGSKIVEKFID----LGYIKTVVDIYDL 394

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
           +  ++     +ENI   G  S+ NL +SI + +N   ++ I++LGI  +G   ++ LAK 
Sbjct: 395 KNHRE----DLENIDKMGKRSIENLLNSIEESKNREYDKVIYALGIPFIGKVASKVLAKA 450

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
             +               +  +  L  +  +G+I A  I+ F++  +    V AL ++  
Sbjct: 451 SKNIDKLM----------SMTFEELTSIEGIGEIAANEIIAFFKKEKTQKLVAALKEKGL 500

Query: 634 PSI----GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
                      +N++     K  +FTGTL+   R + +E + +LG    + +S+  D +I
Sbjct: 501 KFEITESETKVENLNPNFAGKNFLFTGTLKHFTREQIKEEIEKLGGKNLSSVSKNLDYLI 560

Query: 690 VGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
           VG+  GSKL+KAQ++  +KI+ EE+F+ L  +++
Sbjct: 561 VGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 594


>gi|288870885|ref|ZP_06115627.2| DNA ligase, NAD-dependent [Clostridium hathewayi DSM 13479]
 gi|288865557|gb|EFC97855.1| DNA ligase, NAD-dependent [Clostridium hathewayi DSM 13479]
          Length = 645

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/690 (24%), Positives = 293/690 (42%), Gaps = 63/690 (9%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YYQ S+ I+ + EYD L      +               P   +G E+   L K  H  P
Sbjct: 15  YYQESREIMSNYEYDKLYDELAELEKE----TGVVLSKSPTQSVGYEVLSELPKERHESP 70

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+K  +  DL++++                  L  K+DG  + + Y  G    A  R
Sbjct: 71  MLSLDKTKSTADLQEWL------------GDQTGILSWKLDGLTVVLTYSGGTLKKAVTR 118

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           G+G  GE +++  R    +P  ++++    + +RGE  I  ++F  +N+ +  V    Y 
Sbjct: 119 GNGEIGEVITSNARVFANVP--VTISFQGELVLRGEAVIRYSEFNRINEAIDDV-DARYK 175

Query: 215 NPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           NPRN  SG +R+LN      R +NF    L     +      +   +            R
Sbjct: 176 NPRNLCSGSVRQLNSQITAERNVNFEAFALVTAEGVDFNNSRKEQFEWLKRQGFDVVEYR 235

Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
                  +           S      DGLV  +D+ +  + LG  A+ PR  I+ K+A++
Sbjct: 236 TVTADT-LPEAVEAFAEAVSGYDIPSDGLVLLLDDIAYGESLGRTAKFPRNAIAFKWADE 294

Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393
              T+L  I+    RTG++ PVA  +PV + G  ++ A++HN   ++ L           
Sbjct: 295 IRETKLQYIEWSPSRTGLINPVAVFDPVELEGTTVSRASVHNLSIMESLA---------- 344

Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453
            +  GD + V +A  +IP++ D +       +     P  CP+C  R             
Sbjct: 345 -LGEGDAITVYKANMIIPQIADNLTR-----SGKIQIPEKCPVCGGRT-----EVRQAGD 393

Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513
                     C A++++    FVSRDA NI+GL +  L+ F      A  I+  ADIF L
Sbjct: 394 VRSLYCTNPDCQAKRIKSFSLFVSRDALNIDGLSEATLEKFI----GAGFIKEFADIFHL 449

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
            R ++     I  + GFG  S  NL  +     + +L R ++ LGI  +G   A+ L + 
Sbjct: 450 DRYEE----TITQMEGFGQKSYDNLIRATEAASHTTLARMVYGLGISGIGLANAKMLCRK 505

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           +           +     +     L+ V  +G ++A A + ++ + +N   V+ LL E++
Sbjct: 506 FK---------FDFDRMRHATAEELVEVDGIGAVLADAWIRYFADEKNQETVDHLLSELT 556

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
                     +   E    V TG+++    R++ +E +   G   +  ++ KT  +I  D
Sbjct: 557 FEQEEESAEEAVF-EGMTFVITGSVEHFANRNELKEAIEARGGKATGSVTSKTTYLINND 615

Query: 693 --NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +  SK +KA+ LGV I++EE+F+ +L +
Sbjct: 616 VTSNSSKNKKAKDLGVPIISEEEFIKMLGE 645


>gi|254523079|ref|ZP_05135134.1| DNA ligase, NAD-dependent [Stenotrophomonas sp. SKA14]
 gi|219720670|gb|EED39195.1| DNA ligase, NAD-dependent [Stenotrophomonas sp. SKA14]
          Length = 821

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 226/674 (33%), Positives = 350/674 (51%), Gaps = 91/674 (13%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            +    L ++I+  +  Y++   P I D +YD + R  +A+    P+LAR+   + P  +
Sbjct: 6   AERAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARA---DSPTQQ 62

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   +    +V H++P LSL   ++ E++  F+ RI     ++   S+ F+ EPK+DG 
Sbjct: 63  VGARPSGRFPEVRHAVPMLSLSNAFSDEEVADFVRRIDERLGRR---SLQFSAEPKMDGL 119

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196
            I++RYE+G FV  A RGDG +GEDV+A +R I  IP+ L   + P+++EVRGEVY+++ 
Sbjct: 120 AISLRYEEGHFVLGATRGDGSTGEDVTANLREIGDIPKRLHGKDWPDVLEVRGEVYMARA 179

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS-EIFAKGQ 254
           DF A N+     G K  ANPRNAA+G LR+L+P     R L+FF +G G+          
Sbjct: 180 DFEAYNERARQQGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGGELPDTH 239

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
              L ++   GFPV+   +      G++ YY ++   R  LP+DIDG+VYK+D+ + Q+ 
Sbjct: 240 SGTLAQLGAWGFPVSGLCKVVEGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDDRAGQQA 299

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           +G  +R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL PV + G +++NATLH
Sbjct: 300 MGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLH 359

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N D I  L           D+RVGD V+V+RAG+VIP+VV +I++ R P   P+  P+ C
Sbjct: 360 NADQIARL-----------DVRVGDSVIVRRAGDVIPEVVSVILDRRPPGTTPWQMPTRC 408

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C S +VR+         AA RC+G L+C AQ+ E + HF SR A +I+GLG + ++  
Sbjct: 409 PVCGSEIVREEG------AAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGDKYIETL 462

Query: 495 FKSEDPAFSIRIPADIFTLQRRQ------------------------------------- 517
                 A  ++  AD++ L R Q                                     
Sbjct: 463 VD----AGIVKSVADLYRLNRDQLLHLKLVLDAEDPSALAAALKLHLPAEGSGAVLNAVL 518

Query: 518 --------------QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
                             +   N          NL  +I+  R  +LER +F+LGI HVG
Sbjct: 519 KLDGNDPGWRTQALVQPASFEWNTKKIATKWADNLIAAIDASRAATLERLLFALGIEHVG 578

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
              A++LA+++   +                W    RVP +G  +A+++  F++   N  
Sbjct: 579 ESTAKALAQWFGDLELIRHLP----------WPLFKRVPDIGGEVARSLGHFFEQQGNQQ 628

Query: 624 AVEALLKEVSPSIG 637
           A++ LLK     I 
Sbjct: 629 AIDDLLKVGQVRIS 642



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 4/148 (2%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV---EALLKEVSP 634
           +     +    A  + +    +    + D  A+ + E+     +   +   E  ++ +  
Sbjct: 675 EKLVAALPGAQAVLDAEHGQFVN-AGLPDDTARGLAEWLDAEGHGAMLLAAEKAMQLILA 733

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
                 + V+  ++ + +V TGTL ++ R  A+E +  LGA VS  +S+KT  ++ G   
Sbjct: 734 KAPALAEIVAGPLDGQTVVLTGTLAQLTRDAAKERLEALGAKVSGSVSKKTSFVVAGAEA 793

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           GSKL+KAQ LGV + +E++ L  L ++ 
Sbjct: 794 GSKLDKAQSLGVPVWDEDRLLAYLAEHE 821


>gi|71894578|ref|YP_278686.1| DNA ligase [Mycoplasma synoviae 53]
 gi|123734274|sp|Q4A5J6|DNLJ_MYCS5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71851366|gb|AAZ43975.1| DNA ligase [Mycoplasma synoviae 53]
          Length = 697

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 187/743 (25%), Positives = 329/743 (44%), Gaps = 77/743 (10%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S +Q ++++ SL   + + +  YY    P + D  YD+L      +   +P L      
Sbjct: 1   MSNQQIKEKIISLNNYLKHLNHLYYDLDAPEVDDKTYDSLYNELLELEAKYPSLVL---E 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           +     IG  ++    K  H+   LSL+K +   ++  F      F Q K+  +  F+LE
Sbjct: 58  DSVTKIIGAFVSNKFKKTKHNKEMLSLDKAYKESEIFSFYE---NFTQYKNLENFGFSLE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I+I Y+ GKF+ A  RGDG +GEDVS  +  I  +P    ++  + +EVRGE+
Sbjct: 115 PKIDGLSISIHYDNGKFIKAITRGDGTTGEDVSENVFQIRDVP--KQISYLKPLEVRGEI 172

Query: 192 YISKNDFL----------------------------ALNDEMIAVGRKPYANPRNAASGI 223
           Y+ K+ +                                  +       + N RNAA+G 
Sbjct: 173 YMKKSTWKSLNEDIKNQYFQTNIEKIFSYMQALPKSKSWSNLKIKTPIFFKNARNAAAGT 232

Query: 224 LRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282
           LR+ +P    +R L+   + +    E   K Q E+L  ++   F VN   + A     I+
Sbjct: 233 LRQKDPKIVKSRNLSSLFYEIVSPLEHNLKTQMEVLAFLKEQNFEVNEFQKLAKNDQEIM 292

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342
              NE   I++   +D DG V K +     +Q+G  ++ P+W I++K+  ++A+T++L+I
Sbjct: 293 FEINEFSKIKNNFEFDCDGFVIKFNLIDKWEQIGFTSKFPKWAIAYKYMLEEANTKILNI 352

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
             Q+GRTG +T +A+  PV +    + NATLHN ++IK             +I +GD + 
Sbjct: 353 VAQVGRTGNITYIAQFMPVELNNTTVQNATLHNYEFIKK-----------NNINIGDEIT 401

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           + ++GE+IPKV+ I           F     CP C S +               +     
Sbjct: 402 IIKSGEIIPKVISIYKKNTDS---VFEKVLNCPSCNSLLEIPEGY-------VDQFCRNE 451

Query: 463 ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR-QQTST 521
            C  ++++ L  FVS++  NI  L  Q +  F+    P   +R   DIF L+    +   
Sbjct: 452 NCDEKKIQMLTFFVSKNCLNITNLSVQNIRIFYNH--PVIQMREIQDIFLLKNHVDEIKK 509

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
            K        +  + N+  SI K ++  L   + +LGI+ +G   A  L        +  
Sbjct: 510 IKFFAGKSQENKKINNILQSIEKAKDAYLRNVLAALGIKGIGNIAANLLTNKITKLSDLN 569

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
              +            L+ +   G+   + + EF  + +N   ++ L + ++        
Sbjct: 570 NLTD----------EDLLSIDTFGEKSIENLKEFLSSEKNQDLIKFLDENLN----YLNS 615

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEK 700
             SS++ N     TG+L  I R + ++ +   G + S  +S+ T  +I      S K++K
Sbjct: 616 KKSSKLNNLNFAITGSLS-ISRDEFKKIILDNGGIFSNSVSKNTSYLISNSKENSTKIKK 674

Query: 701 AQQLGVKIMNEEQFLFLLQQYNT 723
           A +  +K++ EE+F  LL++ N 
Sbjct: 675 ALENNIKVITEEEFHNLLKEENA 697


>gi|321309600|ref|YP_004191929.1| DNA ligase [Mycoplasma haemofelis str. Langford 1]
 gi|319801444|emb|CBY92090.1| DNA ligase [Mycoplasma haemofelis str. Langford 1]
          Length = 662

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 182/705 (25%), Positives = 323/705 (45%), Gaps = 53/705 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++ + +L +E+   ++ YY    P   D  YD   R    + H +P+       + P N
Sbjct: 3   IKEIIENLRKELKDLEEAYYAGD-PKESDEVYDFKLRTLLNLEHKYPEYK---TEDSPSN 58

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++G  +N    KV H  P LSL   +N E+L+ F  +  +     +   + + LEPK+DG
Sbjct: 59  RVGFYLNPENIKVHHDFPMLSLNNAFNNEELQSFFNQCEK-----ERGELEYFLEPKVDG 113

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ Y KG    A  RGDG  GED+++ I  I +IP    +   + I +RGE+YI K+
Sbjct: 114 ASISLIYRKGYLHQAISRGDGEIGEDLTSKILQINSIPIK--IESEDDITIRGEIYIRKS 171

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQY 255
           +F            K +AN RN  +G LR     +I++  L    + + +  E+    Q 
Sbjct: 172 NFE--AQRYDESSSKSFANHRNFVAGTLRLKKSEEISKKGLRVKAYSIVRAEEVGIDKQS 229

Query: 256 EMLQKMRCLGFPVNNGVR--QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           ++++++R LG   ++      +     I S+    + I+ T     DGLV KV+E S  +
Sbjct: 230 QIIERIRELGLESHDPKETLISGNKEEIYSFIKAFEDIKKTSDIPYDGLVIKVNETSKWE 289

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            +G  ++ P+W I++K+      ++LL I   +GRTG +T  A++EPV + G+ +  ATL
Sbjct: 290 DIGYTSKFPKWAIAYKYPSLVKESKLLKIIPTVGRTGKITYSAQVEPVELDGSTVQFATL 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN +YI  L           D+RVGD V + ++GE++P+++      R  D + +   + 
Sbjct: 350 HNANYITEL-----------DLRVGDYVSIYKSGEIVPRIIGFSRERRSEDLERWIPSTH 398

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S ++   N  T       +      C  ++  +  +F +R   NIEGL    +  
Sbjct: 399 CPSCNSELITKQNLST-------QYCPNKDCLEKKYAQFTYFSARGMANIEGLSIHIIMK 451

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                     ++   DI+ + + + T            +  +  L  SI+K RN    + 
Sbjct: 452 LHS----LGILQNLDDIYKIHQHRDTILNADL---RIKEKLLNKLIASIDKSRNRESHKI 504

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +  LGI  +G E+A  +  ++ S                     L+ +  +G+  A++I+
Sbjct: 505 LCGLGIEFIGEEVANLIFGHFGSIDEVLSASK----------EELMSIDGIGEKCAESII 554

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           ++     NI  V+ L ++         + ++S +  K++V TG   KI R +    +   
Sbjct: 555 QWSSQQENIDLVKRLKEQGLFKNHSTFEVINSFVRGKRVVITGKF-KISREELSSRLRNN 613

Query: 674 -GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            G  +   +S K D +I G+  GSKL KA+ L ++I+ E     L
Sbjct: 614 YGVKIVGNISSKVDYLIAGEGAGSKLIKAKDLNIQILTESDITQL 658


>gi|34499358|ref|NP_903573.1| DNA ligase [Chromobacterium violaceum ATCC 12472]
 gi|81654398|sp|Q7NR81|DNLJ_CHRVO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|34105208|gb|AAQ61564.1| DNA ligase [Chromobacterium violaceum ATCC 12472]
          Length = 821

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 215/667 (32%), Positives = 340/667 (50%), Gaps = 80/667 (11%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++  +     + L + ++ +   YY    P + D+EYD L R   A+  A P+LA S   
Sbjct: 19  MTANEL--RAAELRELLNRYGHEYYVLDAPTVPDAEYDRLFRELQALEEAHPELAVS--- 73

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI----------EDLRKFITRIYRFWQKK 121
           + P  ++GG        V H++P LSL   ++            +L +F  R+ +     
Sbjct: 74  DSPTRRVGGAPLDEFVSVVHAVPMLSLSNAFSDMQLTDPAERHSELIQFDERVRKGL--- 130

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-N 180
           D   + +  EPK DG  I++ YE G    AA RGDG +GE V+  +R I  IP  L   N
Sbjct: 131 DAAEVEYATEPKFDGLAISLLYENGVLTRAATRGDGVAGEQVTENVRTIRAIPLKLDGAN 190

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239
            P ++EVRGEV + K DF  LN + IA G K +ANPRNAA+G LR+L+      R L+FF
Sbjct: 191 PPALLEVRGEVLMLKRDFERLNADQIARGDKTFANPRNAAAGSLRQLDSRITAQRRLSFF 250

Query: 240 VHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNG--VRQANTFHGIVSYYNEMKSIRSTLP 296
            + + +     +       +  ++ LGFPV         +   G+  YY  + + R+ LP
Sbjct: 251 AYSIAQVGGADWPATHAGEMAWLKTLGFPVVMDSLRPVVSGAAGLAGYYEAVLTARAGLP 310

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           ++IDG+VYKV+    Q+ LG  +R+PRW I+HKF  ++A T +  I+ Q+GRTG +TPVA
Sbjct: 311 FEIDGVVYKVNRRDQQEALGFVSRAPRWAIAHKFPAEEALTCVEAIEEQVGRTGAITPVA 370

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
           RL+PV +GG  +TNATLHNED ++            +D+RVGD V+V+RAG+VIP+VV +
Sbjct: 371 RLKPVFVGGVTVTNATLHNEDEVRR-----------KDVRVGDTVVVRRAGDVIPEVVSV 419

Query: 417 IVNERH---------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461
           ++ +R                P    +  P+ CP+C S VVR+         A  RC+GG
Sbjct: 420 VLAQRPMQPAEGGDLFSAGEEPRYPAYRLPTACPVCGSHVVREEGE------AIARCSGG 473

Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
           L+C AQ+ + ++HF  R   +I+GLG++ +D   +       ++  AD++ L+       
Sbjct: 474 LSCRAQRSQAIQHFAGRRMMDIDGLGERYIDKLVEY----GYVQGVADLYRLKLEDLLEM 529

Query: 522 TKIENIL-----------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
            +  +                     NL ++I+  R   L R +F+LGIRHVG   A++L
Sbjct: 530 KRRADEDEGVTPETVKAGKVASKWAENLIEAIDASRAPPLARLLFALGIRHVGESTAKTL 589

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
           A +  +     +    + A           +P +G ++A ++ +F+    N  A++ALL 
Sbjct: 590 ADWLGTMALIRRCPAALFA----------ALPDIGGVVADSLADFFAEDNNEKALDALLA 639

Query: 631 EVSPSIG 637
           EV P+  
Sbjct: 640 EVKPADE 646



 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 3/116 (2%)

Query: 607 IIAQAIVEFYQNPRNICAVEAL---LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            +  A+ ++   P    A+ +L     E+  S+    +  +  +E K LV TGTL  + R
Sbjct: 704 EVVNALADWLDEPGRRAALASLAGLRDEILASLPAAAEAAALPLEGKTLVLTGTLPTLSR 763

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +A+  +   G  VS  +S+KT  ++ G+  G KL KAQ+LGV I++E     LL 
Sbjct: 764 DQAKALIEAAGGKVSGSVSKKTHYVVAGEEAGGKLAKAQELGVAILDEAGLQALLA 819


>gi|148377548|ref|YP_001256424.1| DNA ligase [Mycoplasma agalactiae PG2]
 gi|254781374|sp|A5IY71|DNLJ_MYCAP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148291594|emb|CAL58980.1| DNA ligase [Mycoplasma agalactiae PG2]
          Length = 654

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 206/709 (29%), Positives = 347/709 (48%), Gaps = 55/709 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  E+A++ + SL ++I+  +  YYQ +KP + D EYD      + +    PDL  S   
Sbjct: 1   MQKEEAKELIKSLVEKINQWNYEYYQLNKPSVSDLEYDKALLELEKLEKEHPDLILS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  +IG   +    K  +  P LSL K +N +D+  FI  I +        +I F +E
Sbjct: 58  NSPTFRIGSFASEKFTKFVYQKPMLSLAKAYNYDDINSFINNISKIV---PTENINFNIE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I +RY++GK V AA RGDG  GEDV+  I  I +IP    +N    +EVRGEV
Sbjct: 115 PKIDGLSIALRYKQGKLVKAATRGDGSEGEDVTENIYQIKSIP--KLINYFNDLEVRGEV 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           +I+KNDF  +N+       +  A     +  + +        R L+ F++ + +  +   
Sbjct: 173 FITKNDFKKINESNNFANARNAA-----SGTLRQLDANIVAERNLSAFLYEIVEPEKHGI 227

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q+E L+ M+ L FP N   +       +    ++   I++ L YD DGLV K+++  +
Sbjct: 228 YYQHEALEFMKNLDFPTNPFSKV-VEIEELEESISDFAEIKNKLDYDADGLVIKLNDLQM 286

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
             +LG+ ++ P+  I+ K+  + AS+R+ DI   +GRTG +T +A + PV +    +  A
Sbjct: 287 WDKLGKTSKFPKHSIAFKYDVEVASSRITDILTSVGRTGKITYIANILPVLLNQTTVKAA 346

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN ++IK +           +I + D V + +AGE+IPKV+ +   + + D   +   
Sbjct: 347 TLHNHNFIKDM-----------NININDEVNIIKAGEIIPKVISLKEEKNYVD--YYKKA 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S++V              +      C  + +  + HF SR+  NI GLG   +
Sbjct: 394 TNCPSCGSQLVEFEG-------IVDQFCTNDECPDKNINNIYHFASRNCLNIVGLGLSTV 446

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             F+        I+   DIF L + +     ++  +  + D+ V N+ +SI   +N    
Sbjct: 447 KDFYPK-----FIKNIKDIFDLHKYRA----ELIKLPRYRDLKVDNILNSIESAKNKKFS 497

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + IF+LGI+H+G   A+ +A  Y ++     +          + L L     +G  I ++
Sbjct: 498 KVIFALGIKHIGQRAAKLIADNYANFAELLDD---------HNLLKLQNTKNIGPKIIES 548

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           ++EF  +P N   +  L      +     K +S+ +     V TG L +  R    + + 
Sbjct: 549 LIEFISSPANQDLLAFLDAI--FNYEGKAKVISTILSGYTFVITGVLSE-PRSHFVKLIE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +    VS+ +S KT  ++ G + GSKLEKA + G K++NEEQF  L++Q
Sbjct: 606 EHSGNVSSAISSKTSYLLAGSDAGSKLEKAYKTGTKVINEEQFYDLIKQ 654


>gi|229825369|ref|ZP_04451438.1| hypothetical protein GCWU000182_00723 [Abiotrophia defectiva ATCC
           49176]
 gi|229790373|gb|EEP26487.1| hypothetical protein GCWU000182_00723 [Abiotrophia defectiva ATCC
           49176]
          Length = 664

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 196/725 (27%), Positives = 325/725 (44%), Gaps = 73/725 (10%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + I   ++ +  L   +      YY  S  I+ ++EYD L    +A+ +           
Sbjct: 1   MDINSKKQRMKELIDVLDKAAKAYYAESTEIMSNAEYDKLYDELEALENE----TGIVLA 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                K+G E+  SL K  H  P LSL K  ++ +L  F+                  L 
Sbjct: 57  GSLTKKVGYEVLSSLPKKAHKEPRLSLSKTKDVGELASFL------------GDKEGILM 104

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  I + YE G+ V A  RG+G  GE V+   R    IP  L +     + VRGE 
Sbjct: 105 WKLDGLTIVLTYENGELVEALTRGNGEIGEVVTENARFFENIP--LVIPYKGSLMVRGEA 162

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            I  +DF  +N+E+  V    Y NPRN  SG +R+L+      R +NF V+   +     
Sbjct: 163 IIKYSDFNRINEEITDVAE-KYKNPRNLCSGSVRQLSTEVTAKRNVNFIVYEDLEG-GEK 220

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            K + E L  +  LGF V +                E ++   T     DGLV + ++ +
Sbjct: 221 FKTREEELNYLESLGFTVVDHPLVNRDNLE--KEVREYENRIKTSDLPSDGLVLQFNDIA 278

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
               LG  ++ PR  I+ K+ ++ A T L +I+    RTG++ PVA  + V + G  +T 
Sbjct: 279 YGNSLGRTSKFPRHSIAFKWKDETAETTLREIEWSASRTGLINPVAIFDAVELEGTTVTR 338

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A++HN   ++ L            + VGDR+ V +A  +IP++++ +             
Sbjct: 339 ASVHNVSIMRSL-----------KLGVGDRIKVYKANMIIPQILENLTESNAE-----EV 382

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+C  +          +            C A++L+ L HFVSRDA NI GL +  
Sbjct: 383 PTVCPVCGGKT-----ELKDEEGVQTLYCTNPDCMAKRLKLLTHFVSRDAMNIAGLSEMT 437

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           L+ F         I   +D+F L   ++    KI  + GFG+ S  NL +S++K R  + 
Sbjct: 438 LEKFVAEN----MIHELSDVFKLANHKE----KIVTMEGFGERSYNNLIESLDKARETTA 489

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            R ++SLGI ++G   A+ + +Y+ +         +           L ++  +G+++A+
Sbjct: 490 VRILYSLGIANIGLATAKLICRYFNN---------DFDKIIKAKEEELTQIDGIGEVMAK 540

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH-------EKNVSSEIENKKLVFTGTLQKIQ- 662
              E++    NI  +E LL EV              +  V++ I     V TG ++K + 
Sbjct: 541 VFAEYFNKDENIKTLEHLLAEVHIEKSAENDQNTEGDDEVNNAIAGLTFVITGDVEKFKN 600

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGD---NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R +  E++   G  V+  ++ KT+ +I  D   N G K +KA++LGVKI++E +FL L+ 
Sbjct: 601 RRELSEFIESKGGKVTGSVTGKTNYLINNDVTSNSG-KNKKAKELGVKIISENEFLELVG 659

Query: 720 QYNTT 724
             N  
Sbjct: 660 GNNAN 664


>gi|190575033|ref|YP_001972878.1| NAD-dependent DNA ligase LigA [Stenotrophomonas maltophilia K279a]
 gi|254781423|sp|B2FKJ1|DNLJ_STRMK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190012955|emb|CAQ46587.1| putative DNA ligase [Stenotrophomonas maltophilia K279a]
          Length = 821

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 225/680 (33%), Positives = 349/680 (51%), Gaps = 92/680 (13%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S   A +    L ++I+  +  Y++   P I D +YD + R  +A+    P+LAR+   
Sbjct: 1   MSPSPA-ERAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARA--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G   +    +V H++P LSL   ++ E++  F+ RI     ++   S+ F+ E
Sbjct: 57  DSPTQQVGARPSGRFPEVRHAVPMLSLSNAFSDEEVADFVRRIDERLGRR---SLRFSAE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PK+DG  I++RYE G FV  A RGDG +GEDV+A +R I  IP+ L   + P+++EVRGE
Sbjct: 114 PKMDGLAISLRYEDGHFVLGATRGDGSTGEDVTANLREIGDIPKRLHGKDWPDVLEVRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS-E 248
           VY+++ DF A N+     G K  ANPRNAA+G LR+L+P     R L+FF +G G+    
Sbjct: 174 VYMARADFEAYNERARLQGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGG 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                    L ++   GFPV+   +      G++ YY  +   R  LP+DIDG+VYK+D+
Sbjct: 234 ELPDTHSGTLAQLGAWGFPVSELCKVVEGTDGLLGYYRTIGERRDGLPFDIDGVVYKLDD 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q+ +G  +R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL PV + G ++
Sbjct: 294 RAGQQAMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L           D+RVGD V+V+RAG+VIP+VV +I++ R     P+
Sbjct: 354 SNATLHNADQIARL-----------DVRVGDSVIVRRAGDVIPEVVSVILDRRPQGTTPW 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP+C S +VR+         AA RC+G L+C AQ+ E + HF SR A +I+GLG 
Sbjct: 403 QMPTRCPVCGSEIVREEG------AAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGD 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRR-------------------------------- 516
           + ++        A  ++  AD++ L R                                 
Sbjct: 457 KYIETLVD----AGIVKSVADLYRLSRDTLLHLKLVLDAEEPSALAAALKLHLPAEGSGA 512

Query: 517 -------------------QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                                   +   N          NL  +I+  R  +LER +F+L
Sbjct: 513 VLNAVLKLDGNDPGWRAQALAQPASFEWNTKKIATKWADNLIAAIDASRAATLERVLFAL 572

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI HVG   A++LA+++   +                W    RVP +G  +A+++  F++
Sbjct: 573 GIEHVGESTAKALAQWFGDLELIRHLP----------WPLFKRVPDIGGEVARSLGHFFE 622

Query: 618 NPRNICAVEALLKEVSPSIG 637
              N  A++ LL+     I 
Sbjct: 623 QQGNQQAIDDLLQVGQVRIA 642



 Score =  153 bits (386), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 4/148 (2%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV---EALLKEVSP 634
           +     +    A  + +    +    + D  A+ + E+     +   +   E  ++E+  
Sbjct: 675 EKLVAALPGAQAVLDAEHGQFVN-AGLPDDTARGLAEWLDADGHGAMLLAAENAMREILA 733

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
                 + V+  ++ + +V TGTL ++ R  A+E +  LGA VS  +S+KT  ++ G   
Sbjct: 734 KAPALAEIVAGPLDGQTVVLTGTLAQLTRDAAKERLEALGAKVSGSVSKKTSFVVAGTEA 793

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           GSKL+KAQ LGV + +E++ L  L ++ 
Sbjct: 794 GSKLDKAQSLGVSVWDEDRLLAYLAEHE 821


>gi|194366356|ref|YP_002028966.1| NAD-dependent DNA ligase LigA [Stenotrophomonas maltophilia R551-3]
 gi|254781422|sp|B4SP88|DNLJ_STRM5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194349160|gb|ACF52283.1| DNA ligase, NAD-dependent [Stenotrophomonas maltophilia R551-3]
          Length = 821

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 227/680 (33%), Positives = 354/680 (52%), Gaps = 92/680 (13%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S   A +    L ++I+  +  Y++   P I D +YD + R  +A+    P+LAR+   
Sbjct: 1   MSPSPA-ERAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARA--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G   +    +V H++P LSL   ++ E++  F+ RI     ++   S+ F+ E
Sbjct: 57  DSPTQQVGARPSGRFAEVRHAVPMLSLSNAFSDEEVADFVRRIDERLGRR---SLQFSAE 113

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190
           PK+DG  I++RYE+G FV  A RGDG +GEDV+A +R I  IP+ L+  + P+++EVRGE
Sbjct: 114 PKMDGLAISLRYEEGHFVLGATRGDGSTGEDVTANLREIGDIPKRLNGKDWPDVLEVRGE 173

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS-E 248
           VY+++ DF A N+     G K  ANPRNAA+G LR+L+P     R L+FF +G G+    
Sbjct: 174 VYMARADFEAYNERARLQGGKVLANPRNAAAGSLRQLDPKISAQRKLSFFAYGTGEVQGG 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                    L ++   GFPV+   R  +   G++ YY ++   R  LP+DIDG+VYK+D+
Sbjct: 234 ELPDTHSGTLAQLGSWGFPVSALCRVVDGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDD 293

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q+ +G  +R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL PV + G ++
Sbjct: 294 RAGQQAMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIV 353

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I  L           D+RVGD V+V+RAG+VIP+VV +I++ R     P+
Sbjct: 354 SNATLHNADQIARL-----------DVRVGDSVIVRRAGDVIPEVVSVILDRRPQGTTPW 402

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P+ CP+C S +VR+         AA RC+G L+C AQ+ E + HF SR A +I+GLG 
Sbjct: 403 QMPTQCPVCGSEIVREEG------AAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGD 456

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQ------------------------------- 517
           + ++        A  ++  AD++ L R Q                               
Sbjct: 457 KYIETLVD----AGIVKGVADLYRLSRDQLLHLKLVLDAEDPSALAAALKLHLPAEGSGA 512

Query: 518 --------------------QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                                   +   N          NL  +I+  R  +LER +F+L
Sbjct: 513 VLNAVLKLDGNDPGWRAQALVQPASFEWNTKKIATKWADNLIAAIDASRAATLERLLFAL 572

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI HVG   A++LA+++   +                W    RVP +G  +A+++  F++
Sbjct: 573 GIEHVGESTAKALAQWFGDLELIRHLP----------WPLFKRVPDIGGEVARSLGHFFE 622

Query: 618 NPRNICAVEALLKEVSPSIG 637
              N  A++ LL+     I 
Sbjct: 623 QQGNQQAIDDLLQVGQVRIS 642



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 73/148 (49%), Gaps = 4/148 (2%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV---EALLKEVSP 634
           +     + +  A  + +    +    + D  A+ + E+     +   +   E  ++++  
Sbjct: 675 EKLVAALPSAQAVLDAEHGQFVN-AGLPDDTARGLAEWLDAEGHGAMLLAAEKAMRQILA 733

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
                 + V+  ++ + +V TGTL ++ R  A+E +  LGA VS  +S+KT  ++ G   
Sbjct: 734 KAPALAEIVAGPLDGQTVVLTGTLAQLTRDAAKERLEALGAKVSGSVSKKTSFVVAGTEA 793

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           GSKL+KAQ LGV + +E++ L  L ++ 
Sbjct: 794 GSKLDKAQSLGVPVWDEDRLLAYLAEHE 821


>gi|271965050|ref|YP_003339246.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021]
 gi|270508225|gb|ACZ86503.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021]
          Length = 696

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 192/717 (26%), Positives = 306/717 (42%), Gaps = 87/717 (12%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI-GGEMNLSLFKVTHSI 93
           YY      + D  YD L R   A     PD      P  P  K+ GG +      V H++
Sbjct: 30  YYGDGTSTLDDDAYDRLVRGIQAYEAEHPDEVL---PTSPTGKVAGGAVVGD---VPHTV 83

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
           P LSL+ ++    L  +   + R   +       +++EPK+DG  I  RY  G+ V    
Sbjct: 84  PMLSLDNVFGAGQLADWAASLERRLGRPV---TEWSVEPKLDGLAIAARYRGGRLVQLVT 140

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           RGDG +GEDVS  I  I  +P  L+  +   +E+RGEV ++ + F     +  A     +
Sbjct: 141 RGDGTAGEDVSHAIGTIVGLPARLAEPV--TVELRGEVMMTASQFEDACVKRQAHDGTTF 198

Query: 214 ANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS-------EIFAKGQYEMLQKMRCLGF 266
           ANPR+AA+G LR  +   +     F    L           ++      E++  +   G 
Sbjct: 199 ANPRSAAAGTLRAQDRPYVCELTFFGYGALPYPDDTSEQAVQLRELPHSEVMTWVAGQGV 258

Query: 267 PVNNGV----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
                       A T   I     ++ + R+ LP+ IDG+V K D  + Q Q G  +R+P
Sbjct: 259 QTPAVTDVGGIVATTLEQIQERVEQIAAKRTELPFGIDGIVIKCDLAADQAQAGFSSRAP 318

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           RW I++K    +  T+LL ++   GR+GI+ P A LEPV + G+++T ATLHN   I   
Sbjct: 319 RWAIAYKLPATEKITKLLGVEWNTGRSGIIAPRAVLEPVELDGSIVTYATLHNVADITR- 377

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                     R + +GD V+V +AG+VIP+V   +V+ R  D QP + P  CP C   + 
Sbjct: 378 ----------RGLMLGDSVVVYKAGDVIPRVEAPVVHLRTGDEQPIAIPQVCPTCGDAID 427

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
                         RC  G AC  + +  + +   RD  +IEGL + ++         A 
Sbjct: 428 --------ASQERWRCVRGRAC--RVIASIGYAAGRDQLDIEGLAENRIQQLLD----AG 473

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            I   AD+F L R Q         +   G  S  NL  +I + +   L R   +LG+R  
Sbjct: 474 LIVDFADLFYLTREQVLG------LERMGATSTDNLLAAIERAKAQPLSRVFCALGVRGT 527

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G  ++R +A+++ S                 D  ++  V  +G   A  +V         
Sbjct: 528 GRSMSRRIARHFGSMDAIRAA----------DAEAIEAVEGIGPKKAPGVVAELVELA-- 575

Query: 623 CAVEALLKEVSPSIGRHEK-----------------NVSSEIENKKLVFTGT----LQKI 661
             ++ L+K                                 +    +V TG     L+ +
Sbjct: 576 DLIDKLVKAGVTMTEPGWTPPAEPGADAQADPEAGGTSGLPLAGMSVVVTGAMSGALEAL 635

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R++  E + + G   S+ +S KT +++ G+  GSK  KA+ LGV+I+  E+F  L+
Sbjct: 636 TRNEMNELIERAGGKASSSVSAKTSLLVAGEKAGSKRAKAESLGVRIVGPEEFAGLV 692


>gi|187928361|ref|YP_001898848.1| DNA ligase [Ralstonia pickettii 12J]
 gi|254781397|sp|B2UB00|DNLJ_RALPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|187725251|gb|ACD26416.1| DNA ligase, NAD-dependent [Ralstonia pickettii 12J]
          Length = 817

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 227/679 (33%), Positives = 344/679 (50%), Gaps = 69/679 (10%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K +       S ++     + L  E++ +   YY   +P + D EYD L R  +A+  
Sbjct: 1   MSKTEEPASGPPSKDRPEARAAWLRAELNRYAHEYYVLDQPSVPDVEYDRLYRELEALET 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI--EDLRKFITRIYRFW 118
             P+L     P+ P  ++GG +      V H IP LS+    +      R F   + R  
Sbjct: 61  EHPELK---TPDSPTLRVGGAVLPEFAAVRHVIPMLSIRTETDTTANGARAFDASVRREL 117

Query: 119 QKKD-DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP--- 174
              D D  + +  E K DG  I +RYE+G  V AA RGDG +GEDV+  IR I  IP   
Sbjct: 118 GLDDTDPPVEYAAELKFDGLAINLRYERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGL 177

Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR 234
             +  ++P+++EVRGEVY+ ++DF  LN      G K + NPRN A+G +R+L+P     
Sbjct: 178 SPVDGHVPDVLEVRGEVYMRRDDFEKLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAE 237

Query: 235 YL-NFFVHGLGKT--SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
              +FF +GLG+    +        ML  ++  GFPV+N         G+V ++  +++ 
Sbjct: 238 RPLSFFAYGLGEVAGWKGMPGTHSSMLDVLQAFGFPVSNERAAVAGGEGLVRFHEAIRAK 297

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LP+DIDG+VYKV+  +LQ++LG R+R PRW ++HK+  ++A T +  ID+Q+GRTG 
Sbjct: 298 RDSLPFDIDGVVYKVNSLALQRELGFRSREPRWAVAHKYPAQEALTTVESIDVQVGRTGA 357

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARL PV +GG  +TNATLHNED ++            +D+RVGD V+V+RAG+VIP
Sbjct: 358 ITPVARLVPVFVGGVTVTNATLHNEDEVRR-----------KDVRVGDTVIVRRAGDVIP 406

Query: 412 KVVDIIVNER---------------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456
           +VV ++++ R                P   PF  P  CP+C S VVR+         A  
Sbjct: 407 EVVSVVLDRRPLDDVPGSDLFNPQQQPKYPPFELPKTCPVCGSHVVREEGE------AVA 460

Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516
           RC+GGL CSAQ+ E ++HF  R   +IEGLG++ +D   +       +   AD++ L   
Sbjct: 461 RCSGGLFCSAQRKEAIRHFAGRRMMDIEGLGERYIDNLVE----LDYVHGIADLYKLTLE 516

Query: 517 QQTSTTKIENIL-----------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
                 +  +                     NL + I   +   L RF+F+LGIRHVG  
Sbjct: 517 DFLEMKRRADERDGVTPETVSAGKIATKWAENLLEGIQASKTPPLARFLFALGIRHVGES 576

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A++LA +  S     +    ++               VG  +A+AI +F+  P+N  A+
Sbjct: 577 TAKTLADWLGSLAMIRRAPAPLLLALP----------DVGATVAEAIADFFAEPKNQQAL 626

Query: 626 EALLKEVSPSIGRHEKNVS 644
           +ALL+      G H  N  
Sbjct: 627 DALLEAGVAPQGEHAPNAK 645



 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 15/166 (9%)

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG+  + A  A+ LA    +    A    + +A    D             +  +++E+ 
Sbjct: 659 LGVPKLTATRAKQLAVAAPTLAQLASVEPDQLAGLPAD-------------VTASLLEWL 705

Query: 617 QNPRNICAVEAL--LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            +  +   +  L  L+    +    E      ++ K +V TGTL  + R +A+  +   G
Sbjct: 706 ASHDHRAQLAKLDALRGELLAAMPAEAAEEGVLDGKTVVLTGTLPNLTRDEAKAMLEAAG 765

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A VS  +S+KTD ++ G++ GSKL KA++L VK+++E   L LL++
Sbjct: 766 AKVSGSVSKKTDYVVAGEDAGSKLAKAEELNVKVLDEAGMLALLKK 811


>gi|82548271|gb|ABB82962.1| NAD-dependent DNA ligase [uncultured organism HF70_19B12]
          Length = 707

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 192/732 (26%), Positives = 315/732 (43%), Gaps = 83/732 (11%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E   L  EI  H + YY Y++P I D+++D L +R   I  + P L           K+G
Sbjct: 10  EADRLASEIQRHSELYYNYAEPEITDAQFDLLIQRLREIDPSNPQL----------EKVG 59

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      KV H  P LSL+K    +++  F+             +  F ++PK+DG+ I
Sbjct: 60  ADPAPGSVKVEHIYPMLSLDKANTPQEIAHFVN-------ITSAATQRFVVQPKLDGSAI 112

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
           ++ Y +G  V A  RG G  GEDV+  +R IP IP    +       VRGEV +  + + 
Sbjct: 113 SLEYRRGMLVRAVTRGSGTRGEDVTRNVRRIPNIPNR--IKWRGNCFVRGEVVMLLDTYR 170

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP---TDITRYLNFFVHGLGKT---------- 246
               E          NPRN A+G LR+ NP         L FF + +             
Sbjct: 171 ENYAE-------VAPNPRNLAAGALRQKNPESGKARAEDLRFFAYDVKFPEGASGEESKA 223

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVS----YYNEMKSIRSTLPYDIDGL 302
              +      +         P    V +A+    ++        E    R  +P++IDGL
Sbjct: 224 PLNYIHDSQILEWLFTMDIQPAGRFVVEADDSDEVIELLISKTEEAIGSREEMPWEIDGL 283

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVDE + +  LGE A  PRW ++ KF  ++A+T ++ +D Q GRTG +TPVAR+ PV 
Sbjct: 284 VIKVDELTKRPLLGETAHHPRWALAWKFPPEEATTVVMSVDWQTGRTGNVTPVARVAPVM 343

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--- 419
           + G  + N TLHN   ++ L            +++GDRV++ R G+VIPK+  +I     
Sbjct: 344 VSGVTVENTTLHNPGEVERL-----------GLKIGDRVMIVRRGDVIPKITKVIGQATG 392

Query: 420 -----ERHPDAQPFSF--PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472
                 RH D  PF    P    +    V            A  +C     C ++ +  +
Sbjct: 393 TDLEGRRHSDGTPFHEALPERIDVEPPSVCPRCGTNLHSEGAFLKC-RNSGCPSRVVRSI 451

Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGD 532
            ++                +        +      AD++ L      S      +   G+
Sbjct: 452 LYWCKSLEI------DGVGEKLANQLVESGLAPELADLYRLSHADVLS------LERMGE 499

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
            S   + D I  +R +SL+ FI SLG+  +G EIA  ++K   + +NF   +N   +   
Sbjct: 500 KSARRVIDQIQSKRKMSLDHFIASLGLPRIGPEIASMISKEIKTIENFRNLVNTWSSGRE 559

Query: 593 DDWL---SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN 649
           +       L+ +  +G+I+A+  ++   +  N   +E L   +  +  + E      +  
Sbjct: 560 ETTDILPRLVAIDGIGEIVARLFLDG--SKSNWSQIEDLSSLLEITPMQTENRSIGPLAG 617

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
             L  TG++ +  R + +  +   G  V + +S + D +I GD  GSKLEKA +L V ++
Sbjct: 618 LTLCITGSMTR-PRKEVELLIRSAGGKVVSSVSSRLDYLIAGDAAGSKLEKATRLQVSVL 676

Query: 710 NEEQFLFLLQQY 721
           NEEQ +  + + 
Sbjct: 677 NEEQLMQKIGKN 688


>gi|28199807|ref|NP_780121.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa Temecula1]
 gi|182682559|ref|YP_001830719.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa M23]
 gi|81438262|sp|Q87A88|DNLJ_XYLFT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254782314|sp|B2I9S4|DNLJ_XYLF2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28057928|gb|AAO29770.1| DNA ligase [Xylella fastidiosa Temecula1]
 gi|182632669|gb|ACB93445.1| DNA ligase, NAD-dependent [Xylella fastidiosa M23]
 gi|307578838|gb|ADN62807.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 831

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 229/690 (33%), Positives = 352/690 (51%), Gaps = 91/690 (13%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +      +  + L + +   +  Y+   +P I D++YD + R  DA+   +PDLA    P
Sbjct: 1   MIPLDPAQRAAELRRRLQEANYHYHVLDQPRIPDADYDRMLRELDALEATYPDLA---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G  +  +  +V H++P LSL   ++  ++ +F+ RI     +       F+ E
Sbjct: 58  DSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITARLGETAPG---FSAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  I++RY+ G F+  A RGDG +GEDV+A +R +PTIP+   S   P ++EVRGE
Sbjct: 115 PKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTVLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249
           VY+ + DF A N +    G K  ANPRN A+G LR+L+      R L+F+ +G+G+ ++ 
Sbjct: 175 VYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGIGEVTDD 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E+L  +R  GFPV+  V       G+++YY  M++IR TLP+DIDG+VYK+D+
Sbjct: 235 VAFHRHSEILASLRAWGFPVSPLVELVYGSEGLLNYYRRMETIRDTLPFDIDGIVYKLDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            S Q ++G  AR+PRW I+HKF  ++ +T +  I+IQIGRTG  TPVARL PV + G  +
Sbjct: 295 LSGQHEMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQVAGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           T+ TLHN D I  L           D+R+GD V+V+RAG+VIP+VV +I + R P A  +
Sbjct: 355 TSVTLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVAVITDSRPPGATAW 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           S P  CP+C S +VR+         A  RC+G LAC AQ+ E ++HFVSR A ++EGLG 
Sbjct: 404 SMPMACPVCGSEIVRETG------AAVWRCSGELACPAQRKEAIRHFVSRRAMDVEGLGV 457

Query: 489 QQLDFFFK--------------------------SEDPAFSIRIPADIFTLQRRQQ---- 518
           + ++                              ++ P   +R   D  T  R QQ    
Sbjct: 458 KCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRYQQLEEI 517

Query: 519 --------------TSTTKIENILGFGD-----------VSVTNLYDSINKRRNISLERF 553
                             +I+ +                    NL  +I++ R  +LERF
Sbjct: 518 LRTVGVDLSGEGDVPKHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAIDRSRQTTLERF 577

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LG+ HVG   A++LA  +       Q    +             VP +G  +A+AI 
Sbjct: 578 LFALGMTHVGETTAKALAHSFGDLAIIRQLPWPLFKC----------VPDIGGEVARAIG 627

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
            F   P N  A++ L++        H    
Sbjct: 628 HFMDQPANQQAIDDLVERGVRITDAHPPTS 657



 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 4/147 (2%)

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSI 636
            A     +      D  +L++   V    AQ++ E++Q+P NI     L      +   +
Sbjct: 685 LATLAPTLPLLAEADLDALLQ-AGVPQPAAQSLTEWFQSPDNISLARRLQHCCDVLLAQL 743

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              ++  ++ +  + +V TG L  + R  A   +  LGA +   +S+KT  ++ G++PGS
Sbjct: 744 LSPDRAHTAPLNGQSVVLTGKLASLTREAAATRLESLGAKIVGSVSKKTSFLVAGEDPGS 803

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           KL+KA  L V I +E + L  L+QY+ 
Sbjct: 804 KLDKAHALHVDIWDEARLLAFLEQYSA 830


>gi|319943831|ref|ZP_08018112.1| DNA ligase [Lautropia mirabilis ATCC 51599]
 gi|319743064|gb|EFV95470.1| DNA ligase [Lautropia mirabilis ATCC 51599]
          Length = 779

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 225/638 (35%), Positives = 337/638 (52%), Gaps = 52/638 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
               R  + +L  E+  H+  YY+   P + DS YD L      +   +P L     P+ 
Sbjct: 20  PADIRARVQTLRAELLAHNRAYYEEDAPTVEDSVYDGLFLELQQLEARWPALL---TPDS 76

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G   +     VTH +P  SL   ++  D+  F  R+       +D    F+  PK
Sbjct: 77  PTQRVGSAPSAGFGTVTHRVPMRSLSNAFSEADVLAFDRRLKSLLGVTED--FAFSATPK 134

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG   T+RYE G+ V  A RGDG +GE+++A +R +  +P  LS   PE++EVRGEV +
Sbjct: 135 LDGLAATLRYEHGRLVQGATRGDGVTGENITANLRTVRGVPAQLSGPAPEVLEVRGEVLM 194

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF-- 250
            K DFLALN    A G K +ANPRNAA+G LR+L+     +R L F+ +G+G+ S+    
Sbjct: 195 LKEDFLALNRAQEARGDKLFANPRNAAAGSLRQLDARVTASRPLTFYAYGIGEVSDPDQV 254

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              Q+ ML  +  LGF    G  +      ++ YY    S+R+TLPY IDG+VY++D+  
Sbjct: 255 PASQHGMLVWLGTLGFLPPPGAERVQGVSALLDYYRHTGSVRATLPYAIDGVVYQLDDRH 314

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+Q G  AR+PR+ ++HK+A ++A T L DI +Q+GRTG+LTPVARLEPV +GG  ++N
Sbjct: 315 LQEQAGFVARAPRFALAHKYAAEEAVTTLQDIFVQVGRTGVLTPVARLEPVFVGGVNVSN 374

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNED ++            + + +GDRV+V+RAG+VIP+VV +++++R  DA+ F  
Sbjct: 375 ATLHNEDEVRR-----------KHLLIGDRVIVRRAGDVIPEVVGVVLDQRPADAREFRM 423

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP+C S V R  +       A  RC GGL CSAQ+   L HF  R A +I+GLG   
Sbjct: 424 PSQCPVCGSAVQRLPSE------ANWRCVGGLFCSAQRKRALWHFAHRRAMDIDGLGDVL 477

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++           +  PAD++ L      +      +   G+ S  NL  +I+  R+ SL
Sbjct: 478 VEQLVD----GNLVHEPADLYRLDAATLQA------LPRMGEKSAANLLAAIDGSRHPSL 527

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR---------- 600
           ERF+F+LGIR VG E AR LA+ +   + F     +      +   +L            
Sbjct: 528 ERFLFALGIRAVGEEAARVLARAFGDLEGFLAA--DWATLLEEKAATLKENERRRSRGER 585

Query: 601 -----VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
                +  +G  I  ++  F     N  ++  L     
Sbjct: 586 PLPVPLDGIGPEIIGSVSAFLGEAHNRDSIAHLRAVGV 623



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 41/74 (55%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
                + +V TGTL+ + R +A+  +  LG   +  +S +T  ++ G+N GSKL KA+ L
Sbjct: 704 QPFAGQSIVVTGTLEHLSRDQAEAMIRALGGKPAGSVSGRTAFVVAGENAGSKLTKARSL 763

Query: 705 GVKIMNEEQFLFLL 718
           G+ ++ E  F   +
Sbjct: 764 GISVLAEADFFNKI 777


>gi|27904570|ref|NP_777696.1| DNA ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|32129495|sp|Q89B02|DNLJ_BUCBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|27903967|gb|AAO26801.1| DNA ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
          Length = 672

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 210/722 (29%), Positives = 350/722 (48%), Gaps = 69/722 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +  +  L+ EI YH   Y+  + P I D +YD L      +        R +  + 
Sbjct: 1   MKDIKNYILKLQDEIRYHAYLYHTLNSPKISDEKYDFLVIELQRLEKKCKYSVRFK--DS 58

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E      K +H  P LSL  ++   D  KF  +I           IFF  E K
Sbjct: 59  PTQSVGSENLPEFKKFSHITPMLSLNNVFIKNDFLKFYKKIVNNI---TVEKIFFCSELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
            DG  I + Y  G    A  RG+G+ GEDV++ +  I ++P+ L   +IPE +EVRGE++
Sbjct: 116 FDGVAINLIYINGLLFRAVTRGNGYEGEDVTSNVNMISSVPKKLIGIDIPETLEVRGEIF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251
           + K+DF  LN  +    +K ++N RNAASG LR  N      R L F+ +G G  S    
Sbjct: 176 MLKSDFKKLNVRLTKFKKKLFSNSRNAASGSLRHKNAKVTELRSLTFYCYGCGYCSYENF 235

Query: 252 KG-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               +  L+K++  GFP+++     +++  I+ +YN +++ R  L ++IDG+V KVD   
Sbjct: 236 TDSHFLRLKKLKSWGFPISDYNFLHSSYDEILRFYNFIQNERYFLNFNIDGIVIKVDSIC 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQK L   +++PRW +++KF++K   T +++I  Q+GRTG++TPVA++ P+ I G LI  
Sbjct: 296 LQKSLSTTSKAPRWAVAYKFSDKIKITTIMNILYQVGRTGVITPVAQVTPIYISGVLIKK 355

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            +LHN + I+ L           ++ +GD V +KR+G+VIP ++++    +    +  S 
Sbjct: 356 VSLHNFNEIRRL-----------NLNIGDSVFIKRSGDVIPHIIEVASKCKLQRNEDISI 404

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P FCP C S++               RC  GL C +Q  + L +F S+   NI GLG + 
Sbjct: 405 PKFCPECGSKLK-----VDSFSNIKIRCMAGLKCLSQFKKLLHYFCSKKGLNILGLGPKI 459

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +D           +   +DIF L      + + +  +   G +   N+  SIN  +N+S 
Sbjct: 460 IDKLVD----LGYVSDLSDIFDL------NVSLLTKVENIGIIKSQNIIRSINNSKNVSF 509

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +F+ SLGI  VG+ +ARS++ Y+ +   F                  + +  +G  IA 
Sbjct: 510 SKFLCSLGIFEVGSIVARSISNYFFTLDKFMNSSK----------EEFLLINGIGVNIAD 559

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            +  F  +  N   +  L K+++ S   +   + ++ +  KK+VF+G+     R K  E 
Sbjct: 560 NLYNFINDEFNKNIIFKLSKKLNISSDINAIIDNNNTLFRKKIVFSGSFSNFSRSKIIEL 619

Query: 670 VTQLGAVVSAILSRKT------------DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
                       S+K             D II+G  PG KL KA++  +  + E++FL +
Sbjct: 620 ------------SKKLGIIVVSSVSKSVDYIIIGKKPGRKLIKAKKFSIPGIYEKEFLNI 667

Query: 718 LQ 719
           + 
Sbjct: 668 IN 669


>gi|302387645|ref|YP_003823467.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1]
 gi|302198273|gb|ADL05844.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1]
          Length = 654

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 178/702 (25%), Positives = 297/702 (42%), Gaps = 63/702 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            +  L   ++     YYQ S+ I+ + EYD L      +               P   +G
Sbjct: 7   RMKELVNLLTAAGKAYYQESREIMSNFEYDRLYDELKELEDE----TGVILSKSPTQNVG 62

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            ++   L K  H  P LSL+K  ++E L++++             S    L  K+DG  +
Sbjct: 63  YQVLSELPKEAHETPMLSLDKTKSVESLQEWL------------GSQTGVLSWKLDGLTV 110

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + Y +G    A  RG+G  GE ++   +    IP  L+++    + +RGE  I  +DF 
Sbjct: 111 VLSYNRGTLQKAVTRGNGEIGEVITNNAKVFSNIP--LNISHMGELILRGEAVIKYSDFN 168

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRR-LNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
            +N+E+  V    Y NPRN  SG +R+  N     R +NF    L            +  
Sbjct: 169 RINEEIEEV-AAKYKNPRNLCSGSVRQLNNQITAQRNVNFKAFSLVTAEGAEFNNSRKEQ 227

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            +                    +           S+     DGLV   D+ +  + LG  
Sbjct: 228 FEWLKRQGFDVVDYEMVTRDT-LPEAVETFSKNISSYDIPSDGLVLLFDDIAYGEALGRT 286

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           ++ PR  I+ K+A++   TRL  I+    RTG++ PVA  +PV + G  ++ A++HN   
Sbjct: 287 SKFPRNAIAFKWADEIRETRLDHIEWSASRTGLINPVAIFDPVELEGTTVSRASVHNLSI 346

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           ++ L+           +  GD + V +A  +IP++   +       ++    P  CP+C 
Sbjct: 347 MEALE-----------LGEGDEITVYKANMIIPQIAGNLTR-----SKKIRIPDQCPVCG 390

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
                                    C A++L+    FVSRDA NI+GL +  L+ F    
Sbjct: 391 GST-----EIRRVNDVKSLYCTNPDCQAKRLKGFSLFVSRDALNIDGLSEATLEKFI--- 442

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  IR  ADIF L++ ++     I  + GFG  S  NL  ++ K  + +L R I+ LG
Sbjct: 443 -GAGYIREFADIFHLEQHEE----AITQMEGFGRKSYDNLIQAVKKASHTTLPRLIYGLG 497

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +G   A+ L + + S         +       +   L  VP +G ++A A + +++ 
Sbjct: 498 IAGIGLANAKMLCQEFKS---------DFGKMRKAEEEELTAVPGIGKVLADAWITYFKE 548

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVV 677
            +N   V+ LL EV+   G  E       E    V TG++     R   QE +   G   
Sbjct: 549 EKNNRMVDRLLSEVTIQ-GDGEVRSGGIFEGMVFVMTGSVNHYENRKALQEDIEAHGGKA 607

Query: 678 SAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFL 717
           +  ++ +T  +I  D  +  SK +KA++LGV I++EE F+ L
Sbjct: 608 AGSVTSRTTYLINNDTTSNSSKNKKAKELGVPIISEEDFIKL 649


>gi|71275191|ref|ZP_00651478.1| NAD-dependent DNA ligase [Xylella fastidiosa Dixon]
 gi|170731182|ref|YP_001776615.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa M12]
 gi|71164000|gb|EAO13715.1| NAD-dependent DNA ligase [Xylella fastidiosa Dixon]
 gi|167965975|gb|ACA12985.1| DNA ligase (NAD(+)) [Xylella fastidiosa M12]
          Length = 837

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 229/696 (32%), Positives = 353/696 (50%), Gaps = 91/696 (13%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +     +      +  + L + +   +  Y+   +P I D++YD + R  DA+   +PDL
Sbjct: 1   MTDPALMIPLDPAQRAAELRRRLQEANYHYHVLDQPRIPDADYDRMLRELDALEATYPDL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           A    P+ P  ++G  +  +  +V H++P LSL   ++  ++ +F+ RI     +     
Sbjct: 61  A---TPDSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITARLGETAP-- 115

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEI 184
             F+ EPK+DG  I++RY+ G F+  A RGDG +GEDV+A +R +PTIP+   S   P +
Sbjct: 116 -SFSAEPKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTV 174

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGL 243
           +EVRGEVY+ + DF A N +    G K  ANPRN A+G LR+L+      R L+F+ +G+
Sbjct: 175 LEVRGEVYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGI 234

Query: 244 GKT-SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           G+   ++      E+L  +R  GFPV+  V       G+++YY  M++IR TLP+DIDG+
Sbjct: 235 GEVADDVSFHSHSEILASLRAWGFPVSPLVELVYGSEGLLNYYRRMETIRDTLPFDIDGI 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYK+D+ S Q ++G  AR+PRW I+HKF  ++ +T +  I+IQIGRTG  TPVARL PV 
Sbjct: 295 VYKLDDLSGQHEMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQ 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +T+ATLHN D I  L           D+R+GD V+V+RAG+VIP+VV +I + R 
Sbjct: 355 VAGVTVTSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVAVITDSRP 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P    +S P  CP+C S +VR+         A  RC+G LAC AQ+ E ++HFVSR A +
Sbjct: 404 PGVTAWSMPMACPVCGSEIVRETG------AAVWRCSGELACPAQRKEAIRHFVSRRAMD 457

Query: 483 IEGLGKQQLDFFFK--------------------------SEDPAFSIRIPADIFTLQRR 516
           +EGLG + ++                              ++ P   +R   D  T  R 
Sbjct: 458 VEGLGVKCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRY 517

Query: 517 QQ------------------TSTTKIENILGFGD-----------VSVTNLYDSINKRRN 547
           QQ                      +I+ +                    NL  +I++ R 
Sbjct: 518 QQLEEILRTVGVDLSGEGDVPEHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAIDRSRQ 577

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +LERF+F+LG+ HVG   A++LA  +       Q    +             VP +G  
Sbjct: 578 TTLERFLFALGMTHVGETTAKALAHSFGDLAIIRQLPWPLFKC----------VPDIGGE 627

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
           +A+AI  F   P N  A++ L++        H    
Sbjct: 628 VARAIGHFMDQPANQQAIDDLVERGVRITDAHPPTS 663



 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 4/147 (2%)

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSI 636
            A     +      D  +L++   V    AQ++ E++Q+P NI     L      +   +
Sbjct: 691 LATLAPTLPLLAEADLDALLQ-AGVPQPAAQSLTEWFQSPDNISLARRLQHCCDVLLAQL 749

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              ++  ++ +  + +V TG L  + R  A   +  LGA +   +S+KT  ++ G++PGS
Sbjct: 750 PSPDRAHTAPLNGQSVVLTGKLASLTREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGS 809

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           KL+KA  L V I +E + L  L+QY+ 
Sbjct: 810 KLDKAHALHVDIWDEARLLDFLEQYSA 836


>gi|241662937|ref|YP_002981297.1| DNA ligase [Ralstonia pickettii 12D]
 gi|240864964|gb|ACS62625.1| DNA ligase, NAD-dependent [Ralstonia pickettii 12D]
          Length = 813

 Score =  386 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 225/662 (33%), Positives = 340/662 (51%), Gaps = 69/662 (10%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
               + L  E++ +   YY   +P + D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 14  EARAAWLRAELNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPELK---TPDSPTLR 70

Query: 78  IGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKD-DNSIFFTLEPKI 134
           +GG +      V H IP LS+  E        R F   + R     D D  + +  E K 
Sbjct: 71  VGGAVLPEFAAVRHVIPMLSIRTETDTTPNGARAFDASVRRELGLDDTDPPVEYAAELKF 130

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEV 191
           DG  I++RYE+G  V AA RGDG +GEDV+  IR I  IP     +  ++P+++EVRGEV
Sbjct: 131 DGLAISLRYERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGLSPVDGHVPDVLEVRGEV 190

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKT--SE 248
           Y+ ++DF  LN      G K + NPRN A+G +R+L+P        +FF +GLG+    +
Sbjct: 191 YMRRDDFEKLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEVAGWK 250

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                   ML  ++  GFPV+N         G+V ++  +++ R +LP+DIDG+VYKV+ 
Sbjct: 251 GMPGTHSSMLDVLQAFGFPVSNERAAVAGGEGLVRFHEAIRAKRDSLPFDIDGVVYKVNS 310

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG R+R PRW ++HK+  ++A T +  ID+Q+GRTG +TPVARL PV +GG  +
Sbjct: 311 LALQRELGFRSREPRWAVAHKYPAQEALTTVESIDVQVGRTGAITPVARLVPVFVGGVTV 370

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD---- 424
           TNATLHNED ++            +D+RVGD V+V+RAG+VIP+VV ++++ R  D    
Sbjct: 371 TNATLHNEDEVRR-----------KDVRVGDTVIVRRAGDVIPEVVSVVLDRRPMDDVPG 419

Query: 425 -----------AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
                        PF  P  CP+C S VVR+         A  RC+GGL CSAQ+ E ++
Sbjct: 420 SDLFNPQQQPKYPPFELPKTCPVCGSHVVREEGE------AVARCSGGLFCSAQRKEAIR 473

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL----- 528
           HF  R   +IEGLG++ +D   +       +   AD++ L         +  +       
Sbjct: 474 HFAGRRMMDIEGLGERYIDNLVE----LDYVHGIADLYKLTLEDFLEMKRRADERDGVTP 529

Query: 529 ------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582
                         NL + I   +   L RF+F+LGIRHVG   A++LA +  S     +
Sbjct: 530 ETVSAGKIATKWAENLLEGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAMIRR 589

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
               ++               VG  +A+AI +F+  P+N  A++ALL+      G H  N
Sbjct: 590 APAPLLLALP----------DVGATVAEAIADFFAEPKNQQALDALLEAGVAPQGEHAPN 639

Query: 643 VS 644
             
Sbjct: 640 AK 641



 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 15/166 (9%)

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG+  + A  A+ LA    +    A    + +A    D             +  +++E+ 
Sbjct: 655 LGVPKLTATRAKQLAVAAPTLAQLASVEPDQLAGLPAD-------------VTASLLEWL 701

Query: 617 QNPRNICAVEAL--LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            +  +   +  L  L+    +    E      +  K +V TGTL  + R +A+  +   G
Sbjct: 702 ASHDHRAQLAKLDALRGELLAAMPAEAAEEGVLAGKTVVLTGTLPNLTRDEAKAMLEAAG 761

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A VS  +S+KTD ++ G++ GSKL KA++L VK+++E   L LL++
Sbjct: 762 AKVSGSVSKKTDYVVAGEDAGSKLAKAEELNVKVLDEAGMLALLKK 807


>gi|295110374|emb|CBL24327.1| DNA ligase, NAD-dependent [Ruminococcus obeum A2-162]
          Length = 624

 Score =  386 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 172/684 (25%), Positives = 300/684 (43%), Gaps = 64/684 (9%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + + EYDAL    +        +      + P  ++G E   +L K TH  P LSL+K  
Sbjct: 1   MSNREYDALYNELEQTEK----ITGIVLADSPTVRVGYEAVDALPKETHDSPMLSLDKTK 56

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
             E LR F+                     K+DG  I + YE G+   A  RG+G  GE 
Sbjct: 57  EKEVLRGFVGSHKTLL------------SWKMDGLTIVLTYENGELQKAVTRGNGIVGEV 104

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
           ++   R    IP  L +     + +RGE  I+ +DF  +N+ +  V    Y NPRN  SG
Sbjct: 105 ITNNARVFRNIP--LKIAYQGRLVLRGEAIITYSDFERINNSIEDVD-AKYKNPRNLCSG 161

Query: 223 ILRR-LNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI 281
            +R+  N     R + F    L    ++      E   +            R   +   +
Sbjct: 162 SVRQLNNQITAERNVRFLAFALVSAQDVDMHNSREFQMEWLRTQGFEVVEYRVVTS-ENL 220

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341
               +      +T  +  DGLV   D+ +  + LG  A+ PR   + K+A++   T L +
Sbjct: 221 DEAMDYFAERITTNDFPSDGLVALYDDIAYGESLGSTAKFPRNAFAFKWADEVRETTLRE 280

Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401
           I+    RTG++ PVA  +PV + G  ++ A++HN   +K L            + +GD +
Sbjct: 281 IEWSPSRTGLINPVAVFDPVELEGTTVSRASVHNVSIVKEL-----------KLGIGDTI 329

Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461
            V +A  +IP++ + +       +     P+ CP+C             +          
Sbjct: 330 QVYKANMIIPQIAENLTQ-----SGKLEIPNTCPVCGQEARVIR-----ENDVEALYCMN 379

Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
             C A++++    FVSRDA NI+GL +  L+ F         I    DIF +++ +    
Sbjct: 380 PDCVAKKIKAFTLFVSRDAMNIDGLSEATLEKFIAK----GFIHNFGDIFEIEKYRD--- 432

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
            +I  + GFG+ S  NL  SI K +  +L + I+SLGI ++G   A+ + +Y+       
Sbjct: 433 -EIVMMDGFGEKSFDNLISSIEKAKKTTLAKVIYSLGISNIGLSNAKVICRYFD------ 485

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
              +++    +     +  +  +G +IA ++ +++    N   V+ LL  +   I + EK
Sbjct: 486 ---DDLDKIRSAKEEEISAIDGIGPVIAGSLTKYFAKSENNQKVDHLLGYL--HIVKEEK 540

Query: 642 NVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKL 698
           + +        V TG+L+    R +A+  +  LG  V+  ++ KT+ +I  D  +  SK 
Sbjct: 541 SDNQIFAGMNFVITGSLEHFSNRGEAKNLIESLGGKVTGSVTGKTNYLINNDVTSNSSKN 600

Query: 699 EKAQQLGVKIMNEEQFLFLLQQYN 722
           +KA++LG+ I++EE FL L ++  
Sbjct: 601 KKARELGIPILSEEDFLKLTEESK 624


>gi|9107768|gb|AAF85353.1|AE004063_2 DNA ligase [Xylella fastidiosa 9a5c]
          Length = 837

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 229/696 (32%), Positives = 353/696 (50%), Gaps = 91/696 (13%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           +     +      +  + L   +   +  Y+   +P I D++YD + R  DA+  A+PDL
Sbjct: 1   MTDPALMIPLDPAQRAAELRCRLQEANYHYHVLDQPRIPDADYDRMLRELDALEAAYPDL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           A    P+ P  ++G  +  +  +V H++P LSL   ++  ++ +F+ RI     +     
Sbjct: 61  A---TPDSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITACLGETAPG- 116

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEI 184
             F+ EPK+DG  I++RY+ G F+  A RGDG +GEDV+A +R +PTIP+   S   P +
Sbjct: 117 --FSAEPKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTV 174

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGL 243
           +EVRGEVY+ + DF A N +    G K  ANPRN A+G LR+L+      R L+F+ +G+
Sbjct: 175 LEVRGEVYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGI 234

Query: 244 GKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           G+ ++        E+L  +R  GFPV+  V        +++YY  M++IR TLP+DIDG+
Sbjct: 235 GEVTDDVSFHRHSEILASLRAWGFPVSPLVELVYGSEELLNYYRRMETIRDTLPFDIDGI 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           VYK+D+ S Q+++G  AR+PRW I+HKF  ++ +T +  I+IQIGRTG  TPVARL PV 
Sbjct: 295 VYKLDDLSGQREMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQ 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +T+ATLHN D I  L           D+R+GD V+V+RAG+VIP+VV +I + R 
Sbjct: 355 VAGVTVTSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVTVITDSRP 403

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             A  +S P  CP+C S +VR+         A  RC+G LAC AQ+ E ++HFVSR A +
Sbjct: 404 LGATAWSMPMACPVCGSEIVRETG------AAVWRCSGELACPAQRKEAIRHFVSRRAMD 457

Query: 483 IEGLGKQQLDFFFK--------------------------SEDPAFSIRIPADIFTLQRR 516
           +EGLG + ++                              ++ P   +R   D  T  R 
Sbjct: 458 VEGLGVKCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRY 517

Query: 517 QQ------------------TSTTKIENILGFGD-----------VSVTNLYDSINKRRN 547
           QQ                      +I+ +                    NL  +I++ R 
Sbjct: 518 QQLEEILRTVGVDLSGEGDVPKHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAIDRSRQ 577

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
            +LERF+F+LG+ HVG   A++LA  +       Q    +             VP +G  
Sbjct: 578 TTLERFLFALGMTHVGETTAKALAHSFGDLAIIRQLPWPLFKC----------VPDIGGE 627

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
           +A+AI  F   P N  A++ L++        H    
Sbjct: 628 VARAIGHFMDQPANQQAIDDLVERGVRITDTHPPTS 663



 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 4/147 (2%)

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSI 636
            A     +         +L++   V    AQ++ E++Q+P NI     L      +   +
Sbjct: 691 LAALAPTLPLLAEAALDTLLQ-AGVSQPAAQSLTEWFQSPDNISLARRLQHCCDVLLAQL 749

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              ++  ++ +  + +V TG L  + R  A   +  LGA +   +S+KT  ++ G++PGS
Sbjct: 750 PSADRAHTAPLNGQSVVLTGKLASLTREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGS 809

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           KL+KA  L V I +E + L  L QY+ 
Sbjct: 810 KLDKAHALHVDIWDEARLLAFLGQYSA 836


>gi|220929395|ref|YP_002506304.1| DNA ligase, NAD-dependent [Clostridium cellulolyticum H10]
 gi|254781296|sp|B8I3I1|DNLJ_CLOCE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219999723|gb|ACL76324.1| DNA ligase, NAD-dependent [Clostridium cellulolyticum H10]
          Length = 657

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 175/711 (24%), Positives = 318/711 (44%), Gaps = 65/711 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + +    + +      YYQ +  I+ + EYD L      +             N 
Sbjct: 1   MADKIQLMKDKIEILDRAAKAYYQENTEIMSNIEYDKLYDELLELEKE----TGVVLSNS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E+  +L K  H  P LSL+K  ++  L++++             +    L  K
Sbjct: 57  PSIHVGYELLSNLPKERHEKPMLSLDKTKDVGTLKEWL------------GTQKGILSWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + Y+ G  V A  RG G  GE ++   R    +P  +++     + +RGE  I
Sbjct: 105 LDGLTIVLTYQDGHLVKAVTRGTGEEGEVITNNARVFRNLP--VTIAYKGTLILRGEAII 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252
             +DF+ +N+E+  VG   Y NPRN  SG +R+LN      R + FF   L K   +   
Sbjct: 163 RYSDFIKINNEIADVG-VKYKNPRNLCSGSVRQLNNKVTSERNVYFFGFSLVKADNVELD 221

Query: 253 GQY-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                 +  ++  GF + +     ++       +           +  DGLV   ++ + 
Sbjct: 222 NSRASQMNWLKNQGFDIVDFKEVTSSNIEETVQWF--SQNIEANDFPSDGLVLTFEDIAY 279

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            + LG  A+ PR  I+ K+ ++   T LL+I+    RTG++ P+A  EPV + G  ++ A
Sbjct: 280 GESLGSTAKFPRDSIAFKWRDEIKETTLLNIEWSPSRTGLINPIAIFEPVELEGTTVSRA 339

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           ++HN   ++GL+           + +GD + V +A  +IP++ + +             P
Sbjct: 340 SIHNISIMEGLE-----------LGIGDTIGVYKANMIIPQISENLTRSGMA-----PIP 383

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C+ +          +            C A+Q++   HFV RDA N+EGL +  L
Sbjct: 384 EECPVCKGKT-----EIKQENGVKTLYCVNNECLAKQIKSFTHFVGRDAMNMEGLSEATL 438

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +           I+  AD+F +++ +     +I  + G G+ S   L  SINK R  +  
Sbjct: 439 EKLIAK----GLIKELADLFHIEKYKN----EILELEGLGEKSFNKLITSINKARKTTAV 490

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++SLGI +VG   A+ + +Y+           +     N ++  LI++  +GDI+A++
Sbjct: 491 RLLYSLGIPNVGLSNAKLICRYFK---------YDWNKIENAEFSELIQIGGIGDIMAES 541

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670
            + F+ + +    V+ +L E+               EN   V TG++++ + R + ++ +
Sbjct: 542 FIRFFSDEKKKVIVQDVLNELELE-EVQLSQSEQIFENLNFVITGSVEQFKNRDELKDVI 600

Query: 671 TQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G  V+  ++ KT+ +I  DN    SK +KA++L + I+ E QFL  L 
Sbjct: 601 EEKGGKVTGAVTSKTNYLINNDNMSNSSKNKKAKELNISIITEAQFLEWLN 651


>gi|71898271|ref|ZP_00680445.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1]
 gi|71732010|gb|EAO34067.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1]
          Length = 831

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 229/690 (33%), Positives = 351/690 (50%), Gaps = 91/690 (13%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +      +  + L + +   +  Y+   +P I D++YD + R  DA+   +PDLA    P
Sbjct: 1   MIPLDPAQRAAELRRRLQEANYHYHVLDQPRIPDADYDRMLRELDALEATYPDLA---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G  +  +  +V H++P LSL   ++  ++ +F+ RI     +       F+ E
Sbjct: 58  DSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITAHLGETAPG---FSAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  I++RY+ G F+  A RGDG +GEDV+A +R +PTIP+   S   P ++EVRGE
Sbjct: 115 PKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTVLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249
           VY+ + DF A N +    G K  ANPRN A+G LR+L+      R L+F+ +G+G+ ++ 
Sbjct: 175 VYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGIGEVTDD 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E+L  +R  GFPV+  V       G+++YY  M++IR TLP+DIDG+VYK+D+
Sbjct: 235 VSFHRHSEILASLRAWGFPVSPLVELVYGSEGLLNYYRRMETIRDTLPFDIDGIVYKLDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            S Q ++G  AR+PRW I+HKF  ++ +T +  I+IQIGRTG  TPVARL PV + G  +
Sbjct: 295 LSGQHEMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQVAGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           T+ATLHN D I  L           D+R+GD V+V+RAG+VIP+VV +I + R P    +
Sbjct: 355 TSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVAVITDSRPPGVTAW 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           S P  CP+C S +VR+         A  RC+G LAC AQ+ E ++HFVSR A ++EGLG 
Sbjct: 404 SMPMACPVCGSEIVRETG------AAVWRCSGELACPAQRKEAIRHFVSRRAMDVEGLGV 457

Query: 489 QQLDFFFK--------------------------SEDPAFSIRIPADIFTLQRRQQ---- 518
           + ++                              ++ P   +R   D  T  R QQ    
Sbjct: 458 KCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRYQQLEEI 517

Query: 519 --------------TSTTKIENILGFGD-----------VSVTNLYDSINKRRNISLERF 553
                             +I+ +                    NL  +I+  R  +LERF
Sbjct: 518 LLTVGVDLSGEGDVPEHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAIDHSRQTTLERF 577

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LG+ HVG   A++LA  +       Q    +             VP +G  +A+AI 
Sbjct: 578 LFALGMTHVGETTAKALAHSFGDLAIIRQLPWPLFKC----------VPDIGGEVARAIG 627

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
            F   P N  A++ L++        H    
Sbjct: 628 HFMDQPANQQAIDDLVERGVRITDAHPPTS 657



 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 4/147 (2%)

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSI 636
            A     +      D  +L++   V    AQ++ E++Q+P NI     L      +   +
Sbjct: 685 LATLAPTLPLLAETDLDALLQ-AGVPQPAAQSLTEWFQSPDNISLARRLQHCCDVLLAQL 743

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              ++  ++ +  + +V TG L  + R  A   +  LGA +   +S+KT  ++ G++PGS
Sbjct: 744 PSPDRAHTAPLNGQSVVLTGKLASLTREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGS 803

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           KL+KA  L V I +E + L  L+QY+ 
Sbjct: 804 KLDKAHALHVDIWDEARLLAFLEQYSA 830


>gi|71899829|ref|ZP_00681979.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1]
 gi|254782317|sp|B0U5G7|DNLJ_XYLFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71730420|gb|EAO32501.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1]
          Length = 831

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 229/690 (33%), Positives = 352/690 (51%), Gaps = 91/690 (13%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +      +  + L + +   +  Y+   +P I D++YD + R  DA+   +PDLA    P
Sbjct: 1   MIPLDPAQRAAELRRRLQEANYHYHVLDQPRIPDADYDRMLRELDALEATYPDLA---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G  +  +  +V H++P LSL   ++  ++ +F+ RI     +       F+ E
Sbjct: 58  DSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITARLGETAP---SFSAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  I++RY+ G F+  A RGDG +GEDV+A +R +PTIP+   S   P ++EVRGE
Sbjct: 115 PKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTVLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT-SE 248
           VY+ + DF A N +    G K  ANPRN A+G LR+L+      R L+F+ +G+G+   +
Sbjct: 175 VYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGIGEVADD 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+L  +R  GFPV+  V       G+++YY  M++IR TLP+DIDG+VYK+D+
Sbjct: 235 VSFHSHSEILASLRAWGFPVSPLVELVYGSEGLLNYYRRMETIRDTLPFDIDGIVYKLDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            S Q ++G  AR+PRW I+HKF  ++ +T +  I+IQIGRTG  TPVARL PV + G  +
Sbjct: 295 LSGQHEMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQVAGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           T+ATLHN D I  L           D+R+GD V+V+RAG+VIP+VV +I + R P    +
Sbjct: 355 TSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVAVITDSRPPGVTAW 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           S P  CP+C S +VR+         A  RC+G LAC AQ+ E ++HFVSR A ++EGLG 
Sbjct: 404 SMPMACPVCGSEIVRETG------AAVWRCSGELACPAQRKEAIRHFVSRRAMDVEGLGV 457

Query: 489 QQLDFFFK--------------------------SEDPAFSIRIPADIFTLQRRQQ---- 518
           + ++                              ++ P   +R   D  T  R QQ    
Sbjct: 458 KCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRYQQLEEI 517

Query: 519 --------------TSTTKIENILGFGD-----------VSVTNLYDSINKRRNISLERF 553
                             +I+ +                    NL  +I++ R  +LERF
Sbjct: 518 LRTVGVDLSGEGDVPEHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAIDRSRQTTLERF 577

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LG+ HVG   A++LA  +       Q    +             VP +G  +A+AI 
Sbjct: 578 LFALGMTHVGETTAKALAHSFGDLAIIRQLPWPLFKC----------VPDIGGEVARAIG 627

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
            F   P N  A++ L++        H    
Sbjct: 628 HFMDQPANQQAIDDLVERGVRITDAHPPTS 657



 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 4/147 (2%)

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSI 636
            A     +      D  +L++   V    AQ++ E++Q+P NI     L      +   +
Sbjct: 685 LATLAPTLPLLAEADLDALLQ-AGVPQPAAQSLTEWFQSPDNISLARRLQHCCDVLLAQL 743

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              ++  ++ +  + +V TG L  + R  A   +  LGA +   +S+KT  ++ G++PGS
Sbjct: 744 PSPDRAHTAPLNGQSVVLTGKLASLTREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGS 803

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           KL+KA  L V I +E + L  L+QY+ 
Sbjct: 804 KLDKAHALHVDIWDEARLLDFLEQYSA 830


>gi|297196946|ref|ZP_06914343.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083]
 gi|297146537|gb|EDY59948.2| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083]
          Length = 712

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 201/755 (26%), Positives = 320/755 (42%), Gaps = 90/755 (11%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M        E +      + +             YY+     + D  YD L R   A   
Sbjct: 16  MTGMTTPAAEIMDGAAYAQAVEDAV----KASAAYYEGGTSALDDDAYDRLVRGIAAWET 71

Query: 61  AFPDLARSEDPNGPLNKI-GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
             PD      PN P  K+ GG +      V H++  LSL+ +++ ED   +   + R   
Sbjct: 72  DHPDQVL---PNSPTGKVAGGAVVGD---VPHTVAMLSLDNVFSPEDFTAWTVSLARRIG 125

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
                   F++EPK+DG  I  RY +G+      RGDG +GEDVS  I  +  +P  L  
Sbjct: 126 ---HEVRRFSVEPKLDGLAIAARYTQGRLARLITRGDGIAGEDVSHAIGTLEGLPEKLDQ 182

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFF 239
            +   +EVRGEV ++   F   N+   A G +P+AN R A++G LR  +         F 
Sbjct: 183 PV--TVEVRGEVLMTTAQFEHANEVRTAHGGQPFANARGASAGTLRAKDRAYTVPMTFFG 240

Query: 240 VHGLGKTSEIFAKG-------QYEMLQKMRCLGFPVNNGV----RQANTFHGIVSYYNEM 288
              L       A           +++     +G             A T   ++    E+
Sbjct: 241 YSLLSLPDADSALTERLNGLAHSDLMDLTAQMGVNTTATTAAPGIIATTVEEVLDRVREI 300

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
            ++R+ LP+ IDG+V K D  + Q+  G  +R+PRW I++K    +  TRLLD++  +GR
Sbjct: 301 AALRAELPFGIDGIVIKADLAADQQAAGSGSRAPRWAIAYKLPAVEKITRLLDVEWNVGR 360

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TGI+ P   LEPV I GA IT ATLHN   I             R +R+GD V+V RAG+
Sbjct: 361 TGIVAPRGVLEPVEIDGATITYATLHNPADIAR-----------RGLRLGDHVMVHRAGD 409

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           VIP++   + + R  D QP +FP  CP C S +               RC  G  C    
Sbjct: 410 VIPRIEAPVAHLRTGDEQPIAFPEVCPRCGSAID--------TSQERWRCEQGRNC--HL 459

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
           +  L +   RD  +IEGLG  ++    +    A  +   AD+FTL R Q         + 
Sbjct: 460 VASLSYAAGRDQLDIEGLGVTRIVQLVE----AGLVTDLADLFTLTRDQL------LALE 509

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
             G  S  NL  +I   +   L R + +LG+R  G  ++R +A+++ +            
Sbjct: 510 RMGATSTDNLLTAIAAAKGQPLSRVLCALGVRGTGRSMSRRIARHFATMDTIRAA----- 564

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---------- 638
                D  ++ +V  +G   A +IV           ++ L+                   
Sbjct: 565 -----DADAMQQVEGIGTEKAPSIVAELAELA--PLIDKLIAAGVNMTEPGVTPPPAAGD 617

Query: 639 ------HEKNVSSEIENKKLVFTGT----LQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
                   K     +    +V TG     L+K+ R++  E + + G   S+ +S+KT ++
Sbjct: 618 TDAAAGGTKAAGGPLAGMTVVVTGAMTGALEKLSRNQMNELIERAGGRSSSNVSKKTTLV 677

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           + G+  GSK  KA+ LG+++   ++F  L+  + +
Sbjct: 678 VAGEGAGSKRAKAEDLGIRLATPDEFAALVADFTS 712


>gi|167041226|gb|ABZ05983.1| putative NAD-dependent DNA ligase adenylation domain protein
           [uncultured marine microorganism HF4000_001N02]
          Length = 727

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 175/732 (23%), Positives = 301/732 (41%), Gaps = 85/732 (11%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
             +  L Q +++H D YY  + P+I D+EYD L      +    P L          +++
Sbjct: 13  ARIEELAQLLAHHSDLYYNEAAPVITDAEYDLLFDELKRLDPTHPQL----------DRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      KV H  P  SL+K   + ++  F+        +   +   F  +PK+DG+ 
Sbjct: 63  GSDPAPGSVKVEHLFPMQSLDKASEVAEISHFVA-------QTTAHGRRFVCQPKLDGSA 115

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +++ Y +G+ V AA RG+G  GEDV+A  R IP IP   SL       +RGEV +    F
Sbjct: 116 LSLEYRRGRLVRAATRGNGERGEDVTANARRIPNIP--ESLGWDGDCHIRGEVVMPLETF 173

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD---ITRYLNFFVHGLGKTSEIF----- 250
            +              NPRN A+G LR+ +          L+F  +G+            
Sbjct: 174 RSKYAS-------FAPNPRNLAAGSLRQKHVKAGKGDAADLSFHAYGVMFPGLDHKHPDS 226

Query: 251 -----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV--------------SYYNEMKSI 291
                     + +  +   G                +                       
Sbjct: 227 PAPPDFNHDSQAIDWLTQNGIAAAGNEVVEAGVDEGIEEAEADEAVAEALLQVTENWARK 286

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R T  +++DG+V K+DEF  ++ LG+ A  PRW ++ KF  ++A+T LL +D Q GRTG 
Sbjct: 287 RDTADWELDGVVIKLDEFRKRELLGKTAHHPRWALAWKFPPEEATTVLLGVDWQTGRTGT 346

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVAR+ PV + G  + N TLHN   I+ L            I VGDRV + R G+VIP
Sbjct: 347 VTPVARVAPVRVSGVTVENTTLHNAGEIERL-----------GISVGDRVRITRRGDVIP 395

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           K+V+++      D          P     +      K        R       +  +   
Sbjct: 396 KIVEVLGEATSADLDNRFHADGTPFAD-PLPLRRGVKIPANCPRCRSGLQEDGAFIRCFN 454

Query: 472 LKHFVSRDAFNIEGLG-----KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN 526
           L+   SR   +I             +   +    A  ++   D++ L  +        E 
Sbjct: 455 LE-CPSRLERSILYWCRALEMDGIGEKLAEQLCEAGLVKTLPDLYRLSGKDL------EG 507

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
           +    + S  N+   ++  + + L  F+ +LG+  +G E+A   A+   S    +  +  
Sbjct: 508 LERMAEKSAANVIAQLDDSKTLDLAAFLAALGLPGIGPELAGGFAQEIGS----STAMFE 563

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
           ++A +      LIR+  VG+ +A + +           VE L+  ++ +     +   S 
Sbjct: 564 LLADSEAAVERLIRIEGVGETVAGSFLSGL--EMRREMVEDLVDVLTITDVEAVEKSGS- 620

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  +    TGTL +  R +    +   G  V + +S K D ++ G++ G KL+KA +L V
Sbjct: 621 LTGQTFCITGTLTR-PRKEVALMIKAAGGKVVSAVSGKLDHLVAGESAGLKLDKANRLSV 679

Query: 707 KIMNEEQFLFLL 718
            +++E + L ++
Sbjct: 680 NVLSEAEVLSMI 691


>gi|299067453|emb|CBJ38652.1| DNA ligase [Ralstonia solanacearum CMR15]
          Length = 813

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 226/679 (33%), Positives = 339/679 (49%), Gaps = 73/679 (10%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K +       S        ++L   ++ +   YY   +P + D+EYD L R  +A+  
Sbjct: 1   MSKTEHPA----SGASPETRAAALRATLNRYAHEYYVLDQPSVPDAEYDRLYRELEALEA 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFW 118
             P+L     P+ P  ++GG +      V H +P LS+    +        F   + R  
Sbjct: 57  DHPEL---RTPDSPTLRVGGAVLPEFAPVRHVVPMLSIRTETDTTAGGALDFDASVRREL 113

Query: 119 QKKD-DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP--- 174
              + D  + +  E K DG  I +RYE+G  V AA RGDG +GEDV+  IR I  IP   
Sbjct: 114 GLAESDPPVEYAAELKFDGLAINLRYERGFLVQAATRGDGATGEDVTQNIRTIRQIPLGL 173

Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR 234
           R +   +P+++EVRGEVY+ ++DF  LN      G K + NPRN A+G +R+L+P     
Sbjct: 174 RPVDGAVPDVLEVRGEVYMRRDDFERLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAE 233

Query: 235 YL-NFFVHGLGK--TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
              +FF +GLG+        +    ML  +   GFPV+          G+V ++  + + 
Sbjct: 234 RPLSFFAYGLGEAAGWSGMPETHSGMLDALVAYGFPVSKERAAVTGGEGLVQFHAAIGAK 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LP+DIDG+VYKV+  +LQ++LG R R PRW ++HK+  ++A T +  I +Q+GRTG 
Sbjct: 294 RDSLPFDIDGVVYKVNSLALQRELGFRTREPRWAVAHKYPAQEALTTVESIGVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARL PV +GG  +TNATLHNED ++            +D+RVGD V+V+RAG+VIP
Sbjct: 354 ITPVARLVPVFVGGVTVTNATLHNEDEVRR-----------KDVRVGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNER---------------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456
           +VV +++  R                P   PF  P  CP+C S VVR+         A  
Sbjct: 403 EVVAVVLERRPMEDMPGSDLFNPAQQPKHPPFELPKSCPVCGSHVVREEGE------AVA 456

Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516
           RC+GGL CSAQ+ E ++HF  R   +IEGLG++ +D   + E     +   AD+F L   
Sbjct: 457 RCSGGLFCSAQRKEAIRHFAGRRMMDIEGLGERYIDNLVELE----YVHGIADLFRLTLD 512

Query: 517 QQTSTTKIENIL-----------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
                 +  +                     NL D I   +   L RF+F+LGIRHVG  
Sbjct: 513 DFLEMKRRADERDGVTPETVAAGKIATKWAENLLDGIRASKTPPLARFLFALGIRHVGES 572

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A++LA +  S     +    +          L+ +P VG  +A+AI +F+  P+N  A+
Sbjct: 573 TAKTLADWLGSLAVIRRAPAPL----------LLTLPDVGATVAEAIADFFAEPKNQQAL 622

Query: 626 EALLKEVSPSIGRHEKNVS 644
           +ALL       G H  +  
Sbjct: 623 DALLAAGVAPQGEHAPSAK 641



 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 17/167 (10%)

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LG+  + A  ++ LA    S    A      +     D             ++ +++ +
Sbjct: 654 ALGVPKLTAIRSKQLATLVPSLAQLAHVDTAQLEGLPAD-------------VSASLLSW 700

Query: 616 YQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            +   +      +EAL  E+  ++          +  K +V TGTL  + R +A+  +  
Sbjct: 701 LEADDHRAGLAQLEALRAELLAAMPAGAAE-EGALSGKTVVLTGTLPTLSRDEAKAMLEA 759

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GA VS  +S+KTD ++ G+  GSKL +AQ+LGV++++E   L LLQ
Sbjct: 760 AGAKVSGSVSKKTDYVVAGEEAGSKLARAQELGVRVLDEAGMLALLQ 806


>gi|170739961|ref|YP_001768616.1| DNA ligase, NAD-dependent [Methylobacterium sp. 4-46]
 gi|254781369|sp|B0UQ51|DNLJ_METS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|168194235|gb|ACA16182.1| DNA ligase, NAD-dependent [Methylobacterium sp. 4-46]
          Length = 827

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 260/651 (39%), Positives = 370/651 (56%), Gaps = 50/651 (7%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M  +   P+E ++ E+AR    +L  EI+ HD  Y+    PII D+ YD+L+RR +AI  
Sbjct: 1   MAAQTTRPVEEITAEEARAAHEALSAEIAEHDRRYHGEDAPIISDAAYDSLRRRLEAIEE 60

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
            FPDLA +         +G + +    KV H++P LSL   +  E++ +F+ R+ RF   
Sbjct: 61  RFPDLAGTGAA---SASVGAKASDKFAKVRHAVPMLSLGNAFADEEIEEFVERVRRFLGL 117

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
               S+  T EPKIDG  +++RYE G+ V AA RGDG  GEDV+A +R I  +P  L+  
Sbjct: 118 PASESLAVTAEPKIDGLSLSLRYEGGRLVTAATRGDGEVGEDVTANVRTIREVPERLAGP 177

Query: 181 I-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
             PEI EVRGEVY+S  DF A+N      G+  +ANPRNAA+G LR+L+P+   +R L F
Sbjct: 178 DVPEICEVRGEVYLSHADFAAINARQEEAGKPLFANPRNAAAGSLRQLDPSITASRPLRF 237

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F +  G+ S   A+ Q  ++   R  G PVN    +  +   ++++Y  +++ R+ L YD
Sbjct: 238 FAYAAGEMSTWPAETQSGLIAAFRRFGLPVNPRTTRCTSVAEMLAHYRAIETERADLGYD 297

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD F+LQ++LG  AR+PRW ++HKF  ++A T +  I+I +GRTG L P+ARL
Sbjct: 298 IDGVVYKVDSFALQRRLGFVARAPRWALAHKFPAQRAVTTIEAIEINVGRTGSLNPLARL 357

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMR------------------GGRDIRVGDR 400
            PV +GG +++NATLHNEDY++G+DA G  +R                   G D+RVGD 
Sbjct: 358 RPVTVGGVVVSNATLHNEDYVRGIDADGTPIRSGINIWDGFALRTDVDLSRGSDVRVGDT 417

Query: 401 VLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG 460
           V+V RAG+VIPKV D+++  R  DA P+ FP  CP C S  VR  NP+TGKL +  RCTG
Sbjct: 418 VVVLRAGDVIPKVADVVLERRPADAVPYRFPEICPACGSHAVRSYNPRTGKLDSVRRCTG 477

Query: 461 GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR---- 516
           GL C AQ  ERLKHFVSR+A +IEG G+  +   F+    A  +R PAD+F L       
Sbjct: 478 GLICPAQGQERLKHFVSRNALDIEGFGETSITTLFE----AGLVRQPADLFRLDFAPLKA 533

Query: 517 ------------------QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                             +     K +      D ++ NL  ++  RR + L RFIF+LG
Sbjct: 534 AIVARRQALSAERALASGKAPEARKTKAKASEEDKAIRNLLAAVEARRVVPLNRFIFALG 593

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN-NDDWLSLIRVPLVGDII 608
           I  VG   A++LAK++       + +    AH    DW+ L  +  VG   
Sbjct: 594 IEQVGEATAKALAKHFPDMPALMEGVRAAAAHQPGPDWVGLAALNRVGPTT 644



 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 81/153 (52%), Gaps = 2/153 (1%)

Query: 568 RSLAKYYLSYQNFAQE-INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
            +L + Y S +      +        D +  L     +G +   ++++F+    N+ AVE
Sbjct: 674 EALLEAYGSPEGVRAAVMRACRQRPGDAYRHLADDSEIGAVTTASLIQFFSEAHNVAAVE 733

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           ALL +V           +     + +VFTG+L+++ R +A+    +LGA VS  +S KTD
Sbjct: 734 ALLAQVRTERAAPPAAAA-AFSGRTVVFTGSLERMTRSEAKATAERLGAKVSGSVSAKTD 792

Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +++ G   G+KL+ A++ GV++++E ++L +++
Sbjct: 793 LVVAGPGAGTKLKDAEKHGVRVISEAEWLAMVE 825


>gi|153813883|ref|ZP_01966551.1| hypothetical protein RUMTOR_00089 [Ruminococcus torques ATCC 27756]
 gi|331088166|ref|ZP_08337086.1| DNA ligase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145848279|gb|EDK25197.1| hypothetical protein RUMTOR_00089 [Ruminococcus torques ATCC 27756]
 gi|330408822|gb|EGG88285.1| DNA ligase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 653

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 181/715 (25%), Positives = 306/715 (42%), Gaps = 68/715 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  ++  K +  L + ++     Y Q +  I+ + EYD L     ++         +   
Sbjct: 1   MEKKKKTKRMRELVELLNKARRAYEQENTEIMSNFEYDRLYDELLSLEKE----LETTLA 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P   +G E+   L K  H  P LSL+K  ++E LR+F+                  + 
Sbjct: 57  SSPTVNVGYEVLSELPKERHETPMLSLDKTKDVERLREFL------------GDQQAVIS 104

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  I + YE G    A  RG+G  GE V+   +    +P  LS+     + +RGE 
Sbjct: 105 WKMDGLTIVLTYENGVLKKAVTRGNGEIGEVVTNNAKVFRNVP--LSIPFKGELVLRGEA 162

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            IS  DF  +N+E I      Y NPRN  SG +R+LN      R + F+   L K   + 
Sbjct: 163 VISYKDFEKINEE-IGDADAKYKNPRNLCSGSVRQLNNEVTAKRNVRFYAFTLVKADNVD 221

Query: 251 AKGQYEMLQKM-RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            +       K  +  GF V           G                   DGLV   D+ 
Sbjct: 222 FENSRAYQLKWLQEQGFDVVEHHLVTRDTVG--DEVAWFAEHIRENEVPSDGLVLIYDDI 279

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           S  + LG  A+ PR   + K+ ++   T + +I+    RTG++ PVA  +PV + G  ++
Sbjct: 280 SYGQSLGTTAKFPRDSFAFKWEDEVRKTTIREIEWSPSRTGLINPVAIFDPVELEGTTVS 339

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A++HN   ++ L+           + +GD V V +A  +IP++ + +            
Sbjct: 340 RASVHNISIMEELE-----------LGIGDTVTVYKANMIIPQIAENLTRSGVS-----E 383

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C+      +   T  L   +             +    F SRDA NIEGL + 
Sbjct: 384 IPKECPVCKKPTKISMENNTKTLYCMNPKCQAKHV-----KSFSLFASRDAMNIEGLSEA 438

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+ F  +      ++   DIF L R +     +I+ + GFG+ S  NL   I   R  +
Sbjct: 439 TLEKFIIN----GYVKDFTDIFHLDRYEA----EIKTMEGFGEKSYENLRKRIENARKTT 490

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R I+SLGI ++G   A+ + +             +           L  +  VG +IA
Sbjct: 491 LPRLIYSLGIPNIGISNAKMICRALG---------EDPKRVIRATEEELSAISGVGGVIA 541

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQE 668
              VE++++  ++   + LLKEV  +    E+    +      V TG+++    R + +E
Sbjct: 542 GTFVEYFKDTAHVDVFDRLLKEVELTKETSEE--DQKFAGVNFVITGSVEHFVNRAQVKE 599

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGS---KLEKAQQLGVKIMNEEQFLFLLQQ 720
            + + G  V+  ++ KT+ +I  D  GS   K +KA++LG+ I++EE FL ++ +
Sbjct: 600 EIEKRGGKVTGSVTSKTNYLINND-TGSGTAKNKKARELGIPIISEEDFLQMMNE 653


>gi|77747612|ref|NP_299833.2| NAD-dependent DNA ligase LigA [Xylella fastidiosa 9a5c]
 gi|166216281|sp|Q9PAG2|DNLJ_XYLFA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 831

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 229/690 (33%), Positives = 352/690 (51%), Gaps = 91/690 (13%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +      +  + L   +   +  Y+   +P I D++YD + R  DA+  A+PDLA    P
Sbjct: 1   MIPLDPAQRAAELRCRLQEANYHYHVLDQPRIPDADYDRMLRELDALEAAYPDLA---TP 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G  +  +  +V H++P LSL   ++  ++ +F+ RI     +       F+ E
Sbjct: 58  DSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITACLGETAPG---FSAE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV-LSLNIPEIIEVRGE 190
           PK+DG  I++RY+ G F+  A RGDG +GEDV+A +R +PTIP+   S   P ++EVRGE
Sbjct: 115 PKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTVLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI 249
           VY+ + DF A N +    G K  ANPRN A+G LR+L+      R L+F+ +G+G+ ++ 
Sbjct: 175 VYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGIGEVTDD 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E+L  +R  GFPV+  V        +++YY  M++IR TLP+DIDG+VYK+D+
Sbjct: 235 VSFHRHSEILASLRAWGFPVSPLVELVYGSEELLNYYRRMETIRDTLPFDIDGIVYKLDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            S Q+++G  AR+PRW I+HKF  ++ +T +  I+IQIGRTG  TPVARL PV + G  +
Sbjct: 295 LSGQREMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQVAGVTV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           T+ATLHN D I  L           D+R+GD V+V+RAG+VIP+VV +I + R   A  +
Sbjct: 355 TSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVTVITDSRPLGATAW 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           S P  CP+C S +VR+         A  RC+G LAC AQ+ E ++HFVSR A ++EGLG 
Sbjct: 404 SMPMACPVCGSEIVRETG------AAVWRCSGELACPAQRKEAIRHFVSRRAMDVEGLGV 457

Query: 489 QQLDFFFK--------------------------SEDPAFSIRIPADIFTLQRRQQ---- 518
           + ++                              ++ P   +R   D  T  R QQ    
Sbjct: 458 KCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRYQQLEEI 517

Query: 519 --------------TSTTKIENILGFGD-----------VSVTNLYDSINKRRNISLERF 553
                             +I+ +                    NL  +I++ R  +LERF
Sbjct: 518 LRTVGVDLSGEGDVPKHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAIDRSRQTTLERF 577

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+LG+ HVG   A++LA  +       Q    +             VP +G  +A+AI 
Sbjct: 578 LFALGMTHVGETTAKALAHSFGDLAIIRQLPWPLFKC----------VPDIGGEVARAIG 627

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
            F   P N  A++ L++        H    
Sbjct: 628 HFMDQPANQQAIDDLVERGVRITDTHPPTS 657



 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 4/147 (2%)

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSI 636
            A     +         +L++   V    AQ++ E++Q+P NI     L      +   +
Sbjct: 685 LAALAPTLPLLAEAALDTLLQ-AGVSQPAAQSLTEWFQSPDNISLARRLQHCCDVLLAQL 743

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              ++  ++ +  + +V TG L  + R  A   +  LGA +   +S+KT  ++ G++PGS
Sbjct: 744 PSADRAHTAPLNGQSVVLTGKLASLTREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGS 803

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           KL+KA  L V I +E + L  L QY+ 
Sbjct: 804 KLDKAHALHVDIWDEARLLAFLGQYSA 830


>gi|309782142|ref|ZP_07676872.1| DNA ligase, NAD-dependent [Ralstonia sp. 5_7_47FAA]
 gi|308919208|gb|EFP64875.1| DNA ligase, NAD-dependent [Ralstonia sp. 5_7_47FAA]
          Length = 813

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 224/662 (33%), Positives = 338/662 (51%), Gaps = 69/662 (10%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
               + L  E++ +   YY   +P + D+EYD L R  +A+    P+L     P+ P  +
Sbjct: 14  EARAAWLRAELNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPELK---TPDSPTLR 70

Query: 78  IGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKD-DNSIFFTLEPKI 134
           +GG +      V H IP LS+  E        R F   + R     D D  + +  E K 
Sbjct: 71  VGGAVLPEFAAVRHVIPMLSIRTETDTTPNGARAFDASVRRELGLDDTDPPVEYAAELKF 130

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEV 191
           DG  I +RYE+G  V AA RGDG +GEDV+  IR I  IP     +  ++P+++EVRGEV
Sbjct: 131 DGLAIGLRYERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGLSPVDGHVPDVLEVRGEV 190

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKT--SE 248
           Y+ ++DF  LN      G K + NPRN A+G +R+L+P        +FF +GLG+    +
Sbjct: 191 YMRRDDFEKLNVRQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEVVGWK 250

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                   ML  ++  GFPV+          G+V +++ + + R +LP+DIDG+VYKV+ 
Sbjct: 251 GMPGTHSGMLDALQAFGFPVSAERAAVKGGDGLVEFHDAIGAKRDSLPFDIDGVVYKVNS 310

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG R+R PRW ++HK+  ++A T +  ID+Q+GRTG +TPVARL PV +GG  +
Sbjct: 311 LALQRELGFRSREPRWAVAHKYPAQEALTTVESIDVQVGRTGAITPVARLVPVFVGGVTV 370

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER------- 421
           TNATLHNED ++            +D+RVGD V+V+RAG+VIP+VV ++++ R       
Sbjct: 371 TNATLHNEDEVRR-----------KDVRVGDTVVVRRAGDVIPEVVSVVLDRRPLDDVPG 419

Query: 422 --------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
                    P   PF  P  CP+C S VVR+         A  RC+GGL CSAQ+ E ++
Sbjct: 420 SDLFNPRQQPKYPPFELPKTCPVCGSHVVREEGE------AVARCSGGLFCSAQRKEAIR 473

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL----- 528
           HF  R   +IEGLG++ +D   +       +   AD++ L         +  +       
Sbjct: 474 HFAGRRMMDIEGLGERYIDNLVE----LDYVHGIADLYKLTLEDFLEMKRRADERDGVKP 529

Query: 529 ------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582
                         NL + I   +   L RF+F+LGIRHVG   A++LA +  S     +
Sbjct: 530 ETVSAGKIATKWAENLLEGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAMIRR 589

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
               ++               VG  +A+AI +F+  P+N  A++ALL+      G H  N
Sbjct: 590 APAPLLLALP----------DVGATVAEAIADFFAEPKNQQALDALLEAGVAPQGEHAPN 639

Query: 643 VS 644
             
Sbjct: 640 AK 641



 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 15/166 (9%)

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG+  + A  A+ LA    +    A    + +A    D             +  +++E+ 
Sbjct: 655 LGVPKLTATRAKQLAVAAPTLAQLASVEPDQLAGLPAD-------------VTASLLEWL 701

Query: 617 QNPRNICAVEAL--LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            +  +   +  L  L+    +    E      +  K +V TGTL  + R +A+  +   G
Sbjct: 702 ASHDHRAQLAKLDALRGELLAAMPAEAAEEGVLAGKTVVLTGTLPNLTRDEAKAMLEAAG 761

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A VS  +S+KTD ++ G++ GSKL KA++L VK+++E   L LL++
Sbjct: 762 AKVSGSVSKKTDYVVAGEDAGSKLAKAEELNVKVLDEAGMLALLKK 807


>gi|166215830|sp|Q4A899|DNLJ_MYCH7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|144575353|gb|AAZ53640.2| DNA ligase [Mycoplasma hyopneumoniae 7448]
          Length = 692

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 210/736 (28%), Positives = 346/736 (47%), Gaps = 74/736 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-G 73
            Q R ++  L ++I   +  YYQ   P++ D  YD   R  + +      L   E+ N  
Sbjct: 5   SQIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQS 64

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+G ++     KV HS P LSL K ++ E+L K+  +     +     ++ F +EPK
Sbjct: 65  PSQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEKWAKKAREILK-----TVTFFVEPK 119

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  +++ Y+ G  + A  RGDG  GE+V      I        +N  E +EVRGE+YI
Sbjct: 120 IDGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPKKINYLEDLEVRGEIYI 179

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD---------------ITRYLNF 238
             + F +L      +  K + NPRNAASGILRR                      RYL  
Sbjct: 180 DNSTFASLQ-----LETKKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFRYLKS 234

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F + L    +     Q++ +  +R LGF VN   ++ +    + ++ + +K  R  L Y+
Sbjct: 235 FFYTLVNPEKHKINSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDFLNYN 294

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KV+EFS+ ++LG  ++ P   I+ KF +  A T+LL I   IGRTG +T  A++
Sbjct: 295 IDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTYNAKI 354

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G+ I++A L N  YI+ L            + +   V +K+AGE+IP+++  + 
Sbjct: 355 EPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQIIGSVH 403

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           N    +   FS    CP C S +V   +          +      C    L+++ HF S+
Sbjct: 404 NYPKTN---FSIVKNCPKCNSELVNSESGLD-------QFCQNQFCPEIILQKIVHFCSK 453

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR----------QQTSTTKIENIL 528
           +A NIE L +++++ F +       I    DIF L+ +          +    TK     
Sbjct: 454 NALNIESLAQKRIEKFLEK----GLISSACDIFYLKDKLELIYERLSNKNQLLTKQNASQ 509

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
                S+  L + + + +NI   R IF LGIR+VG + A+ L++Y  +            
Sbjct: 510 SMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELR------- 562

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
              N D+  L      G +I +++++++ N +N   +  L             N S+   
Sbjct: 563 ---NLDFNLLKNQHDFGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQSNSWA 619

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
                 +G L K  R +    + + GA     +++KTD +++G + GSK+EKA++ G+KI
Sbjct: 620 --SFAISGKLSK-PRDEYVRIIEESGASFHESVTKKTDFLLLGQSAGSKIEKAKKAGIKI 676

Query: 709 MNEEQFLFLLQQYNTT 724
           +NE QF  L++    T
Sbjct: 677 INEVQFFDLIKNSKKT 692


>gi|290962622|ref|YP_003493804.1| DNA ligase [Streptomyces scabiei 87.22]
 gi|260652148|emb|CBG75280.1| putative DNA ligase [Streptomyces scabiei 87.22]
          Length = 704

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 203/724 (28%), Positives = 318/724 (43%), Gaps = 86/724 (11%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
                YY      + D  YD L R       A P+      P  P  K+ G        V
Sbjct: 33  RASAAYYTGGTSALDDDTYDRLVRGIAVWEAAHPEQVL---PESPTGKVAGGAVEG--DV 87

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H++  LSL+ +++ E+   +   + R       +   F +EPK+DG  +  RY +G+  
Sbjct: 88  PHTVAMLSLDNVFSAEEFTAWTASLARRIG---HDVERFGVEPKLDGLAVAARYTRGRLT 144

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
               RGDG +GEDVS  I  I  +PR L+  +   +EVRGEV ++   F   N+     G
Sbjct: 145 RLITRGDGTAGEDVSHAIGTIEGLPRELAEPV--TVEVRGEVLMTTAQFEHANEVRTEHG 202

Query: 210 RKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG--------QYEMLQKM 261
            +P+ANPRNAA+G LR            FF +GL       A            E++ + 
Sbjct: 203 GQPFANPRNAAAGTLRARERAYTVPMT-FFGYGLLALPGTDADSAARLGELAHSELMARA 261

Query: 262 RCLGFPVNNGVRQ----ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
             LG             A T   ++    E+  +R+ LP+ IDG+V K D  + Q+  G 
Sbjct: 262 AGLGVNTTASTAVPGVTAATVEEVLDRVKEIAGLRAELPFGIDGIVIKADLAADQRAAGS 321

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             R+PRW I++K    +  TRLL++   +GRTGI+ P   LEPV I G+ IT ATLHN  
Sbjct: 322 GTRAPRWAIAYKLPAVEKITRLLEVQWNVGRTGIIAPRGVLEPVEIDGSTITYATLHNPA 381

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I             RD+R+GD V+V RAG+VIP+V   + + R  D QP  FP  CP C
Sbjct: 382 DITR-----------RDLRLGDHVMVHRAGDVIPRVEAPVAHLRTGDEQPIVFPEVCPRC 430

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +               RC  G  C    +  L + V RD  ++EGLG  ++    + 
Sbjct: 431 GSGIDTGEQ--------RWRCENGRNC--HLVASLSYAVGRDQLDVEGLGHTRVVQLVE- 479

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   AD+F L R Q  S      +   G+ S  NL  +++  R   L R + +L
Sbjct: 480 ---AGLVADLADLFALTREQLLS------LDRMGETSTDNLLAALDTARGRPLSRVLCAL 530

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           G+R  G  ++R +A+++ +  +              D  ++ RV  +G   A +IV    
Sbjct: 531 GVRGTGRSMSRRIARHFATMDDIRAA----------DAEAIQRVEGIGTEKAPSIVAELA 580

Query: 618 NPRNICAVEALLKEVSPS----------------IGRHEKNVSSEIENKKLVFTG----T 657
                  ++ L+                           +     +    +V TG     
Sbjct: 581 ELA--PLIDKLVAAGVNMTEPGATPPAPAGDPEGPEEGAEGAGGPLAGMAVVVTGAMTGV 638

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L+K+ R++  E + + G   S+ +S+KT +++ G+N GSK  +A+ LGV++   ++F  L
Sbjct: 639 LEKLSRNQMNELIERAGGRASSSVSKKTSLVVAGENAGSKRARAESLGVRLAGPDEFAAL 698

Query: 718 LQQY 721
           +  +
Sbjct: 699 VADF 702


>gi|72080605|ref|YP_287663.1| DNA ligase [Mycoplasma hyopneumoniae 7448]
          Length = 693

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 210/736 (28%), Positives = 346/736 (47%), Gaps = 74/736 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-G 73
            Q R ++  L ++I   +  YYQ   P++ D  YD   R  + +      L   E+ N  
Sbjct: 6   SQIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQS 65

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+G ++     KV HS P LSL K ++ E+L K+  +     +     ++ F +EPK
Sbjct: 66  PSQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEKWAKKAREILK-----TVTFFVEPK 120

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  +++ Y+ G  + A  RGDG  GE+V      I        +N  E +EVRGE+YI
Sbjct: 121 IDGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPKKINYLEDLEVRGEIYI 180

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD---------------ITRYLNF 238
             + F +L      +  K + NPRNAASGILRR                      RYL  
Sbjct: 181 DNSTFASLQ-----LETKKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFRYLKS 235

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F + L    +     Q++ +  +R LGF VN   ++ +    + ++ + +K  R  L Y+
Sbjct: 236 FFYTLVNPEKHKINSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDFLNYN 295

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KV+EFS+ ++LG  ++ P   I+ KF +  A T+LL I   IGRTG +T  A++
Sbjct: 296 IDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTYNAKI 355

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G+ I++A L N  YI+ L            + +   V +K+AGE+IP+++  + 
Sbjct: 356 EPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQIIGSVH 404

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           N    +   FS    CP C S +V   +          +      C    L+++ HF S+
Sbjct: 405 NYPKTN---FSIVKNCPKCNSELVNSESGLD-------QFCQNQFCPEIILQKIVHFCSK 454

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR----------QQTSTTKIENIL 528
           +A NIE L +++++ F +       I    DIF L+ +          +    TK     
Sbjct: 455 NALNIESLAQKRIEKFLEK----GLISSACDIFYLKDKLELIYERLSNKNQLLTKQNASQ 510

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
                S+  L + + + +NI   R IF LGIR+VG + A+ L++Y  +            
Sbjct: 511 SMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELR------- 563

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
              N D+  L      G +I +++++++ N +N   +  L             N S+   
Sbjct: 564 ---NLDFNLLKNQHDFGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQSNSWA 620

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
                 +G L K  R +    + + GA     +++KTD +++G + GSK+EKA++ G+KI
Sbjct: 621 --SFAISGKLSK-PRDEYVRIIEESGASFHESVTKKTDFLLLGQSAGSKIEKAKKAGIKI 677

Query: 709 MNEEQFLFLLQQYNTT 724
           +NE QF  L++    T
Sbjct: 678 INEVQFFDLIKNSKKT 693


>gi|17546117|ref|NP_519519.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) protein
           [Ralstonia solanacearum GMI1000]
 gi|81505313|sp|Q8XZJ7|DNLJ_RALSO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|17428413|emb|CAD15100.1| putative dna ligase (polydeoxyribonucleotide synthase [nad+])
           protein [Ralstonia solanacearum GMI1000]
          Length = 813

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 225/679 (33%), Positives = 338/679 (49%), Gaps = 73/679 (10%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M K +       S        ++L   ++ +   YY   +P + D+EYD L R  +A+  
Sbjct: 1   MSKTEHPA----SGASPETRAAALRATLNRYAHEYYVLDQPSVPDAEYDRLYRELEALEA 56

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFW 118
             P+L     P+ P  ++GG +      V H +P LS+    +        F   + R  
Sbjct: 57  EHPEL---RTPDSPTLRVGGAVLPEFAPVRHVVPMLSIRTETDTTAGGALDFDASVRREL 113

Query: 119 QKKD-DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP--- 174
              + D  + +  E K DG  I +RYEKG  V AA RGDG +GEDV+  IR I  IP   
Sbjct: 114 GLAESDPPVEYAAELKFDGLAINLRYEKGFLVQAATRGDGATGEDVTQNIRTIRQIPLGL 173

Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR 234
           R +   +P+++EVRGEVY+ ++DF  LN      G K + NPRN A+G +R+L+P     
Sbjct: 174 RPVGGAVPDVLEVRGEVYMRRDDFERLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAE 233

Query: 235 YL-NFFVHGLGK--TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
              +FF +GLG+             ML  +   GFPV+          G+V ++  + + 
Sbjct: 234 RPLSFFAYGLGEAAGWSGMPDTHSGMLDALVAYGFPVSKERAAVKGGEGLVQFHAAIGAK 293

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R +LP+DIDG+VYKV+  +LQ++LG R R PRW ++HK+  ++A T +  I +Q+GRTG 
Sbjct: 294 RDSLPFDIDGVVYKVNSLALQRELGFRTREPRWAVAHKYPAQEALTTVESIGVQVGRTGA 353

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARL PV +GG  +TNATLHNED ++            +D+RVGD V+V+RAG+VIP
Sbjct: 354 ITPVARLVPVFVGGVTVTNATLHNEDEVRR-----------KDVRVGDTVIVRRAGDVIP 402

Query: 412 KVVDIIVNER---------------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456
           +VV +++  R                P   PF  P  CP+C S VVR+         A  
Sbjct: 403 EVVAVVLERRPMEDVPGSDLFNPTQQPKHPPFELPRSCPVCGSHVVREEGE------AVA 456

Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516
           RC+GGL CSAQ+ E ++HF  R   +IEGLG++ +D   + E     +   AD++ L   
Sbjct: 457 RCSGGLFCSAQRKEAIRHFAGRRMMDIEGLGERYIDNLVELE----YVHGIADLYRLTLD 512

Query: 517 QQTSTTKIENIL-----------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
                 +  +                     NL D I   +   L RF+F++GIRHVG  
Sbjct: 513 DFLEMKRRADERDGVTPETVAAGKIATKWAENLLDGIRASKTPPLARFLFAMGIRHVGES 572

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A++LA +  S     +    +          L+ +P VG  +A+AI +F+  P+N  A+
Sbjct: 573 TAKTLADWLGSLAIVRRAPAPL----------LLTLPDVGATVAEAIADFFAEPKNQQAL 622

Query: 626 EALLKEVSPSIGRHEKNVS 644
           +ALL       G H  +  
Sbjct: 623 DALLTAGVAPQGEHPPSAK 641



 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 17/167 (10%)

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LG+  + A  ++ LA    S    A      +     D             +A +++ +
Sbjct: 654 ALGVPKLTAIRSKQLATLVPSLAQLANVDTAQLEGLPAD-------------VAASLLAW 700

Query: 616 YQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
                +      ++AL  E+  ++          +  K +V TGTL  + R +A+  +  
Sbjct: 701 LDADDHRTRLGTLDALRAELLAAMPAGAAE-EGALSGKTVVLTGTLPTLSRDEAKAMLEA 759

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GA VS  +S+KTD ++ G   GSKL +AQ+LGV++++E   L LLQ
Sbjct: 760 AGAKVSGSVSKKTDYVVAGVEAGSKLARAQELGVRVLDEAGMLALLQ 806


>gi|322379711|ref|ZP_08054024.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS5]
 gi|321147860|gb|EFX42447.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS5]
          Length = 762

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 198/778 (25%), Positives = 327/778 (42%), Gaps = 97/778 (12%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++   L  ++  +   YY  + P+I D+ YD L R+       +P       P  P  ++
Sbjct: 6   EDYKHLVDKLCQYAYHYYVLASPLISDAIYDQLYRQVLDYETKYPQNIL---PYSPTQRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-----------IF 127
           GG +  +L K TH +   SLE ++N+E+L+ +I RI                        
Sbjct: 63  GGVVLETLPKHTHKVRMWSLENVFNLEELQVWINRIVESEHALKTKGRISQTYPSASFTR 122

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT  PK+DG  + + YE G+   A++RG+G  GE V+   + I +IP  L +   + IE+
Sbjct: 123 FTCSPKLDGASLNLYYENGQLQSASMRGNGLEGELVTHNAKTIHSIP--LIIPYTKPIEI 180

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT 246
           RGEV + + DF ALN E +      +AN RNA  G LR+L+      R L F+  GLG  
Sbjct: 181 RGEVVLQREDFKALNAERLKQNLPLFANARNATVGSLRQLDSKIAAQRKLTFYPWGLGLV 240

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            E +   +  M   ++  GF     V    +   I   +    + RS + +D DG+V  +
Sbjct: 241 EEKYTSLKQSMQM-VKDWGFLSLEFV-LCESLEAIEETFKLFHTRRSEVTFDADGMVVML 298

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+  LQ  LG   +SPR+  ++KF   +  T+LLD+  Q+GR+G +TPVA LEP+ + GA
Sbjct: 299 DDLYLQSILGFTIKSPRFGFAYKFPATEKHTKLLDVLNQVGRSGAITPVALLEPIKLEGA 358

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I+ ATL N   I+            + + + D V++ R+G+VIPK++  + + R+   +
Sbjct: 359 CISKATLDNYTQIQ-----------QQGLMINDTVVIVRSGDVIPKIIKPLKHLRNGTQK 407

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P + P+ CP CQS + +       +               +     K +           
Sbjct: 408 PITPPTHCPACQSVLQKQPLNVCPECNLPLLLKNKPNFCPKCQILFKKYTHCPVCQTLLG 467

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            + +     +S D  F          L+ ++      ++       +   N       + 
Sbjct: 468 KQHKKCPQCQS-DVTFPKHCLQCGGDLELKEYCYRCDLDLSNKDRYLFCPNKDCIARVKE 526

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYY------------------------LSYQNFAQ 582
           +I        L I+ +G ++   L +                             QN  Q
Sbjct: 527 SIVYFASKHGLEIKGLGDKVVAQLLQAGLIKGVIDLYSLEEKALLELEGWQQKKAQNLLQ 586

Query: 583 EINNIIAHN------------------------------NDDWLSLIRVPLVGD------ 606
            I                                     +  +  +  +   G       
Sbjct: 587 AITKSKQAPLWRFISALGIEHIGKGASKILAQHFGLEVFDKTYQEIASLEGFGAKGLKEE 646

Query: 607 --IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
              IA + V F     N   ++ LL  V+P I   +K   S  ++KK+V TG+L+K  R 
Sbjct: 647 EKKIAASFVRF--VKENKGLIKQLLTLVNP-IATEKKITPSFFKDKKIVITGSLEK-PRT 702

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +    +  LGA V   +S KTD++I G+NPGSKLEKA++LG+++M E  FL  L+   
Sbjct: 703 EISALLESLGAHVQTGVSSKTDLLIYGENPGSKLEKAKKLGIEVMEEVTFLERLKSEG 760


>gi|240047590|ref|YP_002960978.1| DNA ligase [Mycoplasma conjunctivae HRC/581]
 gi|239985162|emb|CAT05172.1| DNA ligase [Mycoplasma conjunctivae]
          Length = 673

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 209/719 (29%), Positives = 345/719 (47%), Gaps = 57/719 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   + ++++  L ++I   +  Y+    P + D  YD   ++   + + +  L   E+ 
Sbjct: 1   MENHEIKQQILQLRKKIENWNHEYFDLQNPSVDDLIYDEELKKLKILENKYYFLFSLEEL 60

Query: 72  NG-PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           N  P  +IG + +    KV HS P LSL K ++IE+L K++ +              F +
Sbjct: 61  NSSPTQQIGAQTSTKFNKVYHSSPMLSLNKAYDIEELEKWVKK------ANLVGEDNFYV 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           EPKIDG  I + Y+KGK   A  RGDG  GED+      I        +N  + +EVRGE
Sbjct: 115 EPKIDGLSIALIYKKGKLSSALTRGDGLQGEDILHNALRIANKFIPKQINYQQDLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI------TRYLNFFVHGLG 244
           ++IS  DF  L            ANPRNAASG+LRR+  T          YL+ F++ L 
Sbjct: 175 IFISNQDFQIL---QQNSNSSSLANPRNAASGLLRRIEKTSKNSKINDFDYLSCFIYNLV 231

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                  K   E    +  LGF +N     A     IV    +++ +R  L Y+IDG+V 
Sbjct: 232 NPQLHKIKNIKESYLFLEKLGFHLNPLSSLAKGLTNIVKQIGKIEKLRPQLEYNIDGVVI 291

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV+++ + +QLG  ++ P   I+ KF ++   T+LLDI   +GRTG +T  A+LEP+N+ 
Sbjct: 292 KVNDYEIYEQLGRTSKFPHGAIAFKFEDQIVQTKLLDIFATVGRTGKITYNAKLEPINLL 351

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  ++ A L N  YI+ L            I +   VLVK++GE+IP+++  + +     
Sbjct: 352 GTTVSAAILPNYKYIENL-----------KIAINSDVLVKKSGEIIPQIIASVQDH---Q 397

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A  F   S CP C   +V   +          +     AC A QL+++ HF S+ AFNI 
Sbjct: 398 ATNFQKISHCPSCNFELVDSPSGID-------QFCQNFACPAIQLKKIAHFCSKSAFNIA 450

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR-QQTSTTKIENILGFGDVSVTNLYDSIN 543
            L ++++     +      I+   DIF L+    +  +   +  +     S+TN  + I 
Sbjct: 451 SLAEKRIQTLIDTN----LIKNSCDIFFLKDNLDEMHSRFAKEKVKLKAKSITNFLNEIE 506

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             +     RFIF+LGI+++G + A+++AKY    +             N D+  L     
Sbjct: 507 LSKKNDFYRFIFALGIKNIGLKAAKAIAKYVGDVEQLI----------NFDFAQLENDYD 556

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            G I+ Q+++EF+ N  N   +    K+V  +    +K+            TG L K  R
Sbjct: 557 FGPIMVQSLLEFFANSNNQELL-NCFKKVDFAFKPTQKDFP-VWA--SFAITGKLSK-SR 611

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            + ++ + + GA   + L++KT  ++ G++ GSK+EKA+   + I+NEEQF  L+++  
Sbjct: 612 DQFEKIIVESGAQFDSNLNKKTTYLLAGESSGSKIEKAKAYNINIINEEQFWDLIEKQK 670


>gi|167647059|ref|YP_001684722.1| NAD-dependent DNA ligase [Caulobacter sp. K31]
 gi|190359242|sp|B0T1N5|DNLJ_CAUSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|167349489|gb|ABZ72224.1| DNA ligase, NAD-dependent [Caulobacter sp. K31]
          Length = 792

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 244/623 (39%), Positives = 342/623 (54%), Gaps = 35/623 (5%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +  L+  QA +EL  L  +++ HD  Y+Q   P I D+EYDALKRR   I   FP L 
Sbjct: 4   IAVADLTEAQAAEELERLADDLAAHDLRYHQQDAPTISDAEYDALKRRNLDIEDRFPHLV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R    N P  ++G         V H +P LSL+  ++ ++  +F  RI RF +   +  +
Sbjct: 64  RD---NSPSMRVGAARAEQFSPVEHGVPMLSLDNAFSNDEATEFDARIRRFLRLT-NEPV 119

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR------VLSLN 180
           F+T EPKIDG   ++RYEKG  V  A RGDG  GEDV+A +R I  IP            
Sbjct: 120 FYTAEPKIDGLSASLRYEKGVLVQGATRGDGRMGEDVTANLRTIADIPHRLRGGDPQGGG 179

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFF 239
            P++IE+RGEVY+    F A N   +  G++ YANPRN A+G LR+++P     R L FF
Sbjct: 180 WPDVIEIRGEVYVELEAFAAFNAAALEAGQRTYANPRNFAAGSLRQIDPKISAQRPLRFF 239

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
            +  G TSE FA  Q+E L K+R  GF        +     G++  Y + +  R  L +D
Sbjct: 240 AYAWGLTSEGFAATQWEALGKLRDWGFVTTAPPAERVQDAQGLLDIYAKFEVERPKLAFD 299

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKVD+   Q++LG  +RSPRW I+ KF  +QA T L  ID+Q+GRTG +TPVARL
Sbjct: 300 IDGVVYKVDDLEQQRRLGFVSRSPRWAIARKFPAQQARTILEAIDLQVGRTGAITPVARL 359

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV +GG  +TNATLHN D I             +D+R+GD V+++RAG+VIP++V  ++
Sbjct: 360 KPVTVGGVSVTNATLHNADEIAR-----------KDVRIGDTVILQRAGDVIPQIVGPVL 408

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
            ER   A PF FP+ CP      +   +   G      RC+G  AC  Q++E L+HFVSR
Sbjct: 409 EERPAGAVPFEFPTHCPCHLETPLVRESTAAGAETVVRRCSGEFACPFQRIEHLRHFVSR 468

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
            AF+IEGLG++QL  FF+       I+ PADIF L  R +    ++    G+G+ SV NL
Sbjct: 469 RAFDIEGLGEKQLAAFFEE----GWIKEPADIFKL-ARDEAKLAELRERDGYGETSVANL 523

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS------YQNFAQEINNII-AHN 591
              I  RR I L+R I+ LG+R +G   +  LA+ + S      +++             
Sbjct: 524 VKGIEARRTIGLDRVIYGLGMRDIGETTSTVLARNFASPKGKGGFEDLQAAAERAAGQLP 583

Query: 592 NDDWLSLIRVPLVGDIIAQAIVE 614
              +L L   P VG      +VE
Sbjct: 584 GAVYLELAGAPGVGPKARDELVE 606



 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 2/164 (1%)

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNI-IAHNNDDWLSLIRVPLVGDIIAQAIVE 614
              +  +      +LA+ Y  +  FAQ +         +D+L L  +  +G + AQ+I  
Sbjct: 628 GHAVPKLSKPARVALAERYGDWDTFAQALAQAGQGAPGEDYLQLAAIDGIGPVAAQSIAR 687

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+    N   V  L+ E+        K   + +  K +VFTG L+K+ R +A+     LG
Sbjct: 688 FFAEAHNREKVANLIAELDIQPVAKPK-TDTAVAGKTIVFTGALEKMTRDEAKAQAEGLG 746

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A V++ +S+KTD+++ G   GSKL+ A +LG+++M E+++L ++
Sbjct: 747 AKVASSVSKKTDLVVAGPGAGSKLKTATELGIQVMTEDEWLAMV 790


>gi|197301582|ref|ZP_03166655.1| hypothetical protein RUMLAC_00308 [Ruminococcus lactaris ATCC
           29176]
 gi|197299312|gb|EDY33839.1| hypothetical protein RUMLAC_00308 [Ruminococcus lactaris ATCC
           29176]
          Length = 662

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 182/711 (25%), Positives = 322/711 (45%), Gaps = 65/711 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +  ++ +  L + ++     Y Q +  I+ + EYD L    + +         ++  N P
Sbjct: 12  KSKQQRMRELVELLNRARKAYEQDNTEIMSNYEYDRLYDELEELEKE----LGTKMANSP 67

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +G E+   L K  H  P LSL+K   +E L++F+             +    +  K+
Sbjct: 68  TVNVGYEVVSGLPKERHERPMLSLDKTKEVERLKEFL------------GTKKAMISWKL 115

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I + Y+ G+ V A  RG+G  GE ++   +    +P  L +     + +RGE  IS
Sbjct: 116 DGLTIVLTYQGGELVKAVTRGNGIEGEVITNNAKVFQNVP--LHIPYQGELVLRGEAVIS 173

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253
             DF A+N+++  V    Y NPRN  SG +R+LN      R + FF   L +  E+    
Sbjct: 174 YKDFEAINEKIEDV-DAKYKNPRNLCSGSVRQLNNEITAKRNVKFFAFTLVRAEEVDFHN 232

Query: 254 -QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            +   +Q ++  GF V                +              DGLV   D+ +  
Sbjct: 233 SRMYQMQWLKEQGFDVVEHHPVTAETIEEEVAW--FAKAIGKNEIPSDGLVLVYDDIAYG 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  A+ PR   + K+A++   T LL+I+    RTG++ PVA  EPV + G  ++ A+
Sbjct: 291 QSLGTTAKFPRDSFAFKWADEIRETTLLEIEWSPSRTGLINPVAVFEPVELEGTTVSRAS 350

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           +HN   ++ L+           + VGD + V +A  +IP++ + +      D      P+
Sbjct: 351 VHNISIMEELE-----------LGVGDTIQVYKANMIIPQIAENLTRSGVKD-----IPT 394

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C       +  +T  L           C A+ ++    FVSRDA NIEGL +  L+
Sbjct: 395 VCPVCGGTTKISMENETKTL-----FCTNPECQAKHVKAFSLFVSRDAMNIEGLSEATLE 449

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            F         ++   D+F L R ++    +I+++ GFG+ S   L  +I   R  +L R
Sbjct: 450 KFILH----GYVKDFTDLFHLDRYEE----EIKSMDGFGEKSYQKLLRNIENARKTTLAR 501

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            I+SLGI ++G+  A+ + K +          ++           L+ +  +G I+A+  
Sbjct: 502 LIYSLGIPNIGSANAKVICKAFG---------DDPKRAEEATEEELVEIQGIGGIMAKTY 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVT 671
           VE++ +P++      LL EV        ++ S +      V TG+++    R + +  + 
Sbjct: 553 VEYFADPKHREIYRRLLDEVELQKEVVTED-SQKFSGINFVITGSVEHFANRAEVKAEIE 611

Query: 672 QLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           + G  V+  ++ KT  +I  D  +  SK +KA++LGV I++EE  + +L+Q
Sbjct: 612 KRGGKVTGSVTSKTGYLINNDVNSTSSKNKKARELGVPIISEETLIGMLEQ 662


>gi|308811310|ref|XP_003082963.1| COG0272: NAD-dependent DNA ligase (ISS) [Ostreococcus tauri]
 gi|116054841|emb|CAL56918.1| COG0272: NAD-dependent DNA ligase (ISS) [Ostreococcus tauri]
          Length = 808

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 236/793 (29%), Positives = 363/793 (45%), Gaps = 115/793 (14%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
             ++L++++AR+EL  L +E+++HD  YY   + +I DSEYD+L+ R  AI    P  AR
Sbjct: 61  APDSLTVDEARRELERLNEELAHHDRSYYNDGEGVISDSEYDSLRARYLAIERLHPSAAR 120

Query: 68  SEDPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           +    G   ++G   +    L K+ H+ P  SL   ++I  +  F+ R+ +   +     
Sbjct: 121 AL---GASARVGATPDDQSGLEKIAHATPMRSLGNAFDIAQVEAFVNRVEKAHGEI---- 173

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
                     G   ++RYE G       R D                 P  L    P ++
Sbjct: 174 ----------GVDASLRYENG-----FSRCD--------ETFSQARVRPTRLKAPYPAVL 210

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245
           E+RGEV++++ DF  +N E  A G + + N RNAA+G +R LN  D    L F  +G G 
Sbjct: 211 EIRGEVHVAEEDFRRVNAERAATGVRVFKNARNAAAGAMRLLNAEDNQMPLRFLAYGWGA 270

Query: 246 TSEIFAKGQYEMLQKMR-------CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
             E  A      + +           GF     +   +T  G++  Y  ++  R ++PY+
Sbjct: 271 AGETDADANAPWVTQSEFLSSFLPSQGFDAVPVLGVTSTVEGLMETYEALEIARPSMPYE 330

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+VYKV+  +LQ+ LG  AR PRW I+HKF    A T L  I+IQ+GRTG LTPV  L
Sbjct: 331 IDGVVYKVNSVALQQTLGADARQPRWAIAHKFTAMSAVTTLRAIEIQVGRTGALTPVGLL 390

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV+IGGA I  ATLHN D I           G + ++VG +V+V+RAG+VIP+VV +  
Sbjct: 391 DPVDIGGACIQRATLHNFDEI-----------GRKRLKVGAQVMVERAGDVIPRVVSLAG 439

Query: 419 NERHPDA---------QPFSFPSFCPICQ-SRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
            +    A           +  PS CP C  S V   L+     +    RCTGGL C +Q 
Sbjct: 440 EDLAEAAAYPEDALPLPEWLPPSKCPDCGASVVRAPLSASKNAMGTIVRCTGGLKCPSQS 499

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQR-------RQQTST 521
           +ERL HF SRDA +I GL +  L+   +       ++ PADIFTL+R           + 
Sbjct: 500 MERLLHFCSRDALDIRGLARATLETLHRE----GVVKTPADIFTLERRFGPDSGETVPTW 555

Query: 522 TKIENI-----------LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
            +   +            G    +V        +RR + L RFI++LGI ++GA  A+ L
Sbjct: 556 WRYTGVKNSKGEVKEGSDGLKASAVKLFQAIELRRRGVPLHRFIYALGIPNIGAHTAKVL 615

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWL--SLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
           A +Y+S   F +         +      +L  +  VG ++AQ++V+F+  P N   V  +
Sbjct: 616 ATHYVSLDAFRKASMAAAKGGSTSLAYGALTHIDGVGPVLAQSLVDFWGEPANASIVSEI 675

Query: 629 LKEVSPSIGRHEKNVSSE-----------------------------IENKKLVFTGTLQ 659
           +      +   E +  S                              +   K++FTGT+ 
Sbjct: 676 IANGVVVLDAAESSKPSSTRQPPAAPLSSATSAASTKPAEYSAPGANLTGAKILFTGTVD 735

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
              R      +    A V + LS KT  ++ G   G +KL KA  LGV I++   F+  L
Sbjct: 736 GYPRETVHRLIESASAEVVSSLSSKTTCVLAGSGAGPAKLAKASALGVPIIDAADFILAL 795

Query: 719 QQYN-TTLRIHDD 730
            +    ++    D
Sbjct: 796 DRGEPVSIPPRQD 808


>gi|119953337|ref|YP_945546.1| NAD-dependent DNA ligase LigA [Borrelia turicatae 91E135]
 gi|254781266|sp|A1QZY4|DNLJ_BORT9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119862108|gb|AAX17876.1| NAD-dependent DNA ligase [Borrelia turicatae 91E135]
          Length = 676

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 194/712 (27%), Positives = 342/712 (48%), Gaps = 55/712 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           I+    E+  L   I   +  YY  S P + D  YD    R   +   +P+       + 
Sbjct: 10  IKDIEDEILCLRDNIRKWNKEYYVDSSPSVSDLTYDKALLRLQDLESKYPEYKTL---DS 66

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K G ++  +  +VTHS P LSL+K ++I++L  +I ++          +   ++EPK
Sbjct: 67  PTLKFGSDLLNNFEEVTHSFPILSLDKAYDIKELLLWIEKMVLEGSSLGSYTG-ISVEPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I + Y+ G    A  RGDG  G DV+  +R I  +P  +   +   + +RGE+YI
Sbjct: 126 IDGCSIVLYYKDGILQKALTRGDGRVGNDVTENVRTIKNVPLSIDEKVE--LVLRGEIYI 183

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
           +K +FL +N  +    + PY N RN ASGILRR+N  ++  +           S      
Sbjct: 184 TKENFLKINHTL----KNPYLNARNLASGILRRINSREVASFPLDIFVYDILYSSFGLST 239

Query: 254 QYEMLQKMRCLGFPVNNGVRQA--NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
            ++   K++  GF +N   +         I ++  +++  R++L Y+IDG+V KVD F L
Sbjct: 240 NHDAFDKLKKFGFKINPFCKFFGGKNLEEITNHVKKIEMQRNSLEYEIDGVVLKVDSFIL 299

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +  LG  +  P+W +++KF      ++++DI +Q+GR+G +TPVA +E V + GA ITNA
Sbjct: 300 RDILGYTSHHPKWSVAYKFESCTGVSKIVDIVVQVGRSGKITPVAHVEKVFVAGAFITNA 359

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN+DYI  +            + VGD V + R G+VIP V  ++          F   
Sbjct: 360 SLHNQDYIDSI-----------GLNVGDVVAISRRGDVIPAVELVVEKLSIGS---FKIS 405

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           S CP C+  ++++ +         H       C  + +E++K+F S+   NI GL  + +
Sbjct: 406 SNCPSCKMALIKEGS---------HLFCVNKHCPYRIIEQIKYFCSKKCMNIVGLSGKTI 456

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +F F+ +     I    +++T       +  ++ N+ GF    + NL  SI+  +     
Sbjct: 457 EFLFEMK----FISSEIELYT------FNFDRLINLRGFDLKRIDNLKRSISDSKGRPFR 506

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +  +GI+ +GA     L     +  N    I+ +  +       L+++  +G+ IA  
Sbjct: 507 KLLLGMGIKELGANTILVLIN---NNLNSFDIISTLCKNKEAALAKLLKIKGIGEKIALN 563

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQE 668
           I+E + +   +       KE+   +  +  N     S +  KK   TG+ +   R    E
Sbjct: 564 IIEAFNDKIILDKF-NFFKELGFKLEEYNTNYVVDDSFLFGKKFCITGSFEGHSRDVLIE 622

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI---MNEEQFLFL 717
            +T+ GA+ +  ++++ D ++VG+ PG KL+KA  LG+K     + + F+ L
Sbjct: 623 KITKKGAIFNRAVTKRLDFLLVGEKPGLKLQKANNLGIKTFGLFDIKDFVDL 674


>gi|311900456|dbj|BAJ32864.1| putative DNA ligase [Kitasatospora setae KM-6054]
          Length = 718

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 197/733 (26%), Positives = 318/733 (43%), Gaps = 99/733 (13%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           YY      + D EYDAL R   A   A P+   +   + P  K+ G        V HS+P
Sbjct: 34  YYGDGTTTLGDDEYDALVRAIAAYEEAHPEELLA---DSPTGKVAGGAAEG--DVPHSVP 88

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+ +++ E+L  +   + R   +       + +EPK+DG  I  RYE G       R
Sbjct: 89  MLSLDNVFSGEELADWAASLERRLGRAPAG---WCVEPKLDGLAIAARYEGGALRRVLTR 145

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           G+G +GED++     +  +P VL+  +   +E+RGEV ++   F   N+   A G  P+A
Sbjct: 146 GNGLAGEDITHTAGDVLGLPAVLAEPV--DVELRGEVLLTHAQFERANEIRTAHGAVPFA 203

Query: 215 NPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI-----------------FAKGQYEM 257
           N RN A+G LR  +         F    +G                       A     +
Sbjct: 204 NARNGAAGTLRAKDRPYRIELTFFAYDAVGLDENPGEKPGETPDETPGQAPSRALDHSAL 263

Query: 258 LQKMRCLGFPVNNGVR----QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           L+++  LG            +  +   +     ++ ++R  LP+ IDG+V K D  + Q+
Sbjct: 264 LERLAALGANTAASTAAAPLRCESIEEVQRRIEQITALRPQLPFGIDGVVVKADAAADQE 323

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           + G  +R+PRW ++ K A +   TRLL+++  +GRTGI+ P A LEPV I G  +T ATL
Sbjct: 324 RAGSGSRAPRWAVARKLAAEHKVTRLLEVEWAVGRTGIIAPRAVLEPVVIDGVTVTYATL 383

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN   I+            R + +GDRV V RAG+VIP+V   +V ER  + +P  FP+ 
Sbjct: 384 HNPADIER-----------RGLMLGDRVFVYRAGDVIPRVEAPLVEERTGEERPIVFPAA 432

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C                   RC  G  C A     + +   RD  +IEGLG  +   
Sbjct: 433 CPRC--------GEAIDSSEQRWRCVRGRNCQAV--ASIIYAAGRDQLDIEGLGSTRAVQ 482

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +    A  +R  AD+FTL R Q         +   G+ S  NL  +I   R   L R 
Sbjct: 483 LVE----AGLVRDLADVFTLTREQLLG------LERMGETSTDNLLAAIATARTRPLGRV 532

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           + +LG+R  G  ++R +A ++ S                 D  +L  V  +G   A+ +V
Sbjct: 533 LCALGVRGTGRSMSRRIAAHFGSMAAIRAA----------DAETLAAVEGIGPEKARLVV 582

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEK---------------------NVSSEIENKKL 652
                      ++ L +    +     +                       +  +  + +
Sbjct: 583 SELAELT--TLLDRLAELGVGTQVTAPQRPTAPKPAAEETGEAAEDADAPAAGPLSGEAV 640

Query: 653 VFTGTLQK----IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
           V TG++      + R++  E V + G   S+ +S++T +++ G+  GSK  KA++LG++I
Sbjct: 641 VVTGSMTGALAALTRNEMNELVERAGGKASSAVSKRTTLLVAGEKAGSKRAKAEELGIRI 700

Query: 709 MNEEQFLFLLQQY 721
           +  E F  LL  +
Sbjct: 701 LTPEDFATLLADH 713


>gi|182413875|ref|YP_001818941.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1]
 gi|254778152|sp|B1ZMR3|DNLJ2_OPITP RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|177841089|gb|ACB75341.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1]
          Length = 708

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 209/706 (29%), Positives = 330/706 (46%), Gaps = 49/706 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           ++ + L  L  EI+ HDD Y++ ++P I D++YDALK+    +   F      +     L
Sbjct: 42  ESLRRLELLRVEIARHDDLYFRKAQPEISDADYDALKQELRELESRFGRRVPRDPA--AL 99

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +G +      K  H +  LSLEK      +R F   + R    K    I + +EPK D
Sbjct: 100 RDMGDDRVSGFPKARHRMRMLSLEKTTTESGVRAFDQALRRLV--KPPAEIAYVVEPKFD 157

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194
           G  I+  YE+G+ V    RG+G  G+DV+A    I T+P  L+    P ++EVRGEV+++
Sbjct: 158 GLAISATYEEGRLVRLVTRGNGEEGDDVTAAAGRIRTLPPRLAGAAWPRVVEVRGEVFLT 217

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRR---LNPTDITRYLNFFVHGLGKTSEIFA 251
             +F  +N      GR  +++PRN A G L+     +       + FF  G         
Sbjct: 218 FAEFERINRGRRENGRPTFSSPRNLAVGTLKSLEPEDREVRQLDVVFFGLGAIDGHAA-P 276

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q ++L+ +   G P     R+ ++         E+   RS L + IDG V K+D+   
Sbjct: 277 ASQTQLLEWIAQWGLPSVEDARRVDSIDDAWRAVQELGGRRSHLAFPIDGAVIKLDDAVG 336

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           Q   G    +PRW I+ K+A  +  TR+  + +Q+GRTG++TPVA LEPV + GA IT A
Sbjct: 337 QTAAGVSEVAPRWAIAFKYAPARVGTRVRGVALQVGRTGVITPVAELEPVALAGARITRA 396

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN   ++             D+RVGD V ++R GE+IP VV +   +R   + PF FP
Sbjct: 397 TLHNASEMER-----------SDLRVGDFVWIERMGEIIPAVVAVDTAQRGTVSAPFVFP 445

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C + +VR L+       A  RCT    C A+Q+ +++H+VS +   I GLG   +
Sbjct: 446 RDCPGCGALLVRALD------DANWRCTND-DCPARQVRKVEHYVSDEGVGIRGLGAASV 498

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +   +S+     +R   D++TL   + T+ T               + D+I + R   L 
Sbjct: 499 EALVRSQR----VREIPDLYTLTAAEVTAHT------RLSAAQAARVVDAIQRSRKAPLR 548

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R I  LG+  +G   A +L   +     FA    +           L +V  +     +A
Sbjct: 549 RVIAGLGLPGIGPAGANALGARFADLPQFAAARES----------DLQQVEGLRPESVRA 598

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           +       R    +  L         +     +  +  K++VFTGTL  + R +A E V 
Sbjct: 599 LATALSAERTQQLLARLAAAGV--GAQSATADAGTLAGKEVVFTGTLPTLSRRRATELVE 656

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           + G  V+  ++  T  ++ G NP SKL +A  LGV ++ E + L L
Sbjct: 657 EAGGRVADRVTAATWRLVAGRNPASKLHQATALGVPVIEEAELLRL 702


>gi|54020343|ref|YP_115627.1| DNA ligase [Mycoplasma hyopneumoniae 232]
 gi|81378764|sp|Q601T8|DNLJ_MYCH2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|53987516|gb|AAV27717.1| DNA ligase [Mycoplasma hyopneumoniae 232]
          Length = 692

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 211/736 (28%), Positives = 345/736 (46%), Gaps = 74/736 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-G 73
            Q R ++  L ++I   +  YYQ   P++ D  YD   R  + +      L   E+ N  
Sbjct: 5   SQIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQS 64

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+G ++     KV HS P LSL K ++ E+L K+  +     +     ++ F +EPK
Sbjct: 65  PSQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEKWAKKAREILK-----TVTFFVEPK 119

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  +++ Y+ G  + A  RGDG  GE+V      I        +N  E +EVRGE+YI
Sbjct: 120 IDGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPKKINYLEDLEVRGEIYI 179

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD---------------ITRYLNF 238
             + F +L      +  K + NPRNAASGILRR                      RYL  
Sbjct: 180 DNSTFASLQ-----LETKKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFRYLKS 234

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F + L    +     Q++    +R LGF VN   ++ +    + ++ + +K  R  L Y+
Sbjct: 235 FFYTLVNPEKHKINSQFDSTNFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDFLNYN 294

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KV+EFS+ ++LG  ++ P   I+ KF +  A T+LL I   IGRTG +T  A++
Sbjct: 295 IDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTYNAKI 354

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G+ I++A L N  YI+ L            + +   V +K+AGE+IP+++  + 
Sbjct: 355 EPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQIIGSVH 403

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           N    +   FS    CP C S +V   +          +      C    L+++ HF S+
Sbjct: 404 NYPKTN---FSIVKNCPKCNSELVNSESGLD-------QFCQNQFCPEIILQKIVHFCSK 453

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR----------QQTSTTKIENIL 528
           +A NIE L +++++ F +       I    DIF L+ +          +    TK     
Sbjct: 454 NALNIESLAQKRIEKFLEK----GLISSACDIFYLKDKLELIYERLSNKNQLLTKQNASQ 509

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
                S+  L + + + +NI   R IF LGIR+VG + A+ L++Y  +            
Sbjct: 510 SMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELR------- 562

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
              N D+  L      G +I +++++++ N +N   +  L             N S+   
Sbjct: 563 ---NLDFNLLKNQHDFGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQSNSWA 619

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
                 +G L K  R +    + + GA     L++KTD +++G + GSK+EKA++ G+KI
Sbjct: 620 --SFAISGKLSK-PRDEYVRIIEESGASFHESLTKKTDFLLLGQSAGSKIEKAKKAGIKI 676

Query: 709 MNEEQFLFLLQQYNTT 724
           +NE QF  L++    T
Sbjct: 677 INEVQFFDLIKNSKKT 692


>gi|56807783|ref|ZP_00365637.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Streptococcus pyogenes M49 591]
          Length = 571

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/617 (30%), Positives = 314/617 (50%), Gaps = 48/617 (7%)

Query: 102 WNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGE 161
           +  E+L  F  R+       +  +  +  E KIDG  I++ YE G     A RGDG+ GE
Sbjct: 2   FFREELDAFDKRVK-----AEFPNATYLAELKIDGLSISLSYENGFLQVGATRGDGNIGE 56

Query: 162 DVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAAS 221
           +++  I+ I  IP  LS  +   I VRGE Y+S+  F A+N+     G   +ANPRNAA+
Sbjct: 57  NITENIKKIKDIPHQLSEPL--TITVRGEAYMSRQSFKAINEARQENGETEFANPRNAAA 114

Query: 222 GILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI 281
           G LR+L+   +            + S      Q E+L ++  LGF VN   +  ++   I
Sbjct: 115 GTLRQLDTAVV-AKRELATFLYQEASPTARNQQNEVLAELADLGFSVNPYYQLTSSMDEI 173

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341
             +   +++ R  L YDIDG+V KV+  ++Q++LG   ++PRW I++KF  ++    +L 
Sbjct: 174 WDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGFTVKAPRWAIAYKFPAEEKEAEILS 233

Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401
           +D  +GRTG++TP A L PV + G  ++ ATLHN DYI             +DIR+GD V
Sbjct: 234 VDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AEKDIRIGDTV 282

Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461
           +V +AG++IP V+++++++R+        P  CP C S +V   +        A RC   
Sbjct: 283 IVYKAGDIIPAVLNVVMSKRNQQEVMLI-PKLCPSCGSELVHFEDE------VALRCINP 335

Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
           L C +     L+HF SRDA NI GLG   ++  F     A  +   ADI+ L +      
Sbjct: 336 L-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF----LAGFVHDVADIYQLTKENFM-- 388

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
                + G  + S   L  +I   ++ S E+ +F LGIRH+G++++R + + Y       
Sbjct: 389 ----QLDGIKEKSADKLLAAIEASKSNSAEKLLFGLGIRHIGSKVSRLILEVYGDISALL 444

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR-HE 640
                           + R+  +G  IAQ++ ++++       V+ L            +
Sbjct: 445 TAKE----------EEIARIDGLGSTIAQSLTQYFEQKTAAILVDELKTAGVNMHYSGQK 494

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
            N  + +    +V TG L ++ R++A++ +  LGA V+  +S+KTD++I G + GSKLEK
Sbjct: 495 VNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAKVTGSVSKKTDLVIAGSDAGSKLEK 554

Query: 701 AQQLGVKIMNEEQFLFL 717
           A+ LG++I +E+    L
Sbjct: 555 AKSLGIRIEDEDWLRQL 571


>gi|228982993|ref|ZP_04143252.1| DNA ligase, NAD-dependent [Bacillus thuringiensis Bt407]
 gi|228777176|gb|EEM25484.1| DNA ligase, NAD-dependent [Bacillus thuringiensis Bt407]
          Length = 669

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 206/720 (28%), Positives = 339/720 (47%), Gaps = 72/720 (10%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
             +++  L +E+  HD  Y     PII DSEYD +     ++    P+ A   D N P  
Sbjct: 2   IEQKIKQLREEVMKHDLLY-DEGTPIITDSEYDQMYYELVSLEEKHPEFA---DENSPTK 57

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +I   +  SL K+ HS P LS +K    ED+ KF  +          +        K DG
Sbjct: 58  RIYSVVVDSLKKIKHSTPMLSQDKGHTEEDIVKFANK----------SDDEIIAGDKEDG 107

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I ++Y  G +  A+ RGDG+ GEDV+  +R I  +P    ++    +EVR E  I  +
Sbjct: 108 LTIVLKYNNGIYYEASTRGDGYIGEDVTHTVRTITNLP--KKISFKGYLEVRAESVIPFS 165

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQY 255
           +F  +N          Y +PRN  SG +R LN        L+     L K   I  +   
Sbjct: 166 EFERINV------DGKYKSPRNLVSGSVRTLNANIAKERGLSIIAFDLVKAEGITFEKDT 219

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM----KSIRSTLPYDIDGLVYKVDEFSL 311
           E L+ ++  GF V       NT  GI           K +R T+P+ IDGLV K +  ++
Sbjct: 220 EQLEFLKEQGFNVVPYKVFKNTPEGIKELIQYCLTYNKEVRPTIPHMIDGLVLKFNNLAV 279

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           ++ LG  ++ PRW  + KF    A+T+LL+I   +G++G +TP    EPV I G  I  A
Sbjct: 280 RESLGYTSKFPRWGFAFKFDSLDATTKLLNIVETVGKSGQITPNGIFEPVEIDGVTIQKA 339

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +L N D IK            RDIR+GD ++V RA +VIP++V  +   R    +    P
Sbjct: 340 SLANYDNIK-----------ERDIRIGDTIVVARANDVIPQIVSAVTELRDGTEKEILPP 388

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP+C             +    H       CSAQQ   LKHFVSR+A NI+GLG + +
Sbjct: 389 TCCPVC-------KGEVVKEEDNVHYFCINSTCSAQQERILKHFVSRNAMNIDGLGAKTV 441

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           + F++       +   +DI+TL+     +  K+  + GFG+  +  +   I + +++ L 
Sbjct: 442 ETFYEK----GILSSISDIYTLKD----NLDKLSVLRGFGEKKIQKMLSGIEESKHVPLS 493

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           +F+++L I +VG+   + +AK + + ++  +   + +         L+++  +G+ +A +
Sbjct: 494 KFLYALAIPNVGSSTGKDIAKKFKTMRHLIELSKDPVVLKT----ELMKIDGIGETVASS 549

Query: 612 IVEFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           +V +++   NI  +E L     +      E   S EIE K  V TG+L K  R+  ++ +
Sbjct: 550 MVSYFEESHNIELIEFLYSIGFTMMEEVEEIIASEEIEGKIFVITGSLSK-PRNDIKKEI 608

Query: 671 TQLGAVVSAILSRKTDIIIVG------------DNPGSKLEKAQQLGVKIMNEEQ-FLFL 717
              G  VS  +S KT+ +++G            +   SK + A +    I++EE+ F  +
Sbjct: 609 EARGGKVSGSVSAKTNFLVLGGYNHVTGELPEKETNSSKYKNAVKFECPIISEEELFAKM 668


>gi|326201860|ref|ZP_08191730.1| DNA ligase, NAD-dependent [Clostridium papyrosolvens DSM 2782]
 gi|325987655|gb|EGD48481.1| DNA ligase, NAD-dependent [Clostridium papyrosolvens DSM 2782]
          Length = 657

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 175/711 (24%), Positives = 308/711 (43%), Gaps = 65/711 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + +    + ++     YYQ +  I+ + EYD L      +             N 
Sbjct: 1   MADKIQLMKDKIEILNKAAKAYYQENTEIMPNIEYDKLYDELLELEKE----TGVVLSNS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E+  +L K  H  P LSL+K   +  L+++I             +    L  K
Sbjct: 57  PSIHVGYELLSNLPKERHEKPMLSLDKTKEVGALKEWI------------GTQKGILSWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + Y+ G  V A  RG G  GE ++   R    +P  +++   + + +RGE  I
Sbjct: 105 LDGLTIVLTYQDGHLVKAVTRGTGEVGEVITNNARVFRNLP--VTIAYKDTLILRGEAII 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFA 251
             +DF+ +N+E+  V    Y NPRN  SG +R+LN           F    +   +    
Sbjct: 163 RYSDFIKINNEISDVD-AKYKNPRNLCSGSVRQLNNKVTSERNVYFFAFSLVKADNVELE 221

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             +   +  ++  GF +       +        +              DGLV   D  + 
Sbjct: 222 NSRASQMNWLKNQGFDIVEFKEVTSNDIEETVQWF--SQNIEANDLPSDGLVLTFDNIAY 279

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            + LG  A+ PR  I+ K+ ++   T LL+I+    RTG++ P+A  EPV + G  ++ A
Sbjct: 280 GESLGSTAKFPRDSIAFKWRDEIKETTLLEIEWSASRTGLINPIAIFEPVELEGTTVSRA 339

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           ++HN   ++GL+           + +GD + V +A  +IP++ + +             P
Sbjct: 340 SIHNLSIMEGLE-----------LGIGDTIGVYKANMIIPQISENLTRSGMA-----PIP 383

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C  +          +            C A+Q++   HFVSRDA NIEGL +  L
Sbjct: 384 EECPVCSGKT-----EIKQENGVKTLYCVNNECLAKQIKSFTHFVSRDAMNIEGLSEATL 438

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +           I+  AD+F ++  +     +I  + G G+ S   L  SINK R  +  
Sbjct: 439 EKLIAK----GLIKELADLFHIEMYKN----EIIEMEGLGEKSFNKLIASINKARKTTAI 490

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R ++SLGI +VG   A+ + KY+           +     N D+  LI++  +GDI+A++
Sbjct: 491 RLLYSLGIPNVGLSNAKLICKYFK---------YDWNNIENADFTELIQIGGIGDIMAES 541

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670
            + F+ + +    V  +LKE+               EN   V TG+++  + R + +  +
Sbjct: 542 FISFFADEKKRIIVHDVLKELELE-EVQVSQSEQIFENVNFVITGSVEMFKNRDELKGVI 600

Query: 671 TQLGAVVSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + G  V+  ++ KT+ +I  DN    SK +KA++L + I+ E QF+  + 
Sbjct: 601 EEKGGKVTGSVTSKTNYLINNDNLSNSSKNKKAKELNISIITEAQFVEWIN 651


>gi|260588405|ref|ZP_05854318.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
 gi|260541279|gb|EEX21848.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
          Length = 644

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 173/702 (24%), Positives = 310/702 (44%), Gaps = 63/702 (8%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E+ ++ +++   +  YYQ S+ I+ + +YD L  +   +             + P   + 
Sbjct: 3   EMRAIIEQLKAANVAYYQESREIMSNYDYDKLYDKLVDMEKE----TGVIYSDSPTQSVA 58

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +    L K  H    LSL+K  ++E L+ +I            +     L  K+DG  +
Sbjct: 59  NDFLDFLPKEKHEKKMLSLDKTKSVETLKSWI------------SDKDGILSWKLDGLTV 106

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            + Y+ G+   A  RG+G +GE ++  +     +P  L +   E + +RGE  IS  DF 
Sbjct: 107 VLTYDNGELQKAVTRGNGTTGEIITQNVSRCKGVP--LKIPYKEKLILRGEAVISYTDFD 164

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
            +N ++  VG   Y NPRN ASG +R L+ ++ ++  N  V      S    K   +   
Sbjct: 165 RINSQIEDVG-ARYKNPRNLASGSIRLLDASE-SQKRNVQVIIFRLISGSKFKTMDKQFN 222

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +  +GF V                + + K   +      DGLV   +       LG  +
Sbjct: 223 WLSEIGFNVVEHYPVNKDNIEECVKFFKRKIENN--DIPTDGLVVSYNNTDYGNSLGNTS 280

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           +  R   + K+ ++ A T L  I+    RTG+L PVA  EPV + G  ++ A++HN   I
Sbjct: 281 KFERHSFAFKWKDEVAETTLKKIEWSPSRTGLLNPVAIFEPVELEGTTVSRASVHNISII 340

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           K L            + +GD + V ++  +IP++V+      + D      P  CPIC  
Sbjct: 341 KEL-----------KLGIGDTIKVIKSNMIIPQIVENSTKSNNLD-----IPKQCPICGG 384

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
                 +  T  L+          C  + + +  HF  RDA NIEG+ +  +DF  K   
Sbjct: 385 DTNIICSNDTEVLM-----CMNTHCPEKLIGKFVHFCERDAMNIEGMSEATVDFLVKK-- 437

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               ++   D + L + +        +I GFG  SV  L+ SI K + +S ER +++LGI
Sbjct: 438 --GWLKTFKDFYNLSQYKA----TWMSIPGFGKKSVEKLFLSIEKSKQVSPERLLYALGI 491

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
             +G   +R +  ++ ++ +  + +               ++   GD++ ++I ++++  
Sbjct: 492 PKIGRSQSREIFNHFDTWDDLIKSMKEKF--------DFSKLDGFGDVLNKSIYDWFKED 543

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVS 678
                +E L+K +        + + S + NK  V TG+L K   R+  +  +   G  V+
Sbjct: 544 YKSEEIEQLVKILVFEEKIKTEELLS-LTNKTFVITGSLNKFSNRNDLKSTIETHGGKVT 602

Query: 679 AILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
             ++ KT  +I  D  +  SK +KA++LG+ I++EE+FL LL
Sbjct: 603 GSVTSKTHYLINNDTTSNSSKNKKAKELGIPIISEEEFLTLL 644


>gi|330830678|ref|YP_004393630.1| NAD-dependent DNA ligase LigA [Aeromonas veronii B565]
 gi|328805814|gb|AEB51013.1| NAD-dependent DNA ligase LigA [Aeromonas veronii B565]
          Length = 787

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 201/624 (32%), Positives = 324/624 (51%), Gaps = 43/624 (6%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
               L + ++ +   YY    P + D+EYD L R   A+    P+L     P  P  ++G
Sbjct: 7   RHRQLCELLTEYGHQYYVLDNPTVPDAEYDRLMRELIALEADHPELK---TPASPSVRVG 63

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
           G+   +  +V H IP LSL+ +++ E+L+ F  R+    ++  D    F  EPK+DG  +
Sbjct: 64  GQPLTAFSQVRHEIPMLSLDNVFSSEELQAFEQRMSDRLKR--DVRFTFCCEPKLDGLAV 121

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDF 198
           ++ Y  G+ V AA RGDG +GE+++  +R I  IP  L  +  P+ +EVRGEV++ K  F
Sbjct: 122 SLLYVNGQLVQAATRGDGATGEEITENVRTIKAIPLALRGSGWPDRLEVRGEVFMPKAGF 181

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
            A+N + +A G K + NPRNAA+G LR+L+     +R L+F+ +G+G   E+     +  
Sbjct: 182 EAMNAKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYGVGVGGELLGDSHFGR 241

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L +++  G P++  V+      G  ++++++ + R  LPY+IDG+VYKVD   LQ++LG 
Sbjct: 242 LNQLKAWGLPLSPEVKLKEGAAGCQAFHDDILARRGELPYEIDGVVYKVDAIPLQEELGF 301

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            AR+PRW  +HKF  ++  T L +++ Q+GRTG +TPVA+L+PV +GG  ++NATLHN D
Sbjct: 302 VARAPRWATAHKFPAQEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHNAD 361

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+ L            + VGD V+V+RAG+VIP++V ++  +R  DA+   FP+ CP+C
Sbjct: 362 EIERL-----------GVMVGDTVIVRRAGDVIPQIVAVVEAQRPSDARAILFPTECPVC 410

Query: 438 QSRVVRDLNPKT------GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
            S +V++            K++A  +CTGGL C AQ  E LKHFVSR+A +IEG+G + +
Sbjct: 411 GSDIVQEKKIVQQKTKTLEKILATRKCTGGLNCLAQVKESLKHFVSRNAVDIEGVGDKVI 470

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +           ++ PAD+F L             +                   +    
Sbjct: 471 EQLVD----GGLVKHPADLFRLSVDDFLKLDGFAEVSAKNAFDAIQAKIGTTSSID---- 522

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            F+F LGI  VG  +A  L        N       I          + ++  +G  I   
Sbjct: 523 -FLFGLGIPSVGQVVAERLIVELGCLDNIISAPRGI----------ISQINGIGLDIDAE 571

Query: 612 IVEFYQNPRNICAVEALLKEVSPS 635
           I +++       +V  L   +   
Sbjct: 572 ISDYFSAASVSDSVMELADVMGVE 595



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 48/86 (55%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
               +   S I  K  V TG+   + R K    + +LG      +S+ TD++I+GD  GS
Sbjct: 700 SEPAEKSDSFIAGKSFVITGSFTFMSRDKLNSKLKELGGESKTSVSKNTDMLIMGDKAGS 759

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYN 722
           KL+KA +LG+KI+NE++   LL+  N
Sbjct: 760 KLKKATELGIKIINEDELRSLLESEN 785


>gi|166215831|sp|Q4AA72|DNLJ_MYCHJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|144227540|gb|AAZ44349.2| DNA ligase [Mycoplasma hyopneumoniae J]
          Length = 692

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 211/736 (28%), Positives = 346/736 (47%), Gaps = 74/736 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-G 73
            Q R ++  L ++I   +  YYQ   P++ D  YD   R  + +      L   E+ N  
Sbjct: 5   SQIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQS 64

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+G ++     KV HS P LSL K ++ E+L K+  +     +     ++ F +EPK
Sbjct: 65  PSQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEKWAKKASEILK-----TVTFFVEPK 119

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  +++ Y+ G  + A  RGDG  GE+V      I        +N  E +EVRGE+YI
Sbjct: 120 IDGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPKKINYLEDLEVRGEIYI 179

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD---------------ITRYLNF 238
             + F +L      +  K + NPRNAASGILRR                      RYL  
Sbjct: 180 DNSTFASLQ-----LETKKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFRYLKS 234

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F + L    +     Q++ +  +R LGF VN   ++ +    + ++ + +K  R  L Y+
Sbjct: 235 FFYTLVNPEKHKINSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDFLNYN 294

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KV+EFS+ ++LG  ++ P   I+ KF +  A T+LL I   IGRTG +T  A++
Sbjct: 295 IDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTYNAKI 354

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G+ I++A L N  YI+ L            + +   V +K+AGE+IP+++  + 
Sbjct: 355 EPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQIIGSVH 403

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           N    +   FS    CP C S +V   +          +      C    L+++ HF S+
Sbjct: 404 NYPKTN---FSIVKNCPKCNSELVNSESGLD-------QFCQNQFCPEIILQKIVHFCSK 453

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR----------QQTSTTKIENIL 528
           +A NIE L +++++ F +       I    DIF L+ +          +    TK     
Sbjct: 454 NALNIESLAQKRIEKFLEK----GLISSACDIFYLKDKLELIYERLSNKNQLLTKQNASQ 509

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
                S+  L + + + +NI   R IF LGIR+VG + A+ L++Y  +            
Sbjct: 510 SMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELR------- 562

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
              N D+  L      G +I +++++++ N +N   +  L             N S+   
Sbjct: 563 ---NLDFNLLKNQHDFGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQSNSWA 619

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
                 +G L K  R +    + + GA     L++KTD +++G + GSK+EKA++ G+KI
Sbjct: 620 --SFAISGKLSK-PRDEYVRIIEESGASFHESLTKKTDFLLLGQSAGSKIEKAKKAGIKI 676

Query: 709 MNEEQFLFLLQQYNTT 724
           +NE QF  L++    T
Sbjct: 677 INEVQFFDLIKNSKKT 692


>gi|71893614|ref|YP_279060.1| DNA ligase [Mycoplasma hyopneumoniae J]
          Length = 693

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 211/736 (28%), Positives = 346/736 (47%), Gaps = 74/736 (10%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-G 73
            Q R ++  L ++I   +  YYQ   P++ D  YD   R  + +      L   E+ N  
Sbjct: 6   SQIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQS 65

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+G ++     KV HS P LSL K ++ E+L K+  +     +     ++ F +EPK
Sbjct: 66  PSQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEKWAKKASEILK-----TVTFFVEPK 120

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  +++ Y+ G  + A  RGDG  GE+V      I        +N  E +EVRGE+YI
Sbjct: 121 IDGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPKKINYLEDLEVRGEIYI 180

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD---------------ITRYLNF 238
             + F +L      +  K + NPRNAASGILRR                      RYL  
Sbjct: 181 DNSTFASLQ-----LETKKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFRYLKS 235

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           F + L    +     Q++ +  +R LGF VN   ++ +    + ++ + +K  R  L Y+
Sbjct: 236 FFYTLVNPEKHKINSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDFLNYN 295

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V KV+EFS+ ++LG  ++ P   I+ KF +  A T+LL I   IGRTG +T  A++
Sbjct: 296 IDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTYNAKI 355

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G+ I++A L N  YI+ L            + +   V +K+AGE+IP+++  + 
Sbjct: 356 EPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQIIGSVH 404

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           N    +   FS    CP C S +V   +          +      C    L+++ HF S+
Sbjct: 405 NYPKTN---FSIVKNCPKCNSELVNSESGLD-------QFCQNQFCPEIILQKIVHFCSK 454

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR----------QQTSTTKIENIL 528
           +A NIE L +++++ F +       I    DIF L+ +          +    TK     
Sbjct: 455 NALNIESLAQKRIEKFLEK----GLISSACDIFYLKDKLELIYERLSNKNQLLTKQNASQ 510

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
                S+  L + + + +NI   R IF LGIR+VG + A+ L++Y  +            
Sbjct: 511 SMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELR------- 563

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
              N D+  L      G +I +++++++ N +N   +  L             N S+   
Sbjct: 564 ---NLDFNLLKNQHDFGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQSNSWA 620

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
                 +G L K  R +    + + GA     L++KTD +++G + GSK+EKA++ G+KI
Sbjct: 621 --SFAISGKLSK-PRDEYVRIIEESGASFHESLTKKTDFLLLGQSAGSKIEKAKKAGIKI 677

Query: 709 MNEEQFLFLLQQYNTT 724
           +NE QF  L++    T
Sbjct: 678 INEVQFFDLIKNSKKT 693


>gi|289663144|ref|ZP_06484725.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 833

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 223/690 (32%), Positives = 353/690 (51%), Gaps = 92/690 (13%)

Query: 12  LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           +++     + + +L   I   +  Y+   +P + D +YD L R  +A+   +P LA    
Sbjct: 1   MTVSPDPAQRIDALRSRIEDANYRYHVLDEPQMADVDYDRLMRELEALEAEYPQLA---S 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++G        +V H++P LSL   +N E++ +F+ RI    + K      F+ 
Sbjct: 58  ADSPTQRVGHLAASRFAEVRHALPMLSLGNAFNDEEVTEFVRRISERLEVK---QPLFSA 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189
           EPK+DG  I++RYE G+FV  A RGDG +GEDVSA +R +  IP  L     P+++EVRG
Sbjct: 115 EPKLDGLAISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248
           EVY+ +  F + N +M A G K  ANPRN A+G LR+L+      R L+FF +G+G+ SE
Sbjct: 175 EVYMPRAAFESYNAQMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSE 234

Query: 249 IF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               +    +L ++R  GFPV++ V       G+++YY  + + R  L +DIDG+VYK+D
Sbjct: 235 GVLPQTHSAILAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLD 294

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q+++G  +R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G +
Sbjct: 295 DLAGQREMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVI 354

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNATLHN D I  L           D+RVGD V+V+RAG+VIP+V  ++ ++R P  Q 
Sbjct: 355 VTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQA 403

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP+C S +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG
Sbjct: 404 WQMPTQCPVCGSEIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLG 457

Query: 488 KQQL-------------DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK----------- 523
           ++ +             D +  + D    +R+ +   +     + +              
Sbjct: 458 EKFIEVLVDSGLVQGVADIYLLTVDQLLQLRMISTAESPHAFLREAREHLASGAYAQLET 517

Query: 524 -------------------------------IENILGFGDVSVTNLYDSINKRRNISLER 552
                                            N          NL ++I   R+ +LER
Sbjct: 518 TVVGIGVDMAGEREVPPTWQADLLRAGLPKFDWNRKKIATKWAENLIEAIETSRDTTLER 577

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+F+LGI HVG   A++L+ ++   +                W    RVP +G  +A+A+
Sbjct: 578 FLFALGIEHVGESTAKALSAWFGDLELIRHLP----------WPLFKRVPDIGGEVARAL 627

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
             F   P N  A++ LL+        H  +
Sbjct: 628 GHFLDQPGNQQAIDDLLQRGVRIGDTHPPS 657



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 6/149 (4%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLV-GDIIAQAIVEFYQNPRNICAVEAL---LKEVS 633
           Q  A  +++  A       +L +   V   ++A A++++   P N     A    ++ V 
Sbjct: 684 QQLAAAVDSFAALRTAGADALQQ-AGVPAPVVA-ALLQWLDRPENAALASAAQQAMETVL 741

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
             +   +   +  ++ + +V TGTL  + R  A++ +  LGA V+  +S+KT  ++ G+ 
Sbjct: 742 ARLPEADALQTGPLDGQSVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEE 801

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            GSKL+KAQ LGV I +E + L  L ++ 
Sbjct: 802 AGSKLDKAQSLGVDIWDEARLLAFLSEHG 830


>gi|317502015|ref|ZP_07960199.1| DNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896695|gb|EFV18782.1| DNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 644

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 182/706 (25%), Positives = 305/706 (43%), Gaps = 68/706 (9%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L + ++     Y Q +  I+ + EYD L     ++         +   + P   +G 
Sbjct: 1   MRELVELLNKARRAYEQENTEIMSNFEYDRLYDELLSLEKE----LETTLASSPTVNVGY 56

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           E+   L K  H  P LSL+K  ++E LR+F+                  +  K+DG  I 
Sbjct: 57  EVLSELPKERHETPMLSLDKTKDVERLREFL------------GDQQAVISWKMDGLTIV 104

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YE G    A  RG+G  GE V+   +    +P  LS+     + +RGE  IS  DF  
Sbjct: 105 LTYENGVLKKAVTRGNGEIGEVVTNNAKVFRNVP--LSIPFKGELVLRGEAVISYKDFEK 162

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
           +N+E I      Y NPRN  SG +R+LN      R + F+   L K   +  +       
Sbjct: 163 INEE-IGDADAKYKNPRNLCSGSVRQLNNEVTAKRNVRFYAFTLVKADNVDFENSRAYQL 221

Query: 260 KM-RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           K  +  GF V           G                   DGLV   D+ S  + LG  
Sbjct: 222 KWLQEQGFDVVEHHLVTRDTVG--DEVAWFAEHIRENEVPSDGLVLIYDDISYGQSLGTT 279

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           A+ PR   + K+ ++   T + +I+    RTG++ PVA  +PV + G  ++ A++HN   
Sbjct: 280 AKFPRDSFAFKWEDEVRKTTIREIEWSPSRTGLINPVAIFDPVELEGTTVSRASVHNISI 339

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           ++ L+           + +GD V V +A  +IP++ + +             P  CP+C+
Sbjct: 340 MEELE-----------LGIGDTVTVYKANMIIPQIAENLTRSGVS-----EIPKECPVCK 383

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
                 +   T  L           C A+ ++    F SRDA NIEGL +  L+ F  + 
Sbjct: 384 KPTKISMENNTKTL-----YCMNSKCQAKHVKSFSLFASRDAMNIEGLSEATLEKFIIN- 437

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                ++   DIF L R +     +I+ + GFG+ S  NL   I   R  +L R I+SLG
Sbjct: 438 ---GYVKDFTDIFHLDRYEA----EIKTMEGFGEKSYENLRKRIENARKTTLPRLIYSLG 490

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I ++G   A+ + +             +           L  +  VG +IA   VE++++
Sbjct: 491 IPNIGISNAKMICRALG---------EDPKRVIRATEEELSAISGVGGVIAGTFVEYFKD 541

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVV 677
             ++   + LLKEV  +    E+    +      V TG+++    R + +E + + G  V
Sbjct: 542 TAHVDVFDRLLKEVELTKETSEE--DQKFAGVNFVITGSVEHFVNRAQVKEEIEKRGGKV 599

Query: 678 SAILSRKTDIIIVGDNPGS---KLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  ++ KT+ +I  D  GS   K +KA++LG+ I++EE FL ++ +
Sbjct: 600 TGSVTSKTNYLINND-TGSGTAKNKKARELGIPIISEEDFLQMMNE 644


>gi|323695090|ref|ZP_08109232.1| DNA ligase [Clostridium symbiosum WAL-14673]
 gi|323500845|gb|EGB16765.1| DNA ligase [Clostridium symbiosum WAL-14673]
          Length = 663

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 177/717 (24%), Positives = 296/717 (41%), Gaps = 80/717 (11%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IE     +  L   +S     YYQ S+ I+ + EYD L      +               
Sbjct: 8   IENKTARIRELVDTLSAAGRAYYQESREIMSNFEYDRLYDELAELEKE----TGIVFAGS 63

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E+  SL K  H  P LSL K  ++E+L++++                     K
Sbjct: 64  PTQNVGYEVMSSLPKERHEKPMLSLNKTKSVEELQEWLGDQKGLL------------SWK 111

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + YE G    A  RG G  GE ++   +    +P  L++     + +RGE  I
Sbjct: 112 MDGLTIVLTYEGGTLAKAVTRGSGEIGEVITNNAKVFANVP--LNIGFTGQLILRGEAVI 169

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
             +DF  +N   I      Y NPRN  SG +R+LN      R + F+   L     +   
Sbjct: 170 RYSDFEKINA-QIEDVDAKYKNPRNLCSGSVRQLNNEITARRNVRFYAFSLVMADGVDFG 228

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              +   +  C         ++      +     E     S      DGLV   D+    
Sbjct: 229 NSRKKQFEWLCSQGFEVVDYKEVTRDT-LPGKVQEFSDAVSGNDIPSDGLVLLYDDIEYG 287

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  A+ PR  I+ K+ ++   T L  I+    RTG++ PVA  EPV + G  ++ A+
Sbjct: 288 QSLGRTAKFPRDSIAFKWMDEIQETTLSYIEWSASRTGLINPVAVFEPVELEGTTVSRAS 347

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           +HN   ++ L+           + VGD++ V +A  +IP++ + +      D      P 
Sbjct: 348 VHNLSIMEALE-----------LGVGDKITVYKANMIIPQIAENLTKSGVKD-----IPK 391

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C +                        C A++++    F SRDA NI GL +  L+
Sbjct: 392 HCPVCGADT-----EIRQINDVKSLYCTNPDCQAKKIKSFTLFASRDALNIGGLSEATLE 446

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      I   ADIF L R +Q    +I  + GFG  S  NL  S+ K    +L R
Sbjct: 447 KMI----GVGFIHEYADIFHLDRYEQ----EIVTMDGFGQKSYDNLIASVKKASETTLPR 498

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            ++SLGI  +G   A+ L + + +         +  A    +   L+ V  +GD++A A 
Sbjct: 499 VVYSLGISGIGLANAKMLCRRFKN---------DFAAMRKAEKEELVAVDGIGDVLADAW 549

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVT 671
           ++F+ + +N   V+ LL E++      E+      +    V TG+++  + R + QE + 
Sbjct: 550 IDFFSSEKNNEIVDHLLDELTIEETAEEEEAEGVFDGISFVITGSVEHFKNRKEIQEIIE 609

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ-----------QLGVKIMNEEQFLFL 717
           Q G  V+  ++ KT+ +I  D                     +LG+ I++E++F+ +
Sbjct: 610 QKGGKVTGSVTAKTNYLINND---------TASSSSKNKKAKELGIPIISEQEFIEM 657


>gi|323485704|ref|ZP_08091041.1| hypothetical protein HMPREF9474_02792 [Clostridium symbiosum
           WAL-14163]
 gi|323400967|gb|EGA93328.1| hypothetical protein HMPREF9474_02792 [Clostridium symbiosum
           WAL-14163]
          Length = 663

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 177/717 (24%), Positives = 295/717 (41%), Gaps = 80/717 (11%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IE     +  L   +S     YYQ S+ I+ + EYD L      +               
Sbjct: 8   IENKTARIRELVDTLSAAGRAYYQESREIMSNFEYDRLYDELAELEKE----TGIVFAGS 63

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E+  SL K  H  P LSL K  ++E+L++++                     K
Sbjct: 64  PTQNVGYEVMSSLPKERHEKPMLSLNKTKSVEELQEWLGDQKGLL------------SWK 111

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + YE G    A  RG G  GE ++   +    +P  L++     + +RGE  I
Sbjct: 112 MDGLTIVLTYEGGTLAKAVTRGSGEIGEVITNNAKVFANVP--LNIGFTGQLILRGEAVI 169

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
             +DF  +N   I      Y NPRN  SG +R+LN      R + F+   L     +   
Sbjct: 170 RYSDFEKINA-QIEDVDAKYKNPRNLCSGSVRQLNNEITARRNVRFYAFSLVMADGVDFG 228

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              +   +  C         ++      +     E     S      DGLV   D+    
Sbjct: 229 NSRKKQFEWLCSQGFEVVDYKEVTRDT-LPGKVQEFSDAVSGNDIPSDGLVLLYDDIEYG 287

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG  A+ PR  I+ K+ ++   T L  I+    RTG++ PVA  EPV + G  ++ A+
Sbjct: 288 QSLGRTAKFPRDSIAFKWMDEIQETTLSYIEWSASRTGLINPVAVFEPVELEGTTVSRAS 347

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           +HN   ++ L+           + VGD++ V +A  +IP++ + +      D      P 
Sbjct: 348 VHNLSIMEALE-----------LGVGDKITVYKANMIIPQIAENLTKSGVKD-----IPK 391

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP+C +                        C A++++    F SRDA NI GL +  L+
Sbjct: 392 HCPVCGADT-----EIRQINDVKSLYCTNPDCQAKKIKSFTLFASRDALNIGGLSEATLE 446

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      I   ADIF L R +Q    +I  + GFG  S  NL  S+ K    +L R
Sbjct: 447 KMI----GVGFIHEYADIFHLDRYEQ----EIVTMDGFGQKSYDNLIASVKKASETTLPR 498

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            ++SLGI  +G   A+ L + + +         +  A        L+ V  +GD++A A 
Sbjct: 499 VVYSLGISGIGLANAKMLCRRFKN---------DFAAMRKAKKEELVAVDGIGDVLADAW 549

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVT 671
           ++F+ + +N   V+ LL E++      E+      +    V TG+++  + R + QE + 
Sbjct: 550 IDFFSSEKNNEIVDHLLDELTIEETAEEEEAEGVFDGISFVITGSVEHFKNRKEIQEIIE 609

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ-----------QLGVKIMNEEQFLFL 717
           Q G  V+  ++ KT+ +I  D                     +LG+ I++E++F+ +
Sbjct: 610 QKGGKVTGSVTAKTNYLINND---------TASSSSKNKKAKELGIPIISEQEFIEM 657


>gi|47459030|ref|YP_015892.1| NAD(+)-dependent DNA ligase [Mycoplasma mobile 163K]
 gi|81614352|sp|Q6KI95|DNLJ_MYCMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|47458358|gb|AAT27681.1| NAD(+)-dependent DNA ligase [Mycoplasma mobile 163K]
          Length = 671

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 208/717 (29%), Positives = 355/717 (49%), Gaps = 58/717 (8%)

Query: 10  EALSIEQ----ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
             ++  +       E + L+ +I+  +  Y+ Y +P++ DS YDA   +     + +  L
Sbjct: 5   SKMNDNEKNNRIISEYNDLKNKINLWNKAYFDYDEPLVEDSIYDATLLKLIKFENQYKFL 64

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              ++ + P   IG +++    KV H  P LSL K +  +DL+ F   I +     +   
Sbjct: 65  ---DNSDSPTKNIGAKVSKKFSKVQHQFPMLSLNKAYKFDDLKIFERHINKLGFFPN--- 118

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
             + LE KIDG  I+++Y+ G  + A  RGDG SGEDV+  +  I  IP    +   + I
Sbjct: 119 --YFLELKIDGLSISLKYDNGNLIQALTRGDGISGEDVTENVFQIQDIP--KQIKYSKPI 174

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244
           E+RGE+Y+SK+ F  +N+   +     +ANPRNAASG LR+L+ +    R LN F + + 
Sbjct: 175 EIRGEIYLSKSTFYEINECQKSQNLTIFANPRNAASGSLRQLDSSIVKERKLNSFFYSVT 234

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL--PYDIDGL 302
              +   K   +    ++   F V +  +  +T      +  + +         Y+IDG+
Sbjct: 235 NPLDHKIKNFNDQELFLKENNFQVPSLNKFVDTIEKAYEFIKDFEKNNYREKLNYEIDGI 294

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVD+FSL   LG+ ++ PR MI+ KF++    T+L+DI I +GRTG +T  A LEPV 
Sbjct: 295 VVKVDDFSLYDILGQTSKFPRSMIAFKFSDISIETKLIDIFISVGRTGKITYNAILEPVI 354

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           I G L++ ATLHN +Y++ L            +   D V + +AGE+IPKVV +    + 
Sbjct: 355 INGTLVSAATLHNYEYVESL-----------KLNKNDNVKIIKAGEIIPKVVSL---SKK 400

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
                F    +C  C  ++V+  +          +      C   +L +++HF S+ A N
Sbjct: 401 NSETIFKRIEYCTSCNEKLVQPEDE-------VDQYCINKKCLMIRLRKIEHFASKKAMN 453

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I GLG Q ++ FFK       +   +D+F L++ +      IE+   FG+ S  NL +SI
Sbjct: 454 ILGLGFQNIEKFFK----LGILTKYSDLFFLEKYKN----LIESQPSFGEKSFNNLIESI 505

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           N+ ++ SLE+FIF++GI+ +G   A+ +A       N            N D+  L  + 
Sbjct: 506 NRSKSNSLEKFIFAIGIKQIGERSAKLIANEVKLLSNLI----------NFDFEKLNNIR 555

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +      ++  F+ +   I  ++ +L+          +  S +++    V TGTL K  
Sbjct: 556 DISCKTINSLKCFFSDENEIEEIKIILELGLDFKNLENEFESKKLQGLNFVITGTLSK-P 614

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLL 718
           R   +E + + G  V   +S + + ++ G+  GSK+EKAQ++  +KI++E +F  L+
Sbjct: 615 RDFFKELIIKNGGNVLNSISNRINYLLTGEKSGSKIEKAQKINTIKILDENEFNKLI 671


>gi|16125769|ref|NP_420333.1| DNA ligase, NAD-dependent [Caulobacter crescentus CB15]
 gi|221234527|ref|YP_002516963.1| NAD-dependent DNA ligase [Caulobacter crescentus NA1000]
 gi|81535469|sp|Q9A842|DNLJ_CAUCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781280|sp|B8H5Y7|DNLJ_CAUCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|13422903|gb|AAK23501.1| DNA ligase, NAD-dependent [Caulobacter crescentus CB15]
 gi|220963699|gb|ACL95055.1| NAD-dependent DNA ligase [Caulobacter crescentus NA1000]
          Length = 783

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 239/613 (38%), Positives = 339/613 (55%), Gaps = 24/613 (3%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           IP+  L+  QA ++L  L   ++ HD  Y+Q   P + D+EYDALKRR   I   FP L 
Sbjct: 4   IPVADLTEAQAVEDLERLADLLATHDIAYHQEDNPTVSDAEYDALKRRNLDIETRFPHLV 63

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R    N P  ++G         V H +P LSL+  ++ ++  +F  R+ RF +     ++
Sbjct: 64  RD---NSPSMRVGATRAEQFAPVEHGVPMLSLDNAFSNDEAIEFDARVRRFLRISPSETV 120

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEII 185
            +T EPKIDG   ++RYEKG  V  A RGDG  GEDV+A +R I  IP  L  +  P++I
Sbjct: 121 AYTAEPKIDGLSASLRYEKGVLVQGATRGDGRVGEDVTANLRTIADIPHRLKGSGWPDVI 180

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244
           EVRGEVY+    F A N      G++ YANPRN A+G LR+++P     R L FF +  G
Sbjct: 181 EVRGEVYVELAAFAAFNKAAEEAGQRTYANPRNFAAGSLRQIDPKISAQRPLRFFGYAWG 240

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
             SE FA  Q+  L+++   GF       ++     G++  Y + + +R TL +DIDG+V
Sbjct: 241 LVSEGFADSQWGALERLAEWGFVTTAPPAQRVLNAQGLLDIYAQFEVLRPTLGFDIDGVV 300

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKVD+  LQ++LG  +RSPRW I+ KF  ++A T L  ID+Q+GRTG +TPVARL+PV +
Sbjct: 301 YKVDDLELQRRLGFVSRSPRWAIARKFPAQRARTVLEAIDLQVGRTGAITPVARLKPVTV 360

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII-VNERH 422
           GG  +TNATLHN D I  L           D+RVGD V+++RAG+VIP++V++       
Sbjct: 361 GGVSVTNATLHNGDEIARL-----------DVRVGDTVVIQRAGDVIPQIVEVALDARPD 409

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
           P   P+ FP  CP      +      +G+     RCTG  AC  Q++E L+HFVSR AF+
Sbjct: 410 PAPPPYEFPHVCPCPLQTPLAREVTASGQESVVRRCTGEFACPFQRVEHLRHFVSRRAFD 469

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGLG++QL  FF+       I  PADIF L  R       +    G+G+ SV NL   I
Sbjct: 470 IEGLGEKQLQAFFEE----GWITEPADIFKL-ARDAEKLAVLREREGYGETSVANLVKGI 524

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA-QEINNIIAHNNDDWLSLIRV 601
             RR I ++R I+ LG R +G   +  LA+ +  +++          A   + +L L   
Sbjct: 525 EARRTIGMDRMIYGLGARDIGETTSTVLARNFDRFEDLQAAAEAAARALPGETYLELSTA 584

Query: 602 PLVGDIIAQAIVE 614
           P VG      +VE
Sbjct: 585 PGVGPKALDMLVE 597



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 86/165 (52%), Gaps = 2/165 (1%)

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
              +  +      +LA+ Y ++  FA   +        DD+L L  +  VG + AQ++  
Sbjct: 619 GHAVPKLTKPARAALAQRYGTWDAFADGLVAAASGAPGDDYLHLAAIDGVGPVAAQSLAR 678

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+    N   V  L+ E+        K   + +  K +VFTG+L+K+ R +A+     LG
Sbjct: 679 FFAEDHNRQKVANLVAELDIQPVAKPK-TDTAVAGKTIVFTGSLEKMTRDEAKAQAEGLG 737

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A V++ +S+KTD+++ G   GSKL+ A  LG+++M E+++L L+ 
Sbjct: 738 AKVASSVSKKTDLVVAGPGAGSKLKTATDLGIQVMTEDEWLELVA 782


>gi|15594897|ref|NP_212686.1| NAD-dependent DNA ligase LigA [Borrelia burgdorferi B31]
 gi|7673988|sp|O51502|DNLJ_BORBU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|2688477|gb|AAC66923.1| DNA ligase (lig) [Borrelia burgdorferi B31]
          Length = 660

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 203/712 (28%), Positives = 347/712 (48%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       
Sbjct: 1   MS-SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++E
Sbjct: 57  DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEV
Sbjct: 111 PKIDGCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           YI+K +FL +N  +     KPY N RN ASGILRR++  ++  +           + +  
Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           K       +++ LGF VN  +R  +  +    +++Y  ++   R +  Y+IDG+V KV +
Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSD 284

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+L+++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA I
Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           T+ATLHN+DYI+ +            + VGD V V R G+VIP V  +I          F
Sbjct: 345 TSATLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   
Sbjct: 391 KVPDNCPACKTAVVKEG---------AHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSD 441

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + + F F+ +     I    D++T          K+    GF D  + NL +SI   +  
Sbjct: 442 KIISFLFEKK----FIFSEIDLYT------FDFYKLLEFKGFKDRKINNLINSIEASKKK 491

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              + + S+GI+ +G    R L   +L+  N   ++  +       + +L+++  +G+ I
Sbjct: 492 PFSKLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKI 548

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667
           A  I+E + +   +   +               +  +++   KK   TGT     R    
Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIII 608

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|224826983|ref|ZP_03700081.1| DNA ligase, NAD-dependent [Lutiella nitroferrum 2002]
 gi|224600816|gb|EEG07001.1| DNA ligase, NAD-dependent [Lutiella nitroferrum 2002]
          Length = 815

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 216/664 (32%), Positives = 340/664 (51%), Gaps = 78/664 (11%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           EQA + ++ L   ++ +   YY+  +P + D EYD L R  +A+  A P+L R+   + P
Sbjct: 12  EQAVQRIAELVPLLNRYSREYYERDEPTVPDVEYDRLYRELEALEAAHPELRRA---DSP 68

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNI----------EDLRKFITRIYRFWQKKDDN 124
             ++GG        VTH++P LSL   ++            +L +F  R+ +        
Sbjct: 69  TLRVGGAPLAEFSSVTHAVPMLSLNNAFSDLDAADFEQRHAELIQFDERVRKALG---GA 125

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPE 183
            + + ++PK DG  +++ Y  G  V  A RGDG SGE+V+  +R +  IP R+   + P 
Sbjct: 126 EVEYAVQPKFDGLAVSLLYRDGVLVQGATRGDGFSGENVTENLRTVRAIPLRLTIEHPPA 185

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHG 242
           ++EVRGEV + K DF  LN E  A G K +ANPRNAA+G LR+L+      R L+FF + 
Sbjct: 186 LLEVRGEVLMLKRDFEQLNAEQAARGDKTFANPRNAAAGSLRQLDSRITARRRLSFFAYA 245

Query: 243 LGKTSE-IFAKGQYEMLQKMRCLGFP--VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           + +     +       L  +  LG P              G+ +YY  +   R++LPYDI
Sbjct: 246 IAQVEGADWPVSHQAELDWLHRLGIPLVPAELRPVVRGVAGLAAYYEAILRQRASLPYDI 305

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYKV++ + Q+ LG  +R+PRW I+HKF  ++A T +  I+ Q+GRTG +TPVARL+
Sbjct: 306 DGVVYKVNDRAQQEALGFVSRAPRWAIAHKFPAEEALTLVEAIEEQVGRTGAITPVARLK 365

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV +GG  +TNATLHNED ++            +D+RVGD V+V+RAG+VIP+VV +++ 
Sbjct: 366 PVFVGGVTVTNATLHNEDEVRR-----------KDVRVGDTVIVRRAGDVIPEVVAVVLE 414

Query: 420 ERH---------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLAC 464
            R                P    +  P+ CP+C S VVR+         A  RC+GGL C
Sbjct: 415 RRPMRPVAGGDLFSSGDEPQHPAYRLPTACPVCGSHVVREEGE------AIARCSGGLIC 468

Query: 465 SAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ-----RRQQT 519
            AQ+ + ++HF  R   +I+GLG++ +D   +       +   AD++TLQ       +  
Sbjct: 469 RAQRSQAIQHFAGRRMMDIDGLGERYIDNLVE----FGYVNSVADLYTLQLADLLEMKHR 524

Query: 520 STTKIENIL------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573
           +  +   +               NL  +I   R  +L R +F+LGIRHVG   A++LA +
Sbjct: 525 ADERDGVVPETVQKGQIATKWAENLLAAIAASRRPTLARLLFALGIRHVGESTAKTLADW 584

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
               +   +    ++A              +G ++A+AI +F+    N   +EALL+ V 
Sbjct: 585 LGRLELIRRAPAPLLAALP----------DIGGVVAEAIADFFAEDNNETVLEALLRHVQ 634

Query: 634 PSIG 637
           P   
Sbjct: 635 PGDE 638



 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 4/148 (2%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
           Q  A +I  + A    +   L+++ L  D+   A+ ++   P     +  L   V   + 
Sbjct: 669 QQLAGQIAGLAALAASERRELMQLDLPADVF-NALADWLDEPGRRAELSQLASLVDSILA 727

Query: 638 RHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
                 SS    +E K LV TGTL  + R +A+E +   G  V+  +S+KT  ++ G+  
Sbjct: 728 DLPTQPSSANLLLEGKTLVLTGTLPTLSRDQAKELIEAAGGKVAGSVSKKTHYVVAGEAA 787

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           GSKL KA++LGV +++E   L LL Q  
Sbjct: 788 GSKLAKAEELGVPVLDEAGLLALLDQAE 815


>gi|300691610|ref|YP_003752605.1| DNA ligase [Ralstonia solanacearum PSI07]
 gi|299078670|emb|CBJ51328.1| DNA ligase [Ralstonia solanacearum PSI07]
          Length = 813

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 221/647 (34%), Positives = 334/647 (51%), Gaps = 69/647 (10%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           + +   YY   +P + D+EYD L R  +A+    P+L     P+ P  ++GG +      
Sbjct: 25  NRYAHEYYVLDQPSVPDAEYDRLYRELEALEADHPELK---TPDSPTLRVGGAVLPEFAP 81

Query: 89  VTHSIPTLSLEKIWNI--EDLRKFITRIYRFWQKKD-DNSIFFTLEPKIDGTMITIRYEK 145
           V H +P LS+    +   +    F   + R     + D S+ +  E K DG  I +RYEK
Sbjct: 82  VRHVVPMLSIRTETDTTADGALAFDASVRRELGLAESDPSVEYAAELKFDGLAINLRYEK 141

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLALN 202
           G  V AA RGDG +GEDV+  IR I  IP   R ++  +P+++EVRGEVY+ ++DF  LN
Sbjct: 142 GFLVQAATRGDGTTGEDVTQNIRTIRQIPLGLRPVNGAVPDVLEVRGEVYMRRDDFERLN 201

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGK--TSEIFAKGQYEMLQ 259
                 G K + NPRN A+G +R+L+P        +FF +GLG+             +L 
Sbjct: 202 ARQRERGEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWAEMPGTHAGVLD 261

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +   GFPV++         G+V ++ ++++ R +LP+DIDG+VYKV+  +LQ++LG R 
Sbjct: 262 ALVAFGFPVSHERAAVTGGEGLVRFHADIRAKRDSLPFDIDGVVYKVNSLALQRELGFRT 321

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           R PRW ++HK+  ++A T +  I +Q+GRTG +TPVARL PV +GG  +TNATLHNED +
Sbjct: 322 REPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLVPVFVGGVTVTNATLHNEDEV 381

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER---------------HPD 424
           +            +D+RVGD V+V+RAG+VIP+VV +++  R                P 
Sbjct: 382 RR-----------KDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNPAQQPK 430

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
             PF  P  CP+C S VVR+         A  RC+GGL CSAQ+ E ++HF  R   +IE
Sbjct: 431 YPPFELPKSCPVCGSHVVREEGE------AVARCSGGLFCSAQRKEAIRHFAGRRMMDIE 484

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL-----------GFGDV 533
           GLG++ +D   + E     +   AD++ L         +  +                  
Sbjct: 485 GLGERYIDNLVELE----YVHGIADLYRLTLDDFLEMKRRADERDGVTPETVAAGKIATK 540

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
              NL   I   +   L RF+F+LGIRHVG   A++LA +  S     +    +      
Sbjct: 541 WAENLLAGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAVIRRAPAPL------ 594

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
               L+ +P VG  +A+AI +F+  P+N  A++ALL       G H 
Sbjct: 595 ----LLTLPDVGATVAEAIADFFAEPKNQQALDALLAAGVTPQGEHP 637



 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 17/167 (10%)

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LG+  + A  ++ LA    +    A      +     D             ++ +++++
Sbjct: 654 ALGVPKLTATRSKQLATLVPALAQLATADAAQLEGLPAD-------------VSASLLDW 700

Query: 616 YQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            +   +      +EAL  E+  ++          +  K +V TGTL  + R  A+  +  
Sbjct: 701 LEADDHRARLAQLEALRAELLAAMPA-GTAEEGALSGKTVVLTGTLPNLTRDAAKAMLEA 759

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            GA VS  +S+KTD ++ G   GSKL +AQ+LGV++++E   L LLQ
Sbjct: 760 AGAKVSGSVSKKTDYLVAGVEAGSKLARAQELGVRVLDEAGMLALLQ 806


>gi|195941686|ref|ZP_03087068.1| DNA ligase (lig) [Borrelia burgdorferi 80a]
 gi|225549484|ref|ZP_03770450.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 118a]
 gi|225369761|gb|EEG99208.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 118a]
          Length = 660

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 203/712 (28%), Positives = 347/712 (48%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       
Sbjct: 1   MS-SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++E
Sbjct: 57  DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEV
Sbjct: 111 PKIDGCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           YI+K +FL +N  +     KPY N RN ASGILRR++  ++  +           + +  
Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           K       +++ LGF VN  +R  +  +    +++Y  ++   R +  Y+IDG+V KV +
Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSD 284

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+L+++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA I
Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           T+ATLHN+DYI+ +            + VGD V V R G+VIP V  +I          F
Sbjct: 345 TSATLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   
Sbjct: 391 KVPDNCPACKTAVVKEG---------AHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSD 441

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + + F F+ +     I    D++T          K+    GF D  + NL +SI   +  
Sbjct: 442 KIISFLFEKK----FIFSEIDLYT------FDFYKLLEFKGFKDRKINNLINSIEASKKK 491

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              + + S+GI+ +G    R L   +L+  N   ++  +       + +L+++  +G+ I
Sbjct: 492 PFSKLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKI 548

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667
           A  I+E + +   +   +               +  +++   KK   TGT     R    
Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVI 608

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|145356969|ref|XP_001422695.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582938|gb|ABP01012.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 755

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 242/772 (31%), Positives = 371/772 (48%), Gaps = 93/772 (12%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN--LSLFK 88
           HD  YY  ++P+I DSEYD ++ R DAIA A      +    G   ++G   +    L K
Sbjct: 2   HDGKYYNDAEPVISDSEYDGMRARYDAIAAA---HPTAAKAGGARARVGATPDGASGLEK 58

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-----IFFTLEPKIDGTMITIRY 143
           + H++P  SL   +++  +  F+ R+ +   + +  +     I +  EPK+DG   ++RY
Sbjct: 59  IAHAVPMRSLGNAFDVGQVEAFMKRVEKLRGETEGEAATTTAIEYCAEPKVDGASASLRY 118

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
           E G+ VYA  RGDG  GEDV+  +     +P  L+   P ++E+RGEV+++  DF  +N 
Sbjct: 119 ENGELVYAVSRGDGEMGEDVTRHLIGARGVPMKLAEPYPAVLEIRGEVHVADEDFQRVNA 178

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMR- 262
           E  A G + + N RNAA+G +R L   D    L F  +G G       +       +   
Sbjct: 179 ERAATGLRVFKNARNAAAGAMRTLVVDDNQMPLRFLAYGWGAVGASNEETNAPWRTQSEF 238

Query: 263 ------CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
                   GF     +  A T   ++  Y+ ++  R T+PY+IDG+VYKV+   LQ  LG
Sbjct: 239 LSAFLPAQGFDAVPFLGVAKTIGELIEAYDALEIARPTMPYEIDGVVYKVNSVELQTALG 298

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             AR PRW I+HKF    A T L  I+IQ+GRTG LTPVA L+PV+IGGA I+ ATLHN 
Sbjct: 299 ADARQPRWAIAHKFTAMSAVTTLRAIEIQVGRTGALTPVALLDPVDIGGASISRATLHNF 358

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA---------QP 427
           D I             + ++VG +V V+RAG+VIP+VV +  ++    +           
Sbjct: 359 DEIAR-----------KHLKVGAQVTVERAGDVIPRVVSLAGDDLAEASAYAEDIKPLPE 407

Query: 428 FSFPSFCPICQSRVVRDLNPKTGK-LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           +  PS CP C S VVR     +   + +  RCTGGL C +Q +ERL HF +RDA +I GL
Sbjct: 408 WLPPSKCPDCGSSVVRAPLSASKTAMGSIVRCTGGLKCPSQSMERLLHFCARDALDIRGL 467

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRR------------------QQTSTTKIENIL 528
            +  L+   +       ++ PADIFTL+RR                  + +         
Sbjct: 468 ARGTLETLHRE----GVVKTPADIFTLERRFGPDSGDAVPTWWRYAGVKNSKGEIKHGSD 523

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
           G    +V        +R+ + L RFI++LGI ++GA  A+ LA +Y S   F +      
Sbjct: 524 GLKQSAVKLFQAIEVRRQGVPLHRFIYALGIPNIGAHTAKVLATHYGSLAAFKKAALAAA 583

Query: 589 AHNNDDWL--SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNV 643
                     +L  V  VG ++AQ++V+F+  P N   V+ ++        +     KN 
Sbjct: 584 KGGPASLAHAALTHVDGVGPVLAQSLVDFWGEPGNAFIVDEIIATGVVVLDADASSSKNQ 643

Query: 644 SSE---------------------------IENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            S                            +   K++FTGT+    R    + +   G  
Sbjct: 644 PSPRFAEPASSSSVSPTPSPTVPSPEPTADLRGMKILFTGTIDGFSRDDVHDLIRAAGGD 703

Query: 677 VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727
           V++ LSRKT +++ G   G SKL KA+ L V I++  +F+  L   + +L +
Sbjct: 704 VASTLSRKTALVVAGVGAGPSKLAKARDLAVPIVDASRFVSALTSGDGSLPL 755


>gi|216264759|ref|ZP_03436751.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 156a]
 gi|223888694|ref|ZP_03623285.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 64b]
 gi|225548725|ref|ZP_03769772.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 94a]
 gi|215981232|gb|EEC22039.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 156a]
 gi|223885510|gb|EEF56609.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 64b]
 gi|225370755|gb|EEH00191.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 94a]
          Length = 660

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 201/712 (28%), Positives = 343/712 (48%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       
Sbjct: 1   MS-SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++E
Sbjct: 57  DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEV
Sbjct: 111 PKIDGCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           YI+K +FL +N  +     KPY N RN ASGILRR++  ++  +           + +  
Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           K       +++ LGF VN  +R  +  +    +++Y  ++   R +  Y+IDG+V KV +
Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSD 284

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+L+++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA I
Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           T+ATLHN+DYI+ +            + VGD V V R G+VIP V  +I          F
Sbjct: 345 TSATLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   
Sbjct: 391 KVPDNCPACKTAVVKEG---------AHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSD 441

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + + F F+        +       L         K+    GF D  + NL +SI   +  
Sbjct: 442 KIISFLFEK-------KFIFSEIDLYAFD---FYKLLEFKGFKDRKINNLINSIEASKKK 491

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              + + S+GI+ +G    R L   +L+  N   ++  +       + +L+++  +G+ I
Sbjct: 492 PFSKLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKI 548

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667
           A  I+E + +   +   +               +  +++   KK   TGT     R    
Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVI 608

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|325278944|ref|YP_004251486.1| DNA ligase [Odoribacter splanchnicus DSM 20712]
 gi|324310753|gb|ADY31306.1| DNA ligase [Odoribacter splanchnicus DSM 20712]
          Length = 829

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 183/623 (29%), Positives = 303/623 (48%), Gaps = 51/623 (8%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +  +  L + + YH+  YY  + P I D E+D L    + +   +P+     DPN 
Sbjct: 1   MQTEKDRILELRKALEYHNYKYYIENAPEISDREFDGLMHDLEKLEEKYPE---MYDPNS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G ++N    +V H  P LSL   ++ E+LR F  R+ +       + + +  E K
Sbjct: 58  PTQRVGRDINQEFTQVAHKYPMLSLGNTYSEEELRDFDQRVRKVVG----DRVQYVCELK 113

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DGT I++ Y  G+   A  RGDG  G+DV+A +R I T+P  L  + P   E+RGE+ +
Sbjct: 114 YDGTSISLTYVNGELTQAVTRGDGVKGDDVTANVRTIRTVPLKLRGDYPPEFEIRGEILM 173

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
             + F  LN E    G   +ANPRNAA+G L+  N + + +                A+ 
Sbjct: 174 PFSVFNRLNQEKAEAGEPLFANPRNAAAGTLKLQNSSLVAKRHLDCFLYYIPGEVTPAET 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            Y  L K +  GF +   +  A++F  + ++  +    R+ LP  IDG+V KV++  +Q 
Sbjct: 234 HYGNLMKAKEWGFHMPPYIHLADSFEEVWAFITKWDKERTGLPVPIDGIVIKVNDIGMQH 293

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            LG  A+SPRW I++KF  +Q  T L+D+  Q+GRTG +TPVA LEPV+I G  +  A+L
Sbjct: 294 LLGYTAKSPRWAIAYKFKAEQVETPLIDVVYQVGRTGAVTPVANLEPVHIAGTTVKRASL 353

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN D I  L           D+   D V V++ GE+IPK+V +   +R   A    F + 
Sbjct: 354 HNADIISSL-----------DLHEHDTVYVEKGGEIIPKIVGVDRAKRREGAAAVEFITC 402

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C ++++R          A H C     C  Q   +++HFVSR A NIEG+G++ ++ 
Sbjct: 403 CPECGTKLIRIEGE------ANHYCPNEDHCPPQIAGKIEHFVSRKAMNIEGMGEETIEL 456

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
                     IR  ADI+ L  ++       E ++G   +     ++       ++   +
Sbjct: 457 LLGKR----LIRDVADIYGLPAKR-------EELIGLEKIVYPESFEMT--SIPLAKVIY 503

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG-DIIAQAI 612
            F +GI+++ +  A +LA ++ S + +A                L  V  +G +     I
Sbjct: 504 GFEIGIKNISSRNAETLAGHFGSLEAYAAASK----------QELSAV--IGDETTVNRI 551

Query: 613 VEFYQNPRNICAVEALLKEVSPS 635
           +++++ P N   VE L +  +  
Sbjct: 552 LDYFRTPFNQ-TVERLKEAGAVE 573



 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 94/193 (48%), Gaps = 11/193 (5%)

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
           +    + SV NL   I K +       + +LGIR++G   +R+LAK +       +    
Sbjct: 648 VYRMQEKSVDNLIAGIEKSKTAGFPALLNALGIRYIGETASRNLAKSFRELTRLMEA--- 704

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
                  D+  L  V  +G+ +A +I+ ++    N   V+ L+     +     +  +  
Sbjct: 705 -------DFEQLTEVEDIGEQMANSILRYFGKEENRQLVKRLIDYGVEAEIGETETGNDS 757

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  +  V TGTL +  R   +E +   G  VS  +S KT  ++ G+N GSKL+KA++LG 
Sbjct: 758 LTGQTFVITGTLTR-PREYFKELILNAGGKVSDSVSAKTAYLLAGENAGSKLKKAEKLGT 816

Query: 707 KIMNEEQFLFLLQ 719
           +I++EE+F  LL+
Sbjct: 817 RIISEEEFYELLK 829


>gi|221218112|ref|ZP_03589578.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 72a]
 gi|221192060|gb|EEE18281.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 72a]
          Length = 660

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 202/712 (28%), Positives = 346/712 (48%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       
Sbjct: 1   MS-SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++E
Sbjct: 57  DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEV
Sbjct: 111 PKIDGCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           YI+K +FL +N  +     KPY N RN ASGILRR++  ++  +           + +  
Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           K       +++ LGF VN  +R  +  +    +++Y  ++   R +  Y+IDG+V KV +
Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSD 284

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+L+++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA I
Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           T+ATLHN+DYI+ +            + VGD V V R G+VIP V  +I          F
Sbjct: 345 TSATLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   
Sbjct: 391 KVPDNCPACKTAVVKEG---------AHFFCQNNNCPSVAVERIKYFCSKNCMDIEGFSD 441

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + + F F+ +     I    D++T          K+    GF D  + NL +SI   +  
Sbjct: 442 KIISFLFEKK----FIFSEIDLYT------FDFYKLLEFKGFKDRKINNLINSIEASKKK 491

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              + + S+GI+ +G      L   +L+  N   ++  +       + +L+++  +G+ I
Sbjct: 492 PFSKLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKI 548

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667
           A  I+E + +   +   +               +  +++   KK   TGT     R    
Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIII 608

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|216263494|ref|ZP_03435489.1| DNA ligase, NAD-dependent [Borrelia afzelii ACA-1]
 gi|215980338|gb|EEC21159.1| DNA ligase, NAD-dependent [Borrelia afzelii ACA-1]
          Length = 660

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 204/712 (28%), Positives = 352/712 (49%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + ++E++ L++ I   +  YY  S P + D  YD    R   +   +P+       
Sbjct: 1   MS-SKIQQEIADLKKLIRKWNKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K G ++     +V HS+P LSL+K++N++ L+ +I +I         NS   ++E
Sbjct: 57  DSPTLKFGSDLLNDFKEVEHSVPVLSLDKVYNLDLLKLWIDKI------DFSNSFNISVE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y+ G    A  RG+G  G DV+  IR I  +P  L   +   + +RGEV
Sbjct: 111 PKIDGCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHVPLFLGEKV--DLVLRGEV 168

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           YI+K +FL +N  +     KPY N RN ASGILRR++  ++  +           + +  
Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLDF 224

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANT---FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           K     ++K++ LGF VN  +R  +       +++Y  ++   R++  Y+IDG+V KV +
Sbjct: 225 KTNNLAIEKLKKLGFKVNPLIRFFDQKSSIKEVLNYIADITKKRNSFEYEIDGVVLKVSD 284

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+L+++LG     P+W +++KF      +++  I +Q+GR+G +TPVA ++ V + GA I
Sbjct: 285 FALREKLGYTLHHPKWAMAYKFEALSGFSKVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNATLHN+DYI  +           ++ VGD V V R G+VIP V  +I          F
Sbjct: 345 TNATLHNQDYIASI-----------NLNVGDIVKVSRRGDVIPAVEMVINKFSTG---FF 390

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   
Sbjct: 391 KIPDKCPSCKTVVVKEG---------AHFFCTNNNCPSVAVERIKYFCSKNCMDIEGFSD 441

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + + F F+ +     I    D++T       +  K+    GF D  + NL +SI   +  
Sbjct: 442 KTISFLFEKK----FISSEIDLYT------FNFYKLLKFKGFKDRKINNLINSIEASKKK 491

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              + + S+GI+ +G    R L   +L+  N   ++  +    +  +L+L+++  +G+ I
Sbjct: 492 PFSKLLLSIGIKELGENTIRLL---FLNNLNSFSKLFRLCQDRDFAFLTLLKIKGIGEKI 548

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667
           A  I++ + N   I   +           R   +  +++   KK   TG+     R    
Sbjct: 549 ALNIIDAFNNSIMINKFKVFENLGFKMEERILIDDENKLLVGKKFCITGSFNGYSRPIVI 608

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +   GA+    +++  D ++VG+  G+KL+KA  L VKIM+ E     L 
Sbjct: 609 DKLENKGAIFKTCVTKGLDFLVVGEKAGTKLKKALNLNVKIMSFEDIKSYLD 660


>gi|225552370|ref|ZP_03773310.1| DNA ligase, NAD-dependent [Borrelia sp. SV1]
 gi|225371368|gb|EEH00798.1| DNA ligase, NAD-dependent [Borrelia sp. SV1]
          Length = 660

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 204/712 (28%), Positives = 348/712 (48%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + ++E++ L++ I   D  YY  S P + D  YD    R   + + +P+       
Sbjct: 1   MS-SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELENKYPEYKTL--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++E
Sbjct: 57  DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEV
Sbjct: 111 PKIDGCSIVLYYKDGILEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           YI+K +FL +N  +     KPY N RN ASGILRR++  ++  +           + +  
Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRIDSREVANFPLNIFIYDFLNAGLEF 224

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           K       +++ LGF VN  +R  +  +    +++Y  ++   R +  Y+IDG+V KV +
Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDQKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSD 284

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+L+++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA I
Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           T+ATLHN+DYI  +            + VGD V V R G+VIP V  +I          F
Sbjct: 345 TSATLHNQDYIASI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C+  VV++          AH       C +  +ER+K+F S++  +IEG   
Sbjct: 391 KVPDNCPACKMAVVKEG---------AHFFCPNNKCPSVAVERIKYFCSKNCMDIEGFSD 441

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + + F F+ +     I    D++T          K+    GF D  + NL +SI   +  
Sbjct: 442 KIISFLFEKK----FIFSEIDLYT------FDFYKLLEFKGFKDRKINNLINSIEASKQK 491

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              + + S+GI+ +G    R L   +L+  N   ++  +    +  + +L+++  +G+ I
Sbjct: 492 PFSKLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRDFAFSTLLKIKGIGEKI 548

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQ 667
           A  I+E + +   +   +             E +  ++ +  KK   TGT     R    
Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVEIDGENKFLAGKKFCITGTFNGYSRSIVI 608

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|291549033|emb|CBL25295.1| DNA ligase, NAD-dependent [Ruminococcus torques L2-14]
          Length = 652

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 169/712 (23%), Positives = 306/712 (42%), Gaps = 65/712 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  ++    +  L + ++     Y Q +  I+ + EYD L      +         +   
Sbjct: 1   MDEQKEMNHMRELVELLNRARRSYEQENTEIMSNYEYDKLYDELLELEEK----LGTRMA 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P   +G E+   L K  H  P LSL+K  ++E L++F+                  + 
Sbjct: 57  NSPTVNVGYEVLSELPKERHERPMLSLDKTKDVERLKEFL------------GGQKALIS 104

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  + + Y+ G+ V A  RG+G  GE ++   +    +P  L +     + +RGE 
Sbjct: 105 WKLDGLTVVLTYQNGEIVKAVTRGNGVIGEVITNNAKVFKNVP--LKIPYQGELVLRGEA 162

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
            IS  DF  +N+E+  V    Y NPRN  SG +R+LN      R + F+   L +   + 
Sbjct: 163 VISYKDFEKINEEIEDV-DAKYKNPRNLCSGSVRQLNNEITAKRNVRFYAFTLVRAEGVD 221

Query: 251 AKGQYEMLQKM-RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
            +   +   +     GF V                +   +   +      DGLV   D+ 
Sbjct: 222 FQNSRKYQMQWLENQGFDVVENHEVTRDTIEEEVAWFAREIEHN--EVPSDGLVLVYDDI 279

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +  + LG  A+ PR   + K+A++  +T+LL+I+    RTG++ PVA  EPV + G  ++
Sbjct: 280 AYGQSLGTTAKFPRDSFAFKWADEIRNTKLLEIEWSPSRTGLINPVAVFEPVELEGTTVS 339

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A++HN   ++ L+           + VGD + V +A  +IP++ + +      D     
Sbjct: 340 RASVHNISIMEELE-----------LGVGDEIQVYKANMIIPQIAENLTRSGVKD----- 383

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C       +  +T  L   +             +    FVSRDA NIEGL + 
Sbjct: 384 IPKVCPVCGGETKISMENETKTLYCTNPKCQAKHV-----KSFALFVSRDAMNIEGLSEA 438

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+ F         ++   D+F L   +     +I  + GFG+ S   L  SI K R  +
Sbjct: 439 TLEKFIFH----GYVKDFTDLFHLDNYRD----EIMTMDGFGEKSFLKLQSSIEKARKTT 490

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R ++ LGI  +G+  A+ + +   +         +       +   L+ +  VG ++A
Sbjct: 491 LARLVYGLGIPGIGSANAKVICRALGN---------DSQRVLQAEEAELVEIQGVGAVMA 541

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQE 668
           ++ V++++   +    +  L +            S +      V TG+++    R + + 
Sbjct: 542 KSYVDYFKEEEHQEIYKR-LLDEVELEEEEVTEDSQKFAGVNFVITGSVEHFANRAEVKA 600

Query: 669 YVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
            + + G  V+  ++ KT+ +I  D  +  SK +KA+ LGV I++E+ FL +L
Sbjct: 601 EIEKRGGKVTGSVTSKTNYLINNDVNSTSSKNKKARDLGVPIISEKDFLEML 652


>gi|226320519|ref|ZP_03796084.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 29805]
 gi|226234083|gb|EEH32799.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 29805]
          Length = 660

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 203/712 (28%), Positives = 347/712 (48%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       
Sbjct: 1   MS-SRVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++E
Sbjct: 57  DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEV
Sbjct: 111 PKIDGCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           YI+K +FL +N  +     KPY N RN ASGILRR++  ++  +           + +  
Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           K       +++ LGF VN  +R  +  +    +++Y  ++   R +  Y+IDG+V KV +
Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSD 284

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+L+++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA I
Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSDFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           T+ATLHN+DYI+ +            + VGD V V R G+VIP V  +I          F
Sbjct: 345 TSATLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   
Sbjct: 391 KVPDNCPACKTAVVKEG---------AHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSD 441

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + + F F+ +     I    D++T          K+    GF D  + NL +SI   +  
Sbjct: 442 KIISFLFEKK----FIFSEIDLYT------FDFYKLLEFKGFKDRKINNLINSIEASKKK 491

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              + + S+GI+ +G    R L   +L+  N   ++  +       + +L+++  +G+ I
Sbjct: 492 PFSKLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKI 548

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667
           A  I+E + +   +   +               +  +++   KK   TGT     R    
Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVI 608

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|312149444|gb|ADQ29515.1| DNA ligase, NAD-dependent [Borrelia burgdorferi N40]
          Length = 660

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 203/712 (28%), Positives = 346/712 (48%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       
Sbjct: 1   MS-SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++E
Sbjct: 57  DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEV
Sbjct: 111 PKIDGCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           YI+K +FL +N  +     KPY N RN ASGILRR++  ++  +           + +  
Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           K       +++ LGF VN  +R  +  +    +++Y  ++   R +  Y+IDG+V KV +
Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSD 284

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+L+++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA I
Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           T+ATLHN+DYI+ +            + VGD V V R G+VIP V  +I          F
Sbjct: 345 TSATLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   
Sbjct: 391 KVPDNCPACKTAVVKEG---------AHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSD 441

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + + F F+ +     I    D++T          K+    GF D  + NL +SI   +  
Sbjct: 442 KIISFLFEKK----FIFSEIDLYT------FDFYKLLEFKGFKDRKINNLINSIEASKKK 491

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              + + S+GI+ +G    R L   +L+  N   ++  +       +  L+++  +G+ I
Sbjct: 492 PFSKLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSILLKIKGIGEKI 548

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667
           A  I+E + +   +   +               +  +++   KK   TGT     R    
Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVI 608

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|293363574|ref|ZP_06610330.1| DNA ligase (NAD(+)) [Mycoplasma alligatoris A21JP2]
 gi|292552923|gb|EFF41677.1| DNA ligase (NAD(+)) [Mycoplasma alligatoris A21JP2]
          Length = 660

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 187/706 (26%), Positives = 335/706 (47%), Gaps = 51/706 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +  +    L + ++  ++ YY    P + D  YD   +    I   +P+       N P 
Sbjct: 4   EILERYKRLIENLNKWNNEYYNLDTPSVTDEVYDQEYQELLEIESMYPEAIL---ENSPS 60

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             IGG  +    K  H+ P LSL K     ++ KF   I++    ++     F LEPK+D
Sbjct: 61  QIIGGFASNKFSKYKHNKPMLSLNKANINSEIEKFYQDIFKVVTDQNKG---FFLEPKVD 117

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  I++ Y  GK V A  RGDG  GEDV+  I  I ++   L ++  E IE+RGEVY+SK
Sbjct: 118 GLSISLHYNNGKLVRAVTRGDGVFGEDVTENILQIKSVK--LKIDFLEEIEIRGEVYLSK 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQ 254
            +F  LN   +   +K +ANPRNAA+G LR+L+      R L+  ++ + +        Q
Sbjct: 176 KNFEKLNKTFLENDQKLFANPRNAAAGTLRQLDKKIVKQRNLDVVLYEIVQPENYNISTQ 235

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            + ++ ++ LG       +       I+   N+ +++++TL Y+ DGLV K ++F+    
Sbjct: 236 EDAIKFIKNLGLNTQKNNQLLFELSDILKAVNDFETMKNTLEYECDGLVIKYNDFTKWNL 295

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  ++ P++ I++K+  +QA T +  ID+ +GRTG +  VA +EPV++  + ++ ATLH
Sbjct: 296 LGFTSKFPKYAIAYKYKAEQAITTIRQIDVSVGRTGKINYVANVEPVSLNQSTVSKATLH 355

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N DYI+ L           ++ + D V++ +AGE+IPKV+ +    +      F     C
Sbjct: 356 NYDYIRDL-----------NLNINDEVVIIKAGEIIPKVISLH---KKNSLNSFEKVLNC 401

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C+S +               +    L C  + +  + +F S+   +I GLG + +   
Sbjct: 402 PSCKSVLETIDGN-------VDQYCLNLNCEEKIINSIIYFASKPCLDINGLGDKIVKIL 454

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           +++      I+   DI+ L  +      +I  +  F D  + NL  S+ + +  S+ + +
Sbjct: 455 YENN----IIKNIQDIYLLNNK----VEEIAKLRSFKDKKIENLLTSVEQSKGASISKVL 506

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            SLGI+++GA  ++ +AK           I+ +      +   L  +  +G    ++I  
Sbjct: 507 SSLGIKNIGARASKLIAKK----------IDKLEDLYYLNLNDLEDIADIGPKSVESIKL 556

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           + +N  N   +   L  +       + N   ++       TG L+  +R+     + Q G
Sbjct: 557 YLENESNKELI-MFLDNIFTYAHDKKANNEGKLNLLSFSITGKLEH-ERNYYISAIEQNG 614

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
                + +++T  +IVG N G SKL KA + G K++  ++F  L+ 
Sbjct: 615 GEFHTVPTKQTSYLIVGLNAGDSKLNKALKNGTKLLTLKEFDKLIN 660


>gi|224532693|ref|ZP_03673310.1| DNA ligase, NAD-dependent [Borrelia burgdorferi WI91-23]
 gi|224512311|gb|EEF82695.1| DNA ligase, NAD-dependent [Borrelia burgdorferi WI91-23]
          Length = 660

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 202/712 (28%), Positives = 346/712 (48%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       
Sbjct: 1   MS-SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++E
Sbjct: 57  DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEV
Sbjct: 111 PKIDGCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           YI+K +FL +N  +     KPY N RN ASGILRR++  ++  +           + +  
Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           K       +++ LGF VN  +R  +  +    +++Y  ++   R +  Y+IDG+V KV +
Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSD 284

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+L+++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA I
Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           T+ATLHN+DYI+ +            + VGD V V R G+VIP V  +I          F
Sbjct: 345 TSATLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   
Sbjct: 391 KVPDNCPACKTAVVKEG---------AHFFCQNNNCPSVAVERIKYFCSKNCMDIEGFSD 441

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + + F F+ +     I    D++T          K+    GF D  + NL +SI   +  
Sbjct: 442 KIISFLFEKK----FIFSEIDLYT------FDFYKLLEFKGFKDRKINNLINSIEASKKK 491

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              + + S+GI+ +G      L   +L+  N   ++  +       + +L+++  +G+ I
Sbjct: 492 PFSKLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKI 548

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667
           A  I+E + +   +   +               +  +++   KK   TGT     R    
Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVI 608

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|312147884|gb|ADQ30543.1| DNA ligase, NAD-dependent [Borrelia burgdorferi JD1]
          Length = 660

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 202/712 (28%), Positives = 346/712 (48%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       
Sbjct: 1   MS-SRVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++E
Sbjct: 57  DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEV
Sbjct: 111 PKIDGCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           YI+K +FL +N  +     KPY N RN ASGILRR++  ++  +           + +  
Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           K       +++ LGF VN  +R  +  +    +++Y  ++   R +  Y+IDG+V KV +
Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSD 284

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+L+++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA I
Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           T+ATLHN+DYI+ +            + VGD V V R G+VIP V  +I          F
Sbjct: 345 TSATLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   
Sbjct: 391 KVPDNCPACKTAVVKEG---------AHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSD 441

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + + F F+ +     I    D++T          K+    GF D  + NL +SI   +  
Sbjct: 442 KIISFLFEKK----FIFSEIDLYT------FDFYKLLEFKGFKDRKINNLINSIEASKKK 491

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              + + S+GI+ +G      L   +L+  N   ++  +       + +L+++  +G+ I
Sbjct: 492 PFSKLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKI 548

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667
           A  I+E + +   +   +               +  +++   KK   TGT     R    
Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVI 608

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|226321858|ref|ZP_03797384.1| DNA ligase, NAD-dependent [Borrelia burgdorferi Bol26]
 gi|226233047|gb|EEH31800.1| DNA ligase, NAD-dependent [Borrelia burgdorferi Bol26]
          Length = 660

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 202/712 (28%), Positives = 346/712 (48%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       
Sbjct: 1   MS-SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++E
Sbjct: 57  DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEV
Sbjct: 111 PKIDGCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           YI+K +FL +N  +     KPY N RN ASGILRR++  ++  +           + +  
Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           K       +++ LGF VN  +R  +  +    +++Y  ++   R +  Y+IDG+V KV +
Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSD 284

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+L+++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA I
Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSDFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           T+ATLHN+DYI+ +            + VGD V V R G+VIP V  +I          F
Sbjct: 345 TSATLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   
Sbjct: 391 KVPDNCPACKTAVVKEG---------AHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSD 441

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + + F F+ +     I    D++T          K+    GF D  + NL +SI   +  
Sbjct: 442 KIISFLFEKK----FIFSEIDLYT------FDFYKLLEFKGFKDRKINNLINSIEASKKK 491

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              + + S+GI+ +G      L   +L+  N   ++  +       + +L+++  +G+ I
Sbjct: 492 PFSKLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKI 548

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667
           A  I+E + +   +   +               +  +++   KK   TGT     R    
Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVI 608

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|21231024|ref|NP_636941.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768971|ref|YP_243733.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992085|ref|YP_001904095.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
           campestris str. B100]
 gi|81305065|sp|Q4UTB0|DNLJ_XANC8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81794799|sp|Q8PAB5|DNLJ_XANCP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254782312|sp|B0RUY2|DNLJ_XANCB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|21112648|gb|AAM40865.1| DNA ligase [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66574303|gb|AAY49713.1| DNA ligase [Xanthomonas campestris pv. campestris str. 8004]
 gi|167733845|emb|CAP52051.1| DNA ligase (NAD(+)) [Xanthomonas campestris pv. campestris]
          Length = 833

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 212/685 (30%), Positives = 336/685 (49%), Gaps = 82/685 (11%)

Query: 12  LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ++      + + +L Q I   +  Y+   +P I D EYD L R  +A+  A P+LA +  
Sbjct: 1   MTASPDPAQRIDALRQRIEDANYRYHVLDEPQIADVEYDRLLRELEALEAAHPELATA-- 58

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++G        +V H +P LSL   ++ E++ +F+ RI    ++K      F  
Sbjct: 59  -DSPTQRVGYLAASRFAEVRHVLPMLSLGNAFSDEEVAEFVRRISERLERK---QPVFCA 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189
           EPK+DG  I++RYE+G+FV  A RGDG +GEDVSA +R +  IP  L     PE++EVRG
Sbjct: 115 EPKLDGLAISLRYEQGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGTGWPEVLEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT-S 247
           EVY+ +  F A N +M   G K  ANPRN A+G LR+L+      R L+FF +G+G+   
Sbjct: 175 EVYMPRAAFEAYNAQMRLQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVAD 234

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                    ML ++R  GFPV+  V       G+++YY  +   R  LP+DIDG+VYK+D
Sbjct: 235 GALPPTHSTMLAQLREWGFPVSQLVEVVQGSEGLLTYYRRIGEARDGLPFDIDGVVYKLD 294

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q+++G  +R+PRW ++HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G +
Sbjct: 295 DLAGQREMGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVV 354

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNATLHN D I  L           D+RVGD V+V+RAG+VIP+V  ++  +R      
Sbjct: 355 VTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAGVVAEQRPAGTHA 403

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP+C S +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG
Sbjct: 404 WQMPTQCPVCGSEIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLG 457

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ ++    S      ++  AD++ L   Q      I                       
Sbjct: 458 EKFIEVLVDS----GVVQGVADLYLLNVDQLLQLRLISTADSPHAFLREAREHLAAGAYA 513

Query: 548 ISLERFIFSLGIRHVGAEIA--------------------RSLAKYY------------- 574
             +E+ +  +G+   G + A                    + +A  +             
Sbjct: 514 Q-VEQTMVGIGVDLAGVQPAPQTWQADLLRAGLPAFDWNRKKIATKWAENLIEAIETSRD 572

Query: 575 -----------------LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                             + +  +     +    +  W    RVP +G  +A+++  F+ 
Sbjct: 573 TTLERFLFALGIEHVGESTAKALSAWFGELDVIRHLPWPLFKRVPDIGGEVARSLGHFFD 632

Query: 618 NPRNICAVEALLKEVSPSIGRHEKN 642
              N  A++ LL+        H  +
Sbjct: 633 QAGNQQAIDDLLQRGVRIGDAHPPS 657



 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 22/183 (12%)

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
               +  L I  V    A+ LA    S+             +  D L    VP    +IA
Sbjct: 666 FAVLLEDLDIPKVTPVRAQQLAAATASFDALI--------ASEADPLLQAGVP--APVIA 715

Query: 610 QAIVEFYQNPRNICA-------VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            ++ ++   P N          ++ALL ++     + +   +  ++ + +V TGTL  + 
Sbjct: 716 -SLQQWLARPENAALATAAQRAMDALLAQL----PQADAVQAGPLDGQTVVITGTLAALT 770

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R  A++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + L  L ++ 
Sbjct: 771 RDAAKQRLESLGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLSEHG 830

Query: 723 TTL 725
             +
Sbjct: 831 QAV 833


>gi|291525249|emb|CBK90836.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Eubacterium rectale DSM 17629]
 gi|291529292|emb|CBK94878.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Eubacterium rectale M104/1]
          Length = 656

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 165/711 (23%), Positives = 288/711 (40%), Gaps = 63/711 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   + + ++  L + ++     YY  +  I+ + E+DA+      +             
Sbjct: 1   MENNKIKDKIDELVESLNRASKAYYNGADEIMPNYEWDAMFDELTQLEKE----TGYIRH 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P    G E      +  H  P LSL K  +IE+L+K+               +   L 
Sbjct: 57  DSPTQNAGYEAEAG-NREPHEYPALSLAKTKSIEELKKWA------------GDMPIWLS 103

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  + + Y+ G+ V    RG+G  G +++    AI   P    +     + VRGE 
Sbjct: 104 WKLDGLTLVLTYDGGRLVKILTRGNGTVGSNITFLQDAISGFP--KEIPYKGHMVVRGEA 161

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
            IS  DF  LND +       YANPRN ASG L   +  +   R++ F+   L    +  
Sbjct: 162 TISYTDFKLLNDTIEDDDE-KYANPRNLASGTLNLDDVEEVKRRHVVFYAFTLVHIDDDI 220

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                 M          V      A      V  +         +   +DGLV   D+ +
Sbjct: 221 ISWGDRMSYLSDMKFNVVKREATDAAGLDEAVKRWTR-DVESGRMDVPVDGLVICYDDTA 279

Query: 311 LQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
                        R   + K+ ++   TRL  I+     +  ++PVA  EPV I G  ++
Sbjct: 280 YAAGGSVTGHHATRAGFAFKWQDEAVDTRLRYIEWSCAVST-ISPVAVFEPVQIEGTTVS 338

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+L N   I+ L            +     + V +A ++IPK + +             
Sbjct: 339 RASLCNLTEIERL-----------GVGKECTLSVIKANKIIPKCIAVKDAV-----GAVE 382

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C       ++  +G  V    CT    C+A+ +++   FVS+   +I+GL  Q
Sbjct: 383 IPKECPVCHHPTRIFVSKNSG--VKTLHCTNP-DCTAKNVKKFSRFVSKSGMDIDGLSVQ 439

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +  F         I+   DI+ L         KI ++ GFG+ S  N+  +I K R++ 
Sbjct: 440 TMLKFINE----GFIKQFPDIYHLPEH----FDKISSMEGFGEKSCMNMQTAIEKSRHVH 491

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
               IF+L I  +G +  + +      +  FA  + N            + +  +G   +
Sbjct: 492 PVNLIFALCIPLIGTDAGKKIVNAIG-FDGFADRMRNAT--------DFVDIDGIGQEKS 542

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQE 668
            +I+E+Y NP+N    EAL+KE+       +      +  K  V TG +     R + + 
Sbjct: 543 GSILEWYANPKNSAMFEALIKELDIEKVDIKDMSEGSLNGKTFVITGDVHDFANRSEFKA 602

Query: 669 YVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFL 717
           YV   G  V+  +S+KTD ++    ++  SK +KA++LG+ I++E+ F+ +
Sbjct: 603 YVESQGGKVTGSVSKKTDYLVNNDTESTSSKNKKAKELGIPIISEDTFIEM 653


>gi|218249478|ref|YP_002375058.1| DNA ligase, NAD-dependent [Borrelia burgdorferi ZS7]
 gi|254781261|sp|B7J2B3|DNLJ_BORBZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218164666|gb|ACK74727.1| DNA ligase, NAD-dependent [Borrelia burgdorferi ZS7]
          Length = 660

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 202/712 (28%), Positives = 346/712 (48%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       
Sbjct: 1   MS-SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++E
Sbjct: 57  DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEV
Sbjct: 111 PKIDGCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           YI+K +FL +N  +     KPY N RN ASGILRR++  ++  +           + +  
Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           K       +++ LGF VN  +R  +  +    +++Y  ++   R +  Y+IDG+V KV +
Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADIIKKRDSFEYEIDGVVLKVSD 284

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+L+++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA I
Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSDFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           T+ATLHN+DYI+ +            + VGD V V R G+VIP V  +I          F
Sbjct: 345 TSATLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   
Sbjct: 391 KVPDNCPACKTAVVKEG---------AHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSD 441

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + + F F+ +     I    D++T          K+    GF D  + NL +SI   +  
Sbjct: 442 KIISFLFEKK----FIFSEIDLYT------FDFYKLLEFKGFKDRKINNLINSIEASKKK 491

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              + + S+GI+ +G      L   +L+  N   ++  +       + +L+++  +G+ I
Sbjct: 492 PFSKLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKI 548

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667
           A  I+E + +   +   +               +  +++   KK   TGT     R    
Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVI 608

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|51598803|ref|YP_072991.1| NAD-dependent DNA ligase LigA [Borrelia garinii PBi]
 gi|81609923|sp|Q660X2|DNLJ_BORGA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|51573374|gb|AAU07399.1| DNA ligase [Borrelia garinii PBi]
          Length = 660

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 209/713 (29%), Positives = 350/713 (49%), Gaps = 58/713 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +SI + ++E+  L++ I   D  YY  S P + D  YD    R   +    P+       
Sbjct: 1   MSI-KIQQEIEDLKKLIRKWDKEYYVDSLPSVEDFVYDNHILRLKELESRHPEYKTL--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K G ++  +  +V HS+P LSL+K+++++ L+ +I +I        +NS   ++E
Sbjct: 57  DSPTLKFGSDLLNNFEEVEHSVPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y+ G    A  RG+G  G DV+  IR I  IP  L   +   + +RGEV
Sbjct: 111 PKIDGCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHIPLFLDEKV--DLVLRGEV 168

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           YI+K +F  +N  +     KPY + RN ASGILRR++  ++  +           +E+  
Sbjct: 169 YITKENFFKINKFL----EKPYTSSRNLASGILRRVDSREVANFPLNIFIYDFLNAELEL 224

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           K     + K++ LGF V+  +R  +       +++Y  ++   R++  Y+IDG+V KV E
Sbjct: 225 KTNDLAIAKLKKLGFKVDPLIRFFDQKSSIIEVLNYIADITKKRNSFEYEIDGVVLKVSE 284

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F L+++LG  +  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA I
Sbjct: 285 FVLREKLGYTSHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNATLHN+DYI  +            + VGD V V R G+VIP V  +I          F
Sbjct: 345 TNATLHNQDYIISI-----------GLNVGDVVKVSRRGDVIPAVEMVINKCSKG---VF 390

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C++ +V++          AH      +C +  +ER+K+F S++  +IEG   
Sbjct: 391 KVPDNCPACKTVLVKEG---------AHFFCTNNSCPSVAVERIKYFCSKNCMDIEGFSD 441

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + + F F+ E     I    D++T       +  K+    GF D  V NL +SI   +  
Sbjct: 442 KTISFLFEKE----FISSEIDLYT------FNFYKLLKFKGFKDRKVYNLINSIEASKKK 491

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              + + S+GI+ +G    R L   +L+  N   ++  +    N  + +L+++  +G+ I
Sbjct: 492 PFSKLLLSIGIKELGENAIRLL---FLNNLNSFSKLFRLCQDRNFAFSTLLKIKGIGEKI 548

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  I+E + +   +       + +   +       + +  +  KK   TGT     R   
Sbjct: 549 ALNIIEAFNDSTMLNKF-KFFENLGFKMEESILIDDENRLLAGKKFCITGTFNGYSRSII 607

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + +   GA+    ++   D +IVG+  GSKLEKA  L VKIM+ E     L 
Sbjct: 608 IDKLKNKGAIFKTCVTEGLDFLIVGEKAGSKLEKALNLNVKIMSFEDIKSYLN 660


>gi|325915467|ref|ZP_08177781.1| DNA ligase, NAD-dependent [Xanthomonas vesicatoria ATCC 35937]
 gi|325538349|gb|EGD10031.1| DNA ligase, NAD-dependent [Xanthomonas vesicatoria ATCC 35937]
          Length = 833

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 209/684 (30%), Positives = 337/684 (49%), Gaps = 80/684 (11%)

Query: 12  LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           +++     + + +L + I   +  Y+   +P + D +YD L R  +A+    P LA +  
Sbjct: 1   MTVSPDPAQRIDALRRRIEDANYRYHVLDEPQMADVDYDRLMRELEALEAEHPALATA-- 58

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++G        +V H++P LSL   ++ E++ +F+ RI    + K      F+ 
Sbjct: 59  -DSPTQRVGHLAASRFAEVRHALPMLSLGNAFSDEEVSEFVRRISERLEVK---QPVFSA 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189
           EPK+DG  I++RYE G+FV  A RGDG +GEDVSA +R +  IP  L     P+++EVRG
Sbjct: 115 EPKLDGLAISLRYEDGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGQGWPKVLEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT-S 247
           EVY+ +  F A N  M A G K  ANPRN A+G LR+L+      R L+FF +G+G+  +
Sbjct: 175 EVYMPRAAFEAYNAHMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVGN 234

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               +    +L ++R  GFPV+  V       G+++YY  + + R  L +DIDG+VYK+D
Sbjct: 235 GALPQTHSAILAQLRDWGFPVSQLVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLD 294

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q+++G  +R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G +
Sbjct: 295 DLAGQREMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVI 354

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNATLHN D I  L           D+RVGD V+V+RAG+VIP+V  ++ ++R P  Q 
Sbjct: 355 VTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAGVVADQRQPGTQE 403

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP+C S +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG
Sbjct: 404 WRMPTHCPVCGSEIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLG 457

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ ++    S      ++  AD++ L   Q      I                       
Sbjct: 458 EKFIEVLVDS----GLVQGVADLYLLTVDQLLQLRLISTADSPHAFLREAREHLATGAYA 513

Query: 548 ISLERFI---------------------------FSLGIRHVGAEIARSLAKYYL----- 575
                 +                           F    R +  + A +L +        
Sbjct: 514 QLEATMMRIGVDLAGEHEAPQTWQADLLRAGLPSFDWNRRKIATKWAENLIEAIETSRNT 573

Query: 576 -----------------SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
                            + +  +    ++    +  W    RVP +G  +A+++  F+  
Sbjct: 574 TLERFLFALGIEHVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQ 633

Query: 619 PRNICAVEALLKEVSPSIGRHEKN 642
           P N  A++ LL+        H  +
Sbjct: 634 PGNQQAIDDLLQRGVRIGDAHPPS 657



 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 16/177 (9%)

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE-INNIIAHNNDDWLSLIRVPLVGDII 608
               +  + I  V    A+ LA    S+        + ++                  ++
Sbjct: 666 FASVLEDMDIPKVTPVRAQQLAAAVPSFDALRDAGSDALLQAGVPA-----------PVV 714

Query: 609 AQAIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A A++++   P N       +  ++ V   +   E   +  ++ + +V TGTL  + R  
Sbjct: 715 A-ALLQWLDRPENAALATSAQRAMETVLARLPEAEAVQAGPLDGQTVVITGTLTALTRDA 773

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           A++ +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + L  L ++ 
Sbjct: 774 AKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLAEHG 830


>gi|224533503|ref|ZP_03674092.1| DNA ligase, NAD-dependent [Borrelia burgdorferi CA-11.2a]
 gi|224513176|gb|EEF83538.1| DNA ligase, NAD-dependent [Borrelia burgdorferi CA-11.2a]
          Length = 660

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 201/712 (28%), Positives = 345/712 (48%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       
Sbjct: 1   MS-SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTL--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K G ++     +V HS P LSL+K+++++ L+ +I +I        +NS   ++E
Sbjct: 57  DSPTLKFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y+ G    A  RG+G  G DV+  +R I  IP  L   +   + +RGEV
Sbjct: 111 PKIDGCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKV--DLVLRGEV 168

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           YI+K +FL +N  +     KPY N RN ASGILRR++  ++  +           + +  
Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           K       +++ LGF VN  +R  +  +    +++Y  ++   R +  Y+IDG+V KV +
Sbjct: 225 KTNDLATARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSD 284

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+L+++LG  A  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA I
Sbjct: 285 FALRERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           T+ATLHN+DYI+ +            + VGD V V R G+VIP V  +I          F
Sbjct: 345 TSATLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   
Sbjct: 391 KVPDNCPACKTAVVKEG---------AHFFCQNNNCPSVAVERIKYFCSKNCMDIEGFSD 441

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + + F F+ +     I    D++T          K+    GF D  + NL +SI   +  
Sbjct: 442 KIISFLFEKK----FIFSEIDLYT------FDFYKLLEFKGFKDRKINNLINSIEASKKK 491

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              + + S+GI+ +G      L   + +  N   ++  +       + +L+++  +G+ I
Sbjct: 492 PFSKLLLSMGIKDLGENTIMLL---FFNNFNSFSKLFKLCQDRYFAFSTLLKIKGIGEKI 548

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667
           A  I+E + +   +   +               +  +++   KK   TGT     R    
Sbjct: 549 ALNIIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKLLAGKKFCITGTFNGYSRSIVI 608

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +   GA+ +  ++   D +IVG+  GSKL+KA  L +KIM+ E     L 
Sbjct: 609 DKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFEDIKSYLD 660


>gi|294665962|ref|ZP_06731226.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604265|gb|EFF47652.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 833

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 218/685 (31%), Positives = 343/685 (50%), Gaps = 82/685 (11%)

Query: 12  LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           +++     + + +L + I   +  Y+   +P + D++YD L R  +A+  A P+LA    
Sbjct: 1   MTVSPDPAQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELA---S 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++G        +V H++P LSL   ++ E++ +F+ RI    + K      F+ 
Sbjct: 58  ADSPTQRVGHLAASRFAEVRHALPMLSLGNAFSDEEVAEFVRRIGERLEVK---QPLFSA 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189
           EPK+DG  I++RYE G+FV  A RGDG +GEDVSA +R +  IP  L     P+++EVRG
Sbjct: 115 EPKLDGLAISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248
           EVY+ +  F A N +M A G K  ANPRN A+G LR+L+      R L+FF +G+G+ SE
Sbjct: 175 EVYMPRAAFEAYNAQMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSE 234

Query: 249 -IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               +    +L ++R  GFPV+  V       G+++YY  +   R  L +DIDG+VYK+D
Sbjct: 235 GALPQTHSAILAQLRAWGFPVSALVEVVQGSDGLLAYYQRIGEARDGLAFDIDGVVYKLD 294

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q+++G  +R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G +
Sbjct: 295 DLAGQREMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVI 354

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNATLHN D I  L           D+RVGD V+V+RAG+VIP+V  ++ ++R P  Q 
Sbjct: 355 VTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQA 403

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP+C S +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG
Sbjct: 404 WQMPTQCPVCGSEIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLG 457

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ ++    S      ++  AD++ L   Q      I                  +    
Sbjct: 458 EKFIEVLVDS----GLVKGVADLYLLSVDQLLQLRLISTADSPHAFLREAREHLASGAYA 513

Query: 548 ISLERFIFSLGIRHVGAE------IARSLAKYYLSYQ------------NFAQEINNIIA 589
             LE  +  +G+   G         A  L     S+             N  + I     
Sbjct: 514 Q-LEASVVGIGVDLAGERDVPQTWQADLLRAGLPSFDWNRKKIATKWAENLIEAIETSRD 572

Query: 590 HNNDDW-----------------------LSLI---------RVPLVGDIIAQAIVEFYQ 617
              + +                       L LI         RVP +G  +A+++  F+ 
Sbjct: 573 TTLERFLFALGIEHVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFD 632

Query: 618 NPRNICAVEALLKEVSPSIGRHEKN 642
              N  A++ LL+        H  +
Sbjct: 633 QAGNQQAIDDLLQRGVRIGDTHPPS 657



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 6/149 (4%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLV-GDIIAQAIVEFYQNPRNICAVEAL---LKEVS 633
           Q  A  +++  A       +L +   V   ++A  ++++   P N     A    ++ V 
Sbjct: 684 QQLAAAVDSFAALRTAGADALQQ-AGVPAPVVAT-LLQWLDRPENAALASAAQQAMETVL 741

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
             +   +   +  ++ + +V TGTL  + R  A++ +  LGA V+  +S+KT  ++ G+ 
Sbjct: 742 ARLPEADALQTGPLDGQTVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEE 801

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            GSKL+KAQ LGV+I +E + L  L  + 
Sbjct: 802 AGSKLDKAQSLGVEIWDEARLLVFLGDHG 830


>gi|254420802|ref|ZP_05034526.1| DNA ligase, NAD-dependent [Brevundimonas sp. BAL3]
 gi|196186979|gb|EDX81955.1| DNA ligase, NAD-dependent [Brevundimonas sp. BAL3]
          Length = 776

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 255/608 (41%), Positives = 359/608 (59%), Gaps = 29/608 (4%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
               P+E L+ E A +EL+ L  E++ HD  Y   + P I D++YDAL+ R  AI  AFP
Sbjct: 6   PPFPPVEDLTAETAAEELAWLAAEMARHDALY-NEATPEISDADYDALRARNLAIETAFP 64

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           DL R   P+ P +K+G  ++    +V H +P LSL+  ++  ++R F+ RI RF +   D
Sbjct: 65  DLVR---PDSPSHKVGAAVSSQFAEVRHGVPMLSLDNAFDEGEVRDFVARIARFLKLPSD 121

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIP 182
             I F  EPKIDG    + Y  G+    A RGDG +GEDV+A +  I  + + L+  + P
Sbjct: 122 EPIAFVAEPKIDGLSANLLYVDGRLTLGATRGDGRTGEDVTANLNTIADVKQTLAGDDWP 181

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVH 241
           + IE+RGEVY     F A N    A GR+ YANPRN A+G LR+ +     +   NFF +
Sbjct: 182 DRIEIRGEVYAPNAAFAAFNAAAEAEGRRTYANPRNFAAGSLRQKDARITGKRPLNFFAY 241

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             G+ S  FA+ Q+E LQK++  GFPVN   R+     G+++ Y E++  R+TL YDIDG
Sbjct: 242 AWGEHSSDFAETQWEALQKLKAWGFPVNARSRRVEGAEGLIAVYRELERDRATLGYDIDG 301

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +VYKVD    Q++LG  ARSPRW I+HKF  +QA+T L  IDIQ+GRTG LTPVARL PV
Sbjct: 302 VVYKVDRLDWQRRLGFVARSPRWAIAHKFPAQQATTVLEGIDIQVGRTGSLTPVARLHPV 361

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +GG ++ NATLHNED I+ L           D+R+GD V ++RAG+VIP+++ ++ + R
Sbjct: 362 TVGGVVVRNATLHNEDEIERL-----------DVRIGDTVRLQRAGDVIPQILGVVPDLR 410

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             DA P+ FP  CP+C S  VR+ +          RCTGGL C AQ +ERLKHFV R AF
Sbjct: 411 PADAVPYVFPDKCPVCGSEAVREGDE------VKRRCTGGLICDAQIVERLKHFVGRRAF 464

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IEGLG++QL  F         I+ PADIF L  R +    ++E   G+G+ S+ NL   
Sbjct: 465 DIEGLGEKQLAAFNAR----GWIKEPADIFRL-ARDEARLKELEREDGYGETSIRNLVAG 519

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE-INNIIAHNNDDWLSLIR 600
           I+ RR ISL+RF+F LGIR +G + +  LA+ + S+       +       +D W +L  
Sbjct: 520 IDARRVISLDRFLFGLGIRDIGEQTSIVLARAFESWPALKAACLQAASGVPSDAWTALAG 579

Query: 601 VPLVGDII 608
              +   +
Sbjct: 580 AHAISPRV 587



 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 1/164 (0%)

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           S     + A   RSLA     +    +          ++    +  V  VG + A A+  
Sbjct: 612 SQAFPGMAAPARRSLATMTGDWSGLVELARVAREEGPSEILNQIAGVTGVGPVAALALAH 671

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           F+  P N+  V AL  E++  +        + +  K +VFTG L++  R +A+     LG
Sbjct: 672 FFHEPHNLQVVAALEAELTQILDAERPKSDTPVAGKTVVFTGALERFTRDEAKARAESLG 731

Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A VS  +S+KTD ++ G   GSKL+ A++ GV+++ E+++L L+
Sbjct: 732 AKVSGSVSKKTDYLVAGPGAGSKLKDAEKHGVQVLTEDEWLALI 775


>gi|224531714|ref|ZP_03672346.1| DNA ligase, NAD-dependent [Borrelia valaisiana VS116]
 gi|224511179|gb|EEF81585.1| DNA ligase, NAD-dependent [Borrelia valaisiana VS116]
          Length = 660

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 202/713 (28%), Positives = 350/713 (49%), Gaps = 58/713 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + ++E++ L++ I   D  YY  S P + D  YD    R   +   +P+       
Sbjct: 1   MS-SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFIYDKHILRLQELESKYPEYKTL--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K G ++     +V HS+P LSL+K++++  L+ +I +I        ++S   ++E
Sbjct: 57  DSPTLKFGSDLLNDFEEVEHSVPILSLDKVYDLNLLKTWIDKI------DFNDSFNISVE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y+ G    A  RG+G  G DV+  ++ I  IP  L   +   + +RGEV
Sbjct: 111 PKIDGCSIVLYYKGGILEKALTRGNGKFGNDVTKNVKTIRYIPLFLDEEV--DLVLRGEV 168

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           YI+K +F  +N  +     KPY+N RN ASGILRR++  ++  +           + +  
Sbjct: 169 YITKENFFKINKFL----EKPYSNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEF 224

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANT---FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           K       +++ LGF VN  +R  +       ++SY  ++   R++  Y+IDG+V KV +
Sbjct: 225 KTNNLATARLKKLGFKVNPLIRFFDQKSSIKEVLSYIADITKKRNSFEYEIDGVVLKVSD 284

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           FSL+++LG  +  P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA I
Sbjct: 285 FSLRERLGYTSHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNATLHN+DYI  +           D+ VGD V V R G+VIP V  +I          F
Sbjct: 345 TNATLHNQDYIMSI-----------DLNVGDVVKVSRRGDVIPAVEMVINKFSTG---FF 390

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C++ +V++          AH       C +  +ER+K+F S++  +IEG   
Sbjct: 391 KIPENCPACKTVLVKEG---------AHFFCTNNNCPSVVIERIKYFCSKNCMDIEGFSD 441

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + + F F+ +     I    D++        +  K+    GF    V+NL +SI   +  
Sbjct: 442 KIISFLFEKK----FISSEIDLY------IFNFCKLFEFKGFKGKRVSNLINSIEASKKK 491

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              + + S+GI+ +G    R L   +L+  N   ++ ++    +  + +L+++  +G+ I
Sbjct: 492 PFSKLLLSMGIKELGENTIRLL---FLNNLNSFSKLFSLCQDKDFAFSTLLKIKGIGEKI 548

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  I+E + +   I       + +   +         S  + +KK   TGT     R   
Sbjct: 549 ALNIIEAFNDSIMINKF-KFFENLEFKMEECIVIDGESRLLADKKFCITGTFDGYSRPII 607

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + +   GA+  A +++  D ++ G+  GSKL+KA  L +KIM+ E     L 
Sbjct: 608 IDKLKNKGAIFKACVTKDLDFLVAGEKAGSKLKKALNLNIKIMSFEDIKSYLD 660


>gi|269794376|ref|YP_003313831.1| DNA ligase, NAD-dependent [Sanguibacter keddieii DSM 10542]
 gi|269096561|gb|ACZ20997.1| DNA ligase, NAD-dependent [Sanguibacter keddieii DSM 10542]
          Length = 871

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 190/650 (29%), Positives = 301/650 (46%), Gaps = 78/650 (12%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +  AR   + L + I  H   YY    P + D+EYD L R    I  A P L     P+ 
Sbjct: 41  LSAARTRWAELAETIEAHQFAYYVRDAPTVSDAEYDTLLRELGDIEEAHPQL---RTPDS 97

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG  +     V H    LSL+  +N EDL  +  R++R       + + +  E K
Sbjct: 98  PTQRVGGTFSTDFAAVDHREQMLSLDNAFNAEDLDAWAERVHREIG---TSQVHYLCEVK 154

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI---IEVRGE 190
           IDG  I + YEKG+ V AA RGDG +GEDV+  +  I  IP+ L  ++ E+   IE+RGE
Sbjct: 155 IDGLAIALLYEKGRLVRAATRGDGRTGEDVTLNVLTIEGIPKALDASVREVPDLIEIRGE 214

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           V++  + F ALN+  +A G+ P+ANPRNAA+G LR+ NP     R L  + HG+G     
Sbjct: 215 VFMLVDQFAALNEAQVAAGKPPFANPRNAAAGSLRQKNPKITAGRPLRMYAHGVGALHWE 274

Query: 250 -----FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                  + Q +     R  G PV++  R      G+    +     R  + +++DG+V 
Sbjct: 275 AGTPSELRRQSDAYDYFRAWGVPVSDHNRVVEGMPGVQEMIDYYGDHRHDIEHELDGIVV 334

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KVDE +LQ+QLG  +R+PRW I++K+  ++ +T LLDI + +GRTG +TP   +EPV + 
Sbjct: 335 KVDELALQRQLGATSRAPRWAIAYKYPPEEVNTTLLDILVNVGRTGRVTPFGMMEPVLVA 394

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G+ ++ ATLHN   ++            + + +GD V++++AG+VIP++V  +V+ R   
Sbjct: 395 GSTVSMATLHNGSEVRR-----------KGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGS 443

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            + F  P+ CP C + +         +     RC    +C +Q  ER+ H   R AF+IE
Sbjct: 444 EREFVMPTECPSCGTTLA-----PAKEGDVDIRCPNQRSCPSQLRERVFHLAGRGAFDIE 498

Query: 485 GLGKQQLDFFFKSED--------------------PAFSIRIPAD------IFTLQRRQQ 518
            +G +        E                      A       D      ++  +++  
Sbjct: 499 AMGWEAAIALVDPEHNRPESADAEGVPVQVPVLETEAGFFDFEVDALADVLVWREKKKAG 558

Query: 519 TSTTKIENILGFGDV-----------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
             T   E +  F              +    ++   K +   L R + +L IRHVG   A
Sbjct: 559 VGTGVWEQVPFFWTKATAKTPSKPSATTVKFFEEREKAKARPLWRVLVALSIRHVGPTAA 618

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           R+LA  + S +                   L     VG  IA+A+  ++ 
Sbjct: 619 RALATAFESVEAIMAATE----------EELAATEGVGPTIARAVRIWFN 658



 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 2/115 (1%)

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
             +   ++             ++++   +E   +V TG+L+   R + +E +   G   +
Sbjct: 738 DWHREIIDRWRAAGVRMRDERDESIVRTLEGFTVVVTGSLEGFNRDQVKEAIIVRGGKAA 797

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY--NTTLRIHDDD 731
             +S+KTD ++VG+N GSK  KA++LG+ I++E  F+ LL +        + DDD
Sbjct: 798 GSVSKKTDFVVVGENAGSKEAKARELGLTILDEAGFVTLLAEGPPAAAEPLLDDD 852


>gi|111115379|ref|YP_709997.1| DNA ligase [Borrelia afzelii PKo]
 gi|123145685|sp|Q0SMV7|DNLJ_BORAP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110890653|gb|ABH01821.1| DNA ligase [Borrelia afzelii PKo]
          Length = 660

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 205/712 (28%), Positives = 351/712 (49%), Gaps = 56/712 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S  + ++E++ L++ I   D  YY  S P + D  YD    R   +    P+       
Sbjct: 1   MS-SKIQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKCPEYKTL--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K G ++     +V HS+P LSL+K++N++ L+ +I +I         NS   ++E
Sbjct: 57  DSPTLKFGSDLLNDFKEVEHSVPVLSLDKVYNLDLLKSWIDKI------DFSNSFNISVE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y+ G    A  RG+G  G DV+  IR I  +P  L   +   + +RGEV
Sbjct: 111 PKIDGCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHVPLFLGEKV--DLVLRGEV 168

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           YI+K +FL +N  +     KPY N RN ASGILRR++  ++  +           + +  
Sbjct: 169 YITKENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLDF 224

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANT---FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           K     ++K++ LGF VN  +R  +       +++Y  ++   R++  Y+IDG+V KV +
Sbjct: 225 KTNNLAIEKLKKLGFKVNPLIRFFDQKSSIKEVLNYIADITKKRNSFEYEIDGVVLKVSD 284

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+L+++LG     P+W +++KF      +++  I +Q+GR+G +TPVA ++ V + GA I
Sbjct: 285 FALREKLGYTLHHPKWAMAYKFEALSGFSKVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNATLHN+DYI  +           ++ VGD V V R G+VIP V  +I          F
Sbjct: 345 TNATLHNQDYITSI-----------NLNVGDIVKVSRRGDVIPAVEMVINKFSTG---FF 390

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             P  CP C++ VV++          AH       C +  +ER+K+F S++  +IEG   
Sbjct: 391 KVPDKCPSCKTVVVKEG---------AHFFCTNNNCPSVAVERIKYFCSKNCMDIEGFSD 441

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + + F F+ +     I    D++T       +  K+    GF D  + NL +SI   +  
Sbjct: 442 KTISFLFEKK----FISSEIDLYT------FNFYKLLKFKGFKDRKINNLINSIEASKKK 491

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              + + S+GI+ +G    R L   +L+  N   ++  +    +  +L+L+++  +G+ I
Sbjct: 492 PFSKLLLSIGIKELGENTIRLL---FLNNLNSFSKLFRLCQDRDFAFLTLLKIKGIGEKI 548

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQ 667
           A  I++ + N   I   +           R   +  +++   KK   TG+     R    
Sbjct: 549 ALNIIDAFNNSIMINKFKVFENLGFKMEERILIDDENKLLVGKKFCITGSFNGYSRPIVI 608

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +   GA+    +++  D ++VG+  G+KL+KA  L VKIM+ E     L 
Sbjct: 609 DKLENKGAIFKTCVTKGLDFLVVGEKAGTKLKKALNLNVKIMSFEDIKSYLD 660


>gi|294626370|ref|ZP_06704972.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292599371|gb|EFF43506.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 833

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 218/677 (32%), Positives = 340/677 (50%), Gaps = 81/677 (11%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + + +L + I   +  Y+   +P + D++YD L R  +A+  A P+LA     + P  ++
Sbjct: 9   QRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELA---SADSPTQRV 65

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G        +V H++P LSL   ++ E++ +F+ RI    + K      F+ EPK+DG  
Sbjct: 66  GHLAASRFAEVRHALPMLSLGNAFSDEEVAEFVRRIGERLEVK---QPLFSAEPKLDGLA 122

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKND 197
           I++RYE G+FV  A RGDG +GEDVSA +R +  IP  L     P+++EVRGEVY+ +  
Sbjct: 123 ISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRGEVYMPRAA 182

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE-IFAKGQY 255
           F A N +M A G K  ANPRN A+G LR+L+      R L+FF +G+G+ SE    +   
Sbjct: 183 FEAYNAQMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQTHS 242

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
            +L ++R  GFPV+  V       G+++YY  +   R  L +DIDG+VYK+D+ + Q+++
Sbjct: 243 AILAQLRAWGFPVSALVEVVQGSDGLLAYYQRIGEARDGLAFDIDGVVYKLDDLAGQREM 302

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  +R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLHN
Sbjct: 303 GFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHN 362

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I  L           D+RVGD V+V+RAG+VIP+V  ++ ++R P  Q +  P+ CP
Sbjct: 363 ADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCP 411

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C S +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG++ ++   
Sbjct: 412 VCGSEIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLV 465

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
            S      ++  AD++ L   Q      I                  +      LE  + 
Sbjct: 466 DS----GLVKGVADLYLLSVDQLLQLRLISTADSPHAFLREAREHLASGAYAQ-LEASVV 520

Query: 556 SLGIRHVGAE------IARSLAKYYLSYQ------------NFAQEINNIIAHNNDDW-- 595
            +G+   G         A  L     S+             N  + I        + +  
Sbjct: 521 GIGVDLAGERDVPQTWQADLLRAGLPSFDWNRKKIATKWAENLIEAIETSRDTTLERFLF 580

Query: 596 ---------------------LSLI---------RVPLVGDIIAQAIVEFYQNPRNICAV 625
                                L LI         RVP +G  +A+++  F+    N  A+
Sbjct: 581 ALGIEHVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAI 640

Query: 626 EALLKEVSPSIGRHEKN 642
           + LL+        H  +
Sbjct: 641 DDLLQRGVRIGDTHPPS 657



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 6/149 (4%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLV-GDIIAQAIVEFYQNPRNICAVEAL---LKEVS 633
           Q  A  +++  A       +L +   V   ++A  ++++   P N     A    ++ V 
Sbjct: 684 QQLAAAVDSFAALRTAGADALQQ-AGVPAPVVAT-LLQWLDRPENAALASAAQQAMETVL 741

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
             +   +   +  ++ + +V TGTL  + R  A++ +  LGA V+  +S+KT  ++ G+ 
Sbjct: 742 ARLPEADALQTGPLDGQTVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEE 801

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            GSKL+KAQ LGV+I +E + L  L  + 
Sbjct: 802 AGSKLDKAQSLGVEIWDEARLLVFLGDHG 830


>gi|238924576|ref|YP_002938092.1| DNA ligase, NAD-dependent [Eubacterium rectale ATCC 33656]
 gi|238876251|gb|ACR75958.1| DNA ligase, NAD-dependent [Eubacterium rectale ATCC 33656]
          Length = 656

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 165/711 (23%), Positives = 288/711 (40%), Gaps = 63/711 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +   + + ++  L + ++     YY  +  I+ + E+DA+      +             
Sbjct: 1   MENNKIKDKIDELVESLNRASKAYYNGADEIMPNYEWDAMFDELTQLEKE----TGYIRH 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P    G E      +  H  P LSL K  +IE+L+K+               +   L 
Sbjct: 57  DSPTQNAGYEAEAG-NREPHEYPALSLAKTKSIEELKKWA------------GDMPIWLS 103

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  + + Y+ G+ V    RG+G  G +++    AI   P    +     + VRGE 
Sbjct: 104 WKLDGLTLVLTYDGGRLVKILTRGNGTVGSNITFLQDAISGFP--KEIPYKGHMVVRGEA 161

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
            IS  DF  LND +       YANPRN ASG L   +  +   R++ F+   L    +  
Sbjct: 162 TISYTDFKLLNDTIEDDDE-KYANPRNLASGTLNLDDVEEVKRRHVVFYAFTLVHIDDDI 220

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                 M          V      A      V  +         +   +DGLV   D+ +
Sbjct: 221 ISWGDRMSYLSDMKFNVVKREATDAAGLDEAVKRWTR-DVESGRMDVPVDGLVICYDDTA 279

Query: 311 LQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
                        R   + K+ ++   TRL  I+     +  ++PVA  EPV I G  ++
Sbjct: 280 YAAGGSVTGHHATRAGFAFKWQDEAVDTRLRYIEWSCAVST-ISPVAVFEPVQIEGTTVS 338

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+L N   I+ L            +     + V +A ++IPK + +             
Sbjct: 339 RASLCNLTEIERL-----------GVGKECTLSVIKANKIIPKCIAVKDAV-----GEVE 382

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP+C       ++  +G  V    CT    C+A+ +++   FVS+   +I+GL  Q
Sbjct: 383 IPKECPVCHHPTRIFVSKNSG--VKTLHCTNP-DCTAKNVKKFSRFVSKSGMDIDGLSVQ 439

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +  F         I+   DI+ L         KI ++ GFG+ S  N+  +I K R++ 
Sbjct: 440 TMLKFINE----GFIKQFPDIYHLPEH----FDKISSMEGFGEKSCMNMQTAIEKSRHVH 491

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
               IF+L I  +G +  + +      +  FA  + N            + +  +G   +
Sbjct: 492 PVNLIFALCIPLIGTDAGKKIVNAIG-FDGFADRMRNAT--------DFVDIDGIGQEKS 542

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQE 668
            +I+E+Y NP+N    EAL+KE+       +      +  K  V TG +     R + + 
Sbjct: 543 GSILEWYANPQNSTMFEALIKELDIEKVDIKDMSEGSLNGKTFVITGDVHDFANRSEFKA 602

Query: 669 YVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFL 717
           YV   G  V+  +S+KTD ++    ++  SK +KA++LG+ I++E+ F+ +
Sbjct: 603 YVESQGGKVTGSVSKKTDYLVNNDTESTSSKNKKAKELGIPIISEDTFIEM 653


>gi|300704237|ref|YP_003745840.1| DNA ligase [Ralstonia solanacearum CFBP2957]
 gi|299071901|emb|CBJ43230.1| DNA ligase [Ralstonia solanacearum CFBP2957]
          Length = 813

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 222/647 (34%), Positives = 331/647 (51%), Gaps = 61/647 (9%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           + +   YY   +P + D+EYD L R  +A+    P L     P+ P  ++GG +      
Sbjct: 25  NRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPAL---RTPDSPTLRVGGAVLPEFAP 81

Query: 89  VTHSIPTLSLEKIWNI--EDLRKFITRIYRFWQKKD-DNSIFFTLEPKIDGTMITIRYEK 145
           V H +P LS+    +   +    F   + R     + D  + +  E K DG  I +RYE+
Sbjct: 82  VRHVVPMLSIRTETDTTADGALAFDASVRRELGLAESDPPVEYAAELKFDGLAINLRYEQ 141

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLALN 202
           G  V AA RGDG +GEDV+  IR I  IP   R +   +P+++EVRGEVY+ ++DF  LN
Sbjct: 142 GFLVQAATRGDGTTGEDVTQNIRTIRQIPLGLRPVDGAVPDVLEVRGEVYMRRDDFERLN 201

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGK--TSEIFAKGQYEMLQ 259
                 G K + NPRN A+G +R+L+P        +FF +GLG+        +    ML 
Sbjct: 202 ARQRERGEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSAMPETHSGMLD 261

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +  LGFPV+          G+V ++  + + R +LP+DIDG+VYKV+  +LQ++LG R 
Sbjct: 262 ALVALGFPVSRERAAVKGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNSLALQRELGFRT 321

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           R PRW ++HK+  ++A T +  I +Q+GRTG +TPVARL PV +GG  +TNATLHNED +
Sbjct: 322 REPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEV 381

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER---------------HPD 424
           +            +D+RVGD V+V+RAG+VIP+VV +++  R                P 
Sbjct: 382 RR-----------KDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNAAQQPK 430

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
             PF  P  CP+C S VVR+         A  RC+GGL CSAQ+ E ++HF  R   +IE
Sbjct: 431 HPPFELPKSCPVCGSHVVREEGE------AVARCSGGLFCSAQRKEAIRHFAGRRMMDIE 484

Query: 485 GLGKQQLDFFFKSEDPAF---SIRIPADIFTLQRRQQTSTTKIENILG----FGDVSVTN 537
           GLG++ +D   + E         R+  D F   +R+      +                N
Sbjct: 485 GLGERYIDNLVELEYVHGIADLYRLTLDAFLEMKRRADERDGVTPETVAAGKIATKWAEN 544

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L   I   +   L RF+F+LGIRHVG   A++LA +  S     +    +          
Sbjct: 545 LLAGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAVIRRAPAPL---------- 594

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
           L+ +P VG  +A+AI +F+  P+N  A++ALL       G H  +  
Sbjct: 595 LLTLPDVGATVAEAIADFFDEPKNQQALDALLAAGVAPQGEHPPSAK 641



 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 17/166 (10%)

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG+  + A  ++ LA    +    A            D   L  +P     ++ +++++ 
Sbjct: 655 LGVPKLTAIRSKQLAALVPTLAQLATA----------DAAQLEGLP---AEVSASLLDWL 701

Query: 617 QNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +   +      ++AL  E+  ++   E      +  K +V TGTL  + R  A+  +   
Sbjct: 702 EADGHRARLAQLDALRAELLAAMPA-ETAEEGALSGKTVVLTGTLPNLTRDAAKAMLEAA 760

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           GA VS  +S+KTD ++ G+  GSKL KA +LGVK+++E   L LLQ
Sbjct: 761 GAKVSGSVSKKTDYVVAGEEAGSKLAKAAELGVKVLDEAGMLALLQ 806


>gi|284931737|gb|ADC31675.1| DNA ligase [Mycoplasma gallisepticum str. F]
          Length = 715

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 204/747 (27%), Positives = 344/747 (46%), Gaps = 83/747 (11%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  ++ +  L ++++  +  YY  S P + D  YD   R        +P    S     P
Sbjct: 7   ESIKEIIEDLVKKLTKWEHEYYVLSNPSVSDEVYDNTYRTLLGYERKYPQYVLSY---SP 63

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G  ++    KV H    LSL   +N E+L  F   I +  +++D+    + LEPKI
Sbjct: 64  TQRVGSSISNKFIKVKHDYLMLSLGNCFNFEELLNFNENIAKISKQEDN---PYVLEPKI 120

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I++ Y  G    A  RGDG  GE V A I+ I TIP  ++  I +I  +RGEVY+S
Sbjct: 121 DGLSISLIYLDGVLSEALTRGDGVFGESVIANIKTIKTIPLKINTTIKKI-VIRGEVYVS 179

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKG 253
             DF A+N        K +AN RN ASG LR ++ ++   R LN F + +    E+  + 
Sbjct: 180 NQDFEAINASRDE--DKKFANSRNYASGSLRNIDVSEVAKRKLNAFFYYIPNAYELGFET 237

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           QY+++Q+++  GF V   ++  +    + +   E+++ ++ L Y IDG V K + F   +
Sbjct: 238 QYQVIQQLKEWGFNVAKEIKLFSNIKELYTSLKELENNKNKLDYRIDGAVIKYNNFKDYE 297

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            +G  ++ P+W I++KFA  Q  T+L DI + +GRTG LT VA+L P+ + G++IT ATL
Sbjct: 298 IIGYTSKFPKWAIAYKFAPTQVQTQLKDIILNVGRTGKLTFVAQLAPIELEGSIITYATL 357

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN +YI  L           DIR+ D V + +A E+IPKV+ + +++R  +A+   F   
Sbjct: 358 HNLEYINDL-----------DIRINDYVYLIKAAEIIPKVIGVNLDKRPNNAKKLEFDYN 406

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C   +V+              C     C  +QL+ L ++ S+   NIEGL +  L  
Sbjct: 407 CPSCHQPLVKKPEE------VDWYCIYDQ-CKQKQLQYLIYYCSKPIMNIEGLSESTLAL 459

Query: 494 FFKSE-----------------------------DPAFSIRIPADIFTLQRRQQTSTTKI 524
           FF ++                             +    +    DI+ L+R ++      
Sbjct: 460 FFNTKVNDVIRECNELITNQNVNEDLSLFKLLDNEEQTFVNSVLDIYQLERYKEIIIKPW 519

Query: 525 ENI----------LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
                          F D S   L +SIN+ +N  L R + +L I+++G   A+S+A  Y
Sbjct: 520 LKKGFSKSSLKYNFRFQDKSFDKLINSINESKNRELYRLLAALNIKYIGIATAKSIANTY 579

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
                                   +R+  +  I A ++  F+ + +N   +E L      
Sbjct: 580 HDIDQLKSLT----------VEDYMRLADISSITANSLFSFFSDEKNWELIEQLKTLSIN 629

Query: 635 SIGRHE---KNVSSEIENKKLVFTGTLQKIQRHKAQEYV-TQLGAVVSAILSRKTDIIIV 690
           +         + SS   +KK V TG+   I R+   + +  +      + +S+  D ++ 
Sbjct: 630 TKDEINNDLVDSSSIYYDKKFVITGSFS-ISRNDIIKKLSLKYKIKFVSGVSKNVDFVLA 688

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLF 716
           G++P   K+ +A+ L + I+ EE +  
Sbjct: 689 GNSPTAKKINQAKVLNIPIIQEEIWNK 715


>gi|219685109|ref|ZP_03539929.1| DNA ligase, NAD-dependent [Borrelia garinii Far04]
 gi|219673205|gb|EED30224.1| DNA ligase, NAD-dependent [Borrelia garinii Far04]
          Length = 660

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 205/713 (28%), Positives = 352/713 (49%), Gaps = 58/713 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +SI + ++E+ +L++ I   D  YY  S P + D  YD    R   +    P+       
Sbjct: 1   MSI-KIQQEIENLKKLIRKWDKEYYVDSLPSVEDFVYDNHILRLKELESKHPEYKTL--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K G ++  +  +V HS+P LSL+K+++++ L+ +I +I        +NS   ++E
Sbjct: 57  DSPTLKFGSDLLNNFEEVEHSVPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y+ G    A  RG+G  G DV+  IR I  IP  L   +   + +RGEV
Sbjct: 111 PKIDGCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHIPLFLDEKV--DLVLRGEV 168

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           YI+K +F  +N  +     KPY + RN ASG+LRR++  ++  +           +E+  
Sbjct: 169 YITKENFFKINKFL----EKPYTSSRNLASGMLRRVDSREVANFPLNIFIYDFLNAELDF 224

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANT---FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           K     + K++ LGF ++  +R  +       +++Y  ++   R++  Y+IDG+V KV +
Sbjct: 225 KTNDLAIAKLKKLGFKIDPLIRFFDQKSSIKEVLNYIADITKQRNSFEYEIDGVVLKVSD 284

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F L+++LG     P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA I
Sbjct: 285 FVLREKLGYTLHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNATLHN+DYI  +            + VGD V V R G+VIP V  +I          F
Sbjct: 345 TNATLHNQDYIISI-----------GLNVGDVVKVSRRGDVIPAVEMVINKCSKG---VF 390

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP C++ +V++          AH      +C +  +ER+K+F S++  +IEG   
Sbjct: 391 KFPDNCPACKTVLVKEG---------AHFFCTNNSCPSVTVERIKYFCSKNCMDIEGFSD 441

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + + F F+ +     I    D++T       +  K+    GF D  V NL +SI   +  
Sbjct: 442 KTISFLFEKK----FISSEIDLYT------FNFYKLLKFKGFKDRKVYNLINSIEASKRK 491

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              + + S+GI+ +G    R L   +L+  N   ++  +    +  + +L+++  +G+ I
Sbjct: 492 PFSKLLLSIGIKELGENAIRLL---FLNNLNSFSKLFRLCQDRDFAFSTLLKIKGIGEKI 548

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  I+E + +   +       + +   +       + +  +  KK   TGT +   R   
Sbjct: 549 ALNIIEAFNDSTMLNKF-KFFENLGFKMEESILIDDDNRLLAGKKFCITGTFKDYSRPII 607

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + +   GA+    ++   D +IVG+  GSKLEKA  L VKIM+ E     L 
Sbjct: 608 IDKLKNKGAIFKTCVTEGLDFLIVGEKAGSKLEKALNLNVKIMSFEDIKSYLD 660


>gi|294660617|ref|NP_853482.2| DNA ligase [Mycoplasma gallisepticum str. R(low)]
 gi|298286803|sp|Q7NAF8|DNLJ_MYCGA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|284812280|gb|AAP57050.2| DNA ligase [Mycoplasma gallisepticum str. R(low)]
 gi|284930979|gb|ADC30918.1| DNA ligase [Mycoplasma gallisepticum str. R(high)]
          Length = 715

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 203/747 (27%), Positives = 344/747 (46%), Gaps = 83/747 (11%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  ++ +  L ++++  +  YY  S P + D  YD   R        +P    S     P
Sbjct: 7   ESIKEIIEDLVKKLTKWEHEYYVLSNPSVSDEVYDNTYRTLLGYERKYPQYVLSY---SP 63

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             ++G  ++    KV H    LSL   +N E+L  F   I +  +++D+    + LEPKI
Sbjct: 64  TQRVGSSISNKFIKVKHDYLMLSLGNCFNFEELLNFNENIAKISKQEDN---PYVLEPKI 120

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I++ Y  G    A  RGDG  GE V A I+ I TIP  ++  I +I  +RGEVY+S
Sbjct: 121 DGLSISLIYLDGVLSEALTRGDGVFGESVIANIKTIKTIPLKINTTIKKI-VIRGEVYVS 179

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKG 253
             DF A+N        K +AN RN ASG LR ++ ++   R LN F + +    E+  + 
Sbjct: 180 NQDFEAINASRDE--DKKFANSRNYASGSLRNIDVSEVAKRKLNAFFYYIPNAYELGFET 237

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
           QY+++Q+++  GF V   ++  +    + +   E+++ ++ L Y IDG V K + F   +
Sbjct: 238 QYQVIQQLKEWGFNVAKEIKLFSNIKELYTSLKELENNKNKLDYRIDGAVIKYNNFKDYE 297

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            +G  ++ P+W I++KFA  Q  T+L DI + +GRTG LT VA+L P+ + G++IT ATL
Sbjct: 298 IIGYTSKFPKWAIAYKFAPTQVQTQLKDIILNVGRTGKLTFVAQLAPIELEGSIITYATL 357

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN +YI  L           DIR+ D V + +A E+IPKV+ + +++R  +A+   F   
Sbjct: 358 HNLEYINDL-----------DIRINDYVYLIKAAEIIPKVIGVNLDKRPNNAKKLEFDYN 406

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C   +V+              C     C  +QL+ L ++ S+   NIEGL +  L  
Sbjct: 407 CPSCHQPLVKKPEE------VDWYCIYDQ-CKQKQLQYLIYYCSKPIMNIEGLSESTLAL 459

Query: 494 FFKSE-----------------------------DPAFSIRIPADIFTLQRRQQTSTTKI 524
           FF ++                             +    +    DI+ L+R ++      
Sbjct: 460 FFNTKVNDVIRECNELITNQNVSEDLSLFKLLDNEEQTFVNSVLDIYQLERYKEIIIKPW 519

Query: 525 ENI----------LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574
                          F + S   L +SIN+ +N  L R + +L I+++G   A+S+A  Y
Sbjct: 520 LKKGFSKSSLKYNFRFQEKSFDKLINSINESKNRELYRLLAALNIKYIGIATAKSIANTY 579

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
                                   +R+  +  I A ++  F+ + +N   +E L      
Sbjct: 580 HDIDQLKNLT----------VEDYMRLADISSITANSLFSFFSDEKNWELIEQLKTLSIN 629

Query: 635 SIGRHE---KNVSSEIENKKLVFTGTLQKIQRHKAQEYV-TQLGAVVSAILSRKTDIIIV 690
           +         + SS   +KK V TG+   I R+   + +  +      + +S+  D ++ 
Sbjct: 630 TKDEINNDLVDSSSIYYDKKFVITGSFS-ISRNDIIKKLSLKYKIKFVSGVSKNVDFVLA 688

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLF 716
           G++P   K+ +A+ L + I+ EE +  
Sbjct: 689 GNSPTAKKINQAKVLNIPIIQEEIWNK 715


>gi|226327977|ref|ZP_03803495.1| hypothetical protein PROPEN_01868 [Proteus penneri ATCC 35198]
 gi|225203681|gb|EEG86035.1| hypothetical protein PROPEN_01868 [Proteus penneri ATCC 35198]
          Length = 505

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 190/509 (37%), Positives = 291/509 (57%), Gaps = 30/509 (5%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++    ++++  L   + +H+  Y+    P I D+EYD L     A+   +P+L  S   
Sbjct: 1   MNKNT-QQKIDKLRVTLRHHEYLYHVMDAPEIPDAEYDRLMNELKALEAEYPELITS--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G     +  +V H IP LSL+  ++      F  R+      K+   I F  E
Sbjct: 57  DSPTQRVGALPLTAFEQVRHEIPMLSLDNAFDETSYLAFDKRLRDRL--KNSEEITFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190
            K+DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L     P  IE+RGE
Sbjct: 115 LKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLRLYGENIPTRIEIRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSE 248
           V++++  F  LN+E    G K +ANPRNAA+G LR+L+P     R L FF +G+G     
Sbjct: 175 VFMNEKGFEYLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGG 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                 Y+ LQ+ +  G PV++ V+       ++ +Y+ ++ IR  L +DIDG+V KVD+
Sbjct: 235 ELPTSHYKRLQQFKKWGLPVSDAVKLCTGSKAVLDFYHHVEEIRPNLGFDIDGVVIKVDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +LQ++LG  +R+PRW I++KF  ++  T + D++ Q+GRTG +TPVARLEPV + G ++
Sbjct: 295 IALQEELGFVSRAPRWAIAYKFQAQEQMTIIKDVEFQVGRTGAITPVARLEPVQVAGVVV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +NATLHN D I+ L            IR+GD V+++RAG+VIP+VV +I  +R  DAQ  
Sbjct: 355 SNATLHNADEIERL-----------GIRIGDTVVIRRAGDVIPQVVSVIEEKRPADAQEI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP+ CPICQS + R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G 
Sbjct: 404 IFPTQCPICQSDIERIEGE------AVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGD 457

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQ 517
           + +D   + E     ++ PAD+F     +
Sbjct: 458 KIIDQLVEKE----YVKTPADLFFRLDEK 482


>gi|78047224|ref|YP_363399.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|123744002|sp|Q3BV14|DNLJ_XANC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78035654|emb|CAJ23345.1| DNA ligase [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 833

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 210/684 (30%), Positives = 341/684 (49%), Gaps = 80/684 (11%)

Query: 12  LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ++      + + +L + I   +  Y+   +P + D++YD L R  +A+  A P+LA    
Sbjct: 1   MTASPDPAQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELA---S 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++G        +V H++P LSL   ++ E++ +F+ RI    + K      F+ 
Sbjct: 58  ADSPTQRVGHLAASRFAEVRHALPMLSLGNAFSEEEVTEFVRRISERLEVK---QPLFSA 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189
           EPK+DG  I++RYE G+FV  A RGDG +GEDVSA +R +  IP  L     P+++EVRG
Sbjct: 115 EPKLDGLAISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248
           EVY+ +  F A N +M A G K  ANPRN A+G LR+L+      R L+FF +G+G+ SE
Sbjct: 175 EVYMPRAAFEAYNAQMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSE 234

Query: 249 -IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               +    +L ++R  GFPV+  V       G+++YY  + + R  L +DIDG+VYK+D
Sbjct: 235 GALPQTHSAILAQLRAWGFPVSALVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLD 294

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q+++G  +R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G +
Sbjct: 295 DLAGQREMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVI 354

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNATLHN D I  L           D+RVGD V+V+RAG+VIP+V  ++ ++R P  Q 
Sbjct: 355 VTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQA 403

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP+C S++VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG
Sbjct: 404 WQMPTQCPVCGSQIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLG 457

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ ++    S      ++  AD++ L   Q      I                  +    
Sbjct: 458 EKFIEVLVDS----GLVKGVADLYLLSVDQLLQLRLISTAESPHAFLREAREHLASGAYA 513

Query: 548 ISLERFI---------------------------FSLGIRHVGAEIARSLAKYYLS---- 576
                 +                           F    + +  + A +L +   +    
Sbjct: 514 QLETSVVGIGVDLAGERDVPQTWQADLLRAGLPRFDWNRKKIATKWAENLIEAIETSRDT 573

Query: 577 ------------------YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
                              +  +    ++    +  W    RVP +G  +A+++  F+  
Sbjct: 574 TLERFLFALGIEHVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQ 633

Query: 619 PRNICAVEALLKEVSPSIGRHEKN 642
             N  A++ LL+        H  +
Sbjct: 634 AGNQQAIDDLLQRGVRIGDTHPPS 657



 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 6/149 (4%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLV-GDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
           Q  A  +++  A       +L +   V   ++A A++++   P N     A  + +   +
Sbjct: 684 QQLAASVDSFAALRTAGADALQQ-AGVPAPVVA-ALLQWLDRPENTALANAAQQAMETVL 741

Query: 637 GRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
            R  +     +  ++ + +V TGTL  + R  A++ +  LGA V+  +S+KT  ++ G+ 
Sbjct: 742 ARLPQADALQTGPLDGQTVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEE 801

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            GSKL+KAQ LGV+I  E + L  L  + 
Sbjct: 802 AGSKLDKAQSLGVEIWGEARLLAFLGDHG 830


>gi|219684330|ref|ZP_03539274.1| DNA ligase, NAD-dependent [Borrelia garinii PBr]
 gi|219672319|gb|EED29372.1| DNA ligase, NAD-dependent [Borrelia garinii PBr]
          Length = 660

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 203/713 (28%), Positives = 351/713 (49%), Gaps = 58/713 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +SI + ++E+  L++ I   D  YY  S P + D  YD    R   +    P+       
Sbjct: 1   MSI-KIQQEIEDLKKLIRKWDKEYYVDSLPSVEDFVYDNHILRLKELESTHPEYKTL--- 56

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K G ++  +  +V HS+P LSL+K+++++ L+ +I +I        +NS   ++E
Sbjct: 57  DSPTLKFGSDLLNNFEEVEHSVPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVE 110

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PKIDG  I + Y+ G    A  RG+G  G DV+  IR I  IP  L   +   + +RGEV
Sbjct: 111 PKIDGCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHIPLFLDEKV--DLVLRGEV 168

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           YI+K +F  +N  +     KPY + RN ASG+LRR++  ++  +           +E+  
Sbjct: 169 YITKENFFKINKFL----EKPYTSSRNLASGMLRRVDSREVASFPLNIFIYDFLNAELEF 224

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANT---FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           K     + K++ LGF ++  +R  +       +++Y  ++   R++  Y+IDG+V KV +
Sbjct: 225 KTNDLAIAKLKKLGFKIDPLIRFFDQKSSIKEVLNYIADITKQRNSFEYEIDGVVLKVSD 284

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F L+++LG     P+W +++KF      +++  I +Q+GR+G +TPVA ++ V + GA I
Sbjct: 285 FVLREKLGYTLHHPKWAMAYKFEALSGFSKVNSIVVQVGRSGKITPVANIDKVFVSGAFI 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           TNATLHN+DYI  +            + VGD V V R G+VIP V  +I          F
Sbjct: 345 TNATLHNQDYIISI-----------GLNVGDVVKVSRRGDVIPAVEMVINKCSKG---VF 390

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            FP  CP C++ +V++          AH      +C +  +ER+K+F S++  +I+G   
Sbjct: 391 KFPDNCPACKTVLVKEG---------AHFFCTNNSCPSVTVERIKYFCSKNCMDIKGFSD 441

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + + F F+ +     I    D++T       +  K+    GF D  V NL +SI   +  
Sbjct: 442 KIISFLFEKK----FISSEIDLYT------FNFYKLLKFKGFKDRKVYNLINSIEASKRK 491

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              + + S+GI+ +G    R L   +L+  N   ++  +    +  + +L+++  +G+ I
Sbjct: 492 PFSKLLLSIGIKELGENAIRLL---FLNNLNSFSKLFRLCQDRDFAFSTLLKIKGIGEKI 548

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKA 666
           A  I+E + +   +       + +   +       + +  +  KK   TGT +   R   
Sbjct: 549 ALNIIEAFNDSTMLNKF-KFFENLGFKMEESILIDDDNRLLAGKKFCITGTFKGYSRPII 607

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + +   GA+    ++   D +IVG+  GSKLEKA  L VKIM+ E     L 
Sbjct: 608 IDKLKNKGAIFKTCVTEGLDFLIVGEKAGSKLEKALNLNVKIMSFEDIKSYLD 660


>gi|325928155|ref|ZP_08189364.1| DNA ligase, NAD-dependent [Xanthomonas perforans 91-118]
 gi|325541451|gb|EGD12984.1| DNA ligase, NAD-dependent [Xanthomonas perforans 91-118]
          Length = 833

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 210/684 (30%), Positives = 341/684 (49%), Gaps = 80/684 (11%)

Query: 12  LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ++      + + +L + I   +  Y+   +P + D++YD L R  +A+  A P+LA    
Sbjct: 1   MTASPDPAQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELA---S 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++G        +V H++P LSL   ++ E++ +F+ RI    + K      F+ 
Sbjct: 58  ADSPTQRVGHLAASRFAEVRHALPMLSLGNAFSDEEVTEFVRRISERLEVK---QPLFSA 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189
           EPK+DG  I++RYE G+FV  A RGDG +GEDVSA +R +  IP  L     P+++EVRG
Sbjct: 115 EPKLDGLAISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248
           EVY+ +  F A N +M A G K  ANPRN A+G LR+L+      R L+FF +G+G+ SE
Sbjct: 175 EVYMPRAAFEAYNAQMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSE 234

Query: 249 -IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               +    +L ++R  GFPV+  V       G+++YY  + + R  L +DIDG+VYK+D
Sbjct: 235 GALPQTHSAILAQLRAWGFPVSALVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLD 294

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q+++G  +R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G +
Sbjct: 295 DLAGQREMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVI 354

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNATLHN D I  L           D+RVGD V+V+RAG+VIP+V  ++ ++R P  Q 
Sbjct: 355 VTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQA 403

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP+C S++VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG
Sbjct: 404 WQMPTQCPVCGSQIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLG 457

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ ++    S      ++  AD++ L   Q      I                  +    
Sbjct: 458 EKFIEVLVDS----GLVKGVADLYLLSVDQLLQLRLISTAESPHAFLREAREHLASGAYA 513

Query: 548 ISLERFI---------------------------FSLGIRHVGAEIARSLAKYYLS---- 576
                 +                           F    + +  + A +L +   +    
Sbjct: 514 QLETSVVGIGVDLAGERDVPQTWQADLLRAGLPRFDWNRKKIATKWAENLIEAIETSRDT 573

Query: 577 ------------------YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
                              +  +    ++    +  W    RVP +G  +A+++  F+  
Sbjct: 574 TLERFLFALGIEHVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQ 633

Query: 619 PRNICAVEALLKEVSPSIGRHEKN 642
             N  A++ LL+        H  +
Sbjct: 634 AGNQQAIDDLLQRGVRIGDTHPPS 657



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 6/149 (4%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLV-GDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
           Q  A  +++  A       +L +   V   ++A A++++   P N     A  + +   +
Sbjct: 684 QQLAAAVDSFAALRTAGADALQQ-AGVPAPVVA-ALLQWLDRPENTALANAAQQAMETVL 741

Query: 637 GRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
            R  +     +  ++ + +V TGTL  + R  A++ +  LGA V+  +S+KT  ++ G+ 
Sbjct: 742 ARLPQADALQTGPLDGQTVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEE 801

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            GSKL+KAQ LGV+I +E + L  L  + 
Sbjct: 802 AGSKLDKAQSLGVEIWDEARLLAFLGDHG 830


>gi|83748812|ref|ZP_00945825.1| NAD-dependent DNA ligase [Ralstonia solanacearum UW551]
 gi|207743250|ref|YP_002259642.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) protein
           [Ralstonia solanacearum IPO1609]
 gi|83724504|gb|EAP71669.1| NAD-dependent DNA ligase [Ralstonia solanacearum UW551]
 gi|206594647|emb|CAQ61574.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) protein
           [Ralstonia solanacearum IPO1609]
          Length = 813

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 223/647 (34%), Positives = 332/647 (51%), Gaps = 61/647 (9%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           + +   YY   +P + D+EYD L R  +A+    P+L     P+ P  ++GG +      
Sbjct: 25  NRYAHEYYVLDQPSVPDAEYDRLYRALEALEAEHPEL---RTPDSPTLRVGGAVLPEFAP 81

Query: 89  VTHSIPTLSLEKIWNI--EDLRKFITRIYRFWQKKD-DNSIFFTLEPKIDGTMITIRYEK 145
           V H +P LS+    +   +    F   + R     + D  I +  E K DG  I +RYE+
Sbjct: 82  VRHVVPMLSIRTETDTTADGALAFDASVRRELGLAESDPPIEYAAELKFDGLAINLRYEQ 141

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLALN 202
           G  V AA RGDG +GEDV+  IR I  IP   R +   +P+++EVRGEVY+ ++DF  LN
Sbjct: 142 GFLVQAATRGDGATGEDVTQNIRTIRQIPLGLRPVDGAVPDVLEVRGEVYMRRDDFERLN 201

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGK--TSEIFAKGQYEMLQ 259
                 G K + NPRN A+G +R+L+P        +FF +GLG+        +    ML 
Sbjct: 202 ARQRERGEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSGMPETHSGMLD 261

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +  LGFPV+          G+V ++  + + R +LP+DIDG+VYKV+  +LQ++LG R 
Sbjct: 262 ALVALGFPVSKERAAVMGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNALALQRELGFRT 321

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           R PRW ++HK+  ++A T +  I +Q+GRTG +TPVARL PV +GG  +TNATLHNED +
Sbjct: 322 REPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEV 381

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER---------------HPD 424
           +            +D+RVGD V+V+RAG+VIP+VV +++  R                P 
Sbjct: 382 RR-----------KDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNPAQQPK 430

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
             PF  P  CP+C S VVR+         A  RC+GGL CSAQ+ E ++HF  R   +IE
Sbjct: 431 YPPFELPKSCPVCGSHVVREEGE------AVARCSGGLFCSAQRKEAIRHFAGRRMMDIE 484

Query: 485 GLGKQQLDFFFKSEDPAF---SIRIPADIFTLQRRQQTSTTKIENILG----FGDVSVTN 537
           GLG++ +D   + E         R+  D F   +R+      +                N
Sbjct: 485 GLGERYIDNLVELEYVHGIADLYRLTLDAFLEMKRRADERDGVTPETVAAGKIATKWAEN 544

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L   I   +   L RF+F+LGIRHVG   A++LA +  S     +    +          
Sbjct: 545 LLAGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAVIRRAPAPL---------- 594

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
           L+ +P VG  +A+AI +F+  P+N  A++ALL       G H  +  
Sbjct: 595 LLTLPDVGATVAEAIADFFDEPKNQQALDALLAAGVAPQGEHPPSAK 641



 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 17/166 (10%)

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG+  + A  ++ LA    +                 D   L  +P     ++ +++++ 
Sbjct: 655 LGVPKLTATRSKQLATLVPTLAQLTTA----------DAAQLEGLP---AEVSASLLDWL 701

Query: 617 QNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +   +      ++AL  E+  ++   E      +  K +V TGTL  + R  A+  +   
Sbjct: 702 EADGHRARLAQLDALRAELLAAMPA-ETAEEGALSGKTVVLTGTLPNLTRDAAKAMLEAA 760

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           GA VS  +S+KTD ++ G+  GSKL KA++LGVK+++E   L LLQ
Sbjct: 761 GAKVSGSVSKKTDYVVAGEEAGSKLAKAEELGVKVLDEAGMLALLQ 806


>gi|187918415|ref|YP_001883978.1| NAD-dependent DNA ligase LigA [Borrelia hermsii DAH]
 gi|254781263|sp|B2S0Q2|DNLJ_BORHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119861263|gb|AAX17058.1| NAD-dependent DNA ligase [Borrelia hermsii DAH]
          Length = 669

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 197/713 (27%), Positives = 345/713 (48%), Gaps = 56/713 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           IE    E+  L+  I   +  YY  S P + D  YD    R   +   +P+       + 
Sbjct: 2   IEDVEDEILRLKNIIKRWNREYYVDSSPSVGDLTYDKALLRLQDLESKYPEYKTL---DS 58

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  + G ++     +V HS P LSL+K ++I+ L  +I ++         ++   ++EPK
Sbjct: 59  PTFRFGSDLLNDFEEVKHSFPILSLDKTYDIKGLSLWIEKMVLESAISGLHTG-ISVEPK 117

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  I + Y+ G    A  RGDG  G DV+  ++ I  +P  +   I   + +RGE+YI
Sbjct: 118 IDGCSIVLHYKDGILEKALTRGDGRVGNDVTENVKTIRNVPLRIDEKIE--LVLRGEIYI 175

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
           +K +FL +N  +    + PY N RN ASGILRR++  ++  +           S +    
Sbjct: 176 TKENFLKINRTL----KNPYVNARNLASGILRRISSKEVANFPLDIFVYDILYSSLKLNT 231

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
            ++   K++  GF VN         +   GI+++  +++++R +  Y+IDG+V K+D F 
Sbjct: 232 SHDAFDKLKQFGFKVNPFCEFFGGKNLEAGIIAHVKKIEALRDSFEYEIDGVVLKIDSFI 291

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           L+K LG  +  P+W I++KF      ++++DI +Q+GR+G +TPVA +E V + GA ITN
Sbjct: 292 LRKILGSTSHHPKWSIAYKFESCTGMSKVVDIVVQVGRSGKITPVAHVEKVLVAGASITN 351

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+LHN+DYI  +            + VGD V++ R G+VIP V  +I          F  
Sbjct: 352 ASLHNQDYIDFV-----------GLNVGDIVVISRRGDVIPAVDLVIEKLAVGS---FKI 397

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           PS CP C+  ++++          AH       CS + +E++K+F S+   NI GL ++ 
Sbjct: 398 PSNCPSCKMTLIKEG---------AHLFCVNRHCSCRIIEQVKYFCSKKCMNIVGLSEKT 448

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++F F+ +     I    +++T       +  ++ N+ GF    + NL  SI   ++   
Sbjct: 449 IEFLFEKK----FISSEVELYT------FNCDRLINLKGFNLKRINNLKRSIEDSKSRPF 498

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + +  +GI+ +G      L     +  N    I+ +  +       L+++  +G+ IA 
Sbjct: 499 RKLLLGMGIKDLGENTILVLIN---NNLNSFDTISTLCKNKEAALAKLLKIKGIGERIAL 555

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKAQ 667
            I+E + +   +       KE+   +     N     S +  KK   TG+ +   R    
Sbjct: 556 NIIEAFNDKTILDKF-NFFKELGLKMEEDNTNDAVYDSFLFGKKFCITGSFKGYSRDVLI 614

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI---MNEEQFLFL 717
           E +T+ GAV S  +++  D ++VG+  G K++KA  LG+K     + + F+ L
Sbjct: 615 EKLTKKGAVFSRSVTKCLDFLLVGEKFGLKVQKANNLGIKTFSLFDIKDFVDL 667


>gi|297196402|ref|ZP_06913800.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197720877|gb|EDY64785.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 715

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 199/734 (27%), Positives = 323/734 (44%), Gaps = 95/734 (12%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI-GGEMNLSLFK 88
                YY+  +  + D  YD L R   A     PD      P  P  K+ GG +      
Sbjct: 30  RASAAYYETGESTLDDDAYDRLVRGIAAYEQEHPD---ETSPASPTGKVAGGAVVAG--D 84

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H++P LSL+ +++ E L  +   + R      +    +++EPK+DG  +  RYE+G  
Sbjct: 85  VPHTVPMLSLDNVFSAEQLVAWTASVERRTGPPVE---EWSVEPKLDGLAVAARYEEGAL 141

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
                RGDG +GEDVS  I  I  +PR L+  +   +E+RGEV +++  F   N   +  
Sbjct: 142 TRLITRGDGTAGEDVSHAIGTIVGLPRTLAEPV--TLEIRGEVLMTEEQFERANTVRVEH 199

Query: 209 GRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT-------SEIFAKGQYEMLQKM 261
           G  P+ANPRN A+G LR  +         F    L            +   G   +++ +
Sbjct: 200 GGAPFANPRNGAAGTLRAKDRAYTVEMTFFGYGALAVPASGEELTGRLGEWGHGRIMRYV 259

Query: 262 RCLGFPVNNGV----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
             LG    +      R   T   I +  +E+ + R  LP+ IDG+V K D  + Q   G 
Sbjct: 260 ADLGVHTADSTAVAPRVLTTTEAIQARIDEIAAARPGLPFGIDGIVIKADSAADQAAAGF 319

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +R+PRW +++K    +  T LL ++  +GRTGI+ P A LEPV I G+ +T ATLHN  
Sbjct: 320 GSRAPRWAVAYKLPAVEKVTTLLGVEWNVGRTGIIAPRAVLEPVEIDGSTVTYATLHNPA 379

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I             RD+R GD+V+V +AG++IP+V   + + R    QP  FP  CP C
Sbjct: 380 DITR-----------RDLRTGDKVMVYKAGDIIPRVEAPVAHLRTGAEQPVVFPEVCPQC 428

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +               RC  G  C    +  + +   RD  +IEGLG  ++      
Sbjct: 429 GSEIDTSEQ--------RWRCVRGRDC--HVVASVSYAAGRDQLDIEGLGVTRVVQLVD- 477

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +R  AD+FTL R Q         +   G+ S  NL  +I+  R   L R   +L
Sbjct: 478 ---AGLVRDLADLFTLTREQLLG------LERMGETSTDNLLAAIDTARTRPLSRVFCAL 528

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           G+R  G  ++R +A+Y+ + ++              D  +L +V  +G   A+ +V   +
Sbjct: 529 GVRGTGRSMSRRIARYFAAMEHIRAA----------DAETLQQVDGIGVEKARTVVA--E 576

Query: 618 NPRNICAVEALLKEVSPSIGRHEKN--------------------------VSSEIENKK 651
                  ++ L+                                        +  +    
Sbjct: 577 LEELAPLIDRLVAAGVNMTEPGATPPAARAEDGAGAEGEGQDTGAGASTAGGAGPLSGMT 636

Query: 652 LVFTGT----LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
           +V TG     L+K+ R++  E + + G   S+ +S++T +++ G+N GSK +KA+QLG +
Sbjct: 637 VVVTGAMTGALEKLSRNQMNELIERAGGKSSSSVSKRTSLLVAGENAGSKRDKAEQLGTR 696

Query: 708 IMNEEQFLFLLQQY 721
           I   ++F  ++  +
Sbjct: 697 IATPDEFAAIVADF 710


>gi|21242377|ref|NP_641959.1| NAD-dependent DNA ligase LigA [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|81803317|sp|Q8PM07|DNLJ_XANAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|21107814|gb|AAM36495.1| DNA ligase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 833

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 208/672 (30%), Positives = 334/672 (49%), Gaps = 80/672 (11%)

Query: 12  LSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           ++      + + +L + I   +  Y+   +P + D++YD L R  +A+  A P+LA    
Sbjct: 1   MTASPDPAQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELA---S 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++G        +V H++P LSL   ++ E++ +F+ RI       +     F+ 
Sbjct: 58  ADSPTQRVGHLAASRFAEVRHAMPMLSLGNAFSDEEVTEFVRRISERL---EVRQPLFSA 114

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189
           EPK+DG  I++RYE G+FV  A RGDG +GEDVSA +R +  IP  L     P ++EVRG
Sbjct: 115 EPKLDGLAISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPRVLEVRG 174

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248
           EVY+ +  F A N +M A G K  ANPRN A+G LR+L+      R L+FF +G+G+ SE
Sbjct: 175 EVYMPRAAFEAYNAQMRAQGGKILANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSE 234

Query: 249 -IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               +    +L ++R  GFPV+  V       G+++YY  +   R  L +DIDG+VYK+D
Sbjct: 235 GALPQAHSAILAQLRAWGFPVSALVEVVQGSDGLLAYYQRIGEARDGLAFDIDGVVYKLD 294

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q+++G  +R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G +
Sbjct: 295 DLAGQREMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVI 354

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +TNATLHN D I  L           D+RVGD V+V+RAG+VIP+V  ++ ++R P  Q 
Sbjct: 355 VTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQA 403

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           +  P+ CP+C S +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG
Sbjct: 404 WQMPTQCPVCGSEIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLG 457

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           ++ ++    S      ++  AD++ L   Q      I                  +    
Sbjct: 458 EKFIEVLVDS----GLVKGVADLYLLSVDQLLQLRLISTADSPHAFLREAREHLASGAYA 513

Query: 548 ISLERFI---------------------------FSLGIRHVGAEIARSLAKYYL----- 575
                 +                           F    + +  + A +L +        
Sbjct: 514 QLEASVVGIGVDLAGERDVPQTWQADLLRAGLPSFDWNRKKIATKWAENLIEAIEISRDT 573

Query: 576 -----------------SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
                            + +  +    ++    +  W    RVP +G  +A+++  F+  
Sbjct: 574 TLERFLFALGIEHVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQ 633

Query: 619 PRNICAVEALLK 630
             N  A++ LL 
Sbjct: 634 AGNQKAIDHLLA 645



 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
              +  L I  V    A  +A  + S           +               V   +A+
Sbjct: 667 ANLLEDLEIPKVTPIRAAQIATAFGSIDALRNGGPEPLVEA-----------GVPQSVAE 715

Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           ++  +   P N       +  L E+   +    +  +  ++ + +V TGTL  + R  A+
Sbjct: 716 SLAAWLLVPANDTLAVNAQRKLSELLAMLPEAGEEKTGPLDGQTVVITGTLAALTRDAAK 775

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + L  L  + 
Sbjct: 776 QRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGDHG 830


>gi|85702769|ref|ZP_01033873.1| DNA ligase, NAD-dependent [Roseovarius sp. 217]
 gi|85671697|gb|EAQ26554.1| DNA ligase, NAD-dependent [Roseovarius sp. 217]
          Length = 866

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 270/677 (39%), Positives = 386/677 (57%), Gaps = 40/677 (5%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+ ++AR EL+ L   ++  +  Y+    P I D+ YDALK R  AI    P L 
Sbjct: 5   IAVEDLTEDEARTELARLAALLAEANRAYHTEDAPEITDAAYDALKARNAAIEARLPALK 64

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           R+   +   +++G   +    KVTH I  LSL   +   D+ +F TRI R+    DD  +
Sbjct: 65  RA---DSASDQVGAAPSDGFAKVTHRIRMLSLGNAFEAGDVAEFDTRIRRYLGLADDAPL 121

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            +T EPKIDG  +++RYE+G+ V AA RGDG  GE+V+A    I  IP  L+   PE++E
Sbjct: 122 AYTAEPKIDGLSLSLRYEQGRLVQAATRGDGEVGENVTANAHTIADIPETLTGA-PEVLE 180

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           VRGEVY+S  DF ALN    A   K +ANPRNAA+G LR+L+      R L FF +  G+
Sbjct: 181 VRGEVYMSHADFAALNARQAAKSDKSFANPRNAAAGSLRQLDATITAARPLRFFAYSWGE 240

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            S   A  Q   + ++  LGF  N      +    +++ Y  ++  R+TL YDIDG+VYK
Sbjct: 241 LSAPLADTQMGAIDRLAALGFQTNPLTVLCDGTEALLAQYARIEQARATLGYDIDGVVYK 300

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+  LQ +LG R+ +PRW I+HKF  + A TRL  IDIQ+GRTG L+PVARL PV +GG
Sbjct: 301 VDDLGLQARLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGG 360

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGG-----RDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
            +++NATLHNEDYI G D+ G V+R       +DIRVGD V V RAG+VIPK+ D+ + +
Sbjct: 361 VVVSNATLHNEDYIAGRDSKGAVIRPDENGNAKDIRVGDWVQVYRAGDVIPKIADVDLTK 420

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  +A PF FP+ CP C S  VR+         A  RC GGL C AQ +E+LKHFVSR A
Sbjct: 421 RPENAAPFIFPTTCPECGSDAVREEG------DAVRRCMGGLICPAQAVEKLKHFVSRAA 474

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           F+IEGLG +Q++ F+   D    I+ PADIFTL+ R   + TK+ N  G+G+ SV  L++
Sbjct: 475 FDIEGLGAKQIEMFYN--DDQLPIKQPADIFTLKERDGKNLTKLANREGWGEKSVAKLFE 532

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND-DWLSLI 599
           +I  RR++ L RFIF+LGI +VGAE+++ LA ++ S+    Q  +++             
Sbjct: 533 AIEARRSVELPRFIFALGIPNVGAEVSKDLANFHGSWTALVQANDDVKNQRIQTAIEHWS 592

Query: 600 RVPLVGD--------IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651
           R+  + +         +A  + EF      +   + L      +      N+  +   K 
Sbjct: 593 RIN-ISNDTNWLEVVEVANELREF-----ELSFWDRLYAYKGVAGVGLLANL-RKFLGK- 644

Query: 652 LVFTGTLQKIQRHKAQE 668
                +L K+   +A +
Sbjct: 645 -----SLTKVSDEQATK 656



 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 79/149 (53%)

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
             Y  +   ++ +   I  +      L+ +   G +   +I+ F+ N  N+ AV ++LK 
Sbjct: 717 DNYGGWSASSKNLEEFIEKDAQICAQLLPLVGHGQVTVDSIIRFFGNNNNVAAVNSILKY 776

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           V P     +    S I  K +VFTGTL+K+ R +A+     LGA V+  +S KTD++I G
Sbjct: 777 VDPKEFEKQAITDSSIYGKTVVFTGTLEKMTRAEAKARAEGLGAKVAGSVSAKTDLLIAG 836

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
              GSK +KA +LG++ ++E+ +L L+  
Sbjct: 837 PGAGSKAKKAAELGIETIDEDGWLALIGD 865


>gi|253578000|ref|ZP_04855272.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850318|gb|EES78276.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 614

 Score =  369 bits (947), Expect = e-99,   Method: Composition-based stats.
 Identities = 169/672 (25%), Positives = 295/672 (43%), Gaps = 66/672 (9%)

Query: 51  LKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKF 110
           +     A+         +   N P   +G E    L K  H  P LSL+K  + E LR+F
Sbjct: 1   MYDELQALEKE----TGTVLANSPTVSVGYEAVDQLPKEEHESPMLSLDKTKDREVLREF 56

Query: 111 ITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI 170
           I                  L  K+DG  I + YE G    A  RG+G +GE V+   R  
Sbjct: 57  I------------GEHKTLLSWKLDGLTIVLTYENGGLAKAVTRGNGVTGEVVTNNARVF 104

Query: 171 PTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230
             +P  L +     + +RGE  I+ +DF  +N+ +  V    Y NPRN  SG +R+LN  
Sbjct: 105 KNVP--LKIPYQGRLVLRGEAIITYSDFERINESIEDVD-AKYKNPRNLCSGSVRQLNNE 161

Query: 231 -DITRYLNFFVHGLGKTSEIFAKGQY-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM 288
               R + F+   L     +          + ++  GF V        +           
Sbjct: 162 ITARRNVRFYAFTLVSADGVDFHNSRARQFEWLKEQGFDVVEYRTVTASTLD--EAMEYF 219

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
            +  +   +  DGLV   D+ +    LG  A+ PR   + K+A++   T LL+I+    R
Sbjct: 220 STAITENDFPSDGLVALYDDIAYGDSLGRTAKFPRNAFAFKWADEIRETHLLEIEWSPSR 279

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG++ PVA  EPV + G  ++ A++HN   +K L            + +GD + V +A  
Sbjct: 280 TGLINPVAVFEPVELEGTTVSRASVHNVSILKELQ-----------LGIGDTITVYKANM 328

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           +IP++ + +       +     P  CP C                          C+A++
Sbjct: 329 IIPQIAENLTR-----SSKLEIPDTCPACGHGTQIQ-----KVNDVEALYCTNPDCAAKK 378

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
           ++    F SRDA NI+GL +  L+ F         I    DIF + + +     +I  + 
Sbjct: 379 IKSFALFASRDAMNIDGLSEATLEKFIAR----GFIHDFGDIFEIGKHRD----EIVEMD 430

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
           GFG+ S  NL  S++K +  +L + I+SLGI ++G   A+ + +++          +++ 
Sbjct: 431 GFGEKSFENLMTSLDKAKETTLAKVIYSLGIANIGLANAKVICRHFD---------DDLE 481

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
              + D   +  +  +G +IA ++ +++ N  N   ++ L+  ++    + EK       
Sbjct: 482 KIRHADKEEISSIDTIGPVIAGSLTDYFSNEDNNRKLDHLMSHLTVK--KEEKTGEQIFR 539

Query: 649 NKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLG 705
           N   V TG+++    R +A+E++  LG  V+  ++ KT+ +I  D  +  SK +KA++LG
Sbjct: 540 NMNFVITGSVEHFANRAQAKEFIESLGGKVTGSVTSKTNYLINNDTTSNSSKNKKAKELG 599

Query: 706 VKIMNEEQFLFL 717
           + I++EE FL +
Sbjct: 600 IPILSEEDFLKM 611


>gi|15828860|ref|NP_326220.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Mycoplasma
           pulmonis UAB CTIP]
 gi|81532955|sp|Q98QH2|DNLJ_MYCPU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|14089803|emb|CAC13562.1| DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+]) [Mycoplasma
           pulmonis]
          Length = 679

 Score =  369 bits (947), Expect = e-99,   Method: Composition-based stats.
 Identities = 204/707 (28%), Positives = 358/707 (50%), Gaps = 51/707 (7%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD----LARSEDPNGPLNKI 78
            L +++  ++  YY  ++ ++ D  YDA     + I   FP+    + + +     L K+
Sbjct: 14  ELNEKLKLYNHHYYNKNESLVSDEYYDAKLLELENIRDNFPEEYNQVFQKDFSKSVLEKV 73

Query: 79  GG--EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
               E ++ L K  H    LSL K ++ EDL ++  RI  F      N+  + L+ KIDG
Sbjct: 74  NHLDEQDVKLKKEKHQKLMLSLNKAYSFEDLERYTNRINTFVG----NNHQYILQEKIDG 129

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YE G    A  RGDG  GE+V+     I  IP   ++NI E IE+RGE++ S  
Sbjct: 130 VSISLYYENGILTKALTRGDGIYGENVTHNALNIKDIP--KTINIKENIELRGEIFFSLK 187

Query: 197 DFL----ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
            F        D+      K +  PRN ASGIL+ L  TD + +L+ F++ +        K
Sbjct: 188 LFESLKNEFLDKQDGTKNKKWNTPRNKASGILKSLKTTDESSWLSCFIYEVVSPENFNLK 247

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q ++   ++  GF            + I ++    K       Y+IDGLV K+++ SL 
Sbjct: 248 TQKQLFDFLKIQGF-NLPKFEFIENENLIENFITNFKFEDDQRDYEIDGLVIKLNDLSLY 306

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
             LG+ ++     I++KF +K   T++ DI + +GRTG++T  A+L+ V + G+ I  AT
Sbjct: 307 DLLGKTSKFFHHSIAYKFRKKFVMTKIEDIFVTVGRTGLITYNAKLQEVVLNGSKIKAAT 366

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN +YIK +            I +GD+V +++AGE+IP+VV ++  +   D   FS   
Sbjct: 367 LHNYEYIKNI-----------KINIGDKVYIEKAGEIIPRVVKLVSPK--NDQNYFSPIE 413

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
           FCP C++++    N         ++      C  +++++LK+FVS+D   I+ LG ++++
Sbjct: 414 FCPSCKNKLSWSEN-------MLNQFCLNPDCIEKKIQKLKYFVSKDGMEIQELGGKKIE 466

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
            FF        ++   DI+ L+     +   +  +  F + SV  L   I + +++   +
Sbjct: 467 LFFAK----GWVKKIEDIYNLK----NNYDDLLKLENFQEHSVNVLLHKIEESKDVYTWK 518

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            I +LGI+++G ++A+SL K       F  +  N+++    ++  L +    G +  +++
Sbjct: 519 LIAALGIKNIGKKLAKSLVKII-----FENDQKNLLSLLEFNYDELEKYDEFGSVKIESL 573

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
            EF+ N  N   ++ L +         E   S+++ENK  + TGTL+K  R   +  + Q
Sbjct: 574 KEFFANDENRNLIQFLDQNGFELKMEKEIIQSTKLENKTFLITGTLEK-PRDFYKNLIIQ 632

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            G ++S+ +S+K D +IVG NPGSK +KA +L +KI++EE    +L+
Sbjct: 633 NGGIISSSISKKLDYLIVGQNPGSKEKKAMELNIKIIDEEFLKKMLE 679


>gi|308375959|ref|ZP_07668156.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu007]
 gi|308344705|gb|EFP33556.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu007]
          Length = 614

 Score =  369 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 186/604 (30%), Positives = 291/604 (48%), Gaps = 43/604 (7%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    +  +  ++  +L +E+  H   YY    PII D+E+D L RR +A+    P+L  
Sbjct: 4   PDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL-- 61

Query: 68  SEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              P+ P   +GG         V H    LSL+  +  ++L  +  RI+           
Sbjct: 62  -RTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH--- 117

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIP 182
            +  E KIDG  +++ Y +G+   A+ RGDG +GEDV+   R I  +P  L       +P
Sbjct: 118 -YLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVP 176

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
           E++EVRGEV+   +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    H
Sbjct: 177 EVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICH 236

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           GLG          ++    +R  G PV+     A    G+    +     R  + ++IDG
Sbjct: 237 GLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVDE +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV
Sbjct: 297 VVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPV 356

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G+ +  ATLHN   IK            + + +GD V++++AG+VIP+V+  +V  R
Sbjct: 357 KVAGSTVGQATLHNASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELR 405

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
               + F  P+ CP C S +  +      +  A  RC     C  Q  ER+ H  SR+  
Sbjct: 406 DGSEREFIMPTTCPECGSPLAPE-----KEGDADIRCPNARGCPGQLRERVFHVASRNGL 460

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IE LG +      +++     I    ++F L  R    T       G    +   L  +
Sbjct: 461 DIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVN 516

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           ++K +   L R + +L IRHVG   AR+LA  + S    A                L  V
Sbjct: 517 LDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAA----------STDQLAAV 566

Query: 602 PLVG 605
             VG
Sbjct: 567 EGVG 570


>gi|58426627|gb|AAW75664.1| DNA ligase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 961

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 221/684 (32%), Positives = 337/684 (49%), Gaps = 90/684 (13%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +E +  +   +    L + I   D  YY  + P I D++YD L R    +   +P+L  +
Sbjct: 118 VETM-EQGVIERARELRRRIENADHRYYDLADPEITDAQYDQLFRELQELEQKYPELVTA 176

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + P  ++GG +  S  KV HSIP LSL   ++  +++ F+ RI+R       N + F
Sbjct: 177 ---DSPSMRVGGAVRKSFVKVRHSIPMLSLANAFDEVEVKNFVDRIFRRMGS--SNPLEF 231

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEV 187
           ++EPK DG  I++RYE GKFV    RGDG  GEDVS  IR I ++P  L  N  P I+EV
Sbjct: 232 SVEPKFDGLAISLRYELGKFVQGVTRGDGDVGEDVSENIRTIRSVPLKLKGNNVPAILEV 291

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG-- 244
           RGEVY+ ++ F   N   +A G K  ANPRN A+G LR+L+      R L+FF +G+G  
Sbjct: 292 RGEVYMPRDGFSEFNKRAMARGEKLLANPRNGAAGSLRQLDSRISAQRPLSFFAYGVGLI 351

Query: 245 --------KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
                   +  +  A     ML ++R  GFPV++ V       G+++YY  +   R  LP
Sbjct: 352 QVEQDLFEEIPQSIASTHSAMLAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLP 411

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           +DIDG+VYK+D+ + Q+++G  +R+PRW ++HKF  ++ ST +  I+IQIGRTG  TPVA
Sbjct: 412 FDIDGVVYKLDDLAGQREMGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVA 471

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
           RL+PV++ G ++TNATLHN D I  L           D+RVGD V+V+RAG+VIP+V  +
Sbjct: 472 RLKPVHVAGVIVTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAV 520

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           + ++R P  Q +  P+ CP+C S +VR+         A  RC+G L C AQ+ E  +HFV
Sbjct: 521 VADQRPPATQSWQMPTQCPVCGSEIVREEG------QAVWRCSGELTCPAQRKEAFRHFV 574

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
           SR A +++GLG++ ++    S      ++  AD++ L   Q      I            
Sbjct: 575 SRRAMDVDGLGEKFIEVLVDS----GVVQGVADLYLLTVDQLLQLRMISTAESPHAFLRE 630

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAE------IARSLAKYYLSYQ------------ 578
                 +      LE  +  +G+   G         A  L     ++             
Sbjct: 631 AREHLASGAYAQ-LEATLVGIGVDLAGEREVPQTWQADLLRAGLPTFDWNRKKIATKWAE 689

Query: 579 NFAQEINNIIAHNND--------------------------------DWLSLIRVPLVGD 606
           N  + I        +                                 W    RVP +G 
Sbjct: 690 NLIEAIETSRDTTLERFLFALGIEHVGESTAKALSAWFGDLDLIRHLPWPLFKRVPDIGG 749

Query: 607 IIAQAIVEFYQNPRNICAVEALLK 630
            +A+++  F+  P N  A++ LL 
Sbjct: 750 EVARSLGHFFDQPGNQKAIDHLLA 773



 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
              +  L I  V    A  +A  + S           +               V   +A+
Sbjct: 795 ANLLEDLEIPKVTPIRAAQIATAFGSIDALRNGGPEPLVEA-----------GVPQSVAE 843

Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           ++  +   P N       +  L  +   +    +  +  ++ + +V TGTL  + R  A+
Sbjct: 844 SLATWLLVPANDTLAVKAQKKLSALLAMMPEAGEEKTGPLDGQTVVITGTLAALTRDAAK 903

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + L  L ++ 
Sbjct: 904 QRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGEHG 958


>gi|167465474|ref|ZP_02330563.1| DNA ligase, NAD-dependent [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 579

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 178/622 (28%), Positives = 295/622 (47%), Gaps = 58/622 (9%)

Query: 112 TRIYRFWQKKDD-------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS 164
            R+ +     +            F +E K DG  I + Y++G  V A+ RG+G  GE + 
Sbjct: 1   NRVQKLVNDYNSKNPSTPLPEPSFAVELKFDGLTINLTYDQGNLVQASTRGNGVVGEGIL 60

Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224
           A ++ I ++P  +      +IEV+GE  +  +     N        +P  N RNAA+G L
Sbjct: 61  AQVKTIKSVPLEIPYK-EGLIEVQGEGMMLLSVLDQYNQTA----AEPLKNARNAAAGAL 115

Query: 225 RRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVS 283
           R LNP     R L  F + +G +         EM+  ++   F VN  V+  NT   +  
Sbjct: 116 RNLNPKVTAERRLTAFFYNVGFSDRKQFMNHQEMIAFLKENHFKVNPYVKYFNTIDEVFE 175

Query: 284 YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDID 343
              +++  R    + IDG V KV +   ++ LG   + PRW I++KF  ++ +T L  + 
Sbjct: 176 EMKKLEQERHDFDFLIDGAVIKVTDIRTREVLGYTEKFPRWAIAYKFEAEEVTTVLEGVS 235

Query: 344 IQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLV 403
            ++GRTG +TPVA++EPV + G  + N TL+N   I+  +             +G  V +
Sbjct: 236 WEVGRTGKITPVAKVEPVELAGVTVQNCTLNNIGDIERKNLKHA---------LGSLVYI 286

Query: 404 KRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463
           +R+ +VIP+++  +  E   +     +P  CP C + + +          A   C   L 
Sbjct: 287 RRSNDVIPEILGKVTEEIDGEE--IKYPEHCPACGTELEQR--------GAHLFCPNRLG 336

Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK 523
           C  Q + R+ HF SRDA +IE       +  ++  D    +R PAD++ L          
Sbjct: 337 CKPQLIGRITHFASRDAMDIETFSVMTAEQLYQQLD----VRDPADLYDLTYDDII---- 388

Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
              +  FG+    NL D+I K +   L  F+F+LGI + G    + LA+++ S       
Sbjct: 389 --QLPRFGEKKANNLLDAIEKSKERDLSSFLFALGIPNTGKTTTKVLAEHFRSLDKVMDA 446

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP-----SIGR 638
           +             LI +P VG I+A +I  F+++P  I ++  + K           G+
Sbjct: 447 V----------VEELIALPDVGGIVADSIYTFFRDPIMIESIRRMKKAGVQAQMEAEEGK 496

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
            E +       K +V TGTL  + R +A + +  LGA V+  +S+KTDI+I G+N GSKL
Sbjct: 497 AEIDPGHPFYGKTIVLTGTLSSMSRDEAAKKLESLGAKVTGSVSKKTDIVIAGENAGSKL 556

Query: 699 EKAQQLGVKIMN-EEQFLFLLQ 719
            KA+QLG+++++ E++ L LL 
Sbjct: 557 AKAEQLGIRVIDNEDELLHLLD 578


>gi|47169437|pdb|1V9P|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase
 gi|47169438|pdb|1V9P|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase
          Length = 584

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 207/630 (32%), Positives = 328/630 (52%), Gaps = 49/630 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ E+AR+ ++ L   I YH+  YY  + P I D+EYD L R    +   FP+      P
Sbjct: 1   MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFK---SP 57

Query: 72  NGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G      +   V H     SL+  +  E++  F  R+ R   +K      +T+
Sbjct: 58  DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLERALGRK--RPFLYTV 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  V+ A RGDG  GE+V+  +  IPTIPR L    P+ +EVRGE
Sbjct: 116 EHKVDGLSVNLYYEEGVLVFGATRGDGEVGEEVTQNLLTIPTIPRRLKGV-PDRLEVRGE 174

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+    FL LN+E+   G K + NPRNAA+G LR+ +P     R L    + LG   E 
Sbjct: 175 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLEE 234

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K QYE+L  ++  GFPV +G  +A    G+   Y    + R  LP++ DG+V K+D+
Sbjct: 235 SGLKSQYELLLWLKEKGFPVEHGYEKALGAEGVEEVYRRFLAQRHALPFEADGVVVKLDD 294

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +L ++LG  AR+PR+ +++KF  ++  TRLLD+  Q+GRTG +TPV  LEPV I G+ +
Sbjct: 295 LALWRELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGSEV 354

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++   R  + +P 
Sbjct: 355 SRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGEERPI 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P  CP C  R+V++           HRC   L C A++ E ++H+ SR A +IEGLG+
Sbjct: 404 RWPETCPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIEGLGE 454

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   +       +R  AD++ L++           +   G+ S  NL   I + ++ 
Sbjct: 455 KLIERLLEK----GLVRDVADLYHLRKEDLLG------LERMGEKSAQNLLRQIEESKHR 504

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            LER +++LG+  VG  +AR+LA+ + +     +     +    +               
Sbjct: 505 GLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELLEVEEVGEL----------T 554

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR 638
           A+AI+E  ++P     V  L +       +
Sbjct: 555 ARAILETLKDPAFRDLVRRLKEAGVSMESK 584


>gi|320007473|gb|ADW02323.1| DNA ligase, NAD-dependent [Streptomyces flavogriseus ATCC 33331]
          Length = 698

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 194/714 (27%), Positives = 312/714 (43%), Gaps = 84/714 (11%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
            +  + D  YD L R   A     P          P  K+ G        V H++P LSL
Sbjct: 33  GESTLDDDAYDRLVRAIAAYEEEHPQEVLDA---SPTGKVAGGAVSG--DVPHTVPMLSL 87

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E    +   + R   +       +++EPK+DG  +  RY +G       RGDG 
Sbjct: 88  DNVFSAEQFVTWTASVERRIGRPV---AAWSVEPKLDGLAVAARYRQGVLEQLITRGDGT 144

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDVS  I  +  +P    L  P  +E+RGE+ ++   F A N      G  P+ANPRN
Sbjct: 145 AGEDVSHAIGTVLGLP--ERLGAPATLEIRGEILMTTEQFEAANAVRTEHGAAPFANPRN 202

Query: 219 AASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK------GQYEMLQKMRCLGFPVNNGV 272
            A+G LR  +         F    L                  E+L+ +  +G       
Sbjct: 203 GAAGTLRAKDRPYRVEMTFFAYGALALPDSGELTDTLAGLPHSEVLEYVAGIGVHTAADT 262

Query: 273 ----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
               R   T   + +   ++ ++R++LP+ IDG+V K D  + Q+  G   R+PRW I++
Sbjct: 263 AVAPRTVTTVEEVQAGVEDIAALRASLPFGIDGIVIKADLAADQRDAGSGTRAPRWAIAY 322

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           K    +  TRLL ++  +GRTGI+ P A LEPV I G+ ++ ATLHN   I         
Sbjct: 323 KLPAVEKVTRLLGVEWNVGRTGIIAPRAVLEPVEIDGSTVSYATLHNPADITR------- 375

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
               RD+R+GD V+V +AG++IP++   + + R  + QP  FP  CP C S +       
Sbjct: 376 ----RDLRLGDHVMVYKAGDIIPRIEAPVAHLRTGEEQPIEFPEACPRCGSEIDASEQ-- 429

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508
                   RCT G  C  + +  + +   RD  +IEGLG  ++         A  ++  A
Sbjct: 430 ------RWRCTRGRDC--RLVASISYAAGRDQLDIEGLGTTRVVQLVD----AGLVQDFA 477

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           D+FTL+R Q  S      +   G+ S  NL  +I    +  L R   +LG+R  G  ++R
Sbjct: 478 DLFTLERDQLLS------LDRMGETSTDNLLAAIGAAASRPLSRVFCALGVRGTGRSMSR 531

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            +A+++ S    A            D  +L +V  +G   A A+V   Q       +  L
Sbjct: 532 RIARHFASMDRIAAA----------DVEALQQVDGIGKEKAAAVVRELQELA--PLIGKL 579

Query: 629 LKEVSPS-----------------IGRHEKNVSSEIENKKLVFTGT----LQKIQRHKAQ 667
           +                                  +    +V TG     L+K+ R++  
Sbjct: 580 VAAGVNMTEPGATPPPEPGAAQEGEAEESATSGLPLAGMTVVVTGAMTGALEKLSRNEMN 639

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           E + + G   S+ +S++T +++ G+  GSK  KA+ LGV+I   E+F  L+Q +
Sbjct: 640 ELIERAGGKSSSSVSKRTSLLVAGEKAGSKRTKAEDLGVRIAAPEEFAELVQAH 693


>gi|195941083|ref|ZP_03086465.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
           EC4024]
          Length = 504

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 194/541 (35%), Positives = 308/541 (56%), Gaps = 42/541 (7%)

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +EVRGEV++ +  F  +N+E    G K +ANPRNAA+G LR+L+P     R L FF +G+
Sbjct: 1   MEVRGEVFLPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGV 60

Query: 244 GKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           G              L + +  G PV+N V+  ++   ++++Y++++  R TL +DIDG+
Sbjct: 61  GILEGGDLPDTHLGRLLQFKEWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGV 120

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KV+  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV 
Sbjct: 121 VIKVNSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQ 180

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G L++NATLHN D I  L            +R+GD+V+++RAG+VIP+VV+++ +ER 
Sbjct: 181 VAGVLVSNATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERP 229

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            D +   FP+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +
Sbjct: 230 ADTRAIEFPAHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMD 283

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           ++G+G + +D   + E     +  PAD+FTL         K+  +   G  S  N+ +++
Sbjct: 284 VDGMGDKIIDQLVEKE----YVHTPADLFTLTA------GKLTGLDRMGPKSAQNIVNAL 333

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              +N +  RF+++LGIR VG   A  LA Y+ +     +               L +VP
Sbjct: 334 EAAKNTTFARFLYALGIREVGEATAAGLAAYFGTLDALEKAT----------IDELQKVP 383

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQ 659
            VG ++A  +  F+    N   +  LL++       +  + + + S    K +V TG+L 
Sbjct: 384 DVGIVVATHVYNFFAEESNREVIGKLLEQGIHWPAPVVVNAEEIDSPFAGKTVVLTGSLS 443

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ R  A+  +  LGA V   +S+KTD++I G+  GSKL KAQ+LG+++++E + + LL 
Sbjct: 444 QLSRDDAKARLVALGAKVVGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLG 503

Query: 720 Q 720
            
Sbjct: 504 D 504


>gi|122879187|ref|YP_201049.6| NAD-dependent DNA ligase LigA [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|166216280|sp|Q5H057|DNLJ_XANOR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 841

 Score =  366 bits (940), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 220/674 (32%), Positives = 333/674 (49%), Gaps = 89/674 (13%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +    L + I   D  YY  + P I D++YD L R    +   +P+L  +   + P  ++
Sbjct: 7   ERARELRRRIENADHRYYDLADPEITDAQYDQLFRELQELEQKYPELVTA---DSPSMRV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +  S  KV HSIP LSL   ++  +++ F+ RI+R       N + F++EPK DG  
Sbjct: 64  GGAVRKSFVKVRHSIPMLSLANAFDEVEVKNFVDRIFRRMGS--SNPLEFSVEPKFDGLA 121

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKND 197
           I++RYE GKFV    RGDG  GEDVS  IR I ++P  L  N  P I+EVRGEVY+ ++ 
Sbjct: 122 ISLRYELGKFVQGVTRGDGDVGEDVSENIRTIRSVPLKLKGNNVPAILEVRGEVYMPRDG 181

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG----------KT 246
           F   N   +A G K  ANPRN A+G LR+L+      R L+FF +G+G          + 
Sbjct: 182 FSEFNKRAMARGEKLLANPRNGAAGSLRQLDSRISAQRPLSFFAYGVGLIQVEQDLFEEI 241

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +  A     ML ++R  GFPV++ V       G+++YY  +   R  LP+DIDG+VYK+
Sbjct: 242 PQSIASTHSAMLAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDGVVYKL 301

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ + Q+++G  +R+PRW ++HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G 
Sbjct: 302 DDLAGQREMGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGV 361

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++TNATLHN D I  L           D+RVGD V+V+RAG+VIP+V  ++ ++R P  Q
Sbjct: 362 IVTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPATQ 410

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            +  P+ CP+C S +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GL
Sbjct: 411 SWQMPTQCPVCGSEIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGL 464

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ ++    S      ++  AD++ L   Q      I                  +   
Sbjct: 465 GEKFIEVLVDS----GVVQGVADLYLLTVDQLLQLRMISTAESPHAFLREAREHLASGAY 520

Query: 547 NISLERFIFSLGIRHVGAE------IARSLAKYYLSYQ------------NFAQEINNII 588
              LE  +  +G+   G         A  L     ++             N  + I    
Sbjct: 521 AQ-LEATLVGIGVDLAGEREVPQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSR 579

Query: 589 AHNND--------------------------------DWLSLIRVPLVGDIIAQAIVEFY 616
               +                                 W    RVP +G  +A+++  F+
Sbjct: 580 DTTLERFLFALGIEHVGESTAKALSAWFGDLDLIRHLPWPLFKRVPDIGGEVARSLGHFF 639

Query: 617 QNPRNICAVEALLK 630
             P N  A++ LL 
Sbjct: 640 DQPGNQKAIDHLLA 653



 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
              +  L I  V    A  +A  + S           +               V   +A+
Sbjct: 675 ANLLEDLEIPKVTPIRAAQIATAFGSIDALRNGGPEPLVEA-----------GVPQSVAE 723

Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           ++  +   P N       +  L  +   +    +  +  ++ + +V TGTL  + R  A+
Sbjct: 724 SLATWLLVPANDTLAVKAQKKLSALLAMMPEAGEEKTGPLDGQTVVITGTLAALTRDAAK 783

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + L  L ++ 
Sbjct: 784 QRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGEHG 838


>gi|84623945|ref|YP_451317.1| NAD-dependent DNA ligase LigA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|123752764|sp|Q2P334|DNLJ_XANOM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|84367885|dbj|BAE69043.1| DNA ligase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 841

 Score =  366 bits (940), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 220/674 (32%), Positives = 333/674 (49%), Gaps = 89/674 (13%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +    L + I   D  YY  + P I D++YD L R    +   +P+L  +   + P  ++
Sbjct: 7   ERARELRRRIENADHRYYDLADPEITDAQYDQLFRELQELEQKYPELVTA---DSPSMRV 63

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG +  S  KV HSIP LSL   ++  +++ F+ RI+R       N + F++EPK DG  
Sbjct: 64  GGAVRKSFVKVRHSIPMLSLANAFDEVEVKNFVDRIFRRMGS--SNPLEFSVEPKFDGLA 121

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKND 197
           I++RYE GKFV    RGDG  GEDVS  IR I ++P  L  N  P I+EVRGEVY+ ++ 
Sbjct: 122 ISLRYELGKFVQGVTRGDGDVGEDVSENIRTIRSVPLKLKGNNVPAILEVRGEVYMPRDG 181

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG----------KT 246
           F   N   +A G K  ANPRN A+G LR+L+      R L+FF +G+G          + 
Sbjct: 182 FSEFNKRAMARGEKLLANPRNGAAGSLRQLDSRISAQRPLSFFAYGVGLIQVEQDLFEEI 241

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +  A     ML ++R  GFPV++ V       G+++YY  +   R  LP+DIDG+VYK+
Sbjct: 242 PQSIASTHSAMLAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDGVVYKL 301

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ + Q+++G  +R+PRW ++HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G 
Sbjct: 302 DDLAGQREMGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGV 361

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++TNATLHN D I  L           D+RVGD V+V+RAG+VIP+V  ++ ++R P  Q
Sbjct: 362 IVTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPATQ 410

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            +  P+ CP+C S +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GL
Sbjct: 411 SWQMPTQCPVCGSEIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGL 464

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ ++    S      ++  AD++ L   Q      I                  +   
Sbjct: 465 GEKFIEVLVDS----GVVQGVADLYLLTVDQLLQLRMISTAESPHAFLREAREHLASGAY 520

Query: 547 NISLERFIFSLGIRHVGAE------IARSLAKYYLSYQ------------NFAQEINNII 588
              LE  +  +G+   G         A  L     ++             N  + I    
Sbjct: 521 AQ-LEATLVGIGVDLAGEREVPQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSR 579

Query: 589 AHNND--------------------------------DWLSLIRVPLVGDIIAQAIVEFY 616
               +                                 W    RVP +G  +A+++  F+
Sbjct: 580 DTTLERFLFALGIEHVGESTAKALSAWFGDLDLIRHLPWPLFKRVPDIGGEVARSLGHFF 639

Query: 617 QNPRNICAVEALLK 630
             P N  A++ LL 
Sbjct: 640 DQPGNQKAIDHLLA 653



 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
              +  L I  V    A  +A  + S           +               V   +A+
Sbjct: 675 ANLLEDLEIPKVTPIRAAQIATAFGSIDALRNGGPEPLVEA-----------GVPQSVAE 723

Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           ++  +   P N       +  L  +   +    +  +  ++ + +V TGTL  + R  A+
Sbjct: 724 SLATWLLVPANDTLAVNAQKKLSALLAMMPEAGEEKTGPLDGQTVVITGTLAALTRDAAK 783

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + L  L ++ 
Sbjct: 784 QRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGEHG 838


>gi|282877678|ref|ZP_06286493.1| NAD-dependent DNA ligase domain protein [Prevotella buccalis ATCC
           35310]
 gi|281300250|gb|EFA92604.1| NAD-dependent DNA ligase domain protein [Prevotella buccalis ATCC
           35310]
          Length = 657

 Score =  366 bits (940), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 165/712 (23%), Positives = 299/712 (41%), Gaps = 65/712 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++    R+++  L +E++   D YY      + D E+DA       +       +    P
Sbjct: 1   MT-NDLRQKMQQLVEELNRASDNYYSGRTESMTDFEWDAKFDELKRLEQE----SGLVLP 55

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P   +         K  H  P LSL K    E+L K+                   L 
Sbjct: 56  DSPTTNVSDGTITG-QKEAHEFPMLSLAKTKKPEELVKWAE------------ERPIWLS 102

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  + + Y+ GK      RG+GH G +++    AI  IP   ++     + +RGE 
Sbjct: 103 WKLDGLTLVVTYDDGKLTKVVTRGNGHVGTNITHLAPAIQGIP--ATIKNSGHLVIRGEA 160

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
            IS  DF   N E      + YANPRN ASG L   +  ++ R    ++      ++   
Sbjct: 161 VISYADFEVFNMEA----DEAYANPRNLASGSLTLKDVEEVKRRKIQWIPFTLVFTDEAI 216

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQAN---TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
               E L  +R +GF V    R ++                   +  P+ +DGLV   D+
Sbjct: 217 NSWGERLDWLREMGFNVVKHERISDPSIHNVNQAIEQWTNLVTHNQCPFPVDGLVITFDD 276

Query: 309 FSLQKQLG-ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            +           + R  ++ K+ ++ A+T L  I+     +  ++PVA  +PV + G  
Sbjct: 277 TAFAATGSITGHHATRAGLAFKWEDEAATTELEYIEWSCAAST-ISPVAVFKPVELEGTT 335

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+L N    + L   G           G  + V +A ++IPKV+ ++          
Sbjct: 336 VKKASLCNISECERLGIGG----------PGSVLSVIKANKIIPKVIKVVQTV-----GA 380

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP+C  +   D++  +G            AC A+QL++   FVS++  +I+G+ 
Sbjct: 381 LEIPHECPVCHHQTRIDISKASGTRTLH---CTNEACPAKQLKKFNRFVSKNGMDIDGIS 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +Q L  F         +   ADI+ L         +I ++ GFG+ S  N+  SI K R 
Sbjct: 438 EQTLAKFIN----LGWLNTYADIYRLPNY----AQQIASLEGFGNKSAGNMMRSIEKSRT 489

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +   +F+++L I   G +  + L   Y  ++  ++ I        D   +   +P +G  
Sbjct: 490 VEARKFLYALTIPMCGVDACKRLLDAYSLHELISKAIEA------DTPEAFANIPGIGPE 543

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKA 666
            + ++V+++Q   N   V+ LLK ++       +   +  E    V TG +   + R + 
Sbjct: 544 TSASVVKWFQVEANRNVVDDLLKTLNVE-QPSTQPTGARCEGLTFVITGDVHHYKNRAEL 602

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLF 716
           + Y+   G  V+  +S+ T+ +I    ++   K +KA++LG++I++E+QF  
Sbjct: 603 KAYIENQGGHVTGSVSKSTNYLINNNVNSTSGKNKKAKELGIEIISEDQFRE 654


>gi|315452902|ref|YP_004073172.1| DNA ligase [Helicobacter felis ATCC 49179]
 gi|315131954|emb|CBY82582.1| DNA ligase [Helicobacter felis ATCC 49179]
          Length = 733

 Score =  366 bits (939), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 210/754 (27%), Positives = 344/754 (45%), Gaps = 96/754 (12%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
            +   YY    P++ D EYD L ++     HA P+         P  ++G  +   L K 
Sbjct: 17  QYAHHYYVLDDPLVSDFEYDTLYQQIQDYEHAHPEQILEH---SPTQRVGDALLSYLPKH 73

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
           TH     SL+ ++++E L+ +I RI++ +         FT  PK+DG  + + Y++GK V
Sbjct: 74  THLERMWSLDNVFDLEGLQTWIARIFKVYPHA-----RFTCSPKLDGVSLNLFYDQGKLV 128

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
            A  RG+G  GE V+   + IP+IP  L +   E +E+RGEV I   DF  +N E   + 
Sbjct: 129 SATTRGNGIEGELVTHIAKTIPSIP--LRIAPTEPLEIRGEVTIENADFEKINAERAKLN 186

Query: 210 RKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268
           +  +ANPRNAA+G LR+L+P     R L+F   GLG+ +      +  M   +     P+
Sbjct: 187 QPLFANPRNAAAGSLRQLDPRISAKRKLSFTPWGLGRCAPTLPSFKAMMDCLLENHFLPM 246

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
                   +   I   Y E+ + R      +DG+V  VD+F++QK+LG   ++PR+ I++
Sbjct: 247 PFS--LCGSVEEIQQVYTELHAQRERAKVGMDGMVVVVDDFAMQKELGFTLKAPRFAIAY 304

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           KF   +  TRLL++  Q+GR+G +TPVARLEPVN+ GA I  ATL++   I+        
Sbjct: 305 KFPALEKHTRLLEVIAQVGRSGAITPVARLEPVNLDGAQIARATLNSYTDIQ-------- 356

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV------- 441
               +D+++ D V+V R+G+VIP+V+  +V+ R    +P   P+ CP C+S +       
Sbjct: 357 ---QKDLQLNDMVVVLRSGDVIPQVIKPLVHLRDGSQKPIIPPNHCPSCESLLEQQPLNI 413

Query: 442 ----------------------------------------------VRDLNPKTGKLVAA 455
                                                                     A 
Sbjct: 414 CPQCHLPLLLKDKPNFCPSCARFAPHAHLKNARSCPSCAQALEYKPFCYRCNLDLSAHAR 473

Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQR 515
             C    +CSA+    L +F S+    I GLG + +    +++     I   +D++TL+ 
Sbjct: 474 ALCCVNPSCSAKLHASLVYFASKQGLEIAGLGDKVVKQLLEAK----LISQISDLYTLRL 529

Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575
                   +  + G+      NL D+I K ++  L RFI +LGI ++G   ++ LA    
Sbjct: 530 ED------LLQLEGWKHKRAQNLLDAIAKTKHAPLWRFINALGIENIGKGASKKLAGILG 583

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGD-IIAQAIVEFYQNPRNICAVEALLKEVSP 634
             + F Q+ +         +         GD   A+A  EF     +   +  L++ + P
Sbjct: 584 -LEVFDQDYSGYQRAFKKIFQGARE-DQKGDYKSARAFWEF--VQTHRAKIAHLMRLIEP 639

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
           +I           + K +V TG+   I R   ++Y+  LGA V   LS KTD+++ GD P
Sbjct: 640 TIAEKRAPQCGFFQGKVVVITGSFS-IPRDALRQYLEDLGAEVKGHLSAKTDLLLCGDKP 698

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIH 728
           GSKLE+A++  + IM  +       Q+  +    
Sbjct: 699 GSKLEEAKKHNISIMGIDALRV---QFKKSTPPP 729


>gi|227874422|ref|ZP_03992603.1| DNA ligase (NAD(+)) [Oribacterium sinus F0268]
 gi|227839738|gb|EEJ50187.1| DNA ligase (NAD(+)) [Oribacterium sinus F0268]
          Length = 692

 Score =  366 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 182/716 (25%), Positives = 317/716 (44%), Gaps = 70/716 (9%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
             + +   +  L   ++     YYQ  + I+ + EYD       ++       +      
Sbjct: 37  DKQDSIARMKELISFLNEAAKAYYQEGREIVSNLEYDKAYDTLLSLEKE----SGVVLSG 92

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +G  +  +L K  H  P LSL+K  ++EDL+ F+                  L  
Sbjct: 93  SPSQNVGYAVATALPKEAHETPMLSLDKTKSVEDLQSFLQ------------GQEGILSW 140

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  I + Y++GK + A  RG+G  GE V+   +    +P  L +     + VRGE +
Sbjct: 141 KLDGLTIVLHYQEGKLLKAVTRGNGIIGELVTENAKTFQNLP--LQIPFKGHLVVRGEAF 198

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS---- 247
           IS +DF  +N+E+   G   Y NPRN  SG +R+L+P     R +   +  L        
Sbjct: 199 ISYSDFERINEELPEEG-AKYKNPRNLCSGSVRQLDPKVTKERRVQISLFSLVLAEEEGK 257

Query: 248 -EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
              F     E  + +   GF  +   R+      I     E   +     +  DGLV   
Sbjct: 258 APDFHNQHEEEFRFLEKQGF--SVVHRKMVNAENIQEAVAEFSKLMPKNDFPSDGLVLLY 315

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           ++ +  + LG  A+ PR  I+ K+ +++ +T+LL ++    RTG++ PVA   PV + G 
Sbjct: 316 NDIAYGESLGRTAKFPRNAIAFKWQDEEETTKLLSVEWSPSRTGLINPVAIFTPVELEGT 375

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++ A+LHN  Y + L            + +GD + V +A  +IP++ +         + 
Sbjct: 376 VVSRASLHNITYCEDLA-----------LGIGDEITVYKANMIIPQIGENKT-----KSG 419

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP CQ       + +T              C A+++++   FVSRDA NIEGL
Sbjct: 420 NLEIPKHCPACQGETKIVKDKETK-----MLYCTNPHCPAKRIKQFALFVSRDALNIEGL 474

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            +  L+ +         I+   D+F+L++ ++    +I  + GFG  S   + ++I K +
Sbjct: 475 SEMTLEKWLGR----GFIQEFPDLFSLEKYRE----EIIGMEGFGLKSFEKIQENIEKAK 526

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +L R ++ LGI  +G    R LA+ +           +     +     +++V  +G 
Sbjct: 527 TSNLGRLLYGLGIEGIGVSNGRMLAEAF---------SQDPYKLMDATKEEILQVKGIGQ 577

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHK 665
           ++A +I E++Q   N   V  LL  +       E+     I  K  V TG +     R  
Sbjct: 578 VLADSIAEYFQKEENRRIVLELLSILHLEKEEKEEKSG--ISGKHFVITGAVHHFPNRKA 635

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +E + + G   S+ +S+ TD +I  D+    SK +KA++LG+ I+ EE+FL LL+
Sbjct: 636 LEEEIRKAGGQSSSSVSQNTDYLINNDSTSGSSKNKKAKELGIPIITEEEFLKLLE 691


>gi|332704021|ref|ZP_08424109.1| DNA ligase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554170|gb|EGJ51214.1| DNA ligase [Desulfovibrio africanus str. Walvis Bay]
          Length = 771

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 209/622 (33%), Positives = 331/622 (53%), Gaps = 53/622 (8%)

Query: 113 RIYRFWQKKDDNSIF-----FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACI 167
           R+     ++   S+      F ++PK+DG  +   YE G+ V AA RGDG  GEDV+  +
Sbjct: 179 RVLAELSEQTWQSLPALLGTFWIDPKLDGLALEAIYENGRLVRAATRGDGEIGEDVTQNV 238

Query: 168 RAIPTIPRVLS--LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILR 225
           R +  +P VL     +P ++EVRGEV + K DF ALN+     G K +ANPRNAA+G +R
Sbjct: 239 RTVKNLPLVLHDGGVMPRLLEVRGEVVMRKADFHALNERQAERGEKIFANPRNAAAGSVR 298

Query: 226 RLNPT-DITRYLNFFVHGLGKTSE---IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI 281
           +L+P    TR L FF +G+G+         +GQ E++  +  LGF +    RQ      +
Sbjct: 299 QLDPRITATRPLRFFAYGIGRVDWNGAPGWQGQDEIIAGLAQLGFAIPPEARQCRHPDEV 358

Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341
            + +  +++ R  LP++IDGLV K++   LQ+ LG  A++PRW ++ KF   QA T L D
Sbjct: 359 AASFERLQAGREALPFEIDGLVAKLNCLELQRFLGFTAKAPRWALALKFPAYQAETLLRD 418

Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401
           I IQ+GRTG+LTPVA L+PV++GG  +++A+LHNE YI+            +D+R+GDRV
Sbjct: 419 IRIQVGRTGVLTPVAELDPVSVGGVTVSSASLHNESYIR-----------EKDLRLGDRV 467

Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461
           L++RAG+VIP+VV  +  +R    Q ++FP  CP+C + V+     +         C   
Sbjct: 468 LIQRAGDVIPEVVRPLAEKRTGGEQEYTFPPECPVCHTEVILASEERRIWKCVNISCPA- 526

Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
                   + + HFVS+   +IEGLG++ ++           +R PAD+FTL++    + 
Sbjct: 527 -----VIRQSIIHFVSKAGLDIEGLGRKWVEILIDK----GMVRSPADLFTLKKTDLLT- 576

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISL-ERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580
                +   GD S +N  +SI + +  +   R I +LGI HVG E AR LA  +      
Sbjct: 577 -----LERMGDKSASNFVESIRQAKEEAKLPRLIAALGIPHVGEETARLLASRFRDLDAL 631

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
                            L  +P + D I+++IV+F+ N  N   +    +          
Sbjct: 632 GAATR----------QELEELPGISDKISESIVDFFLNEANRSLLGRFKEIGLWPSNAPA 681

Query: 641 KNVSS----EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
                     +  K+++FTG L  + R +A+  + Q G   +  +S+  D ++VG+NPGS
Sbjct: 682 VAPEGKTKLPLAGKRVLFTGGLPSMSRSEAETLLEQAGGTAAKSISKNVDYVVVGENPGS 741

Query: 697 KLEKAQQLGVKIMNEEQFLFLL 718
           KL+KA +LG+ ++  E+FL L+
Sbjct: 742 KLDKADKLGLAVIGFEEFLRLV 763



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 3/103 (2%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E  R+ +  L +E+ +H+  YY    P+I D+EYD + R    +    P+L    D + 
Sbjct: 5   PEDIRQRVERLRKELHFHNYRYYVLDAPVISDAEYDRMMRELQDLEEHNPEL---RDTSS 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR 116
           P  ++G        +  H++   SL+   ++++ R+F+ R+ R
Sbjct: 62  PTQRVGAAPAEGFAQYRHALRMYSLDNAMSVDEWREFVARVGR 104


>gi|254383856|ref|ZP_04999203.1| DNA ligase [Streptomyces sp. Mg1]
 gi|194342748|gb|EDX23714.1| DNA ligase [Streptomyces sp. Mg1]
          Length = 696

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 185/725 (25%), Positives = 297/725 (40%), Gaps = 76/725 (10%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R E  +  + +      YY     ++ D+ YD L+    A     P       P  P   
Sbjct: 25  RSEYEAALRRLREASQAYYGDGDSVMDDASYDRLRLALLAWETEHPAEVA---PGSPTTL 81

Query: 78  I--GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +  G         V H+   LSL+ +++ E L  +   + R   +       FT+EPKID
Sbjct: 82  VADGAAPAGD---VAHTTRLLSLDNVFDAEGLVAWGASVERRLGRAPAGG--FTVEPKID 136

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +  RY  G+ V    RGDG  GED+S  I  I  +P +L+      +EVRGEV  ++
Sbjct: 137 GAAVAARYRGGRLVRIVTRGDGSQGEDISHVIGQIDGLPELLAG--EATVEVRGEVAFTQ 194

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL----GKTSEIFA 251
             F   N   +A G   +ANPRN  +G LR  +     R   F+ +G     G       
Sbjct: 195 EQFEVANAVRVAHGAPVFANPRNGTAGTLRAKDRPYRLRMT-FWAYGAVELEGVPFLPAG 253

Query: 252 KGQYEMLQKMRCLGFPVNNGV----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
             Q E L  +   G              +   G     + M ++R+ LP  IDG+V K++
Sbjct: 254 ATQAEALAAVAAAGVRTTAAAGAGLHIVDDLAGAQQAVDAMAAMRAELPVGIDGVVIKLN 313

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + + Q+ +G   R P W I+ K    +  T L D+  ++GRTG+L P A L PV I G+ 
Sbjct: 314 DTAEQEAIGSGTRFPYWAIAVKLPAVERQTVLEDVVWEVGRTGVLAPTAVLAPVEIDGST 373

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +T ATLHN   I+            RD+ +GD V V +AG++IP+V   +   R   A+P
Sbjct: 374 VTRATLHNPADIRR-----------RDLHIGDTVTVYKAGDIIPRVQAAVALLRPAGAKP 422

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP C   +               RC      S      +++   R+  +I+GLG
Sbjct: 423 VPLPETCPRCGGEIN--------TAQERWRC--AKGTSCALPALIEYAAGREMLDIDGLG 472

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           K  +     S D    +   AD+FTL   Q T+ +               L + I   + 
Sbjct: 473 KTYVAALVDSGD----VTDVADLFTLTLEQLTAASG-------SSRRAAKLAEQIEAAKA 521

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R   +LG+   G  ++R +A+++++ +   +           D   +  V  +G  
Sbjct: 522 RPLSRVFCALGVLGTGRSMSRRIARHFVTMEAIRRA----------DAAEMQDVEGIGPE 571

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE---KNVSSEIENKKLVFTGT----LQK 660
            A  IVE  Q       ++ L+               +    ++ K +V TG     L+ 
Sbjct: 572 KAPVIVE--QVAALAPVIDKLIAAGVTLHEPEASATASAGGPLDGKVVVVTGKMAGPLEG 629

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----NPGSKLEKAQQLGVKIMNEEQFLF 716
             R +    + + G    + +S +T +++        P SK  KA +LGV+++  E F  
Sbjct: 630 FGRTEMNALIEKAGGRAGSGVSARTSVLVCAPSASGKPSSKAVKAAELGVEVLTPEAFAE 689

Query: 717 LLQQY 721
           L+  Y
Sbjct: 690 LVADY 694


>gi|282881715|ref|ZP_06290378.1| DNA ligase domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281304474|gb|EFA96571.1| DNA ligase domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 655

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 163/708 (23%), Positives = 286/708 (40%), Gaps = 64/708 (9%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             ++ +  L  +++   D YY     ++ D E+DAL      +  +    +    P+ P 
Sbjct: 2   DIQQRMRKLVDKLNLASDNYYGGKPELMTDYEWDALFDELKQLEMS----SGVVLPDSPT 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           N++         K  H  P LSL K     DL K+                   L  K+D
Sbjct: 58  NRVSDGEMNG-KKEAHEFPALSLAKTKQPADLVKWAE------------GKPVWLSWKLD 104

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +   Y+ G+      RG+GH G +++   +AI  +P   ++       +RGE  IS 
Sbjct: 105 GLTLVATYDDGRLSKVVTRGNGHIGTNITHLAKAIGGMP--ATIPFQGHTVIRGEAVISY 162

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG- 253
            DF   N          YANPRN ASG L   +  ++  R++ +    L    +      
Sbjct: 163 ADFEVFN----LESDDAYANPRNLASGSLTLKDVKEVERRHIQWIPFTLVFVEQEIKTWG 218

Query: 254 -QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q + L++              +      V      K  +   P+ +DGLV   D+ S  
Sbjct: 219 EQMDWLEQQGFHPVERERINEPSLPVVEQVIERWTEKVTQKRNPFPVDGLVVVFDDISFA 278

Query: 313 KQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
                      R  ++ K+ ++ A+T L  I+     +  ++PVA   PV + G  +  A
Sbjct: 279 ATGSVTGHHATRAGLAFKWQDEAATTTLRHIEWSCAAST-ISPVAVFAPVELEGTTVQRA 337

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +L N    K L   G           G  + V +A ++IPKV+ +I +        F  P
Sbjct: 338 SLCNISECKRLGIGG----------PGSTLSVIKANKIIPKVIRVIQSV-----GTFDIP 382

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C    V   +  +G L          AC A+Q+++   FVS+   NI+G+ +Q L
Sbjct: 383 KSCPVCHHEAVVRESAVSGTLTLH---CTNEACPAKQIKKFDRFVSKAGMNIDGISEQTL 439

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           D F         I   ADI+ L         ++ ++ GFG+ S+ N+  SI + R +   
Sbjct: 440 DKFIN----LGWIETYADIYRLSAH----AAELASLEGFGEKSMRNIMQSIEQSRTVEAH 491

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
            F+++L I   G ++ + L + Y   +  +               +   +P +G   + +
Sbjct: 492 HFLYALSIPLCGVDVCKRLLEAYPLAELISVATTAT------SLDAFAHIPGIGPEKSAS 545

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670
           +V ++Q   N   V  LL EV        +   +  +    V TG +   + R + + Y+
Sbjct: 546 LVTWFQGEANQRIVNDLLSEVQIE-EPSLQPQGARCQGMTFVITGDVHHYKNRAELKSYI 604

Query: 671 TQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716
              G  V+  +S+ T  +I  D  +   K +KA+ LG+ I++E++F+ 
Sbjct: 605 ESQGGKVTGSVSKSTTYLINNDVNSTSGKNKKAKDLGISIISEDEFVE 652


>gi|313678467|ref|YP_004056207.1| DNA ligase (NAD+) [Mycoplasma bovis PG45]
 gi|312950136|gb|ADR24731.1| DNA ligase (NAD+) [Mycoplasma bovis PG45]
          Length = 654

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 195/708 (27%), Positives = 341/708 (48%), Gaps = 55/708 (7%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  + A++ + SL  +I+  +  YYQ +KP + D EYD      + +   +P+       
Sbjct: 1   MESKNAKELIKSLVDKINQWNYEYYQLNKPSVSDLEYDKALWELEKLEKEYPEFVLD--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+G   +    K  H  P LSL K ++ +D++ FI  I +         I F +E
Sbjct: 58  DSPTFKLGSFASEKFTKFIHKKPMLSLAKAYSYDDIKSFINNISKIV---PAERINFNIE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK+DG  I + Y+KGK V A  RGDG  GEDV+  I  I +IP    +N    +EVRGEV
Sbjct: 115 PKVDGLSIALHYKKGKLVKAVTRGDGTEGEDVTENIYQIKSIP--KLINYLNDLEVRGEV 172

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
           +ISK++F  +N+       +  A     +  + +  +     R L+ F++ + +      
Sbjct: 173 FISKDNFKKINESNNFANARNAA-----SGTLRQLDSTIVAKRNLSAFLYEVVEPEMHNI 227

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q E L+ M+ L  P N   +       +    ++   I++ L YD DGLV K+++  +
Sbjct: 228 NYQNEALEFMKKLNIPTNPFSKVVE-IEELEEAISDFAEIKNKLDYDSDGLVIKLNDLQM 286

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
            ++LG+ ++ P+  I+ K+  + AS+ ++DI   +GRTG +T +A + PV +    +  A
Sbjct: 287 WEKLGKTSKFPKHSIAFKYDVEVASSTIVDILTSVGRTGKITYIANIHPVILNQTSVRAA 346

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN ++IK +           +I + D V + +AGE+IPKV+ +  ++ + D   +   
Sbjct: 347 TLHNHNFIKDM-----------NININDEVNIIKAGEIIPKVISLKNSKNYVD--YYKKA 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + CP C S ++              +      C  + +  + HF SR+  NI GLG   +
Sbjct: 394 TNCPSCNSELIEFEG-------IVDQFCTNDECPEKNVNNIYHFASRNCMNIVGLGLSTV 446

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             F+        I+   DIF+L + +     ++  +  +G+  V N+ +SI   +N +  
Sbjct: 447 KDFYPK-----FIKKIKDIFSLYKYKS----ELILLPRYGEQKVDNILNSIESVKNKAFS 497

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + +F+LGI+H+G   A+ ++  Y+++     +              L     +G  I ++
Sbjct: 498 KVLFALGIKHIGQRAAKLISDNYVNFAEILNDSE---------LSKLKSTKNIGPKIIES 548

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           + E+  NP N   +  L      +     K +S+       V TGTL +  R    + + 
Sbjct: 549 LTEYINNPLNKDLLIYLDSI--FNYEGKTKAISNIFSGYSFVITGTLSE-PRSHFVKIIE 605

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +    VSA +S +T  ++ G   GSKLEKA +LGVK++NEEQF  LL+
Sbjct: 606 ENSGSVSASVSGRTSYVLAGSEAGSKLEKAYKLGVKVINEEQFYKLLE 653


>gi|126347877|emb|CAJ89597.1| putative DNA ligase [Streptomyces ambofaciens ATCC 23877]
          Length = 702

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 195/717 (27%), Positives = 320/717 (44%), Gaps = 89/717 (12%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
               + D+ YD L R   A     PD      P+ P  K+ G        V H++P LSL
Sbjct: 35  GSSPLDDATYDRLARGIAAWEAEHPDEVL---PDSPTGKVAGGAAEG--DVPHTVPMLSL 89

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E+   +   + R   ++ D    F + PK+DG  +  RY  G+      RGDG 
Sbjct: 90  DNVFSPEEFLAWTVSLARRTGREVD---RFVVGPKLDGLAVAARYRAGRLTRLITRGDGT 146

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDVS  I  +  +P  L+  +   +E+RGE+ ++   F   N+     G +P+ANPRN
Sbjct: 147 AGEDVSHAIGTVEGLPETLAEPV--TVEIRGEILMTTAQFEHANEVRTGHGGQPFANPRN 204

Query: 219 AASGILRRLNPTDITRYLNFFVHGLGKTS-------EIFAKGQYEMLQKMRCLGFPVNNG 271
           AA+G LR            F    L            +    Q +++     LG   + G
Sbjct: 205 AAAGTLRARERAYTVPMTFFGYGMLPLPETDAVLAGRLDDLAQSDLMSMAAGLGVHTSAG 264

Query: 272 VRQ----ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
                    T   +V+   E  ++R+ LP+ IDG+V K D  + ++  G  +R+PRW ++
Sbjct: 265 TAVPDVVVTTPEQVVARVRETAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAVA 324

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
           +K    +  TRLL+++  +GRTG++ P   LEPV I G+ IT ATLHN   I        
Sbjct: 325 YKLPAVERITRLLEVEWNVGRTGVIAPRGVLEPVVIDGSTITYATLHNPADITR------ 378

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447
                R +R+GD V+V RAG+VIP++   + + R  D +P +FPS CP C S +      
Sbjct: 379 -----RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGDERPIAFPSVCPRCGSDID----- 428

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                    RC  G  C    +  L +   RD  +IEGLG  ++    +    A  +   
Sbjct: 429 ---TSQERWRCAQGRNC--HLVASLAYAAGRDQLDIEGLGATRVVQLVE----AGLVADL 479

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
           AD+FTL R Q         +   G  S  NL  ++   +   L R + +LG+R  G  ++
Sbjct: 480 ADLFTLGREQLLG------LDRMGQTSTDNLLAALAAAKEQPLSRVLCALGVRGTGRSMS 533

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           R +A+++ +  +              D  ++ +V  +G   A +IV           ++ 
Sbjct: 534 RRIARHFATMDHIRAA----------DADAMQQVEGIGPEKAPSIVAEIAELA--PLIDK 581

Query: 628 LLKEVSPSIGR------------HEKNVSSEIEN---------KKLVFTG----TLQKIQ 662
           L                       E++  S +            ++V TG    +L+K+ 
Sbjct: 582 LAAAGVGMTEPGATPPPVTGADAEEEDGGSPVAAPGAAGPLAGMRVVVTGAMTGSLEKLS 641

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           R++  E V + G   S+ +SRKT +++ G+  GSK  KA+QLG+++   E+F  L+ 
Sbjct: 642 RNEMNELVERAGGHSSSSVSRKTTLVVAGEGAGSKRAKAEQLGIRLATPEEFAALVA 698


>gi|329937546|ref|ZP_08287104.1| DNA ligase [Streptomyces griseoaurantiacus M045]
 gi|329303422|gb|EGG47309.1| DNA ligase [Streptomyces griseoaurantiacus M045]
          Length = 697

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 204/731 (27%), Positives = 318/731 (43%), Gaps = 93/731 (12%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90
               YY      + D  YD L R   A     P+      P  P  K+ G        V 
Sbjct: 18  ASAAYYADGTSALDDEAYDRLVRGIAAWEADHPEQVL---PGSPTGKVAGGAVEG--DVP 72

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
           H++  LSL+ +++ E+   +   + R           F++EPK+DG  +  RY KG+   
Sbjct: 73  HTVAMLSLDNVFSPEEFTAWTASLARRAG---HEVERFSVEPKLDGLAVAARYTKGRLER 129

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
              RGDG +GEDVS  I  I  +P  L+  +   +EVRGEV ++   F   N+   A G 
Sbjct: 130 LITRGDGTAGEDVSHAIGTIEGLPVELAEPV--TVEVRGEVLMTTAQFEHANEVRTAHGG 187

Query: 211 KPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA-------KGQYEMLQKMRC 263
           +P+ANPR A++G LR            F    L       A       +   E++ +   
Sbjct: 188 QPFANPRGASAGSLRARERAYTVPMTFFGYGLLPLPGTDTALATRLADEAHSELMTRAAA 247

Query: 264 LGFPVNNGVRQ----ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            G             A T   ++    E+ ++R+ LP+ IDG+V K D  + Q+  G  +
Sbjct: 248 YGINTTATTAVPGSTAGTVTEVLDRVREIAALRAELPFGIDGIVVKADLAADQRAAGSGS 307

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           R+PRW I++K    +  TRLL+++  +GRTGI+ P A LEPV I GA IT ATLHN   I
Sbjct: 308 RAPRWAIAYKLPAVEKITRLLEVEWNVGRTGIIAPRAVLEPVEIDGATITYATLHNPADI 367

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
                        RD+R+GDRV+V RAG+VIP+V   + + R  + QP  FP+ CP C +
Sbjct: 368 TR-----------RDLRLGDRVMVHRAGDVIPRVEAPVAHLRTGEEQPIVFPAVCPRCGA 416

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            +               RC  G  C    +  L +   RD  +IEGLG  ++        
Sbjct: 417 GIDTGEQ--------RWRCENGRNC--HLVAALSYAAGRDQLDIEGLGHTRVVQLVD--- 463

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
            A  +   AD+F+L R Q         +   G+ S  NL  ++   +   L R + +LGI
Sbjct: 464 -AGLVTDLADLFSLTREQLLG------LERMGETSTDNLLAALETAKGRPLARVLCALGI 516

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           R  G  ++R +A+++ +  +              D  ++ RV  +G   A +IV      
Sbjct: 517 RGTGRSMSRRIARHFATMDHIRAA----------DAEAMRRVEGIGTEKAPSIVAELAEL 566

Query: 620 RNICAVEALLKEVSPS-------------------------IGRHEKNVSSEIENKKLVF 654
                ++ L+                                   E++    +    +V 
Sbjct: 567 A--PLIDRLVAAGVNMTEPGATPPAPEEPATGEQAEDTRGGAEAAEESPGGPLAGMTVVV 624

Query: 655 TGT----LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           TG     L+K+ R++  E V Q G   S+ +SRKT +++ G+  GSK  KA+ LG+++  
Sbjct: 625 TGAMTGRLEKLSRNRMNELVEQAGGRSSSSVSRKTTLVVAGEGAGSKRAKAESLGIRLAT 684

Query: 711 EEQFLFLLQQY 721
            E+F  LL  +
Sbjct: 685 PEEFAALLADH 695


>gi|54024876|ref|YP_119118.1| putative DNA ligase [Nocardia farcinica IFM 10152]
 gi|81374723|sp|Q5YVN7|DNLJ1_NOCFA RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|54016384|dbj|BAD57754.1| putative DNA ligase [Nocardia farcinica IFM 10152]
          Length = 663

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 213/720 (29%), Positives = 329/720 (45%), Gaps = 78/720 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            A + +  L   I      YY    P++ D+EYDA++    A+  A P+LA   DPN PL
Sbjct: 2   DAGERIRELADRIVELRTAYY-EGAPLVADAEYDAVEDELRALIAAHPELA--PDPN-PL 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +++G    L    V HS P LSLEK    E +  F  R                + PK+D
Sbjct: 58  DQVGAPAVLH-APVRHSRPMLSLEKATTPEQVAAFFER---------FPGQPVVVMPKLD 107

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + YE G+ V A  RGDG +G+DV+  +RA+           P  +EVRGE  + +
Sbjct: 108 GLSLALVYEDGRLVRAVTRGDGTTGDDVTMLVRALVDGVPEQIDV-PGRVEVRGEAVMLR 166

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQ 254
           + FLA N        KP  NPRNAA+G LR  +P     R L FF   L       A   
Sbjct: 167 STFLAYNAA---HPDKPLINPRNAAAGTLRAKDPATVAERRLRFFGFDLDTAEGGAAADL 223

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L+ +   G      +R         +   +++  R+ L YDIDG V ++ +      
Sbjct: 224 GEGLRALGIAGA----AMRMCADAEQAQAAITDIERGRNDLDYDIDGAVLRLADRDAYAA 279

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
            G R+ SPR  ++ KFA ++ +T L  +   +G+TG + PVARLEPV +GG  +T ATL 
Sbjct: 280 AGTRSNSPRGALAFKFAAEEKTTVLEAVTWDVGKTGKIVPVARLEPVFVGGTTVTKATLA 339

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI-IVNERHPDAQPFSFPSF 433
           N+  I+            RDI+VGD VLV+RAG+VIP V  +   ++R         P+ 
Sbjct: 340 NQQVIR-----------ARDIKVGDTVLVRRAGDVIPFVAGVLDASKRTGAEVEIVPPTE 388

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C   V    N +              +C AQ + RL H+ SR A +I+ +G   ++ 
Sbjct: 389 CPSCGQPVTEQGNSRE-------LFCTNASCPAQTVRRLIHWASRAAADIDAIGGVWIER 441

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +    A  +  P+D +TL +       ++      G+VS T + +SI++ R++ L R 
Sbjct: 442 LAE----AGILENPSDFYTLTKE------RLLEFDRIGEVSATRMIESIDRSRDVGLRRA 491

Query: 554 IFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           +  L I       A  LA+  + S +  A                L+ V  +G  +A ++
Sbjct: 492 LIGLAIPMASEGTAARLARAGFASLEEVADAGE----------ERLVAVEDIGPKVAASL 541

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTL------QKI 661
           VE     R    +E L +       R E         + +  K +V TG +      +K+
Sbjct: 542 VEHLT--RLRPELERLRERGVSLDVREEDLPPVVAAGAPLAGKTVVVTGAISDPRSGEKV 599

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQ-FLFLLQ 719
            R   Q    + GA  ++ +S  TD++I G   G SKL KA++LGV+I+++   +  L++
Sbjct: 600 ARPTFQRLCEKAGATAASSVSANTDLLITGAGVGESKLAKAEKLGVEIVDQATIWAQLIE 659


>gi|255521025|ref|ZP_05388262.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J1-175]
          Length = 550

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 206/583 (35%), Positives = 310/583 (53%), Gaps = 46/583 (7%)

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
           GK+   A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  F  LN+  
Sbjct: 4   GKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSFQKLNEIR 61

Query: 206 IAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
              G+  +ANPRNAA+G LR+L+     +R L+ F++ +    E+  +     L  +  L
Sbjct: 62  EEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSAGLDMLETL 121

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           G  VN   R  N+   + +Y  E    R+ L YDIDG+V K++    Q+Q+G   +SPRW
Sbjct: 122 GLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMGNTVKSPRW 181

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
            I++KF  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNED       
Sbjct: 182 SIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNED------- 234

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
               +   +DIR+GD VL+K+AG++IP+V+  I  +R    +PF  P  CP C S +VR 
Sbjct: 235 ----LITEKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPACDSELVRL 290

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
                     A RC     C AQ  E L HFVSR+A NI+GLG++ +   F        I
Sbjct: 291 EEE------VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFSQ----HLI 339

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           +  AD+F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F LGIRHVGA
Sbjct: 340 KDVADLFFLSKE------KLLELERMGEKSVTNLLASIQASKQNSLEKLLFGLGIRHVGA 393

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
           + A+SLA ++ +  N              D  +L  +  +G+ +A +IV ++ N      
Sbjct: 394 KAAKSLAIHFDTMDNL----------KVADKETLTSINDIGEKMADSIVTYFANEEVHDL 443

Query: 625 VEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
           +E L +          K             K +V TG L+K+ R+ A+  +  LG  VS 
Sbjct: 444 LEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIESLGGNVSG 503

Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +S+KTD+++ G + GSKL KA++L + I +EE  +  L    
Sbjct: 504 SVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEG 546


>gi|297571016|ref|YP_003696790.1| DNA ligase, NAD-dependent [Arcanobacterium haemolyticum DSM 20595]
 gi|296931363|gb|ADH92171.1| DNA ligase, NAD-dependent [Arcanobacterium haemolyticum DSM 20595]
          Length = 843

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 206/856 (24%), Positives = 349/856 (40%), Gaps = 174/856 (20%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + + A+     L  ++    + YY     +++D+ YDAL R   A+   FP L     P+
Sbjct: 8   NFDDAQVRWQELAPQLLDAQETYYSTGDQVMVDATYDALMRELRALEEEFPQL---WSPD 64

Query: 73  GPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
            P  K+G +     L  VTH     SL+ +++ ++L ++ T + +       + + FT E
Sbjct: 65  SPSTKVGAKPVRGGLPSVTHISRMYSLQDVFSRDELAEWFTGVSKELP----DGVSFTTE 120

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGE 190
            KIDG  + + Y  G    AA RGDG +GEDV+  +R I +IP  L  +  PE++E+RGE
Sbjct: 121 VKIDGLALNLTYRNGWLERAATRGDGVTGEDVTRNVRMIASIPDQLRGDRIPELVEIRGE 180

Query: 191 VYISKNDFLALN------------------------------------------------ 202
           V+     F   N                                                
Sbjct: 181 VFFPVAAFTQYNASVDARNAQIDARNERISAANREIAAQNRAIRAANASLPSDQQVAEIP 240

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG------KTSEIFAKGQY 255
            +      KP+ NPRNAASG +R+ +  +   R L+F  HGLG               Q 
Sbjct: 241 SKRREAHVKPFVNPRNAASGTMRQEDTGSVALRSLDFLAHGLGALDGADDVLRASLSSQE 300

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
            +       G PV+N     ++   I  + +  ++ R++LP++ DG+  K+D+ + Q++L
Sbjct: 301 GVYSMFIEWGLPVSNVTETHSSLAEINDFLDRFQNARTSLPFEFDGVAIKIDDRATQERL 360

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G   R PRW +++KF   +  TRLLDI +Q+GRTG +TP A +EPV + G+ ++ ATLHN
Sbjct: 361 GYTTRVPRWAVAYKFPPTEVQTRLLDIRVQVGRTGRVTPYAVMEPVFVDGSTVSQATLHN 420

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
              +             + +R+GD V++++AG++IP+VV  I +ER      F  P+ CP
Sbjct: 421 PTEVAR-----------KGVRIGDVVVIRKAGDIIPEVVGPIESERDGSEVEFVMPTHCP 469

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + +         +     RCT   +C AQ  +R+ H  SR A ++E LG +   +  
Sbjct: 470 DCGAPIAAI-----SEGDIDLRCTNQKSCPAQLTQRVVHIGSRGALDVEALGDESAVWLC 524

Query: 496 K-SEDPAFSIRIPADIFTLQRRQQTSTTKIENI--LGFGDVSVTNLYDSINKRRNISLER 552
              ++ A ++   A    L        T   ++      +  + + + +I    +I    
Sbjct: 525 NPDKNRADALTAFATGSALIVEDNAGKTHKLHLSEQARIERGIVDKHGAILDHHHIVAPE 584

Query: 553 FIFSLGIRHVGAEIARSLAKYY-----------------------LSYQNFAQEINNIIA 589
               LGI      I  + A+ +                        +++           
Sbjct: 585 LQRELGIPQPQHPILSTEAELFHLTADQARDVWIWQAEKKAGEPTGNWKYVRAAWTKPTW 644

Query: 590 HNNDDWLS--------------LIRVPL-----------------VGDIIAQAIVEFYQN 618
               D                 L  +                   VG + +QA+ + + +
Sbjct: 645 KGTGDAREISKETHPSKTLLKILDELEGAKHKDLWRKLVALNIRHVGPVASQALADTFGS 704

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEI-----------------ENKKL--------- 652
                  EA L+++S   G      SS +                               
Sbjct: 705 LD--AMREASLEDISAVEGVGPIIASSFLAWFGEEWHRQIVERWQDAGVTFKKEESDADV 762

Query: 653 ---------VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
                    V TG+LQ   R   +E +   G   +  +S+KT++++VG+N GSK  KA++
Sbjct: 763 PQTLAGLTIVATGSLQHFTRDGIKETIAAHGGKATGSVSKKTNLVVVGENAGSKATKAEE 822

Query: 704 LGVKIMNEEQFLFLLQ 719
           LG++I+NE QF  LL+
Sbjct: 823 LGIRILNEAQFQQLLE 838


>gi|224534829|ref|ZP_03675401.1| DNA ligase, NAD-dependent [Borrelia spielmanii A14S]
 gi|224514077|gb|EEF84399.1| DNA ligase, NAD-dependent [Borrelia spielmanii A14S]
          Length = 660

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 200/711 (28%), Positives = 344/711 (48%), Gaps = 59/711 (8%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            + ++E+++L++ I   D  YY  S P + D  YD    R   +   +P+       + P
Sbjct: 3   SKIQQEIANLKKLIRKWDKEYYVDSLPSVEDFVYDEHILRLQELESKYPEYKTL---DSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K G ++  +  +V HSIP LSL+K++++  L+ +I +I        +NS   ++EPKI
Sbjct: 60  TLKFGSDLLNTFKEVEHSIPILSLDKVYDLNLLKSWIDKI------DFNNSFNISVEPKI 113

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I + Y+ G    A  RG+G  G DV+  IR I  IP  L   +   + +RGEVYI+
Sbjct: 114 DGCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHIPFFLDEKV--DLVLRGEVYIT 171

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
           K +F  +N  +     KPY N RN ASGILRR++  ++  +           + +  K  
Sbjct: 172 KENFFKINKFL----EKPYTNSRNLASGILRRVDSKEVANFPLNVFIYDFLNAGLEFKTN 227

Query: 255 YEMLQKMRCLGFPVNNGVRQANT---FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
               +K++ LGF VN  +R  +       +++Y  ++   R++  Y+IDG+V KV +F+L
Sbjct: 228 NLATEKLKKLGFQVNPLIRFFDQKSSIKEVLNYIADITKKRNSFEYEIDGVVLKVSDFAL 287

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +++LG     P+W +++KF      +R+  I +Q+GR+G +TPVA ++ V + GA ITNA
Sbjct: 288 RERLGYTLHHPKWAMAYKFESLSGLSRVNSIIVQVGRSGKITPVANIDKVFVSGAFITNA 347

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           TLHN+DYI  +           ++ VGD V V R G+VIP V  +I          F   
Sbjct: 348 TLHNQDYIMSI-----------NLNVGDIVKVSRRGDVIPAVEMVINKFSTG---FFKIL 393

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C+  +V++          AH       C +  +ER+K+F S++  +IEG   + +
Sbjct: 394 DNCPACKMALVKEG---------AHFFCTNNNCPSVVVERIKYFCSKNCMDIEGFSDKTI 444

Query: 492 DFFFKSEDPAFSIR-IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
            F F+ +  +  I     D + L + +           GF +  V NL +SI   +    
Sbjct: 445 SFLFEKKFISSEIDLYIFDFYKLLKFK-----------GFKERKVNNLINSIEASKKKPF 493

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            + + S+GI+ +G    R L   +L+  N   ++  +    +  + +L+++  +G+ IA 
Sbjct: 494 SKLLLSIGIKELGENTIRLL---FLNNFNSFSKLFKLCQDRDFAFSTLLKIKGIGEKIAL 550

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            I+  + +   I       + +   +       + +  +  KK   TG+     R    +
Sbjct: 551 NIIGAFNDSIMINKF-KFFENLGFKMEECVLIDDKNKLLLGKKFCITGSFGDYSRSIVID 609

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            +   GA+    ++R  D +IVG   G+KL+KA  L +KIM+ E     L 
Sbjct: 610 KLENKGAIFQTCVTRSLDFLIVGKKAGTKLKKALNLNIKIMSFEDIKSYLD 660


>gi|325856672|ref|ZP_08172310.1| NAD-dependent DNA ligase OB-fold domain [Prevotella denticola CRIS
           18C-A]
 gi|325483386|gb|EGC86361.1| NAD-dependent DNA ligase OB-fold domain [Prevotella denticola CRIS
           18C-A]
          Length = 684

 Score =  363 bits (931), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 170/730 (23%), Positives = 290/730 (39%), Gaps = 76/730 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KE+ SL ++++   D YY   + ++ D E+DA   R   +            P+ P   +
Sbjct: 3   KEIQSLVKQLNAASDAYYNGREELMTDYEWDAAFDRLKKLEEQ----TGIVLPDSPTQNV 58

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
             +      K  H  P LSL K   +EDL ++                   L  K+DG  
Sbjct: 59  SADNVAG-KKEKHEFPALSLAKTKKVEDLARWAE------------GKPIWLSWKLDGLT 105

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +   Y+ G+      RGDGH G +++   RAI       ++     + +RGE  IS  DF
Sbjct: 106 LVATYDNGRLTKVVTRGDGHIGTNITHLSRAIEGFL--QTIPYRGHLVIRGEAVISYPDF 163

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEM 257
              N        + YANPRN ASG L   +  +   R+L++    L  T E        M
Sbjct: 164 EKFN----MESEEAYANPRNLASGSLTLKDINEVKQRHLHWIPFTLVYTEEEIGSWGERM 219

Query: 258 LQKMRCLGFPVNNGVR--------------QANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               R    PV+  +                ++   G        ++     PY +DGLV
Sbjct: 220 AWLERQGFHPVDRELISRPTAENIQAVIDSWSSRVTGQALNTRYPEADTQRFPYPVDGLV 279

Query: 304 YKVDEFSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
              D+ +             R   + K+ +++A T L  I+     +  ++PVA  +PV 
Sbjct: 280 ITYDDTAYAATGSVTGHHATRAGYAFKWQDERAETELDYIEWSCAAST-ISPVAVFQPVE 338

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +  A+L N    + L   GK          G ++ V +A ++IPKVV +      
Sbjct: 339 LEGTTVKRASLCNISECERLGIGGK----------GTKIAVIKANKIIPKVVSV-----V 383

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
                F  P  CP+C+S      +  +G             C A+QL++   FVS++  N
Sbjct: 384 ERMGIFHVPETCPVCRSATEVVESEASGTRTLH---CTNDHCPAKQLKKFGRFVSKEGVN 440

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GL +Q +  F         I   AD F L         ++  + GFGD SV+ L  ++
Sbjct: 441 IDGLSEQTVQKFIN----LGWICEYADFFHLNEH----ALQLRTMDGFGDRSVSKLLAAV 492

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K R++   R +F+L I  VG ++   L   Y   +       +              +P
Sbjct: 493 EKARSVEARRLLFALNIPLVGQDVCNRLLSAYPLKELIRTATESTDDDV------FSTIP 546

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G   +   V++ ++  N   ++ LL E++          S   +    V TG +   +
Sbjct: 547 GIGPEKSANFVQWMKDADNQPVLQHLLAELNVRQASSAPTGSG-CQGLTFVITGDVHHYK 605

Query: 663 -RHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R++ + Y+   G  V+  +S+ TD +I    ++   K +KA+ L + I++EE F+    
Sbjct: 606 NRNELKAYIESQGGKVTGSVSKSTDFLINNDVESTSGKNQKAKALSIPIISEEDFIDRFA 665

Query: 720 QYNTTLRIHD 729
           Q + +     
Sbjct: 666 QGSASGLPAQ 675


>gi|325002847|ref|ZP_08123959.1| NAD-dependent DNA ligase LigA [Pseudonocardia sp. P1]
          Length = 615

 Score =  362 bits (930), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 182/600 (30%), Positives = 296/600 (49%), Gaps = 33/600 (5%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + + + EQAR+  + L  E++ H   YY    P++ D ++D L      +  A P LA  
Sbjct: 1   MSSQTDEQARERHAQLAAEVADHQFRYYVLDAPVVSDGQFDELWHELLGLEDAHPGLA-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P  P  K+GG  +       H    LSL+  ++ +DLR +  R+ R   +    ++ +
Sbjct: 59  -TPQSPTQKVGGTFSTEFTAHDHLERMLSLDNAFSADDLRTWQERVTREVGE----NLHY 113

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEI 184
             E KIDG  + + YE G    A  RGDG +GED++  +R +  +P  L+       P +
Sbjct: 114 LCELKIDGLAVNLLYEGGTLTRALTRGDGRTGEDITLNMRTLGEVPVTLTGTDEFPVPAL 173

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +EVRGEVY    DF  LN  ++  G++P+ANPRN A+G LR+ +P    +R L    HG+
Sbjct: 174 VEVRGEVYFRLEDFDRLNASLVEAGKEPFANPRNTAAGSLRQKDPRVTASRNLRLICHGI 233

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           G+        Q +    +   G P++   R       +V +       R  + ++IDG+V
Sbjct: 234 GRRDGFTPVTQSQAYDALVAWGLPISPRTRVLRGIEKVVEFVEHWGEHRHDVEHEIDGVV 293

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVDE +LQ++LG  +R PRW I++K+  +QA+TRLLDI + +GRTG +TP A +EPV +
Sbjct: 294 VKVDEVALQRRLGATSRFPRWAIAYKYPPEQATTRLLDIRVNVGRTGRVTPFAVMEPVKV 353

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ +  ATLHN D ++            + + +GDRV++++AG+VIP+V+  + + R  
Sbjct: 354 AGSTVEMATLHNADEVRR-----------KGVLIGDRVVIRKAGDVIPEVLGPVTDVRDG 402

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
             + F  P+ CP C + +V+             RC    +C AQ  ERL H   R +F+I
Sbjct: 403 SERAFVMPTHCPECGTALVQQ-----KAGDVDRRCPNARSCPAQLRERLFHVAGRGSFDI 457

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           EGLG +           +  +    D+F+L   +   T    N  G   V+   L  ++ 
Sbjct: 458 EGLGYEAAVALL----TSGVLTDEGDVFSLTEDELLRTDLFRNQKGELTVNGRKLLTNLE 513

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             ++  L R +  L IRHVG   A++LA+ + S +   Q             + ++    
Sbjct: 514 AAKDRPLWRVLVGLSIRHVGPTAAQALAREFGSMEALEQAAARAKEDTEAAGVEIVS-DG 572


>gi|327313400|ref|YP_004328837.1| NAD-dependent DNA ligase domain-containing protein [Prevotella
           denticola F0289]
 gi|326944680|gb|AEA20565.1| NAD-dependent DNA ligase domain protein [Prevotella denticola
           F0289]
          Length = 684

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 172/730 (23%), Positives = 289/730 (39%), Gaps = 76/730 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KE+ SL ++++   D YY   + ++ D E+DA   R   +            P+ P   +
Sbjct: 3   KEIQSLVKQLNAASDAYYNGREELMTDYEWDAAFDRLKKLEEQ----TGIVLPDSPTQNV 58

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
             +      K  H  P LSL K   +EDL ++                   L  K+DG  
Sbjct: 59  SADNVAG-KKEKHEFPALSLAKTKKVEDLARWAE------------GKPIWLSWKLDGLT 105

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +   Y+ G+      RGDGH G +++   RAI  I + +       + +RGE  IS  DF
Sbjct: 106 LVATYDNGRLTKVVTRGDGHIGTNITHLSRAIEGILQTV--PYRGHLVIRGEAVISYPDF 163

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEM 257
              N        + YANPRN ASG L   +  +   R+L++    L  T E        M
Sbjct: 164 EKFN----MESEEEYANPRNLASGSLTLKDINEVKQRHLHWIPFTLVYTEEEIDSWGERM 219

Query: 258 LQKMRCL--------------GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               R                G         ++   G        ++     PY +DGLV
Sbjct: 220 AWLERQGFHPVDRELISRPTAGNIQAVIDSWSSRVTGQALNTRHPEADTQRFPYPVDGLV 279

Query: 304 YKVDEFSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
              D+ +             R   + K+ +++A T L  I+     +  ++PVA  +PV 
Sbjct: 280 ITYDDTAYAATGSVTGHHATRAGYAFKWQDERAETELDYIEWSCAAST-ISPVAVFQPVE 338

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +  A+L N    + L   GK          G ++ V +A ++IPKVV +      
Sbjct: 339 LEGTTVKRASLCNISECERLGIGGK----------GTKIAVIKANKIIPKVVSV-----V 383

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
                F  P  CP+C+S      +  +G             C A+QL++   FVS++  N
Sbjct: 384 ERMGIFHVPETCPVCRSATEVVESEASGTRTLH---CTNTHCPAKQLKKFGRFVSKEGVN 440

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GL +Q +  F         I   AD F L         ++  + GFGD SV+ L  ++
Sbjct: 441 IDGLSEQTVQKFIN----LGWICEYADFFHLNEH----ALQLRTMDGFGDRSVSKLLAAV 492

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K R++   R +F+L I  VG ++   L   Y   +       +              +P
Sbjct: 493 EKARSVEARRLLFALNIPLVGQDVCNRLLSAYPLKELIRTATESTDDDV------FSTIP 546

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G   + + V + ++  N   ++ LL E++          SS  +    V TG +   +
Sbjct: 547 GIGPEKSASFVRWMKDADNQPVLQHLLAELNVRQASSAPTGSS-CQGLTFVITGDVHHYK 605

Query: 663 -RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R++ + Y+   G  V+  +S+ TD +I  D  +   K +KA+ L + I++EE F+    
Sbjct: 606 NRNELKAYIESQGGKVTGSVSKSTDFLINNDVKSTSGKNQKAKALSIPIISEEDFIDHFA 665

Query: 720 QYNTTLRIHD 729
           Q + +     
Sbjct: 666 QGSASGLPAQ 675


>gi|203284458|ref|YP_002222198.1| DNA ligase [Borrelia duttonii Ly]
 gi|254781262|sp|B5RMA6|DNLJ_BORDL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|201083901|gb|ACH93492.1| DNA ligase [Borrelia duttonii Ly]
          Length = 669

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 192/702 (27%), Positives = 335/702 (47%), Gaps = 53/702 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +  + E+ SL   I   D  YY  S P + D  YD    R   + + +P+       + P
Sbjct: 3   KDIKDEILSLRDAIKKWDREYYVDSSPTVGDVTYDKALLRLQYLENRYPEYKTL---DSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K G ++     +V HS P LSL+K +++++L  ++ ++           +  + EPKI
Sbjct: 60  TLKFGSDLLNDFKEVEHSYPILSLDKAYDVKELLLWVEKMS-LEGSNLGFDMGISAEPKI 118

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I + Y+ G    A  RGDG  G +V   +R I  +P  +   +   + +RGE+YI+
Sbjct: 119 DGCSIVLYYKDGILEKALTRGDGRFGNNVIENVRTIKNVPLCIGERVE--LVLRGEIYIT 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
           K DFL +N  +       Y N RN  SGILRR+N  ++  +           S +     
Sbjct: 177 KKDFLKINHTL----DDSYINARNLTSGILRRINSREVVNFPLDIFVYDILYSSLELNTN 232

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           ++   K++  GF +N   +     +    I++Y  E++  R    Y+IDG+V KVD+F L
Sbjct: 233 HDAFDKLKHFGFKLNPFCKFFCGKNLGENIINYVKEIEEQRERFEYEIDGVVLKVDDFRL 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +  LG  +  P+W I++KF   +A ++++DI +Q+GR+G +TPVA +E V I GA IT+A
Sbjct: 293 RDVLGYTSHHPKWSIAYKFESLRAVSKVIDIVVQVGRSGKITPVANIEKVLIAGAFITSA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN+DYI  +            + V D V + R G+VIP V  ++      +   F  P
Sbjct: 353 SLHNQDYIDSI-----------GLNVKDVVAISRRGDVIPAVELVVEKLSVGN---FKIP 398

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           ++CP C+  ++++          AH     + C  + +  +K+F S+   NI GL ++ +
Sbjct: 399 NYCPSCKKSLIKEG---------AHLFCVNIHCPLKIMGHIKYFCSKKCMNIVGLSEKTI 449

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +F F        I    D++T    +         + GF    V  L  SI + +N   +
Sbjct: 450 EFLFNMN----FISSEIDLYTFDFDRLIG------LKGFNFKRVNKLKRSIEESKNRPFK 499

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + ++GI+ +G            +  N    I+ +   N +  + L+ +  +G+ IA  
Sbjct: 500 KLLLAMGIKDLGINTILL---LINNNLNSFDAISLLCQDNKNALVKLLDIKGIGERIAFN 556

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQE 668
           I+  + +   +       K +   +     N    SS +  KK   TG+  +  RH   +
Sbjct: 557 IIRAFNDKIILDKF-NFFKGLGFKMQEDSINCVVDSSFLFGKKFCITGSFDEYPRHVLID 615

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +T+ GA+ ++ +SR  D ++VG +PG KL+KA  LG+KI++
Sbjct: 616 KITKKGAIFNSSVSRYLDFLLVGKSPGLKLKKANNLGIKILS 657


>gi|325269002|ref|ZP_08135623.1| NAD-dependent DNA ligase LigA [Prevotella multiformis DSM 16608]
 gi|324988623|gb|EGC20585.1| NAD-dependent DNA ligase LigA [Prevotella multiformis DSM 16608]
          Length = 684

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 169/730 (23%), Positives = 283/730 (38%), Gaps = 76/730 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KE+  L   ++   D YY   + ++ D E+DA   R   +            P+ P   +
Sbjct: 3   KEIQRLVDRLNAASDAYYNGREELMTDYEWDAAFDRLKKLEEQ----TGIVLPDSPTQNV 58

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
             +      K  H  P LSL K   +EDL ++                   L  K+DG  
Sbjct: 59  SADNVAG-KKEKHEFPALSLAKTKKVEDLARWAE------------GKPVWLSWKLDGLT 105

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +   Y+ G+      RGDGH G +++   RAI  I + +       + +RGE  IS  DF
Sbjct: 106 LVATYDNGRLTKVVTRGDGHIGTNITYLSRAIEGILQTV--PYRGHLVIRGEAVISYPDF 163

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEM 257
              N        + YANPRN ASG L   +  +   R+L++    L  T          M
Sbjct: 164 EKFN----MESEEAYANPRNLASGSLTLKDINEVRQRHLHWIPFTLVYTEGEIGSWGERM 219

Query: 258 LQKMRCL--------------GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
               R                G         ++   G         +     PY +DGLV
Sbjct: 220 AWLERQGFHPVDRELISRPTAGNIQAVIDSWSSRVTGQALNTRHPAADPQCFPYPVDGLV 279

Query: 304 YKVDEFSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
              D+ +             R   + K+ +++A T L  I+     +  ++PVA  +PV 
Sbjct: 280 ITYDDTAYAATGSVTGHHATRAGYAFKWQDERAETELDHIEWSCAAST-ISPVAVFQPVE 338

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +  A+L N    + L   GK          G ++ V +A ++IPKVV +      
Sbjct: 339 LEGTTVKRASLCNISECERLGIGGK----------GTKIAVIKANKIIPKVVSV-----V 383

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
                F  P  CP+C+S      +  +G             C A+QL +   FVS++  N
Sbjct: 384 ERTGIFHVPETCPVCRSATEVVESEASGTRTLH---CTNAHCPAKQLRKFGRFVSKEGVN 440

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+GL +Q +  F         I   AD F L         ++  + GFGD SV+ L  ++
Sbjct: 441 IDGLSEQTVQKFIN----LGWICEYADFFHLNEH----ALQLRAMDGFGDRSVSKLLAAV 492

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K R++   R +F+L I  VG ++   L   Y   +       +              +P
Sbjct: 493 EKARSVEARRLLFALNIPLVGQDVCNRLLSAYPLKELIRTATESTDDDV------FSTIP 546

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            +G   + + V + ++  N   ++ LL E++          SS  +    V TG +   +
Sbjct: 547 GIGPEKSASFVRWMKDEDNQPVLQHLLAELNVRQASFAPTGSS-CQGLTFVITGDVHHYK 605

Query: 663 -RHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            R++ + Y+   G  V+  +S+ TD +I    ++   K +KA+ L + I++EE F+    
Sbjct: 606 NRNELKAYIESQGGKVTGSVSKSTDFLINNDVESTSGKNQKAKALSIPIISEEDFIDRFA 665

Query: 720 QYNTTLRIHD 729
           Q + +     
Sbjct: 666 QGSASGLPAQ 675


>gi|315924259|ref|ZP_07920483.1| NAD-dependent DNA ligase LigA [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622420|gb|EFV02377.1| NAD-dependent DNA ligase LigA [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 654

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 162/713 (22%), Positives = 289/713 (40%), Gaps = 70/713 (9%)

Query: 12  LSIEQ--ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           +++ +    ++++ L  +I+   + YY   + ++ + E+DAL      +       A   
Sbjct: 1   MTMAELSINQQMADLIGKINAASEAYYGGREELMSNYEWDALFDALIRLEKK----AGYA 56

Query: 70  DPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            P+ P  ++G   + +   KV H  P LSL K   + DL K+                  
Sbjct: 57  LPDSPTQRVGTSSSEASGEKVAHEYPMLSLAKTKTVADLVKWAD------------GRDV 104

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            L  K+DG  +   Y++G+      RG+G  G D++    AI  +P  +S   P  + +R
Sbjct: 105 WLSLKLDGLTLVATYDEGRLNRLVTRGNGSVGTDITHLASAIDGVPIQISE--PGHLVIR 162

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTS 247
           GE  I+  DF            + YANPRN ASG L   +  +   R+L +    L    
Sbjct: 163 GEALITYKDFETFL----LESEETYANPRNLASGSLSLKDIDEVRRRHLQWIPFTLVHLD 218

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                     +  +  LGF      R      G        +  +  +PY +DGLV   D
Sbjct: 219 REMISWG-ARMDYLASLGFHPVERERLQADTLGDGIARWSEQISKGAIPYPVDGLVMTYD 277

Query: 308 EFSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +    +          R  ++ K+ +  A + L  I+     +  +TPVA  EPV + G 
Sbjct: 278 DTDYAQTGSVTGHHATRAGLAFKWQDTSADSILTGIEWSCAAST-ITPVAIFEPVALEGT 336

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++  A+LHN    + L   G           G +V V +A ++IPKV+            
Sbjct: 337 IVKRASLHNISECRRLGIGGA----------GTKVTVIKANKIIPKVIAA------KGEG 380

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  P  CP+C +     ++    + +    C+     +    +  +   SR   +I+GL
Sbjct: 381 NFVIPEACPVCSAPTAVAVSSSGAETL---HCSNPECAAKHLQKFNRFV-SRYGMDIDGL 436

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
             Q ++ F         I+  +DI+ L +        I  + GFG+ SV NL  +I K R
Sbjct: 437 SIQTMNKFINQ----GFIKSFSDIYQLAKY----FDAIREMDGFGEKSVANLAAAIEKSR 488

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            +  E  +F+L I  +G +  + L                 + +  +       +  +G 
Sbjct: 489 RVKPENLLFALCIPMIGVDAGKRLINAIG---------LEGVLNRLNANEDFDDIEGIGP 539

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHK 665
             + +++ +Y + +N   +  LL E+   +   ++N S   E    V TG +Q    R  
Sbjct: 540 EKSDSLLAWYADEKNASDLTRLLAELQVDMEAKQRN-SGRCEGLTFVITGKVQHYQNRDA 598

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLF 716
            + YV   G  VS  +S+KTD ++    ++  +K  +A+ LGV I++E +F+ 
Sbjct: 599 FKAYVESQGGHVSGSVSKKTDYLVNNDVESTSAKNRRARDLGVPIISEAEFVE 651


>gi|281424041|ref|ZP_06254954.1| putative DNA ligase [Prevotella oris F0302]
 gi|281401824|gb|EFB32655.1| putative DNA ligase [Prevotella oris F0302]
          Length = 665

 Score =  361 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 168/714 (23%), Positives = 294/714 (41%), Gaps = 61/714 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ ++ RK +  L   ++   D YY     ++ D E+DA+  +   +          + P
Sbjct: 1   MAEDKLRK-MRELVDLLNRAADAYYNGQGELMTDYEWDAMFDQVKQLETE----TGQKFP 55

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P N++  +      K  H  P LSL K     +L K+                   L 
Sbjct: 56  DSPTNRVSEDNITG-QKEEHEFPALSLAKTKQPTELAKWAE------------GRPIWLS 102

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  + + ++ GK      RG+GH G +++    AI  IP+   +     + VRGE 
Sbjct: 103 WKLDGLTLVVTFDNGKLTKVVTRGNGHIGTNITHLANAIQGIPQE--IKSKGHVVVRGEC 160

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
            IS  DF   N        + YANPRN ASG L   +  +   R+LN+    L    E  
Sbjct: 161 VISYADFEQFN----IESDEEYANPRNLASGSLTLKDVNEVRQRHLNWIPFTLVYAEEPI 216

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQ---ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                  +  +   G       +           V      K      PY +DGLV   D
Sbjct: 217 NSWG-ARMDWLEQNGMKAVEREKIEVPTLQNIEQVIAKWTEKVTGKVNPYPVDGLVITYD 275

Query: 308 EFSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           + S  +          R   + K+ ++ A T L  I+        ++PVA   PV + G 
Sbjct: 276 DTSFAQTGSVTGHHATRAGYAFKWQDESADTVLDHIEWSCAA-NTISPVAVFTPVELEGT 334

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +  A+L N    + L   G+          G ++ V +A ++IPKV+ +     +    
Sbjct: 335 TVKRASLCNISECERLGIGGQ----------GTKLSVIKANKIIPKVIRV-----NEKIG 379

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
               P  CP+C S+    ++  T        CT G   + Q   +   FVS++  NI+G+
Sbjct: 380 DLKIPETCPVCGSKTQITMS--TASETKTLHCTNGKCPAKQL-RKFARFVSKEGVNIDGM 436

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            +Q +  F         ++  AD++ L+        ++  + GFG+ SV NL  +I K R
Sbjct: 437 SEQTVAKFIN----LGWVKEYADLYQLKNH----ALELSFMEGFGEKSVRNLLHAIEKAR 488

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           ++    F+++L I   G ++ + L   Y  ++                      +  +G 
Sbjct: 489 DVEAHHFLYALSIPLCGQDVCKRLLSAYPLHEIIDIASGKSDKTVPGVEAPFSLIAGIGP 548

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHK 665
             +  IV+++ +  N   VE LL++V  S   +E +  +  +    V TG +   + R++
Sbjct: 549 EKSNQIVKWFHDEENRMMVEKLLRQVHISQENNEASGEN-CKGLTFVVTGDVNHYKNRNE 607

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFL 717
            + Y+   G  V+  +S+ T+ +I  D  +  SK +KAQQLG+ I++EE+F+ L
Sbjct: 608 LKAYIESQGGKVTGSVSKSTNYLINNDVTSASSKNQKAQQLGIPIISEEEFINL 661


>gi|213618983|ref|ZP_03372809.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 544

 Score =  361 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 199/577 (34%), Positives = 314/577 (54%), Gaps = 42/577 (7%)

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K   ++ + 
Sbjct: 2   TPDSPTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSTENVIWC 59

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVR 188
            E K+DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVR
Sbjct: 60  CELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVR 119

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-T 246
           GEV++ +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G   
Sbjct: 120 GEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILE 179

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                      L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV
Sbjct: 180 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 239

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G 
Sbjct: 240 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 299

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           L++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +
Sbjct: 300 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 348

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  FP+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+
Sbjct: 349 PIVFPTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 402

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G + +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K +
Sbjct: 403 GDKIIDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAK 452

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             +  RF+++LGIR VG   A  LA Y+ + +                   L +VP VG 
Sbjct: 453 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAAT----------IDELQKVPDVGI 502

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
           ++A  +  F+    N   +  LL E          N 
Sbjct: 503 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINA 539


>gi|284031885|ref|YP_003381816.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836]
 gi|283811178|gb|ADB33017.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836]
          Length = 671

 Score =  361 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 200/710 (28%), Positives = 322/710 (45%), Gaps = 77/710 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + + +L  +I    D YY+   P + D+EYDA++    A+  A P+LA   DPN PL+++
Sbjct: 12  ERIETLADQIVQLRDAYYR-GAPAVADAEYDAIEDELRALIAAHPELA--PDPN-PLDQV 67

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G    L    V HS P LSLEK    E +  F  R                + PK+DG  
Sbjct: 68  GAPAVLH-APVRHSRPMLSLEKATRPEQVEAFFNR---------FPGRSVVVMPKLDGLS 117

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + YE G+   A  RGDG +G+DV+  +RA+           P  +EVRGE  + ++ F
Sbjct: 118 LALVYEDGQLARAITRGDGTTGDDVTPLVRALADGVPAKIDA-PGRVEVRGEAVMLRSTF 176

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEM 257
            A N        KP  NPRNAA+G LR  +P     R L F    L            ++
Sbjct: 177 AAYNAA---HPDKPLINPRNAAAGTLRAKDPATVAERRLQFLAFDL---HTDPDSTDSDL 230

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
            + +R LGF     +R  +      +    ++  R+ L YD+DG V ++ +       G 
Sbjct: 231 DRALRTLGF-AVADMRHCDDAAAAQAVITTIEQQRNDLDYDLDGAVLRLADRDAFAAAGT 289

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
           R+ SPR  +++KFA ++ +T L D+   +G+TG + PVA LEPV +GG  +T ATL N++
Sbjct: 290 RSSSPRGALAYKFAAEEKTTVLADVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATLANQE 349

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI-IVNERHPDAQPFSFPSFCPI 436
            I+            R I++GD VLV+RAG+VIP V  +   + R    Q    P+ CP 
Sbjct: 350 VIR-----------ARGIKIGDTVLVRRAGDVIPFVAGVLDASRRTGAEQDIVPPTNCPS 398

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C   +    N +             ++C AQ + RL H+ SR A +I+ +G   ++   +
Sbjct: 399 CGQPLTEQGNSRE-------LFCTNVSCPAQTVRRLIHWASRAAADIDAIGGVWIERLAE 451

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
               A  +  P+D + L +       K+      G+VS   + +SI+  R + L R +  
Sbjct: 452 ----AGILEHPSDFYHLTKE------KLLEFDRIGEVSAARMIESIDASRQVGLRRALIG 501

Query: 557 LGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           L +       A  L +  + S +  A                L+ V  +G  +A ++VE 
Sbjct: 502 LAVPMASEGTAARLCRAGFGSLEEVADAGE----------EGLVAVEDIGPKVAASLVEH 551

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTL------QKIQRH 664
               R    +E L           E         + +  K +V TG +      +K+ R 
Sbjct: 552 LS--RLRPELERLRAAGVSLDVLEEDLPPVVAAGAPLAGKTVVVTGAISDPRSGEKVARP 609

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQ 713
             Q      GA +++ +S  TD +I G + G +KL KA++LGV+++++ +
Sbjct: 610 AFQRLCESAGATIASSVSASTDYLITGADVGAAKLTKAEKLGVEVVDQSE 659


>gi|282864620|ref|ZP_06273675.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE]
 gi|282560559|gb|EFB66106.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE]
          Length = 709

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 193/718 (26%), Positives = 316/718 (44%), Gaps = 91/718 (12%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
            + ++ D  YD L R   A     P    +     P  K+ G   +    V H++P LSL
Sbjct: 40  GESLLDDDAYDRLARGIAAYEAEHPQEVLAA---SPTGKVAGGAAVG--DVPHTVPMLSL 94

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E    +   + R   +       +++EPK+DG  +  RY++G+      RGDG 
Sbjct: 95  DNVFSAEQFVTWTASVERRIGRPV---AAWSVEPKLDGLAVAARYQQGRLDRLITRGDGT 151

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDVS  I  +  +P  L+   P  +EVRGE+ ++   F A N    A G  P+ANPRN
Sbjct: 152 AGEDVSHAIGTVLGLPERLNE--PATLEVRGEILMTDEQFDAANAARTAHGAAPFANPRN 209

Query: 219 AASGILRRLNPTDITRYLNFFVHGLGKT------SEIFAKGQYEMLQKMRCLGFPVNNGV 272
            A+G LR  +         F    L           +      E+L+ +  LG       
Sbjct: 210 GAAGTLRAKDRPYRVEMTFFAYAALPLPGSGTSAETLTGLPHSEVLRHVAGLGVRTAADT 269

Query: 273 ----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
               R A T   + +   ++   R+TLP+ IDG+V K D  + Q+  G   R+PRW I++
Sbjct: 270 AVAPRTAGTVEEVQAGVEDIAGQRATLPFGIDGIVIKADLAADQRDAGTGTRAPRWAIAY 329

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           K    +  TRLL ++  +GRTGI+ P A LEPV I G+ +  ATLHN   I         
Sbjct: 330 KLPAVEKVTRLLGVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADITR------- 382

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
               RD+R+GD+V+V +AG++IP++   + + R  + +P  FP  CP C S +       
Sbjct: 383 ----RDLRLGDQVMVYKAGDIIPRIEAPVAHLRTGEERPIEFPQSCPQCGSEIDTSEQ-- 436

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508
                   RC  G  C  + +  + +   RD  +IEGLG  ++         A  +   A
Sbjct: 437 ------RWRCVRGRDC--RLVASVSYAAGRDQLDIEGLGATRVVQLVD----AGLVADFA 484

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           D+FTL+R Q         +   G+ S  NL  ++   R+  L R   +LG+R  G  ++R
Sbjct: 485 DLFTLEREQLLG------LERMGETSTDNLLAAVETARSRPLSRVFCALGVRGTGRSMSR 538

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            +A+++ +    A            D  +L RV  +G   A A+V   +       +  L
Sbjct: 539 RIARHFATMDRIAAA----------DTEALQRVDGIGKEKAAAVVA--ELAELAPLIAKL 586

Query: 629 LKEVSPSIGRHEKN------------------------VSSEIENKKLVFTG----TLQK 660
           +                                         ++   +V TG     L+K
Sbjct: 587 VAAGVNMTEPGATPPPDPGTEADEERAGAEGVSEGAGGTGLPLDAMTVVVTGAMTGVLEK 646

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + R++  E + + G   S+ +S++T +++ G+  GSK  KA+ LGV+I   ++F  L+
Sbjct: 647 LSRNEMNELIERAGGKASSSVSKRTSLLVAGEKAGSKRTKAEGLGVRIATPDEFAELV 704


>gi|299142918|ref|ZP_07036045.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Prevotella
           oris C735]
 gi|298575647|gb|EFI47526.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Prevotella
           oris C735]
          Length = 657

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 166/705 (23%), Positives = 286/705 (40%), Gaps = 60/705 (8%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L   ++   D YY     ++ D E+DA+  +   +          + P+ P N++  
Sbjct: 1   MRELIDLLNRAADAYYNGQGELMTDYEWDAMFDQVKQLETE----TGQKFPDSPTNRVSE 56

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +      K  H  P LSL K     +L K+                   L  K+DG  + 
Sbjct: 57  DNITG-QKEEHEFPALSLAKTKQPTELAKWAE------------GRPIWLSWKLDGLTLV 103

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + ++ GK      RG+GH G +++    AI  IP+   +     + VRGE  IS  DF  
Sbjct: 104 VTFDNGKLTKVVTRGNGHIGTNITHLANAIQGIPQE--IKSKGHVVVRGECVISYADFEQ 161

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
            N        + YANPRN ASG L   +  +   R+LN+    L    E         + 
Sbjct: 162 FN----IESDEEYANPRNLASGSLTLKDVNEVRQRHLNWIPFTLVYAEEPINSWG-ARMD 216

Query: 260 KMRCLGFPVNNGVRQ---ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            +   G       +           V      K      PY +DGLV   D+ +  +   
Sbjct: 217 WLEQNGMKAVEREKIEVPTLQNIEQVIAKWTEKVTGKVNPYPVDGLVITYDDTTFAQTGS 276

Query: 317 ERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
                  R   + K+ ++ A T L  I+        ++PVA   PV + G  +  A+L N
Sbjct: 277 VTGHHATRAGYAFKWQDESADTVLDHIEWSCAA-NTISPVAVFTPVELEGTTVKRASLCN 335

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
               + L   G+          G ++ V +A ++IPKV+ +     +        P  CP
Sbjct: 336 ISECERLGIGGQ----------GTKLSVIKANKIIPKVIRV-----NEKIGDLKIPEACP 380

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
           +C S+    ++  T        CT G   + Q   +   FVS++  NI+G+ +Q +  F 
Sbjct: 381 VCGSKTQITMS--TASETKTLHCTNGKCPAKQL-RKFARFVSKEGVNIDGMSEQTVAKFI 437

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   ++  AD++ L+        ++  + GFG  SV NL  +I K R++    F++
Sbjct: 438 N----LGWVKEYADLYQLKNH----ALELSFMEGFGKKSVRNLLHAIEKARDVEAHHFLY 489

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +L I   G ++ + L   Y  Y+                      +  +G   +  IV++
Sbjct: 490 ALSIPLCGQDVCKRLLSAYPLYEIIDIASGKSDKTVPGVEAPFSLIAGIGPEKSNQIVKW 549

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLG 674
           + +  N   VE LL++V  S    E +  +  +    V TG +   + R++ + Y+   G
Sbjct: 550 FHDEENRMMVEKLLRQVHISQENKEASGEN-CKGLTFVVTGDVNHYKNRNELKAYIESQG 608

Query: 675 AVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFL 717
             V+  +S+ T+ +I  D  +  SK +KAQQLG+ I++EE+F+ L
Sbjct: 609 GKVTGSVSKSTNYLINNDVTSASSKNQKAQQLGIPIISEEEFINL 653


>gi|149928191|ref|ZP_01916436.1| DNA ligase (NAD+) [Limnobacter sp. MED105]
 gi|149823082|gb|EDM82322.1| DNA ligase (NAD+) [Limnobacter sp. MED105]
          Length = 597

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 214/572 (37%), Positives = 323/572 (56%), Gaps = 34/572 (5%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L   ++  +  YY    P + DSEYD + R    I +  P+L ++   + P  ++GG
Sbjct: 27  MRRLIDLLNRWEYAYYVLDAPEVPDSEYDKVYRSLQQIENNHPELIQN---DSPTQRVGG 83

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +      +V H +P LSL   +   D+  F  R+        D +I + ++PK DG  I+
Sbjct: 84  KPADGFEQVRHRVPMLSLGNAFEDSDVLAFDRRVKELADLPIDTTIAYAVDPKFDGLAIS 143

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFL 199
           I Y  G F  A  RGDG  GEDVSA ++ I ++P  L  + +P  +E+RGE++++K DFL
Sbjct: 144 IHYTNGMFDQAITRGDGTVGEDVSANVKTIRSLPLKLKGSVVPAHLEIRGEIFMTKKDFL 203

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHG--LGKTSEIFAKGQYE 256
            +N     +G K +ANPRNAA+G +R+L+P         F+ +G  L +      K Q  
Sbjct: 204 QMNQRQAELGLKVFANPRNAAAGTIRQLDPKVAASRPLRFYCYGAALEREQLRELKSQSA 263

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           M++ +  LG PV+   + A    G++S+Y  +   RSTLP++IDG+VYKVD F LQ QLG
Sbjct: 264 MMKWLAALGLPVSELSQTATGAEGLLSFYRSVGGRRSTLPFEIDGVVYKVDSFDLQDQLG 323

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A++PR+ ++HKF   +  +RLL+I++Q+GRTG +TPVA+LEPV +GG ++++ATLHN 
Sbjct: 324 YVAKAPRFAVAHKFPPDEVLSRLLNIEVQVGRTGSITPVAKLEPVKVGGVVVSSATLHNL 383

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I+            +D+RVGD+VLV+RAG+VIP+V+    N+R P +  F  P+ CPI
Sbjct: 384 DEIQR-----------KDLRVGDQVLVRRAGDVIPEVLPFPGNQRSPVSSAFVMPTHCPI 432

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S V ++         AA RCTGGL C AQ  + + HF  R A +IEGLG + ++    
Sbjct: 433 CNSLVRKEEGE------AAFRCTGGLVCKAQLTQSIIHFAHRRAIDIEGLGSKLVEVLVD 486

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     ++ PAD+F L+         +  +   GD S  NL DSI+K +  +  RF+F 
Sbjct: 487 KE----WVKTPADLFRLE------FDALVQLERMGDKSARNLLDSIDKAKQTTFGRFLFG 536

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
           LGIRHVG   AR LA Y+ + +         +
Sbjct: 537 LGIRHVGEATARDLAAYFKNVERLMNASEEEL 568


>gi|285018504|ref|YP_003376215.1| NAD-dependent_DNA_ligase [Xanthomonas albilineans GPE PC73]
 gi|283473722|emb|CBA16225.1| putative nad-dependent_dna_ligase protein [Xanthomonas albilineans]
          Length = 838

 Score =  359 bits (922), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 228/688 (33%), Positives = 346/688 (50%), Gaps = 104/688 (15%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ +  L  ++   +  YY  + P I D+EYDAL R  +A+  A P LAR    + P   
Sbjct: 8   QQRVVELRSQLEDANHRYYVLADPAIPDAEYDALMRELEALESAHPALAR---EDSPTRS 64

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNI-------------EDLRKFITRIYRFWQKKDDN 124
           +G   +    +V H+IP LSL   +                ++  F  RI R  +     
Sbjct: 65  VGARPDSGFPEVRHAIPMLSLANAFETPSVAEDADDRIRFAEVADFERRIERELELAAPV 124

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NI 181
              F++EPK+DG  I++RYE G FV  A RGDG +GEDV+A +R + ++P  L      +
Sbjct: 125 ---FSVEPKLDGLAISLRYEDGVFVQGATRGDGSTGEDVTANLRQVRSVPLRLRELGMPM 181

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240
           P ++EVRGE+Y+ +  F A N   +    K  ANPRN A+G LR+L+P     R L FF 
Sbjct: 182 PAVLEVRGEIYMPRAAFAAWNARALERNEKLLANPRNGAAGSLRQLDPAVTRRRPLAFFA 241

Query: 241 HGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           + +G+   +   +   + LQ +R  GFPV      A  F G+++Y+  + + R  LPYDI
Sbjct: 242 YSVGEVRGLELPETHSQTLQLLRRYGFPVAPEADTATGFDGLIAYFRRIGARRDALPYDI 301

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+VYK+D++  Q  +G  AR+PRW ++HKF  ++ ST L  I++QIGRTG  TPVARLE
Sbjct: 302 DGVVYKLDDYDQQTAMGFVARAPRWALAHKFPAQEQSTVLRAIEVQIGRTGAATPVARLE 361

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G ++TNATLHN D I  L           D+RVGD V+V+RAG+VIP+VV +I  
Sbjct: 362 PVQVAGVIVTNATLHNADQIARL-----------DVRVGDTVIVRRAGDVIPEVVRVIEA 410

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R P   P++ P+ CP+C S +V++ +          RC+GGLAC+AQ+ E ++HF SR 
Sbjct: 411 RRPPGTLPWTMPAVCPVCGSELVKEDD------AVTWRCSGGLACAAQRKEAVRHFASRR 464

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI--------------- 524
           A +IEGLG++Q D   +       ++  AD++ L+                         
Sbjct: 465 ALDIEGLGERQADALVE----FGFVQSLADLYALRVEDLVRMKAALDAASSADLLQAVEE 520

Query: 525 ----------------ENILGFGD------------------VSVTNLYDSINKRRNISL 550
                           + + G+                        NL   I+  R  +L
Sbjct: 521 SKGALVLDAAGYAALAQQVPGWRHADFLRRHLAVDLGGKLATKWAENLLAGIDASRATTL 580

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RF+F+LGI H+G   A++LA +  S   F +    ++         L  +P +G  +A+
Sbjct: 581 SRFLFALGIPHLGETTAKALAHWLGSL-AFVRSTPAVL---------LQALPDIGGEVAR 630

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR 638
           AI  F++ P N   V+AL+         
Sbjct: 631 AIATFFEQPGNAAVVDALIAAGIGFADE 658



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 75/175 (42%), Gaps = 14/175 (8%)

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
              + +L +  +G + A+ LA  Y +     +   +                        
Sbjct: 672 AHLLSTLPVDKLGGKSAQRLAATYGTLDALLRANESGWTGAGLSAAGAAN---------- 721

Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
            +V +  +P     +   EA ++ +  +  +        ++ +  V TG+L ++ R  A+
Sbjct: 722 -LVAYLADPAQRQGLLDAEAAMQRLLDAAPQQPTRHGGPLDGQTAVLTGSLTQLTRDAAK 780

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             +  LGA V+  +S+KT  ++ G   GSKL+KAQ+LGV + +E Q L  L ++ 
Sbjct: 781 ARLEALGAKVAGSVSKKTSFVVAGSEAGSKLDKAQELGVVVWDERQLLTFLAEHE 835


>gi|332141274|ref|YP_004427012.1| DNA ligase, NAD-dependent [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551296|gb|AEA98014.1| DNA ligase, NAD-dependent [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 517

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 196/550 (35%), Positives = 297/550 (54%), Gaps = 42/550 (7%)

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237
              P+ +EVRGEV++ +  F  LN+     G K +ANPRNAA+G LR+L+      R L 
Sbjct: 5   DAHPDRVEVRGEVFMPREGFAKLNEHQKNAGGKVFANPRNAAAGSLRQLDSKITAKRPLM 64

Query: 238 FFVHGLGKTSEIFAK---GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           F+ + LG              E L ++   G P+   +  A    G + YY+ +   R  
Sbjct: 65  FYAYSLGVVQPDNFTLPTTHSERLSQLGKWGLPLCPDIDTAEGGRGCLDYYHHILEKRDN 124

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LPYDIDG+V+KV+   LQ  LG  AR+PRW I+ KF  ++  T+LLD++ Q+GRTG +TP
Sbjct: 125 LPYDIDGVVFKVNRIDLQAALGFVARAPRWAIAQKFPAQEEVTKLLDVEFQVGRTGAITP 184

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARLEPV +GG  ++NATLHN+D I  L            ++VGD V+++RAG+VIP+VV
Sbjct: 185 VARLEPVFVGGVTVSNATLHNQDEITRL-----------GVKVGDTVVIRRAGDVIPQVV 233

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
            ++  +R       +FPS CP+C S+V +  +       A  RCTGGL C+AQ+ + LKH
Sbjct: 234 SVVDTKRTGSETDIAFPSQCPVCGSQVEKLEDE------AVARCTGGLICAAQRKQALKH 287

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           F SR AF+I+GLG + +D        A  +  PAD FTL      S   +  +    + S
Sbjct: 288 FASRKAFDIDGLGDKLVDQLVD----ADLVHSPADFFTL------SLGDVVGLERMAEKS 337

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
            + L  S+   +  +L +F+++LGIR VG   A +LA ++ +                  
Sbjct: 338 ASKLLSSLEASKQTTLAKFLYALGIREVGEATAANLAAHFETLDAIRDA----------S 387

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLV 653
             +L+ V  VG+I+A  I  F+    N   ++ALLKE        + +  +  +E K  V
Sbjct: 388 IEALVEVQDVGEIVATHIFNFFNESHNTDVIDALLKEGINWPAIEKPDADNLPLEGKTCV 447

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713
            TGTL ++ R  A+  +  LGA V+  +S+ TD ++ G+  GSKL KAQ+L V++ +E +
Sbjct: 448 ITGTLSEMGRSDAKARLQLLGAKVAGSVSKNTDFLVAGEKAGSKLTKAQELDVEVWDEAK 507

Query: 714 FLFLLQQYNT 723
            +  L +   
Sbjct: 508 LIAFLAENEK 517


>gi|302668858|ref|YP_003832683.1| NAD-dependent DNA ligase LigA2 [Butyrivibrio proteoclasticus B316]
 gi|302397198|gb|ADL36101.1| NAD-dependent DNA ligase LigA2 [Butyrivibrio proteoclasticus B316]
          Length = 745

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 192/753 (25%), Positives = 315/753 (41%), Gaps = 76/753 (10%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           AL  + ++K+   L+ ++      YY    P + D EYD L  +  A     P       
Sbjct: 9   ALGEQLSKKDYEKLKNKLMDLARAYYDDDAPKVSDHEYDMLMVQLKACEKKNPSWVTD-- 66

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            +     IGG  +    KVTH +P LS+E ++N E +++++  +       +     FT+
Sbjct: 67  -DSISQVIGGTASSKFSKVTHDVPMLSIEDVFNKESVKEWMENVK-----TNYPDAGFTV 120

Query: 131 EPKIDGTMITIRYEKG-------------KFVYAALRGDGHSGEDVSACIRAIPTIPRV- 176
           E KIDG   T+RY+                 V A  RG+G  GEDV+  +  IP +P+  
Sbjct: 121 EEKIDGLSCTLRYKTNDTEPYDEANCVCYDLVLAETRGNGIIGEDVTENVLQIPDVPKRL 180

Query: 177 --LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT- 233
                   +  +VRGE+Y+   +F   N++ +  GRKP ANPRN A+G LR+     +  
Sbjct: 181 FLSHDLYGDSFQVRGEIYMKHENFEKFNEKEVKAGRKPAANPRNLAAGTLRQKEAVLVKE 240

Query: 234 ---RYLNFFVHGL-GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289
                  F V  + G T +I  + QYE +Q ++  GF                       
Sbjct: 241 RGLNMFIFRVQKVEGATRDILTRTQYEAMQILKKDGFKTAICGFARTFEEVEALIDEYET 300

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
                  YDIDG V K+D    Q      ++     I++K+ +K+   R+ DID+ +GRT
Sbjct: 301 HKDGRFGYDIDGAVVKIDVIEHQDDFSTSSKYIPGHIAYKYPQKEQKARVTDIDVALGRT 360

Query: 350 GILTPVARLE------PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLV 403
           G LT  A +       P+ + G  ++  TLHN DYI+            R I +G    +
Sbjct: 361 GKLTFTAVVCDDETGEPLQMCGTSVSRVTLHNMDYIR-----------ERHIGIGGVYGI 409

Query: 404 KRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463
            ++GE+IPK+ + I        + F  P+ CP C S +V         L +         
Sbjct: 410 FKSGEIIPKLTETIYK---EPERLFEVPTVCPFCGSPIVN--------LGSTDYFCSNDN 458

Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED-------PAFSIRIPADIFTLQRR 516
           C  + +++L +FV RD  NIEGL  + + F               +          +  +
Sbjct: 459 CKERAIQQLDYFVGRDQMNIEGLSIESIRFLDSKGYINASAPASLYFQAEKWHEDGVFAK 518

Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                  +EN  G+ + SV NL  +I+K R     R + S G+ +VG   A+ L K    
Sbjct: 519 LGKPEIHLENEDGWSEKSVENLVTAIDKSRTSDFIRVLASFGLPNVGHGQAKLLKKAIEK 578

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN---------PRNICAVEA 627
           +          +           ++   GD+I + + +F Q+                  
Sbjct: 579 FDGKEANYFGRLLEMYKAGYDFSKIEGFGDVIKKTLNDFCQSILDLGIPDKDHTAQKYVD 638

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTD 686
           LL  V       +   +S +E    V TG+ +  + R   ++ +  LG  VS  +S KT 
Sbjct: 639 LLDAVDILFIEEKAAGASSLEGLTFVVTGSFENYKPRKLLEDEIESLGGKVSGTVSAKTS 698

Query: 687 IIIVGDNPGS--KLEKAQQLGVKIMNEEQFLFL 717
            +I  D   S  K +KA++LGVKI++E+++  +
Sbjct: 699 YLINNDTTSSSGKNKKAKELGVKIISEQEYRAM 731


>gi|326445394|ref|ZP_08220128.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 687

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 187/738 (25%), Positives = 298/738 (40%), Gaps = 76/738 (10%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
            L  ++A S   +R E  +  Q +      YY      + D+ YD L+R   A     P 
Sbjct: 3   TLPAVQAQSAVSSRTEYEAALQRLRDASRAYYGDGDSPLDDATYDQLRRSVLAWEQENP- 61

Query: 65  LARSEDPNGPLNKI--GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
                 P+ P   +  G         V H+ P LSL+ + + E L  +   + R      
Sbjct: 62  --AEVSPDSPTGLVADGAAPVGD---VAHTTPLLSLDNVSDAEGLTAWGLSVQRRLGHVP 116

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
                FT+EPK+DG  +  RY  G+ V    RG G  GEDVS  I  I  +P  L+L + 
Sbjct: 117 QGG--FTVEPKLDGAAVAARYRGGRLVQVITRGVGSHGEDVSHVIGQIDGLPEQLTLPV- 173

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHG 242
             +EVRGEV  ++  F   N+   A   + +ANPRN  +G LR          + F+ +G
Sbjct: 174 -TVEVRGEVAFTQEQFETANEVRAAHNEQVFANPRNGVAGTLRA-KGRSYQLRMTFWAYG 231

Query: 243 LGK----TSEIFAKGQYEMLQKMRCLGFPVNNGV----RQANTFHGIVSYYNEMKSIRST 294
             +              E L  +  +G                        + + ++R+ 
Sbjct: 232 AVELDSVAYLPAGATHAETLAAVAAVGIQTTADSPAGLHVVADLASAQQRVDAIAAMRAG 291

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LP  IDG+V K+D+ + Q   G  +R P W I+ K    +  T L D+  ++GRTG+L P
Sbjct: 292 LPVGIDGVVVKLDDATEQAAAGVGSRFPHWAIAFKLPAVERQTVLEDVVWEVGRTGVLAP 351

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A L PV I G+ +T ATLHN   I+            RD+ +GD V V +AG++IP+V 
Sbjct: 352 TAILAPVEIDGSTVTRATLHNPADIRR-----------RDLHIGDAVTVFKAGDIIPRVQ 400

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +   R   A+    P  CP C   +         K     RC      +      + +
Sbjct: 401 GPVAQLRPEGAREVPLPEVCPNCGGEIN--------KAQERWRC--AKGTACALPALIGY 450

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
              R+  +IEGLGK  +    +S      +   AD+FTL   Q T+ +            
Sbjct: 451 AAGREMLDIEGLGKTYVAALVES----GYVTDIADLFTLSAEQLTTASGS-------AKR 499

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
              L + I   + + L R   +LG+   G  ++R +A+++    +  Q           D
Sbjct: 500 AAKLAEQIEAAKALPLSRVFCALGVLGTGRSMSRRIARHFGDMGSIRQA----------D 549

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKK 651
             +L  V  +G   A  IVE  Q       ++ L+          E +    +  +  K 
Sbjct: 550 AAALRDVEGIGPEKAPVIVE--QVASLAPVIDKLIAAGVSMAEPREASPAGDAGPLAGKV 607

Query: 652 LVFTGTLQK----IQRHKAQEYVTQLGAVVSAILSRKTDIII----VGDNPGSKLEKAQQ 703
           +V TG +        R +    + + G    + ++ KT I++     G  P +K  KA +
Sbjct: 608 VVVTGKMTGPLAAYARAEMTALIERAGGRAGSSVNAKTSILVAAPSAGGKPSTKAIKAAE 667

Query: 704 LGVKIMNEEQFLFLLQQY 721
           LGV++   E F  L+  +
Sbjct: 668 LGVEVHTPEDFAELVADF 685


>gi|254389746|ref|ZP_05004971.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
 gi|197703458|gb|EDY49270.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 719

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 187/738 (25%), Positives = 298/738 (40%), Gaps = 76/738 (10%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
            L  ++A S   +R E  +  Q +      YY      + D+ YD L+R   A     P 
Sbjct: 35  TLPAVQAQSAVSSRTEYEAALQRLRDASRAYYGDGDSPLDDATYDQLRRSVLAWEQENP- 93

Query: 65  LARSEDPNGPLNKI--GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
                 P+ P   +  G         V H+ P LSL+ + + E L  +   + R      
Sbjct: 94  --AEVSPDSPTGLVADGAAPVGD---VAHTTPLLSLDNVSDAEGLTAWGLSVQRRLGHVP 148

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
                FT+EPK+DG  +  RY  G+ V    RG G  GEDVS  I  I  +P  L+L + 
Sbjct: 149 QGG--FTVEPKLDGAAVAARYRGGRLVQVITRGVGSHGEDVSHVIGQIDGLPEQLTLPV- 205

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHG 242
             +EVRGEV  ++  F   N+   A   + +ANPRN  +G LR          + F+ +G
Sbjct: 206 -TVEVRGEVAFTQEQFETANEVRAAHNEQVFANPRNGVAGTLRA-KGRSYQLRMTFWAYG 263

Query: 243 LGK----TSEIFAKGQYEMLQKMRCLGFPVNNGV----RQANTFHGIVSYYNEMKSIRST 294
             +              E L  +  +G                        + + ++R+ 
Sbjct: 264 AVELDSVAYLPAGATHAETLAAVAAVGIQTTADSPAGLHVVADLASAQQRVDAIAAMRAG 323

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LP  IDG+V K+D+ + Q   G  +R P W I+ K    +  T L D+  ++GRTG+L P
Sbjct: 324 LPVGIDGVVVKLDDATEQAAAGVGSRFPHWAIAFKLPAVERQTVLEDVVWEVGRTGVLAP 383

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
            A L PV I G+ +T ATLHN   I+            RD+ +GD V V +AG++IP+V 
Sbjct: 384 TAILAPVEIDGSTVTRATLHNPADIRR-----------RDLHIGDAVTVFKAGDIIPRVQ 432

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
             +   R   A+    P  CP C   +         K     RC      +      + +
Sbjct: 433 GPVAQLRPEGAREVPLPEVCPNCGGEIN--------KAQERWRC--AKGTACALPALIGY 482

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
              R+  +IEGLGK  +    +S      +   AD+FTL   Q T+ +            
Sbjct: 483 AAGREMLDIEGLGKTYVAALVES----GYVTDIADLFTLSAEQLTTASGS-------AKR 531

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
              L + I   + + L R   +LG+   G  ++R +A+++    +  Q           D
Sbjct: 532 AAKLAEQIEAAKALPLSRVFCALGVLGTGRSMSRRIARHFGDMGSIRQA----------D 581

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKK 651
             +L  V  +G   A  IVE  Q       ++ L+          E +    +  +  K 
Sbjct: 582 AAALRDVEGIGPEKAPVIVE--QVASLAPVIDKLIAAGVSMAEPREASPAGDAGPLAGKV 639

Query: 652 LVFTGTLQK----IQRHKAQEYVTQLGAVVSAILSRKTDIII----VGDNPGSKLEKAQQ 703
           +V TG +        R +    + + G    + ++ KT I++     G  P +K  KA +
Sbjct: 640 VVVTGKMTGPLAAYARAEMTALIERAGGRAGSSVNAKTSILVAAPSAGGKPSTKAIKAAE 699

Query: 704 LGVKIMNEEQFLFLLQQY 721
           LGV++   E F  L+  +
Sbjct: 700 LGVEVHTPEDFAELVADF 717


>gi|149911742|ref|ZP_01900348.1| NAD-dependent DNA ligase [Moritella sp. PE36]
 gi|149805167|gb|EDM65187.1| NAD-dependent DNA ligase [Moritella sp. PE36]
          Length = 482

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 202/507 (39%), Positives = 287/507 (56%), Gaps = 33/507 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++  K++ +L  ++  ++  YY    P + D+EYD L R    +   FP+LA +     
Sbjct: 1   MKEQAKQIQTLTLQLEEYNHQYYVLDNPTVPDAEYDRLLRELKQLETEFPELALA---TS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+GGE      ++ H IP LSL+ +++ E+L  F  R+      K    I F+ EPK
Sbjct: 58  PTQKVGGEALTGFSQIQHEIPMLSLDNVFSAEELLAFEKRLQDRLLTKA--EIKFSCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192
           +DG  ++I YE G FV AA RGDG  GED+S  ++ I +IP  L  N  PE +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVFVRAATRGDGQIGEDISENVKTIKSIPLRLRGNDFPERLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250
           + K  F  LN      G K + NPRNAA+G LR+L+P         F  + LG       
Sbjct: 176 MPKAGFDLLNVNAKKKGEKTFVNPRNAAAGSLRQLDPKIAASRPLAFNAYSLGVVEGEVE 235

Query: 251 ----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
               +    E LQK++  G PV   V  A  + G + +Y ++   R +L YDIDG+VYKV
Sbjct: 236 GKGLSNSHAENLQKLKLWGIPVCADVTVAMGYQGCLDFYEQIGERRDSLSYDIDGVVYKV 295

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+ +LQK LG  AR+PRW  SHKF  ++  T LLD++ Q+GRTG +TPVARLEPV +GG 
Sbjct: 296 DDLALQKTLGFVARAPRWATSHKFPAQEEITTLLDVEFQVGRTGAITPVARLEPVFVGGV 355

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++NATLHN D I  L            I++ D+V+++RAG+VIP+V  +++  R  DAQ
Sbjct: 356 TVSNATLHNSDEIARL-----------GIKIKDQVIIRRAGDVIPQVARVMLERRPDDAQ 404

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
              FP+ CP+C S V R          A  RCT GL C AQ+ E +KHF SR A N++GL
Sbjct: 405 DIVFPATCPVCDSEVERIEGE------ATVRCTAGLYCGAQRKEAIKHFASRKALNVDGL 458

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTL 513
           G + ++        A  I+ PAD+FT+
Sbjct: 459 GDKLVEQLVD----ADLIKTPADLFTV 481


>gi|331695637|ref|YP_004331876.1| DNA ligase [Pseudonocardia dioxanivorans CB1190]
 gi|326950326|gb|AEA24023.1| DNA ligase [Pseudonocardia dioxanivorans CB1190]
          Length = 812

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 184/575 (32%), Positives = 290/575 (50%), Gaps = 32/575 (5%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    + +  R+  ++L  E++ H   YY    P++ D ++D L R   A+   +PDL  
Sbjct: 17  PAPEPAPDADRERHAALATEVADHQFRYYVLDAPVVSDGQFDELWRELVALEERYPDLV- 75

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  K+G           H    LSL+  ++ ++LR +  R+ R         + 
Sbjct: 76  --SPDSPTQKVGSRFATEFAAHDHLERMLSLDNAFSADELRTWAERVGREIG----TDVH 129

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPE 183
           +  E KIDG  + + YE GK V A  RGDG +GEDV+  +R +  +P  L+      +P 
Sbjct: 130 YLCELKIDGLAVNLLYENGKLVRALTRGDGRTGEDVTLNMRTLAEVPEQLTGTAEFPVPA 189

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
           ++EVRGEVY    DF ALN  ++  G+ P+ANPRN A+G LR+ +P    +R L    HG
Sbjct: 190 LLEVRGEVYFRLEDFQALNASLVEAGKPPFANPRNTAAGSLRQKDPRVTASRNLRLICHG 249

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           LGK      +   +    +R  G PV+   +       +V++       R  + ++IDG+
Sbjct: 250 LGKREGFNPERLSQAYDALRAWGLPVSGRTKIVQGIDQVVAHVEYWGEHRHDIEHEIDGI 309

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V KVDE +LQ++LG  +R+PRW I+ K+  ++A+TRLLDI + +GRTG +TP A +EPV 
Sbjct: 310 VVKVDEVALQRRLGATSRAPRWAIAFKYPPEEATTRLLDIRVNVGRTGRVTPFAFMEPVT 369

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G+ ++ ATLHN D ++            + + +GDRV++++AG+VIP+V+  I++ R 
Sbjct: 370 VAGSTVSLATLHNADEVRR-----------KGVLIGDRVVIRKAGDVIPEVLGPIIDVRD 418

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              + F  P+ CP C + +               RC    +C AQ  ERL H   R AF+
Sbjct: 419 GSEREFVMPTHCPECGTELAHQ-----KAGDVDIRCPNARSCPAQLRERLFHVAGRGAFD 473

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           IEGLG +           A  +    D+F L               G    +   L D++
Sbjct: 474 IEGLGYEAATALLN----AGVVADEGDVFALTEEDLLRVDLFRTKAGVLSANGRKLLDNL 529

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
            K ++  L R +  L IRHVG   A++LA+ + S 
Sbjct: 530 EKAKDRPLWRVLVGLSIRHVGPTAAQALAREFGSL 564



 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 58/120 (48%)

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           V  VG  IA A+ +++    +   V          +   + +V   +E   +V TG++  
Sbjct: 679 VEGVGPTIATAVRDWFTVDWHRDVVAKWRAAGVRMVDEVDTSVPRTLEGMSIVVTGSMAG 738

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             R +A+E +   G   +  +S+KT  ++ GD PGSK +KA +L V I++E  F  LL  
Sbjct: 739 YSRDEAKEAIAARGGRAAGSVSKKTSFVVAGDAPGSKYDKALELRVPILDEAGFGVLLAD 798


>gi|203287992|ref|YP_002223007.1| DNA ligase [Borrelia recurrentis A1]
 gi|254781265|sp|B5RPQ2|DNLJ_BORRA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|201085212|gb|ACH94786.1| DNA ligase [Borrelia recurrentis A1]
          Length = 669

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 190/702 (27%), Positives = 335/702 (47%), Gaps = 53/702 (7%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           +  + E+ SL   I   D  YY  S P + D  YD    R   + + +P+       + P
Sbjct: 3   KDIKDEILSLRDAIKKWDREYYVDSSPTVGDVTYDKALLRLQYLENRYPEYKTL---DSP 59

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
             K G ++     ++ HS P LSL+K +++++L  ++ ++           +  + EPKI
Sbjct: 60  TLKFGSDLLNDFKEIEHSYPILSLDKAYDVKELLLWVEKMS-LEGSNLGFDMGISAEPKI 118

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I + Y+ G    A  RGDG  G +V   +R I  +P  +   +   + +RGE+YI+
Sbjct: 119 DGCSIVLYYKDGILEKALTRGDGRFGNNVIENVRTIKNVPLCIGERVE--LVLRGEIYIT 176

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
           K DFL +N  +       Y N RN  SGILRR+N  ++  +           S +     
Sbjct: 177 KKDFLKINHTL----DDSYINARNLTSGILRRINSREVVNFPLDIFVYDILYSSLKLNTN 232

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
           ++   K++  GF +N   +     +    I++Y  E++  R    Y+IDG+V KV++F L
Sbjct: 233 HDAFDKLKHFGFKLNPFCKFFCGKNLGENIINYVKEIEEQRERFEYEIDGVVLKVNDFRL 292

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           +  LG  +  P+W I++KF   +A ++++DI +Q+GR+G +TPVA +E V I GA IT+A
Sbjct: 293 RDVLGYTSHHPKWSIAYKFESLRAVSKVIDIVVQVGRSGKITPVANIEKVLIAGAFITSA 352

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +LHN+DYI  +            + V D V + R G+VIP V  ++      +   F  P
Sbjct: 353 SLHNQDYIDSI-----------GLNVKDVVAISRRGDVIPAVELVVEKLSVGN---FKIP 398

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           ++CP C+  ++++          AH     + C  + +  +K+F S+   NI GL ++ +
Sbjct: 399 NYCPSCKKSLIKEG---------AHLFCVNIHCPLKIMGHIKYFCSKKCMNIVGLSEKTI 449

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
           +F F        I    D++T    +         + GF    V  L  SI + +N   +
Sbjct: 450 EFLFNMN----FISSEIDLYTFDFDRLIG------LKGFNFKRVNKLKRSIEESKNRPFK 499

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           + + ++GI+ +G            +  N    I+ +   N +  + L+ +  +G+ IA  
Sbjct: 500 KLLLAMGIKDLGINTILL---LINNNLNSFDAISLLCQDNKNALVKLLDIKGIGERIAFN 556

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQE 668
           I+  + +   +       K++   +     N    SS +  KK   TG+  +  RH   +
Sbjct: 557 IIRAFNDKIILDKF-NFFKKLGFKMQEDSMNCVIDSSFLFGKKFCITGSFDEYSRHVLID 615

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +T+ GA+  + +SR  D ++VG +PG KL+KA  LG+KI++
Sbjct: 616 KITKKGAIFHSAVSRYLDFLLVGKSPGLKLKKANNLGIKILS 657


>gi|291529755|emb|CBK95341.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Eubacterium rectale M104/1]
          Length = 709

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 166/749 (22%), Positives = 298/749 (39%), Gaps = 93/749 (12%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            +  L  +++   + YY     I+ + E+D +  +   +            P+ P +K+G
Sbjct: 6   RMKELVNKLNEASNAYYNGKDEIMSNHEWDTMFDQLAQLEEE----TGIILPDSPTSKVG 61

Query: 80  GEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
            +      L KV H  P LSL+K  +I +  K  ++           S    +  K+DG 
Sbjct: 62  ADEIGGNGLKKVRHEFPALSLDKTKDIYEFPKVFSK---------AASGDCVVMHKLDGC 112

Query: 138 MITIRYEK------GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            + + Y+       G+ V A  RG+G  G D++     I  IP    +     + VRGE 
Sbjct: 113 TLCLTYDGSRNGGCGRLVQAVTRGNGEIGSDMTYQASYIEGIPMT--IGFKGKLIVRGEA 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
            ++ ++F  +N  +   G + Y+NPRN A+  +    P    R + F    L        
Sbjct: 171 LMTYSEFERINSNL-EEGEEEYSNPRNLANSTITMKEPGLKGRKVIFKAFKLVYMEPAAD 229

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANT----------------FHGIVSYYNEMKSIRSTL 295
                       L      G                         I++  N       TL
Sbjct: 230 DKIEVPATFFGALTLLERLGFGVVEHELARAYSSNPDVDSDLPDQIINVMNSFSDRVETL 289

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRW--MISHKFAEKQASTRLLDIDIQIGRTGILT 353
            Y +DGLV   D++     L      P      + K+A++   T L +I+    RTG + 
Sbjct: 290 DYPVDGLVVASDDYKTADALPVTGHHPNRLTGFAFKWADECVETTLREIEWSPSRTGRIN 349

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA  +PV + G  +T A++HN   +K L            +RVGD++ V +A ++IP +
Sbjct: 350 PVAVFDPVQLEGTTVTRASVHNVSIVKKLR-----------LRVGDKISVFKANKIIPCI 398

Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
              +           S    CP+C       +     + V    CT    C+ +Q+++  
Sbjct: 399 DKNLTPG-DELTYAESHACTCPVCGMETSPMITHSGDRDVEVEMCTNP-NCAVKQVKKFV 456

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533
           HF  RD  +I GL ++ L+ F +       I+  AD++ L   ++     I  + GFG  
Sbjct: 457 HFCERDCMDIVGLSEKTLEKFIEK----GFIKQLADLYRLDTFERN----IAAMDGFGQK 508

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNN 592
           S  N++ SI   R  +   FI +LGI  VG   A+   K Y  + + F  ++ N      
Sbjct: 509 SYDNIWKSIQISRKTTFVPFIHALGIPMVGKGQAKLFDKAYKGNVKKFFNDVYNRK---- 564

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQ-----NPRNICAVEA------------LLKEVSPS 635
               +   +  +G+ I  ++ ++        P     ++             LL+ +   
Sbjct: 565 ----TFTDIDGIGEKIELSLWDWGSRYLGWIPFEKDLLDEMRRTSCNTEVYDLLRWIDVE 620

Query: 636 I-GRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVG-- 691
           I           +  K  V TG++   + R + Q  + +LG   +  +++KT  +I    
Sbjct: 621 IPAEANVAGKDILSGKTFVITGSVNHFKNRAELQAKIEELGGKATGSVTKKTSYLINNDV 680

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++   K +KA++LGV I++E++FL ++ +
Sbjct: 681 ESTSGKNKKAKELGVPIISEDEFLEMIGE 709


>gi|302345294|ref|YP_003813647.1| DNA ligase (NAD+) [Prevotella melaninogenica ATCC 25845]
 gi|302149440|gb|ADK95702.1| DNA ligase (NAD+) [Prevotella melaninogenica ATCC 25845]
          Length = 673

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 169/708 (23%), Positives = 290/708 (40%), Gaps = 67/708 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KE+ SL  +++   D YY     ++ D E+DA   +   +            P+ P   +
Sbjct: 3   KEIQSLVNQLNAASDAYYNGRDELMTDYEWDAAFDKLKKLEEE----TGIILPDSPTQNV 58

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
             +      K  H  P LSL K   +EDL K+              +    L  K+DG  
Sbjct: 59  SADNVAG-KKEEHEFPALSLAKTKKVEDLAKWAE------------NKPIWLSWKLDGLT 105

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + Y+ GK      RG+GH G +++    AI  I +   +     + +RGE  IS  DF
Sbjct: 106 LVVTYDNGKLTKVVTRGNGHIGTNITHLSTAIDGILQT--IPYKGHLVIRGEAVISYPDF 163

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEM 257
              N E      + YANPRN ASG L   +  +   R+L +    L  T E        M
Sbjct: 164 EQFNMEA----EEEYANPRNLASGSLTLKDINEVKARHLRWIPFTLVYTEEEINSWGGRM 219

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI-----RSTLPYDIDGLVYKVDEFSLQ 312
                     V+  + +  T + I +  +           S  PY +DGLV   ++    
Sbjct: 220 EWLEHQGFRVVDRELIEQPTVNNIEAVIHHWTERVTGVSSSPFPYPVDGLVISYEDTVYA 279

Query: 313 KQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
                      R   + K+ ++ A T L  I+     +  ++PVA   P+ + G  +  A
Sbjct: 280 ATGSVTGHHATRAGYAFKWQDESAETELDYIEWSCAAST-ISPVAVFRPIELEGTTVKRA 338

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +L N    + L    K          G ++ V +A ++IPKV+++I          F  P
Sbjct: 339 SLCNISECERLGIGDK----------GTKIAVIKANKIIPKVINVI-----ESVGTFHIP 383

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S      +  +G             C A+QL++   FVS++  NI+GL +Q +
Sbjct: 384 ETCPVCHSATEVSESEVSGTRTLH---CTNTHCPAKQLKKFGRFVSKEGVNIDGLSEQTV 440

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             F         +R  AD+F L        T++  + GFG+ SVT L  +I K RN+   
Sbjct: 441 QKFIN----LGWVREYADLFHLTEH----ATELRTMEGFGNKSVTKLLAAIEKARNVEAR 492

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +F+L I  VG ++   L   Y   +     I       +        +  +G   + +
Sbjct: 493 RLLFALNIPLVGQDVCNRLLSAYPLEELIKTAIE------SAAEDVFSTIAGIGPEKSAS 546

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670
            V + ++  N   ++ LL E++ S         S  +    V TG +   + R++ + Y+
Sbjct: 547 FVRWMKDTDNQSMLQHLLAELNVSQPSSAPTGDS-CQGLTFVVTGDVHHYKNRNELKAYI 605

Query: 671 TQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLF 716
              G  V+  +S+ T+ +I    ++   K +KA++L + I++E++F+ 
Sbjct: 606 ESQGGKVTGSVSKSTNYLINNDVESTSGKNQKAKELSIPIISEDEFIA 653


>gi|71892277|ref|YP_278011.1| DNA ligase [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|123747814|sp|Q492G5|DNLJ_BLOPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71796383|gb|AAZ41134.1| DNA ligase [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 595

 Score =  356 bits (913), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 210/622 (33%), Positives = 339/622 (54%), Gaps = 51/622 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            ++++  L +++ + +  YY  ++  + D +YDA+  + + +   +P L      + P  
Sbjct: 4   VKQKIQKLRKKLRHWEYLYYTKNESAVSDEKYDAMLEKLNQLEQIYPHLIA---ESSPTQ 60

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +IGG    +  K+ H +P LSL  I     L  F  RI    +   ++ + +  E KIDG
Sbjct: 61  RIGGVSQYNFKKIHHKVPMLSLNSIVASFQLLSFDKRIK--IKLHANHVMSYCCELKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV------LSLNIPEIIEVRGE 190
             +++ Y++GK +YAA RGDG  GEDV+  I  I  +P            +P ++E+RGE
Sbjct: 119 VAVSLLYKEGKLIYAATRGDGKIGEDVTENISTIRAVPMCLKIDSNKYGKLPYLLEIRGE 178

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL--GKTS 247
           V+ISK  FL LN   I  G KP++N RNAASG LR+L+P+   TR L+F+ +G+      
Sbjct: 179 VFISKLCFLELNKITIQQGNKPFSNARNAASGSLRQLDPSVTATRPLSFYCYGISNYCGE 238

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      +E LQ     G P+NN +R  +  + ++ YY+ +K+IRS L ++IDG+V KV+
Sbjct: 239 KELPDSHWERLQLCENWGLPINNYIRLISGVNKVLEYYSYIKTIRSNLEFNIDGIVIKVN 298

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             + Q +LG  +R+P W +++KF  + +S ++ ++  Q+GRTGI+TP+A LEP+ I    
Sbjct: 299 SCAYQSKLGCGSRAPHWALAYKFPSEVSSAKVDNVIFQVGRTGIITPIAYLEPIVISDVT 358

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           I    +HN + +K L            + +GD V ++R+G+VIPK+V++I++ER    + 
Sbjct: 359 IRKVNMHNINEVKRL-----------GLMIGDTVRIQRSGDVIPKIVEVILSERTDHVKT 407

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P FCP+C SR+      KT +  +  RCT GL+C AQ+   L+HFVS+ A NI G+G
Sbjct: 408 IELPRFCPVCGSRI------KTWRNQSILRCTAGLSCLAQRKATLEHFVSKKAMNIYGMG 461

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +D           I   +D+F L +       K+  + GFG  ++  L  SI   + 
Sbjct: 462 NKIIDQLVNQ----GLIFTSSDVFRLNK------NKLLCLEGFGLENIERLLRSIEDSKK 511

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           I+L RFI++LGI  VG  +A +LA  Y + +N A            D  SL  +  VG I
Sbjct: 512 ITLARFIYALGIYGVGETVASNLAIVYKTIENLAAA----------DLQSLSNLKYVGPI 561

Query: 608 IAQAIVEFYQNPRNICAVEALL 629
           IA  I  F++NP N+  V+ L+
Sbjct: 562 IANNIYHFFRNPDNLKNVQDLI 583


>gi|117926963|ref|YP_867580.1| Fis family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|166215818|sp|A0LDY1|DNLJ_MAGSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|117610719|gb|ABK46174.1| transcriptional regulator, Fis family [Magnetococcus sp. MC-1]
          Length = 768

 Score =  356 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 220/617 (35%), Positives = 318/617 (51%), Gaps = 47/617 (7%)

Query: 113 RIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT 172
           R  R W  +    + +  EPK+DG   ++ Y +G  V AA RGDG  GEDV+A  R I  
Sbjct: 172 RRLRLWAAEQPQRVEYVAEPKLDGLAFSLTYAEGVLVRAATRGDGQEGEDVTAHARTIQD 231

Query: 173 IPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT- 230
           +P  L     P ++EVRGEVY+    F  LN E    G K +ANPRNAA+G LR+L+P  
Sbjct: 232 VPLRLQGAGYPALLEVRGEVYMPLATFEKLNAEARERGEKTFANPRNAAAGSLRQLDPKI 291

Query: 231 DITRYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289
             +R L  F +G G       A    E+L  ++  G  V+    +     G ++Y   + 
Sbjct: 292 TASRGLRMFCYGTGYVEGGTLADRYAEILAALKGWGLRVSPEAERVEGAQGCLAYTERLG 351

Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349
             R TLPY+IDG V KVD   L+++LG  AR+PRW ++ KF   + ST +  ID+Q+GRT
Sbjct: 352 EKRETLPYEIDGAVLKVDSQRLRERLGFVARAPRWAMAFKFPATEESTTVQAIDLQVGRT 411

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
           G++TPVARLEPV +GG  +TNATLHN   +             +D+RVGDRV+V+RAG+V
Sbjct: 412 GVITPVARLEPVAVGGVTVTNATLHNFLELAR-----------KDVRVGDRVIVRRAGDV 460

Query: 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
           IP+VV +I  E H     +  P  CP+C +   R+          A RC+GGL C AQ  
Sbjct: 461 IPEVVRVIPRESHGALAVYKEPVACPVCGAPTEREGGET------ALRCSGGLTCRAQVK 514

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
           E +KHF SR A NIEGLG + +    +    A  +   +D++ L  ++Q     +  +  
Sbjct: 515 EGVKHFASRKAMNIEGLGDKLVALLMQ----AGLVERISDLYRLHEQRQ----VLVGLER 566

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
            G  SV NL ++I + +  S  RF+F LGIR VG  +A SLA ++ S             
Sbjct: 567 LGGKSVANLLEAIEQSKAQSAARFLFGLGIRDVGVTLAGSLAAHFTSLDALMAAT----- 621

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--------- 640
                   L+ +  VG+++A+ +V F+    +   + AL      + G            
Sbjct: 622 -----VEDLVGIEDVGEVVARRVVHFFAQAHHGAELAALRALGVAAAGEPWRVEPDGHGV 676

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
                 +    +V TGTL  + R  A   +  LGA V A +S KT  ++ G++ GSKL K
Sbjct: 677 AAAEQPLSGLSVVLTGTLAGLTREAAAVRLEGLGAKVVASVSGKTGCLVCGESAGSKLAK 736

Query: 701 AQQLGVKIMNEEQFLFL 717
           AQ+ GV +++E     L
Sbjct: 737 AQKAGVPVLDEAALEGL 753



 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
             + L + ++++   Y+     ++ D+EYD L R   ++  A P L      + P +++G
Sbjct: 5   RAAELRKRLNHYAHSYHTLDTSLVSDAEYDRLFRELQSLEAADPTLI---SADSPTHRVG 61

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           G +     KV H +  LSL+  ++ +DL +F  R+     + 
Sbjct: 62  GAILEGFEKVRHRVAMLSLDNAFSAQDLVEFHRRVQEGLAES 103


>gi|225572684|ref|ZP_03781439.1| hypothetical protein RUMHYD_00873 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039920|gb|EEG50166.1| hypothetical protein RUMHYD_00873 [Blautia hydrogenotrophica DSM
           10507]
          Length = 622

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 167/691 (24%), Positives = 294/691 (42%), Gaps = 84/691 (12%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + + EYD L      +        +    N P  ++G +    L K TH  P LSL+K  
Sbjct: 1   MSNLEYDRLYDELVKLEQE----TKVILANSPTVQVGYQALDELPKETHETPMLSLDKTK 56

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           ++E+LR+FI                     K+DG  I + YE+GK   A  RG+G  GE 
Sbjct: 57  DMEELREFIGDHRSLL------------SWKLDGLTIVLTYEEGKLSKAVTRGNGIVGEV 104

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
           ++   R    IP  L++     + +RGE  I+ +DF  +N  +  +    Y NPRN  SG
Sbjct: 105 ITNNARVFQNIP--LTIPYKGKLVLRGEAVITYSDFERINASIAQI-EARYKNPRNLCSG 161

Query: 223 ILRR-LNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM-RCLGFPVNNGVRQANTFHG 280
            +R+  N     R + F    L    ++  +   +   +  +  GF V       +    
Sbjct: 162 SVRQLSNEITAKRNVQFLAFALVSAQDVDFRNSRDFQMRWLKSQGFDVVEYRIVTSENLE 221

Query: 281 IVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340
                           +  DGLV   D+ +    LG  ++ PR   + K+A++   T L 
Sbjct: 222 --ESVQYFSEAVERNDFPSDGLVAIYDDIAYGDSLGSTSKFPRNSYAFKWADETKETVLK 279

Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
           +++    RTG++ PVA  EPV + G  ++ A++HN   +K L            + +GD 
Sbjct: 280 EMEWSPSRTGLINPVAIFEPVELEGTTVSRASVHNISILKELQ-----------LGIGDH 328

Query: 401 VLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG 460
           + V +A  +IP++ + +       +   + P  CP+C             +         
Sbjct: 329 IQVYKANMIIPQIAENLTR-----SGNLTIPDACPVCGQEARVI-----KENEVESLYCM 378

Query: 461 GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS 520
              C A++++    FVSRDA N+EGL +  L+           I    DIF L+R ++  
Sbjct: 379 NPQCQAKRIKAFTLFVSRDAMNVEGLSEATLEKLIAR----GFIHDFGDIFELERYRE-- 432

Query: 521 TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580
             +I  + G G+ S  NL  SI K R+ +L + I+SLGI ++G   A+ + +++      
Sbjct: 433 --QITEMEGLGEKSFDNLVSSIEKARDTTLPKMIYSLGIPNIGLANAKVICRHFD----- 485

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
                ++    N     +  +  +G +IA+ +V F +N  N   +E L+  +   + +  
Sbjct: 486 ----YDLERLKNASEDEVSGIDGIGPVIAKNLVRFLENEENQKKLEHLVSHLR--LEKPA 539

Query: 641 KNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD------- 692
           + +   +E    V TG+++    R+  +E + + G  V+  ++ KT  +I  D       
Sbjct: 540 ETLKKSLEGLNFVITGSVEHFPNRNAVKEAIEEQGGKVTGTVTSKTSYLINNDTASSSSK 599

Query: 693 ----NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
                        + LGV I++EE+FL +L 
Sbjct: 600 NKKA---------KALGVPIISEEEFLEMLN 621


>gi|317502616|ref|ZP_07960737.1| NAD-dependent DNA ligase LigA [Prevotella salivae DSM 15606]
 gi|315666297|gb|EFV05843.1| NAD-dependent DNA ligase LigA [Prevotella salivae DSM 15606]
          Length = 665

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 156/717 (21%), Positives = 281/717 (39%), Gaps = 59/717 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ ++ R  +  L  +++   + YY      + D E+DAL      +          + P
Sbjct: 1   MAEDKLRT-MRELVDKLNSAANAYYNGQGEQMSDYEWDALFDEVKHLEKE----TGQQFP 55

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P N++  +  +   K  H  P LSL K     +L K+                   L 
Sbjct: 56  DSPTNRVSEDNIIG-KKEEHEFPALSLAKTKQPVELAKWAE------------EHPIWLS 102

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  + + +  GK      RG+GH G +++    AI  IP+   +     + VRGE 
Sbjct: 103 WKLDGLTLVVTFNNGKLTKVVTRGNGHIGTNITHLATAIQGIPQE--IKNKGHVVVRGEC 160

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
            IS  DF   N        + YANPRN ASG L   +  ++ +    ++      ++   
Sbjct: 161 VISYADFEQFN----IESEEEYANPRNLASGSLTLKDINEVKQRHLVWIPFTLVYTDEVI 216

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANT---FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
               + +  +   G          +        V      K      PY +DGLV   D+
Sbjct: 217 TSWGKRMDWLEKNGMKAVEREEIEHPTLQNIEQVIAKWTEKVTGKENPYPVDGLVITYDD 276

Query: 309 FSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            +  +          R  ++ K+ ++ A T L  ++        ++PVA   PV++ G  
Sbjct: 277 TAFAQTGSVTGHHATRAGLAFKWQDESADTVLDHVEWSCAA-NTISPVAVFSPVDLEGTS 335

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+L N    + L   G+          G ++ V +A ++IPKV+ +I      D   
Sbjct: 336 VKRASLCNISECERLGIGGQ----------GTKLSVIKANKIIPKVIRVIEKVGDLDIP- 384

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                 C          +   +        CT     + Q   +   FVS++  NI+G+ 
Sbjct: 385 ------CSCPVCNAPTRITISSASETKTLHCTNPKCPAKQL-RKFARFVSKEGVNIDGMS 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +Q +  F         ++  AD++ L+        ++ +  GFG+ SV NL  SI K R+
Sbjct: 438 EQTVAKFIN----FGWVKTYADLYKLKDH----AIQLSSTDGFGEKSVRNLLRSIEKARD 489

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           +    F+++L I   G ++ + L   Y                          +  +G  
Sbjct: 490 VEAHHFLYALSIPLCGQDVCKRLLSAYSLQDIITIASGKSENIVPASDSPFSLIAGIGPE 549

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKA 666
            +  +V ++ +  N+  VE LL++V  S         S  +    V TG +   + R++ 
Sbjct: 550 KSNQVVTWFHDEENLAMVEELLQQVRVSQENTAAEGDS-CKGLTFVVTGDVTHYKNRNEL 608

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           + Y+   G  V+  +S+ TD +I  D     SK +KAQQLG+ I++EE+F+    + 
Sbjct: 609 KAYIESQGGKVTGSVSKSTDYLINNDVASQSSKNQKAQQLGIPIISEEEFIEKFGKE 665


>gi|261880335|ref|ZP_06006762.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333026|gb|EFA43812.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 665

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 165/707 (23%), Positives = 292/707 (41%), Gaps = 61/707 (8%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L ++++   D YY     ++ D E+DAL  +   I            P+ P N++
Sbjct: 5   QRMQELVEQLNRASDAYYNGRDELMSDYEWDALFDKLKLIEQE----TGKTLPDSPTNRV 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
             +      K  H   TLSL K   ++DL K+ T                 L  K+DG  
Sbjct: 61  SEDNITG-QKEEHEFATLSLAKTKLVDDLVKWAT------------GRPIWLSWKLDGLT 107

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + Y+ GK      RG+GH G +++   +AI  IP    +     + +RGE  IS  DF
Sbjct: 108 LVVTYDNGKLTKVVTRGNGHIGTNITHLAKAIAGIP--QKIKNKGHVVIRGEAIISYEDF 165

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
              N          YANPRN ASG L   +P ++++    ++      S+         +
Sbjct: 166 EQFN----MENDAEYANPRNLASGSLTLKDPNEVSQRNIRWIPFTLVHSDEDISSWGSRM 221

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVS---YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
             +R  G    +           +        ++      PY +DGLV   D+ +     
Sbjct: 222 DFLRENGMQCVDHECIEQPTLENIQKAIDQWTLRVTNRENPYPVDGLVIVYDDTAYASTG 281

Query: 316 GERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
                   R   + K+ ++ A T L +I+     +  ++PVA   PV + G  +  A+L 
Sbjct: 282 SVTGHHATRAGYAFKWQDESADTELEEIEWSCAAST-ISPVAVFRPVELEGTTVKRASLC 340

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N    + L   GK          G ++ V +A ++IPKV+ +              P  C
Sbjct: 341 NISECERLGIGGK----------GTKLAVIKANKIIPKVIKVY-----EKVGELETPHEC 385

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P+C+S     ++P +G             C A++L++ + F+S+D  +++G+ +Q +  F
Sbjct: 386 PVCKSPTEIIVSPSSGTRTLH---CTNETCPAKELKKFRRFLSKDGMDVDGISEQTISKF 442

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                    +   ADI+ L         +I  + GFG+ S  N+  SI K R +   RF+
Sbjct: 443 IN----LGWVAEYADIYHLPAH----AGQIARLEGFGEKSAANMVSSIEKSRKVEARRFL 494

Query: 555 FSLGIRHVGAEIARSLAKYY--LSYQNFAQEINNIIAHNNDDWLSLIR-VPLVGDIIAQA 611
           ++L I  VG +    L   Y      N                  L+  +P +G   + +
Sbjct: 495 YALSIPLVGKDACNRLLSTYALTDLINMVTGRGKSTDLFTPAPGDLLAMIPGIGPETSAS 554

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670
           +V ++ + RN   V+ LL+EV        +    + E+   V TG +   + R++ + Y+
Sbjct: 555 LVNWFSDVRNQTIVDRLLQEVVIE-QVSIEPTGKKCESLTFVVTGDVHHYKNRNELKAYI 613

Query: 671 TQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715
              G  V+  +S+ T  +I  D  +   K +KAQQL + I++E++F+
Sbjct: 614 ESQGGKVTGSVSKSTSFLINNDVTSTSGKNQKAQQLHIPIISEDEFI 660


>gi|260202156|ref|ZP_05769647.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T46]
 gi|289444580|ref|ZP_06434324.1| DNA ligase, NAD-dependent [Mycobacterium tuberculosis T46]
 gi|289417499|gb|EFD14739.1| DNA ligase, NAD-dependent [Mycobacterium tuberculosis T46]
          Length = 517

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 169/545 (31%), Positives = 271/545 (49%), Gaps = 31/545 (5%)

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +PE++EVRGEV+   +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L   
Sbjct: 1   MPEVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMI 60

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            HGLG          ++    +R  G PV+     A    G+    +     R  + ++I
Sbjct: 61  CHGLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEI 120

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V KVDE +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + 
Sbjct: 121 DGVVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMT 180

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G+ +  ATLHN   IK            + + +GD V++++AG+VIP+V+  +V 
Sbjct: 181 PVKVAGSTVGQATLHNASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVE 229

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R    + F  P+ CP C S +  +      +  A  RC     C  Q  ER+ H  SR+
Sbjct: 230 LRDGSEREFIMPTTCPECGSPLAPE-----KEGDADIRCPNARGCPGQLRERVFHVASRN 284

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
             +IE LG +      +++     I    ++F L  R    T       G    +   L 
Sbjct: 285 GLDIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLL 340

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            +++K +   L R + +L IRHVG   AR+LA  + S    A                L 
Sbjct: 341 VNLDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAA----------STDQLA 390

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
            V  VG  IA A+ E++    +   V+         +   +++V   +    +V TG+L 
Sbjct: 391 AVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLT 450

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              R  A+E +   G   +  +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL 
Sbjct: 451 GFSRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLA 510

Query: 720 QYNTT 724
               +
Sbjct: 511 DGPAS 515


>gi|288802753|ref|ZP_06408191.1| DNA ligase [Prevotella melaninogenica D18]
 gi|288334903|gb|EFC73340.1| DNA ligase [Prevotella melaninogenica D18]
          Length = 673

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 169/708 (23%), Positives = 290/708 (40%), Gaps = 67/708 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           KE+ SL  +++   D YY     ++ D E+DA   +   +            P+ P   +
Sbjct: 3   KEIQSLVNQLNAASDAYYNGRDELMTDYEWDAAFDKLKKLEEE----TGIILPDSPTQNV 58

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
             +      +V H  P LSL K   +EDL K+              +    L  K+DG  
Sbjct: 59  SADNVAGKKEV-HEFPALSLAKTKKVEDLAKWAE------------NRPIWLSWKLDGLT 105

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + Y+ GK      RG+GH G +++    AI  I +   +     + +RGE  IS  DF
Sbjct: 106 LVVTYDNGKLTKVVTRGNGHIGTNITHLSTAIDGILQT--IPYKGHLVIRGEAVISYPDF 163

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEM 257
              N E      + YANPRN ASG L   +  +   R+L +    L    E        M
Sbjct: 164 EQFNMEA----EEEYANPRNLASGSLTLKDINEVKARHLRWIPFTLVYAEEEINSWGGRM 219

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI-----RSTLPYDIDGLVYKVDEFSLQ 312
                     V+  + +  T   I +  +           S  PY +DGLV   D+    
Sbjct: 220 EWLEHQGFRVVDRELIEQPTIANIKAVIHHWTERVTGASTSPFPYPVDGLVITYDDTVYA 279

Query: 313 KQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
                      R   + K+ ++ A T L  I+     +  ++PVA   PV++ G  +  A
Sbjct: 280 ATGSVTGHHATRAGYAFKWQDESAETELNYIEWSCAAST-ISPVAVFRPVDLEGTTVKRA 338

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +L N    + L    K          G ++ V +A ++IPKV+++I          F  P
Sbjct: 339 SLCNISECERLGIGDK----------GTKIAVIKANKIIPKVINVI-----ESVGTFHIP 383

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+C S      +  +G             C A+QL++   FVS++  NI+GL +Q +
Sbjct: 384 ETCPVCHSATEVSESEVSGTRTLH---CTNTHCPAKQLKKFGRFVSKEGVNIDGLSEQTV 440

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             F         +R  AD+F L        T++  + GFG+ SVT L  +I K RN+   
Sbjct: 441 QKFIN----LGWVREYADLFHLTEH----ATELRTMEGFGNKSVTKLLAAIEKARNVEAR 492

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +F+L I  VG ++   L   Y   +             +        +  +G   + +
Sbjct: 493 RLLFALNIPLVGQDVCNRLLSAYPLEELIKTAT------GSAAEDVFSTIAGIGPEKSAS 546

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670
            V + ++  N   ++ LL E++ S        +S  +    V TG +   + R++ + Y+
Sbjct: 547 FVRWIKDTDNQSMLQHLLVELNVSQLSSAPTGNS-CQGLTFVVTGDVHHYKNRNELKAYI 605

Query: 671 TQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLF 716
              G  V+  +S+ T+ +I    ++   K +KA++L + I++E++F+ 
Sbjct: 606 ESQGGKVTGSVSKSTNYLINNDVESSSGKNQKAKELSIPIISEDEFIA 653


>gi|281420079|ref|ZP_06251078.1| putative DNA ligase [Prevotella copri DSM 18205]
 gi|281405879|gb|EFB36559.1| putative DNA ligase [Prevotella copri DSM 18205]
          Length = 656

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 167/714 (23%), Positives = 292/714 (40%), Gaps = 65/714 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E+   ++ SL + ++   D YY     ++ D E+DAL  +   +     ++     PN 
Sbjct: 1   MEEKLLQMKSLVERLNQASDSYYNGKGELMTDYEWDALFDQLKRLEEETGEIL----PNS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P N++  +  +   K  H    LSL K   + DL K+                   +  K
Sbjct: 57  PTNRVSEDSIVG-KKEEHEFAALSLAKTKQVSDLVKWAE------------DRPIWISWK 103

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  + + Y+ GK      RG+GH G +++    AI  IP  +S      + VRGE  I
Sbjct: 104 LDGLTLVVTYDGGKLTKIVTRGNGHIGTNITHLAPAISGIPATISE--KGHLVVRGEAVI 161

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAK 252
           S  DF       I      YANPRN ASG L   +  +   R++ +    L  T    + 
Sbjct: 162 SYADFEQF----IIESEGDYANPRNLASGSLTLKDIEEVKQRHIQWIPFTLVYTERELSS 217

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM--KSIRSTLPYDIDGLVYKVDEFS 310
               M         PV        T   I    ++   K      P+ +DGLV   D+ +
Sbjct: 218 WGERMQMLKDLGMNPVERERIDHPTTENIQLEIDKFTEKVTSKKNPFPVDGLVICYDDTA 277

Query: 311 LQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
                        R   + K+ ++ A T L  I+     +  +TPVA  +PV + G  + 
Sbjct: 278 YAATGSVTGHHATRAGFAFKWQDEHADTVLDHIEWSCAAST-ITPVAVFKPVELEGTTVQ 336

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+L N    + L    K          G R+ V +A ++IPKV++I           F 
Sbjct: 337 RASLCNVSECERLGIGDK----------GTRLQVIKANKIIPKVINITEVV-----GSFV 381

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P+ CP+C +  V   +    K +         AC A+QL++   FVS++  NI+G+ +Q
Sbjct: 382 IPAECPVCHAPAVVRESESGTKTLH----CTNAACPAKQLKKFARFVSKEGINIDGISEQ 437

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +  F         I   AD + L+        +I    GFG  SV+NL +S+ K R+  
Sbjct: 438 TVWKFINH----GFISEYADFYKLKNY----AFEISCFEGFGKKSVSNLLESVEKSRHTD 489

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
               +++L I   G ++A+ L   Y   +       ++             +  +G   +
Sbjct: 490 GRHLLYALNIPLCGGDVAKKLLSRYKVKELIETARLSMFD------DEFASIDGIGPEKS 543

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQE 668
              + ++++  +   V+ LL E+     +      ++ +    V TG +   + R++ + 
Sbjct: 544 AKFIAWFKDDVHFLHVQHLLSELIIE-EQEPVETGNKCQGLTFVVTGDVHHYKNRNELKA 602

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           Y+   G  V+  +S+ T+ +I  D     SK +KA +L + I+ E++F+   Q+
Sbjct: 603 YIESQGGKVTGSVSKSTNFLINNDAASQSSKNKKAHELNIPIITEDEFIEKFQE 656


>gi|315608256|ref|ZP_07883246.1| NAD-dependent DNA ligase LigA [Prevotella buccae ATCC 33574]
 gi|315250037|gb|EFU30036.1| NAD-dependent DNA ligase LigA [Prevotella buccae ATCC 33574]
          Length = 662

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 160/712 (22%), Positives = 287/712 (40%), Gaps = 65/712 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ ++ R+++    + ++   D YY     ++ D E+DAL  R   +     +      P
Sbjct: 1   MTEDK-RQQMRQFVERLNAASDAYYNGQPELMTDYEWDALFDRLRQLEEETGE----TLP 55

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+  +      K  H  P LSL K    E+L K+                   L 
Sbjct: 56  DSPTAKVSADDVKG-QKEEHEFPALSLAKTKRPEELVKWAE------------GRPIWLS 102

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  +   Y+ G+      RG+GH G +++   +AI  +P    +       +RGE 
Sbjct: 103 WKLDGLTLVATYDGGRLTKVVTRGNGHIGTNITHLAQAINGLP--ARIKSAGHTVIRGEA 160

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
            IS  DF   N        + YANPRN ASG L   +  +   R++ +    L  T E  
Sbjct: 161 VISYEDFERFN----MESDEEYANPRNLASGSLTLKDVNEIKQRHIRWIPFTLVYTDEEI 216

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM--KSIRSTLPYDIDGLVYKVDE 308
                 M         PV   +    T   + +       K      PY +DGLV   D+
Sbjct: 217 DAWGKRMDWLEANGFKPVERELIANPTLEEVETVIARWTEKVTHRINPYPVDGLVISYDD 276

Query: 309 FSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
            +             R  ++ K+ ++ A T L  ++     T  ++PVA   PV + G  
Sbjct: 277 TAYAATGAVTGHHATRAGLAFKWQDEAAETELDHVEWS-CATNTISPVAVFRPVELEGTT 335

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+L N    + L   G           G R+ V +A ++IPKV+ +I          
Sbjct: 336 VKRASLCNISECRRLGIGGS----------GTRLSVIKANKIIPKVIKVI-----ETVGE 380

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP+C +    +++           CT     + Q  +  +   S++A NI+G+ 
Sbjct: 381 FDIPGKCPVCCAPT--EISISGMSDTETLHCTNDACPAKQLKKFTRFV-SKEAMNIDGIS 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +Q L  F         +   AD++ L+  Q+    ++  + GFG+ S  N+  S+ K R+
Sbjct: 438 EQTLAKFIN----LGWVGEYADLYHLREHQR----ELAGLEGFGERSAANIMASVEKSRD 489

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R +F+L I   GA++ + L   Y      +           ++      +P +G  
Sbjct: 490 AEAHRLLFALSIPLCGADVCKRLLSAYPLADLLSTA------RTVENLDHFAHIPGIGPE 543

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKA 666
            + + + + ++  N   V+ LL E+  S    E    ++      V TG +   + R++ 
Sbjct: 544 KSASFINWNRSQANQQLVDHLLCEIRVS-QVSEVPQGNKCAGLTFVITGDVYHFKNRNEL 602

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLF 716
           + Y+   G  V+  +S  T  +I    ++   K +KA+ LG++I++E+ F+ 
Sbjct: 603 KSYIESEGGKVAGSVSGATSFLINNDVESTSGKNKKAKLLGIEIISEDDFIS 654


>gi|300785073|ref|YP_003765364.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32]
 gi|299794587|gb|ADJ44962.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32]
          Length = 663

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 199/719 (27%), Positives = 324/719 (45%), Gaps = 80/719 (11%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-GPL 75
           A++ +  L   I+   D YY+   P++ D+EYDA++    ++  A P+      P+  PL
Sbjct: 3   AQERIPELADRITVLRDAYYR-GSPLVADAEYDAVEDELRSLIEAHPEF----TPDPNPL 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +++G    L    + HS P LSLEK    E +  F  R                + PK+D
Sbjct: 58  DQVGAPAVLH-APIRHSRPMLSLEKATKPEQVEAFFDR---------FPGQPVVVMPKLD 107

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + YE G+   A  RGDG +G+DV+  +RA+           P  +EVRGE  + +
Sbjct: 108 GLSLAVVYENGRLARAVTRGDGTTGDDVTKLVRALTDGIPEQVEA-PGRVEVRGEAVMLR 166

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQ 254
           + F A N    A   KP  NPRNAA+G LR  +P     R L FF   L    +      
Sbjct: 167 STFAAYN---TAHPDKPLINPRNAAAGTLRAKDPATVAERRLRFFAFDLYTEPDSAETDL 223

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
              L  +          +R+        S   E++  R+ L YD+DG V ++        
Sbjct: 224 GSALHTLGF----TAADMRRCADAAEAQSVIGEIEQQRNELDYDLDGAVLRLASRDAYAA 279

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
            G R+ SPR  ++ KFA ++ +T L D+   +G+TG + PVA LEPV +GG  +T ATL 
Sbjct: 280 AGTRSSSPRGALAFKFAAEEKTTVLSDVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATLA 339

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI-IVNERHPDAQPFSFPSF 433
           N++ I+            R I++GD VLV+RAG+VIP V  +   ++R    +    P  
Sbjct: 340 NQEVIR-----------ARGIKIGDTVLVRRAGDVIPFVAGVLDASKRTGAEREIVPPEV 388

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C   +    N +             ++C AQ + RL H+ SR A +I+ +G   ++ 
Sbjct: 389 CPSCGQPLTEQGNSRE-------LFCTNVSCPAQTVRRLIHWASRAAADIDAIGGVWIER 441

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +    A  +  P+D + L +       K+      G+VS T + +SI+  R + L R 
Sbjct: 442 LAE----AGILENPSDFYGLTKE------KLLEFDRIGEVSATRMIESIDASRGVGLRRA 491

Query: 554 IFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           +  L I       A  L +  + S ++ A+               L+ V  +G  +A ++
Sbjct: 492 LIGLAIPMASEGTAARLCRAGFGSLEDVAEA----------GVDGLVAVEDIGPKVAASL 541

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTL------QKI 661
           +E     R    +E L K       R E         + +  K +V TG +      +K+
Sbjct: 542 IEHLT--RLRPELERLRKAGVSLDVREEDLPPVVAAGAPLAGKTVVVTGAISDPRSGEKV 599

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQ-FLFLL 718
            R   Q    + GA  +  +S  TD++I G + G SKL KA++ GV+++++ + +  L+
Sbjct: 600 PRPTFQRLCERAGATTATSVSASTDLLITGADVGASKLTKAEKHGVEVVDQGEIWQQLI 658


>gi|289767058|ref|ZP_06526436.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24]
 gi|289697257|gb|EFD64686.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24]
          Length = 703

 Score =  351 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 195/716 (27%), Positives = 319/716 (44%), Gaps = 88/716 (12%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
               + D  YD L R   A     PD      P+ P  K+ G        V H++P LSL
Sbjct: 39  GSSPLDDDAYDRLARGIAAWEAEHPDEVL---PDSPTGKVAGGAAEG--DVPHTVPMLSL 93

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E+   +   + R   ++      F++ PK+DG  +  RY +G+      RGDG 
Sbjct: 94  DNVFSPEEFTVWTASLARRIDREV---TRFSVGPKLDGLAVAARYREGRLTRLITRGDGT 150

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDVS  I  +  +P  L+  +   +EVRGE+ ++   F   N+  I  G +P+ANPRN
Sbjct: 151 AGEDVSHAIGTVEGLPGTLAEPV--TVEVRGEILMTTAQFEHANEVRIRHGGQPFANPRN 208

Query: 219 AASGILRRLNPTDITRYLNFFVHGL--------GKTSEIFAKGQYEMLQKMRCLGFPVNN 270
           AA+G LR            FF +GL             +      E+++    LG   + 
Sbjct: 209 AAAGTLRAKERAYTVPMT-FFGYGLLALPGTDAALAGRLEELPYSELMETAAGLGVHTSA 267

Query: 271 GVRQ----ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           G         T   +V+   E+ ++R+ LP+ IDG+V K D  + ++  G  +R+PRW I
Sbjct: 268 GTAVPDVVVGTPEQVVARVQEIAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAI 327

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++K    +  TRLL+++  +GRTGI+ P   LEPV I G+ IT ATLHN   I       
Sbjct: 328 AYKLPAVEKITRLLEVEWNVGRTGIIAPRGVLEPVVIEGSTITYATLHNPADITR----- 382

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                 R +R+GD V+V RAG+VIP++   + + R  + QP  FP  CP C S +     
Sbjct: 383 ------RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPEACPRCGSDIDTSEE 436

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
                     RC  G  C    +  L +   RD  +IEGLG  ++    +    A  +  
Sbjct: 437 --------RWRCAQGRNC--HLVASLAYAAGRDQLDIEGLGTTRVVQLVE----AGLVAD 482

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
            AD+F L+R Q         +   G+ S  NL  ++ + +   L R + +LG+R  G  +
Sbjct: 483 LADLFLLRREQL------LALERMGETSTDNLLAALARAKEQPLSRVLCALGVRGTGRSM 536

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           +R +A+Y+ +  +              D  ++ RV  +G   A ++V           ++
Sbjct: 537 SRRIARYFATMDHIRAA----------DAEAMQRVDGIGVEKAPSVVAEIAELA--PLID 584

Query: 627 ALLKEVSPSIGR------------------HEKNVSSEIENKKLVFTGT----LQKIQRH 664
            L                                    +   K+V TG     L+++ R+
Sbjct: 585 RLAAAGVNMTEPGATPPRPADTDGADGATAEAPGDGGPLAGMKVVVTGAMTGNLERLSRN 644

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  E + + G   S+ +S+ T +++ G+  GSK  KA+QLGV++   E+F  L+  
Sbjct: 645 EMNELIERAGGRSSSSVSKNTSLVVAGEGAGSKRAKAEQLGVRLATPEEFAVLVAD 700


>gi|256783179|ref|ZP_05521610.1| DNA ligase [Streptomyces lividans TK24]
          Length = 690

 Score =  351 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 195/716 (27%), Positives = 319/716 (44%), Gaps = 88/716 (12%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
               + D  YD L R   A     PD      P+ P  K+ G        V H++P LSL
Sbjct: 26  GSSPLDDDAYDRLARGIAAWEAEHPDEVL---PDSPTGKVAGGAAEG--DVPHTVPMLSL 80

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E+   +   + R   ++      F++ PK+DG  +  RY +G+      RGDG 
Sbjct: 81  DNVFSPEEFTVWTASLARRIDREV---TRFSVGPKLDGLAVAARYREGRLTRLITRGDGT 137

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDVS  I  +  +P  L+  +   +EVRGE+ ++   F   N+  I  G +P+ANPRN
Sbjct: 138 AGEDVSHAIGTVEGLPGTLAEPV--TVEVRGEILMTTAQFEHANEVRIRHGGQPFANPRN 195

Query: 219 AASGILRRLNPTDITRYLNFFVHGL--------GKTSEIFAKGQYEMLQKMRCLGFPVNN 270
           AA+G LR            FF +GL             +      E+++    LG   + 
Sbjct: 196 AAAGTLRAKERAYTVPMT-FFGYGLLALPGTDAALAGRLEELPYSELMETAAGLGVHTSA 254

Query: 271 GVRQ----ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           G         T   +V+   E+ ++R+ LP+ IDG+V K D  + ++  G  +R+PRW I
Sbjct: 255 GTAVPDVVVGTPEQVVARVQEIAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAI 314

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++K    +  TRLL+++  +GRTGI+ P   LEPV I G+ IT ATLHN   I       
Sbjct: 315 AYKLPAVEKITRLLEVEWNVGRTGIIAPRGVLEPVVIEGSTITYATLHNPADITR----- 369

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                 R +R+GD V+V RAG+VIP++   + + R  + QP  FP  CP C S +     
Sbjct: 370 ------RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPEACPRCGSDIDTSEE 423

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
                     RC  G  C    +  L +   RD  +IEGLG  ++    +    A  +  
Sbjct: 424 --------RWRCAQGRNC--HLVASLAYAAGRDQLDIEGLGTTRVVQLVE----AGLVAD 469

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
            AD+F L+R Q         +   G+ S  NL  ++ + +   L R + +LG+R  G  +
Sbjct: 470 LADLFLLRREQL------LALERMGETSTDNLLAALARAKEQPLSRVLCALGVRGTGRSM 523

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           +R +A+Y+ +  +              D  ++ RV  +G   A ++V           ++
Sbjct: 524 SRRIARYFATMDHIRAA----------DAEAMQRVDGIGVEKAPSVVAEIAELA--PLID 571

Query: 627 ALLKEVSPSIGR------------------HEKNVSSEIENKKLVFTGT----LQKIQRH 664
            L                                    +   K+V TG     L+++ R+
Sbjct: 572 RLAAAGVNMTEPGATPPRPADTDGADGATAEAPGDGGPLAGMKVVVTGAMTGNLERLSRN 631

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  E + + G   S+ +S+ T +++ G+  GSK  KA+QLGV++   E+F  L+  
Sbjct: 632 EMNELIERAGGRSSSSVSKNTSLVVAGEGAGSKRAKAEQLGVRLATPEEFAVLVAD 687


>gi|166215594|sp|Q93IZ8|DNLJ2_STRCO RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
          Length = 700

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 195/715 (27%), Positives = 319/715 (44%), Gaps = 88/715 (12%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
               + D  YD L R   A     PD      P+ P  K+ G        V H++P LSL
Sbjct: 36  GSSPLDDDAYDRLARGIAAWEAEHPDEVL---PDSPTGKVAGGAAEG--DVPHTVPMLSL 90

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E+   +   + R   ++      F++ PK+DG  +  RY +G+      RGDG 
Sbjct: 91  DNVFSPEEFTVWTASLARRIDREV---TRFSVGPKLDGLAVAARYREGRLTRLITRGDGT 147

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDVS  I  +  +P  L+  +   +EVRGE+ ++   F   N+  I  G +P+ANPRN
Sbjct: 148 AGEDVSHAIGTVEGLPGTLAEPV--TVEVRGEILMTTAQFEHANEVRIRHGGQPFANPRN 205

Query: 219 AASGILRRLNPTDITRYLNFFVHGL--------GKTSEIFAKGQYEMLQKMRCLGFPVNN 270
           AA+G LR            FF +GL             +      E+++    LG   + 
Sbjct: 206 AAAGTLRAKERAYTVPMT-FFGYGLLALPGTDAALAGRLEELPYSELMETAAGLGVHTSA 264

Query: 271 GVRQ----ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           G         T   +V+   E+ ++R+ LP+ IDG+V K D  + ++  G  +R+PRW I
Sbjct: 265 GTAVPDVVVGTPEQVVARVQEIAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAI 324

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++K    +  TRLL+++  +GRTGI+ P   LEPV I G+ IT ATLHN   I       
Sbjct: 325 AYKLPAVEKITRLLEVEWNVGRTGIIAPRGVLEPVVIEGSTITYATLHNPADITR----- 379

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                 R +R+GD V+V RAG+VIP++   + + R  + QP  FP  CP C S +     
Sbjct: 380 ------RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPEACPRCGSDIDTSEE 433

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
                     RC  G  C    +  L +   RD  +IEGLG  ++    +    A  +  
Sbjct: 434 --------RWRCAQGRNC--HLVASLAYAAGRDQLDIEGLGTTRVVQLVE----AGLVAD 479

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
            AD+F L+R Q         +   G+ S  NL  ++ + +   L R + +LG+R  G  +
Sbjct: 480 LADLFLLRREQL------LALERMGETSTDNLLAALARAKEQPLSRVLCALGVRGTGRSM 533

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           +R +A+Y+ +  +              D  ++ RV  +G   A ++V           ++
Sbjct: 534 SRRIARYFATMDHIRAA----------DAEAMQRVDGIGVEKAPSVVAEIAELA--PLID 581

Query: 627 ALLKEVSPSIGR------------------HEKNVSSEIENKKLVFTGT----LQKIQRH 664
            L                                    +   K+V TG     L+++ R+
Sbjct: 582 RLAAAGVNMTEPGATPPRPADTDGADGATAEAPGDGGPLAGMKVVVTGAMTGNLERLSRN 641

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  E + + G   S+ +S+ T +++ G+  GSK  KA+QLGV++   E+F  L+ 
Sbjct: 642 EMNELIERAGGRSSSSVSKNTSLVVAGEGAGSKRAKAEQLGVRLATPEEFAVLVA 696


>gi|21225788|ref|NP_631567.1| DNA ligase [Streptomyces coelicolor A3(2)]
 gi|14495032|emb|CAC42149.1| putative DNA ligase [Streptomyces coelicolor A3(2)]
          Length = 723

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 195/715 (27%), Positives = 319/715 (44%), Gaps = 88/715 (12%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
               + D  YD L R   A     PD      P+ P  K+ G        V H++P LSL
Sbjct: 59  GSSPLDDDAYDRLARGIAAWEAEHPDEVL---PDSPTGKVAGGAAEG--DVPHTVPMLSL 113

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E+   +   + R   ++      F++ PK+DG  +  RY +G+      RGDG 
Sbjct: 114 DNVFSPEEFTVWTASLARRIDREV---TRFSVGPKLDGLAVAARYREGRLTRLITRGDGT 170

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDVS  I  +  +P  L+  +   +EVRGE+ ++   F   N+  I  G +P+ANPRN
Sbjct: 171 AGEDVSHAIGTVEGLPGTLAEPV--TVEVRGEILMTTAQFEHANEVRIRHGGQPFANPRN 228

Query: 219 AASGILRRLNPTDITRYLNFFVHGL--------GKTSEIFAKGQYEMLQKMRCLGFPVNN 270
           AA+G LR            FF +GL             +      E+++    LG   + 
Sbjct: 229 AAAGTLRAKERAYTVPMT-FFGYGLLALPGTDAALAGRLEELPYSELMETAAGLGVHTSA 287

Query: 271 GVRQ----ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           G         T   +V+   E+ ++R+ LP+ IDG+V K D  + ++  G  +R+PRW I
Sbjct: 288 GTAVPDVVVGTPEQVVARVQEIAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAI 347

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
           ++K    +  TRLL+++  +GRTGI+ P   LEPV I G+ IT ATLHN   I       
Sbjct: 348 AYKLPAVEKITRLLEVEWNVGRTGIIAPRGVLEPVVIEGSTITYATLHNPADITR----- 402

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
                 R +R+GD V+V RAG+VIP++   + + R  + QP  FP  CP C S +     
Sbjct: 403 ------RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPEACPRCGSDIDTSEE 456

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
                     RC  G  C    +  L +   RD  +IEGLG  ++    +    A  +  
Sbjct: 457 --------RWRCAQGRNC--HLVASLAYAAGRDQLDIEGLGTTRVVQLVE----AGLVAD 502

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
            AD+F L+R Q         +   G+ S  NL  ++ + +   L R + +LG+R  G  +
Sbjct: 503 LADLFLLRREQL------LALERMGETSTDNLLAALARAKEQPLSRVLCALGVRGTGRSM 556

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           +R +A+Y+ +  +              D  ++ RV  +G   A ++V           ++
Sbjct: 557 SRRIARYFATMDHIRAA----------DAEAMQRVDGIGVEKAPSVVAEIAELA--PLID 604

Query: 627 ALLKEVSPSIGR------------------HEKNVSSEIENKKLVFTGT----LQKIQRH 664
            L                                    +   K+V TG     L+++ R+
Sbjct: 605 RLAAAGVNMTEPGATPPRPADTDGADGATAEAPGDGGPLAGMKVVVTGAMTGNLERLSRN 664

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +  E + + G   S+ +S+ T +++ G+  GSK  KA+QLGV++   E+F  L+ 
Sbjct: 665 EMNELIERAGGRSSSSVSKNTSLVVAGEGAGSKRAKAEQLGVRLATPEEFAVLVA 719


>gi|269103205|ref|ZP_06155902.1| DNA ligase [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163103|gb|EEZ41599.1| DNA ligase [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 495

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 196/532 (36%), Positives = 302/532 (56%), Gaps = 41/532 (7%)

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIF 250
           + K  F  LN   +  G K +ANPRNAA+G LR+L+     TR L+F+ + +G       
Sbjct: 1   MPKKGFEQLNQRALKKGEKTFANPRNAAAGSLRQLDSKVTATRPLSFYAYAVGIVEGREL 60

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
              QY+ L +++  GFP++  +R+ ++   ++ Y+  +   R +L YDIDG+V KVD+  
Sbjct: 61  EGSQYDRLCQLKSWGFPMSPEIRRVDSIEEVIRYHQMIGEKRESLEYDIDGVVIKVDKVD 120

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q QLG  AR+PRW I++KF  ++  T L +++ Q+GRTG +TPVA+LEPV +GG  ++N
Sbjct: 121 TQLQLGFVARAPRWAIAYKFPAQEEMTLLNNVEFQVGRTGAITPVAKLEPVFVGGVTVSN 180

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHN D I  L            + VGD V+++RAG+VIP++V ++ + R  DA P  F
Sbjct: 181 ATLHNADEIARL-----------GVMVGDTVIIRRAGDVIPQIVSVVESRRPADASPVIF 229

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP+CQS+V R          A  RCTGGL C AQ+ E LKHFVSR A +++G G++ 
Sbjct: 230 PTECPVCQSKVERIEGE------AVARCTGGLFCQAQRKEALKHFVSRKALDVDGCGEKV 283

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++     E     +  PAD+F L      S   +  +   G  S   L D++   +  +L
Sbjct: 284 IEQLVDRE----MVTTPADLFRL------SAGVVTALDRMGPKSAQKLVDALGNAKETTL 333

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI+SLGIR VG   A +LA Y+ + +                   LI VP VG+I+A 
Sbjct: 334 SRFIYSLGIREVGEATAANLAHYFETLEALMTASK----------DQLIEVPDVGEIVAA 383

Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
            I  F++   N+  V  L       P I +   +V    E K +V TG+L ++ R +A+E
Sbjct: 384 HIFNFFREEHNLAVVNDLRDVGIHWPDIEKVADDVELPFEGKTVVLTGSLSQLSRTEAKE 443

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            + +LGA V+  +S+KTD+++ G+  GSKL KAQ+LG+++ +E+Q +  +Q+
Sbjct: 444 ALQKLGAKVTGSVSKKTDLVVAGEAAGSKLTKAQELGIEVWDEQQLIDFMQR 495


>gi|281212695|gb|EFA86855.1| BRCT domain-containing protein [Polysphondylium pallidum PN500]
          Length = 1835

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 201/777 (25%), Positives = 333/777 (42%), Gaps = 114/777 (14%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PDLARSEDPNGPL 75
           E+  +  EI  ++D YY  S+ +I D +YD L +R   +   F    P          PL
Sbjct: 58  EILKIRDEIKKYNDSYYNKSQSLISDYQYDMLFKRLATLESQFHQRFPHSKMLGQ--SPL 115

Query: 76  NKIGGEM---NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI--------YRFWQKKDDN 124
           N +G  +     S  KV HS+  LSL   ++IE+L+ F  RI                D+
Sbjct: 116 NTVGAPLPQSQSSKSKVEHSVRMLSLNNAYSIEELQTFERRIVADCLHESRGGGDGDGDH 175

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI----------- 173
            I FTLE K DG  ++  YE GK V    RGDG  GEDV+ C                  
Sbjct: 176 QITFTLERKHDGIALSAIYEDGKLVRLVTRGDGIIGEDVTECGNIFINTGLPRELLPGSS 235

Query: 174 --PRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILR------ 225
                 S       EVRGEV +SK   L +N          Y N RN  SGILR      
Sbjct: 236 GGSSNNSPYKKGTFEVRGEVVLSKQQLLEINSSRAKANLPLYKNTRNTVSGILRAGRTIG 295

Query: 226 --RLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVS 283
               +      +    V G    +      Q E L +++ LGF   + V   +    +  
Sbjct: 296 EFDKDLIKFDFFAYQMVSGEESPTTTAITSQSESLAELKRLGFKCGDIVAIRSLAL-VDR 354

Query: 284 YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDID 343
           Y ++++  R +  +DIDG+V KVD   LQ++LGE  R+PRW +++KF   Q  T L +I 
Sbjct: 355 YIDQLEMERPSYKWDIDGIVIKVDSLELQRRLGETERAPRWAVAYKFGASQYLTTLNEIV 414

Query: 344 IQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLV 403
           +Q+GR+G +TPVA ++PV++ G  ++ ATL+N  ++K +           ++R+GDRV++
Sbjct: 415 LQVGRSGKITPVAIVDPVDVHGVTVSRATLNNIQFVKRM-----------NLRLGDRVVI 463

Query: 404 KRAGEVIPKVVDI---------IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK--- 451
           +RAG+VIP +             V+ R           F P C    +R    K  +   
Sbjct: 464 ERAGDVIPYLTRYIDENNADGDQVDNREEMDDTTLARLFNPQCNDGKIRCPCEKKLELFT 523

Query: 452 -LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
              +A     G  C+ Q   ++  FVS+D   + G+G  Q++        A  I    D+
Sbjct: 524 ADDSADHFCMGSECTLQLQGQILWFVSKDGMAMTGIGPSQVEALM----AAGLISDAGDL 579

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
           ++L+ ++     ++  I GF    V N+ ++I   +    E  + +LGI   G    ++L
Sbjct: 580 YSLKDKRD----QMLQIPGFNKKRVDNILEAIETSKQRPFESVLCALGIPGFGKSRCKTL 635

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ--NPRNICAVEAL 628
           AK + ++             +N     +     +GD+    +  F+   +      +++L
Sbjct: 636 AKSFKTFDQL----------SNTSLEDITNRVQLGDLTTYQLYSFFHPYDKAQQLGIDSL 685

Query: 629 LKEV------------------------------SPSIGRHEKNVSSEIENKKLVFTGTL 658
           + ++                              +P+     K++   +  KK+V +GT 
Sbjct: 686 VNKLKSNGIGVEMNKQKSLKSKSTKAAQQSQQPSTPTSKPQNKSLLEMVAGKKVVVSGTF 745

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GSKLEKAQQLGVKIMNEEQF 714
               R +    + Q GA   + +S  TD +IV   P  SK+++A+ L + I++E++ 
Sbjct: 746 SIGSRDEVVTILEQNGAKSQSKVSSATDYLIVSQKPSSSKVKQAESLNIPILSEQEL 802


>gi|260591596|ref|ZP_05857054.1| putative DNA ligase [Prevotella veroralis F0319]
 gi|260536396|gb|EEX19013.1| putative DNA ligase [Prevotella veroralis F0319]
          Length = 676

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 168/708 (23%), Positives = 289/708 (40%), Gaps = 67/708 (9%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            E+ SL ++++   D YY   + I+ + E+DA   R   +            P+ P   +
Sbjct: 3   DEIQSLVEQLNAASDAYYNGREEIMTNYEWDAAFDRLKKLEEE----TGIILPDSPTQNV 58

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
             +      K  H  P LSL K   + +L K+              +    L  K+DG  
Sbjct: 59  SADNLTG-QKEEHEFPALSLAKTKKVAELAKWAE------------NRPIWLSWKLDGLT 105

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + + Y+ GK      RG+GH G +++   +AI  I +   +     + +RGE  IS  DF
Sbjct: 106 LVVTYDNGKLTKVVTRGNGHIGTNITHLSKAIDGILQA--IPYKGHLVIRGEAVISYPDF 163

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEM 257
              N        + YANPRN ASG L   N  +   R++ +    L    E        M
Sbjct: 164 EQFN----MESEEEYANPRNLASGSLTLKNINEVKERHIRWIPFTLVYEEEEIISWGNRM 219

Query: 258 LQKMRCLGFPVNNGVRQANTFHGI-----VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
               +    PV+  + +  T   I                S  PY +DGLV   D+ +  
Sbjct: 220 AWLEQQGFKPVDRELIEQPTEANIQAVIDCWTERVTGKSSSPFPYPVDGLVITYDDTAYA 279

Query: 313 KQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
                      R   + K+ ++ A T L  I+     +  ++PVA  +PV + G  +  A
Sbjct: 280 ATGSVTGHHATRAGYAFKWQDESAETELEYIEWSCAAST-ISPVAVFKPVELEGTTVKRA 338

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           +L N    + L    K          G ++ V +A ++IPKV++++          F  P
Sbjct: 339 SLCNISECERLGIGDK----------GTKIAVIKANKIIPKVINVVERL-----GVFHIP 383

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP+CQS      +  +G             C A+QL++   FVS++  NI+GL +Q +
Sbjct: 384 EVCPVCQSATEVTESESSGTKTLH---CTNTHCPAKQLKKFGRFVSKEGINIDGLSEQTI 440

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
             F         +R  AD+F L        +++  + GFGD SV+ L  +I K RN+   
Sbjct: 441 QKFIN----LGWVREYADLFHLNNH----ASELRTMDGFGDKSVSKLLTAIEKARNVEAH 492

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +F+L I  +G ++   L   Y     F                    +  +G   + +
Sbjct: 493 RLLFALNIPLIGRDVCNRLLSAYQIADLFHTATEATTEDV------FATIAGIGPEKSAS 546

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670
            V + ++  N   ++ LL E++ S        +S  E    V TG +   + R++ + Y+
Sbjct: 547 FVRWMKDKDNYSMMQQLLVELNISQSSSAPTGNS-CEGLTFVITGDVHHYKNRNELKAYI 605

Query: 671 TQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLF 716
              G  V+  +S+ T  +I    ++   K +KA++L + I++EE+F+ 
Sbjct: 606 ENQGGKVTGSVSKSTSFLINNDIESSSGKNKKAKELSIPIISEEEFIA 653


>gi|282858246|ref|ZP_06267432.1| NAD-dependent DNA ligase domain protein [Prevotella bivia
           JCVIHMP010]
 gi|282588955|gb|EFB94074.1| NAD-dependent DNA ligase domain protein [Prevotella bivia
           JCVIHMP010]
          Length = 678

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 161/726 (22%), Positives = 287/726 (39%), Gaps = 73/726 (10%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ ++  K + +L  +++   D YY      + D E+DA   R  A+     ++     P
Sbjct: 1   MTEDK-HKIMEALVLQLNEASDAYYNGKGEAMTDFEWDAAFDRLKALEEELGEVL----P 55

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P N +  +      K  H  P LSL K  +  +L K+                   L 
Sbjct: 56  NSPTNSVSADKLKG-QKEEHEYPALSLAKTKSETELAKWAE------------ERPIWLS 102

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  + + Y+ GK      RG+GH G +++    AI  I   +       I +RGE 
Sbjct: 103 WKLDGLTLVVTYDNGKLTKVVTRGNGHIGTNITHLAAAIDNILPTV--KANGHIVIRGEA 160

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
            IS  DF   N        + YANPRN ASG L   +  +   R+L +    L  T E  
Sbjct: 161 VISYADFEQFN----LESEEEYANPRNLASGSLTLKDINEVKARHLRWIPFSLVHTDEEI 216

Query: 251 AKGQYEMLQKMR------CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                 M    +                          +      + +   PY +DGLV 
Sbjct: 217 ISWGDRMAFLDKLGFNTVERELITLPTAENIEKVIATWTLRVTDTTRKDKQPYPVDGLVI 276

Query: 305 KVDEFSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
             D+               R   + K+ ++   T L  I+     +  ++PVA  +PV +
Sbjct: 277 TYDDTEYAATGSVTGHHATRAGFAFKWQDESVETTLEYIEWSCATST-ISPVAVFKPVEL 335

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  +  A+L N    + L               G +++V +A ++IPKV+ +       
Sbjct: 336 EGTTVKRASLCNISECERLGIGDA----------GTKLMVIKANKIIPKVISV-----TE 380

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
               F+ P+ CP+C        +  +G             C A+QL++   FVS++  NI
Sbjct: 381 CLGSFTIPTTCPVCHQPTQIVESEASGTRTLH---CTNHHCPAKQLKKFARFVSKEGINI 437

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +GL +Q +  F         +   AD+F LQ +       ++ + GFG+ S  NL  +I 
Sbjct: 438 DGLSEQTVQKFIN----LGWVSEYADLFHLQEK----AEALKYMEGFGEKSCDNLLTAIE 489

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI----------IAHNND 593
           K R +  ++ +F+L I  VG ++   L   Y   +   +   N+               +
Sbjct: 490 KSRKVEAKQLLFALSIPLVGKDVCTRLLSAYPLEELINKSRENMVSPTLQRSLFEEPRPN 549

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653
           +      +  +G   + + V + Q+  N   ++ LL+E++ S    E    +  +    V
Sbjct: 550 NEEIFSTIDGIGPEKSASFVGWMQDDSNYAQLQRLLQELTVSQTSSEPK-GNLCQGLTFV 608

Query: 654 FTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMN 710
            TG +   + R++ + Y+   G  V+  +S+ T  +I  D  +   K +KA++L + I++
Sbjct: 609 ITGDVHHYKNRNELKAYIESEGGKVTGSVSKSTHYLINNDVKSTSGKNKKAKELNIPILS 668

Query: 711 EEQFLF 716
           E+ F+ 
Sbjct: 669 EDDFMA 674


>gi|255994850|ref|ZP_05427985.1| DNA ligase [Eubacterium saphenum ATCC 49989]
 gi|255993563|gb|EEU03652.1| DNA ligase [Eubacterium saphenum ATCC 49989]
          Length = 647

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 162/709 (22%), Positives = 298/709 (42%), Gaps = 75/709 (10%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            ++ L   +S  +  YY  +  I+ + EYD L     A+       +       P   +G
Sbjct: 6   RMNELIDILSKANKAYYSDANEIMSNREYDELYDELQALEEE----SGIVLAASPTVNVG 61

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            E + SL K+ H    LSL K  ++++L +++                  L PK+DG  +
Sbjct: 62  YEASSSLEKMAHEKKMLSLNKTKSVDELVEWL------------GEQEGLLSPKLDGLTV 109

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
            I Y++G    A  RGDG  GE ++   +    IP  L +     + +RGE YI+  DF 
Sbjct: 110 VITYDEGSLKLAVTRGDGVEGEVITKNAKTFIGIP--LKIPYAGRLVLRGEAYITYGDFN 167

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258
            LN+E        Y NPRN  SG +R L+P+    R + F V  +    E     + E +
Sbjct: 168 KLNEE--IDDAAKYKNPRNLCSGSVRNLDPSITKERRVRFKVFSMLGGIEHGFNKKRECM 225

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  +GF V +      T   +    N +          +DGLV   D+      LGE 
Sbjct: 226 KWLGDIGFDVVHTEMV--TGENLKDTMNSLMEELQNGDIPVDGLVLTYDDIKTCNLLGET 283

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           A+ P+  I+ K++++   T L  ++    RTG++ PVA   PV I G  +  A LHN D 
Sbjct: 284 AKYPKDSIAFKWSDELYDTELTGVEWNTSRTGLVNPVAVFSPVEISGTTVKRAALHNLDI 343

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           + GL            +  GD++ V +A  +IP+V + I       +    +P  CP+C 
Sbjct: 344 LDGLA-----------LGKGDKIRVYKANMIIPQVYENITR-----SGNIEYPKVCPVCG 387

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             +  +             C    A      +R+ HF  +   NI+G+ ++ ++    + 
Sbjct: 388 CGLKLETEGARVLRCVNDDCPAKNA------KRIVHFAGKSGINIKGISEKTIEKLIAT- 440

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                IR   D+  ++  +     +I  + GF + S  NL  +I+  + ++L+RFI ++ 
Sbjct: 441 ---GIIRNEVDLLDIENYKD----EILKLDGFKEKSFENLKKAIDGAKTMTLQRFISAMA 493

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
              +G   A  +A              +++         +  +  +G+++ ++ +    +
Sbjct: 494 FTGIGYTNAGKIAAALG---------FDVMKLFELTPEKINNIEGLGEVLTESFMAELSD 544

Query: 619 P----RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQL 673
                R    ++              +  + E++ KK V TG +   + R   ++ +   
Sbjct: 545 ENMKRRMREIIKRC------KFKEITRTRNDEVDGKKFVITGNVNIFKNRDDLKQKIEIS 598

Query: 674 GAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  V + +S  TD +I    ++  SK +KA++LG+ I++E+    +L +
Sbjct: 599 GGQVVSSVSSNTDFLINNDRESTSSKNKKAKELGIAIISEKDIAEMLGE 647


>gi|320527941|ref|ZP_08029107.1| NAD-dependent DNA ligase OB-fold domain protein [Solobacterium
           moorei F0204]
 gi|320131567|gb|EFW24131.1| NAD-dependent DNA ligase OB-fold domain protein [Solobacterium
           moorei F0204]
          Length = 658

 Score =  346 bits (887), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 174/713 (24%), Positives = 303/713 (42%), Gaps = 68/713 (9%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S ++  + +  +  +++   D YY      + D E+DAL  R   +             
Sbjct: 1   MSEDKL-ELMRQMVAQLNQAADAYYDGKAEQMTDYEWDALFDRLKKLEEE----TGVVLE 55

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  K+  +      K  H    LSL K    E++ K+                   + 
Sbjct: 56  DSPTMKVSSDHTAG-QKEAHEFLALSLAKTKKPEEVEKWAE------------GKPIWIS 102

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  + + Y+ GK      RGDGH G +++    AI  IP+ +S      + +RGE 
Sbjct: 103 WKLDGLTLVVTYDNGKLSKVVTRGDGHIGTNITHLSSAIHGIPQTISE--KGHLVIRGEA 160

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251
            IS  DF            + YANPRN ASG L   +  ++ +    ++      +E   
Sbjct: 161 VISYEDFNQFV----MESGEDYANPRNLASGSLTLKDIEEVKKRQIHWIPFTLVYTEEDI 216

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM---KSIRSTLPYDIDGLVYKVDE 308
               + +  M  LGF V       +     ++   E    K   +  PY +DGLV   D+
Sbjct: 217 TSWGKRMDYMEKLGFQVVERECVEHPTLANINKEIEQWTKKVTDAINPYPVDGLVVVYDD 276

Query: 309 FSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                          R   + K+ ++   ++L  I+     +  +TPVA  EPV I G  
Sbjct: 277 TEYASGGSVTGHHATRAGFAFKWQDESVLSKLEYIEWSCAAST-ITPVAVFEPVEIEGTT 335

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+L N    K L              VG  V V +A ++IPKV+ +           
Sbjct: 336 VKRASLCNISECKRLGIGD----------VGSEVEVIKANKIIPKVISVKHA-----EGS 380

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
           F  P  CP+C S+ + D++ +  + +         +C A++L++   FVS+   +I+G+ 
Sbjct: 381 FHIPETCPVCHSKTIVDMSERGTETLK----CTNPSCPAKKLKKFNRFVSKAGMDIDGIS 436

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +Q L  F         I    DIF L +       +I ++ GFG+ S TN+ +SI++ R 
Sbjct: 437 EQTLARFINE----GWITKYGDIFRLSKH----HEEITDLEGFGEKSATNIMESIDRARE 488

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           I   + +++L I  +G ++A+ L   Y     F + ++  IA N +       +  +G  
Sbjct: 489 IDESKLVYALNIPLIGKDVAKRLLSVYP----FRELVS--IARNTETTEVFSSIDGIGPE 542

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKI-QRHK 665
            + A V + ++P NI  +E LL E++    R    +S  + E    V TG +     R++
Sbjct: 543 KSNAFVSWCKDPENISQLEDLLDEITLQ--RTNTVLSGNLCEGLTFVVTGDVHHYANRNE 600

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716
            + Y+   G  V+  +S+ T+ +I  D  +  SK  KA+QL + I++EE+F+ 
Sbjct: 601 LKAYIESQGGKVTGSVSKSTNYLINNDVTSSSSKNTKAKQLNIPILSEEEFIA 653


>gi|303281478|ref|XP_003060031.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458686|gb|EEH55983.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 887

 Score =  346 bits (887), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 235/827 (28%), Positives = 370/827 (44%), Gaps = 133/827 (16%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
            AL   +    ++SL + IS  D+ Y+  + P+  D+ YDA + R +A+    P + R  
Sbjct: 75  SALPASEVPAAMASLAEFISRADEAYHNDADPVASDAAYDATRLRLEALEALHPAMIR-- 132

Query: 70  DPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----- 122
             + P+  +G +     +L +V H++P  SL   ++ +D+R F+ R+ R     +     
Sbjct: 133 -EDSPIGAVGAKPAAWSALPQVEHAVPMRSLGNCFDDDDVRAFVARVTRALGPPERFDDD 191

Query: 123 -DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LS 178
               + F  EPKIDG   ++RY  G  V AA RGDG  GEDV+  I  IP  P      +
Sbjct: 192 ARAPLRFCAEPKIDGASASLRYVDGVLVVAASRGDGEVGEDVTRQIGGIPGAPTTLTGRA 251

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR-----LNPTDIT 233
            + P  +E+RGEV+I+ +DF ALN    A G   + + RNAA+G +RR      +  D  
Sbjct: 252 GDWPATLEIRGEVFIADDDFAALNARREARGMPTFKSARNAAAGAMRRLEPPSRDGADAG 311

Query: 234 RYLNFFVHGLGKTSE----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM- 288
           RYL F  +G G+       +    Q   L  +  LG      +         +   +   
Sbjct: 312 RYLRFLAYGWGEVKPQTELLPWSSQRAFLASLPALGLSPVPTLGPITDDVAALVAGSHAA 371

Query: 289 -KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347
            +  R++L Y +DG+VYKVD+ + Q+ LG  +R+PRW  +HKFA + A T L  +D+Q+G
Sbjct: 372 LERDRASLGYRVDGVVYKVDDVASQRILGADSRAPRWATAHKFAAETAVTTLRAVDVQVG 431

Query: 348 RTGILTPVARLE-PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRA 406
           RTG LTPVA L+ PV +GGA +T ATLHN + +             + +R+G RV+V+RA
Sbjct: 432 RTGALTPVATLDPPVALGGATVTRATLHNFEDVAR-----------KGLRLGARVVVERA 480

Query: 407 GEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV------------------------- 441
           G+VIP+VV ++       A   + P+ CP C S V                         
Sbjct: 481 GDVIPRVVRVVAEGEEEGA-VVATPTRCPACGSAVSKTPLAASVKCPKKRLSSPYESGDA 539

Query: 442 -------VRDLNP-------KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                  V D +         +    A  RCTGG  C AQ LER+ HF SRDA ++ GL 
Sbjct: 540 ASSSFAAVDDESEDATSSPSSSSSSAAVLRCTGGWRCPAQALERVAHFASRDALDVRGLA 599

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS--------------------------T 521
           ++Q+         A  I  PAD+FT++ R +                            T
Sbjct: 600 RKQIADLLD----AGVIASPADLFTMRARFEHLGVDPDASGEDDDARGDGGGVAVPEFWT 655

Query: 522 TKIENILGFGDVSVTNLYDSINK-RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580
                  G    S   L+D++++    + L RFI+SLGI  VG   A+ L++ Y +   F
Sbjct: 656 YASGKDEGKLKRSAKKLFDALDETAAGVPLHRFIYSLGIPQVGLTTAKLLSRKYRTLDAF 715

Query: 581 AQEINNIIAHNNDDWL---------SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
                   A                ++  +  +G ++A  I EF+    N+  V+ +L+ 
Sbjct: 716 RDAAEEAAAAKAAASADAAASTEAPAMTDIDGIGPVVAATIGEFWSERANVNVVDDMLRN 775

Query: 632 VSP---------------SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                             +      + +  +    +V TG +  + R +A + V   G  
Sbjct: 776 GVVVSDDASPPDASDASDASNAAAASATGPLTGYAVVVTGAVPGMTREEAFDAVAAAGGS 835

Query: 677 VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
               +S KT +++VG+  G  K E A+  GV +++ E FL +L    
Sbjct: 836 PQKAVSGKTHVLVVGEGAGRRKAEAAEARGVAVIDAEAFLRVLAGEE 882


>gi|288925794|ref|ZP_06419725.1| DNA ligase [Prevotella buccae D17]
 gi|288337449|gb|EFC75804.1| DNA ligase [Prevotella buccae D17]
          Length = 654

 Score =  346 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 160/703 (22%), Positives = 280/703 (39%), Gaps = 64/703 (9%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +    + ++   D YY     ++ D E+DAL  R   +     +      P+ P  K+  
Sbjct: 1   MRQFVERLNAASDAYYNGQPELMTDYEWDALFDRLRQLEEETGE----TLPDSPTAKVSA 56

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +      K  H  P LSL K    E+L K+                   L  K+DG  + 
Sbjct: 57  DDVKG-QKEEHEFPALSLAKTKRPEELVKWAE------------GRPIWLSWKLDGLTLV 103

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
             Y+ G+      RG+GH G +++   +AI  +P    +       +RGE  IS  DF  
Sbjct: 104 ATYDGGRLTKVVTRGNGHIGTNITHLAQAINGLP--ARIKSAGHTVIRGEAVISYEDFER 161

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
            N        + YANPRN ASG L   +  +   R++ +    L  T E        M  
Sbjct: 162 FN----MESDEEYANPRNLASGSLTLKDVNEIKQRHIRWIPFTLVYTDEEIDAWGKRMDW 217

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEM--KSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
                  PV   +    T   + +       K      PY +DGLV   D+ +       
Sbjct: 218 LEANGFKPVERELIANPTLEEVETVIARWTEKVTHRINPYPVDGLVISYDDTAYAATGAV 277

Query: 318 RARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
                 R  ++ K+ ++ A T L  ++     T  ++PVA   PV + G  +  A+L N 
Sbjct: 278 TGHHATRAGLAFKWQDEAAETELDHVEWS-CATNTISPVAVFRPVELEGTTVKRASLCNI 336

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
              + L   G           G R+ V +A ++IPKV+ +I          F  P  CP+
Sbjct: 337 SECRRLGIGGS----------GTRLSVIKANKIIPKVIKVI-----ETVGEFDIPGKCPV 381

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +    +++           CT     + Q  +  +   S++A NI+G+ +Q L  F  
Sbjct: 382 CCAPT--EISISGMSDTETLHCTNDACPAKQLKKFTRFV-SKEAMNIDGISEQTLAKFIN 438

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +   AD++ L+  Q+    ++  + GFG+ S  N+  S+ K R+    R +F+
Sbjct: 439 ----LGWVGEYADLYHLREHQR----ELAGLEGFGERSAANIMASVEKSRDAEAHRLLFA 490

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           L I   GA++ + L   Y      +           ++      +P +G   + + + + 
Sbjct: 491 LSIPLCGADVCKRLLSAYPLADLLSTA------RTVENLDHFAHIPGIGPEKSASFINWN 544

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGA 675
           ++  N   V+ LL E+  S    E    ++      V TG +   + R++ + Y+   G 
Sbjct: 545 RSQANQQLVDHLLCEIRVS-QVSEAPQGNKCAGLTFVITGDVYHFKNRNELKSYIESEGG 603

Query: 676 VVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716
            V+  +S  T  +I  D  +   K +KA+ LG++I++E+ F+ 
Sbjct: 604 KVAGSVSGATSFLINNDVKSTSGKNKKAKLLGIEIISEDDFIS 646


>gi|85713360|ref|ZP_01044373.1| NAD-dependent DNA ligase [Idiomarina baltica OS145]
 gi|85692818|gb|EAQ30803.1| NAD-dependent DNA ligase [Idiomarina baltica OS145]
          Length = 449

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 185/471 (39%), Positives = 270/471 (57%), Gaps = 28/471 (5%)

Query: 12  LSIEQ-ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
           +S      + +  LEQ+++ ++  YY+  +P I DSEYD L R    +    P+L     
Sbjct: 1   MSRSSTVEQRMRELEQQLTRYNKEYYELDEPTIPDSEYDKLFRELQTLEANNPELK---S 57

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  K+G +   +   VTH +P LSL+  ++ E+   F  RI +        +  F  
Sbjct: 58  QHSPTEKVGSKPLDAFTSVTHELPMLSLDNAFSSEEFSAFAERIQQRVDSSV--AWAFCC 115

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           EPK+DG  ++I YE G+ V AA RGDG+SGED++A ++ I  +P  LS + PE +EVRGE
Sbjct: 116 EPKLDGLAVSILYENGQLVRAATRGDGYSGEDITANVKTIKNVPLQLSDDAPERLEVRGE 175

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLG----K 245
           V++  + F   ND       K +ANPRNAA+G LR+L+      R L+F+ + LG    +
Sbjct: 176 VFMMTDAFERFNDNARKRDEKVFANPRNAAAGSLRQLDSRITAKRPLHFYAYSLGVVSEQ 235

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
             E  A   YE LQ++   G P+N+ V++  +     +YY  M   R  L Y+IDG+VYK
Sbjct: 236 DQEQLADSHYERLQQLSAWGLPINDEVKRVESVEACETYYQAMLEKRDRLRYEIDGIVYK 295

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD   +Q +LG  AR+PRW I+ KF  ++  TR+  +D Q+GRTG +TPVARLEPV++GG
Sbjct: 296 VDSIRMQNELGFVARAPRWAIARKFPAQEQLTRITGVDFQVGRTGAITPVARLEPVSVGG 355

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++NATLHN D +  L            + +GD V ++RAG+VIP+VV ++ +ER  DA
Sbjct: 356 VTVSNATLHNADEVARL-----------GVMIGDTVSIRRAGDVIPQVVSVLESERPEDA 404

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           Q   FPS CP+C S V R          A  RC+GGL C+AQ+ E +KHF 
Sbjct: 405 QAIEFPSHCPVCDSEVERIEGE------AVARCSGGLICAAQRKEAIKHFA 449


>gi|196234150|ref|ZP_03132983.1| DNA ligase, NAD-dependent [Chthoniobacter flavus Ellin428]
 gi|196221801|gb|EDY16338.1| DNA ligase, NAD-dependent [Chthoniobacter flavus Ellin428]
          Length = 658

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 205/665 (30%), Positives = 317/665 (47%), Gaps = 87/665 (13%)

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
               + + +EPK+DG  +++ YE G F   A RGDG  G++++  ++ + +IP  L    
Sbjct: 3   PGEQLEWLVEPKVDGLAVSLLYENGVFTRGATRGDGERGDEITDNLKTLRSIPLRLHGKG 62

Query: 182 -PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            PE++EVRGEVY+    F  + +EMIA G +P+AN RN A+G L++L+P     R L   
Sbjct: 63  APEVLEVRGEVYLPVAGFQRIREEMIAAGEEPFANARNTAAGTLKQLDPALVAKRPLEIV 122

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           ++GLG+ S      Q  +L+ M+  G       R  +T   ++   +E+ SIR    ++ 
Sbjct: 123 LYGLGEISVDPPPTQAALLEWMKAFGLRTPKFTRVCHTAEEVMKAIDELDSIRDGFGFET 182

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG V K++    ++++G  +R+P+W  + K+  +QA T L  I IQ+GRTG+LTPVA L 
Sbjct: 183 DGAVIKLNSIEQRERVGYHSRAPKWAKAWKYVSEQAETVLESITIQVGRTGVLTPVAELR 242

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G+ I+ ATLHNED IK            +DIR+GD VL+++AGEVIP VV +++ 
Sbjct: 243 PVFLRGSTISRATLHNEDEIKR-----------KDIRIGDTVLIEKAGEVIPAVVKVVLE 291

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
           +R   AQPF FP  CP+C S+  RD N       A   C   + C AQ   RL++F  R 
Sbjct: 292 KRPSSAQPFPFPHECPVCHSQAKRDPN------FAVWVC-ENVNCPAQLTRRLEYFAKRG 344

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL--GFGDVSVTN 537
           A +I+GLG    D   +       +R P D+F L+  Q  +     +     FG+ + T 
Sbjct: 345 ALDIDGLGGIVADKLVERS----LVRDPLDLFELKLEQLATLNLGTDDEPRVFGEKNATK 400

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI------------- 584
           + ++I + +   L R++ +L I  VG E A  LAK++ S +                   
Sbjct: 401 VTEAIKRAKTQPLARWLHALAIPEVGEETAHDLAKHHPSLEAVRDSAMLRDVVALDRLHG 460

Query: 585 ---------NNIIAHNNDDWLSLIRVPLVGDIIAQA-------IVEFYQNPRNI------ 622
                             +   L       ++IA+A       +   +  P         
Sbjct: 461 EAEESNPRGKRNKDKTELEKQKLASRH--AEVIAEANAAGRRLLEAGFAAPAKKKSATDA 518

Query: 623 ------------------------CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
                                     ++ L        G            K  V TGTL
Sbjct: 519 DVVTVVGPVVAQAALHWFAGESGHETLKRLHHLHIAPKGATPGAGDQAFAGKTFVLTGTL 578

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +K+ R+ A E +  LG  VS+ +SRKT  ++ G   GSKLE AQ LGV +++E+QFL +L
Sbjct: 579 EKMGRNAAAEKIRALGGNVSSSVSRKTSYVVAGPGAGSKLEDAQSLGVTVLSEDQFLKML 638

Query: 719 QQYNT 723
                
Sbjct: 639 ADSGA 643


>gi|302526819|ref|ZP_07279161.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4]
 gi|302435714|gb|EFL07530.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4]
          Length = 663

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 202/711 (28%), Positives = 322/711 (45%), Gaps = 77/711 (10%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
             R+ +  L  +I    D YY+   P + D+EYDA++     +  A P+LA   DPN PL
Sbjct: 2   DVRERIQELADQIVALRDAYYR-GSPAVADAEYDAIEDELRGLIEASPELA--PDPN-PL 57

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +++GG   L    + HS P LSLEK    E +  F  R                + PK+D
Sbjct: 58  DQVGGPAVLH-APIRHSRPMLSLEKATKPEQVEAFFDR---------FPGQAVVVMPKLD 107

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + YE G+   A  RGDG +G+DV+  +RA+           P  +EVRGE  + +
Sbjct: 108 GLSLALVYEDGRLARAVTRGDGTTGDDVTMLVRALTDGVPHQVSA-PGRVEVRGEAVMLR 166

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254
           + F A N    A   KP  NPRNAA+G LR  +P     R L FF   L           
Sbjct: 167 STFAAYN---TAHPDKPLINPRNAAAGTLRAKDPAAVAERRLRFFAFDLDTEPGSAETDL 223

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
              L  +          +R+        +    ++  R+ L YDIDG V ++ + +    
Sbjct: 224 GSGLLALGF----TAADMRRCADAASAQAVITAIEQQRNDLDYDIDGAVLRLADRAAYAA 279

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
            G R+ SPR  +++KFA ++ +T L D+   +G+TG + PVA LEPV +GG  +T ATL 
Sbjct: 280 AGTRSSSPRGALAYKFAAEEKTTVLSDVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATLA 339

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI-IVNERHPDAQPFSFPSF 433
           N++ I+            R I++GD VLV+RAG+VIP V  +   ++R    +    PS 
Sbjct: 340 NQEVIR-----------ARGIKIGDTVLVRRAGDVIPFVAGVLDESKRTGAEREIVPPST 388

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C+  +    N +             ++C AQ + RL H+ SR A +I+ +G   ++ 
Sbjct: 389 CPSCEQPLTEQGNSRE-------LFCTNVSCPAQTVRRLIHWASRAAADIDAIGGVWIER 441

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +    A  +  P+D + L +       ++      G+VS T + +SI+  R + L R 
Sbjct: 442 LAE----AGILEHPSDFYRLTKE------RLLEFDRIGEVSATRMIESIDASRQVGLRRA 491

Query: 554 IFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           +  L I       A  L +  + S +                   L+ V  +G  +A ++
Sbjct: 492 LIGLAIPMASEGTAARLCRAGFASLEAVLDA----------GVDGLVEVEDIGPKVAASL 541

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTL------QKI 661
           VE     R    +E L +         E         + +E K +V TG +      +K+
Sbjct: 542 VEHLT--RLRPELERLRERGVSLDVLEEDLPPAVVAGAPLEGKTVVVTGAISDPRSGEKV 599

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711
            R   Q      GA  ++ +S  TD++I G + G SKL KA++LGV+++++
Sbjct: 600 PRPTFQRLCETAGATTASSVSASTDLLITGADVGASKLTKAEKLGVEVVDQ 650


>gi|307565636|ref|ZP_07628114.1| NAD-dependent DNA ligase domain protein [Prevotella amnii CRIS
           21A-A]
 gi|307345668|gb|EFN91027.1| NAD-dependent DNA ligase domain protein [Prevotella amnii CRIS
           21A-A]
          Length = 676

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 165/726 (22%), Positives = 291/726 (40%), Gaps = 72/726 (9%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E  RK +  L   ++   D YY     I+ D E+DA       I            P+ P
Sbjct: 3   ENKRKRMEELVLCLNNASDAYYNGKGEIMTDFEWDAAFDELKKIEKE----LGIILPSSP 58

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
            N +  +      K  H  P LSL K  + E L K+              +    L  K+
Sbjct: 59  TNNVSADNITG-KKEEHEYPALSLAKTKSEEVLVKWAA------------NRPIWLSWKL 105

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  + + Y++GK      RG+GH G +++    AI  I    ++N  E + +RGE  IS
Sbjct: 106 DGLTLVVTYDEGKLTKVVTRGNGHIGTNITHLASAIKGIL--PTINTKEHLVIRGEAVIS 163

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKG 253
             DF   N        + YANPRN ASG L   +  +  +R+L +    L          
Sbjct: 164 YADFEIFN----MESEEEYANPRNLASGSLTLKDINEVKSRHLQWKPFTLVHCDRTIISW 219

Query: 254 QYEMLQK------MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
              M              F     ++         +      + +   PY +DGLV   D
Sbjct: 220 GERMSFLDSLGFNTVEREFIAIPSIKNIEDVIAAWTQRVTDSARKDKQPYPVDGLVITYD 279

Query: 308 EFSLQKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +               R  ++ K+ ++   T L  I+     +  ++PVA   PV I G 
Sbjct: 280 DTDYAATGSVTGHHATRAGLAFKWQDESMETELKFIEWSCATST-ISPVAVFAPVEIEGT 338

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++  A+L N    + L               G +++V +A ++IPKV+ +          
Sbjct: 339 IVKRASLCNISECERLGIGDA----------GTKIMVIKANKIIPKVICVSKRI-----G 383

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
            F  PS CP+CQ       N K+G       CT     + Q  ++L  FVS++  NI+GL
Sbjct: 384 SFLIPSVCPVCQCPTEIVENEKSGTRT--LHCTNHYCPAKQL-KKLARFVSKEGVNIDGL 440

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            +Q +  F         ++  +DIF      +    +++ I GFG  S  NL+ +I K R
Sbjct: 441 SEQTMQKFIN----LGWVKEYSDIFQ----LKKKEKELKQIDGFGTKSCENLFSAIEKSR 492

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN-----NDDWLS---- 597
            +  ++ +++L I  +G ++   L   Y S +            +     N+ +      
Sbjct: 493 IVEAKQLLYALSIPLIGKDVCNRLLSTY-SLEELISMSRPTTIASQQLLFNEAYADTETI 551

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
              +  +G   + + V + ++  N   ++ LL+E++      E    S  +    V TG 
Sbjct: 552 FSTIAGIGPEKSTSFVRWMRDENNYTQLQHLLQELTIKQTTTEIKGKS-CKGLTFVITGD 610

Query: 658 LQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQF 714
           +   + R++ + Y+   G  V+  +S+ T+ +I    ++  +K +KA++L + I++E+ F
Sbjct: 611 VYHYKNRNELKAYIESEGGKVTGSVSKNTNYLINNDTESISNKNKKAKELNIPIISEDDF 670

Query: 715 LFLLQQ 720
           + L  +
Sbjct: 671 ISLFNK 676


>gi|182434930|ref|YP_001822649.1| putative NAD-dependent DNA ligase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|254778149|sp|B1VUC2|DNLJ1_STRGG RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|178463446|dbj|BAG17966.1| putative NAD-dependent DNA ligase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 719

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 195/721 (27%), Positives = 313/721 (43%), Gaps = 94/721 (13%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
            +  + D  YD L R   A     P+   +   + P  K+ G   +    V H++P LSL
Sbjct: 42  GESALDDDAYDRLARGIAAYEADHPEEVLA---DSPTGKVAGGAAVG--DVPHTVPMLSL 96

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E    +   + R   +       +++EPK+DG  +  RY  G+F     RGDG 
Sbjct: 97  DNVFSAEQFVTWTASLERRIGRPV---TAWSVEPKLDGLAVAARYRDGRFERLITRGDGT 153

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDVS    A+  +P  L+  +   IEVRGE+ ++   F   N      G  P+ANPRN
Sbjct: 154 AGEDVSHAAGAVVGLPERLAEPV--TIEVRGEILMTNEQFAQGNAIRTEHGGAPFANPRN 211

Query: 219 AASGILRRLNPTDITRYLNFFVHGLGKTSE------IFAKGQYEMLQKMRCLGFPVNNGV 272
            A+G LR  +         F    L           +      E+L  +  LG     G 
Sbjct: 212 GAAGTLRAKDRAYRVETTFFAYGALPLPDSGELGEALAELPHSEVLAYVAGLGVHTAAGT 271

Query: 273 RQANTF----HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
             A         + +  + + ++R+ LP+ IDG+V K D  + Q++ G   R+PRW +++
Sbjct: 272 AVAPLRATTVEEVQARVDGIGALRAALPFGIDGIVIKADLAADQQEAGSGTRAPRWAVAY 331

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           K    +  TRLL ++  +GRTGI+ P A LEPV I G+ +  ATLHN   I         
Sbjct: 332 KLPAVEKITRLLAVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADITR------- 384

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
               RD+R+GD+V+V +AG++IP++   +V+ R  D  P +FP  CP C S +       
Sbjct: 385 ----RDLRLGDQVMVYKAGDIIPRIEAPVVHLRTGDETPIAFPESCPQCGSEIDASEQ-- 438

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508
                   RCT G  C  + +  + +   RD  +IEGLG  ++         A  +   A
Sbjct: 439 ------RWRCTRGRDC--RLVASVSYAAGRDQLDIEGLGSTRVVQLVD----AGLVADFA 486

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           D+FTL+R Q         +   G+ S  NL  +I   R   L R   +LG+R  G  ++R
Sbjct: 487 DLFTLRREQL------LALDRMGETSTDNLLAAIETARTRPLSRVFCALGVRGTGRSMSR 540

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            +A+++ +                 D  SL RV  +G   A A+V           +  L
Sbjct: 541 RIARHFATMDRIVAA----------DAESLQRVDGIGKEKAAAVVAELVELA--PLIGKL 588

Query: 629 LKEVSPSIGR---------------------------HEKNVSSEIENKKLVFTGT---- 657
           +                                         +  +    +V TG     
Sbjct: 589 VAAGVSMTEPGATPPPDPGTEEAAAPATADAGAPGGDAATGSALPLAGMTVVVTGAMSGA 648

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L+K+ R++  E + + G   S+ +SR+T +++ G+  GSK  KA+ LGV+I   E+F  L
Sbjct: 649 LEKLSRNQMNELIERAGGKSSSSVSRRTTLLVAGEKAGSKRAKAEDLGVRIAVPEEFAEL 708

Query: 718 L 718
           +
Sbjct: 709 V 709


>gi|309805867|ref|ZP_07699902.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 03V1-b]
 gi|308167776|gb|EFO69920.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 03V1-b]
          Length = 567

 Score =  341 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 184/601 (30%), Positives = 300/601 (49%), Gaps = 44/601 (7%)

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           + + +E KIDG  +++ Y+ GK V A+ RG+GH GEDV+A    I  IP+ L   I   I
Sbjct: 6   VDYNVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKI--DI 63

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245
           EVRGE Y+ K  F  LN E    G   +ANPRNAA+G LR+L+     +           
Sbjct: 64  EVRGECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWV 123

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                   Q++ +  M  LGF  N    + ++ + +  + ++  + RS L Y IDG+V K
Sbjct: 124 NPPETITSQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLK 183

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
           VD+ +LQ +LG   + PRW I++KF  ++  T + +I   +GRTG++TP A ++PVN+ G
Sbjct: 184 VDDLALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAG 243

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
            +++ A LHN D ++            +DIR+GD VL+ +AG++IP++  +++N+R   +
Sbjct: 244 TVVSRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQAS 292

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
            P+  P  CP C   +V   +        A RC   + C AQ  E + HF SR A NI G
Sbjct: 293 LPYEIPKICPSCNQNLVHLKDE------VALRCINPM-CPAQVEEGITHFASRQAMNIVG 345

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           LG + +            +   AD++ L   Q         +  F D S+ NL ++I   
Sbjct: 346 LGPKIVRQLI----ALHLVNDIADLYFLSAAQL------AKLDHFKDKSIQNLLNAIENS 395

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +  S+E  +F LGI HVGA+ AR +A+ +       +               L+++  +G
Sbjct: 396 KQNSVELLLFGLGIDHVGAKAARLIAQKFHDLNTIREC----------SIADLMQIDTIG 445

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKI 661
             IA+++V++++       ++ L               +    +  + K +V TG L   
Sbjct: 446 QAIAESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKEKNVVLTGKLAHY 505

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            R    + +T LGA V + +S+ TD +I GD  GSK  +AQQL + ++ E++ +  L   
Sbjct: 506 SRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVIAKLNSQ 565

Query: 722 N 722
            
Sbjct: 566 K 566


>gi|283769205|ref|ZP_06342109.1| NAD-dependent DNA ligase domain protein [Bulleidia extructa W1219]
 gi|283104181|gb|EFC05560.1| NAD-dependent DNA ligase domain protein [Bulleidia extructa W1219]
          Length = 656

 Score =  339 bits (870), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 162/711 (22%), Positives = 294/711 (41%), Gaps = 66/711 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++ + +L Q+++   + YY   + I+ D E+D L     A+            P+ P  K
Sbjct: 4   KERMLALIQQLNEASNAYYNGQREILSDQEWDRLFDELKALEEQ----TGLILPDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +  +  +   K  H  P LSL K  ++ +L K+                   +  K+DG 
Sbjct: 60  VSADEIVG-QKEIHEFPALSLAKTKSVNELVKWAD------------GHPIWMSWKLDGL 106

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YEKGK      RGDGH G +++  +  +  IP    +  P  + VRGE  IS  D
Sbjct: 107 TLVVTYEKGKLEKVVTRGDGHVGTNITHLVDGLFGIP--KEIRYPGRLIVRGEAIISYVD 164

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256
           F            + YANPRN ASG L     +++  R ++F    L    +        
Sbjct: 165 FEQYV----RETGENYANPRNLASGSLSLKKASEVLERKIHFRPFTLVHCDQEINSWGDR 220

Query: 257 MLQKMRCLG--FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           M    +            + +      V      K  +   PY +DGLV   ++      
Sbjct: 221 MGFLTKLGFDVVEHTFIEKPSEESVQKVLKQFSEKVKQRKNPYPVDGLVIVYEDIQYASS 280

Query: 315 LGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                    R  ++ K+A++   ++L+ ++     +  +TPVA  EPV + G  +  A+L
Sbjct: 281 GTVTGHHATRSGLAFKWADQSKLSKLIRVEWSNAIST-ITPVAVFEPVELEGTTVQRASL 339

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
            N    + L               G  V V +A  +IPKV+ +              P+ 
Sbjct: 340 ANISECERLGIGSG----------GTEVEVIKANMIIPKVISV-----VKKVGNLEIPTL 384

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP+C       ++  +              C A+ L++   FVS+   +I+G+ +  L  
Sbjct: 385 CPVCGKPTKIHVSEISETKT---LKCSNAHCPAKALKKYVRFVSKQGMDIDGISEATLST 441

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F         I+   DI+ L+ R++     IEN+ GFG  S  N+  S+ K + +  ++F
Sbjct: 442 FIAQ----GWIQNYGDIYRLKDRKE----AIENLDGFGLKSAENILTSLEKAQVVRGDKF 493

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +F+L I  VG ++A  L + Y         +  I      +      +  +G   ++A V
Sbjct: 494 LFALSIPLVGIDVASRLLRVYP-------LMELITLAKEKELDFFSHIDGIGPQKSEAFV 546

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQ 672
            + ++  N   +E LL  ++     H+ +  S ++    V TG +   + R++ +E+++ 
Sbjct: 547 RWMKDLNNQKEMEDLLSFLTIE-DLHKVSHDSVLDGLTFVVTGEVHYFKNRNELKEWISA 605

Query: 673 LGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL-FLLQQ 720
            G  V++++S  TD +I  D  +  SK  KA+ LG+ I++E  F+   + +
Sbjct: 606 RGGKVASVVSGSTDFLINNDIHSTSSKNAKAKSLGIPILSEADFMTRFIDK 656


>gi|254233094|ref|ZP_04926421.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis C]
 gi|124602153|gb|EAY61163.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis C]
          Length = 495

 Score =  339 bits (869), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 156/523 (29%), Positives = 253/523 (48%), Gaps = 31/523 (5%)

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
             ++  G+ P+ANPRN+A+G LR+ +P     R L    HGLG          ++    +
Sbjct: 1   SSLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPATLHQAYLAL 60

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           R  G PV+     A    G+    +     R  + ++IDG+V KVDE +LQ++LG  +R+
Sbjct: 61  RAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRA 120

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ +  ATLHN   IK 
Sbjct: 121 PRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNASEIKR 180

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      + + +GD V++++AG+VIP+V+  +V  R    + F  P+ CP C S +
Sbjct: 181 -----------KGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPECGSPL 229

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
             +      +  A  RC     C  Q  ER+ H  SR+  +IE LG +      +++   
Sbjct: 230 APE-----KEGDADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAK--- 281

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             I    ++F L  R    T       G    +   L  +++K +   L R + +L IRH
Sbjct: 282 -VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALSIRH 340

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG   AR+LA  + S    A                L  V  VG  IA A+ E++    +
Sbjct: 341 VGPTAARALATEFGSLDAIAAA----------STDQLAAVEGVGPTIAAAVTEWFAVDWH 390

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
              V+         +   +++V   +    +V TG+L    R  A+E +   G   +  +
Sbjct: 391 REIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGSV 450

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL     +
Sbjct: 451 SKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLADGPAS 493


>gi|326775447|ref|ZP_08234712.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1]
 gi|326655780|gb|EGE40626.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1]
          Length = 712

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 196/721 (27%), Positives = 315/721 (43%), Gaps = 94/721 (13%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
            +  + D  YD L R   A     P+   +   + P  K+ G   +    V H++P LSL
Sbjct: 35  GESALDDDAYDRLARGIAAYEADHPEEVLA---DSPTGKVAGGAAVG--DVPHTVPMLSL 89

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E    +   + R   +       +++EPK+DG  +  RY  G+F     RGDG 
Sbjct: 90  DNVFSAEQFVTWTASLERRIGRPV---TAWSVEPKLDGLAVAARYRDGRFERLITRGDGT 146

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDVS    A+  +P  L+  +   IEVRGE+ ++   F   N      G  P+ANPRN
Sbjct: 147 AGEDVSHAAGAVVGLPERLAEPV--TIEVRGEILMTNEQFAQGNAIRTEYGGAPFANPRN 204

Query: 219 AASGILRRLNPTDITRYLNFFVHGLGKTS------EIFAKGQYEMLQKMRCLGFPVNNGV 272
            A+G LR  +         F    L           +      E+L  +  LG     G 
Sbjct: 205 GAAGTLRAKDRAYRVETTFFAYGALPLPDSGELGETLAELPHSEVLAYVAGLGVHTAAGT 264

Query: 273 RQAN----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
             A     T   + +  + + ++R+ LP+ IDG+V K D  + Q++ G   R+PRW +++
Sbjct: 265 AVAPLRATTVEEVQARVDGIGALRAALPFGIDGIVIKADLAADQQEAGSGTRAPRWAVAY 324

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           K    +  TRLL ++  +GRTGI+ P A LEPV I G+ +  ATLHN   I         
Sbjct: 325 KLPAVEKITRLLAVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADITR------- 377

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
               RD+R+GD+V+V +AG++IP++   +V+ R  D  P +FP  CP C S +       
Sbjct: 378 ----RDLRLGDQVMVYKAGDIIPRIEAPVVHLRTGDETPIAFPESCPQCGSEIDASEQ-- 431

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508
                   RCT G  C  + +  + +   RD  +IEGLG  ++         A  +   A
Sbjct: 432 ------RWRCTRGRDC--RLVASVSYAAGRDQLDIEGLGSTRVVQLVD----AGLVADFA 479

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           D+FTL+R Q      +  +   G+ S  NL  +I   R   L R   +LG+R  G  ++R
Sbjct: 480 DLFTLRREQ------LLALDRMGETSTDNLLAAIETARTRPLSRVFCALGVRGTGRSMSR 533

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            +A+++ +                 D  SL RV  +G   A A+V           +  L
Sbjct: 534 RIARHFATMDRIVAA----------DAESLQRVDGIGKEKAAAVVAELVELA--PLIGKL 581

Query: 629 LKEVSPSIGR---------------------------HEKNVSSEIENKKLVFT----GT 657
           +                                         +  +    +V T    G 
Sbjct: 582 VVAGVSMTEPGATPPPDPGTEEAAAPATADAGAPGGDAATGSALPLAGMTVVVTGAMSGA 641

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L+K+ R++  E + + G   S+ +SR+T +++ G+  GSK  KA+ LGV+I   E+F  L
Sbjct: 642 LEKLSRNQMNELIERAGGKSSSSVSRRTTLLVAGEKAGSKRAKAEDLGVRIAVPEEFAEL 701

Query: 718 L 718
           +
Sbjct: 702 V 702


>gi|262199205|ref|YP_003270414.1| DNA ligase, NAD-dependent [Haliangium ochraceum DSM 14365]
 gi|262082552|gb|ACY18521.1| DNA ligase, NAD-dependent [Haliangium ochraceum DSM 14365]
          Length = 751

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 183/598 (30%), Positives = 295/598 (49%), Gaps = 38/598 (6%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +S + AR E   L  E+S HD  YY  ++PII D EYD L ++  AI    P        
Sbjct: 1   MSDDTARAEYLGLVDELSDHDRRYYVEAEPIISDVEYDKLLKKLRAIEEEHPAWVVEW-- 58

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFT 129
             P  ++G     S  KV   +P LSL+  ++  +L  F  R+ R      D   ++ + 
Sbjct: 59  -SPTQRVGHSPISSFPKVVREVPMLSLDNTYDESELADFHQRVLRGLGLSGDEAGAVNYV 117

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +EPKIDG  + + YE+G F     RGDG  GED+S  +R +  +P  L   +   + VRG
Sbjct: 118 VEPKIDGIGVELSYERGAFRLGTTRGDGRVGEDISQNLRTLRGLPLRLREEV--DLIVRG 175

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249
           E ++++ DF ALN+     G +P+ NPRN  +G L++L+P  +       +       E 
Sbjct: 176 EAFMTRADFTALNEARAEAGEEPFKNPRNTVAGSLKQLDPRLVAERPMQVILYEVVGGER 235

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           FA+  +E+L ++R LG P +    +A+++  +          R+ LP+D+DGLV KV+ F
Sbjct: 236 FAREHFEVLARLRELGLPTSEHNSRADSWAALKREVAAWAERRAELPFDVDGLVIKVNSF 295

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             +  LG  ++ PRW I++KF  +Q +T + D+++ +GRTG +TPVA L PV + G  + 
Sbjct: 296 DQRDALGTTSKFPRWAIAYKFPAQQVTTVIEDLEVNVGRTGAVTPVAMLTPVEVSGTTVQ 355

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A+LHN D I+ L            I   DRVL+++AGE+IP+V+ ++        Q F 
Sbjct: 356 RASLHNWDQIERL-----------GIGPKDRVLLEKAGEIIPQVIAVVER---ASEQVFP 401

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            PS CP C   ++++          A  C   LAC  Q L  L+ F  R   NI+GLG++
Sbjct: 402 RPSTCPSCGHGLIQEPG------RVALLCPNRLACPRQLLASLEFFAGRGQMNIDGLGEK 455

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI- 548
                  +      +   AD+F L +    +      +  FG+ S  NL D+I + R+  
Sbjct: 456 VAQALLDT----GLVSNVADLFALSKEDLLT------LERFGEQSAQNLVDAIARARDSA 505

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +  R + +LG+ H+G   AR++A +Y         +++         L +      G+
Sbjct: 506 TFSRLLAALGVAHIGGVAARAIAAHYPDMDALLALVDSTAPSAEAAALEVTAEDGAGE 563



 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 5/125 (4%)

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFT 655
           L  +  VG I+A ++  F ++P     +  LL+E  V+P     E      +  K+LV T
Sbjct: 627 LGEIEGVGRIMASSLESFLRDPEAREVL-RLLRERGVNPREPATEVTGEGVLSGKRLVIT 685

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQF 714
           GTL +  R   ++ +   G  V+  +S++T  ++ G + GS KL  A++ GV +++E   
Sbjct: 686 GTLSR-PRSDIKKAIEAAGGKVTGSVSKQTAYLVAGADTGSAKLASAEKYGVPVIDEAAL 744

Query: 715 LFLLQ 719
             LL 
Sbjct: 745 DALLA 749


>gi|256377071|ref|YP_003100731.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827]
 gi|255921374|gb|ACU36885.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827]
          Length = 674

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 198/720 (27%), Positives = 326/720 (45%), Gaps = 77/720 (10%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-GPL 75
           A + +  L   +    D YY+   P++ D+EYDA +    ++  A P+L     P+  PL
Sbjct: 11  AEERIRDLADRVVSLRDAYYR-GSPLVADAEYDATEDELRSLIAANPEL----TPDPNPL 65

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
           +++G    L    V H+ P LSLEK    E +  F+ R                + PK+D
Sbjct: 66  DQVGAPAVLH-APVRHARPMLSLEKATQPEQVAAFLDR---------FPGQPVVVMPKLD 115

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++ YE G  + A  RGDG +G+DV+  +RA+           P  +EVRGE  + +
Sbjct: 116 GLSLSLVYEGGALLRAVTRGDGTTGDDVTPLVRALADGVPTRV-PAPGRVEVRGEAVMLR 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQ 254
           + F A N+       KP  NPRNAA+G LR  +P     R L F    L   +E  A   
Sbjct: 175 STFTAYNEA---HPDKPLINPRNAAAGTLRAKDPATVAGRRLRFLAFELDTDAEAGAGVG 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            ++ + +R LGF     +R A            +++ R+ L YD+DG V ++ +      
Sbjct: 232 ADLEEGLRALGF-TPADMRHAADAEAAQRVITGIETGRADLDYDLDGAVLRLADRRAYAA 290

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
            G R+ SPR  ++ KFA ++ +T L+D+   +G+TG + PVA LEPV +GG  +T ATL 
Sbjct: 291 AGTRSNSPRGALAFKFAAEEKTTLLVDVVWDVGKTGKVVPVAHLEPVFVGGTTVTRATLA 350

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI-IVNERHPDAQPFSFPSF 433
           N++ IK            R + VGD VLV+RAG+VIP V  +    +R  + +    PS 
Sbjct: 351 NQEVIK-----------ARGVMVGDTVLVRRAGDVIPFVAGVLDAAKRTGEEREIVPPST 399

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C   +    N +             ++C+AQ + RL H+ SR A +I+ +G   ++ 
Sbjct: 400 CPSCDQPLTEQGNSRE-------LFCTNVSCAAQTVRRLIHWASRAAADIDAIGPVWIER 452

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F +    A  +  P+D + L + Q      +      G+ S T + +SI   R + L R 
Sbjct: 453 FAE----AGLLEHPSDFYLLTKEQ------LLEFERVGETSATRMIESIAASRAVGLRRA 502

Query: 554 IFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           +    +       A  L +  + S +  A                L+ V  +G  +A ++
Sbjct: 503 LIGFAVPMASEGTATRLCRAGFGSLEEVADAGE----------ERLVEVEDIGPKVAASL 552

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTL------QKI 661
            E     R    +  L +       R E         + +  K +V TG +      +K+
Sbjct: 553 TEHLA--RLRPELTRLRQRGVSLDVRDEDLPPVVASDAPLAGKTVVITGAISDPRSGEKV 610

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQ-FLFLLQ 719
            R   Q    + GA  ++ +S  TD++I G   G+ K  KA++LGV ++++ + +  L+ 
Sbjct: 611 ARPAFQRLCEKAGATTASSVSANTDMLITGAEVGAGKTAKAEKLGVAVVDQGEIWAQLIA 670


>gi|295135415|ref|YP_003586091.1| DNA ligase [Zunongwangia profunda SM-A87]
 gi|294983430|gb|ADF53895.1| DNA ligase [Zunongwangia profunda SM-A87]
          Length = 812

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 170/592 (28%), Positives = 281/592 (47%), Gaps = 47/592 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
               ++ +L +E+ +H+  YY    P I D ++D   +    +    P+     DPN P 
Sbjct: 2   DIENKIYTLREELQHHNYQYYVLDNPEISDYDFDMKLKELQELEEKHPEF---NDPNSPT 58

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            ++GG +  +   V H     SL   ++ E+L+ + TRI +      D  I +T E K D
Sbjct: 59  QRVGGAVTKNFTTVVHDYRMYSLSNSYSKEELQDWETRIRKLV----DGDIKYTCELKYD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +++ Y+KG+ V A  RGDG  G+DV+  ++ I ++P  L  + PE   +RGE+ +  
Sbjct: 115 GASMSLMYDKGQLVQAVTRGDGFQGDDVTNNVKTIRSVPLKLRGDYPEKFHIRGEIVLPF 174

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
             F  LN E +  G +PYANPRN ASG L+  +  ++ +     +        +    Q+
Sbjct: 175 EGFAKLNAERVENGEEPYANPRNTASGSLKLQDSAEVAKRPLDCLLYNIAGENLPISSQF 234

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           E L+K R  GF V       N    ++SY N     R  LPY+ DG+V KV++F  Q++L
Sbjct: 235 ESLEKARDWGFKVPAESELKNNIEEVLSYINYWDIHRHDLPYETDGVVVKVNDFGQQEEL 294

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G  A+SPRW +++KF  +Q +T+L  I  Q+GRTG +TPVA LEPV + G ++  A+LHN
Sbjct: 295 GYTAKSPRWAMAYKFKAEQETTKLHKITYQVGRTGAITPVANLEPVQLAGTIVKRASLHN 354

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D I  L           DIR GD+V V++ GE+IPK+V +   +R PD++P ++  +CP
Sbjct: 355 ADQIAKL-----------DIREGDKVFVEKGGEIIPKIVGVDFKQRDPDSEPTTYAIYCP 403

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            C + + R          A H C   + C  Q + R++HFVSR A +I+GLGK  ++  +
Sbjct: 404 ECGTELQRKEGE------AQHFCPNYVGCPPQIIGRMEHFVSRKAMDIDGLGKGTIEILY 457

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
            +      I   +D + L         +  +    G      L   + +        +  
Sbjct: 458 YN----GIINNYSDFYYLTYDDIIGQERWLDNEEAGIKKSGELQVKLGQA------IYAL 507

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           S G   +    +  +    +  +                  ++  +  + + 
Sbjct: 508 SQGWGSITRADSEKIGNEIVYLEEIFSL-------------NIAEISGIDEK 546



 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 65/412 (15%), Positives = 156/412 (37%), Gaps = 26/412 (6%)

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
           +   P ++        Q   R+     +            +E +   G +   +  +   
Sbjct: 417 QHFCPNYVGC----PPQIIGRMEHFVSRKAMDIDGLGKGTIEILYYNGIINNYSDFYYLT 472

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA----QPFSFPSF 433
           Y   +     +      I+    + V + G+ I  +     +    D+        +   
Sbjct: 473 YDDIIGQERWLDNEEAGIKKSGELQV-KLGQAIYALSQGWGSITRADSEKIGNEIVYLEE 531

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS-----RDAFNIEGLGK 488
                   +  ++ K  K       T     +      ++  VS        F      +
Sbjct: 532 IFSLNIAEISGIDEKKFKRFLMELNTAIQRVAISDYTSMEDCVSVNLLIDLKFPDHQENQ 591

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
              +    ++     +R  +     +     +     + +     +  N+ +S+ + +  
Sbjct: 592 PAKEALKNADYIDELLRNESFQHYPKFDDFITKISDRSRISIQKKTTENILNSVEESKKR 651

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           + ++ +F+LGIR VG   AR +A+++ +                 +   LI++  VG+ +
Sbjct: 652 TFDKVLFALGIRDVGEVSARKIAEHFGNIDKLMAA----------NTEELIQLRDVGERV 701

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A +I+EF+ +  NI  V+ L ++        ++  S+++E    V +GT   I R + ++
Sbjct: 702 AASIIEFFTDEENIDIVKRLREKDLQFEMEEKETSSNKLEGLSFVVSGTFS-ISRSELKK 760

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ + G    + LS+ T+ +IVG+  G SK  KA++ G+ +++EE+F  +++
Sbjct: 761 HIEENGGKNLSSLSKSTNYLIVGEKMGPSKKVKAEKEGIAMISEEEFFKMIE 812


>gi|332755049|gb|EGJ85414.1| DNA ligase, NAD-dependent [Shigella flexneri 4343-70]
          Length = 421

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 162/456 (35%), Positives = 261/456 (57%), Gaps = 40/456 (8%)

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
            PV++ V    +   ++++Y++++  R TL +DIDG+V KV+    Q+QLG  AR+PRW 
Sbjct: 1   MPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARAPRWA 60

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV++ G L++NATLHN D I+ L   
Sbjct: 61  VAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERL--- 117

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                    +R+GD+V+++RAG+VIP+VV+++++ER  D +   FP+ CP+C S V R  
Sbjct: 118 --------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVE 169

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
                   A  RCTGGL C AQ+ E LKHFVSR A +++G+G + +D   + E     + 
Sbjct: 170 GE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKE----YVH 219

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
            PAD+F L         K+  +   G     N+ +++ K +  +  RF+++LGIR VG  
Sbjct: 220 TPADLFKLTA------GKLTGLERMGPKLAQNVVNALEKAKETTFARFLYALGIREVGEA 273

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A  LA Y+ + +                   L +VP VG ++A  +  F+    N   +
Sbjct: 274 TAAGLAAYFGTLEALEAA----------SIEELQKVPDVGIVVASHVHNFFAEESNRNVI 323

Query: 626 EALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             LL E       I  + + + S    K +V TG+L ++ R  A+  + +LGA V+  +S
Sbjct: 324 SELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVS 383

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +KTD++I G+  GSKL KAQ+LG+++++E + L LL
Sbjct: 384 KKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 419


>gi|303237245|ref|ZP_07323815.1| NAD-dependent DNA ligase domain protein [Prevotella disiens
           FB035-09AN]
 gi|302482632|gb|EFL45657.1| NAD-dependent DNA ligase domain protein [Prevotella disiens
           FB035-09AN]
          Length = 655

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 160/701 (22%), Positives = 282/701 (40%), Gaps = 62/701 (8%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L  +++   + YY     I+ D E+DA       +         +  P+ P   +  
Sbjct: 9   MRELVDKLNEASNTYYNGQNEIMSDHEWDAAFDELKHLEEE----TGTILPDSPTANVSA 64

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           +      K  H    LSL K     DL K+                   +  K+DG  + 
Sbjct: 65  DSIAG-EKEEHEFAALSLAKTKKTTDLLKWAE------------EKPIWISWKLDGLTLV 111

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y+KGK      RG+GH G +++    AI  I    ++     + +RGE  IS +DF  
Sbjct: 112 VTYDKGKLSKVVTRGNGHIGTNITHLAPAIAGIL--PTITDKGHVVIRGEAIISYSDFNV 169

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
            N        + YANPRN ASG L   N      R+L++    L  + E F     +M  
Sbjct: 170 FN----METGEEYANPRNLASGSLTLKNIETLKERHLHWIPFTLVYSDEPFNSWGAQMDY 225

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
             +     V +          I +         ++  Y +DGLV   D+ +         
Sbjct: 226 LTKLGFKTVEHEAINVPNIENIDATIENWTHKLNSFDYPVDGLVICFDDIAYATTGSVTG 285

Query: 320 RS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
               R   + K+ ++ A T L  I+     +  ++PVA  +PV + G  +  A+L N   
Sbjct: 286 HHATRGGYAFKWQDESAETELEYIEWSCAAST-ISPVAVFKPVELEGTTVKRASLCNISE 344

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
            + L   GK          G ++ V +A ++IPKV++++           S P+ CP+C+
Sbjct: 345 CERLGIGGK----------GTKISVIKANKIIPKVIEVLQT-----EGKLSIPTECPVCK 389

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S    ++   +        CT     + +  + ++   S++  NI+GL +Q L  F    
Sbjct: 390 SPT--EVVVSSSSETKTLHCTNPNCAAKELKKFVRFV-SKEGVNIDGLSEQTLQKFIN-- 444

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                I   ADIF L          ++ + GFGD SV NL  +I+K + +  +  +FSL 
Sbjct: 445 --LGWINQYADIFHLHEH----ANDLKIMEGFGDKSVLNLLRAIDKAKIVEAKNLLFSLS 498

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  VG ++   L   Y   +   +           D      +  +G   + + + + Q 
Sbjct: 499 IPLVGQDVCSRLLSAYPFNELIMKARLAT------DSAEFSNIAGIGPEKSASFIAWIQA 552

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVV 677
             NI  +  LL E+  +    ++ + +       V TG +   + R + + Y+   G  V
Sbjct: 553 EENIKRLNNLLVELKITQPVVKE-IGTRCNGLTFVVTGDVHHYKNRSELKAYIESQGGKV 611

Query: 678 SAILSRKTDIIIVGD-NPGS-KLEKAQQLGVKIMNEEQFLF 716
           +  +S+ T+ +I  D N  S K +KA+Q  + I++E++F+ 
Sbjct: 612 TGSVSKSTNYLINNDVNSTSEKNKKARQFEIPIISEDEFVE 652


>gi|67809897|gb|AAY81980.1| NAD-dependent DNA ligase [Wolbachia pipientis]
          Length = 552

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 222/590 (37%), Positives = 323/590 (54%), Gaps = 41/590 (6%)

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +G   +    KV H  P LSLE  ++ + + KF+++I RF  +   + I    EPKIDG 
Sbjct: 1   VGAPPDERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLIE---DKIEILCEPKIDGL 57

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
             +  YE G+FV AA RGDG  GEDV+  +  I   P+ L       +EVRGE+YIS +D
Sbjct: 58  SFSAIYEDGRFVKAATRGDGFVGEDVTHNVATIKGFPKFLQGV-QGRLEVRGEIYISNSD 116

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           FL LN+         +ANPRNAA+G L++L+            +          K Q E+
Sbjct: 117 FLKLNEN------DEFANPRNAAAGSLKQLDANITASRP--LRYFAYSLIGGAEKSQSEV 168

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K+  LGF VN      ++  G++ +Y +         YDIDG+VYKV++  LQ +LG 
Sbjct: 169 LNKLEALGFCVNEHQSLTSSLDGMLKFYTKSILSLYL-DYDIDGIVYKVNDLVLQNRLGN 227

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PR  +++KF+   A T+L  I IQ+GRTG+LTPVA L PVNIGG L++ A+LHN+D
Sbjct: 228 THKAPRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQD 287

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            IK            +DIR GD V +KRAG+VIP++V++  + R P+   F FP  CP C
Sbjct: 288 EIKR-----------KDIREGDIVTIKRAGDVIPQIVEVSRDSRLPNTPEFVFPEVCPEC 336

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S+V +          AA RC    AC AQ +E+LKHFVS+DAF+I GLG +Q++FF+  
Sbjct: 337 GSKVRQVEGE------AAVRCPEEFACKAQIIEKLKHFVSKDAFDIVGLGDKQIEFFYD- 389

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I+   DIFTL+ R       +E   G+G  S+ +L ++I  RR I+L+RFIFSL
Sbjct: 390 ---LGLIKQIPDIFTLEERL--DEFNLEEQSGWGKKSIAHLLNAIQSRRVITLDRFIFSL 444

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GIR +G   A  LA YY+SY N+   +  +    + D   L+ +  +G  +A+++  F+ 
Sbjct: 445 GIRFIGQVAAELLADYYVSYDNWYNSMIEL----SSDNTELVGIDGIGKKVAESLESFFS 500

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
              NI  +  L   +         + S     K +VFTG L  + R +A+
Sbjct: 501 KEHNIKMLNDLTACLQILPVSSNSSNSVLNN-KIIVFTGKLLAMSRGEAK 549


>gi|291448912|ref|ZP_06588302.1| DNA ligase [Streptomyces roseosporus NRRL 15998]
 gi|291351859|gb|EFE78763.1| DNA ligase [Streptomyces roseosporus NRRL 15998]
          Length = 710

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 196/720 (27%), Positives = 312/720 (43%), Gaps = 93/720 (12%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
            +  + D  YD L R   A     P+   +     P  K+ G   +    V H++P LSL
Sbjct: 34  GESGLDDDAYDRLARGIAAYEADHPEEVLAA---SPTGKVAGGAAVG--DVPHTVPMLSL 88

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E    +   + R   +       +++EPK+DG  +  RY  G+F     RGDG 
Sbjct: 89  DNVFSAEQFATWTASLERRIGRPV---TAWSVEPKLDGLAVAARYRDGRFERLITRGDGT 145

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDVS    A+  +P  L+  +   IEVRGE+ ++ + F   N      G  P+ANPRN
Sbjct: 146 AGEDVSHAAGAVVGLPERLAEPV--TIEVRGEILMTNDQFDQGNAIRTEHGGAPFANPRN 203

Query: 219 AASGILRRLNPTDITRYLNFFVHGLGKTS------EIFAKGQYEMLQKMRCLGFPVNNGV 272
            A+G LR  +         F    L           +      E+L  +  LG     G 
Sbjct: 204 GAAGTLRAKDRAYRVETTFFAYGALPLPDSGELGETLAELPHSEILSYVAGLGVHTAAGT 263

Query: 273 RQAN----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
             A     T   + +  + +  +R+ LP+ IDG+V K D  + Q++ G   R+PRW I++
Sbjct: 264 DVAPVLAATVEEVQARVDAIGPLRAALPFGIDGIVIKADLAADQREAGSGTRAPRWAIAY 323

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           K    +  TRL+ ++  +GRTGI+ P A LEPV I G+ +  ATLHN   I         
Sbjct: 324 KLPAVEKITRLVSVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADITR------- 376

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
               RD+R+GD+V+V +AG++IP++   +V+ R  D  P  FP  CP C S +       
Sbjct: 377 ----RDLRLGDQVMVYKAGDIIPRIEAPVVHLRTGDETPIDFPESCPQCGSAIDTSEQ-- 430

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508
                   RCT G  C  + +  + +   RD  +IEGLG  ++         A  +   A
Sbjct: 431 ------RWRCTRGRNC--RLVASVSYAAGRDQLDIEGLGATRVVQLVD----AGLVADFA 478

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           D+FTL+R Q         +   G+ S  NL  +I   R   L R   +LG+R  G  ++R
Sbjct: 479 DLFTLEREQL------LALDRMGETSTDNLLAAIETARTRPLSRVFCALGVRGTGRSMSR 532

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            +A+Y+ +                 D  +L RV  +G   A A+V   +       +  L
Sbjct: 533 RIARYFATMDRIVAA----------DVETLQRVDGIGKEKAAAVVA--ELAELAPLIAKL 580

Query: 629 LKEVSPSIGRHEKNVSS--------------------------EIENKKLVFTGT----L 658
           +                                           +    +V TG     L
Sbjct: 581 VAAGVNMTEPGATPPPEPGTEEEAAAAGADAEAGGEGGTGPTLPLAGMTVVVTGAMTGAL 640

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +K+ R++  E + + G   S+ +S++T +++ GD  GSK  KA+ LGV+I   E+F  L+
Sbjct: 641 EKLSRNQMNELIERAGGKSSSSVSKRTSLLVAGDKAGSKRTKAEDLGVRIAVPEEFAELV 700


>gi|239945456|ref|ZP_04697393.1| putative NAD-dependent DNA ligase [Streptomyces roseosporus NRRL
           15998]
 gi|239991920|ref|ZP_04712584.1| putative NAD-dependent DNA ligase [Streptomyces roseosporus NRRL
           11379]
          Length = 702

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 196/720 (27%), Positives = 312/720 (43%), Gaps = 93/720 (12%)

Query: 39  SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
            +  + D  YD L R   A     P+   +     P  K+ G   +    V H++P LSL
Sbjct: 26  GESGLDDDAYDRLARGIAAYEADHPEEVLAA---SPTGKVAGGAAVG--DVPHTVPMLSL 80

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           + +++ E    +   + R   +       +++EPK+DG  +  RY  G+F     RGDG 
Sbjct: 81  DNVFSAEQFATWTASLERRIGRPV---TAWSVEPKLDGLAVAARYRDGRFERLITRGDGT 137

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
           +GEDVS    A+  +P  L+  +   IEVRGE+ ++ + F   N      G  P+ANPRN
Sbjct: 138 AGEDVSHAAGAVVGLPERLAEPV--TIEVRGEILMTNDQFDQGNAIRTEHGGAPFANPRN 195

Query: 219 AASGILRRLNPTDITRYLNFFVHGLGKTS------EIFAKGQYEMLQKMRCLGFPVNNGV 272
            A+G LR  +         F    L           +      E+L  +  LG     G 
Sbjct: 196 GAAGTLRAKDRAYRVETTFFAYGALPLPDSGELGETLAELPHSEILSYVAGLGVHTAAGT 255

Query: 273 RQAN----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
             A     T   + +  + +  +R+ LP+ IDG+V K D  + Q++ G   R+PRW I++
Sbjct: 256 DVAPVLAATVEEVQARVDAIGPLRAALPFGIDGIVIKADLAADQREAGSGTRAPRWAIAY 315

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           K    +  TRL+ ++  +GRTGI+ P A LEPV I G+ +  ATLHN   I         
Sbjct: 316 KLPAVEKITRLVSVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADITR------- 368

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
               RD+R+GD+V+V +AG++IP++   +V+ R  D  P  FP  CP C S +       
Sbjct: 369 ----RDLRLGDQVMVYKAGDIIPRIEAPVVHLRTGDETPIDFPESCPQCGSAIDTSEQ-- 422

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508
                   RCT G  C  + +  + +   RD  +IEGLG  ++         A  +   A
Sbjct: 423 ------RWRCTRGRNC--RLVASVSYAAGRDQLDIEGLGATRVVQLVD----AGLVADFA 470

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
           D+FTL+R Q         +   G+ S  NL  +I   R   L R   +LG+R  G  ++R
Sbjct: 471 DLFTLEREQL------LALDRMGETSTDNLLAAIETARTRPLSRVFCALGVRGTGRSMSR 524

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
            +A+Y+ +                 D  +L RV  +G   A A+V   +       +  L
Sbjct: 525 RIARYFATMDRIVAA----------DVETLQRVDGIGKEKAAAVVA--ELAELAPLIAKL 572

Query: 629 LKEVSPSIGRHEKNVSS--------------------------EIENKKLVFTGT----L 658
           +                                           +    +V TG     L
Sbjct: 573 VAAGVNMTEPGATPPPEPGTEEEAAAAGADAEAGGEGGTGPTLPLAGMTVVVTGAMTGAL 632

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +K+ R++  E + + G   S+ +S++T +++ GD  GSK  KA+ LGV+I   E+F  L+
Sbjct: 633 EKLSRNQMNELIERAGGKSSSSVSKRTSLLVAGDKAGSKRTKAEDLGVRIAVPEEFAELV 692


>gi|13235527|emb|CAC33654.1| DNA ligase [Rickettsia montanensis]
          Length = 488

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 196/508 (38%), Positives = 310/508 (61%), Gaps = 23/508 (4%)

Query: 213 YANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+ +    R L +FV+  G T +  A  Q ++L K++  GF +N  
Sbjct: 1   FANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTEQNLASSQDQLLTKLKECGFNINEI 60

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
            + A++   I ++Y  +K+ R  LPY+IDG+VYK+++F+LQ ++G  ARSPR+  +HKF 
Sbjct: 61  SKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLNDFALQNRMGFIARSPRFATAHKFP 120

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
                T+LL I +Q+GRTG LTPVA LEP+ IGG  ++ ATLHN   I            
Sbjct: 121 AIIGRTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSRATLHNFQEIAR---------- 170

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +D+R+ D V ++RAG+VIPK++ +  ++R  D   F  P FC  C S++          
Sbjct: 171 -KDVRIKDYVFLQRAGDVIPKIMGVDFDKRPSDTATFDTPLFCLSCNSKLHYMPE----- 224

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
                RC  GL C AQ  ER++HFVS++A +IEGLG++Q++F   +      I  P DIF
Sbjct: 225 -DIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQIEFLIDN----GLISNPLDIF 279

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L+ +  +S  K+EN+ G+G  SV NL+ +I K +N+SL RFI++LGIR +G + A+ LA
Sbjct: 280 FLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKNVSLPRFIYALGIRRIGEQNAKLLA 339

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           K + SY NF  ++  +  +  D +  L  +  +GD I   I++F+    NI  ++ L   
Sbjct: 340 KEFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDKILVDIIDFFDVKENIELIKKLGAI 399

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++    +  +  SS + +K +VFTG+L  I R +A+    +LGA V+A +S  TD+++ G
Sbjct: 400 LNIEDYKETREQSS-LTDKIVVFTGSLPTISRAEAKATAEKLGAKVAAGVSSNTDLVVAG 458

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + GSKL+KA++L +KI++EE++L L++
Sbjct: 459 VDAGSKLKKAKELNIKIIDEEEWLTLIK 486


>gi|253797891|ref|YP_003030892.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 1435]
 gi|253319394|gb|ACT23997.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 1435]
          Length = 474

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 144/494 (29%), Positives = 233/494 (47%), Gaps = 30/494 (6%)

Query: 231 DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290
              R L    HGLG          ++    +R  G PV+     A    G+    +    
Sbjct: 9   TARRRLRMICHGLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGE 68

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
            R  + ++IDG+V KVDE +LQ++LG  +R+PRW I++K+  ++A T+LLDI + +GRTG
Sbjct: 69  HRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTG 128

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TP A + PV + G+ +  ATLHN   IK            + + +GD V++++AG+VI
Sbjct: 129 RITPFAFMTPVKVAGSTVGQATLHNASEIKR-----------KGVLIGDTVVIRKAGDVI 177

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           P+V+  +V  R    + F  P+ CP C S +  +      +  A  RC     C  Q  E
Sbjct: 178 PEVLGPVVELRDGSEREFIMPTTCPECGSPLAPE-----KEGDADIRCPNARGCPGQLRE 232

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
           R+ H  SR+  +IE LG +      +++     I    ++F L  R    T       G 
Sbjct: 233 RVFHVASRNGLDIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGE 288

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
              +   L  +++K +   L R + +L IRHVG   AR+LA  + S    A         
Sbjct: 289 LSANGKRLLVNLDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAA------- 341

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
                  L  V  VG  IA A+ E++    +   V+         +   +++V   +   
Sbjct: 342 ---STDQLAAVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGL 398

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            +V TG+L    R  A+E +   G   +  +S+KT+ ++ GD+PGSK +KA +LGV I++
Sbjct: 399 TIVVTGSLTGFSRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILD 458

Query: 711 EEQFLFLLQQYNTT 724
           E+ F  LL     +
Sbjct: 459 EDGFRRLLADGPAS 472


>gi|227494609|ref|ZP_03924925.1| DNA ligase (NAD(+)) [Actinomyces coleocanis DSM 15436]
 gi|226832343|gb|EEH64726.1| DNA ligase (NAD(+)) [Actinomyces coleocanis DSM 15436]
          Length = 806

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 154/505 (30%), Positives = 248/505 (49%), Gaps = 25/505 (4%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
             +  P++     +A  +   L  EI+     YY    P   D+EYD L      +   +
Sbjct: 19  STEKTPVDTPVPAEATAKWRDLVTEINQMRFDYYNLDAPTASDAEYDVLFEELKDLEAKW 78

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P L     P+ P   +GG    +   V H IP LSL+ ++++E   +++ R         
Sbjct: 79  PMLV---TPDSPTQTVGGSAVNTFAPVAHRIPMLSLDDVFSVEATHQWLDRCLTGLGM-- 133

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
            N +    E K+DG  ++I YE G    AA RGDG  GEDV+A +  I  +PR L+ + P
Sbjct: 134 -NQVEILAEVKVDGLAVSILYENGLLTRAATRGDGRVGEDVTANVLTISNVPRQLTGDFP 192

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFF 239
             +EVRGE+Y    DFL  N++    G K + N RNAA+G LR+ +P +  +    +   
Sbjct: 193 ASVEVRGEIYFPIADFLDFNEQRALRGEKTFVNARNAAAGSLRQKDPAETAKRPLAMVCH 252

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
             G+ +  +     Q+   ++++  G PV+   R  +T   I          R+ L ++I
Sbjct: 253 GIGIYEGGQSQPDSQHAWYEQLKAWGLPVSEYTRLISTHAEIDEVIEYFGKHRADLSHEI 312

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V+KVD    Q  LG  +R+PRW  ++KF   +  TRLLDI  Q+GRTG +TP   +E
Sbjct: 313 DGMVFKVDSRQYQAALGTTSRAPRWAAAYKFPPTEVHTRLLDIRTQVGRTGRVTPYGVME 372

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
            V + G+ +++ATLHN+D +K            + + +GD V++++AG+VIP+++  + +
Sbjct: 373 KVLVAGSHVSSATLHNQDEVKR-----------KGVLIGDMVILRKAGDVIPEILGPVES 421

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R    + F  PS CP C + +         +     RC    +C AQ  +R+     R 
Sbjct: 422 LRDGSERAFVMPSHCPSCGAPLA-----PAKEGDVDLRCPNQASCPAQITQRISFMGGRS 476

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSI 504
           AF+IEGLG +      + E   F +
Sbjct: 477 AFDIEGLGDESALALTQPEVNRFEV 501



 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 11/216 (5%)

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           R     ++  RR ++               +T + D + K +   L R + +L IRHVG 
Sbjct: 595 RQIRAFWSTGRRLKSGEWAKGQEPK-PTQDLTKMLDQLEKAKQQPLWRVLNALSIRHVGP 653

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             +++LA ++ S     Q               L  V  VG IIA+A+V ++Q   +   
Sbjct: 654 TASQALADHFRSLDALQQA----------SVAELAAVEGVGQIIAEAVVAWFQVDWHKHI 703

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
           V               + +   +    +V +GT+    R  A+  +   GA  S+ +S+K
Sbjct: 704 VNTWAASGVRMEDEATEELPQTLAGLTIVVSGTMPGYDRESAKAAIIARGAKASSSVSKK 763

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           T +++ G   GSK  KA+ LGV +++E +F  LL +
Sbjct: 764 TSLVVAGPGAGSKATKAETLGVPLVDETKFQLLLDE 799


>gi|13235515|emb|CAC33719.1| DNA ligase [Rickettsia rickettsii]
          Length = 488

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 194/508 (38%), Positives = 311/508 (61%), Gaps = 23/508 (4%)

Query: 213 YANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G LR+L+ +    R L +FV+  G T +  A  Q ++L K++  GF +N  
Sbjct: 1   FANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTEQNLASSQDQLLTKLKECGFNINEI 60

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
            + A++   I ++Y  +K+ R  LPY+IDG+VYK+++F+LQ ++G  AR+PR+  +HKF 
Sbjct: 61  SKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLNDFALQNRMGFIARNPRFATAHKFP 120

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
                T+LL I +Q+GRTG LTPVA LEP+ IGG  ++ ATLHN   I            
Sbjct: 121 AIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSRATLHNFQEIAR---------- 170

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +D+R+ D V ++RAG+VIPK++ +  ++R  D + F  P FC  C S++          
Sbjct: 171 -KDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTETFDTPLFCLSCNSKLHY------TP 223

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
                RC  GL C AQ  ER++HFVS++A +IEGLG++Q++F          I  P DIF
Sbjct: 224 EDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLIDK----GLISNPLDIF 279

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L+ +  +S  K+EN+ G+G  SV NL+ +I K +N+SL RFI++LGIRH+G + A+ LA
Sbjct: 280 FLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKNVSLPRFIYALGIRHIGEQNAKLLA 339

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           + + SY NF  ++  +  +  D +  L  +  +GD I   I++F+    NI  ++ L + 
Sbjct: 340 REFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDKILVDIIDFFDVKENIELIKKLGEI 399

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++    +  +  SS + +K +VFTG+L  I R +A+    +LGA V+  +S  TD+++ G
Sbjct: 400 LNIEDYKETREQSS-LTDKIVVFTGSLPTISRAEAKATAEKLGAKVAVGVSSNTDLVVAG 458

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            + GSKL+KA++L +KI++EE++L L++
Sbjct: 459 VDAGSKLKKAKELNIKIIDEEEWLTLIK 486


>gi|328869954|gb|EGG18329.1| BRCT domain-containing protein [Dictyostelium fasciculatum]
          Length = 842

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 187/812 (23%), Positives = 329/812 (40%), Gaps = 140/812 (17%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S  Q   ++ +L  +I+ ++D YY  S+ +I D EYD L ++ + +   +          
Sbjct: 67  SRNQLVDDIKTLRNDINKYNDLYYNKSETVISDFEYDMLFKKLETLEQLYESQYSGSTDL 126

Query: 73  G--------PLNKIGGEMNLS----LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
                    P+N++G  +  +      KV H +  LSL+  ++ EDL  F +R+     K
Sbjct: 127 SASGSGSTTPINQVGAPIATAGNERGEKVKHIVRMLSLDNTYSKEDLMAFESRVLGNLSK 186

Query: 121 KDDN--------SIFFTLEPKIDGTMITIRYEK-GKFVYAALRGDGHSGEDVSACIRAIP 171
                       ++ F+ E K DG  ++I Y+  GK    A RGDG  GE ++       
Sbjct: 187 SSSGISNNNNNNNLEFSCELKYDGIGLSIVYDSFGKLERIATRGDGDIGEIITTNALYYI 246

Query: 172 TIPRVLSLN-------------IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
                                   + IEVRGEV   K+    LN          Y N RN
Sbjct: 247 PSLPKQISTSHLVNNNNNLTLGQNDKIEVRGEVVFKKSQLEKLNTWRSMNDEVEYKNTRN 306

Query: 219 AASGILRRLNPTDITR-------YLNFFVHGL----------------GKTSEIFAKGQY 255
             SG LR +                +F  + L                   +        
Sbjct: 307 IVSGKLRSILDPKQEELDNPFGIEFDFISYQLFIHQNQNNQINNNQNNNNQNNNNTNTHN 366

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS------TLPYDIDGLVYKVDEF 309
             +  +  +GF ++       +     S   E            +  +DIDG+V KV+  
Sbjct: 367 NNIILLEKIGFNIDRNAILVGSLSQRDSSRLEEFIKMWSGEKRESFDWDIDGIVVKVNSL 426

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
             Q  LG+  RSPRW +++KF  +   T +  I +QIGR+G +TPVA +EPV+I G  ++
Sbjct: 427 EKQAILGQANRSPRWAVAYKFGARSMPTVVKSIQLQIGRSGKVTPVAEVEPVDIHGVTVS 486

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI------------- 416
            ATL+N  +I+ L            +R G RVLV+RAG+VIPK++               
Sbjct: 487 RATLNNLLFIQKL-----------GVRTGSRVLVERAGDVIPKIIQSLDAKEPMTKKELL 535

Query: 417 IVNERHPDAQPFSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
            + +R P +        CP    S + +    +               C  Q+L+ +  +
Sbjct: 536 DMFDRCPTSATDGDSLKCPCALGSPLSQPDGYQD-------YYCFESNCPNQRLQSISWY 588

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           VS+D  N+ G+G  Q+    +       I+   D+++L  ++     ++  + GF D  V
Sbjct: 589 VSKDGMNMTGIGPSQIKVLLEY----GLIQDIGDLYSLADKKD----QLLKLRGFSDKKV 640

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            N+ +S+ K +  +L     +LGI  VG    + LA+ + + ++ A              
Sbjct: 641 ANMIESVEKSKKENLAHLFCALGIPGVGKASCKWLAERFTTIESLATA----------SL 690

Query: 596 LSLIRVPLVGDIIAQAIVEFYQ--NPRNICAVEALLKEV---------------SPSIGR 638
             +  V  +G  I+  I  ++   + ++   +E LL  +               + S  +
Sbjct: 691 QDIEVVGDLGPNISTNIYYYFHPTDQQSKDGIEKLLSIIQKHNVYDSQSQNRNQNRSDEK 750

Query: 639 HEKNV-----SSEIENKKLVFTGTLQKIQRHKAQEYVT-QLGAVVSAILSRKTDIIIVGD 692
              +      SS  ++K +V TG  + + R + Q+ V    G ++ + + + T+ +++G 
Sbjct: 751 KNSSTTTLQQSSIFKDKNVVVTGKFKNMTREEIQDIVQHNFGGIIQSQIRKNTNYLLMGQ 810

Query: 693 NPG-SKLEKAQQLGVKIMNEEQF---LFLLQQ 720
           + G SK+ KA+Q G  I+ E +F     L+Q+
Sbjct: 811 DAGSSKITKAEQNGTTIITENEFDDLYKLIQK 842


>gi|4235374|gb|AAD13190.1| NAD-dependent DNA ligase [Thermus thermophilus]
          Length = 557

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 191/605 (31%), Positives = 307/605 (50%), Gaps = 54/605 (8%)

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
            FP+L     P+ P  ++G     +    V H     SL+  +N ++L+ F  RI R   
Sbjct: 1   RFPELK---SPDSPTEQVGARPLEATFRPVRHPTRMYSLDNAFNFDELKAFEERIERALG 57

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
           ++      +T+E K+DG  + + YE G  VY A RGDG  GE+V+  +  IPTIPR L  
Sbjct: 58  RE--GPFAYTVEHKVDGLSVNLYYEDGVLVYGATRGDGEVGEEVTQNLLTIPTIPRRLKG 115

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YL 236
             PE +EVRGEVY+    FL LN+E+   G + + NPRNAA+G LR+ +P    +     
Sbjct: 116 V-PERLEVRGEVYMPVEAFLRLNEELEERGARIFKNPRNAAAGSLRQKDPRITAKRGLRA 174

Query: 237 NFFVHGLG--KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            F+  GLG  +        Q+ +L  ++   FPV +G  +A    G+ + Y +    R  
Sbjct: 175 TFYALGLGLEEVEREGVATQFALLHWLKEKSFPVEHGYARAVGAEGVEAVYQDWLKKRRA 234

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LP++ DG+V K+DE +L ++LG  AR+PR+ I++KF  ++  TRLLD+  Q+GRTG +TP
Sbjct: 235 LPFEADGVVVKLDELALWRELGYTARAPRFAIAYKFPAEEKETRLLDVAFQVGRTGRVTP 294

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           V  LEPV + G+ ++  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+
Sbjct: 295 VGILEPVFLEGSEVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVL 343

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
            ++   R  + +P  +P  CP C  R++++           HRC   L C A++ E ++H
Sbjct: 344 RVLKERRTGEERPIRWPETCPECGHRLLKE--------GKVHRCPNPL-CPAKRFEAIRH 394

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           F SR A +I+GLG++ ++   +       ++  AD++ L++           +   G+ S
Sbjct: 395 FPSRKAMDIQGLGEKLIERLLEK----GLVKDVADLYRLRKEDLVG------LERMGEKS 444

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             NL   I + +   LER +++LG+  VG  +AR+LA  + +     +     +    + 
Sbjct: 445 AQNLLRQIEESKRRGLERLLYALGLPGVGEVLARNLAARFGNMDRLLEASLEELLEVEEV 504

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
                         A+AI+E  ++P     V  L +       +  +     ++    V 
Sbjct: 505 GEL----------TARAILETLKDPAFRDLVRRLKEAGVEMEAK--EKGGEALKGLTFVI 552

Query: 655 TGTLQ 659
           TG L 
Sbjct: 553 TGELS 557


>gi|254994698|ref|ZP_05276888.1| DNA ligase [Anaplasma marginale str. Mississippi]
          Length = 624

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 221/605 (36%), Positives = 337/605 (55%), Gaps = 46/605 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQAR+ L+ L  ++ +HD  Y+    P + D +YD L +    +   FPD+++ +D   
Sbjct: 2   LEQARRRLAGLNAKLRHHDVLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDISQYDD--- 58

Query: 74  PLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
             + +G   ++    KV H  P LSLE  + ++D+ KFITR+ RF + + D+ +  + E 
Sbjct: 59  YADVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCEL 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG   +  Y  GK    A RG+GH GED++     +  +P  L  + PE++EVRGE+Y
Sbjct: 119 KMDGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQL-DSAPEVLEVRGEIY 177

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +   DF  L       G   +ANPRNAA+G +R+LN   +        +           
Sbjct: 178 MHHEDFEKLR------GSCNFANPRNAAAGSIRQLNQKIVEERN--LSYVAYSAVNSTFA 229

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E+L+++   GF  N  V   +     +++YN + + RS L YDIDG+VYKV+  + Q
Sbjct: 230 TQQEILKQLDEWGFHTNKQVLFTDKIEEAIAFYNSVYTTRSALGYDIDGVVYKVNSTNFQ 289

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K LG   +SPRW I+HKF   +A T+LLDI +Q+GRTG++TP+A LEP+NIGG +++ A+
Sbjct: 290 KLLGATGKSPRWAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRAS 349

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN + I+            +D+R+GD V+VKRAGEVIP+VVD+    R    Q F FPS
Sbjct: 350 LHNLNEIER-----------KDVRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFPS 398

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S++ R+          A RC   L+C AQ LER+KHFVSRD  NI GLG +Q++
Sbjct: 399 HCPSCGSKLHREPGE------VALRCVAELSCKAQALERVKHFVSRDGLNIMGLGAKQIE 452

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
           FF         I   ADIF+L+ +        E+  G+G+ SV NL  +I     + L  
Sbjct: 453 FFCNH----GLIGSIADIFSLEEKLHGINLDTEH--GWGEKSVANLIAAIRNSATVRLSN 506

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           FIF+LGIR +G   A+ +A++Y SY+N+ Q +  +   ++      I++  +G       
Sbjct: 507 FIFALGIRFIGVGAAKLIAEHYRSYKNWHQAMLALTETHDT-----IQIRGLGKK----- 556

Query: 613 VEFYQ 617
            +F++
Sbjct: 557 HKFFE 561


>gi|303252067|ref|ZP_07338236.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302649049|gb|EFL79236.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 451

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 150/411 (36%), Positives = 244/411 (59%), Gaps = 19/411 (4%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
            +L +L Q++  ++  Y+    P++ D+EYD L      +    P+   +   + P  ++
Sbjct: 16  AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G +      +VTH IP LSL+  ++ E+L  F+ R+  +  +    ++ F  EPK+DG  
Sbjct: 73  GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197
           ++I Y  G    AA RGDG +GED+++ IR I  IP ++   N P  +EVRGEV++ +  
Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 191

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL---NFFVHGLGKTSEIFAKGQ 254
           F ALN+  +  G K +ANPRNAA+G LR+L+P    +     N +  G+ ++ +      
Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATH 251

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           +E LQ ++ +G PVNN +R A     ++++Y ++++ R TL YDIDG V KV++  LQ+Q
Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +RSPRW I++KF  ++  T L D++ Q+GRTG +TPVA+LEPV + G  ++NATLH
Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
           N D I+ L            I +GD V+++RAG+VIP++V +++  R  +A
Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENA 411


>gi|115379272|ref|ZP_01466385.1| DNA ligase [Stigmatella aurantiaca DW4/3-1]
 gi|115363713|gb|EAU62835.1| DNA ligase [Stigmatella aurantiaca DW4/3-1]
          Length = 443

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 156/426 (36%), Positives = 245/426 (57%), Gaps = 27/426 (6%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +L P++   ++ A      L +E+++H+  YY    P + D+EYD L R    +   FP 
Sbjct: 39  RLPPVD---LKTAETRARDLRRELAHHNHRYYVLDSPEVSDAEYDRLMRELQGLEAQFPA 95

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
           LA    P+ P  ++GGE      KV H  P LSL  ++N E+  +F  RI +     D  
Sbjct: 96  LA---TPDSPTQRVGGEAAEKFAKVVHRAPMLSLANVFNDEEFTEFDERIRKVVGPAD-- 150

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP----RVLSLN 180
            + +  EPK+DG  IT+RYE G+F+  A RGDG +GEDV+  +R +  +P        + 
Sbjct: 151 -VTYVCEPKLDGLAITLRYENGRFLQGATRGDGTTGEDVTGNLRTVRPLPLELLPEAGMA 209

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
           +P ++EVRGEV+I K DF  LN++    G   +ANPRNAA+G LR+L+P    +R L+  
Sbjct: 210 VPPVLEVRGEVFIRKEDFKKLNEKREEEGEALFANPRNAAAGSLRQLDPKITASRPLSVS 269

Query: 240 VHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           ++ +  T            L+ ++ LG PVN+   +A    G+ + Y      R  L ++
Sbjct: 270 LYEIVPTEGVPAFDTHTAKLEYLQKLGLPVNHH-ERAQGLEGVRAAYQAALKGRHALKFE 328

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           +DG+V KVD    +++LG+ ++SPRW +++KF  ++ STR+  I++Q+GRTG LTPVA L
Sbjct: 329 VDGMVVKVDSEDQRRRLGQVSKSPRWAVAYKFPPEEESTRVEAIEVQVGRTGALTPVAHL 388

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           +PV +GG  ++ ATLHNED ++            +D+R GD V V+RAG+VIP++V ++ 
Sbjct: 389 KPVKVGGVTVSRATLHNEDELRR-----------KDVRQGDTVFVRRAGDVIPEIVSVVP 437

Query: 419 NERHPD 424
           N+R  D
Sbjct: 438 NQRPAD 443


>gi|28493381|ref|NP_787542.1| DNA ligase [Tropheryma whipplei str. Twist]
 gi|28476422|gb|AAO44511.1| DNA ligase [Tropheryma whipplei str. Twist]
          Length = 634

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 173/667 (25%), Positives = 302/667 (45%), Gaps = 73/667 (10%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M  R+ +P     ++   + +  L  +I      YYQ +  ++ D EYDAL+       H
Sbjct: 1   MTTRRNMPHPDGDLD---RRIELLTAQIIAARKAYYQENTSLMSDVEYDALEHELKDAEH 57

Query: 61  AFPDLARSEDPNGPLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
           A        D N P   +G          V H  P LSL+ +++++ L  +  +  +   
Sbjct: 58  A----KGFSDRNSPSLTVGIAAQLNLFEPVKHIEPMLSLDNVFSLDQLHSWYEKTKKIC- 112

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
             + +   F  E KIDG  +++RY  G  + AA RGDG  GED++  +  +P+IP    +
Sbjct: 113 -PEGDQCTFVCELKIDGVGVSLRYANGYLISAATRGDGAIGEDITQNMLYVPSIP--PRI 169

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNF 238
            +P I E+RGE +I +++F  +N ++     K +ANPRN  SG +R   P       ++F
Sbjct: 170 ALPGIFEIRGEAFIKRDEFDRIN-QLSLERSKQFANPRNFVSGCIRTKTPNMRYLESISF 228

Query: 239 FVHGL--------------------GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTF 278
           + HG                     G        G +    ++     PVN+  R    F
Sbjct: 229 YAHGFTQVYGYTSGGMNLHSDITASGGVKTEIEHGMFSAYSRLSECKIPVNSYNRLCTNF 288

Query: 279 HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTR 338
             I SY   ++  R  +PY IDG+V K+D    Q  LG   ++PRW +++KF  +   TR
Sbjct: 289 SEIESYIENIRLNRQCVPYAIDGIVVKIDSLQKQALLGSTTKAPRWAVAYKFPSESTVTR 348

Query: 339 LLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVG 398
           LLDI++ +GRTG +TP A L+P+ + G+ ++ ATLHN           + + G +D+ +G
Sbjct: 349 LLDIEVSVGRTGRVTPYAVLQPIQLDGSEVSRATLHN-----------QKVIGDKDLLIG 397

Query: 399 DRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           D V +++AG+++P+V+  +  +R      F  PS CP C + ++      +       RC
Sbjct: 398 DYVRIRKAGDIVPEVLCALPEKRDGSEVLFKMPSLCPSCGAELM-----PSKLGDIDLRC 452

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQ------QLDFFFKSEDPAFSIRIPADIFT 512
               +C  Q   RL++  SR   +I  L ++       L  F KS +         D+  
Sbjct: 453 PNMQSCLVQLAGRLEYIGSRGVLDIAYLAEENAYALSHLRKFGKSAEVQLFKITIDDLVA 512

Query: 513 LQRRQQTSTTKIENILGF-------GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
           L+   + +        G           S  ++ DSI + +   L +F+ +L IRH+G  
Sbjct: 513 LEFMYKGNMRSPFRKKGDSFPGFEEPTKSAQDMVDSIERAKRSPLWKFLLALNIRHIGPA 572

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A++LA ++ S ++                  L++V  +G+ IA ++ +++++P  +  V
Sbjct: 573 SAKALADHFGSIESIINA----------KIDELLKVRSLGETIAISVHDWFRDPWRVELV 622

Query: 626 EALLKEV 632
                + 
Sbjct: 623 NTWRSDG 629


>gi|168334213|ref|ZP_02692416.1| DNA ligase, NAD-dependent [Epulopiscium sp. 'N.t. morphotype B']
          Length = 639

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 183/704 (25%), Positives = 320/704 (45%), Gaps = 73/704 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
             +  L   +   +  Y Q    I+ + EYD L    + +             N    KI
Sbjct: 5   ARMKELVTLLDKANFAYEQEDTEIMSNLEYDKLVVELEELEKE----LGIIYGNSVTQKI 60

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G  ++  L   +H    LSL+K   I+ L+ F+             +    L  K+DG  
Sbjct: 61  GHTVSNELVTKSHDTSILSLDKTKKIDILQNFL------------GNEEGLLSYKLDGLT 108

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + I+Y+ G  + A  RGDG  GEDV+A  +    +P  L +   + + +RGE  I+ ++F
Sbjct: 109 VVIKYDNGNLIEAVTRGDGQVGEDVTANAKTFRNLP--LKIKYKDKLTIRGEAIITNSNF 166

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257
             +N     V    Y NPRN  SG +R+L+ +    R ++F    +    +     + EM
Sbjct: 167 ARIN----MVEDNKYKNPRNLCSGSVRQLDSSVTAKRNIDFICFAV-MKCDKNFVTKKEM 221

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+ ++  GF V       +     V    +  +  +   +  DGLV   ++ +  K LG 
Sbjct: 222 LKFLKQQGFAVVEAEVVTDKTLKTVVE--KFTANITNKDFQADGLVLSFNDIAYSKSLGV 279

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            ++ P+  +++K+ + Q  T L  I+    RTG + PVA    V++ G  +T+A++HN  
Sbjct: 280 TSKFPKDSMAYKWKDIQKETILEAIEWNTSRTGKINPVAVFAAVDLEGTTVTHASIHNIS 339

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            ++ L            + +GDR++V +A  +IP++++ +         P + P+ C  C
Sbjct: 340 MVEEL-----------KLGLGDRIIVYKANMIIPQILENLSQ-----TGPVAIPNVCSKC 383

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
               +     +T  L       G   C  +QL++L HFVSR+A +I+GL +  L+     
Sbjct: 384 GGNTIIKQEKETKTL-----YCGNPNCLEKQLKQLVHFVSRNAMDIKGLSEAILEKL--- 435

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 I   ++I+++++ +     +I ++ GFG+ S T L  SI+K R ++L RF+ +L
Sbjct: 436 -----PINDVSEIYSIEKYKD----EIISMRGFGEKSYTKLVKSIDKSRKVALHRFVTAL 486

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI  VG E A+ + KY+          +N+ A        L  +  +G +IA+ I  ++ 
Sbjct: 487 GIPQVGVENAKLICKYF---------XDNLDAIRAASEEELHDIEGIGSLIAKEIYRYFN 537

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAV 676
           N  N   ++ LL E      + E N SS ++ K    TG L     R   Q+ + Q G  
Sbjct: 538 NEENKQLIDKLLME--IKFEQKETNSSSSLDGKIFAITGKLNYFENRQALQKKIEQCGGK 595

Query: 677 VSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
           VS  +S KT  +I  +  +   K  KA +L + I++EE F+ +L
Sbjct: 596 VSESISSKTSYLINNEINSTSKKNSKAHELSIPIISEEDFVKML 639


>gi|166216282|sp|Q83G99|DNLJ_TROWT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 628

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 170/649 (26%), Positives = 295/649 (45%), Gaps = 70/649 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L  +I      YYQ +  ++ D EYDAL+       HA        D N P   +
Sbjct: 10  RRIELLTAQIIAARKAYYQENTSLMSDVEYDALEHELKDAEHA----KGFSDRNSPSLTV 65

Query: 79  G-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G          V H  P LSL+ +++++ L  +  +  +     + +   F  E KIDG 
Sbjct: 66  GIAAQLNLFEPVKHIEPMLSLDNVFSLDQLHSWYEKTKKIC--PEGDQCTFVCELKIDGV 123

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++RY  G  + AA RGDG  GED++  +  +P+IP    + +P I E+RGE +I +++
Sbjct: 124 GVSLRYANGYLISAATRGDGAIGEDITQNMLYVPSIP--PRIALPGIFEIRGEAFIKRDE 181

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL------------- 243
           F  +N ++     K +ANPRN  SG +R   P       ++F+ HG              
Sbjct: 182 FDRIN-QLSLERSKQFANPRNFVSGCIRTKTPNMRYLESISFYAHGFTQVYGYTSGGMNL 240

Query: 244 -------GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
                  G        G +    ++     PVN+  R    F  I SY   ++  R  +P
Sbjct: 241 HSDITASGGVKTEIEHGMFSAYSRLSECKIPVNSYNRLCTNFSEIESYIENIRLNRQCVP 300

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           Y IDG+V K+D    Q  LG   ++PRW +++KF  +   TRLLDI++ +GRTG +TP A
Sbjct: 301 YAIDGIVVKIDSLQKQALLGSTTKAPRWAVAYKFPSESTVTRLLDIEVSVGRTGRVTPYA 360

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            L+P+ + G+ ++ ATLHN           + + G +D+ +GD V +++AG+++P+V+  
Sbjct: 361 VLQPIQLDGSEVSRATLHN-----------QKVIGDKDLLIGDYVRIRKAGDIVPEVLCA 409

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           +  +R      F  PS CP C + ++      +       RC    +C  Q   RL++  
Sbjct: 410 LPEKRDGSEVLFKMPSLCPSCGAELM-----PSKLGDIDLRCPNMQSCLVQLAGRLEYIG 464

Query: 477 SRDAFNIEGLGKQ------QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
           SR   +I  L ++       L  F KS +         D+  L+   + +        G 
Sbjct: 465 SRGVLDIAYLAEENAYALSHLRKFGKSAEVQLFKITIDDLVALEFMYKGNMRSPFRKKGD 524

Query: 531 -------GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
                     S  ++ DSI + +   L +F+ +L IRH+G   A++LA ++ S ++    
Sbjct: 525 SFPGFEEPTKSAQDMVDSIERAKRSPLWKFLLALNIRHIGPASAKALADHFGSIESIINA 584

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
                         L++V  +G+ IA ++ +++++P  +  V     + 
Sbjct: 585 ----------KIDELLKVRSLGETIAISVHDWFRDPWRVELVNTWRSDG 623


>gi|28572508|ref|NP_789288.1| DNA ligase [Tropheryma whipplei TW08/27]
 gi|81629879|sp|Q83HX4|DNLJ_TROW8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28410640|emb|CAD67026.1| DNA ligase [Tropheryma whipplei TW08/27]
          Length = 628

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 170/649 (26%), Positives = 295/649 (45%), Gaps = 70/649 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L  +I      YYQ +  ++ D EYDAL+       HA        D N P   +
Sbjct: 10  RRIELLTAQIIAARKAYYQENTSLMSDVEYDALEHELKDAEHA----KGFSDRNSPSLTV 65

Query: 79  G-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           G          V H  P LSL+ +++++ L  +  +  +     + +   F  E KIDG 
Sbjct: 66  GIAAQLNLFEPVKHIEPMLSLDNVFSLDQLHSWYEKTKKIC--PEGDQCTFVCELKIDGV 123

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +++RY  G  + AA RGDG  GED++  +  +P+IP    + +P I E+RGE +I +++
Sbjct: 124 GVSLRYANGYLISAATRGDGAIGEDITQNMLYVPSIP--PRIALPGIFEIRGEAFIKRDE 181

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL------------- 243
           F  +N ++     K +ANPRN  SG +R   P       ++F+ HG              
Sbjct: 182 FDRIN-QLSLERSKQFANPRNFVSGCIRTKTPNMRYLESISFYAHGFTQVYGYTSGGMNL 240

Query: 244 -------GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296
                  G        G +    ++     PVN+  R    F  I SY   ++  R  +P
Sbjct: 241 HSDITASGGVKTEIEHGMFSAYSRLSECKIPVNSYNRLCTNFSEIESYIENIRLNRQCVP 300

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           Y IDG+V K+D    Q  LG   ++PRW +++KF  +   TRLLDI++ +GRTG +TP A
Sbjct: 301 YAIDGIVVKIDSLQKQALLGSTTKAPRWAVAYKFPSESTVTRLLDIEVSVGRTGRVTPYA 360

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            L+P+ + G+ ++ ATLHN           + + G +D+ +GD V +++AG+++P+V+  
Sbjct: 361 VLQPIQLDGSEVSRATLHN-----------QKVIGDKDLLIGDYVRIRKAGDIVPEVLCA 409

Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476
           +  +R      F  PS CP C + ++      +       RC    +C  Q   RL++  
Sbjct: 410 LPEKRDGSEVLFKMPSLCPSCGAELM-----PSKLGDIDLRCPNMQSCLVQLAGRLEYIG 464

Query: 477 SRDAFNIEGLGKQ------QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530
           SR   +I  L ++       L  F KS +         D+  L+   + +        G 
Sbjct: 465 SRGVLDIAYLAEENAYALSHLRKFGKSAEVQLFKITIDDLVALEFMYKGNMRSPFRKKGD 524

Query: 531 -------GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
                     S  ++ DSI + +   L +F+ +L IRH+G   A++LA ++ S ++    
Sbjct: 525 SFPGFEEPTKSAQDMVDSIERAKRSPLWKFLLALNIRHIGPASAKALADHFGSIESIINA 584

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
                         L++V  +G+ IA ++ +++++P  +  V     + 
Sbjct: 585 ----------KIDELLKVRSLGETIAISVHDWFRDPWRVELVNTWRSDG 623


>gi|149924280|ref|ZP_01912652.1| DNA ligase, NAD-dependent [Plesiocystis pacifica SIR-1]
 gi|149814860|gb|EDM74426.1| DNA ligase, NAD-dependent [Plesiocystis pacifica SIR-1]
          Length = 706

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 182/756 (24%), Positives = 304/756 (40%), Gaps = 104/756 (13%)

Query: 7   IPIEALSIEQARK-----ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
             +  L            +  +L   I   +  Y+    P I D  YD L      +  A
Sbjct: 13  PDVSGLDTAAIEAGLPSFDADTLAALIRRTNHEYWNLHAPTIPDPVYDRLVEGLRRLDPA 72

Query: 62  FPDL--ARSEDPNGPLNKIGG----EMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRI 114
            P L       P GP+ +            L   V H+   LSL+K +  EDL  +  + 
Sbjct: 73  HPVLDELGEATPEGPVIEADATASIPPAERLGAPVRHTRAMLSLDKCYGPEDLYSWTEKF 132

Query: 115 YRFWQKKDDNSIFFTLEPKIDGTMITIRYE-KGKFVYAALRGDGHSGEDVSACIRAIPTI 173
                          + PK+DG   ++RY+ +GK   AA RG+G  GED++  +  +  +
Sbjct: 133 ----------EGEVLVMPKMDGVACSLRYDAEGKLFLAATRGNGSEGEDITVNVLEVEDV 182

Query: 174 PRVLSLNIPEI----------IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGI 223
           P+ L                 +EVRGE+++  + F    ++        Y+NPRN  +G 
Sbjct: 183 PQQLDPAAFAELPGPDGAAPAVEVRGELFMKLSVFERYKEQ--------YSNPRNLTAGA 234

Query: 224 LRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282
           ++           L+F+ + L  T     + ++     +R LGF V              
Sbjct: 235 IKHKERGKTKAYTLSFYAYDLQGTELPTEREKFAS---LRALGFAVEECDFVPRGELQAA 291

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342
                 +     + Y+IDG+VY+  E + Q+++GE    PRW +++KF     +T L ++
Sbjct: 292 YERWSARRSADEIDYEIDGVVYRASEVAEQRRMGETGHHPRWSMAYKFQGDTGTTTLEEV 351

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
              + RTG +TPVA  +P+ + GA+I  A L N ++   L            +  G  + 
Sbjct: 352 LWSVSRTGTITPVAIFKPIELSGAMIARAGLFNLNHFDEL-----------GLTAGAAIE 400

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           V R G VIP V  ++      +      P  CP C S  VR       +      C+   
Sbjct: 401 VTRRGGVIPYVERVVTPGAEGETFDI--PKRCPACNSEAVRRK----KRDGEFLYCSKPE 454

Query: 463 ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT 522
            C + +L  L+HF      +I+G G + +         A  +  PAD +TL+        
Sbjct: 455 GCGSARLGELQHFA--KVVDIQGFGPKVVTQAVD----AGLLSSPADFYTLRVEDL---- 504

Query: 523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582
             E     G  S  NL   ++  R I L  F+ SLGI H+G + A  LA  + +      
Sbjct: 505 --EEFDRLGRRSAENLVAQVDAHRRIELPIFLQSLGIDHLGKQNAVLLANEFRTL----- 557

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
                         +L+ V  + D IA A++   +       ++ALL+ V+         
Sbjct: 558 -----AGVRGVSREALLEVKGIKDAIADALLAGLETRA--ELIDALLEHVTVVDLPERDP 610

Query: 643 VSSE----------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
            +            +  K  +FTG L+   R +AQE V   G V ++ +S+  D ++VG 
Sbjct: 611 EAEAEAAAAAAEGALGGKTFLFTGALEAFTRKQAQEKVEANGGVPASGVSKSLDYLVVGA 670

Query: 693 NPG---SKLEKAQQL--G---VKIMNEEQFLFLLQQ 720
             G   SK +KA++L  G   +K+++E  FL ++ +
Sbjct: 671 GKGAKSSKQKKAEKLIDGGAALKVISEGDFLAMIGE 706


>gi|162452733|ref|YP_001615100.1| DNA ligase [Sorangium cellulosum 'So ce 56']
 gi|190359289|sp|A9F3W3|DNLJ_SORC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|161163315|emb|CAN94620.1| DNA ligase [Sorangium cellulosum 'So ce 56']
          Length = 676

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 164/725 (22%), Positives = 274/725 (37%), Gaps = 100/725 (13%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +  +  L + I  +   YY    P I D+ +DAL+    A+  A P LA          +
Sbjct: 26  KARIEELAERIEKYRASYY-AGHPEISDAAFDALEDELRALDPAHPVLA----------R 74

Query: 78  IGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF--------- 127
           +G         K  H IP  SL K+ + ++L  ++ R      K                
Sbjct: 75  VGSASLITEWEKARHEIPMGSLNKVVSEDELLGWVARCDEILVKDGHGDGGTGAAPPAPG 134

Query: 128 ---------FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
                    F  E K+DG  I + Y+ GK V A  RGDG  GE ++A +  +  IP  + 
Sbjct: 135 SISSVAGDLFVAE-KLDGISIEVIYKGGKLVDAITRGDGEWGERITANVARMKGIPSRIR 193

Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF 238
                 + VRGE+ +  +D        +        +PRN A+G  +R +      +   
Sbjct: 194 E--KGRLSVRGEIILRLSD--------MKRHFPGVTSPRNMAAGAAKRFDGQGA-EHCTV 242

Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
             + +    EI          +      P        +       Y +E   +R+ L Y+
Sbjct: 243 LFYDVADHLEIPTCRARFAWLRELGFATPQTAHGSVEDVVKLYRRYSSE---LRAGLDYE 299

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDGLV  VD   +Q  LG+  R PR  ++ KFA     T ++ I    G +G +TPVA +
Sbjct: 300 IDGLVVYVDSLHVQGLLGDVNRRPRGAVAFKFASPAKVTTVVAIQWDTGPSGRVTPVAIV 359

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + GA +  A+LHN   ++ L            I VGD VLV R  +VIP V +++ 
Sbjct: 360 EPVELAGANVRRASLHNSANVRSL-----------GIGVGDEVLVSRRNDVIPYVEEVV- 407

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
                       PS CP+C + +V +      +  A   C   +                
Sbjct: 408 ---EKRGPVAVPPSVCPVCSAPLVVEGEYLLCRNAA---CRALIEGRIHNWIDAI----- 456

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
                     +  D   +    A  +R P D++ L      +   I ++   G+ S T  
Sbjct: 457 -------GALEWGDKLIEQVVAAGLVREPLDLYKL------TVKSIADLDRRGEKSATKC 503

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLS 597
            + +  R  ++L  F+ +LGI     + AR L    Y + +                   
Sbjct: 504 LEQLKSRLPLALPVFLAALGIEGFAIQTARLLVSAGYTTIEKLLAAGE----------DE 553

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657
           L  +P +G I A +IV   +       +  LL      +    +     +      FTG 
Sbjct: 554 LAGIPGLGAIKAASIVRGLRARS--DEIGRLLAAGIVPVAPEAE---GPLAGLTFCFTGA 608

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715
             +  R +    V   G  V   ++++ + +++ D  +  SK  KA++ G K++ E+   
Sbjct: 609 GAR-PRGELTHLVESSGGRVLNSVTKELNYLVIADVASTSSKAVKARKYGTKLITEDDLD 667

Query: 716 FLLQQ 720
            L+ +
Sbjct: 668 KLIAE 672


>gi|33519955|ref|NP_878787.1| DNA ligase [Candidatus Blochmannia floridanus]
 gi|81666906|sp|Q7VRU2|DNLJ_BLOFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33504301|emb|CAD83193.1| DNA ligase [Candidatus Blochmannia floridanus]
          Length = 594

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 199/627 (31%), Positives = 316/627 (50%), Gaps = 49/627 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++  +  +  L + ++Y +  YY  S+  + D EYD L      +   +P L      + 
Sbjct: 1   MKLIKNRVQILRERLNYLEYLYYVKSESKVSDEEYDILLEELRQLEFKYPYLI---TKSS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS---IFFTL 130
               I    + SL ++ H  P LSL  I +   L  F  RI        + +   I +  
Sbjct: 58  STQSISNVCDNSLNRIRHQKPMLSLNSIRDKSQLLLFDKRIKYKLSNHYNINQNLIVYCC 117

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI----IE 186
           E KIDG  ++I Y++GK V+AA RGDG  GE+V+  + AI +IP+ L  N  EI    +E
Sbjct: 118 ELKIDGVALSILYKQGKLVHAATRGDGKIGENVTKNVNAIDSIPKNLKKNNNEILPDLLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245
           +RGE++ISK  F  LN EM++ G+K ++N RNAASG LR+L+P     R L F  +G+  
Sbjct: 178 IRGEIFISKLSFSKLNQEMLSSGKKVFSNARNAASGSLRQLDPHVTELRSLVFCCYGISY 237

Query: 246 TSEIF--AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
            + +       +  L+     G  +NN ++  +    ++ YYN ++ IRS L Y IDG+V
Sbjct: 238 YAGLKQLPNSHWGRLKLCNRWGLSINNYIQIVSGIDPVLEYYNYVRKIRSELEYQIDGIV 297

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+D    Q QLG   R+P W +++KF  +   T+L D+  ++GRTG++TP+A + PV I
Sbjct: 298 IKIDNCIYQDQLGCGFRAPNWAVAYKFPAELKLTKLNDVVFKVGRTGLITPIAYINPVVI 357

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           G  +I    +HN + +K L           ++ +GD V+V+R+G+VIPK++ II+  R  
Sbjct: 358 GNVIIKKVNMHNVNEVKRL-----------NLMIGDTVIVQRSGDVIPKILKIILENRVD 406

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +A+    P FCP C S +  + N       +  RC   L C AQ+   LKHF SR A NI
Sbjct: 407 NAKFIKIPEFCPSCGSILKVEDN-----KSSVLRCLAKLTCLAQRKSALKHFASRKAMNI 461

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           +G+G + ++           I  P D F+L +       K+  +  +G+ S   L  SI 
Sbjct: 462 QGMGSRVINQLVDK----GLICTPVDFFSLSKE------KLLCLDRYGEKSAERLLQSIL 511

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             + I+L  FI++LGI  VG  ++  LA  Y + +N              D  S +++  
Sbjct: 512 IAKEITLSAFIYALGIPGVGESVSNKLAYMYRTIENLMNA----------DLQSFLQLKF 561

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLK 630
           +G I A  I  F     N   ++ L++
Sbjct: 562 IGKIAAMNIYSFLHQSDNYNNIQGLIR 588


>gi|289759140|ref|ZP_06518518.1| LOW QUALITY PROTEIN: NAD-dependent DNA ligase LigA [Mycobacterium
           tuberculosis T85]
 gi|289714704|gb|EFD78716.1| LOW QUALITY PROTEIN: NAD-dependent DNA ligase LigA [Mycobacterium
           tuberculosis T85]
          Length = 449

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 137/463 (29%), Positives = 222/463 (47%), Gaps = 30/463 (6%)

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
           R  G P        N   G+    +     R  + ++IDG+V KVDE +LQ++LG  +R+
Sbjct: 15  RAWGLPGFRTHHPGNRPAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGFTSRA 74

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ +  ATLHN   IK 
Sbjct: 75  PRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNASEIKR 134

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                      + + +GD V++++AG+VIP+V+  +V  R    + F  P+ CP C S +
Sbjct: 135 -----------KGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPECGSPL 183

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
             +      +  A  RC     C  Q  ER+ H  SR+  +IE LG +      +++   
Sbjct: 184 APE-----KEGDADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAK--- 235

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             I    ++F L  R    T       G    +   L  +++K +   L R + +L IRH
Sbjct: 236 -VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALSIRH 294

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG   AR+LA  + S    A                L  V  VG  IA A+ E++    +
Sbjct: 295 VGPTAARALATEFGSLDAIAAA----------STDQLAAVEGVGPTIAAAVTEWFAVDWH 344

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
              V+         +   +++V   +    +V TG+L    R  A+E +   G   +  +
Sbjct: 345 REIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGSV 404

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           S+KT+ ++ GD+PGSK +KA +LGV I++E+ F  LL     +
Sbjct: 405 SKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLADGPAS 447


>gi|237757130|ref|ZP_04585563.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237690707|gb|EEP59882.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 490

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 174/487 (35%), Positives = 270/487 (55%), Gaps = 35/487 (7%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +  + L+ E+A+K +  L + I +HD  YY  ++P+I D EYD L +    I + +P+L 
Sbjct: 20  LDAKKLTKEEAKKIVEDLREVIRFHDWRYYILAQPVISDYEYDKLFKLLKDIENKYPELI 79

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
               P+ P  +I  E+     +V H  P LSL+  +N  DLR F  R+         + +
Sbjct: 80  ---TPDSPTQRIPSEITKVFPQVKHLTPMLSLDNSYNEADLRDFDRRVRELTGL---DKV 133

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-- 184
            +++EPK DG  I++ YEK  FV  A RGDG  GE+++  ++ I TIP     +   I  
Sbjct: 134 EYSVEPKFDGAGISLIYEKDLFVRGATRGDGEVGEEITNNLKVIKTIPLSAKFSQYGIDK 193

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL 243
           +E+RGEV I K+ F  +N+E +  G   +ANPRNAA+G +R  +P++   R L  FV+ +
Sbjct: 194 VEIRGEVLIRKDLFKKMNEERLEEGLPLFANPRNAAAGSIRLQDPSEVAKRNLEAFVYHI 253

Query: 244 GKTSEI-------FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTL 295
               +          K   + ++ +  LGF      ++       ++ Y  E +  R T 
Sbjct: 254 TYAEKDGKNLLGTVLKKHSDNIKMLHELGFKTPYPVMKVCIGIEEVIQYCEEWQRKRDTY 313

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           PY+IDG+V KV++ SL  +LG  +  PRW I+ KF  +QA+T+++++  Q+GRTG +TPV
Sbjct: 314 PYEIDGMVIKVNDISLYDKLGFTSHHPRWAIAFKFKARQATTKIINVVFQVGRTGAITPV 373

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A+LEPV IGG ++++ +L NED+I+            +DIR+GD VLV+RAG+VIP VV 
Sbjct: 374 AKLEPVEIGGVIVSSVSLINEDFIR-----------EKDIRIGDTVLVERAGDVIPYVVM 422

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           +I   R  + +P  FP  CP C S +V+          A +RC   + C AQ +ERL HF
Sbjct: 423 VIKEARTGNEKPIEFPKTCPSCGSPIVKPPGE------AVYRCVN-INCPAQVIERLIHF 475

Query: 476 VSRDAFN 482
            S+DA  
Sbjct: 476 ASKDAMR 482


>gi|254430924|ref|ZP_05044627.1| DNA ligase, NAD-dependent [Cyanobium sp. PCC 7001]
 gi|197625377|gb|EDY37936.1| DNA ligase, NAD-dependent [Cyanobium sp. PCC 7001]
          Length = 667

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 165/517 (31%), Positives = 256/517 (49%), Gaps = 40/517 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E  R  ++ L++ ++     YY    P++ D  YD L R    +  A P+L R   P+ 
Sbjct: 5   PEPLRDRIAELQRLLTQAAHAYYVLDAPVMEDPVYDRLYRELLELEQAHPELIR---PDS 61

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-----KDDNSIFF 128
           P  ++GG        V H I  LSL+  ++ E+L  +  R+ +   +     +    +  
Sbjct: 62  PTQRVGGSPAEGFRSVEHRIALLSLDNAFSTEELEAWYARLLKVLDRTPAAGEPLPDLAM 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEV 187
             E KIDG  + + Y +G    AA RGDG  GE+++A +R I ++P  L     P  +EV
Sbjct: 122 VGELKIDGNALALSYREGLLERAATRGDGERGEEITANVRTIQSVPLRLRLQAPPAWVEV 181

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL--- 243
           RGE  I    F A+N E +A G   +ANPRNA +G LR+L+P     R L+FF + L   
Sbjct: 182 RGEALIPDGTFAAINAERLARGEPAFANPRNACAGTLRQLDPQVVADRRLDFFAYTLHLP 241

Query: 244 -----GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
                G         Q+E L  +R  GF VN           + +++   +  R  LPY 
Sbjct: 242 DDWQPGPGDPPRPSSQWESLAWLRAAGFKVNPNAELLADLAAVEAFFTRWEPERRQLPYA 301

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
            DG+V K+D+  LQ   G   ++PRW I+ K+A ++A +RLL +  Q+GRTG++TPVA  
Sbjct: 302 TDGVVVKLDDLRLQADAGFTQKAPRWAIALKYAAEEAPSRLLRLSCQVGRTGVVTPVAEF 361

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G  ++ ATLHN D +  L           D+  GD ++V++AGE+IP+VV ++ 
Sbjct: 362 EPVALAGTSVSRATLHNADRLAEL-----------DLHAGDTIVVRKAGEIIPEVVRVLP 410

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
             R   A+    P  CP C S +VR+         AA RC    +C A     L+H+VS+
Sbjct: 411 ELRPAAARRLELPRHCPECGSELVREAGE------AATRCVNS-SCPAILRGALRHWVSK 463

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQR 515
            A +++GLG + ++           +R  A ++ L  
Sbjct: 464 AALDVDGLGSKLIEQLVDR----GLVRSIAGLYRLDA 496


>gi|254229732|ref|ZP_04923141.1| DNA ligase, NAD-dependent [Vibrio sp. Ex25]
 gi|151937777|gb|EDN56626.1| DNA ligase, NAD-dependent [Vibrio sp. Ex25]
          Length = 407

 Score =  319 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 165/444 (37%), Positives = 256/444 (57%), Gaps = 39/444 (8%)

Query: 278 FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAST 337
              + +YY ++   R  LPY+IDG+V K+D+ ++Q++LG  AR+PRW I++KF  ++  T
Sbjct: 1   MADVKAYYQDILQRRDALPYEIDGVVIKIDDIAVQERLGFVARAPRWAIAYKFPAQEEMT 60

Query: 338 RLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRV 397
            L +++ Q+GRTG +TPVA+LEPV +GG  ++NATLHN D I+ L            +++
Sbjct: 61  TLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIERLQ-----------VKI 109

Query: 398 GDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR 457
           GD V+++RAG+VIP+VV +I   R   A+   FP+ CP+C S V R          A  R
Sbjct: 110 GDHVVIRRAGDVIPQVVSVIKERRPETARDIIFPTQCPVCGSHVERIEGE------AVTR 163

Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ 517
           CTGGL C AQ+ + LKHFVSR A +++GLG + ++     E     ++ PAD+F L    
Sbjct: 164 CTGGLVCQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDRE----MVKTPADLFKL---- 215

Query: 518 QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
             S   +  +   G  S  N+ +++ K +  +L RF++SLGIR VG   A +LA ++ + 
Sbjct: 216 --SAGILTVLDRMGPKSAQNIVNALEKSKETTLPRFLYSLGIREVGEATAANLAMHFKTL 273

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS--PS 635
           +                   LI V  +G ++AQ I  F+   +N   V+ LL++    P 
Sbjct: 274 EAIQNANE----------EQLIEVQDIGAVVAQHITTFFSEEQNQAVVKDLLEQGIHWPE 323

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
           I   E+     +E K +V TGTL ++ R +A+E +  LGA V+  +S+KTDI+  G+N G
Sbjct: 324 INTTEQVGELPLEGKTVVLTGTLSQLGRTEAKEALQSLGAKVTGSVSKKTDILFAGENAG 383

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SKL KAQ+LG++I  E+  L L+ 
Sbjct: 384 SKLAKAQELGIEIKTEQDLLELMN 407


>gi|13235502|emb|CAC33764.1| DNA ligase [Rickettsia typhi]
          Length = 492

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 191/508 (37%), Positives = 313/508 (61%), Gaps = 23/508 (4%)

Query: 213 YANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
           +ANPRNAA+G +R+L+      R L +F++  G T +  A  Q ++L K++ L F VN  
Sbjct: 1   FANPRNAAAGSIRQLDVAITAQRPLKYFIYSGGVTEKNLASTQEQLLAKLKALSFSVNEI 60

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
            + A++   I ++Y  +K+ R  LPY+IDG+VYK++ F++Q ++G  ARSPR+ I+HKF 
Sbjct: 61  SKLASSEEEIFAFYEYLKTNRHNLPYEIDGVVYKLNNFAMQNRMGFIARSPRFAIAHKFP 120

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
                T+LL I +Q+GRTG+LTPVA L+P+ IGG +++ ATLHN   I            
Sbjct: 121 AIIGQTKLLSITVQVGRTGMLTPVAELDPLEIGGVVVSRATLHNFQDIAR---------- 170

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +D+R+ D V ++RAG+VIP++  + +++R  D   F  P FCP C S++          
Sbjct: 171 -KDVRIKDYVFLQRAGDVIPQITGVDISKRSNDTVKFDTPVFCPSCNSKLRY------VS 223

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
                RC  GL C AQ  ER+ HFVS++A +I GLG++Q+ F          I  P DIF
Sbjct: 224 EDIIIRCDNGLNCPAQNYERICHFVSKNAMDIAGLGRKQVAFLIDKR----LISNPLDIF 279

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
            L+++ +T+  ++EN+ G+G  SV NL+ +I K + ISL+RFI++LGIRH+G + A+ LA
Sbjct: 280 FLKKKNETNLIRLENMDGWGKKSVANLWQNIEKSQKISLQRFIYALGIRHIGEQNAKLLA 339

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           + ++SY NF  ++  +  +++D +  L  +  +GD +   I++F+    NI  ++ L   
Sbjct: 340 REFVSYNNFIAQMELLSKNDSDVYQKLNDLEGIGDKMLVDIIDFFYVKENIQLIKKLGAV 399

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++    +  +  +  +  K LVFTG+L+ I R +A+E   +LGA V++ +S  TD++IVG
Sbjct: 400 LNIEDYKETREQN-ILTGKILVFTGSLKTISRVEAKEIAEKLGAKVASSVSSNTDLLIVG 458

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
            N GSKL+KA++L +KI++E ++L  ++
Sbjct: 459 VNGGSKLKKAKELNIKIIDEAEWLAFIK 486


>gi|289178474|gb|ADC85720.1| NAD-dependent DNA ligase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 889

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 159/509 (31%), Positives = 263/509 (51%), Gaps = 35/509 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + +  L++EQA +  S L   +      YY    P+  D+ YDA       +   FP L 
Sbjct: 64  LDVSKLNVEQAVRLWSRLSAWVEGDQVAYYVKDAPLSSDAAYDARMNCLKRLESEFPQL- 122

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             + P  P +++GG  +     V H    +SL+ +++ E+LR +   + +  +  +D  +
Sbjct: 123 --DTPQSPTHRVGGTFSNDFTAVRHPSQMMSLDDVFSFEELRAWYDGVRKDLEWPEDKLL 180

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I +IP        +IP+
Sbjct: 181 PMTCEVKIDGLALNLIYRNGVLTQGLTRGDGVTGEDITMNVRTIHSIPTNLDGPEGDIPD 240

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
           ++E+RGEV++  +DF  LN+     GR P+ANPRNAA+G LR+ +P     R+L+F+ HG
Sbjct: 241 MVEIRGEVFMRWDDFHKLNEANEDAGRPPFANPRNAAAGSLRQKDPRITAQRHLSFYAHG 300

Query: 243 LGKTSE---------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           +G+               + Q +     R  G P++   R+   F  I+         R 
Sbjct: 301 IGELVWGSGKPVDVADEVRNQSDAYTMYRKWGVPISPHNREVTDFDQILDMIEYYGEHRG 360

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + + +DG+V KVD+ +LQ++LG  +R+PRW I++K+  ++ +T+LL+I +Q+GRTG +T
Sbjct: 361 DIEHALDGIVVKVDDLALQRRLGSTSRAPRWAIAYKYPPEEVNTKLLNIVVQVGRTGRVT 420

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L PV + G+ ++  TLHN   +K            + I +GD V+V++AG+VIP++
Sbjct: 421 PVAILNPVYVAGSTVSRTTLHNAYEVKR-----------KGILIGDTVVVRKAGDVIPEL 469

Query: 414 VDIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           V  ++ +R    Q    F  P+ CP C + +  +      +     RC    +C AQ  E
Sbjct: 470 VGPVIAKREGHEQDLREFVMPTRCPSCDTVLRYE-----KEGDKDLRCPNSESCPAQLAE 524

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           R+ +  +R AF+IE LG Q        ED
Sbjct: 525 RVINLAARKAFDIEHLGDQSAVALTNPED 553



 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 16/194 (8%)

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
              +   + D I K ++  L R + +L IRHVG   A +LAK++ +    A         
Sbjct: 702 PTENTRKMLDEIEKAKHTDLSRVLVALSIRHVGPPTAFTLAKHFKTLDALADA------- 754

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-----CAVEALLKEVSPSIGRHEKNVSS 645
                  L ++  +G  IA +I  F++  R         +EA        +  H++ +  
Sbjct: 755 ---SAEELEQIDGIGAEIADSIATFFEEARMPGNWRGRVLEAWKAAGV-GMSTHDEGLPQ 810

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +E K +V TGTL+   R  A+E + + G   S  +SRKTD ++VG NPGSK  KA++LG
Sbjct: 811 TLEGKSVVVTGTLEHFSRESAKEAIERRGGKASGSVSRKTDWVVVGANPGSKATKAEELG 870

Query: 706 VKIMNEEQFLFLLQ 719
           + I++E+QF  LL 
Sbjct: 871 IPIIDEQQFDTLLA 884


>gi|183601766|ref|ZP_02963136.1| LigA [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683704|ref|YP_002470087.1| DNA ligase, NAD-dependent [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190736|ref|YP_002968130.1| LigA [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196142|ref|YP_002969697.1| LigA [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|254781258|sp|B8DU32|DNLJ_BIFA0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|183219372|gb|EDT90013.1| LigA [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621354|gb|ACL29511.1| DNA ligase, NAD-dependent [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249128|gb|ACS46068.1| LigA [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250696|gb|ACS47635.1| LigA [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793725|gb|ADG33260.1| LigA [Bifidobacterium animalis subsp. lactis V9]
          Length = 863

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 159/509 (31%), Positives = 263/509 (51%), Gaps = 35/509 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + +  L++EQA +  S L   +      YY    P+  D+ YDA       +   FP L 
Sbjct: 38  LDVSKLNVEQAVRLWSRLSAWVEGDQVAYYVKDAPLSSDAAYDARMNCLKRLESEFPQL- 96

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             + P  P +++GG  +     V H    +SL+ +++ E+LR +   + +  +  +D  +
Sbjct: 97  --DTPQSPTHRVGGTFSNDFTAVRHPSQMMSLDDVFSFEELRAWYDGVRKDLEWPEDKLL 154

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I +IP        +IP+
Sbjct: 155 PMTCEVKIDGLALNLIYRNGVLTQGLTRGDGVTGEDITMNVRTIHSIPTNLDGPEGDIPD 214

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
           ++E+RGEV++  +DF  LN+     GR P+ANPRNAA+G LR+ +P     R+L+F+ HG
Sbjct: 215 MVEIRGEVFMRWDDFHKLNEANEDAGRPPFANPRNAAAGSLRQKDPRITAQRHLSFYAHG 274

Query: 243 LGKTSE---------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           +G+               + Q +     R  G P++   R+   F  I+         R 
Sbjct: 275 IGELVWGSGKPVDVADEVRNQSDAYTMYRKWGVPISPHNREVTDFDQILDMIEYYGEHRG 334

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + + +DG+V KVD+ +LQ++LG  +R+PRW I++K+  ++ +T+LL+I +Q+GRTG +T
Sbjct: 335 DIEHALDGIVVKVDDLALQRRLGSTSRAPRWAIAYKYPPEEVNTKLLNIVVQVGRTGRVT 394

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L PV + G+ ++  TLHN   +K            + I +GD V+V++AG+VIP++
Sbjct: 395 PVAILNPVYVAGSTVSRTTLHNAYEVKR-----------KGILIGDTVVVRKAGDVIPEL 443

Query: 414 VDIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           V  ++ +R    Q    F  P+ CP C + +  +      +     RC    +C AQ  E
Sbjct: 444 VGPVIAKREGHEQDLREFVMPTRCPSCDTVLRYE-----KEGDKDLRCPNSESCPAQLAE 498

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           R+ +  +R AF+IE LG Q        ED
Sbjct: 499 RVINLAARKAFDIEHLGDQSAVALTNPED 527



 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 16/194 (8%)

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
              +   + D I K ++  L R + +L IRHVG   A +LAK++ +    A         
Sbjct: 676 PTENTRKMLDEIEKAKHTDLSRVLVALSIRHVGPPTAFTLAKHFKTLDALADA------- 728

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-----CAVEALLKEVSPSIGRHEKNVSS 645
                  L ++  +G  IA +I  F++  R         +EA        +  H++ +  
Sbjct: 729 ---SAEELEQIDGIGAEIADSIATFFEEARMPGNWRGRVLEAWKAAGV-GMSTHDEGLPQ 784

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +E K +V TGTL+   R  A+E + + G   S  +SRKTD ++VG NPGSK  KA++LG
Sbjct: 785 TLEGKSVVVTGTLEHFSRESAKEAIERRGGKASGSVSRKTDWVVVGANPGSKATKAEELG 844

Query: 706 VKIMNEEQFLFLLQ 719
           + I++E+QF  LL 
Sbjct: 845 IPIIDEQQFDTLLA 858


>gi|215447287|ref|ZP_03434039.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T85]
          Length = 416

 Score =  317 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 132/444 (29%), Positives = 217/444 (48%), Gaps = 30/444 (6%)

Query: 281 IVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340
           +    +     R  + ++IDG+V KVDE +LQ++LG  +R+PRW I++K+  ++A T+LL
Sbjct: 1   MRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGFTSRAPRWAIAYKYPPEEAQTKLL 60

Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
           DI + +GRTG +TP A + PV + G+ +  ATLHN   IK            + + +GD 
Sbjct: 61  DIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNASEIKR-----------KGVLIGDT 109

Query: 401 VLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG 460
           V++++AG+VIP+V+  +V  R    + F  P+ CP C S +  +      +  A  RC  
Sbjct: 110 VVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPECGSPLAPE-----KEGDADIRCPN 164

Query: 461 GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS 520
              C  Q  ER+ H  SR+  +IE LG +      +++     I    ++F L  R    
Sbjct: 165 ARGCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAK----VIADEGELFALTERDLLR 220

Query: 521 TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580
           T       G    +   L  +++K +   L R + +L IRHVG   AR+LA  + S    
Sbjct: 221 TDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAI 280

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
           A                L  V  VG  IA A+ E++    +   V+         +   +
Sbjct: 281 AAA----------STDQLAAVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERD 330

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
           ++V   +    +V TG+L    R  A+E +   G   +  +S+KT+ ++ GD+PGSK +K
Sbjct: 331 ESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDK 390

Query: 701 AQQLGVKIMNEEQFLFLLQQYNTT 724
           A +LGV I++E+ F  LL     +
Sbjct: 391 AVELGVPILDEDGFRRLLADGPAS 414


>gi|171742735|ref|ZP_02918542.1| hypothetical protein BIFDEN_01849 [Bifidobacterium dentium ATCC
           27678]
 gi|283456203|ref|YP_003360767.1| NAD-dependent DNA ligase [Bifidobacterium dentium Bd1]
 gi|171278349|gb|EDT46010.1| hypothetical protein BIFDEN_01849 [Bifidobacterium dentium ATCC
           27678]
 gi|283102837|gb|ADB09943.1| NAD-dependent DNA ligase [Bifidobacterium dentium Bd1]
          Length = 897

 Score =  317 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 166/509 (32%), Positives = 258/509 (50%), Gaps = 34/509 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + +LS E A +  + +   +      YY    PI  D+ YDA  R   A+   FP L 
Sbjct: 61  LDVSSLSAEAAARLWAKVAAWVESDQIAYYIDDAPISSDAAYDARLRCLQALESQFPSL- 119

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             + P  P +++GG  +     V H    +SL+ +++IE+LR +   + R     +   +
Sbjct: 120 --DTPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVIRDLDWPESKPL 177

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I TIP+       +IPE
Sbjct: 178 PMTCEVKIDGLALNLVYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEGDIPE 237

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E+RGEV++  +DF ALN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 238 FVEIRGEVFMRWDDFAALNGENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 297

Query: 243 LGKTSE--------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           +G                 Q E        G PV+   R+  +F  I+   +     R  
Sbjct: 298 IGSLRWGAGRADRHDVINHQSEAYALYEKWGVPVSPHNREITSFTDILDMIDYYGEHRGD 357

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +TP
Sbjct: 358 IEHALDGIVVKVDDLGLQRALGATSRAPRWAIAYKYPPEEVNTDLLDITVQVGRTGRVTP 417

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ ++  TLHN   ++            + + +GD V+V++AG+VIP++V
Sbjct: 418 VAILKPVYVAGSTVSRTTLHNPFEVER-----------KGVLIGDTVVVRKAGDVIPELV 466

Query: 415 DIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R         F  P+ CP C + +         K     RC    +C AQ  ER
Sbjct: 467 GPVLERRKGREESLHAFVMPTHCPSCGAELA-----PAKKGDKDIRCPNVESCPAQLTER 521

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           + +  SR AF+IE LG Q        E+ 
Sbjct: 522 IINLASRKAFDIEHLGDQSAIALTNPEED 550



 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 16/199 (8%)

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
           + +      +   + D + K R++ L R + +L IR +G   AR++A  + S        
Sbjct: 705 QPVYVRPAENTRKMLDEMEKARHVDLWRVLVALSIRRLGPPTARTIATAFGSLDAIEHA- 763

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QNPRNIC--AVEALLKEVSPSIGRH 639
                        L  +  +G  IA+++V ++     P N     ++A        +   
Sbjct: 764 ---------SVEELSAIDGIGPEIAESVVTWFTAAHEPGNWRGTVLDAWKTAGVGVVAET 814

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
             ++   +  K +V TG+L    R  A+E +   G   +  +SRKTD ++VG+N GSK  
Sbjct: 815 N-DLPQTLAGKTVVVTGSLVDFSRDSAKEAIISHGGKAAGSVSRKTDWVVVGENAGSKAA 873

Query: 700 KAQQLGVKIMNEEQFLFLL 718
           KA++LG+ ++NE+QF  LL
Sbjct: 874 KAEELGIPMLNEDQFKQLL 892


>gi|1770452|emb|CAA66920.1| ligase-like protein [Homo sapiens]
          Length = 454

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 151/446 (33%), Positives = 238/446 (53%), Gaps = 22/446 (4%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
            +  PIE LS   A++E++ L+ +++ +   YY+   P++ D  YDAL  R  A+  AFP
Sbjct: 3   PEFTPIEQLSTSAAQQEVAQLQADLTEYGVAYYEQDAPLVEDHVYDALYARLVALESAFP 62

Query: 64  DLARSEDPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
                   + P   +GG +    L KV H  P LSL  ++++E+L  +  R  +    + 
Sbjct: 63  QFVTQ---DSPTQNVGGALTKSGLAKVEHPAPMLSLGDVFSLEELAAWDERTTKSLGFQS 119

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
                + LE KIDG  + + Y  G+ V A+ RG+G  GEDV+  ++ I  IP+ L+  + 
Sbjct: 120 ----PYNLELKIDGLAVALTYVDGRLVQASTRGNGTIGEDVTRNVKTIKAIPQQLTEPL- 174

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH 241
             IEVRGE+Y+ K  F ALN +  A G +P+ANPRNAA+G LR+L+      R L+ FV+
Sbjct: 175 -TIEVRGEIYMPKKSFAALNVQREADGLEPFANPRNAAAGSLRQLDAQVTKQRELSAFVY 233

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
              +   +    Q   L +   LG P +   +       I  +     + R TL Y IDG
Sbjct: 234 YTAEPEVLGVTTQSGALARFAELGLPTDTHNQVIEKMADIADFIATYTAKRDTLAYGIDG 293

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KV+    Q +LG   + PRW I++KF  ++A T + DI+  +GRTG +TP A ++PV
Sbjct: 294 VVVKVNALDNQVELGNTVKIPRWAIAYKFPPEEALTVVRDIEWTVGRTGAVTPTAIMDPV 353

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            + G  +  A+LHN DY++            +DIR+GD V + +AG++IP+V  +I+++R
Sbjct: 354 QLAGTTVQRASLHNPDYLQ-----------QKDIRIGDTVTLHKAGDIIPEVGQVILSQR 402

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNP 447
             D+  +  P  CP C S +V     
Sbjct: 403 PADSIAYPIPVACPACGSELVHISGE 428


>gi|154488672|ref|ZP_02029521.1| hypothetical protein BIFADO_01979 [Bifidobacterium adolescentis
           L2-32]
 gi|154082809|gb|EDN81854.1| hypothetical protein BIFADO_01979 [Bifidobacterium adolescentis
           L2-32]
          Length = 890

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 161/510 (31%), Positives = 261/510 (51%), Gaps = 35/510 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + ++S E A +  + +   +      YY    P+  D+ YDA  R   ++   FP L 
Sbjct: 59  VDVASMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQSLEAQFPSL- 117

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             + P  P +++GG  +     V H    +SL+ +++IE+LR++   + R     +   +
Sbjct: 118 --DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELREWYDGVLRGLDWPESKPL 175

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I TIP+       +IPE
Sbjct: 176 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEEDIPE 235

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E+RGEV++  +DF  LN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 236 FVEIRGEVFMRWDDFNKLNAENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 295

Query: 243 LGKTSE---------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           +G                  Q E  +  +  G PV+   R+  +F  I+   +     R 
Sbjct: 296 IGSLRWGAGHAGNGHDVVNDQSEAYELYKKWGVPVSPHNREVTSFKEILDMIDYYGEHRG 355

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +T
Sbjct: 356 DIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVT 415

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L+PV + G+ ++  TLHN   ++            + + +GD V+V++AG+VIP++
Sbjct: 416 PVAVLKPVYVAGSTVSRTTLHNPFEVER-----------KGVLIGDTVVVRKAGDVIPEL 464

Query: 414 VDIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           V  ++  R       + F  P+ CP C + +         +     RC    +C AQ  E
Sbjct: 465 VGPVLERRKGREGQIRRFVMPTRCPSCGAELA-----PAKEGDKDIRCPNVESCPAQLTE 519

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           R+ +  SR AF+IE LG Q        E+ 
Sbjct: 520 RIINLASRKAFDIEHLGDQSAIALTNPEED 549



 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 15/194 (7%)

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
              +   + D ++K R+  L R + +L IR +G   AR++A  + +              
Sbjct: 702 PAENTRKMLDEMDKARHADLWRVLVALSIRRLGPPTARTIASAFGTLDAIEHA------- 754

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFY---QNPRNI--CAVEALLKEVSPSIGRHEKNVSS 645
                  L ++  +G  IA+++V ++   + P N     ++A               +  
Sbjct: 755 ---SVDELSQIDGIGPEIAESVVTWFTAAREPGNWRGAVLDAWKAAGVGVGQAQASGLPQ 811

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +  K +V TG+L+   R  A+E +   G   +  +S+KTD ++VG+N GSK  KA++LG
Sbjct: 812 TLAGKTVVVTGSLEGFSRDSAKEAIVLRGGKAAGSVSKKTDWVVVGENAGSKAAKAEELG 871

Query: 706 VKIMNEEQFLFLLQ 719
           + ++NE+QF  LL 
Sbjct: 872 IPMLNEDQFKQLLD 885


>gi|119025970|ref|YP_909815.1| LigA [Bifidobacterium adolescentis ATCC 15703]
 gi|166215398|sp|A1A200|DNLJ_BIFAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118765554|dbj|BAF39733.1| LigA [Bifidobacterium adolescentis ATCC 15703]
          Length = 892

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 161/510 (31%), Positives = 261/510 (51%), Gaps = 35/510 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + ++S E A +  + +   +      YY    P+  D+ YDA  R   ++   FP L 
Sbjct: 61  VDVASMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQSLEAQFPSL- 119

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             + P  P +++GG  +     V H    +SL+ +++IE+LR++   + R     +   +
Sbjct: 120 --DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELREWYDGVLRGLDWPESKPL 177

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I TIP+       +IPE
Sbjct: 178 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEEDIPE 237

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E+RGEV++  +DF  LN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 238 FVEIRGEVFMRWDDFNKLNAENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 297

Query: 243 LGKTSE---------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           +G                  Q E  +  +  G PV+   R+  +F  I+   +     R 
Sbjct: 298 IGSLRWGAGHAGNGHDVVNDQSEAYELYKKWGVPVSPHNREVTSFKEILDMIDYYGEHRG 357

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +T
Sbjct: 358 DIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVT 417

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L+PV + G+ ++  TLHN   ++            + + +GD V+V++AG+VIP++
Sbjct: 418 PVAVLKPVYVAGSTVSRTTLHNPFEVER-----------KGVLIGDTVVVRKAGDVIPEL 466

Query: 414 VDIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           V  ++  R       + F  P+ CP C + +         +     RC    +C AQ  E
Sbjct: 467 VGPVLERRKGREGELRRFVMPTRCPSCGAELA-----PAKEGDKDIRCPNVESCPAQLTE 521

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           R+ +  SR AF+IE LG Q        E+ 
Sbjct: 522 RIINLASRKAFDIEHLGDQSAIALTNPEED 551



 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 15/194 (7%)

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
              +   + D ++K R+  L R + +L IR +G   AR++A  + +              
Sbjct: 704 PAENTRKMLDEMDKARHADLWRVLVALSIRRLGPPTARTIASAFGTLDAIEHA------- 756

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFY---QNPRNI--CAVEALLKEVSPSIGRHEKNVSS 645
                  L ++  +G  IA+++V ++   + P N     ++A               +  
Sbjct: 757 ---SVDELSQIDGIGSEIAESVVTWFTAAREPGNWRGAVLDAWKAAGVGVGQAQASGLPQ 813

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +  K +V TG+L+   R  A+E +   G   +  +S+KTD ++VG+N GSK  KA++LG
Sbjct: 814 TLAGKTVVVTGSLEGFSRDSAKEAIVLRGGKAAGSVSKKTDWVVVGENAGSKAAKAEELG 873

Query: 706 VKIMNEEQFLFLLQ 719
           + ++NE+QF  LL 
Sbjct: 874 IPMLNEDQFKQLLD 887


>gi|207723346|ref|YP_002253745.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) (partial
           sequence n terminus) protein [Ralstonia solanacearum
           MolK2]
 gi|206588545|emb|CAQ35508.1| probable dna ligase (polydeoxyribonucleotide synthase [nad+])
           (partial sequence n terminus) protein [Ralstonia
           solanacearum MolK2]
          Length = 568

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 199/564 (35%), Positives = 295/564 (52%), Gaps = 51/564 (9%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           + +   YY   +P + D+EYD L R  +A+    P+L     P+ P  ++GG +      
Sbjct: 25  NRYAHEYYVLDQPSVPDAEYDRLYRALEALEAEHPEL---RTPDSPTLRVGGAVLPEFAP 81

Query: 89  VTHSIPTLSLEKIWNI--EDLRKFITRIYRFWQKKD-DNSIFFTLEPKIDGTMITIRYEK 145
           V H +P LS+    +   +    F   + R     + D  + +  E K DG  I +RYE+
Sbjct: 82  VRHVVPMLSIRTETDTTADGALAFDASVRRELGLAESDPPVEYAAELKFDGLAINLRYEQ 141

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLALN 202
           G  V AA RGDG +GEDV+  IR I  IP   R +   +P+++EVRGEVY+ ++DF  LN
Sbjct: 142 GFLVQAATRGDGATGEDVTQNIRTIRQIPLGLRPVDGAVPDVLEVRGEVYMRRDDFERLN 201

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGK--TSEIFAKGQYEMLQ 259
                 G K + NPRN A+G +R+L+P        +FF +GLG+        +    ML 
Sbjct: 202 ARQRERGEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSGMPETHSGMLD 261

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
            +  LGFPV+          G+V ++  + + R +LP+DIDG+VYKV+  +LQ++LG R 
Sbjct: 262 ALVALGFPVSKERAAVMGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNALALQRELGFRT 321

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           R PRW ++HK+  ++A T +  I +Q+GRTG +TPVARL PV +GG  +TNATLHNED +
Sbjct: 322 REPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEV 381

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER---------------HPD 424
           +            +D+RVGD V+V+RAG+VIP+VV +++  R                P 
Sbjct: 382 RR-----------KDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNPVQQPK 430

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           + PF  P  CP+C S VVR+         A  RC+GGL CSAQ+ E ++HF  R   +IE
Sbjct: 431 SPPFELPKSCPVCGSHVVREEGE------AVARCSGGLFCSAQRKEAIRHFAGRRMMDIE 484

Query: 485 GLGKQQLDFFFKSEDPAF---SIRIPADIFTLQRRQQTSTTKIENILG----FGDVSVTN 537
           GLG++ +D   + E         R+  D F   +R+      +                N
Sbjct: 485 GLGERYIDNLVELEYVHGIADLYRLTLDAFLEMKRRADERDGVTPETVAAGKIATKWAEN 544

Query: 538 LYDSINKRRNISLERFIFSLGIRH 561
           L   I   +   L RF+F+LGIR 
Sbjct: 545 LLAGIQASKTPPLARFLFALGIRP 568


>gi|309800924|ref|ZP_07695056.1| DNA ligase (NAD+) [Bifidobacterium dentium JCVIHMP022]
 gi|308222460|gb|EFO78740.1| DNA ligase (NAD+) [Bifidobacterium dentium JCVIHMP022]
          Length = 885

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 166/509 (32%), Positives = 258/509 (50%), Gaps = 34/509 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + +LS E A +  + +   +      YY    PI  D+ YDA  R   A+   FP L 
Sbjct: 61  LDVSSLSAEAAARLWAKVAAWVESDQIAYYIDDAPISSDAAYDARLRCLQALESQFPPL- 119

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             + P  P +++GG  +     V H    +SL+ +++IE+LR +   + R     +   +
Sbjct: 120 --DTPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVIRDLDWPESKPL 177

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I TIP+       +IPE
Sbjct: 178 PMTCEVKIDGLALNLVYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEDDIPE 237

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E+RGEV++  +DF ALN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 238 FVEIRGEVFMRWDDFAALNGENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 297

Query: 243 LGKTSE--------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           +G                 Q E        G PV+   R+  +F  I+   +     R  
Sbjct: 298 IGSLRWGAGRADRHDVINHQSEAYALYEKWGVPVSPHNREVTSFTDILDMIDYYGEHRGD 357

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +TP
Sbjct: 358 IEHALDGIVVKVDDLGLQRALGATSRAPRWAIAYKYPPEEVNTDLLDITVQVGRTGRVTP 417

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ ++  TLHN   ++            + + +GD V+V++AG+VIP++V
Sbjct: 418 VAILKPVYVAGSTVSRTTLHNPFEVER-----------KGVLIGDTVVVRKAGDVIPELV 466

Query: 415 DIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R         F  P+ CP C + +         K     RC    +C AQ  ER
Sbjct: 467 GPVLERRKGREESLHAFVMPTHCPSCGAELA-----PAKKGDKDIRCPNVESCPAQLTER 521

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           + +  SR AF+IE LG Q        E+ 
Sbjct: 522 IINLASRKAFDIEHLGDQSAIALTNPEED 550



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 86/199 (43%), Gaps = 28/199 (14%)

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
           + +      +   + D + K R++ L R + +L IR +G   AR++A  + S        
Sbjct: 705 QPVYVRPAENTRKMLDEMEKARHVDLWRVLVALSIRRLGPPTARTIATAFGSLDAIEHA- 763

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QNPRNIC--AVEALLKEVSPSIGRH 639
                        L  +  +G  IA+++V ++     P N     ++A        +   
Sbjct: 764 ---------SVEELSAIDGIGPEIAESVVTWFTAAHEPGNWRGTVLDAWKTAGVGVVAET 814

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
             ++   +  K +V TG+L                A     LSRKTD ++VG+N GSK  
Sbjct: 815 N-DLPQTLAGKTVVVTGSLVDFS------------ATPPRSLSRKTDWVVVGENAGSKAA 861

Query: 700 KAQQLGVKIMNEEQFLFLL 718
           KA++LG+ ++NE+QF  LL
Sbjct: 862 KAEELGIPMLNEDQFKQLL 880


>gi|306822599|ref|ZP_07455977.1| NAD-dependent DNA ligase LigA [Bifidobacterium dentium ATCC 27679]
 gi|304554144|gb|EFM42053.1| NAD-dependent DNA ligase LigA [Bifidobacterium dentium ATCC 27679]
          Length = 897

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 166/509 (32%), Positives = 258/509 (50%), Gaps = 34/509 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + +LS E A +  + +   +      YY    PI  D+ YDA  R   A+   FP L 
Sbjct: 61  LDVSSLSAEAAARLWAKVAAWVESDQIAYYIDDAPISSDAAYDARLRCLQALESQFPPL- 119

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             + P  P +++GG  +     V H    +SL+ +++IE+LR +   + R     +   +
Sbjct: 120 --DTPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVIRDLDWPESKPL 177

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I TIP+       +IPE
Sbjct: 178 PMTCEVKIDGLALNLVYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEDDIPE 237

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E+RGEV++  +DF ALN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 238 FVEIRGEVFMRWDDFAALNGENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 297

Query: 243 LGKTSE--------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           +G                 Q E        G PV+   R+  +F  I+   +     R  
Sbjct: 298 IGSLRWGAGRADRHDVINHQSEAYALYEKWGVPVSPHNREVTSFTDILDMIDYYGEHRGD 357

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +TP
Sbjct: 358 IEHALDGIVVKVDDLGLQRALGATSRAPRWAIAYKYPPEEVNTDLLDITVQVGRTGRVTP 417

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ ++  TLHN   ++            + + +GD V+V++AG+VIP++V
Sbjct: 418 VAILKPVYVAGSTVSRTTLHNPFEVER-----------KGVLIGDTVVVRKAGDVIPELV 466

Query: 415 DIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R         F  P+ CP C + +         K     RC    +C AQ  ER
Sbjct: 467 GPVLERRKGREESLHAFVMPTHCPSCGAELA-----PAKKGDKDIRCPNVESCPAQLTER 521

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           + +  SR AF+IE LG Q        E+ 
Sbjct: 522 IINLASRKAFDIEHLGDQSAIALTNPEED 550



 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 16/199 (8%)

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
           + +      +   + D + K R++ L R + +L IR +G   AR++A  + S        
Sbjct: 705 QPVYVRPAENTRKMLDEMEKARHVDLWRVLVALSIRRLGPPTARTIATAFGSLDAIEHA- 763

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QNPRNIC--AVEALLKEVSPSIGRH 639
                        L  +  +G  IA+++V ++     P N     ++A        +   
Sbjct: 764 ---------SVEELSAIDGIGPEIAESVVTWFTAAHEPGNWRGTVLDAWKTAGVGVVAET 814

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
             ++   +  K +V TG+L    R  A+E +   G   +  +SRKTD ++VG+N GSK  
Sbjct: 815 N-DLPQTLAGKTVVVTGSLVDFSRDSAKEAIISHGGKAAGSVSRKTDWVVVGENAGSKAA 873

Query: 700 KAQQLGVKIMNEEQFLFLL 718
           KA++LG+ ++NE+QF  LL
Sbjct: 874 KAEELGIPMLNEDQFKQLL 892


>gi|4235372|gb|AAD13189.1| NAD-dependent DNA ligase [Thermus aquaticus]
          Length = 527

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 185/573 (32%), Positives = 303/573 (52%), Gaps = 49/573 (8%)

Query: 63  PDLARSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           P+L     P+ P  ++G     S    V H     SL+  ++++++R F  RI R   +K
Sbjct: 1   PELK---SPDSPTEQVGARPLESTFRPVRHPTRMYSLDNAFSLDEVRAFEERIERALGRK 57

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
                 +T+E K+DG  + + YE+G  V+ A RGDG +GE+V+  +  I TIPR L+   
Sbjct: 58  --GPFLYTVEHKVDGLSVNLYYEEGILVFGATRGDGETGEEVTQNLLTIRTIPRRLTGV- 114

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240
           P+ +EVRGEVY+    FL LN E+   G + + NPRNAA+G LR+ +P     R L    
Sbjct: 115 PDRLEVRGEVYMPIEAFLRLNQELEEAGERIFKNPRNAAAGSLRQKDPRVTARRGLRATF 174

Query: 241 HGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
           + LG   E    K Q+++L  ++  GFPV +G  +A    G+   Y      R  LP++ 
Sbjct: 175 YALGLGLEETGLKSQHDLLLWLKERGFPVEHGFTRALGAEGVEEVYQAWLKERRKLPFEA 234

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V K+D+ +L ++LG  AR+PR+ +++KF  ++  TRLL +  Q+GRTG +TPV  LE
Sbjct: 235 DGVVVKLDDLALWRELGYTARAPRFALAYKFPAEEKETRLLSVAFQVGRTGRITPVGVLE 294

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV I G+ ++  TLHNE +I+ L           D+R+GD VLV +AG VIP+V+ ++  
Sbjct: 295 PVFIEGSEVSRVTLHNESFIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKE 343

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R  + +P  +P  CP C   ++++           HRC   L C A++ E ++H+ SR 
Sbjct: 344 RRTGEEKPILWPENCPECGHALLKE--------GKVHRCPNPL-CPAKRFEAIRHYASRK 394

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
           A +I+GLG++ ++   +       +R  AD++ L++        + ++   G+ S  NL 
Sbjct: 395 AMDIQGLGEKLIEKLLEK----GLVRDVADLYRLRKED------LLDLERMGEKSAENLL 444

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
             I + +   LER +++LG+  VG  +AR+LA  +       +               L+
Sbjct: 445 RQIEESKGRGLERLLYALGLPGVGEVLARNLALRFGHMDRLLEAGLG----------DLL 494

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
            V  VG++ A+AI+   ++P     V  L +  
Sbjct: 495 EVEGVGELTARAILNTLKDPEFRDLVRRLKEAG 527


>gi|257458169|ref|ZP_05623323.1| DNA ligase, NAD-dependent [Treponema vincentii ATCC 35580]
 gi|257444463|gb|EEV19552.1| DNA ligase, NAD-dependent [Treponema vincentii ATCC 35580]
          Length = 641

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 162/715 (22%), Positives = 283/715 (39%), Gaps = 95/715 (13%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
            +  LE  I  H + YY  ++P I D+++D L     ++     +L  +   +       
Sbjct: 6   RIQELEALIKKHQNLYYN-AEPEISDADFDMLWDELRSLDPQN-ELFATVPKDS------ 57

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                   K  H IP  S EK  + E  +K+  ++             F ++ K+DG  +
Sbjct: 58  ---ADGFPKAEHIIPMGSQEKAADPESFQKWAEKM---------PFTEFLVQYKLDGASM 105

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE------VRGEVYI 193
            ++YEKG+ + A  RGDG  G+D++A ++ +  +   L  +            VRGEV +
Sbjct: 106 ELQYEKGRLIRAVTRGDGKIGDDITANVKKMQGVVLELKGDSAPTGAAPFSGGVRGEVLM 165

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV------HGLGKTS 247
           +K                   N RNAA+G+++R + +                 G   T 
Sbjct: 166 TKEVLHRFY--------PDKKNCRNAANGLMKRKDGSGSEHLEIICYDAAAGTIGHPFTE 217

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                 + E L  ++  GF      R   +   ++ Y   +  IRST+PYDIDGLV K D
Sbjct: 218 PAPFTTETEKLNWLKTQGFLQVPVTR-CGSVREVIDYRAHIMDIRSTIPYDIDGLVIKND 276

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
              +          P   I+ KF+ ++A T L  ++         TP+A ++PV + G  
Sbjct: 277 LIDIADL---SRARPEKQIAFKFSLEEAITALRSVEWSESGVT-YTPIALIDPVQLAGTT 332

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A L N + I  L           ++++G RVLV + GE+IPK+  +I N     A+P
Sbjct: 333 VKRANLCNPNMIAEL-----------NLKIGSRVLVTKRGEIIPKIEALIENP--ASAKP 379

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              PS C  C + +  +                  AC      R++ ++  D  +I+  G
Sbjct: 380 IEQPSRCTSCGTVLRDEG---------TRLYCPNPACPKLIHHRIEKWI--DTLDIQDFG 428

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
              +   F ++     IR  +D++TL   +  +          G  S   +Y +++ +R 
Sbjct: 429 TTLIKRLFDTQR----IRSVSDLYTLTVEELAAF------ERMGQKSAEKVYRALHAKRE 478

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           I L  F+    I  +G  +   L    + + +                      V   G 
Sbjct: 479 IPLPVFVAGFDIEGIGRTMMEKLVDAGFDTLEKLLAASE----------EDFAAVYQFGS 528

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHK 665
           ++A  +    +       +  L       I        +  +  K   FTG L  ++R +
Sbjct: 529 VLAHTLTAGLRE--VKDEMLRLTGSGIIVIQPPVSAQENLPLAGKSFCFTGELNSLKRKE 586

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           A+  V Q G  V + +++    ++    D+  SK +KAQ+LG  I+ EE+FL LL
Sbjct: 587 AEAMVQQKGGTVKSSVTKGLTYLVTNTPDSGSSKNKKAQELGTVIITEEEFLKLL 641


>gi|219882959|ref|YP_002478123.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6]
 gi|254778150|sp|B8HIQ9|DNLJ2_ARTCA RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|219861965|gb|ACL42306.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6]
          Length = 701

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 170/726 (23%), Positives = 302/726 (41%), Gaps = 87/726 (11%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF---PDLARSEDPNGP 74
            +E  +           Y       + D+E+D L  +  +   A    P+    +     
Sbjct: 37  EEEYQAAVTTALSAAKAYETTDVEEMNDAEFDRLLAKIASHEAANGIEPEHDLHDTI--- 93

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
                G        V H+ P  SLEK    + + +F  +  +             +EPKI
Sbjct: 94  -----GHGGAGGGDVEHATPMKSLEKP-GEDAVIEFAAKHPKA-----------VIEPKI 136

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  I++RYE GK V AA RGDG++GEDV+  +R +  +P +         EVRGE+Y++
Sbjct: 137 DGLAISVRYENGKMVRAARRGDGYTGEDVTDRVRGVDGLPEMAGD---GDYEVRGELYLN 193

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
             +    N    A G+ P+AN RN  +G+L + + +    +  F  +    T+       
Sbjct: 194 DENKAKANAIRQAAGKAPFANARNGVAGMLNKQDGSYAGLFS-FAAYS---TTIDEKADH 249

Query: 255 YEMLQKMRCLGFPVNNG--VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            + +Q++  +GF        +        ++    + + R  L + +DG V KV+  + +
Sbjct: 250 LDSMQQLEGMGFTTARSLLPQSVLDAEDPMAAIAALGAERKGLNFLMDGAVLKVNTAAER 309

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
            +LGE +R+P+W +++K+   +  T + DI+  IG+TG L+  ARL PV + G+++  A+
Sbjct: 310 AELGEGSRAPKWAVAYKYPAVEEPTVIEDIEYNIGKTGRLSIRARLTPVEVDGSVVEYAS 369

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN  +++             D+R+GD V   +A ++IP+V     + R   +QP+  PS
Sbjct: 370 LHNVGHLQ-----------AADMRIGDTVSAYKANDIIPQVHLPRADLRDESSQPWQPPS 418

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C        +    K     RC       + ++            +IEGLG    D
Sbjct: 419 VCPQC--------SEPFDKSTELWRCHTPECSVSGRISYA--ASRDAGLDIEGLGGSIGD 468

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG----DVSVTNLYDSINKRRNI 548
              + +     ++  +D+F L   Q       E   G        +   +   I K ++ 
Sbjct: 469 ALIEKD----LVKDVSDLFYLGEDQLAEVELGETSTGGTRTLGQKNAAKIMAEIEKAKSQ 524

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L R I +L +R  G    R LA  + + +                   L  V  +G   
Sbjct: 525 PLNRVITALSMRFTGRTFGRRLAAEFGTMEALQAAT----------VSQLANVEGIGQKK 574

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-------SEIENK--KLVFTGT-- 657
           A+ I E  Q  +N   +  L +             +       ++ + K   +V TG+  
Sbjct: 575 AEVIHE--QLKKNAPVIAKLREAGVNMGAPKAAPAAGAKAPKLTKPDGKPMNVVVTGSVK 632

Query: 658 ---LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
              L  + R   QE +   G   S  +S+ TD+++ G+   SK  KAQ+LG++I+  ++F
Sbjct: 633 GSPLGSLSRSGVQELIEAKGGKASGSVSKTTDLLVCGEPGSSKFLKAQELGIRIVTPDEF 692

Query: 715 LFLLQQ 720
             +++ 
Sbjct: 693 AQMVED 698


>gi|154507531|ref|ZP_02043173.1| hypothetical protein ACTODO_00010 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799320|gb|EDN81740.1| hypothetical protein ACTODO_00010 [Actinomyces odontolyticus ATCC
           17982]
          Length = 777

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 162/500 (32%), Positives = 257/500 (51%), Gaps = 27/500 (5%)

Query: 6   LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
           + P+   + E  R   + L   I+     YY    P + D++YD + R  + I   +P L
Sbjct: 1   MDPMADSTFETTRDRYNDLVDRINEARAAYYDRDSPTLADADYDRMYREVEEIEERYPQL 60

Query: 66  ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
             +   + P   +GG ++    +V H    +SL+ ++++E+L  + TR+       D   
Sbjct: 61  RGA---DSPTMSVGGSVDSGFSEVRHLAQMMSLDDVFSLEELAGWETRMAEATGISD--- 114

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           +  T E K+DG  I + YE G+ V AA RGDG+ GEDV+A  R I +IP+ LS  +P  I
Sbjct: 115 LEMTTEVKVDGLSINLLYENGRLVRAATRGDGYVGEDVTANARTIASIPQTLSGTVPTRI 174

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG 244
           EVRGEVY    DF A N+  +  G K + N RNAA+G LR+ +P +   R L    HG+G
Sbjct: 175 EVRGEVYFPVADFAAFNEARVEAGEKTFVNARNAAAGSLRQKDPAETAKRPLAMVAHGIG 234

Query: 245 KT----SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
                        Q    +++R  G PV+   R       I     E+   R  L ++ID
Sbjct: 235 FVEAGEDFTEPITQMGWYEQLRDWGLPVSPYTRVLTGRKAIEERIAELGEKRHDLEHEID 294

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K+++  LQ+ LG  +R+PRW  ++KF  ++  TRLLDI +Q+GRTG +TP   +E 
Sbjct: 295 GVVVKINDLDLQRSLGSTSRTPRWAAAYKFPPEEVHTRLLDIRVQVGRTGRVTPYGVMES 354

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V + G+ +  ATLHN   +             + + +GD V++++AG+VIP++V  + + 
Sbjct: 355 VLVAGSNVARATLHNAQEVAR-----------KGVLIGDLVVLRKAGDVIPEIVAPVEDA 403

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R+   +PF  P+ CP C + +V++      +     RC     C AQ  ERL H  +R A
Sbjct: 404 RNGSERPFVMPTECPSCGTTLVQE-----KEGDVDLRCPNKGLCPAQITERLAHVGARSA 458

Query: 481 FNIEGLGKQQLDFFFKSEDP 500
            ++EGLG +      + E+ 
Sbjct: 459 LDVEGLGDESALAMTQPEND 478



 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 10/204 (4%)

Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575
           R+    T  E I          +   + K ++  L R + +L IRHVG   AR+LA+ +L
Sbjct: 576 RKLRGQTVFEPIEPTASKGTEKMLVELEKAKSQPLARVLVALSIRHVGPTAARALAEKFL 635

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635
           S                     L  V  VG+ I +++ +++    ++  ++A  +     
Sbjct: 636 SMDALRAA----------SVEELSAVEGVGEEIGRSLRDWFTVDWHLEVLQAWARAGVRM 685

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
                +  S  +    +V +G +    R  A+E +T  G      +S+KT +++ G   G
Sbjct: 686 ADEAPEPTSDVLAGLTVVVSGAMPGYDREGAKEAITSRGGKAVGSVSKKTSLVVAGPGAG 745

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SK  KA+ LGV ++ E+QF  LL+
Sbjct: 746 SKAAKAEALGVPVITEQQFTDLLE 769


>gi|254673676|emb|CBA09270.1| DNA ligase [Neisseria meningitidis alpha275]
          Length = 423

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 154/410 (37%), Positives = 230/410 (56%), Gaps = 30/410 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A + +  L   ++ +   YY    P + D+EYD L R  +A+    P+L     P+ P  
Sbjct: 26  AAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQ 82

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIE---------DLRKFITRIYRFWQKKDDNSIF 127
           ++GGE      +V H +P LSL   ++ +         ++  F  R+       D  +  
Sbjct: 83  RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGL---DGGNPE 139

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIE 186
           + +EPK DG  I++ Y  G  + AA RGDG +GEDV+  I+ +  IP  L     PE+IE
Sbjct: 140 YVIEPKFDGLAISLLYRDGVLIQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIE 199

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245
           VRGEV + K DF ALN      G+KP+ANPRNAA+G LR+L+      R L+FF + + +
Sbjct: 200 VRGEVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVAR 259

Query: 246 TS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTF-HGIVSYYNEMKSIRSTLPYDIDGLV 303
                 A+   + L   + LGF + NG          ++++Y  M+  R  LPY+IDG+V
Sbjct: 260 QQGGFVAEEHIQELAYFQALGFSLPNGNFGCFKNIDEVLAFYGHMQQKRPELPYEIDGMV 319

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+  + Q +LG  +R+PRW ++HKF  ++A T +  ID+QIGRTG +TPVARL+PV +
Sbjct: 320 VKVNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFV 379

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           GG  +TNATLHN+D +             +D+RVGD V+V+RAG+VIP+V
Sbjct: 380 GGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEV 418


>gi|311747945|ref|ZP_07721730.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1]
 gi|126574918|gb|EAZ79276.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1]
          Length = 791

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 165/563 (29%), Positives = 269/563 (47%), Gaps = 28/563 (4%)

Query: 38  YSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLS 97
             + +I D E+D L      +   FPDL +   P+ P  ++GG +      V H+   LS
Sbjct: 2   EDQAVISDFEFDKLLEELVQLETEFPDLLQ---PDSPSQRVGGTITKEFETVVHAYKMLS 58

Query: 98  LEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157
           L   ++ E+L  F  R+ +       N   +  E K DG  I++ YE GK V A  RGDG
Sbjct: 59  LGNTYSKEELIAFDERVQKGLG---GNPYEYFCEMKFDGVAISLVYENGKLVRAVTRGDG 115

Query: 158 HSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANP 216
             G+DV+A +R I  IP  +  + IPE  EVRGE+++   +F  +N E    G    ANP
Sbjct: 116 TRGDDVTANVRTIRNIPLYVKGDKIPERFEVRGEIFLPHREFEKINAERNENGEALMANP 175

Query: 217 RNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQAN 276
           RNAASG L+  + + + +             +I      E +  +   GF V+   R+ N
Sbjct: 176 RNAASGTLKMQDSSVVAKRRLNCYFYQLLGEDIGVNAHDEAISLIESWGFNVSPTYRKTN 235

Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336
           T   +++Y  + +  R TLP D DG+V K++++  +++LG  A++PRW I++K+  + + 
Sbjct: 236 TIEDVLTYIEDWREKRFTLPLDTDGVVLKINDYEQREELGFTAKNPRWAIAYKYKAESSE 295

Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396
           T LL +  Q+GRTG +TPVA L PV++ G  +  A+LHN + I+ L            + 
Sbjct: 296 TELLSVTYQVGRTGAITPVANLAPVSLAGTTVKRASLHNANEIERL-----------GLH 344

Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456
            GD V V++ GE+IPK+  + + +R PD++P  + S CP C + + R          A H
Sbjct: 345 TGDVVFVEKGGEIIPKITGVSLEQRKPDSKPIEYISECPECGTPLERKEGE------AKH 398

Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516
            C     C  Q L R++HFV + A +I+ LG +++            I+ PADI+ L+ +
Sbjct: 399 FCPNASNCPPQVLGRIEHFVHKRAMDIDSLGTERIRALIDQ----GFIQNPADIYDLESK 454

Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
           Q        +   +       L+  + K      E+  F      + A     L +   +
Sbjct: 455 QSDLLGLEMSQDQYELEGTGLLFVKLEKALFALTEQISFKQISDWLAANTELPLFEKLKA 514

Query: 577 YQNFAQEINNIIAHNNDDWLSLI 599
           +Q   ++    +  N      LI
Sbjct: 515 FQEQIRKWKKKVPANTGMVDYLI 537



 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 114/244 (46%), Gaps = 14/244 (5%)

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ-TSTTKIENILGFGDVSVTNLY 539
             I    + Q +   ++     ++        L+  Q+     K      F +  ++N+ 
Sbjct: 558 LEIFLGRRIQFEAILEASKRHGTVHRILLDLDLELSQELRERIKKLKANTFQEGVISNMM 617

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           + I   +    E+ +F+LG+R++G   A  LA+++ S     +               L+
Sbjct: 618 EGIAASKKQPFEKVLFALGVRNIGENTAALLAQHFGSIDKLNEA----------STEELL 667

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGT 657
            +  VG+ + Q+I EF+    N+  +  L K          + VS  + +E KK++ +G 
Sbjct: 668 EINGVGETLVQSIHEFFSRQENLDIISRLKKSGLQFDAEQIETVSLGNALEGKKILASGK 727

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716
           L + +R +  +++   G    + +S+K D II G++ G SK EKAQ+LG+ +++EE FL 
Sbjct: 728 LNQFKRDEIVDFIKSHGGQYVSSVSKKLDFIIEGEDMGPSKKEKAQKLGIPLISEEDFLK 787

Query: 717 LLQQ 720
           +L++
Sbjct: 788 MLEE 791


>gi|224282769|ref|ZP_03646091.1| LigA [Bifidobacterium bifidum NCIMB 41171]
 gi|313139930|ref|ZP_07802123.1| LigA [Bifidobacterium bifidum NCIMB 41171]
 gi|313132440|gb|EFR50057.1| LigA [Bifidobacterium bifidum NCIMB 41171]
          Length = 900

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 167/509 (32%), Positives = 258/509 (50%), Gaps = 35/509 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + +LS E A +  + +   +      YY    P+  D+ YDA  R    +   FP L 
Sbjct: 62  LDVSSLSNEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQRLEAEFPSL- 120

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             + P  P +++GG  +     V H    +SL+ +++IE+LR +   + R     +   +
Sbjct: 121 --DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVLRDLDWPEGKPL 178

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L      IPE
Sbjct: 179 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPAADIPE 238

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E+RGEV++  +DF ALN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 239 FVEIRGEVFMRWDDFKALNGEQEDAGRPPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 298

Query: 243 LGKTSE---------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           +G                  Q E        G PV+   R+  +F  I+   +     R 
Sbjct: 299 IGTLRWGSGRPAGSHDVVADQSEAYTLYSKWGVPVSPHNREVTSFAQILDMIDYYGEHRG 358

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +T
Sbjct: 359 DIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVT 418

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L+PV + G+ ++  TLHN   +K            + + +GD V+V++AG+VIP++
Sbjct: 419 PVAVLKPVYVAGSTVSRTTLHNPFEVKR-----------KGVLIGDTVVVRKAGDVIPEL 467

Query: 414 VDIIVNERHP---DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           V  +V  R     D + F  P  CP C S++         +     RC    +C AQ  E
Sbjct: 468 VGPVVERRKGREDDLREFVMPDRCPSCGSKLA-----PAKEGDKDIRCPNVESCPAQLTE 522

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           R+ +  SR AF+IE LG Q        E+
Sbjct: 523 RIINLASRKAFDIEHLGDQSAIALTNPEE 551



 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 96/214 (44%), Gaps = 15/214 (7%)

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
             + R+   + T    +      +   ++D ++K R+  L R + +L IR +G   AR +
Sbjct: 692 VRVDRKTTRNGTVDVPVYVRPGENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLI 751

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-----CAV 625
           A  + S +   Q               L  +  +G  IA+++V ++   R         +
Sbjct: 752 ASAFGSLEAIEQA----------GVDELSAIDGIGPEIAESVVNWFAAAREPRDWRGETL 801

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
            A               +   +  K +V TG+L+   R  A+E + + G   +  +S+KT
Sbjct: 802 RAWQAAGVGVAAAETSTLPQTLAGKTVVVTGSLEGFSRDSAKEAIIERGGKAAGSVSKKT 861

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           D ++VG+N GSK  KA++LG+ +++E QF  LL+
Sbjct: 862 DWVVVGENAGSKAAKAEELGIPMLDEAQFRTLLE 895


>gi|311064086|ref|YP_003970811.1| NAD-dependent DNA ligase [Bifidobacterium bifidum PRL2010]
 gi|310866405|gb|ADP35774.1| LigA NAD-dependent DNA ligase [Bifidobacterium bifidum PRL2010]
          Length = 896

 Score =  314 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 166/509 (32%), Positives = 258/509 (50%), Gaps = 35/509 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + +LS E A +  + +   +      YY    P+  D+ YDA  R    +   FP L 
Sbjct: 62  LDVSSLSNEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQRLEAEFPSL- 120

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             + P  P +++GG  +     V H    +SL+ +++IE+LR +   + R     +   +
Sbjct: 121 --DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVLRDLDWPEGKPL 178

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L      IPE
Sbjct: 179 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPAADIPE 238

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E+RGEV++  +DF ALN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 239 FVEIRGEVFMRWDDFKALNGEQEDAGRPPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 298

Query: 243 LGKTSE---------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           +G                  Q E        G PV+   R+  +F  I+   +     R 
Sbjct: 299 IGTLRWGSGRPAGSHDVVADQSEAYTLYSKWGVPVSPHNREVTSFAQILDMIDYYGEHRG 358

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLD+ +Q+GRTG +T
Sbjct: 359 DIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDVTVQVGRTGRVT 418

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L+PV + G+ ++  TLHN   +K            + + +GD V+V++AG+VIP++
Sbjct: 419 PVAVLKPVYVAGSTVSRTTLHNPFEVKR-----------KGVLIGDTVVVRKAGDVIPEL 467

Query: 414 VDIIVNERHP---DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           V  +V  R     D + F  P  CP C S++         +     RC    +C AQ  E
Sbjct: 468 VGPVVERRKGREDDLREFVMPDRCPSCGSKLA-----PAKEGDKDIRCPNVESCPAQLTE 522

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           R+ +  SR AF+IE LG Q        E+
Sbjct: 523 RIINLASRKAFDIEHLGDQSAIALTNPEE 551



 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 112/281 (39%), Gaps = 15/281 (5%)

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
           +++          R    +  S    +    + +          +Q          P + 
Sbjct: 621 EIHETVTADGKTKRTRKRIGGSGLWHQVPAFWTAPTPAKKLSARRQAAADAAAEPYPGYD 680

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           +   A +  + R+   + T    +      +   ++D ++K R+  L R + +L IR +G
Sbjct: 681 VPADAVVVRVDRKTTRNGTVDVPVYVRPGENTRKMFDEMDKARHADLWRVLVALSIRRLG 740

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI- 622
              AR +A  + S +   Q               L  +  +G  IA+++V ++   R   
Sbjct: 741 PPTARLIASAFGSLEAIEQA----------GVDELSAIDGIGPEIAESVVNWFAAAREPR 790

Query: 623 ----CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
                 + A               +   +  K +V TG+L+   R  A+E + + G   +
Sbjct: 791 DWRGETLRAWQAAGVGVAAAETSTLPQTLAGKTVVVTGSLEGFSRDSAKEAIIERGGKAA 850

Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             +S+KTD ++VG+N GSK  KA++LG+ +++E QF  LL+
Sbjct: 851 GSVSKKTDWVVVGENAGSKAAKAEELGIPMLDEAQFRTLLE 891


>gi|229817979|ref|ZP_04448261.1| hypothetical protein BIFANG_03266 [Bifidobacterium angulatum DSM
           20098]
 gi|229784583|gb|EEP20697.1| hypothetical protein BIFANG_03266 [Bifidobacterium angulatum DSM
           20098]
          Length = 927

 Score =  314 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 159/507 (31%), Positives = 256/507 (50%), Gaps = 33/507 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + +  +  + A +  + L   +      YY    P+  D+ YDA  R    +  AFP L 
Sbjct: 70  LDVSGMEADTAARLWAKLAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQRLEAAFPTL- 128

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             ++P  P  ++GG  +     V H    +SL+ +++IE+L  +   + R     +   +
Sbjct: 129 --DNPQSPTRRVGGTFSNDFVSVRHPSRMMSLDDVFSIEELHDWYDGVLRGLDWPEGKPL 186

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPE 183
             + E KIDG  + + Y  G       RGDG +GED++  +R I TIP      + +IP+
Sbjct: 187 PMSCEVKIDGLALNLIYRHGVLEQGLTRGDGVTGEDITLNVRTIGTIPANLAGPTEDIPD 246

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E+RGEV++  +DF  LNDE    GR+P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 247 FVEIRGEVFMRWDDFRRLNDEQEDAGREPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 306

Query: 243 L-------GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           +       G         Q E  +     G PV+   R   +F  ++   +     R  +
Sbjct: 307 IGRLEWGAGHAGHDEINDQSEAYELYTKWGVPVSPHNRTVASFAEVLDMIDYYGEHRGDI 366

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            + +DG+V KVD+ +LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +TPV
Sbjct: 367 EHALDGIVVKVDDLALQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVTPV 426

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A L+PV++ G+ +   TLHN   +K            + I +GD V+V++AG+VIP++V 
Sbjct: 427 AMLKPVHVAGSTVARTTLHNPFEVKR-----------KGILIGDTVVVRKAGDVIPELVG 475

Query: 416 IIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472
            ++  R       + F  P  CP C +++         +     RC    +C AQ  ER+
Sbjct: 476 PVLERRKGRESELREFVMPEHCPSCGAKLA-----PAKEGDKDIRCPNVESCPAQLTERV 530

Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSED 499
                R AF+IE LG Q        E+
Sbjct: 531 ISLGMRKAFDIEHLGDQSAIALTNPEE 557



 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 16/205 (7%)

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
            I+     +   + + I+K +   L R + +L IR +G   AR +A    S    ++   
Sbjct: 718 PIIVKPAENTRKMLEEIDKAKQADLWRVLVALSIRRLGPPTARLIASAMGSLDAISKA-- 775

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-----CAVEALLKEVSPSIGRHE 640
                       L ++  VG  IA+++V ++   R         + A            +
Sbjct: 776 --------SVDDLTQIDGVGPEIAESVVHWFAAAREPGDWRGQTLTAWRAAGVGVGEAAK 827

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
            ++   +  K +V TG+L+   R  A+E + + G   +  +S+KTD +++G N GSK  K
Sbjct: 828 SSLPQTLAGKTVVVTGSLEGFSRDSAKEAIMERGGKAAGSVSKKTDYVVIGANAGSKAAK 887

Query: 701 AQQLGVKIMNEEQFLFLLQ-QYNTT 724
           A++LG+ +++E QF  LL  +Y   
Sbjct: 888 AEELGIPMLDEAQFELLLAGEYGAD 912


>gi|319760626|ref|YP_004124564.1| DNA ligase [Candidatus Blochmannia vafer str. BVAF]
 gi|318039340|gb|ADV33890.1| DNA ligase [Candidatus Blochmannia vafer str. BVAF]
          Length = 598

 Score =  314 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 204/609 (33%), Positives = 319/609 (52%), Gaps = 46/609 (7%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
             +  YY  ++    D EYD   +    +   +P L      N P   +G  +  +  +V
Sbjct: 17  QWEYAYYLKNESETSDEEYDKTLQELRQLEFEYPCLI---TENSPTKFLGKILENNFRQV 73

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
            H  P LSL  + N   L  F  RI  +      + SI +  E KIDG  I++ Y+ GK 
Sbjct: 74  YHRAPMLSLNSVMNKSQLLLFNDRIEYKLRDNNQNKSIIYCCELKIDGVAISLLYKSGKL 133

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEVYISKNDFLALNDE 204
           + AA RGDG  GEDV+  +R + +IP  L  N     P ++E+RGE++ISK  FL LN +
Sbjct: 134 LKAATRGDGKIGEDVTKNVRVVSSIPECLRKNDGMQLPYLLEIRGEIFISKLCFLKLNQK 193

Query: 205 MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK--TSEIFAKGQYEMLQKM 261
           ++  G KP++N RNAASG LR+LNP    +R L F+ +G+     ++      ++ LQ  
Sbjct: 194 ILKSGNKPFSNARNAASGSLRQLNPNITASRSLMFYCYGISYYVGADELPNSHWDRLQLC 253

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
             LG P+N+ ++  N    ++ YY+ +  IRS L YDIDG+V KVD    QK+LG   R+
Sbjct: 254 LKLGIPINDHIQLVNGVDKVLKYYDHITYIRSNLKYDIDGIVVKVDNCVFQKKLGYGTRA 313

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           P W I++KF  +   T+L DI  ++GRTG++TP+  ++P+ I   +I   ++HN + I+ 
Sbjct: 314 PHWAIAYKFPAESKLTQLNDIIFKVGRTGLITPIVYIKPIVINNVVIKKVSMHNVNEIRR 373

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
                       ++  GD VLV+R+G+VIPK+V +I+++R  D +  + P FCP+C + +
Sbjct: 374 F-----------NLMFGDTVLVQRSGDVIPKIVKVILSKRTNDMKVITLPQFCPVCGTLL 422

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           +           +  RC   L C AQ+   LKHFVSR A NI G+G++ ++         
Sbjct: 423 ITSNC-----RSSVLRCPAKLICLAQRKSMLKHFVSRKAMNIHGMGEKVINQLVDKN--- 474

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             +  P D F L R        + N+ G+G  SV  L  SI+  ++ +L  FI++LGI +
Sbjct: 475 -LVFSPVDFFYLNRE-----NLLFNLDGYGVKSVEKLLRSIDLAKHTTLANFIYALGIPN 528

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG  +A SLA  Y + +               D+ SL  +  VGD IA  I  F+++P N
Sbjct: 529 VGESVANSLAVKYKTIEKLISA----------DFQSLSTLQYVGDSIAFTIYSFFKDPIN 578

Query: 622 ICAVEALLK 630
           +  ++ L+ 
Sbjct: 579 LKNIKDLIN 587


>gi|317481657|ref|ZP_07940691.1| DNA ligase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916889|gb|EFV38277.1| DNA ligase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 920

 Score =  314 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 158/508 (31%), Positives = 256/508 (50%), Gaps = 35/508 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L  
Sbjct: 53  DVNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   + 
Sbjct: 111 -DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--- 184
            + E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L     ++   
Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLVGPKEDVPDF 229

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGL
Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289

Query: 244 GKTSEIFAKG---------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           G+ +               Q +        G PV+   R   +F  I+         R  
Sbjct: 290 GQLTWGPDHPRGTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRTG +TP
Sbjct: 350 IEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ +   TLHN   +K            + I +GD V+V++AG+VIP++V
Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPELV 458

Query: 415 DIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R         F  P FCP C +++         +     RC    +C AQ  ER
Sbjct: 459 GPVLERRKGREDQLREFVMPEFCPSCGAKL-----SPAKEGDKDIRCPNVESCPAQLTER 513

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           +    SR AF+IE LG+Q        E+
Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541



 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 15/192 (7%)

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
            +   ++D ++K R+  L R + +L IR +G   AR +A    S                
Sbjct: 735 ENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLAAIENAT-------- 786

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQN-----PRNICAVEALLKEVSPSIGRHEKNVSSEI 647
                L  +  VG  IA+++V ++             + A              ++   +
Sbjct: 787 --IEDLTAIDGVGPEIAESVVNWFAATREPGDWRGATLRAWQAAGVGVDEAETSSLPQTL 844

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
             K +V TG+L+   R  A+E + + G   +  +S+KTD +++G N GSK  KA++LG+ 
Sbjct: 845 AGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKAAKAEELGIP 904

Query: 708 IMNEEQFLFLLQ 719
           +++E QF  LL 
Sbjct: 905 MLSETQFAQLLA 916


>gi|322689624|ref|YP_004209358.1| DNA ligase [Bifidobacterium longum subsp. infantis 157F]
 gi|322691585|ref|YP_004221155.1| DNA ligase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|291516189|emb|CBK69805.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. longum F8]
 gi|320456441|dbj|BAJ67063.1| DNA ligase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320460960|dbj|BAJ71580.1| DNA ligase [Bifidobacterium longum subsp. infantis 157F]
          Length = 920

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 158/508 (31%), Positives = 257/508 (50%), Gaps = 35/508 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L  
Sbjct: 53  DVNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   + 
Sbjct: 111 -DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPEI 184
            + E KIDG  + + Y  G       RGDG +GED++  +R I +IP        ++P+ 
Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDF 229

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGL
Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289

Query: 244 GKTSEIFAKG---------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           G+ +               Q +        G PV+   R   +F  I+         R  
Sbjct: 290 GQLTWGPDHPRGTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRTG +TP
Sbjct: 350 IEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ +   TLHN   +K            + I +GD V+V++AG+VIP++V
Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPELV 458

Query: 415 DIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R         F  P FCP C +++         +     RC    +C AQ  ER
Sbjct: 459 GPVLERRKGREDQLREFVMPEFCPSCGAKL-----SPAKEGDKDIRCPNVESCPAQLTER 513

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           +    SR AF+IE LG+Q        E+
Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541



 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 15/192 (7%)

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
            +   ++D ++K R+  L R + +L IR +G   AR +A    S                
Sbjct: 735 ENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLAAIENAT-------- 786

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQN-----PRNICAVEALLKEVSPSIGRHEKNVSSEI 647
                L  +  VG  IA+++V ++             + A              ++   +
Sbjct: 787 --IEDLTAIDGVGPEIAESVVNWFAATREPGDWRGATLRAWQAAGVGVDEAETSSLPQTL 844

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
             K +V TG+L+   R  A+E + + G   +  +S+KTD +++G N GSK  KA++LG+ 
Sbjct: 845 AGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKAAKAEELGIP 904

Query: 708 IMNEEQFLFLLQ 719
           +++E QF  LL 
Sbjct: 905 MLSETQFAQLLA 916


>gi|239620760|ref|ZP_04663791.1| LigA [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|312132368|ref|YP_003999707.1| lig [Bifidobacterium longum subsp. longum BBMN68]
 gi|239516336|gb|EEQ56203.1| LigA [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|311772424|gb|ADQ01912.1| Lig [Bifidobacterium longum subsp. longum BBMN68]
          Length = 920

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 158/508 (31%), Positives = 257/508 (50%), Gaps = 35/508 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L  
Sbjct: 53  DVNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   + 
Sbjct: 111 -DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPEI 184
            + E KIDG  + + Y  G       RGDG +GED++  +R I +IP        ++P+ 
Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDF 229

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGL
Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289

Query: 244 GKTSEIFAKG---------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           G+ +               Q +        G PV+   R   +F  I+         R  
Sbjct: 290 GQLTWGPDHPRGTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRTG +TP
Sbjct: 350 IEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ +   TLHN   +K            + I +GD V+V++AG+VIP++V
Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPELV 458

Query: 415 DIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R         F  P FCP C +++         +     RC    +C AQ  ER
Sbjct: 459 GPVLERRKGREDQLREFVMPEFCPSCGAKL-----SPAKEGDKDIRCPNVESCPAQLTER 513

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           +    SR AF+IE LG+Q        E+
Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541



 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 15/192 (7%)

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
            +   ++D ++K R+  L R + +L IR +G   AR +A    S                
Sbjct: 735 ENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLAAIENAT-------- 786

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQN-----PRNICAVEALLKEVSPSIGRHEKNVSSEI 647
                L  +  VG  IA+++V ++             + A              ++   +
Sbjct: 787 --IEDLTAIDGVGPEIAESVVNWFAATREPGDWRGATLRAWQAAGVGVDEAETSSLPQTL 844

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
             K +V TG+L+   R  A+E + + G   +  +S+KTD +++G N GSK  KA++LG+ 
Sbjct: 845 AGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKAAKAEELGIP 904

Query: 708 IMNEEQFLFLLQ 719
           +++E QF  LL 
Sbjct: 905 MLSETQFAQLLA 916


>gi|23464680|ref|NP_695283.1| LigA [Bifidobacterium longum NCC2705]
 gi|81754681|sp|Q8G830|DNLJ_BIFLO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|23325242|gb|AAN23919.1| LigA [Bifidobacterium longum NCC2705]
          Length = 920

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 158/508 (31%), Positives = 257/508 (50%), Gaps = 35/508 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L  
Sbjct: 53  DVNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   + 
Sbjct: 111 -DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPEI 184
            + E KIDG  + + Y  G       RGDG +GED++  +R I +IP        ++P+ 
Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDF 229

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGL
Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289

Query: 244 GKTSEIFAKG---------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           G+ +               Q +        G PV+   R   +F  I+         R  
Sbjct: 290 GQLTWGPDHPRGTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRTG +TP
Sbjct: 350 IEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ +   TLHN   +K            + I +GD V+V++AG+VIP++V
Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPELV 458

Query: 415 DIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R         F  P FCP C +++         +     RC    +C AQ  ER
Sbjct: 459 GPVLERRKGREDQLREFVMPEFCPSCGAKL-----SPAKEGDKDIRCPNVESCPAQLTER 513

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           +    SR AF+IE LG+Q        E+
Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541



 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 15/192 (7%)

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
            +   ++D ++K R+  L R + +L IR +G   AR +A    S                
Sbjct: 735 ENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLAAIENAT-------- 786

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQN-----PRNICAVEALLKEVSPSIGRHEKNVSSEI 647
                L  +  VG  IA+++V ++             + A              ++   +
Sbjct: 787 --IEDLTAIDGVGPEIAESVVNWFAATREPGDWRGATLRAWQAAGVGVDEAETSSLPQTL 844

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
             K +V TG+L+   R  A+E + + G   +  +S+KTD +++G N GSK  KA++LG+ 
Sbjct: 845 AGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKAAKAEELGIP 904

Query: 708 IMNEEQFLFLLQ 719
           +++E QF  LL 
Sbjct: 905 MLSETQFAQLLA 916


>gi|310287227|ref|YP_003938485.1| NAD-dependent DNA ligase [Bifidobacterium bifidum S17]
 gi|309251163|gb|ADO52911.1| NAD-dependent DNA ligase [Bifidobacterium bifidum S17]
          Length = 900

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 167/509 (32%), Positives = 258/509 (50%), Gaps = 35/509 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + +LS E A +  + +   +      YY    P+  D+ YDA  R    +   FP L 
Sbjct: 62  LDVSSLSNEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQRLEAEFPSL- 120

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             + P  P +++GG  +     V H    +SL+ +++IE+LR +   + R     +   +
Sbjct: 121 --DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVLRDLDWPEGKPL 178

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I +IP  L      IPE
Sbjct: 179 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGLTGEDITLNVRTIGSIPANLGGPAADIPE 238

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E+RGEV++  +DF ALN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 239 FVEIRGEVFMRWDDFKALNGEQEDAGRPPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 298

Query: 243 LGKTSE---------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           +G                  Q E        G PV+   R+  +F  I+   +     R 
Sbjct: 299 IGTLRWGSGRPVGSHDVVADQSEAYTLYSKWGVPVSPHNREVTSFAQILDMIDYYGEHRG 358

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +T
Sbjct: 359 DIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVT 418

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L+PV + G+ ++  TLHN   +K            + + +GD V+V++AG+VIP++
Sbjct: 419 PVAVLKPVYVAGSTVSRTTLHNPFEVKR-----------KGVLIGDTVVVRKAGDVIPEL 467

Query: 414 VDIIVNERHP---DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           V  +V  R     D + F  P  CP C S++         +     RC    +C AQ  E
Sbjct: 468 VGPVVERRKGREDDLREFVMPDRCPSCGSKLA-----PAKEGDKDIRCPNVESCPAQLTE 522

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           R+ +  SR AF+IE LG Q        E+
Sbjct: 523 RIINLASRKAFDIEHLGDQSAIALTNPEE 551



 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 15/214 (7%)

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
             + R+   + T    +      +   ++D ++K R+  L R + +L IR +G   AR +
Sbjct: 692 VRVDRKTTRNGTVDVPVYVRPGENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLI 751

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-----CAV 625
           A  + S     Q               L  +  +G  IA+++V ++   R         +
Sbjct: 752 ASAFGSLDAIEQA----------GVDELSAIDGIGPEIAESVVNWFAAAREPRDWRGETL 801

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
            A               +   +  K +V TG+L+   R  A+E + + G   +  +S+KT
Sbjct: 802 RAWQAAGVGVAAAETSTLPQTLAGKTVVVTGSLEGFSRDSAKEAIIERGGKAAGSVSKKT 861

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           D ++VG+N GSK  KA++LG+ +++E QF  LL+
Sbjct: 862 DWVVVGENAGSKAAKAEELGIPMLDEAQFRTLLE 895


>gi|227546782|ref|ZP_03976831.1| DNA ligase (NAD(+)) [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227212744|gb|EEI80625.1| DNA ligase (NAD(+)) [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 920

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 158/508 (31%), Positives = 257/508 (50%), Gaps = 35/508 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L  
Sbjct: 53  DVNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   + 
Sbjct: 111 -DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPEI 184
            + E KIDG  + + Y  G       RGDG +GED++  +R I +IP        ++P+ 
Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDF 229

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGL
Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289

Query: 244 GKTSEIFAKG---------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           G+ +               Q +        G PV+   R   +F  I+         R  
Sbjct: 290 GQLTWGADHPRGTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRTG +TP
Sbjct: 350 IEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ +   TLHN   +K            + I +GD V+V++AG+VIP++V
Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPELV 458

Query: 415 DIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R         F  P FCP C +++         +     RC    +C AQ  ER
Sbjct: 459 GPVLERRKGREDQLREFVMPEFCPSCGAKL-----SPAKEGDKDIRCPNVESCPAQLTER 513

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           +    SR AF+IE LG+Q        E+
Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541



 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 15/192 (7%)

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
            +   ++D ++K R+  L R + +L IR +G   AR +A    S                
Sbjct: 735 ENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLAAIENAT-------- 786

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQN-----PRNICAVEALLKEVSPSIGRHEKNVSSEI 647
                L  +  VG  IA+++V ++             + A              ++   +
Sbjct: 787 --IEDLTAIDGVGPEIAESVVNWFAATREPGDWRGATLRAWQAAGVGVDEAETSSLPQTL 844

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
             K +V TG+L+   R  A+E + + G   +  +S+KTD +++G N GSK  KA++LG+ 
Sbjct: 845 AGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKAAKAEELGIP 904

Query: 708 IMNEEQFLFLLQ 719
           +++E QF  LL 
Sbjct: 905 MLSETQFAQLLA 916


>gi|300728177|ref|ZP_07061548.1| putative DNA ligase [Prevotella bryantii B14]
 gi|299774603|gb|EFI71224.1| putative DNA ligase [Prevotella bryantii B14]
          Length = 705

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 167/755 (22%), Positives = 286/755 (37%), Gaps = 103/755 (13%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++ ++   E+      ++   D YY     I+ D E+DAL  R   +             
Sbjct: 1   MAEDKI-LEMRKAVDLLNRAADAYYNGQAEIMTDYEWDALFDRLKVLEQE----TGVILE 55

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P++ +  +      K  H    LSL K    EDL K+                   + 
Sbjct: 56  ESPIHHVSADSITG-QKEEHEFAALSLAKTKKTEDLTKWAD------------GKPIWIS 102

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  +   Y+KGK      RGDGH G +++    AI  IP    +     I VRGE 
Sbjct: 103 WKLDGLTLVATYDKGKLTKVVTRGDGHFGTNITHLAPAIQGIP--QKIKNKGHIVVRGEC 160

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
            IS  DF            + YANPRN ASG L   +  +  +R+L +    L  T E  
Sbjct: 161 VISYADFNQFL----IESGEDYANPRNLASGSLTLKDIDEVKSRHLQWIPFTLVYTDENI 216

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM--KSIRSTLPYDIDGLVYKVDE 308
                 M          V +          I    +    +  ++  P+ +DGLV   ++
Sbjct: 217 NSWGKRMAFLEDNGMKTVKHECILTPNQDNIQKVIDRWTEEVTKNKNPFPVDGLVIAYED 276

Query: 309 FSLQKQLG-ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +   +        + R   + K+ ++ A+++L  I+     +  ++PVA  EPV + G  
Sbjct: 277 YEYSQTGSITGHHATRAGYAFKWKDESATSKLDHIEWSCAAST-ISPVAVFEPVELEGTT 335

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +  A+L N    + L    K             + V +A ++IPKV+ +           
Sbjct: 336 VQRASLCNISECERLGIGDKD----------SVLSVIKANKIIPKVIQVQQKV-----GE 380

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
              P  CP+C S+     +  +G       C+     + Q  ++   FVS+D  +I+G+ 
Sbjct: 381 LHIPETCPVCHSQTQIVTSIASGTRT--LHCSNPKCPAKQL-KKFARFVSKDGLDIDGIS 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +Q L  F         I+  ADIF L         +I  + GFG  S  N++ +I K RN
Sbjct: 438 EQTLSRFIN----MGWIKEYADIFRLSAHLN----QIATLEGFGKKSANNIHKAIEKSRN 489

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ------EINNIIAHNNDDWLSL--- 598
               + +++L I  VG ++   L K Y   +  A        IN  I    +D   L   
Sbjct: 490 AEAHKLLYALCIPLVGKDVCNRLLKSYP-LEKLAAIASGNPNINKPIVTEKEDNYELDLF 548

Query: 599 ----------------------------------IRVPLVGDIIAQAIVEFYQNPRNICA 624
                                               +  +G   + ++V+++ +  N   
Sbjct: 549 AQNEQENLLSNTTEGTTDANTFTPLSIDTRIAIFAGIDGLGPEKSASVVKWFSDEENQNE 608

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSR 683
              LL  +  S   +   +  + E    V TG +   + R++ + Y+   G  V+  +S+
Sbjct: 609 YRNLLGLLHLSQDDNN-PLGQKCEGLTFVITGDVHHYKNRNELKAYIESQGGKVTGSVSK 667

Query: 684 KTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716
            T  +I  D  +   K +KA QL + I++E+QF+ 
Sbjct: 668 STSYLINNDVTSTSGKNQKAHQLNIPIISEDQFIE 702


>gi|23336066|ref|ZP_00121295.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Bifidobacterium longum DJO10A]
 gi|189438929|ref|YP_001954010.1| NAD-dependent DNA ligase [Bifidobacterium longum DJO10A]
 gi|254781259|sp|B3DPR8|DNLJ_BIFLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189427364|gb|ACD97512.1| NAD-dependent DNA ligase [Bifidobacterium longum DJO10A]
          Length = 920

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 158/508 (31%), Positives = 257/508 (50%), Gaps = 35/508 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L  
Sbjct: 53  DVNMMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   + 
Sbjct: 111 -DNPQSPTHRVGGSFSNDFTSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPEI 184
            + E KIDG  + + Y  G       RGDG +GED++  +R I +IP        ++P+ 
Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDF 229

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGL
Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289

Query: 244 GKTSEIFAKG---------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           G+ +               Q +        G PV+   R   +F  I+         R  
Sbjct: 290 GQLTWGPDHPRGTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRTG +TP
Sbjct: 350 IEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ +   TLHN   +K            + I +GD V+V++AG+VIP++V
Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPELV 458

Query: 415 DIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R         F  P FCP C +++         +     RC    +C AQ  ER
Sbjct: 459 GPVLERRKGREDQLREFVMPEFCPSCGAKL-----SPAKEGDKDIRCPNVESCPAQLTER 513

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           +    SR AF+IE LG+Q        E+
Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541



 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 15/192 (7%)

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
            +   ++D ++K R+  L R + +L IR +G   AR +A    S                
Sbjct: 735 ENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLAAIENAT-------- 786

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQN-----PRNICAVEALLKEVSPSIGRHEKNVSSEI 647
                L  +  VG  IA+++V ++             + A              ++   +
Sbjct: 787 --IEDLTAIDGVGPEIAESVVNWFAATREPGDWRGATLRAWQAAGVGVDEAETSSLPQTL 844

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
             K +V TG+L+   R  A+E + + G   +  +S+KTD +++G N GSK  KA++LG+ 
Sbjct: 845 AGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKAAKAEELGIP 904

Query: 708 IMNEEQFLFLLQ 719
           +++E QF  LL 
Sbjct: 905 MLSETQFAQLLA 916


>gi|296454555|ref|YP_003661698.1| DNA ligase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183986|gb|ADH00868.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 920

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 158/508 (31%), Positives = 258/508 (50%), Gaps = 35/508 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L  
Sbjct: 53  DVNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   + 
Sbjct: 111 -DNPQSPTHRVGGSFSNDFTSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPEI 184
            + E KIDG  + + Y  G       RGDG +GED++  +R I +IP        ++P+ 
Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDF 229

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGL
Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289

Query: 244 GKTSEIFAKG---------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           G+ +               Q +        G PV+   R   +F  I+         R  
Sbjct: 290 GQLTWGPDHPRGTHDVVADQSQAYDLYTRWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRTG +TP
Sbjct: 350 IEHALDGIVVKVDDLGLQRALGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ +   TLHN   +K            + I +GD V+V++AG+VIP++V
Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPELV 458

Query: 415 DIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R       + F  P FCP C +++         +     RC    +C AQ  ER
Sbjct: 459 GPVLERRKGREGQLREFVMPEFCPSCGAKLA-----PAKEGDKDIRCPNVESCPAQLTER 513

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           +    SR AF+IE LG+Q        E+
Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541



 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 15/192 (7%)

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
            +   ++D ++K R+  L R + +L IR +G   AR +A    S                
Sbjct: 735 ENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLAAIENAT-------- 786

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-----CAVEALLKEVSPSIGRHEKNVSSEI 647
                L  +  VG  IA+++V ++   R         + A              ++   +
Sbjct: 787 --IEDLTAIDGVGPEIAESVVNWFAAAREPGDWRGATLRAWQAAGVGVDEAETSSLPQTL 844

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
             K +V TG+L+   R  A+E + + G   +  +S+KTD +++G N GSK  KA++LG+ 
Sbjct: 845 AGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKATKAEELGIP 904

Query: 708 IMNEEQFLFLLQ 719
           ++ E QF  LL 
Sbjct: 905 MLGEAQFAQLLA 916


>gi|116514984|ref|YP_802613.1| DNA ligase [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|122285620|sp|Q058C9|DNLJ_BUCCC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116256838|gb|ABJ90520.1| DNA ligase [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 587

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 194/626 (30%), Positives = 322/626 (51%), Gaps = 42/626 (6%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++    ++  L+ +I YH+  Y+    PII D  YD L  +   +   +      +    
Sbjct: 1   MKDIYNQILKLQLQIKYHNYMYHTLDSPIISDILYDELYNKLLQLEKLYFKKKSLDKKIK 60

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
            L+++G +      +  H IP LSL  I NI D   F  +I  +   K  N I +  + K
Sbjct: 61  LLDQVGAKKLHIFTEFFHKIPMLSLRSINNISDFDLFDKKIKEY--FKHINVITYFCDFK 118

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
            DG  + + Y+ G  + A+ RG+G  GE+++  I  I +IP+ ++ +  P+ IE+RGE++
Sbjct: 119 FDGLAVNLFYKNGILISASTRGNGSVGENITKNILMISSIPKKIAGSNIPKKIEIRGEIF 178

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLG-KTSEIF 250
           + K+DF  LN      G+K ++NPRNAA+G +R+LNP     R LNFFV+G G       
Sbjct: 179 MRKSDFFILNQSCKLSGKKEFSNPRNAAAGSVRQLNPEIVKKRKLNFFVYGFGLFDYNKK 238

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y+ L +++  GFP+            ++ +Y+    IRS L ++IDG+V K+D   
Sbjct: 239 IDSHYQRLLQIKKWGFPLYKNYCVCKNKKEVIHFYHYANKIRSQLDFEIDGIVIKLDSIK 298

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ  LG   + P+W I+ KF      T++  I  ++GRTGI+TPVA   P+N+ G  I+ 
Sbjct: 299 LQNNLGCIEKYPKWAIALKFFSLDKETKIFKISFKVGRTGIITPVAYFFPINLFGVSISK 358

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           A+L+N   IK L           DIR+ D V V RAG+VIPK+ ++++++R+   Q    
Sbjct: 359 ASLYNIKTIKLL-----------DIRLHDYVTVYRAGDVIPKIRNVLIHKRNKYTQKIII 407

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P++CP C ++++   + KT        C    +C +Q ++RL +F S++  N +GLGK+ 
Sbjct: 408 PTYCPSCCTKLIFSDDLKT------CYCPASFSCFSQNVKRLIYFSSKNGLNFKGLGKKN 461

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +            +  P D F+L      +  K++NI   GD     +  +I   + +SL
Sbjct: 462 IIKLINY----GYLYTPIDFFSL------TVKKLKNIFRMGDKLSEKIIKNIAFSKRVSL 511

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           ++FI SLGI  VG  IA+ LA YY S + F           N ++ +L ++  +G  I+ 
Sbjct: 512 DKFICSLGIFGVGTSIAKRLAYYYRSVEKFF----------NTNYDTLSKIDHIGYNISN 561

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI 636
           AI+ F +N  N   +  L++ ++  I
Sbjct: 562 AIISFLKNKSNRSIILKLIRILNIFI 587


>gi|212715716|ref|ZP_03323844.1| hypothetical protein BIFCAT_00616 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661083|gb|EEB21658.1| hypothetical protein BIFCAT_00616 [Bifidobacterium catenulatum DSM
           16992]
          Length = 891

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 163/509 (32%), Positives = 260/509 (51%), Gaps = 34/509 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + ++S E A +  + +   +      YY    P+  D+ YDA  R   A+   FP L 
Sbjct: 63  LDVSSMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARMRCLQALEAQFPSL- 121

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             +    P +++GG  +     V H    +SL+ ++++E+LR++   + R     D   +
Sbjct: 122 --DSTQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSLEELREWYDSVIRGLDWSDTKPL 179

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPE 183
             T E KIDG  + + Y  G       RGDG +GED++  +R I TIP+       +IPE
Sbjct: 180 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEEDIPE 239

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHG 242
            +E+RGEV++  +DF  LN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 240 FVEIRGEVFMRWDDFNTLNRESEDAGRAPFANPRNAAAGSLRQKDPRITSTRRLSFYAHG 299

Query: 243 LGKTSE--------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           +G                 Q E  +  +  G PV+   R+  TF  I+   +     R  
Sbjct: 300 IGTLQWGAKRGDGHDIVNNQSEAYELYKKWGIPVSPHNREVTTFSQILDMIDYYGEHRGD 359

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +TP
Sbjct: 360 IEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVTP 419

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ ++  TLHN   ++            + + +GD V+V++AG+VIP++V
Sbjct: 420 VAILKPVYVAGSTVSRTTLHNPFEVER-----------KGVLIGDTVVVRKAGDVIPELV 468

Query: 415 DIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R         F  PS CP C +++         +     RC    +C AQ  ER
Sbjct: 469 GPVLERREGREDQLRRFVMPSQCPSCGAQLA-----PAKEGDKDIRCPNVESCPAQLTER 523

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           + +  SR AF+IE LG Q        E+ 
Sbjct: 524 IINLASRKAFDIEHLGDQSAIALTNPEED 552



 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 91/194 (46%), Gaps = 15/194 (7%)

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
              +   + D I+K R+  L R + +L IR +G   AR +A    S     +        
Sbjct: 704 PAENTRKMLDEIDKARHADLWRVLVALSIRRLGPPTARVIANTLGSLDAIERA------- 756

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-----CAVEALLKEVSPSIGRHEKNVSS 645
                  L ++  +G  IA+++V ++ + +         +EA       +       +  
Sbjct: 757 ---SVDELSQIDGIGPEIAESVVTWFASAKEPGDWRGTVLEAWKAAGVGAEQVEISTLPQ 813

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +E K +V TG+L    R  A+E +   G   S  +S+KTD +++G+N G+K  KA++LG
Sbjct: 814 TLEGKTVVVTGSLIDFSRDSAKEAIISRGGRASGSVSKKTDWVVIGENAGAKAAKAEELG 873

Query: 706 VKIMNEEQFLFLLQ 719
           V ++NE+QF  LL+
Sbjct: 874 VPMLNEDQFKILLE 887


>gi|315124105|ref|YP_004066109.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315017827|gb|ADT65920.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 561

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 173/617 (28%), Positives = 297/617 (48%), Gaps = 59/617 (9%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E        +     YY+  +P+  D EYD L R                  + P  K
Sbjct: 3   KEEYLEKVALANLWMRAYYEKDEPLASDEEYDVLIRELRVFEEQN---KDEISKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP   ++   E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIP--KNIAYKERIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G  + +      +
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSD 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ ++       ++  Y+E+ ++R   P  +DG+V +VD+ +L ++LG
Sbjct: 229 VMQFIRELGFLKDDFIKLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 YTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L           D+++ D V V R+G+VIPK+  +    R       S P  CP 
Sbjct: 349 DEIARL-----------DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPT 397

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           CQS ++ +                 + C  + +  + HFVS+   NI+GLG+  ++  +K
Sbjct: 398 CQSELLDEGTLIK---------CQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYK 448

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +           I TL+       +  E + GF +  + NL ++I + R   L RFI +
Sbjct: 449 HK----------KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITA 498

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G   A+ L+  +                +   + +   +   G+ +A ++ EF 
Sbjct: 499 LGIEHIGEVAAKKLSLSFG------------KEWHKQSFEAYANLEGFGEQMALSLCEFT 546

Query: 617 QNPRNICAVEALLKEVS 633
           +   N   ++   K ++
Sbjct: 547 RV--NRTRIDEFYKLLN 561


>gi|301168580|emb|CBW28170.1| DNA ligase [Bacteriovorax marinus SJ]
          Length = 628

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 167/702 (23%), Positives = 302/702 (43%), Gaps = 81/702 (11%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +  LE+EI +H   YY   +  I D EYD L+     +            P+ P+ K+
Sbjct: 4   KRIQELEKEIEHHKVLYY-KGQTEIPDHEYDKLEDELREL-----------SPDSPILKM 51

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
            G +  +  KV H    LSL K +  ++L  ++                     KIDG  
Sbjct: 52  VGSVVTAEDKVKHDEKMLSLAKTYKEDELATWMD------------GREAISMYKIDGMS 99

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
            ++ YE G  V A  RGDG  GE++++    I TIP  +     + IEVRGE+Y  +  F
Sbjct: 100 CSLIYENGNLVLAKTRGDGTFGENITSKALWIDTIPNTIKE--EKRIEVRGEIYCDEEHF 157

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
            +L+D+M+A+G +   + RN  +GI+ R +   +++ L F    L    +I  + + E +
Sbjct: 158 FSLSDDMVALGLEKPTSQRNIVAGIISRKDHLQLSKKLTFKAFEL--LGDISVQTEVEKV 215

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +   GF              +    +E K   +   Y IDG+V+  ++    ++LGE 
Sbjct: 216 KYLEAQGFETLEYT-LHKDAKSLSKTIDEAKDFMAEGDYLIDGIVFSFNDQKWHRELGET 274

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           A  PR+ ++ KF  +   T + +I  Q+ R GILTPVA ++PV + GA I+  TLHN   
Sbjct: 275 AHHPRYKMAFKFQGESRETVIENILWQVSRNGILTPVANVKPVELSGAKISRVTLHNFGL 334

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           +K  +           ++ GDR+ + R+GEVIPK ++++ +        FS+P  CP C 
Sbjct: 335 VKQFE-----------LKQGDRIEIIRSGEVIPKFLEVVESSDEE----FSYPKTCPSC- 378

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
                  + +   +     C      +  +   L +        I+ L  ++L+   +++
Sbjct: 379 -------DEEIEVVDIRLICRNSECPAIVKESILNYI---QKIGIDDLSSKRLEELIRAK 428

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                +   +D++ L          +  +    +   T L  +I K + + L  F+ +LG
Sbjct: 429 ----LVLKISDLYKLNME------SLLTLDKVKEKLATKLLGAIEKSKTVDLVTFLSALG 478

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I          +              +++    +     LI +       A     +   
Sbjct: 479 ISGGAYNKCEKV---------VFAGHDSLEKVKSLTPDKLILIDGFAKKSADDF--YLSL 527

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
                 +E L              V +++ NKK+  TG+L + +R   +  +     +V 
Sbjct: 528 SEKFPLIEELESVG--FSFEEVIKVETKVSNKKICITGSLSE-KRSVIESKIRDASGIVV 584

Query: 679 AILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + +S+ TDI++  D  +  SKL+KA+ LG+ I+ EE+ + ++
Sbjct: 585 SSVSKNTDILVTNDQSSGSSKLKKAKDLGILIITEEELISMI 626


>gi|189490484|ref|YP_001957054.1| putative DNA ligase [Pseudomonas phage 201phi2-1]
 gi|164609549|gb|ABY63158.1| putative DNA ligase [Pseudomonas phage 201phi2-1]
          Length = 695

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 178/726 (24%), Positives = 305/726 (42%), Gaps = 78/726 (10%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R E   L + I +++  YY     II DS YD L      +    P+       + P   
Sbjct: 4   RHEYDVLCKRIRHYNYMYYVLDISIIPDSLYDQLLISLKLLEKEHPEWVTR---DSPTQT 60

Query: 78  IGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEPKID 135
           +G  +       V    P LSL+ ++  ++   +   I+   +  K D S     E K+D
Sbjct: 61  VGHPVYESHFELVKRVKPMLSLDNLFTCDEAVDWSIDIHGDIYVGKKDESAEIVAEWKMD 120

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y       A+ RGDG +GEDV+     +  IPRVL       + +RGEV +  
Sbjct: 121 GLSLDVNYTYDTMELASTRGDGTTGEDVTPNAMVVEGIPRVLKTPRHGGVSIRGEVVVRL 180

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            D+  +N ++ A G+K +ANPRN A+G LR+ +P     R L F  + + +T        
Sbjct: 181 ADYNQINADLEAAGKKTFANPRNYAAGSLRQKDPRITRERKLVFVAYSVERTLGDPEATW 240

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFH-----GIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           Y+    ++  GF   +  ++ +        G  +   E ++ RS+ P+++DG+V+KV + 
Sbjct: 241 YDDQAWLKENGFYTADTGKRLSHDQRGMTSGFPALIAECQAERSSYPFEVDGIVFKVVKH 300

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           + ++ LG  +R PRW  ++KF   +  TRL+ +D Q+GRTG LTP+AR+EP+++ G  I+
Sbjct: 301 THRETLGYTSRFPRWGRAYKFPASKGETRLISVDRQVGRTGKLTPMARIEPIHVHGTTIS 360

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
           N T+HN   ++              +  G  V + RAG+VIP +   I +  H   + + 
Sbjct: 361 NVTIHNLKELE-----------QHKLFEGCYVEISRAGDVIPYLERRITD--HNGEKLYG 407

Query: 430 FPSFCPICQSRVVRDLNPKTGK--LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
               CP C ++VV     KT +    +         C  +Q+  L +   R   NI+GLG
Sbjct: 408 EVEACPCCGTKVVVVHGKKTKENPEGSRTEYCPNTKCKDRQVAHLLYCTQRHVLNIKGLG 467

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +   + +      +  P  +  L+        + E +      +            N
Sbjct: 468 DELVMDLYNAGVVD--VTRPLSLLMLKHEDFLKIGQSERM------AEKLAMAVTIASAN 519

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
           + L R I +LGI       A  LA+   + +  +                ++ +  +GD+
Sbjct: 520 LDLTRVITALGISGAADGTAERLAREIRTLEEISIAT----------IDRMLEIDDIGDV 569

Query: 608 IAQAIVEFYQNPRNICAV--EALLKEVSPSIGRHEKNVSSEIE-NKKLVFTGTLQKIQ-- 662
            AQ+I EF+ +  N       A    V     +  + + +        V TG+  K    
Sbjct: 570 TAQSIFEFF-DEDNRKPHGQSAWRPYVGDRYLKAPEPLGTLFRPGTTFVVTGS--KFGDK 626

Query: 663 -RHKAQEYVTQLGAVVS------------AILSRKTDIIIVGDNPGSKLEKAQQLGVK-- 707
            R   + +  Q GA VS               ++ T           KL  A++LG+   
Sbjct: 627 ARKDLERWFKQNGATVSSTVTKSTTTVYCG--TKYTAH---------KLATAKELGIPYV 675

Query: 708 IMNEEQ 713
           I NE+ 
Sbjct: 676 IYNEDG 681


>gi|213691626|ref|YP_002322212.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|254781260|sp|B7GPV4|DNLJ_BIFLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|213523087|gb|ACJ51834.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320457713|dbj|BAJ68334.1| DNA ligase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 921

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 157/508 (30%), Positives = 257/508 (50%), Gaps = 35/508 (6%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +  ++ E A +  + +   +      YY    P+  D+ YDA  R  + +  AFP L  
Sbjct: 53  DVNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL-- 110

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     +   + 
Sbjct: 111 -DNPQSPTHRVGGSFSNDFVSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLP 169

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPEI 184
            + E KIDG  + + Y  G       RGDG +GED++  +R I +IP        ++P+ 
Sbjct: 170 MSCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDF 229

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
           +E+RGEV++  +DF  LN+E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HGL
Sbjct: 230 VEIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGL 289

Query: 244 GKTSEIFAKG---------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           G+ +               Q +        G PV+   R   +F  I+         R  
Sbjct: 290 GQLTWGADHPRGTHDVVADQSQAYDLYTRWGVPVSPHNRAVTSFQEILDMIEYYGEHRGD 349

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRTG +TP
Sbjct: 350 IEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTP 409

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ +   TLHN   +K            + + +GD V+V++AG+VIP++V
Sbjct: 410 VAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGVLIGDTVVVRKAGDVIPELV 458

Query: 415 DIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R         F  P FCP C +++         +     RC    +C AQ  ER
Sbjct: 459 GPVLERRKGREDQLREFVMPEFCPSCGAKLA-----PAKEGDKDIRCPNVESCPAQLTER 513

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           +    SR AF+IE LG+Q        E+
Sbjct: 514 VISLASRKAFDIEHLGEQSAIALTNPEE 541



 Score =  197 bits (500), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 15/192 (7%)

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
            +   ++D ++K R+  L R + +L IR +G   AR +A    S     +          
Sbjct: 735 ENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLAAIEKAT-------- 786

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQN-----PRNICAVEALLKEVSPSIGRHEKNVSSEI 647
                L  +  VG  IA+++V ++             + A              ++   +
Sbjct: 787 --IEDLTAIDGVGPEIAESVVNWFAATREPGDWRGATLRAWQAAGVGVDEAETSSLPQTL 844

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
             K +V TG+L+   R  A+E + + G   +  +S+KTD +++G N GSK  KA++LG+ 
Sbjct: 845 AGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKAIKAEELGIP 904

Query: 708 IMNEEQFLFLLQ 719
           ++ E QF  LL+
Sbjct: 905 MLGEIQFAQLLE 916


>gi|284047072|ref|YP_003397412.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684]
 gi|283951293|gb|ADB54037.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684]
          Length = 670

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 170/719 (23%), Positives = 295/719 (41%), Gaps = 72/719 (10%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++  +L  +I +H   Y     P ++D++YDAL+    A+  A P++      + PL++ 
Sbjct: 7   EQARALAAQIDHHRGLY-ARGAPALVDADYDALEDELRALLAASPEVVLD---DNPLDRP 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
                +    + HS P LSLEK    E L  F  R              F + PK+DG  
Sbjct: 63  WAPELVPGQTIRHSRPMLSLEKATTAEQLDAFCAR---------FPGQAFRVTPKLDGIS 113

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I I Y+ G+  Y A RGDG  GE V+   R +     +        +EVRGE  +  + +
Sbjct: 114 IAIVYQDGELEYVATRGDGRDGERVTDKARLVVLGLPLTLGA-AGRVEVRGEAVMLDSIW 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
            A ND       +P  NPR+AA+G     +P                  +       ++ 
Sbjct: 173 RAYNDA---HPDRPLTNPRSAAAGTFVVKSPEACVAEGRTLRF-FAFDLDEAEVSDGDVS 228

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           +++  LGF V + +  A       +   ++ + R    + IDG V ++      +  G  
Sbjct: 229 ERLVALGFEVPDVL-PAADAEQARAAIEQVAARRGEYDFGIDGAVVRLASRRAFEAAGAT 287

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           + +PR  ++ K+  ++ +T L  +   +G+ G + P A+++PV +GG  +T A+LHN   
Sbjct: 288 SSAPRGALAWKYPAEERTTVLRAVTWPVGKIGRVVPRAQVDPVFVGGTTVTFASLHNPRL 347

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           ++            RDIR+GD V + R G+VIP +   +V +R  D      P+ CP C 
Sbjct: 348 VR-----------ERDIRIGDTVRIMRRGDVIPFIAGSVVEQRTGDEVEIELPTHCPSCG 396

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           + +V     +             L C AQ + RL H+ SR A ++EG+G   ++   +  
Sbjct: 397 TELVVRGTGEELW-------CENLQCPAQAVRRLIHWSSRHASDMEGVGNTWIEKLAED- 448

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
                +  P+D + L   Q             G+VS   +  SI++ R + L R +  L 
Sbjct: 449 ---GVLERPSDFYALTVEQLVGY------ERMGEVSANAMVASIDRSRGVGLRRALIGLA 499

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I      +A+ L                I          L  +  +G  +A ++V ++  
Sbjct: 500 IPMASEGVAKRLC---------LAGFERIEEIVERTAEELEAIRDIGPKVAASMVAYFAR 550

Query: 619 PRNICAVEALLKEVSPSIG-------RHEKNVSSEIENKKLVFTGTLQKIQRHKAQ---- 667
           P     + AL                       + ++   +V TG         A+    
Sbjct: 551 PEVQEELCALRAAGVDLDVRDEDRPIEVADAAETPLKGATVVVTGAFAD-PDSGAKVARP 609

Query: 668 ---EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
                + Q GA   + +S  T ++I G N G +K +KA +LGV+++++EQ    L +  
Sbjct: 610 AVVRLLEQAGATSVSSVSATTTMLIAGSNVGAAKTDKAARLGVQVVDQEQAWDWLAEAG 668


>gi|225352232|ref|ZP_03743255.1| hypothetical protein BIFPSEUDO_03848 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157479|gb|EEG70818.1| hypothetical protein BIFPSEUDO_03848 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 909

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 161/509 (31%), Positives = 257/509 (50%), Gaps = 34/509 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + + ++S E A +  + +   +      YY    P+  D+ YDA  R   A+   FP L 
Sbjct: 81  LDVSSISAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARIRCLQALEAQFPSL- 139

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             +    P +++GG  +     V H    +SL+ ++++E+L ++   + R     +   +
Sbjct: 140 --DSAQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSLEELHEWYDGVIRGLDWPETKPL 197

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPE 183
             T E KIDG  + + Y  G       RGDG  GED++  +R I TIP+       +IPE
Sbjct: 198 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVIGEDITLNVRTISTIPQNLAGPEEDIPE 257

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E+RGEV++  +DF  LN E    GR P+ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 258 FVEIRGEVFMRWDDFNTLNKENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 317

Query: 243 LGKTSE--------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
           +G                 Q E     +  G PV+   R+  TF  I+   +     R  
Sbjct: 318 IGTLQWGAKRGADHDAVNNQSEAYGLYKKWGIPVSPHNREVTTFSQILDMIDYYGEHRGD 377

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LLDI +Q+GRTG +TP
Sbjct: 378 IEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVTP 437

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L+PV + G+ ++  TLHN   ++            + + +GD V+V++AG+VIP++V
Sbjct: 438 VAILKPVYVAGSTVSRTTLHNPFEVER-----------KGVLIGDTVVVRKAGDVIPELV 486

Query: 415 DIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
             ++  R         F  PS CP C +++         +     RC    +C AQ  ER
Sbjct: 487 GPVLERREGHEDQLRRFVMPSQCPSCGAQLA-----PAKEGDKDIRCPNVESCPAQLTER 541

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           + +  SR AF+IE LG Q        E+ 
Sbjct: 542 IINLASRKAFDIEHLGDQSAIALTNPEED 570



 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 92/194 (47%), Gaps = 15/194 (7%)

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
              +   + D I+K R+  L R + +L IR +G   AR +A  + S     +        
Sbjct: 722 PAENTRKMLDEIDKARHADLWRVLVALSIRRLGPPTARVIANTFGSLDAIERA------- 774

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-----CAVEALLKEVSPSIGRHEKNVSS 645
                  L ++  +G  IA+++V ++ + +         +EA       +       +  
Sbjct: 775 ---SVDELSQIDGIGPEIAESVVTWFASAKEPGDWRGTVLEAWKAAGVGAEQVEISTLPQ 831

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
            +E K +V TG+L    R  A+E +   G   S  +S+KTD +++G+N G+K  KA++LG
Sbjct: 832 TLEGKTVVVTGSLIDFSRDSAKEAIISRGGRASGSVSKKTDWVVIGENAGAKAAKAEELG 891

Query: 706 VKIMNEEQFLFLLQ 719
           V ++NE+QF  LL+
Sbjct: 892 VPMLNEDQFKILLE 905


>gi|330722364|gb|EGH00218.1| DNA ligase [gamma proteobacterium IMCC2047]
          Length = 394

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 161/418 (38%), Positives = 240/418 (57%), Gaps = 38/418 (9%)

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           + Y+IDG+V+K++   LQ ++G  +R+PRW I++KF  ++  T+LL ++ Q+GRTG +TP
Sbjct: 1   MHYEIDGIVFKLNSLELQNKVGFVSRAPRWAIAYKFPAQEEITQLLGVEFQVGRTGAVTP 60

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VARL+PV +GG  ++NATLHN D I+ L            +R GD V+V+RAG+VIP+VV
Sbjct: 61  VARLQPVFVGGVTVSNATLHNGDEIERL-----------GVRCGDTVVVRRAGDVIPQVV 109

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
            +++ +R  ++    FPS CP+C S V+R          A  RCTGGL C+AQ+ + +KH
Sbjct: 110 QVVLEKRPENSTAIEFPSSCPVCGSDVIRAEGE------AVARCTGGLYCAAQRKQAIKH 163

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           F SR AF+IEGLG + +D     +     I   AD+F LQ         + N+   GD S
Sbjct: 164 FASRKAFDIEGLGDKLVDMLVDQQ----LINSIADLFHLQHE------ALSNLERMGDKS 213

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             NL D++ K +  +L RFI++LGIR VG   A +LA ++       Q            
Sbjct: 214 AQNLLDALQKSKQTTLARFIYALGIREVGEATAANLAHHFADLGALMQAKE--------- 264

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLV 653
              L+ V  VG I+A  I  F+Q P N   +EALL E        +KNV +  +  +  V
Sbjct: 265 -EQLLEVNDVGPIVASHIAHFFQQPHNQEIIEALLAEGIRWPSVDKKNVEAMPLAGQTWV 323

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711
            TGTL+ + R +A+  +  LGA VS  +S KT  ++ G + GSKL KA+ LG+++ +E
Sbjct: 324 LTGTLETLTRDQAKSRLVALGAKVSGSVSAKTHCVVAGASAGSKLTKAESLGIEVRDE 381


>gi|291456400|ref|ZP_06595790.1| DNA ligase, NAD-dependent [Bifidobacterium breve DSM 20213]
 gi|291381677|gb|EFE89195.1| DNA ligase, NAD-dependent [Bifidobacterium breve DSM 20213]
          Length = 930

 Score =  310 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 161/509 (31%), Positives = 259/509 (50%), Gaps = 35/509 (6%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           + +  L+ E A +  + +   +      YY    P+  D+ YDA  R    +  AFP L 
Sbjct: 52  LDVNTLNAEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQKLEAAFPSL- 110

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
             ++P  P +++GG  +     V H    +SL+ +++IE+L+ +   + R     D   +
Sbjct: 111 --DNPQSPTHRVGGSFSNDFTSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPDGKPL 168

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPE 183
             + E KIDG  + + Y  G       RGDG +GED++  +R I +IP        +IP+
Sbjct: 169 PMSCEVKIDGLALNLIYRGGVLEQGLTRGDGVTGEDITLNVRTIGSIPAQLGGPKEDIPD 228

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242
            +E+RGEV++  +DF  LN+E    GR  +ANPRNAA+G LR+ +P    TR L+F+ HG
Sbjct: 229 FVEIRGEVFMRWDDFHTLNNEQEDAGRALFANPRNAAAGSLRQKDPRITATRRLSFYAHG 288

Query: 243 LGKTSEIFAKG---------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293
           LG+ +               Q +        G PV+   R   +FH I+   +     R 
Sbjct: 289 LGQLTWGPDHPRGTHDVIADQSQAYDLYAKWGVPVSPHNRSVTSFHEILDMIDYYGEHRG 348

Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353
            + + +DG+V KVD+  LQ+ LG  +R+PRW I++K+  ++ +T LL+I +Q+GRTG +T
Sbjct: 349 DIEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVT 408

Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413
           PVA L+PV + G+ +   TLHN   +K            + I +GD V+V++AG+VIP++
Sbjct: 409 PVAVLKPVYVAGSTVARTTLHNGFEVKR-----------KGILIGDTVVVRKAGDVIPEL 457

Query: 414 VDIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
           V  ++  R       + F  P FCP C +++         +     RC    +C AQ  E
Sbjct: 458 VGPVLERRKGRESELREFVMPEFCPSCGAKLA-----PAKEGDKDIRCPNVESCPAQLTE 512

Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
           R+    SR AF+IE LG+Q        E+
Sbjct: 513 RVISLASRKAFDIEHLGEQSAIALTNPEE 541



 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 15/192 (7%)

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
            +   ++D ++K R+  L R + +L IR +G   AR +A    S                
Sbjct: 745 ENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLGAIENAT-------- 796

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-----CAVEALLKEVSPSIGRHEKNVSSEI 647
                L  +  VG  IA+++V ++   R         + A               +   +
Sbjct: 797 --VEDLTAIDGVGPEIAESVVNWFAAAREPGDWRGETLRAWQAAGVGVDVAETSTLPQTL 854

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
             K +V TG+L+   R  A+E + + G   +  +S+KTD ++VG+N GSK  KA++LG+ 
Sbjct: 855 AGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVVGENAGSKAAKAEELGIP 914

Query: 708 IMNEEQFLFLLQ 719
           ++NE QF  LL+
Sbjct: 915 MLNEAQFAQLLE 926


>gi|255595065|ref|XP_002536222.1| DNA ligase, NAD-dependent, putative [Ricinus communis]
 gi|223520412|gb|EEF26161.1| DNA ligase, NAD-dependent, putative [Ricinus communis]
          Length = 491

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 191/529 (36%), Positives = 286/529 (54%), Gaps = 41/529 (7%)

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-KTSEIF 250
           ++K DF  +N E+ A G +  ANPRNAA+G LR+L+P    +R L F  +G G       
Sbjct: 1   MNKADFALVNAELAAKGEETKANPRNAAAGSLRQLDPKVTASRRLRFLAYGFGVCEGFEP 60

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A  Q E L  +  +GF +++         GI++++  +K+ R+ LP+DIDG+VYKV+   
Sbjct: 61  ADTQEEQLASLVQMGFEISHTNTVVKGAAGILAHFESVKATRADLPFDIDGVVYKVNSKK 120

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
            Q +LG  +R+PRW I+ KF  ++A TR + I+ Q+GRTG LTPVARLEPV +GG  +TN
Sbjct: 121 QQDELGWNSRTPRWAIALKFPPEEAVTRCIAIEPQVGRTGPLTPVARLEPVFVGGVTVTN 180

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
           ATLHNE  +             +DIR+GD V+V+RAG+VIP++V  +   R      +  
Sbjct: 181 ATLHNEQEVHR-----------KDIRIGDHVIVRRAGDVIPEIVRSLPERRDGTETVYYT 229

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C + V ++ +       AAHRCTGGL C+ Q+L  + HF SR A +IEGLG+  
Sbjct: 230 PAHCPTCGTPVHKEED------TAAHRCTGGLKCADQRLYAITHFASRLALDIEGLGEGT 283

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +    +    A  I  P+ +F L   Q  +      + G G  S   L  +I + R   L
Sbjct: 284 VTKLVE----AGLIERPSHLFALLPSQIAA------LPGEGKNSAAKLVAAIERTRAPEL 333

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI++LGI +VG   A++ A+++LS+  F                 L  +  VG   A 
Sbjct: 334 NRFIYALGIPNVGENSAKNFARHFLSFAAFKAAT----------ADELQALEDVGPTTAA 383

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           ++  F++N  N   VEAL++ V P       + S  +     V TGTL +  R   +  +
Sbjct: 384 SVRAFFENADNAAEVEALVECVQPKDVTVSTD-SQSLTGLTFVITGTLSR-DRESFKATI 441

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              G  VS  +S+KT+ ++ G   G+KL KAQ++GV I++E  F  LL 
Sbjct: 442 EAAGGKVSGSVSKKTNYLLAGAEAGTKLAKAQEMGVTILDEAAFDALLA 490


>gi|297243530|ref|ZP_06927462.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis AMD]
 gi|296888575|gb|EFH27315.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis AMD]
          Length = 922

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 164/483 (33%), Positives = 243/483 (50%), Gaps = 36/483 (7%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P   D+ YDA  R   A+  AFP L   + P  P +++GG  +     V H  
Sbjct: 79  AYYVEDSPTSSDAAYDARMRALSALEAAFPTL---DTPQSPTHRVGGTFSNDFTSVKHPS 135

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
             +SL+ +++IE+L  +   + R  Q  +   +  T E KIDG  + + Y  G       
Sbjct: 136 RMMSLDDVFSIEELHDWYNSVIRDLQWDESQPLPMTCEVKIDGLALNLIYRNGTLEQGLT 195

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
           RGDG +GED++  +R I  IP  L      +IPE +E+RGEV++   DF  LNDE    G
Sbjct: 196 RGDGVTGEDITLNVRTIEAIPTQLHSDNPDDIPEFVEIRGEVFMKWEDFRKLNDEQENAG 255

Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQK-------- 260
           R  +ANPRNAA+G LR+ +P    TR L+FF HGLG+              K        
Sbjct: 256 RVAFANPRNAAAGSLRQKDPRITATRRLSFFAHGLGELRWKENTSHNNSETKFNQSDAYK 315

Query: 261 -MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
             +  G PV+   R+   F  I    +     R+ + + +DG+V KVD+ +LQ QLG  +
Sbjct: 316 LYQQWGIPVSPYTRKVTNFSEIEEMIDYYGKHRANILHALDGIVVKVDDRALQHQLGATS 375

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           R+PRW I++K+  ++ +T L DI +Q+GRTG +TPVA LEPV + G+ I+  TLHN   +
Sbjct: 376 RAPRWAIAYKYPPEEVNTYLKDIIVQVGRTGRVTPVAVLEPVTVAGSTISRTTLHNAYEV 435

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ---PFSFPSFCPI 436
           +            + + +GD V+V++AG+VIP++V  ++  R         F  P +CP 
Sbjct: 436 E-----------HKGVLIGDTVVVRKAGDVIPELVGPVLKAREGRENELRKFVMPEYCPS 484

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +++         +     RC     C AQ  ER+ H  SR AF+IE LG         
Sbjct: 485 CGTKLA-----PAKEGDKDIRCPNVENCPAQLTERIIHLASRQAFDIENLGDNAALALTN 539

Query: 497 SED 499
            ED
Sbjct: 540 PED 542



 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 16/199 (8%)

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
              + + + L +   K +N +L R + +L IR +G   AR +A  + S  N ++      
Sbjct: 715 RPSETTRSMLEEIAQKGKNAALWRVLVALSIRRLGPPTARLIAANFGSLDNISKA----- 769

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQ---NPRNI--CAVEALLKEVSPSIGRHEKNV 643
                    L ++  VG  IAQA+  ++Q   +P N     +++  +           + 
Sbjct: 770 -----SIEELTQIDGVGPEIAQAVYNWFQQAKDPANWQFEVLKSWQEAGVVG-KVEASSF 823

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +  +  K +V TG+LQ   R  A+E +   G   S  +S+ T  +I+G+N GSK  KAQ+
Sbjct: 824 AQTLVGKTIVVTGSLQGFTRDSAKEAIVSRGGKASGSVSKNTYCVILGENAGSKATKAQE 883

Query: 704 LGVKIMNEEQFLFLLQQYN 722
           LG+ ++NE+QF  LL+  N
Sbjct: 884 LGIPMLNEQQFNTLLKTGN 902


>gi|283783245|ref|YP_003373999.1| DNA ligase (NAD(+)) [Gardnerella vaginalis 409-05]
 gi|283441754|gb|ADB14220.1| DNA ligase (NAD(+)) [Gardnerella vaginalis 409-05]
          Length = 962

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 164/483 (33%), Positives = 243/483 (50%), Gaps = 36/483 (7%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P   D+ YDA  R   A+  AFP L   + P  P +++GG  +     V H  
Sbjct: 119 AYYVEDSPTSSDAAYDARMRALSALEAAFPTL---DTPQSPTHRVGGTFSNDFTSVKHPS 175

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
             +SL+ +++IE+L  +   + R  Q  +   +  T E KIDG  + + Y  G       
Sbjct: 176 RMMSLDDVFSIEELHDWYNSVIRDLQWDESQPLPMTCEVKIDGLALNLIYRNGTLEQGLT 235

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
           RGDG +GED++  +R I  IP  L      +IPE +E+RGEV++   DF  LNDE    G
Sbjct: 236 RGDGVTGEDITLNVRTIEAIPTQLHSDNPDDIPEFVEIRGEVFMKWEDFRKLNDEQENAG 295

Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQK-------- 260
           R  +ANPRNAA+G LR+ +P    TR L+FF HGLG+              K        
Sbjct: 296 RVAFANPRNAAAGSLRQKDPRITATRRLSFFAHGLGELRWKENTSHNNSETKFNQSDAYK 355

Query: 261 -MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
             +  G PV+   R+   F  I    +     R+ + + +DG+V KVD+ +LQ QLG  +
Sbjct: 356 LYQQWGIPVSPYTRKVTNFSEIEEMIDYYGKHRANILHALDGIVVKVDDRALQHQLGATS 415

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           R+PRW I++K+  ++ +T L DI +Q+GRTG +TPVA LEPV + G+ I+  TLHN   +
Sbjct: 416 RAPRWAIAYKYPPEEVNTYLKDIIVQVGRTGRVTPVAVLEPVTVAGSTISRTTLHNAYEV 475

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ---PFSFPSFCPI 436
           +            + + +GD V+V++AG+VIP++V  ++  R         F  P +CP 
Sbjct: 476 E-----------HKGVLIGDTVVVRKAGDVIPELVGPVLKAREGRENELRKFVMPEYCPS 524

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +++         +     RC     C AQ  ER+ H  SR AF+IE LG         
Sbjct: 525 CGTKLA-----PAKEGDKDIRCPNVENCPAQLTERIIHLASRQAFDIENLGDNAALALTN 579

Query: 497 SED 499
            ED
Sbjct: 580 PED 582



 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 16/199 (8%)

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
              + + + L +   K +N +L R + +L IR +G   AR +A  + S  N ++      
Sbjct: 755 RPSETTRSMLEEIAQKGKNAALWRVLVALSIRRLGPPTARLIAANFGSLDNISKA----- 809

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQ---NPRNI--CAVEALLKEVSPSIGRHEKNV 643
                    L ++  VG  IAQA+  ++Q   +P N     +++  +           + 
Sbjct: 810 -----SIEELTQIDGVGPEIAQAVYNWFQQAKDPANWQFEVLKSWQEAGVVG-KVEASSF 863

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +  +  K +V TG+LQ   R  A+E +   G   S  +S+ T  +I+G+N GSK  KAQ+
Sbjct: 864 AQTLVGKTIVVTGSLQGFTRDSAKEAIVSRGGKASGSVSKNTYCVILGENAGSKATKAQE 923

Query: 704 LGVKIMNEEQFLFLLQQYN 722
           LG+ ++NE+QF  LL+  N
Sbjct: 924 LGIPMLNEQQFNTLLKTGN 942


>gi|298252820|ref|ZP_06976614.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis 5-1]
 gi|297533184|gb|EFH72068.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis 5-1]
          Length = 962

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 164/483 (33%), Positives = 243/483 (50%), Gaps = 36/483 (7%)

Query: 34  CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93
            YY    P   D+ YDA  R   A+  AFP L   + P  P +++GG  +     V H  
Sbjct: 119 AYYVEDSPTSSDAAYDARMRALSALEAAFPTL---DTPQSPTHRVGGTFSNDFTSVKHPS 175

Query: 94  PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153
             +SL+ +++IE+L  +   + R  Q  +   +  T E KIDG  + + Y  G       
Sbjct: 176 RMMSLDDVFSIEELHDWYNSVIRDLQWDESKPLPMTCEVKIDGLALNLIYRNGTLEQGLT 235

Query: 154 RGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
           RGDG +GED++  +R I  IP  L      +IPE +E+RGEV++   DF  LNDE    G
Sbjct: 236 RGDGVTGEDITLNVRTIEAIPTQLHSDNPDDIPEFVEIRGEVFMKWEDFRKLNDEQENAG 295

Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQK-------- 260
           R  +ANPRNAA+G LR+ +P    TR L+FF HGLG+              K        
Sbjct: 296 RVAFANPRNAAAGSLRQKDPRITATRRLSFFAHGLGELRWKENTSHNNSETKFNQSDAYK 355

Query: 261 -MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
             +  G PV+   R+   F  I    +     R+ + + +DG+V KVD+ +LQ QLG  +
Sbjct: 356 LYQQWGIPVSPYTRKVTNFSEIEEMIDYYGKHRANILHALDGIVVKVDDRALQHQLGATS 415

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           R+PRW I++K+  ++ +T L DI +Q+GRTG +TPVA LEPV + G+ I+  TLHN   +
Sbjct: 416 RAPRWAIAYKYPPEEVNTYLKDIIVQVGRTGRVTPVAVLEPVTVAGSTISRTTLHNAYEV 475

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ---PFSFPSFCPI 436
           +            + + +GD V+V++AG+VIP++V  ++  R         F  P +CP 
Sbjct: 476 E-----------HKGVLIGDTVVVRKAGDVIPELVGPVLKAREGRENELRKFVMPEYCPS 524

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C +++         +     RC     C AQ  ER+ H  SR AF+IE LG         
Sbjct: 525 CGTKLA-----PAKEGDKDIRCPNVENCPAQLTERIIHLASRQAFDIENLGDNAALALTN 579

Query: 497 SED 499
            ED
Sbjct: 580 PED 582



 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 16/199 (8%)

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
              + + + L +   K +N +L R + +L IR +G   AR +A  + S  N ++      
Sbjct: 755 RPSETTRSMLEEIAQKGKNAALWRVLVALSIRRLGPPTARLIAANFGSLDNISKA----- 809

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQ---NPRNI--CAVEALLKEVSPSIGRHEKNV 643
                    L ++  VG  IAQA+  ++Q   +P N     +++  +           + 
Sbjct: 810 -----SIEELTQIDGVGPEIAQAVYNWFQQAKDPANWQFEVLKSWQEAGVVG-KVETSSF 863

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
           +  +  K +V TG+LQ   R  A+E +   G   S  +S+ T  +I+G+N GSK  KAQ+
Sbjct: 864 AQTLVGKTIVVTGSLQGFTRDSAKEAIVSRGGKASGSVSKNTYCVILGENAGSKATKAQE 923

Query: 704 LGVKIMNEEQFLFLLQQYN 722
           LG+ ++NE+QF  LL+  N
Sbjct: 924 LGIPMLNEQQFNALLKTGN 942


>gi|330879787|gb|EGH13936.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 347

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 124/350 (35%), Positives = 191/350 (54%), Gaps = 11/350 (3%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIF 127
           P  ++G     +  +V H +P LSL   +   D+ +F  R+         +       + 
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQ 117

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186
           ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L     P+++E
Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLE 177

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245
           VRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F  +GLG+
Sbjct: 178 VRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQ 237

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           TS   A     +L+ ++  G PV++ ++ AN     + YY ++   R TL Y+IDG+V+K
Sbjct: 238 TSAEIADTHIGVLETLKKWGMPVSHELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFK 297

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           V+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPV
Sbjct: 298 VNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPV 347


>gi|225631070|ref|ZP_03787806.1| DNA ligase [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225591237|gb|EEH12383.1| DNA ligase [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 508

 Score =  304 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 210/535 (39%), Positives = 309/535 (57%), Gaps = 36/535 (6%)

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243
            +EVRGE+YIS +DFL LN+         +ANPRNAA+G L++L+            +  
Sbjct: 4   RLEVRGEIYISNSDFLKLNEN------DEFANPRNAAAGSLKQLDANITASRP--LRYFA 55

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                   K Q E+L K+  LGF VN      ++  G++ +YNE+ + R  L YDIDG+V
Sbjct: 56  YSLIGGAEKSQSEVLNKLEALGFCVNEHQSLTSSLDGMLKFYNEVYNCRYNLDYDIDGIV 115

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           YKV++  LQ +LG   ++PR  +++KF+   A T+L  I IQ+GRTG+LTPVA L PVN+
Sbjct: 116 YKVNDLVLQNRLGNTHKAPRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNV 175

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
           GG L++ A+LHN+D IK            +DIR GD V +KRAG+VIP++V++  + R P
Sbjct: 176 GGVLVSRASLHNQDEIKR-----------KDIREGDIVTIKRAGDVIPQIVEVSRDSRLP 224

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +   F FP  CP C S+V +          AA RC    AC AQ +E+LKHFVS+DAF+I
Sbjct: 225 NTPEFVFPEVCPECGSKVRQVEGE------AAVRCPEEFACKAQIIEKLKHFVSKDAFDI 278

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            GLG +Q++FF+        I+   DIFTL+ R       +E   G+G  S+ +L ++I 
Sbjct: 279 VGLGDKQIEFFYD----LGLIKQIPDIFTLEERL--DEFNLEEQSGWGKKSIAHLLNAIQ 332

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
            RR I+L+RFIFSLGIR +G   A  LA YY+SY N+   +  +    + D   L+ +  
Sbjct: 333 SRRVITLDRFIFSLGIRFIGQVAAELLADYYVSYDNWYNSMIEL----SSDNTELVGIDG 388

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +G  +A+++  F+    NI  +  L   +         + S     K +VFTG L  + R
Sbjct: 389 IGKKVAESLESFFSKEHNIKMLNDLTACLQILPVSSNSSNSVLNN-KIIVFTGKLLAMSR 447

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +A+     LGA VS+ LS KTD +I G+ PGSK +KA +LGV+I++E+Q+  ++
Sbjct: 448 GEAKVRAKTLGAKVSSHLSAKTDYLIAGEKPGSKYKKAVELGVEILDEDQWHKVI 502


>gi|4235378|gb|AAD13192.1| NAD-dependent DNA ligase [Thermus filiformis]
          Length = 537

 Score =  304 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 191/583 (32%), Positives = 302/583 (51%), Gaps = 49/583 (8%)

Query: 61  AFPDLARSEDPNGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119
            FP+      P+ P  ++G      +   V H     SL+  +  E++  F  R+ R   
Sbjct: 1   RFPEFK---SPDSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLERALG 57

Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
           +K      +T+E K+DG  + + YE+G  V+ A RGDG  GE+V+  +  IPTIPR L  
Sbjct: 58  RK--RPFLYTVEHKVDGLSVNLYYEEGVLVFGATRGDGEVGEEVTQNLLTIPTIPRRLKG 115

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
             P+ +EVRGEVY+    FL LN+E+   G K + NPRNAA+G LR+ +P     R L  
Sbjct: 116 V-PDRLEVRGEVYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRA 174

Query: 239 FVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
             + LG   E    K QYE+L  ++  GFPV +G  +A    G+   Y    + R  LP+
Sbjct: 175 TFYALGLGLEESGLKSQYELLLWLKEKGFPVEHGYEKALGAEGVEEVYRRFLAQRHALPF 234

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           + DG+V K+D+ +L ++LG  AR+PR+ +++KF  ++  TRLLD+  Q+GRTG +TPV  
Sbjct: 235 EADGVVVKLDDLALWRELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGV 294

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV I G+ ++  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++
Sbjct: 295 LEPVFIEGSEVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVL 343

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
              R  + +P  +P  CP C  R+V++           HRC   L C A++ E ++H+ S
Sbjct: 344 KERRTGEERPIRWPETCPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYAS 394

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A +IEGLG++ ++   +       +R  AD++ L++           +   G+ S  N
Sbjct: 395 RKAMDIEGLGEKLIERLLEK----GLVRDVADLYHLRKEDLLG------LERMGEKSAQN 444

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           L   I + ++  LER +++LG+  VG  +AR+LA+ + +     +     +    +    
Sbjct: 445 LLRQIEESKHRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELLEVEEVGEL 504

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
                      A+AI+E  ++P     V  L +       + E
Sbjct: 505 ----------TARAILETLKDPAFRDLVRRLKEAGVSMESKEE 537


>gi|294790698|ref|ZP_06755856.1| DNA ligase, NAD-dependent [Scardovia inopinata F0304]
 gi|294458595|gb|EFG26948.1| DNA ligase, NAD-dependent [Scardovia inopinata F0304]
          Length = 815

 Score =  304 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 155/510 (30%), Positives = 263/510 (51%), Gaps = 32/510 (6%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           +K + + +  L   QA    + +   +      YY    PI  D+ YD   +    +   
Sbjct: 18  QKLKDLNVADLDTSQAAHLWAKVASWVEDDQLAYYVNDSPISSDAAYDERMKTLQRLEAH 77

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
           FP L   ++P    +++GG  +     V H  P +SL+ ++++++L+ +   +    +  
Sbjct: 78  FPQL---DNPQSLTHRVGGTFSNDFASVRHPSPMMSLDDVFSLQELKSWYQGVRDDLEWP 134

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-- 179
               +  T E KIDG  + + Y KG       RGDG  GED++  +R I +IP  L+   
Sbjct: 135 SSQPLPMTCEVKIDGLALNLIYRKGILEQGLTRGDGIVGEDITMNVRTISSIPTQLTGKA 194

Query: 180 -NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237
            +IP+++E+RGEV++  +DF  LND+    G+ P+ANPRNAA+G LR+ +P    +R+L+
Sbjct: 195 EDIPDLVEIRGEVFMRFDDFTRLNDQAEREGKAPFANPRNAAAGSLRQKDPRITASRHLS 254

Query: 238 FFVHGLGKTSEIFAKGQYEMLQK------MRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291
           F+ HG+G            + ++          G PV+   RQA +F  I    +     
Sbjct: 255 FYAHGIGSLVWPQGSNHPSIERQSQAYDLYAAWGIPVSTHTRQARSFTDITDMISYYGEH 314

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
           R ++ + +DG+V K+D+ +LQ++LG  AR+PRW  ++K+  ++ +T L+DI +Q+GRTG 
Sbjct: 315 RYSIEHALDGIVVKIDDLALQRRLGSTARAPRWATAYKYPPEEVNTDLIDITVQVGRTGR 374

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVA L+PV + G+ ++  TLHN   ++            + I +GD V+V++AG+VIP
Sbjct: 375 VTPVAHLKPVKVAGSTVSRTTLHNAYEVER-----------KGILIGDLVVVRKAGDVIP 423

Query: 412 KVVDII---VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           ++V  +     +R    +PF  P  CP C + +  +      +     RC    +C AQ 
Sbjct: 424 ELVGPVVAARPDRKSQLRPFLMPKTCPSCGALLAPE-----KEGDKDIRCPNVESCPAQL 478

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
             R+ H  SR AF+IE LG+Q        E
Sbjct: 479 ANRVLHLASRQAFDIEHLGEQSALALTNPE 508



 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 15/197 (7%)

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
                 +   +++  +K +   L R + +L IRHVGA  AR L++ + + Q  +Q     
Sbjct: 622 DAQPSRTTLAMFEEFDKAKRADLWRVLVALSIRHVGAPTARLLSRKFKTLQALSQA---- 677

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ-----NPRNICAVEALLKEVSPSIGRHEKN 642
                     L++V  VG+ IAQ+I  ++             + +            E  
Sbjct: 678 ------SVEDLLQVDGVGEEIAQSIERWFSHARDPQDWRGKILRSWTAAGIGQQAAEENT 731

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
               +  K +V TGTL+   R  A+E + + G   S  +S+KT  ++VG + GSK  KAQ
Sbjct: 732 AEQTLTGKTVVVTGTLEDFSRESAKEAIEERGGKASGSVSKKTSYVVVGASAGSKAVKAQ 791

Query: 703 QLGVKIMNEEQFLFLLQ 719
           +LG+ +++E+QF  LL+
Sbjct: 792 ELGIPMLDEDQFKALLE 808


>gi|308235729|ref|ZP_07666466.1| DNA ligase (NAD(+)) [Gardnerella vaginalis ATCC 14018]
 gi|311114720|ref|YP_003985941.1| NAD-dependent DNA ligase LigA [Gardnerella vaginalis ATCC 14019]
 gi|310946214|gb|ADP38918.1| NAD-dependent DNA ligase LigA [Gardnerella vaginalis ATCC 14019]
          Length = 960

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 163/531 (30%), Positives = 262/531 (49%), Gaps = 51/531 (9%)

Query: 1   MKKRQLIPIEA----------LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDA 50
           + K +   ++A          L+ EQA +  + L          YY    P   D+ YD 
Sbjct: 78  ISKLEPTDVDAIALSKLEPSLLTSEQAARLWAKLAAWAQSDQIAYYVDDSPSSSDAAYDT 137

Query: 51  LKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKF 110
             R   ++   FP L   + P  P +++GG  +     V H    +SL+ ++++E+L+ +
Sbjct: 138 RMRVLSSLESTFPIL---DTPQSPTHRVGGTFSNDFASVKHPSRMMSLDDVFSLEELKSW 194

Query: 111 ITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI 170
              I R  +   +  +  T E KIDG  + + Y  G       RGDG +GED+S  +R I
Sbjct: 195 YDSIIRDLKWPQNKPLPMTCEVKIDGLALNLIYRNGTLEQGLTRGDGVTGEDISLNVRTI 254

Query: 171 PTIP----RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR 226
             IP       S +IPE +E+RGEV++   DF  LN E   +G+  +ANPRNAA+G LR+
Sbjct: 255 EEIPTQLKCENSDDIPEFVEIRGEVFMKWADFRKLNIEQEDLGKPAFANPRNAAAGSLRQ 314

Query: 227 LNPT-DITRYLNFFVHGLGKTSEIF--------------AKGQYEMLQKMRCLGFPVNNG 271
            +P    TR L+F  HGLG                    +  Q +  +  +  G PV+  
Sbjct: 315 KDPRITATRRLSFIAHGLGDLKWKDSVRNDSEHKSHKQTSFNQSDAYELYKKWGIPVSPY 374

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
            R+  +F  I          R+++ + +DG+V KVD+ +LQ++LG  +R+PRW I++K+ 
Sbjct: 375 TRKVTSFEQIEDMIEYYGEHRNSIIHALDGIVVKVDDRALQRELGSTSRAPRWAIAYKYP 434

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            ++ +T L DI +Q+GRTG +TPVA L+PV + G+ I+  TLHN   ++           
Sbjct: 435 PEEVNTVLKDIVVQVGRTGRVTPVAVLDPVTVAGSTISRTTLHNPYEVE----------- 483

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPK 448
            + + +GD V+V++AG+VIP++V  ++  R  +    + F  P +CP C S++       
Sbjct: 484 HKGVLIGDTVVVRKAGDVIPELVGPVLKYRDGNESKLRKFVMPEYCPSCGSKLA-----P 538

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
             +     RC     C AQ  ER+ +  SR AF+IE LG+         ED
Sbjct: 539 AKEGDKDIRCPNVENCPAQLTERIINLASRHAFDIENLGESSALALTNPED 589



 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 96/198 (48%), Gaps = 17/198 (8%)

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
              + +   L +   K ++ +L R + +L IR +G   AR +A  + S +N ++      
Sbjct: 753 RPSETTRAMLEEIAQKGKSATLWRVLVALSIRRLGPPTARLIAARFGSIENISKA----- 807

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-----CAVEALLKEVSP--SIGRHEK 641
                    L ++  VG  IAQA+ ++++  +N        +    +      S   +  
Sbjct: 808 -----SVEDLTQIDGVGPEIAQAVYDWFEKSKNPQDWRSEVLRKWNEAGVVGSSDSSNAD 862

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701
           ++   +  K +V TG+L+   R  A+E ++  G   ++ +S+KT  +IVG+N GSK  KA
Sbjct: 863 SIEQTLSGKTVVVTGSLEGFTRDSAKEAISSRGGKAASSVSKKTYCVIVGENAGSKATKA 922

Query: 702 QQLGVKIMNEEQFLFLLQ 719
           ++LG+ +++E QF  LL 
Sbjct: 923 EELGIPMLDENQFKILLN 940


>gi|261337889|ref|ZP_05965773.1| DNA ligase, NAD-dependent [Bifidobacterium gallicum DSM 20093]
 gi|270277364|gb|EFA23218.1| DNA ligase, NAD-dependent [Bifidobacterium gallicum DSM 20093]
          Length = 906

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 162/517 (31%), Positives = 265/517 (51%), Gaps = 38/517 (7%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           K + + + AL  E+AR     +   +      YY  S PI  D+ YDA  R  +A+  A+
Sbjct: 27  KLETVDVPALGAERARTLWRKVASWVEADQVAYYIDSAPISSDAAYDARLRFLEAMERAY 86

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P+L   + P+ P +++GG  +     V      LSL+ +++I++LR++   +    Q  +
Sbjct: 87  PEL---DVPSSPTHRVGGSFSNEFVSVPQPSQMLSLDDVFSIQELREWYEGVRADLQWPE 143

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---- 178
              +  T E KIDG  + + Y  G       RGDG  GED++  +R I +IP  L+    
Sbjct: 144 GERLPMTCEVKIDGLALNLIYRDGVLSQGLTRGDGKIGEDITLNVRTISSIPGNLTEAGA 203

Query: 179 --LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRY 235
              +IP ++E+RGEV++  + F ALN+     G+ P+ANPRNAA+G LR+ +P     R+
Sbjct: 204 SLGDIPHMVEIRGEVFMRWDTFHALNERNEQDGKTPFANPRNAAAGSLRQKDPRITAERH 263

Query: 236 LNFFVHGLGKTSE---------IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYN 286
           L+F+ HG+G                  Q +     +  G PV+   R   TF  I+   +
Sbjct: 264 LSFYAHGIGTLDWGEGKPVDAVDVVHDQSQAYDLYQRWGIPVSPHNRMVGTFDEILDMID 323

Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQI 346
                R  + + +DG+V KVD+ +LQ++LG+ +R+PRW I++K+  ++  T+L DI +++
Sbjct: 324 YYGQHRDDIEHPLDGIVVKVDDLALQRRLGQTSRAPRWAIAYKYPPEEVHTKLRDIIVEV 383

Query: 347 GRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRA 406
           GRTG +TP A L+PV + G+ ++  TLHN   +K            + I +GD V+V++A
Sbjct: 384 GRTGRITPAAVLDPVYVAGSTVSRTTLHNGYEVKR-----------KGILIGDIVVVRKA 432

Query: 407 GEVIPKVVDIIVNERHPDAQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463
           G+VIP++V  ++  R         F  P+ CP C + +         +     RC    +
Sbjct: 433 GDVIPELVGPVIEARKGHEDQLREFQMPTTCPSCGATL-----EYDMEGGKDLRCPNHES 487

Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           C AQ  ER+ +  SR AF+IE LG+Q        ED 
Sbjct: 488 CPAQLTERIINMGSRKAFDIEQLGEQSAVALTNPEDQ 524



 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 99/209 (47%), Gaps = 15/209 (7%)

Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575
           ++    T ++        +  +L + I   ++  L+R + +L IRHVG   AR +A+ + 
Sbjct: 692 KRVRGETSVQPQYVCPSETTRSLLEEIEHAKHAELDRVLVALSIRHVGPPTARLIAQRFG 751

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP-----RNICAVEALLK 630
           +                     L  VP +G  +AQAI++++ +       +   +     
Sbjct: 752 TLDALMHASK----------DELESVPGIGSEVAQAILDWFADADDPTSWHGSILARWKA 801

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
                      ++   +E K +V TG+LQ+  R  A+E +   G   +  +S+KTD +++
Sbjct: 802 AGVEMKAPESSSLPKTLEGKTVVVTGSLQQFTRDSAKEAIVNRGGKAAGSVSKKTDYVVI 861

Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G+  GSK +KA++LG+ +++E QF+ LL+
Sbjct: 862 GEAAGSKAKKAEELGIPMLDEAQFVHLLE 890


>gi|302538378|ref|ZP_07290720.1| DNA ligase, NAD-dependent [Streptomyces sp. C]
 gi|302447273|gb|EFL19089.1| DNA ligase, NAD-dependent [Streptomyces sp. C]
          Length = 699

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 189/736 (25%), Positives = 304/736 (41%), Gaps = 81/736 (11%)

Query: 12  LSIEQA-----RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           ++I  A     R E +            YY      + D+ +D L     A   A+P+  
Sbjct: 15  MTITTASALADRDEYADAIATAVKASAAYYGSGGSPLDDASFDLLVSLIQAYEAAYPEHV 74

Query: 67  RSEDPNGPLNKI-GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
              DP  P  K+ GG +     +V H+   LSL   +  +DL  +   + R         
Sbjct: 75  ---DPASPTGKVAGGAVAGG--EVAHTAAMLSLANAFGPQDLLDWEASLVRRLGGPVTGG 129

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
             + +EPK+DG  +  RY  G+ V    RGDG SGEDVS  I  I  +P  L L +    
Sbjct: 130 --YAVEPKLDGASLAARYRAGRLVQLVTRGDGTSGEDVSHAIGTIVGLP--LELAVEATF 185

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGL 243
           EVRGEV ++   F   N      G  P++N RN A+G LR           +  F    L
Sbjct: 186 EVRGEVLLTAEQFERANRTRAEHGAGPFSNARNGAAGTLRAKGRAYTVEMSFWAFAAVEL 245

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGV----RQANTFHGIVSYYNEMKSIRSTLPYDI 299
              + +      E++  +   G             A T  G     + +  +R+ LP+ I
Sbjct: 246 EGGTALPGTTHSEVMAYVAAAGVRTAADTAAGLTVAATAAGAQEQVDRIAGMRAGLPFGI 305

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V K+D  + Q   G  +R P W  ++K A  +  TRLLD+   +GRTG+L P A LE
Sbjct: 306 DGVVVKLDSLAEQAAAGTGSRHPHWATAYKLAAVERRTRLLDVTWAVGRTGVLAPTAVLE 365

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G+++ +ATLHN   I             R + +GD V V +AG+VIP+V   +V 
Sbjct: 366 PVEVDGSVVRHATLHNPADIAR-----------RGLLIGDTVTVYKAGDVIPRVEAPVVE 414

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
            R    +P   P  CP CQ  +         +     RC         ++  + +   RD
Sbjct: 415 LRTGAERPVVVPEVCPGCQGEID--------RSQERWRC--AQPADCGRIAAILYAAGRD 464

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
             +I+GLG++ +    + E     +R  AD+FTL                  +     L 
Sbjct: 465 QLDIDGLGERYVRALVEEEG----VRDVADLFTLD-------PAALARAAGSEKRAVKLA 513

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           + I   + + L R   +LG+   G  ++R +A+++ + +         +           
Sbjct: 514 ERIEAAKALPLSRVFCALGVVGTGRGMSRRIARHFGTMEAVRAADAAAMTA--------- 564

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-------EKNVSSEIENKKL 652
            V LVG+  A AIV   Q       ++ L       +           +  +  +  + +
Sbjct: 565 -VELVGETKAAAIVA--QVAELGPVIDKLAAAGVRPVEPQVPAAAPAGEAEAGPLAGQNV 621

Query: 653 VFTGTLQK-----IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
           V TG +         R + +E + + G   S  +S KT +++ G+  GSK+ KA+  G++
Sbjct: 622 VVTGKMTGALAAYDTRDRVRELIERAGGRSSGSISGKTTLLVAGEKAGSKVAKAEAAGIE 681

Query: 708 IMNEEQF----LFLLQ 719
           I+ EE F      LL+
Sbjct: 682 ILGEEAFAVRIAALLE 697


>gi|320537878|ref|ZP_08037793.1| DNA ligase, NAD-dependent [Treponema phagedenis F0421]
 gi|320145297|gb|EFW36998.1| DNA ligase, NAD-dependent [Treponema phagedenis F0421]
          Length = 648

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 165/717 (23%), Positives = 293/717 (40%), Gaps = 93/717 (12%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
            LE+ I YH D YY      I DSE+DAL     A+     +L  +              
Sbjct: 9   ELEKLIRYHQDLYYNKEA-EIPDSEFDALWDELRALEPEN-ELFFTVPKES--------- 57

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
           +    K +H IP  S EK  N E    +  ++             F ++ K+DG  + ++
Sbjct: 58  SDGFPKASHIIPMGSQEKAANPEAFTAWALKM---------PFTQFLVQYKLDGASLELQ 108

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIP------TIPRVLSLNIPEIIEVRGEVYISKN 196
           YE+G+FV A  RGDG  G+D++A +R +             +   P    +RGEV ++K 
Sbjct: 109 YERGRFVRAVTRGDGKIGDDITANVRKMQGVVSELQGESAPAGAQPFSGGIRGEVLMTKE 168

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
                            AN RNAA+G+++R + +     L      +  + E    G   
Sbjct: 169 IHKKFYA--------DKANCRNAANGLMKRKDGSGSEHLLVICYDAVQGSPEKPFTGTAP 220

Query: 257 MLQKMRCLGFPVNN-----GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              ++  L +   N      ++  N+   ++ +   +  IR +LPYDIDGLV K +    
Sbjct: 221 FSTELEKLAWLKRNGFSTVEIQVCNSIQEVIDWRAHVMDIRESLPYDIDGLVIKNNLID- 279

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
                     P   I+ KF+ ++A T L +++         TP+A  +PV + G  +  A
Sbjct: 280 --PDDVSRPRPEKQIAFKFSLEEAITTLREVEWSES-GATYTPIAITDPVRLAGTTVKRA 336

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
            L N + I  +           ++++G +V++ + GE+IPK+  ++ N    +      P
Sbjct: 337 NLANPNMITDM-----------NLKIGSKVVITKRGEIIPKIETLVENT--DECTEIPMP 383

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           + C  C S ++ +                  AC      R++ +++    +I   G   +
Sbjct: 384 TVCGTCGSSLLNEG---------TRLFCPNAACPKLIHHRIEKWIA--TLDIRDFGINLI 432

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
              F S      +    D++TL      S      I   G++S   ++ +++ ++ ISLE
Sbjct: 433 QRLFDSNK----VNSIVDLYTLTVEDLAS------IERMGEISAKKVHSALHAKKEISLE 482

Query: 552 RFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            FI    I  +G  +   L +  + +     +           D      V   G+++AQ
Sbjct: 483 TFIAGFDIDGIGVTMVEKLTQAGFNTLDKLFEA----------DEQKFSTVYQFGEVLAQ 532

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEY 669
            +V   Q  +    + AL+++    I        +  +      FTG L  I+R +A++ 
Sbjct: 533 NLVRGLQTLK--AEMTALIEKGFIPIKPPAAPDENAPLHGMSFCFTGELTAIKRSEAEQL 590

Query: 670 VTQLGAVVSAILSRKTDIIIVG-DNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           V + G  V + +++    ++      GS K +KAQQLG  I+ EE F  LLQ+ + T
Sbjct: 591 VKEKGGSVKSSVTKGLSYLVTNTPESGSAKNKKAQQLGTAIITEEAFFALLQKEHKT 647


>gi|328947954|ref|YP_004365291.1| DNA ligase [Treponema succinifaciens DSM 2489]
 gi|328448278|gb|AEB13994.1| DNA ligase [Treponema succinifaciens DSM 2489]
          Length = 651

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 149/707 (21%), Positives = 285/707 (40%), Gaps = 83/707 (11%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           K +S LE+ I  +   YY   +  I D+E+D L     ++  A P L          +K+
Sbjct: 23  KRISELEKLIEKYQASYYN-GEAEISDAEFDKLWDELKSLDSANPIL----------HKV 71

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           G + + +  K  H +P  S EK    E+   +  +          +   + +E K+DG  
Sbjct: 72  GAD-SGNFQKSPHVMPMGSQEKAATPEEFLDWAKK---------HDYSEYLVEYKLDGAS 121

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           + ++Y  G F+ A  RGDG  G+ ++A  + +  + + L         +RGEV ++    
Sbjct: 122 LELQYSDGIFLRAVTRGDGTVGDVITANAKKMQGVVQELKEKFTG--GIRGEVIMTHQVH 179

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
                          AN RNAA+G+++R +                   +     +   L
Sbjct: 180 EKFFS--------DKANCRNAANGLMKRKDGEGSENLTLITYDVWASEGKQPFNDEEGKL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             ++  GF     ++   +   ++ Y + +  +R  L YDIDGLV K      +      
Sbjct: 232 DFLQRNGF-NVVPLKICKSTQEVIDYRSSVMELRKNLDYDIDGLVVKERAVDHED---AL 287

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
              P   I+ KF+ ++A + + +I+         TPVA  +PV++ G  +  A+L N + 
Sbjct: 288 RDRPDRQIAFKFSLEEAVSIVRNIEWNE-TGATYTPVAVFDPVDLNGTTVKRASLVNPNL 346

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           I+ L           ++++G  V+V + GE+IPK+V ++  +   +      P  C  C 
Sbjct: 347 IRAL-----------NVKIGSHVVVVKRGEIIPKIVSVLPEQ--ENLPSVKIPEKCACCG 393

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           + ++ +             C           + LK     +  +I  LG+  +   F+++
Sbjct: 394 TSLIDE--------GTRLFCPNKNCEKRILHQLLKWI---NVIDIRDLGETLITSLFETK 442

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS--VTNLYDSINKRRNISLERFIFS 556
                +R  +D+++L              +     S     ++ SI  RR I L +FI  
Sbjct: 443 K----VRSISDLYSLTASDLVPYFLNSESMEKEKKSLGAEKVFASIQSRRKIPLAKFIAG 498

Query: 557 LGIRHVGAEIAR-SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
             I  +G  +    +A  + + Q                   +  V    + +A  +VE 
Sbjct: 499 FDIEGIGETVVETLIAGGFNTLQKIFDAKE----------EEIAGVYRFAETLAHTLVEG 548

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            Q   N   +++L+   + S+         ++  K   FTG L  ++R  AQ  V Q G 
Sbjct: 549 IQE--NREEMQSLVSSGTISVIEGAAQ--GKLAGKSFCFTGELVSMKRQDAQNLVKQNGG 604

Query: 676 VVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            V + + +    ++  D  +  SK +KA +LG+ +++E++FL L++ 
Sbjct: 605 AVKSSVVKGLSFLVTNDTSSGSSKNKKAMELGIPVIDEKEFLALIKD 651


>gi|242279308|ref|YP_002991437.1| DNA ligase (NAD(+)) [Desulfovibrio salexigens DSM 2638]
 gi|242122202|gb|ACS79898.1| DNA ligase (NAD(+)) [Desulfovibrio salexigens DSM 2638]
          Length = 614

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 157/710 (22%), Positives = 276/710 (38%), Gaps = 102/710 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   KE+  L   +  H++ Y +   P I D+ YD L  +   +    P L   E P  
Sbjct: 1   MKNKNKEIKDLVALLEKHNEAY-RRGMPTISDARYDELTEQLRDLDPENPFLTNVE-PEN 58

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
              K+         +V H  P LS EK +  E+L +F++R+ +  +      + + + PK
Sbjct: 59  FSEKV---------EVRHPRPMLSTEKAYTTEELERFVSRVEKEAKAMGIKEVTYRITPK 109

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG       + GK    A RG+G  G ++S+               +    +  GE+  
Sbjct: 110 LDGLAAR---DDGKVF--ATRGNGEVGYEISSAFTKGVVA-------VGGRGQGVGEIVC 157

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
           S   F              + +PRN   GI+      + ++                   
Sbjct: 158 SLEYFDEHLAN-------SFEHPRNMVVGIITSDKVNEASKQAL---------------- 194

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM-KSIRSTLPYDIDGLVYKVDEFSLQ 312
                Q       P +   ++      +VS   E+   +     Y +DG+V +V + +LQ
Sbjct: 195 -----QDEAVRFVPYSTLPKKVVNGEELVSRVWEITDELWEAADYPLDGMVAEVTDTALQ 249

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  A   RW I+ K   + A T +  I  Q+GR G +TPV  ++PV++ GA I N T
Sbjct: 250 ERLGATAHHYRWQIAIKKKGESAVTEVEGIRWQVGRMGAVTPVMEVKPVSVSGATIRNVT 309

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
            HN   ++              I +G  + + R+GEVIPK+ ++I       AQ    P+
Sbjct: 310 AHNAGMLRDQS-----------IGIGATIRIIRSGEVIPKLEEVIKP-----AQEVELPA 353

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +    +                +C A+  +RL+++                D
Sbjct: 354 ECPSCGAELFWQND---------FLKCPDFSCPARVEQRLEYWFKTLGNA---------D 395

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
           +F K             + ++    +    K+             LY  I+K +     R
Sbjct: 396 WFGKKTIAKLVKAGHNSLESVYTMAEDDFQKLGFGPVQSTNLAEALY--ISKTKETDDWR 453

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           F+ + GI  +G   +R L  Y+            +    N     LI +   GDI + ++
Sbjct: 454 FLAAFGIPDLGKADSRKLLGYFK-----------LEDVVNVKQEQLIELHGFGDITSHSV 502

Query: 613 VEFYQ--NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
            E         +  +E         +    +++ S I  K +VFTG +++  R   Q   
Sbjct: 503 TEGIAAIKETILHMLEFDFNLRRTPLVSETESMESPITGKGIVFTGKMEQGSREDMQAMA 562

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            +LGA V   ++ KTD ++ G   G  K+E A+  GV+IM E +F+ ++ 
Sbjct: 563 RRLGAKVQTSVTGKTDFLVCGSKVGAKKIESAKAKGVEIMKESEFMDIVN 612


>gi|4235376|gb|AAD13191.1| NAD-dependent DNA ligase [Thermus filiformis]
          Length = 546

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 186/591 (31%), Positives = 294/591 (49%), Gaps = 48/591 (8%)

Query: 72  NGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
           + P  ++G      +   V H     SL+  +  E++  F  R+ R   +K      +T+
Sbjct: 1   DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLDRALGRK--RPFLYTV 58

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           E K+DG  + + YE+G  V+ A RGD             IPTIPR L    P+ +EVRGE
Sbjct: 59  EHKVDGLSVNLYYEEGVLVFGATRGDXXXXXXXXXXXXTIPTIPRRLKGV-PDRLEVRGE 117

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
           VY+    FL LN+E+   G K + NPRNAA+G LR+ +P     R L    + LG   E 
Sbjct: 118 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLEE 177

Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              K QYE+L  ++  GFPV +G  +A    G+   Y      R  LP++ DG+V K+D+
Sbjct: 178 SGLKSQYELLLWLKEKGFPVEHGYEKALGAEGVEEVYQAXXXKRHALPFEADGVVVKMDD 237

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +L  +LG  AR+PR+ I++KF  ++  TRLLD+D Q+GRTG +TPV  LEPV + G+ +
Sbjct: 238 LTLWGELGYTARAPRFAIAYKFPAEENETRLLDVDFQVGRTGRVTPVGILEPVFLEGSEV 297

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  TLHNE YI+ L           DIR+GD VLV +AG VIP+V+ ++   R  + +P 
Sbjct: 298 SRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGEERPI 346

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            +P  CP C  R++++           HRC   L C A++ E ++HF SR A +I+GLG+
Sbjct: 347 RWPETCPECGHRLLKE--------GKVHRCPNPL-CPAKRFEAIRHFPSRKAMDIQGLGE 397

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
           + ++   +       ++  AD++ L++           +   G+ S  NL   I + +  
Sbjct: 398 KLIERLLEK----GLVKDVADLYRLRKEDLVG------LERMGEKSAQNLLRQIEESKRR 447

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            LER +++LG+  VG  +AR+LA  + +     +     +    +               
Sbjct: 448 GLERLLYALGLPGVGEVLARNLAARFGNMDRLLEASLEELLEVEEVGEL----------T 497

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
           A+AI+E  ++P     V  L +       +  +     ++    V TG L 
Sbjct: 498 ARAILETLKDPAFRDLVRRLKEAGVEMEAK--EKGGEALKGLTFVITGELS 546


>gi|332297848|ref|YP_004439770.1| DNA ligase [Treponema brennaborense DSM 12168]
 gi|332180951|gb|AEE16639.1| DNA ligase [Treponema brennaborense DSM 12168]
          Length = 646

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 150/714 (21%), Positives = 278/714 (38%), Gaps = 77/714 (10%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + + +A   +  L   I  + D YY   +  I D+E+DAL      +  A P L      
Sbjct: 1   MDLFEAS-RVQELAALIEKYQDSYYN-GEAEISDAEFDALWDELKQLDPAHPVL------ 52

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
               ++IG + + +  K +H +P  S EK  + E+   +  +              + +E
Sbjct: 53  ----HRIGSD-SGNFLKASHRMPMGSQEKAADPEEFLAWAEK---------HPYDEYLVE 98

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVR 188
            K+DG  + ++Y+ G F  A  RG+G  G+D++   R +  +   L+      P    +R
Sbjct: 99  YKLDGASLELQYDNGVFAKAVTRGNGAVGDDITVNARKMGGVKLRLTRDSSPCPYTGSIR 158

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GEV +  +                 AN RNAA+G++RR +  +   YL+   +    +  
Sbjct: 159 GEVVMDHDVHRTHF--------PDKANCRNAANGLMRRKDG-EGCEYLHVVCYDALFSDH 209

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            FA  Q ++     C        +    T   ++ Y  ++   R+ LPYDIDGLV K   
Sbjct: 210 QFADEQDKIAWLSACGFQ--TVPLEICKTAQEVIDYRAKVMESRAELPYDIDGLVVKERR 267

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
                        P   I+ KF+ ++A + + +I+         TP+A  +PV + G  +
Sbjct: 268 ID---PEDAARARPDRQIAFKFSLEEAVSVVREIEWSES-GATYTPIAVFDPVELAGTTV 323

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             A+L N + ++ L            +R+G  ++V + GE+IPK+  ++      +  P 
Sbjct: 324 KRASLVNPNTMRAL-----------GVRLGSHIVVTKRGEIIPKIESVVPQSDSAEDSPD 372

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
              +     +    R              C              K     D        +
Sbjct: 373 ESATCAVPSECGTCRT---ALVDEGTRLYCPNKACPKRILHRLEKWITVLDI-------R 422

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS--VTNLYDSINKRR 546
                  ++   +  +R  +D++TL  ++ T     E  L     S     +Y S+  RR
Sbjct: 423 DLGTTLIRALFDSGRVRSVSDLYTLTVQELTPYFLAEESLAKEKKSLGAEKVYKSLQSRR 482

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
            ISL  F+    I  +G  +   L   +       + +    A        +  V   GD
Sbjct: 483 KISLAAFVAGFDIEGIGETLVEKLVASHPDMDTLEKLLGAAEA-------EIALVNGFGD 535

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           I AQA+V+      N   + +L+   +  +       S ++  +   FTG L  ++R +A
Sbjct: 536 ITAQALVQGLAE--NAAEMRSLVDSGTIEL--EAVVSSGKLSGRSFCFTGELS-VKRSEA 590

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++ V  LG    + + +    ++    ++  SK +KA  LG+ +++E  F  L+
Sbjct: 591 EQAVKALGGTTKSSVVKGLSYLVTNDTESGSSKNKKAAGLGIPVIDEAAFWELV 644


>gi|32491184|ref|NP_871438.1| hypothetical protein WGLp435 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|81741654|sp|Q8D2B9|DNLJ_WIGBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|25166391|dbj|BAC24581.1| lig [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 591

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 188/621 (30%), Positives = 321/621 (51%), Gaps = 50/621 (8%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + + ++ +L ++I   ++ YY  +  ++ D +YD+     + +   +             
Sbjct: 9   KIKTKILNLRKKIEMWNNNYYVKNLSLVSDEKYDSTLFELNELEKKYSMFLN----TSYS 64

Query: 76  NKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
           NKI  + +     K+ H    LSLE I+N ++L  F  ++ +      +   ++  E KI
Sbjct: 65  NKIVAKNICNKFKKIKHLSNMLSLESIFNYKNLLNFHEKVKKNL--FYNEKRYYCCELKI 122

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV---LSLNIPEIIEVRGEV 191
           DG  I + Y+ G    A+ RGDG  GEDV+     I +IP +    +L+ P+ IE+RGEV
Sbjct: 123 DGLAINLIYKNGILDSASTRGDGLQGEDVTKNALEIKSIPHILKKNNLSFPKKIEIRGEV 182

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EI 249
           +I  + F  +N  + +  +K ++N RN ASG LR++NP     R L+F+ +G+G  + + 
Sbjct: 183 FIKLSTFNKINKMLKSKRKKLFSNARNMASGSLRQINPKITKNRSLSFYGYGIGYVNEKK 242

Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
           +   Q++ L+ +   G P+        + + + ++Y +   IR  L ++IDG+V KV+  
Sbjct: 243 YYYDQHDALKLINSWGIPIEKNTELCKSLNEVKNFYEKSIKIRDYLDFNIDGIVVKVNSM 302

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
            LQK+LG  ++ PRW I++KF+ ++  T++L ++  +GRTG++TPVA+L+PV   G +I 
Sbjct: 303 KLQKKLGCSSKYPRWAIAYKFSSEEKCTKILGVNFNVGRTGVITPVAKLKPVYFMGTIIK 362

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            ++LHN+D I  L            I + D V +K++G+VIPK+  +I  +R  + +   
Sbjct: 363 YSSLHNKDIIDKL-----------GIMINDTVCLKKSGDVIPKISRVIFEKR-KNVKEII 410

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
           FP  C  C+S++   L  K         CTGG  C AQ+ + L HFVSR+A NI+G+G +
Sbjct: 411 FPKTCIFCKSKIEFCLRKKN------LYCTGGFLCYAQRKQLLNHFVSREALNIKGMGNK 464

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +    + +     I+ P+DIF L      +T KI  + G G  S  NL   I K +   
Sbjct: 465 IISQLIEKK----IIKYPSDIFKL------NTDKIIFLKGMGLKSSENLIKEIIKSKTTE 514

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L R I+ +GI +VG   + +LA YY +  NF           N  +  L  +  +G   +
Sbjct: 515 LYRVIYGIGIPNVGIYTSMNLANYYKNISNFI----------NTSYEDLRSIKGIGSFTS 564

Query: 610 QAIVEFYQNPRNICAVEALLK 630
             I +F ++ RNI  +  LL 
Sbjct: 565 NCIKKFLKDKRNISIISDLLN 585


>gi|42527046|ref|NP_972144.1| DNA ligase, NAD-dependent [Treponema denticola ATCC 35405]
 gi|81412203|sp|Q73MH0|DNLJ_TREDE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|41817470|gb|AAS12055.1| DNA ligase, NAD-dependent [Treponema denticola ATCC 35405]
          Length = 645

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 156/724 (21%), Positives = 280/724 (38%), Gaps = 104/724 (14%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K +  LE+ I  H D YY  ++P I D+E+DAL     A+             +     
Sbjct: 4   EKRILDLEKTIKKHQDLYYN-AQPEISDAEFDALWDELKALDPQNKLFFTVPLES----- 57

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
                     K  H IP  S EK  +      +  ++             + ++ K+DG 
Sbjct: 58  -----TEGFAKSEHIIPMGSQEKAADPPSFEAWALKM---------PFKEYIVQYKMDGA 103

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSAC-------IRAIPTIPRVLSLNIPEIIEVRGE 190
            + ++YE+G FV A  RGDG  G+D++         I+ I           P    +R E
Sbjct: 104 SLELQYEEGHFVRAVTRGDGKIGDDITENVLKMKGLIKDITVNAGPAYGTKPFSGGIRCE 163

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           V + ++                 AN RNAA+G++++ N         F    +  +    
Sbjct: 164 VIMLRSIHQKYFK--------DKANCRNAANGLMKKKNGELCEHLNLFAYDAVQGSIGRP 215

Query: 251 AKGQYEMLQ------KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             G             ++  GF     V+   +   ++ Y   +  IR +L YDIDGLV 
Sbjct: 216 FTGDAPFKTESEKLVWLKKAGFNCVE-VKYCKSIAEVIEYRAHVMDIRPSLDYDIDGLVI 274

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K D          +   P   I+ KF+ ++A T L +I+         TP+A +EPV + 
Sbjct: 275 KNDTID---PEDMKRARPEKQIAFKFSLEEAVTVLKEIEWSES-GATYTPIALIEPVRLA 330

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +  A+L N + IK L           ++++G RV+V + GE+IPK+  +  N   P+
Sbjct: 331 GTTVKRASLANPNIIKAL-----------NLKIGSRVVVTKRGEIIPKIEALAENP--PN 377

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
            +   +P  C +C S +  +                 ++C      R++ ++S    +I 
Sbjct: 378 VKEIEYPDTCSVCGSPLTNEG---------TRLYCPNMSCPKLIHHRIEKWISV--LDIR 426

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
             G   +   F+       +    D++TL         ++  I   G +S   +Y +++ 
Sbjct: 427 DFGITLIKRLFE----MGRVNSITDLYTLTVE------ELAAIDRMGKLSAEKVYKALHS 476

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           ++ ISL  FI    I  +G  +   L +  +                          V  
Sbjct: 477 KKEISLTEFIAGFDIEGIGETMVEKLEEAGFNDLNELLGASEA----------DFANVYQ 526

Query: 604 VGDIIAQAIVEFYQNPRNICAVEA----LLKEVSPSIGRHEKNVSSE-IENKKLVFTGTL 658
            G +++  +V       N+  ++     L+ +    I     +     ++     FTG L
Sbjct: 527 FGQVLSHTLVT------NLSILKDEMTGLIDKGYIKIKPPLTSEEGAVLKGLSFCFTGEL 580

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLF 716
             ++R +A+  V + G  V + + +    ++    D+  SK +KAQ+LG  I+ EE FL 
Sbjct: 581 NTMKRAQAEALVKEKGGTVKSSVVKGLSYLVTNTPDSGSSKNKKAQELGTAIITEEAFLN 640

Query: 717 LLQQ 720
           L+ +
Sbjct: 641 LIGK 644


>gi|320533083|ref|ZP_08033816.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320134698|gb|EFW26913.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 825

 Score =  294 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 156/503 (31%), Positives = 253/503 (50%), Gaps = 38/503 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQ--YSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
              AR+  S L ++I    D YY    ++  + D++YDAL R  + +  A P LAR+   
Sbjct: 33  PAAARERWSELVRDIEAARDAYYNAIDAESPLSDADYDALYRELEGLEAAHPLLARAG-- 90

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
             P   +GG          H     SL+ ++++++++++  R+        D+ +  T E
Sbjct: 91  -SPTRSVGGRAITDFAPAPHHERMYSLQDVFSLDEVQEWAERMVAETGV-GDDELAMTAE 148

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
            KIDG  + + YE G    AA RGDG +GEDV+  +R I ++P VL+ +  P ++EVRGE
Sbjct: 149 VKIDGLAVALTYEDGILTRAATRGDGTTGEDVTGNVRTIASVPLVLAGDAHPSLLEVRGE 208

Query: 191 VYISKNDFLALNDEMIAVGRKP----------YANPRNAASGILRRLNPT-DITRYLNFF 239
           VY    +F + N+E      +           +ANPRNAA+G LR+ NP    +R L   
Sbjct: 209 VYFPTQEFESFNEERRTRNLQRQADGTPLLQVFANPRNAAAGSLRQKNPAVTASRPLAMI 268

Query: 240 VHGLGKTSEIF----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
            HG+G  +          Q+E  + +   G PV+             +Y     + R  L
Sbjct: 269 AHGVGAITPAPGEKLPTRQHEWYELLAGWGLPVSPYNTVVRGRAEREAYIERYATHRHDL 328

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            ++IDG+V+K+D+ SLQ++LG  +R PRW  ++K+  ++  TRLLDI +Q+GRTG +TP 
Sbjct: 329 IHEIDGIVFKLDDHSLQRRLGHTSRVPRWATAYKYPPEEVRTRLLDIAVQVGRTGRVTPF 388

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
             +EPV + G+ +  ATLHN   +             + +R+GD V+V++AG+VIP+++ 
Sbjct: 389 GMMEPVLVAGSTVARATLHNATEVAR-----------KGVRIGDMVIVRKAGDVIPEILG 437

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
            +   R    + F  P+ CP C + +               RC    +C AQ  ER+ H 
Sbjct: 438 PVAELRDGSERDFVMPTHCPSCGTELA-----PAKDGDVDLRCPNTRSCPAQLTERIAHI 492

Query: 476 VSRDAFNIEGLGKQQLDFFFKSE 498
            SR A ++EGLG +      + +
Sbjct: 493 GSRGALDVEGLGDEAAGALTRPD 515



 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 13/207 (6%)

Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575
           +Q                + T +   + + R   L R + +L +RHVG   AR+LA  + 
Sbjct: 615 KQIYDADGRVKRATAPGKNATAMISQLRQARTRPLWRILVALSVRHVGPTAARALAARFR 674

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635
           S +   Q           D   L  V  VG  IA++ V + +   +   +         +
Sbjct: 675 SLEALCQA----------DVAELAEVDGVGPTIAESWVRWREVDWHREILSRWEAAGVRT 724

Query: 636 IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
                         +E   +V TG+L++  R  A+E +   G   S  +S+KT  ++VGD
Sbjct: 725 REETSDQQEEPARTLEGLTIVVTGSLERFTRDSAKEAIVSRGGKASGSVSKKTSFVVVGD 784

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             GSK  KA+ LG+ I++E+ F+ LL+
Sbjct: 785 KAGSKESKARDLGLTILDEDGFVALLE 811


>gi|326774207|ref|ZP_08233489.1| DNA ligase, NAD-dependent [Actinomyces viscosus C505]
 gi|326636346|gb|EGE37250.1| DNA ligase, NAD-dependent [Actinomyces viscosus C505]
          Length = 818

 Score =  294 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 159/514 (30%), Positives = 259/514 (50%), Gaps = 39/514 (7%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQ--YSKPIILDSEYDALKRRCDAIAH 60
           +R  + + A+    AR+  S L ++I    D YY    ++  + D++YD L R  + +  
Sbjct: 23  QRGPVDLSAI-PTAARERWSELVRDIEAARDAYYNAIDAESPLSDADYDTLYRELEGLEA 81

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           A P LAR+     P   +GG          H     SL+ ++++++++++  R+      
Sbjct: 82  AHPLLARAG---SPTRSVGGRAVTDFAPAPHHERMYSLQDVFSLDEVQEWAERMVAETGV 138

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             D+ +  T E KIDG  + + YE G    AA RGDG +GEDV+  +R I ++P VL+ +
Sbjct: 139 -GDDELAMTAEVKIDGLAVALTYEDGILTRAATRGDGTTGEDVTGNVRTIASVPLVLAGD 197

Query: 181 -IPEIIEVRGEVYISKNDFLALNDEMIAVGRKP----------YANPRNAASGILRRLNP 229
             P ++EVRGEVY    DF A N+E      +           +ANPRNAA+G LR+ NP
Sbjct: 198 AHPSLLEVRGEVYFPTQDFEAFNEERRTRNVQRQADGAPLLQVFANPRNAAAGSLRQKNP 257

Query: 230 T-DITRYLNFFVHGLGKTSEIF----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSY 284
               +R L    HG+G  +          Q+E  + +   G PV+             +Y
Sbjct: 258 AVTASRPLAMIAHGVGAITPAPGESLPTRQHEWYELLAGWGLPVSPYNAVVRGRVEREAY 317

Query: 285 YNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDI 344
                + R  L ++IDG+V+K+D+ SLQ++LG  +R PRW  ++K+  ++  TRLLDI +
Sbjct: 318 IERYAAHRHDLIHEIDGIVFKLDDHSLQRRLGHTSRVPRWATAYKYPPEEVRTRLLDIAV 377

Query: 345 QIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVK 404
           Q+GRTG +TP   +EPV + G+ +  ATLHN   +             + +R+GD V+V+
Sbjct: 378 QVGRTGRVTPFGMMEPVLVAGSTVARATLHNATEVAR-----------KGVRIGDMVIVR 426

Query: 405 RAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLAC 464
           +AG+VIP+++  + + R    + F  P+ CP C + +               RC    +C
Sbjct: 427 KAGDVIPEILGPVADLRDGSERDFVMPTHCPSCGTELA-----PAKDGDVDLRCPNTRSC 481

Query: 465 SAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
            AQ  ER+ H  SR A ++EGLG +      + +
Sbjct: 482 PAQLTERIAHIGSRGALDVEGLGDEAAGALTRPD 515



 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 13/207 (6%)

Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575
           +Q                + T +   + + R+  L R + +L +RHVG   AR+LA  + 
Sbjct: 615 KQTYDADGRVKKATAPGKNATAMLSQLRQARSRPLWRILVALSVRHVGPTAARALAARFR 674

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635
           S +   Q           D   L  V  VG  IA++   + +   +   +         +
Sbjct: 675 SLEALCQA----------DVAELAEVDGVGPTIAESWARWREVDWHREILSRWEAAGVRT 724

Query: 636 IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
                +        +E   +V TG+L+   R  A+E +   G   S  +S+KT  ++VGD
Sbjct: 725 REEDSEEQEEPARTLEGLTVVVTGSLEGFTRDSAKEAIVSRGGKASGSVSKKTSFVVVGD 784

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             GSK  KA++LG+ I++EE F+ LL+
Sbjct: 785 KAGSKETKARELGLTILDEEGFVALLE 811


>gi|111226523|ref|XP_001134548.1| BRCT domain-containing protein [Dictyostelium discoideum AX4]
 gi|90970627|gb|EAS66865.1| BRCT domain-containing protein [Dictyostelium discoideum AX4]
          Length = 843

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 176/804 (21%), Positives = 332/804 (41%), Gaps = 148/804 (18%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  +I+ ++D YY  SK  I D EYD L +R + +   F             N++G  ++
Sbjct: 71  LRNKINRYNDLYYNKSKSEISDFEYDKLFKRLEILEKKFNQQTI-------TNQVGAPIS 123

Query: 84  LSLF----KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-------IFFTLEP 132
                   K  H    LSL+  ++ +D+  F  +I +F  KK  +        I ++LE 
Sbjct: 124 DYSNNRGLKFRHKSRMLSLQNTYSKDDIIAFKNKIEKFLLKKQTSQQQQPQQQIEYSLEL 183

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K DG  I++ YE  K      RG+G  GED++          + L      +      + 
Sbjct: 184 KYDGIGISLVYENNKLKRVLTRGNGEIGEDITTNALQFIPSLKNLLTLPSNLTVFILFLI 243

Query: 193 ISKNDFLALND--------------EMIAVGRKPYANPRNAASGILRRLNPTDI------ 232
           +   DF    +              ++    +  Y N RN  SGILR+    D       
Sbjct: 244 LKYKDFEIRGEVVLNKSYLKIINKLKLDNNDQHQYKNTRNIVSGILRKSIEEDANDSLNI 303

Query: 233 --------TRYLNFFVHGLGK----------------------------TSEIFAKGQYE 256
                       +FF +                                  +     Q +
Sbjct: 304 EPILLLNEQMKFDFFPYFFIPTNNNNNNINNGENENENDNEKENDNEMIIDDERCNTQSK 363

Query: 257 MLQKMRCLGFPVNNGVRQA-----------NTFHGIVSYYNEMK-SIRSTLPYDIDGLVY 304
            L+    +GF ++NG               N    I  +  E +   R    +DIDG+V 
Sbjct: 364 NLKLFEKMGFQIDNGSNTVVTLSTGGGGNNNDIKNIEEFIKEWELKKRENHNWDIDGIVI 423

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           KV++ ++Q+ LG+  RSPRW  ++KF  K   + + DI +Q+G++G +TPVA +EP+ + 
Sbjct: 424 KVNDINIQRILGDINRSPRWAFAYKFGAKSEISTIKDIVLQVGKSGRITPVALVEPIQVH 483

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  I+ ATL+N  YI  L           +I++G +VL++RAG+VIPK++  + +  +  
Sbjct: 484 GVTISRATLNNLSYINKL-----------NIKIGSKVLIERAGDVIPKIITNLDDNINNT 532

Query: 425 AQPFSFPS--------FCPICQSRVVRD--LNPKTGKLVAAHRCTGGLACSAQQLERLKH 474
               +  +         C    + +      +    ++           C  Q ++++  
Sbjct: 533 NTNTNTNNTNNIESLFKCNENGNILCPCNLKSELVNRVGYVDYFCVAENCPNQLVQQISW 592

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
           FV + A NI+G+GK Q+    +++     I    D++ L + ++    K+ ++ GF    
Sbjct: 593 FVDKKAMNIQGVGKSQIQVLLENQ----LIEDFGDLYELYQFKE----KLLSLKGFSHTK 644

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
           V NL +SI   ++  L   + ++GI  +G+  ++ L++ + S  N           N+  
Sbjct: 645 VNNLLESIEDSKSRGLASLLCAIGIPGIGSSNSKILSEKFQSLDNLI---------NSPS 695

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQ--NPRNICAVEALL--------------------KEV 632
             S+     +G   +++I  F+   +      ++ L+                    +  
Sbjct: 696 IESIELQSGLGRQTSESIFNFFNPLDQFEKQYLDYLIFKFKSNNLKLTHNNNNDNNEEIG 755

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT-QLGAVVSAILSRKTDIIIVG 691
           + +   + +N +S + NK +V TG  +   R   ++++  +  A V + ++  T I+++G
Sbjct: 756 NNNNNNNNENNNSFLSNKYIVITGKFKLGDRDFVKDFIQRKFNAKVQSSINSFTQILLIG 815

Query: 692 DNPG-SKLEKAQQLGVKIMNEEQF 714
           + P  +KL KA +LG++I +E + 
Sbjct: 816 EKPAIAKLNKANELGIQIKSENEL 839


>gi|332992914|gb|AEF02969.1| DNA ligase, NAD-dependent [Alteromonas sp. SN2]
          Length = 404

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 129/349 (36%), Positives = 196/349 (56%), Gaps = 10/349 (2%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++EQA+    SL  +I+ ++  YY    P + D++YD   +   +I   FP+L   +  +
Sbjct: 4   TLEQAKARAESLRGQINEYNYQYYVLDAPTVPDAQYDRDMQELISIEKQFPEL---QSVS 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  K+GG    +  +VTH +P LSL+  ++   L  F  RIY     KD+  + F+ EP
Sbjct: 61  SPSQKVGGSALSAFEQVTHEVPMLSLDNAFDDVSLLAFEKRIYDRL--KDNKELGFSCEP 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEV 191
           K+DG  ++I YE G+ V AA RGDG  GE+++  +R I  +P  L   N P  +EVRGEV
Sbjct: 119 KLDGLAVSILYENGEMVRAATRGDGQVGENITTNVRTIANVPLKLRGENYPSRLEVRGEV 178

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250
           ++ K  F ALND   A   K +ANPRNAA+G LR+L+      R L F+ + LG  +   
Sbjct: 179 FMPKKGFEALNDYQRANDGKVFANPRNAAAGSLRQLDSKVTAKRPLMFYAYSLGVVTPED 238

Query: 251 A---KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                     L ++   G P+   +  A    G ++YY  + ++R  LPYDIDG+V+KVD
Sbjct: 239 FELPHHHSARLAQLGEWGIPLCPDIDTAEGGKGCLAYYQRILTLRDDLPYDIDGVVFKVD 298

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           + S+Q+ LG  AR+PRW I+ KF  ++  T+LLD++ Q+GRTG +    
Sbjct: 299 DISVQQTLGFVARAPRWAIAQKFPAQEEITKLLDVEFQVGRTGAMGVTM 347


>gi|281358582|ref|ZP_06245061.1| DNA ligase (NAD(+)) [Victivallis vadensis ATCC BAA-548]
 gi|281314930|gb|EFA98964.1| DNA ligase (NAD(+)) [Victivallis vadensis ATCC BAA-548]
          Length = 626

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 171/735 (23%), Positives = 289/735 (39%), Gaps = 120/735 (16%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60
           M  +  I  E L  ++       L + I YH+  Y+   +P I D+ YD L R    +  
Sbjct: 1   MDTKNFIA-EKLDRDE-------LIRLIEYHNRRYWDEGEPEIPDARYDELIRALQKLEP 52

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
              +L           ++         KV H  P LSL+K +++E++ ++  +  R    
Sbjct: 53  DH-ELVT---------RVYAPAVAGSGKVRHLRPMLSLDKAYSLEEVLEWAKKFAR---- 98

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
                    +EPK DG         G+ +    RGDG  GE+++  +  +       +  
Sbjct: 99  --SEDEELLVEPKYDGISANF---DGRVLS--TRGDGELGENITDKLPLVELETAGHTGK 151

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240
           +     VRGE+ I  +DF  L   +   G   Y N RNA +GI+      +         
Sbjct: 152 VDRP--VRGELVIRDDDFKTLYSHIRKKGGGVYKNSRNAVAGIMGLKEIAE--------- 200

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
                           M  +   +     N V     +  + + + E++     LPY  D
Sbjct: 201 ----------------MELQGAKITLVDYNLVSFRVKYSELAAKWEELRRQLEALPYPQD 244

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V K+ + +    LG  A  PR  I+ KF   +  TRL+ ++   G+   LTPVA LEP
Sbjct: 245 GIVIKLADSAYSASLGNTAHHPRGEIAFKFTNIRRETRLIGVEWSFGK-NCLTPVAELEP 303

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V I G  I  ATLHN   I  L            +++GD V V+RAG+VIP +V      
Sbjct: 304 VEISGTTIRRATLHNIQNILEL-----------GVQIGDTVTVERAGDVIPYIVSST--- 349

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
              + +       CP C +++VR              C     C   QL+RL    +   
Sbjct: 350 -PGEERRSPLIEDCPSCGAKLVRRGPE---------LCCPNPECPETQLQRL--AAAVRN 397

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
             IE LG+  L    ++      +R   D+F L          +  + GF   S  NL +
Sbjct: 398 LGIERLGEPTLRKLMENSG----VRHLGDLFELTAMD------LLRLDGFAAKSAANLIE 447

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
            I K R ++  + + +L I ++GA +A+ +  +            +           L  
Sbjct: 448 EIQKARIVNDYQLLAALNIPNIGANVAKVIFSH-----------TDFAGLRRMSEEELSA 496

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQ 659
           +P +G   A+A+V           ++ LL  V           +        + FTG + 
Sbjct: 497 IPGIGPERAKALVSELAAQS--EYLDELLGAVRLIHAAAPAAEIP------TVCFTGKMP 548

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIV---GDNPGSKLEKAQQLGVKIMNEEQFLF 716
           + +R   ++  T  G   +  ++    +++     +N G KL+KA +LGVK+++ ++FL 
Sbjct: 549 E-KRSYYEKLATAHGYRSADDVTSSLSLLVAADPAENSG-KLKKAARLGVKVVSLDEFLS 606

Query: 717 LLQQYNTTLRIHDDD 731
           +L     +  I + D
Sbjct: 607 MLS--PASAPIAEAD 619


>gi|153217072|ref|ZP_01950836.1| DNA ligase [Vibrio cholerae 1587]
 gi|124113902|gb|EAY32722.1| DNA ligase [Vibrio cholerae 1587]
          Length = 330

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 110/335 (32%), Positives = 175/335 (52%), Gaps = 8/335 (2%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L+ L + +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+         +   F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHS--TFCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP  L   + P  +EVRGEV+
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIF 250
           + K  F ALN   +  G K + NPRNAA+G LR+L+      R L F+ + +G       
Sbjct: 176 MPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y+IDG+V KVD+  
Sbjct: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDIFQRRQSLAYEIDGVVIKVDDIQ 295

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQ 345
           LQ++LG  AR+PRW I++KF  ++  T L D++ Q
Sbjct: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQ 330


>gi|257793742|ref|ZP_05642721.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9781]
 gi|257787714|gb|EEV26054.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9781]
          Length = 425

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 161/463 (34%), Positives = 248/463 (53%), Gaps = 42/463 (9%)

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           GF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q ++G   +SPRW
Sbjct: 1   GFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFTQKSPRW 60

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
            I++KF  ++  T+LLDI++ IGRTG++TP A LEPV + G  ++ A+LHNED I     
Sbjct: 61  AIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDLIH---- 116

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                   RDIR+GD V+VK+AG++IP+VV  I   R  DA  +  P+ CP C   +VR 
Sbjct: 117 -------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCGHELVRI 169

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
                     A RC     C AQ +E L HFVSR A NI+GLG + +   ++SE     I
Sbjct: 170 EGE------VALRCINPK-CQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE----LI 218

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564
           +  ADIF L             +   G   V NL  +I + ++ SLE  +F LGIRH+G 
Sbjct: 219 KDVADIFYLTEEDL------LPLDRMGQKKVDNLLAAIQQAKDNSLENLLFGLGIRHLGV 272

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
           + ++ LA+ Y +                     L+ +  +GD +AQ++V + +N      
Sbjct: 273 KASQVLAEKYETIDRLLTVTEA----------ELVEIHDIGDKVAQSVVTYLENEDIRAL 322

Query: 625 VEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
           ++ L  +    I +  K        E   K +V TG L ++ R++A +++   GA V++ 
Sbjct: 323 IQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQGAKVTSS 382

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           +++ TD++I G++ GSKL KAQ LG++I  E+QF+    + N+
Sbjct: 383 VTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS 425


>gi|145218922|ref|YP_001129631.1| DNA ligase, NAD-dependent [Prosthecochloris vibrioformis DSM 265]
 gi|145205086|gb|ABP36129.1| DNA ligase, NAD-dependent [Chlorobium phaeovibrioides DSM 265]
          Length = 488

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 165/527 (31%), Positives = 264/527 (50%), Gaps = 40/527 (7%)

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           + K DF ALND         +ANPRNA +G L+  +  ++     +FV       +    
Sbjct: 1   MRKEDFTALNDTRPE--EDRFANPRNATAGTLKLQDSAEVAVRRLWFVAYYLDGIQDPDT 58

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
             +  LQ +   GF      R       I ++       R  LPY+ DG+V K+++    
Sbjct: 59  PHFHRLQLLETAGFFTGGHYRLCKGMQEIAAFIARWNEERWHLPYETDGVVLKLNDVRQW 118

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K LG  ++SPRW I++K+  +QA+T L D+  Q+GR G +TPVA LEPV + G+ ++ +T
Sbjct: 119 KTLGATSKSPRWAIAYKYPAQQATTVLRDVVFQVGRLGTITPVAELEPVRLAGSTVSRST 178

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           LHN D ++ L            I +GDRV+++++GEVIPKV+ ++   R  DA+    PS
Sbjct: 179 LHNFDEMRRL-----------GIMIGDRVVIEKSGEVIPKVIRVVTEARPVDARLVELPS 227

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C + +VR+             C     C AQ   R+ HF SR+A +I+ LG+  ++
Sbjct: 228 RCPACSTPIVREEGE------VGFYCPNEAGCPAQLKGRILHFASRNAMDIQNLGEALVE 281

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      +  P D++ LQ  Q        N+   G  S  N+  ++++ R+ S  R
Sbjct: 282 QLV----AFGLVHDPGDLYFLQEPQL------RNLERMGPKSAQNVVRALDESRSQSYAR 331

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            +F+LGIRHVG   AR LA+ + S +         +A           V  +G +IA++I
Sbjct: 332 LLFALGIRHVGQATARELARAFPSIEALEAASEEELA----------DVADIGPVIARSI 381

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
            E+++ P     +E L     P      K  ++S  E   +VFTG L +  R  A E V 
Sbjct: 382 REWFEAPAVSALLEKLRDARLPLAAEDPKPLINSNFEGLSVVFTGALLRHDRQSASELVL 441

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + G  + + +S+KT +++ G   GSKLEKA +LG+++++EE+F  +L
Sbjct: 442 ERGGKIVSTVSKKTGLVVAGREAGSKLEKALKLGLRVISEEEFEAML 488


>gi|329946006|ref|ZP_08293693.1| DNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528454|gb|EGF55432.1| DNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 811

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 156/500 (31%), Positives = 253/500 (50%), Gaps = 38/500 (7%)

Query: 17  ARKELSSLEQEISYHDDCYYQ--YSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           AR+    L ++I    D YY    ++  + D++YD L R  + +  A P LAR+     P
Sbjct: 27  ARERWGELVRDIEAARDAYYNAVDAESSLSDADYDVLYRELEDLEAAHPLLARAG---SP 83

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +GG          H     SL+ ++++++++++  R+       DD  +  T E KI
Sbjct: 84  TRSVGGRAITDFTPAPHHERMYSLQDVFSLDEVQEWAERMMAETGVADD-DLAMTAEVKI 142

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  + + YE G    AA RGDG +GEDV+  +R I ++P VLS +  P ++EVRGEVY 
Sbjct: 143 DGLAVALTYENGILTRAATRGDGTTGEDVTGNVRTIASVPLVLSGDAHPSLLEVRGEVYF 202

Query: 194 SKNDFLALNDEMIAVGRKP----------YANPRNAASGILRRLNPT-DITRYLNFFVHG 242
              +F A N++      +           +ANPRNAA+G LR+ NP    +R L    HG
Sbjct: 203 PTQEFEAFNEDRRTRNVQRQADGAPLLQVFANPRNAAAGSLRQKNPAITASRPLAMIAHG 262

Query: 243 LGKTSEIF----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
           +G  +          Q+E  + +   G PV+             +Y     + R  L ++
Sbjct: 263 VGAITPAPGERLPARQHEWYELLAGWGLPVSPYNTVVRGRAEREAYIERYATHRHDLIHE 322

Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
           IDG+V+K+D+ SLQ++LG  +R PRW  ++K+  ++  TRLLDI +Q+GRTG +TP   +
Sbjct: 323 IDGIVFKLDDHSLQRRLGHTSRVPRWATAYKYPPEEVRTRLLDIAVQVGRTGRVTPFGMM 382

Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
           EPV + G+ +  ATLHN   +             + +R+GD V+V++AG+VIP+++  + 
Sbjct: 383 EPVLVAGSTVARATLHNATEVAR-----------KGVRIGDMVIVRKAGDVIPEILGPVA 431

Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478
           + R    + F+ P+ CP C + +               RC    +C AQ  ER+ H  SR
Sbjct: 432 DLRDGTERDFAMPTHCPSCGTELA-----PAKDGDVDLRCPNTRSCPAQLTERIAHIGSR 486

Query: 479 DAFNIEGLGKQQLDFFFKSE 498
            A ++EGLG +      + +
Sbjct: 487 GALDVEGLGDEAAGALTRPD 506



 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 13/207 (6%)

Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575
           +Q                +   +   +   R   L R + +L +RHVG   AR+LA  + 
Sbjct: 606 KQTYDADGRVKKATVPGKNAIAMLSQLRDARTRPLWRILVALSVRHVGPTAARALAARFR 665

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635
           S +               D   L  V  VG  IA++ V +     +   +         +
Sbjct: 666 SLETLCHA----------DVAELAEVDGVGSTIAESWVRWRDVDWHREILNRWEAAGVRT 715

Query: 636 IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
                         ++   +V TG+L+   R  A+E +   G   S  +SRKT  +IVGD
Sbjct: 716 REEASDQQEEPARTLDGLTVVVTGSLEGFTRDSAKEAIVSRGGKASGSVSRKTSFVIVGD 775

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             GSK  KA++LG+ I++EE F+ LL+
Sbjct: 776 KAGSKEAKARELGLTILDEEGFVSLLE 802


>gi|256829851|ref|YP_003158579.1| DNA ligase (NAD(+)) [Desulfomicrobium baculatum DSM 4028]
 gi|256579027|gb|ACU90163.1| DNA ligase (NAD(+)) [Desulfomicrobium baculatum DSM 4028]
          Length = 615

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 150/709 (21%), Positives = 284/709 (40%), Gaps = 117/709 (16%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           E   L + ++ ++D Y +   P++ D++YD L  R   +    P L          +++ 
Sbjct: 10  EAHRLVERLAEYNDAY-RRGAPLVGDAQYDLLLARLRELDPDHPFL----------HRVE 58

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            E      ++ H +P LS +K +  E+L +F+ R+ +   +   + + + + PK+DG   
Sbjct: 59  PETFSGKREIRHPVPMLSTDKAYTSEELERFVARVEKEAGEIGVSEVRYRVTPKLDGLAG 118

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
               + G F     RG+G SG +VS+             + +       GE+ I ++ F 
Sbjct: 119 R---DDGTFF--VTRGNGESGYEVSSAFAKG-------MIPLGGRGRGVGEMVILQSYFQ 166

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTD------ITRYLNFFVHGLGKTSEIFAKG 253
               +        + +PRN   GI+      +          + F  +    + E     
Sbjct: 167 EHLSDA-------FEHPRNLVVGIVSSDTVNELAKKALADEAVRFVPYAELPSWEGSGAE 219

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             + +  +                           + + + + Y +DG+V +V +  +++
Sbjct: 220 LLQRMDAL--------------------------TEELSAQVDYPLDGMVVEVVDEDVRR 253

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
            +G  +   RW I+ K   + A T +  +  Q+GRTG +TPV  +EPVN+ GA I   T 
Sbjct: 254 TMGATSHHYRWQIAVKRKGETALTVVTGVVWQVGRTGKVTPVLMVEPVNVSGATIRRVTA 313

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN   ++            + +  G  + + R+GEVIPKV  ++V          + P+ 
Sbjct: 314 HNAGLLEK-----------KGLGPGAEIEIIRSGEVIPKVEAVLVPAAT------TLPTA 356

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C + + R+ +                 C  Q ++ ++H+      N +  G++ ++ 
Sbjct: 357 CPSCGAALEREND---------FLLCRNEHCPDQVVQTIEHWFK-TLGNADWFGRKTVEK 406

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +S   +        ++ L      +      + G    +V      +++ R +   RF
Sbjct: 407 MVRSGYDSL-----EKVYELGEDDFRAMGFGPVLSGNLAEAVY-----LSRTREVEDWRF 456

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           + +LGI  +G   +R L + +            +          +  V   G I A +I 
Sbjct: 457 LAALGIEDLGKGDSRKLLEQFR-----------LQDLLTVSRERIEAVHGFGAITAASIA 505

Query: 614 EFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
                 R    +  LL       P+    EK   S +  K +VFTG ++   R   QE  
Sbjct: 506 RGL--ERVGPTLRHLLDLGFRIMPTGAAREKVTDSPLAGKHVVFTGKMRG-SREDMQEEA 562

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
              GA+V + ++ KTD +I G+N G SKL KA+Q G  I+ E+++L L+
Sbjct: 563 RAQGALVQSAVNSKTDFLICGENVGASKLAKARQFGTAILQEDEYLRLI 611


>gi|225013055|ref|ZP_03703470.1| DNA ligase, NAD-dependent [Flavobacteria bacterium MS024-2A]
 gi|225002783|gb|EEG40764.1| DNA ligase, NAD-dependent [Flavobacteria bacterium MS024-2A]
          Length = 487

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 164/519 (31%), Positives = 258/519 (49%), Gaps = 39/519 (7%)

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           +N++   +G   Y NPRN ASG L+  + + +                +    QY+ L K
Sbjct: 1   MNEQRAILGEPLYRNPRNTASGSLKLQDSSIVAERPLTCFLYSLAGDNLPVTSQYDALIK 60

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
            R  GF V    R  N+   +  +    +  R +LPY+IDG+V KV+   LQ++LG  A+
Sbjct: 61  AREWGFKVPESARLVNSIDAVFEFITYWEEQRKSLPYEIDGIVIKVNSLFLQEELGFTAK 120

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +PRW I++K+  +QASTRL  +  Q+GRTG +TPVA+LEPV I G  +  A+LHN D I+
Sbjct: 121 APRWAIAYKYKAEQASTRLNAVQYQVGRTGAITPVAQLEPVVISGTTVKRASLHNADQIE 180

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
            L           D+R+GD V V++ GE+IPK+  I  + R        F   CP C S 
Sbjct: 181 KL-----------DMRIGDTVFVEKGGEIIPKITGIDNHNRGKHEDRVLFIENCPECNSP 229

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           + R          A H C+  L+C  QQ+ +++HF+ R A +IEGLG + +   +K    
Sbjct: 230 LRRVQGE------AQHYCSNELSCPPQQIGKIQHFIGRKAMDIEGLGGETVGLLYKE--- 280

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
              +R  AD++ L++ Q         I    + SV NL + I K +     + +F LGIR
Sbjct: 281 -GLLRSIADLYQLKKEQV------LPIERMAEKSVANLLEGIEKSKEKPFSKVLFGLGIR 333

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           +VG  +A+ LA+ + S    A                L     +GD IAQ++++++ + +
Sbjct: 334 YVGETVAKQLAREFKSIDRLALAT----------LEELTNTEEIGDRIAQSVLDYFASTK 383

Query: 621 NICAVEALLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
           N   + AL            + N   +   KK V +G  +   R   +  +  +G  V++
Sbjct: 384 NQSQISALKNFGLQMQALESEHNFHDDFVGKKFVVSGVFEAFSREVLKSEIENMGGKVAS 443

Query: 680 ILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
            +S KTD +I G+  G SK EKA + GV I++E+ +L L
Sbjct: 444 SVSAKTDYLISGEGVGPSKKEKADKFGVTILDEKSYLAL 482


>gi|257069044|ref|YP_003155299.1| DNA ligase, NAD-dependent [Brachybacterium faecium DSM 4810]
 gi|256559862|gb|ACU85709.1| DNA ligase, NAD-dependent [Brachybacterium faecium DSM 4810]
          Length = 871

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 152/533 (28%), Positives = 253/533 (47%), Gaps = 68/533 (12%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E A++ +++L   I      YY++  P + D+EYD L++   A+  A P LA     + P
Sbjct: 19  ETAQQRIAALTARIEQARVDYYEHDAPTMADAEYDELEKELRALEEANPQLAA---EDSP 75

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +GG     L  + H+    SL+ ++++E+LR++               + +  E KI
Sbjct: 76  TRTVGGAAAAGLPTIDHAERMQSLDNVFSLEELREWCAHAAAELG----GEVRYLTELKI 131

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193
           DG  I +RYE G+ V AA RGDG +GEDV+     I  IP+ LS +  P ++EVRGEV++
Sbjct: 132 DGLAINLRYEHGELVTAATRGDGRTGEDVTVNALQIDGIPQRLSGSGHPALVEVRGEVFM 191

Query: 194 SKNDFLA------------------LNDEMIAVGRKPYANPR-----------------N 218
              DF                      +     GR+P+   R                  
Sbjct: 192 PTADFERLNDLQVELRERAVAESRTRWESRQGSGRRPFDEQRESLAAARRFPTFANPRNT 251

Query: 219 AASGILRRLNPTD---------ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269
           AA G+ ++L+  +             L   VHGLG   +     Q EM + +   G P +
Sbjct: 252 AAGGLRQQLDKKEGLEREAGEARLAALRLTVHGLGAWPDPPVGSQSEMYELLASWGLPTS 311

Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
             +   ++   + +Y       R  L ++IDG+V KVD F+ Q+ LG  +R+PRW I+ K
Sbjct: 312 RYMDVVDSIDEVAAYVEHHGEHRHDLEHEIDGIVVKVDSFAQQRALGSTSRAPRWAIAVK 371

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389
           F  ++ +T+LLDI +Q+GRTG +TP   +EPV + G+ +  ATLHN+  ++         
Sbjct: 372 FPPEEVTTKLLDIQVQVGRTGRVTPFGVMEPVTVAGSTVEKATLHNQFDVER-------- 423

Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449
              + + +GD +++++AG+VIP+++  + + R    +PF  P+ CP C + +  +     
Sbjct: 424 ---KGVLIGDTIVLRKAGDVIPEILAPVESLRDGSERPFVMPAQCPACGTEIRPER---- 476

Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
            +     RC     C AQ   R++H  SR AF+IE LG++        +    
Sbjct: 477 -EGDKDWRCPNQRDCPAQVTGRVEHAGSRGAFDIESLGEESAIALTDPDKRRG 528



 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 103/241 (42%), Gaps = 10/241 (4%)

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
            Q +         + I+         R  +      +        S   L   + K ++ 
Sbjct: 611 WQPERRNGEPTGDWRIQPAFWSRPQFRHYKRDEEWRQQKAPSVLKSTEVLISELEKAKSQ 670

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            L R + +L IRHVG   ARSLA  Y S     +               L     VG+II
Sbjct: 671 PLWRVLVALSIRHVGPTAARSLATAYGSMDAIREA----------SVEQLSDTDGVGEII 720

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           A+A+VE++    +   V+   +         E+  +  +E   +V TG L+   R  A+E
Sbjct: 721 AEAVVEWFAVDWHRELVDGWARSGVRMADEVEEGFTKTLEGLTVVVTGGLEGFTRDGAKE 780

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIH 728
            +   G   S  +S+KTD ++VG+N GSK  KA++LG++I++E  F+ LL+     + + 
Sbjct: 781 AIITRGGKASGSVSKKTDFVVVGENAGSKETKARELGLRILDEAGFVALLEGGAEAVALE 840

Query: 729 D 729
           +
Sbjct: 841 E 841


>gi|325068288|ref|ZP_08126961.1| DNA ligase (NAD(+)) [Actinomyces oris K20]
          Length = 818

 Score =  289 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 157/514 (30%), Positives = 260/514 (50%), Gaps = 39/514 (7%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQ--YSKPIILDSEYDALKRRCDAIAH 60
           +R  + + A+    AR+  S L ++I    D YY    ++  + D++YD L R  + +  
Sbjct: 23  QRGPVDLSAI-PSAARERWSELVRDIEAARDAYYNAIDAESPLSDADYDLLYRELEGLEA 81

Query: 61  AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
           A+P LAR+     P   +GG          H     SL+ ++++++++++  R+      
Sbjct: 82  AYPLLARAG---SPTRSVGGRAVTDFAPAPHHERMYSLQDVFSLDEVQEWAERMVAETGV 138

Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
             D+ +  T E KIDG  + + YE G    AA RGDG +GEDV+  +R I ++P VL+ +
Sbjct: 139 -GDDELAMTAEVKIDGLAVALTYEDGILTRAATRGDGTTGEDVTGNVRTIASVPLVLAGD 197

Query: 181 -IPEIIEVRGEVYISKNDFLALNDEMIAVGRKP----------YANPRNAASGILRRLNP 229
             P ++EVRGEVY    +F A N+E   +  +           +ANPRNAA+G LR+ NP
Sbjct: 198 AHPSLLEVRGEVYFPTQEFEAFNEERRTLNLQRQADGAPLLQVFANPRNAAAGSLRQKNP 257

Query: 230 T-DITRYLNFFVHGLGKTSEIF----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSY 284
               +R L    HG+G  +          Q+E  + +   G  V+             +Y
Sbjct: 258 AVTASRPLAMIAHGVGAITPAPGERLPTRQHEWYELLAGWGLAVSPYNAVVRGRAEREAY 317

Query: 285 YNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDI 344
                + R  L ++IDG+V+K+D+ SLQ++LG  +R PRW  ++K+  ++  TRLLDI +
Sbjct: 318 IERYATHRHDLIHEIDGIVFKLDDHSLQRRLGHTSRVPRWATAYKYPPEEVRTRLLDIAV 377

Query: 345 QIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVK 404
           Q+GRTG +TP   +EPV + G+ +  ATLHN   +             + +R+GD V+V+
Sbjct: 378 QVGRTGRVTPFGMMEPVLVAGSTVARATLHNATEVAR-----------KGVRIGDMVIVR 426

Query: 405 RAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLAC 464
           +AG+VIP+++  + + R    + F  P+ CP C + +               RC    +C
Sbjct: 427 KAGDVIPEILGPVADLRDGSERDFVMPTHCPSCGTELA-----PAKAGDVDLRCPNTRSC 481

Query: 465 SAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
            AQ  ER+ H  SR A ++EGLG +      + +
Sbjct: 482 PAQLTERIAHIGSRGALDVEGLGDEAAGALTRPD 515



 Score =  186 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 13/207 (6%)

Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575
           +Q                + T +   + + R+  L R + +L +RHVG   AR+LA  + 
Sbjct: 615 KQTYDADGRVKKATVPGKNATAMLSQLRQARSRPLWRILVALSVRHVGPTAARALAARFR 674

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635
           S +   Q           D   L  V  VG  IA++ V + +   +   +         +
Sbjct: 675 SLEALCQA----------DVAELAEVDGVGPTIAESWVRWREVDWHREILSRWEAAGVRT 724

Query: 636 IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
                +        +E   +V TG+L+   R  A+E +   G   S  +S+KT  ++VGD
Sbjct: 725 WEEDSEEQEEPARTLEGLTVVVTGSLEGFTRDSAKEAIVSRGGKASGSVSKKTSFVVVGD 784

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
             GSK  KA++LG+ I++EE F+ LL+
Sbjct: 785 KAGSKETKARELGLTILDEEGFVALLE 811


>gi|56966057|pdb|1TA8|A Chain A, Structural Rearrangement Accompanying Nad+ Synthesis
           Within A Bacterial Dna Ligase Crystal
          Length = 332

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 117/329 (35%), Positives = 183/329 (55%), Gaps = 10/329 (3%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL     P
Sbjct: 6   LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + +  E
Sbjct: 63  DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+  I   +EVRGE 
Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+      R LN F++ +     + 
Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+EF+
Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRL 339
           LQ +LG   ++PRW I++KF  ++A T +
Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVV 325


>gi|269219963|ref|ZP_06163817.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269210599|gb|EEZ76939.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 799

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 149/490 (30%), Positives = 246/490 (50%), Gaps = 34/490 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            AR+  + +   +S     Y+   +PI+ D  YD L R    +    P+LA     + P 
Sbjct: 13  DARERWNEIAPLVSSAQRAYHSGDEPIVTDEHYDRLVRELRRLEAEHPELAVD---SSPA 69

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
             +G         V H     SL+ ++ ++DL+++              +   T E KID
Sbjct: 70  QSVGAPAAAGFENVAHLERLYSLQDVFTLDDLKEWYE--------GTAGAARCTAEVKID 121

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + +RY  G+ V  A RGDG +GEDV+A +R I ++P+ L  + P+++E+RGEV+I  
Sbjct: 122 GLAVNLRYVGGELVVGATRGDGVTGEDVTANVRTISSVPQSLRGDFPDVVEIRGEVFIPL 181

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTS------E 248
             F + N    A G K +ANPRNAA+G LR+ +P        +F  HG G+        +
Sbjct: 182 AKFDSFNARQRAAGLKEFANPRNAAAGSLRQKDPKVAAERPLDFIAHGAGRIDGTSSAVD 241

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q  + +  +  G PV+  VR  +++  +  +  E   +RS L + IDG V+K+D 
Sbjct: 242 EKLASQKGLYELFQEWGVPVSPYVRLVSSWDDVEGFVREYADLRSDLIHGIDGAVFKIDS 301

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            + Q+ LG  +R PRW +++K+  ++  TRLLDI +Q+GRTG +TP A ++PV + G+ +
Sbjct: 302 RAEQEDLGATSRVPRWAVAYKYPPEEVETRLLDIKVQVGRTGRVTPFAVMKPVTVAGSTV 361

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
             ATLHN   +             + + +GD V+V++AG+VIP+V+  +   R    + +
Sbjct: 362 AQATLHNPSEVAR-----------KGVLIGDVVVVRKAGDVIPEVLGPVSALRDGSEREW 410

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
           + PS CP C + +               RC    +C AQ  ER+ +  SR A ++E LG+
Sbjct: 411 TMPSACPSCGTELA-----PAKDGDVDIRCPNARSCPAQLAERVAYIGSRAALDVEALGE 465

Query: 489 QQLDFFFKSE 498
           +   +    E
Sbjct: 466 ETSLWLTDPE 475



 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 91/233 (39%), Gaps = 12/233 (5%)

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
               +   K E      R+ A     + R+                 +  +   +   R 
Sbjct: 565 WIWQEVRVKGEPTGDFRRVRAAWTKPKWRRPQGKPAELASPSKPGKMIELVVAELQAART 624

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R I +L IRHVG   A+++A  + S            A        + ++  VG +
Sbjct: 625 KELWRKIVALSIRHVGPTAAKAIASSFGSL----------SAAREASVEEMAQIDGVGRV 674

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHK 665
           IAQ+ ++++  P +   VEA             +       ++   +V TG L    R  
Sbjct: 675 IAQSFLDWFDVPWHTEIVEAWEAAGVVFADEAAERQELPQTLKGMTVVATGALAGYTRDS 734

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +E +   G   +  +S+KT  ++VG NPGSK  KA+ LGV  ++E QF  LL
Sbjct: 735 VKEAIEARGGKAAGSVSKKTAAVVVGANPGSKAAKAEALGVPTLDEGQFEELL 787


>gi|295698750|ref|YP_003603405.1| DNA ligase, NAD-dependent [Candidatus Riesia pediculicola USDA]
 gi|291157368|gb|ADD79813.1| DNA ligase, NAD-dependent [Candidatus Riesia pediculicola USDA]
          Length = 593

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 190/634 (29%), Positives = 322/634 (50%), Gaps = 51/634 (8%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +   + LSSL ++I  H   Y+   K  I D EYD + R+ D I     + ++ E+ 
Sbjct: 1   MKKKNIHQYLSSLRKKIKKHQYLYHILGKSEIPDFEYDLMIRKLDRIEKEISEKSKKEEE 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                 I  ++     K+ H  P LSL  ++N  +  KF   I +    ++   I+F  E
Sbjct: 61  T-----ILSDLRRRSKKIKHYSPMLSLNNVFNQHEYLKFYKNILKIINNQE-ERIYFCCE 114

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVR 188
            KIDG  + + Y+ G+F  A+ RG+G +GED+S+ I+ I  IP   R     +PE+IE+R
Sbjct: 115 LKIDGLAVNLVYKNGEFHSASTRGNGETGEDISSKIQYIRDIPLSIRNRKGYVPELIEIR 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLG--- 244
           GE+++    F   N  +    +K ++NPR+AA G++++++  +I R  LNFF +G G   
Sbjct: 175 GEIFMKFKKFQEFNSMLKKEKKKTFSNPRSAAIGLVKKVSQKEIIRESLNFFSYGCGLIK 234

Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
              +    K Q+E L+ ++    P+    +  +    I+ YY  + ++R  L Y IDG+V
Sbjct: 235 LNNTFESPKNQFECLKMLKTWNVPIVENTKMYSCSKKILEYYKNIYNMRDQLDYGIDGIV 294

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KV+ F  QK +G  + +P+W ++ KF  K+  T LLD+  Q+GRTG++TP+A+++ ++ 
Sbjct: 295 IKVNSFIYQKIIGHTSYAPKWSVAFKFPAKKKITTLLDVIFQVGRTGVITPIAKIDTISF 354

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  I   +LHN ++IK L            I +GD+V+V  AG++IPK+   I +    
Sbjct: 355 NGIQINRVSLHNTNFIKDL-----------GIMIGDKVIVSIAGDIIPKITGKIFDSTSN 403

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
                 FP +CP C S    +   K        RCTGGL+C +Q+   + HFVS+ A NI
Sbjct: 404 HINEIVFPKYCPSCFSITQIEKKGK-------IRCTGGLSCLSQRESLINHFVSKKAINI 456

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            G+GK  +    +       I  P+D+++L          + ++ G    +   + +SI 
Sbjct: 457 IGIGKMTVKKMVQKN----LISDPSDLYSL------KFNDLLSLNGITQATSKKILNSIE 506

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP- 602
           K +NI+LERF++SLGI  VG  +++ +A    SYQ F +        ++ +     ++P 
Sbjct: 507 KSKNITLERFLYSLGIPGVGYVLSKKIASNSESYQFFLR-------ISSGEKYLPCKIPF 559

Query: 603 -LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635
             +G  I + I+ F++   N      L K  +  
Sbjct: 560 KGIGKNITENIISFFKKDHNRRMFSKLRKIFNIK 593


>gi|56966058|pdb|1TAE|A Chain A, Structural Rearrangement Accompanying Nad+ Synthesis
           Within A Bacterial Dna Ligase Crystal
 gi|56966059|pdb|1TAE|B Chain B, Structural Rearrangement Accompanying Nad+ Synthesis
           Within A Bacterial Dna Ligase Crystal
 gi|56966060|pdb|1TAE|C Chain C, Structural Rearrangement Accompanying Nad+ Synthesis
           Within A Bacterial Dna Ligase Crystal
 gi|56966061|pdb|1TAE|D Chain D, Structural Rearrangement Accompanying Nad+ Synthesis
           Within A Bacterial Dna Ligase Crystal
 gi|212374930|pdb|3BA8|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+
           Dependent Dna Ligase
 gi|212374931|pdb|3BA9|A Chain A, Structural Basis For Inhbition Of Nad-Dependent Ligase
 gi|212374932|pdb|3BAA|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+
           Dependent Dna Ligase
 gi|212374933|pdb|3BAB|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+
           Dependent Dna Ligase
          Length = 332

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 118/330 (35%), Positives = 183/330 (55%), Gaps = 10/330 (3%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           L++  A      L ++++ +   YY   +P + D  YD L +    I   FPDL     P
Sbjct: 6   LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI---TP 62

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++GG++     K  H IP  SL   ++ ED+  F  R+ +   K     + +  E
Sbjct: 63  DSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYCCE 118

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG  I++RYE G FV  A RGDG  GE+++  +R + ++P  L+  I   +EVRGE 
Sbjct: 119 LKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPIS--VEVRGEC 176

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           Y+ K  F+ALN+E    G+  +ANPRNAA+G LR+L+      R LN F++ +     + 
Sbjct: 177 YMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
           AK Q+E L+++  +GF  N   +   +   + +Y  E    RSTLPY+IDG+V KV+EF+
Sbjct: 237 AKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFA 296

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLL 340
           LQ +LG   ++PRW I++KF  ++A T L 
Sbjct: 297 LQDELGFTVKAPRWAIAYKFPPEEAETVLE 326


>gi|4235380|gb|AAD13193.1| NAD-dependent DNA ligase [Thermus sp. Vil3]
          Length = 505

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 183/547 (33%), Positives = 289/547 (52%), Gaps = 46/547 (8%)

Query: 70  DPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            P+ P  ++G +   +    + H     SL+  + +E++R F  RI R   +K      +
Sbjct: 2   SPDSPTEQVGAKPLEATFRPIRHPTRMYSLDNAFTLEEVRTFEERIERALGRK--GPFVY 59

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
           T+E K+DG  + + YE+G  V+ A RGDG +GE+V+  +  IPTIPR L    PE +EVR
Sbjct: 60  TVEHKVDGLSVNLYYEEGILVWGATRGDGETGEEVTQNLLTIPTIPRRLKGV-PERLEVR 118

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247
           GEVY+    FL LN+E+   G K + NPRNAA+G  R+ +P     R L    + LG   
Sbjct: 119 GEVYMPIEAFLRLNEELEEKGEKIFKNPRNAAAGSFRQKDPRITARRGLRATFYALGLGL 178

Query: 248 EIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
           E    K Q ++L  +R  GFPV +G  +A    G+   Y      R +LP++ DG+V K+
Sbjct: 179 EESGLKTQLDLLHWLREKGFPVEHGFARAEGAEGVERIYQGWLKERRSLPFEADGVVVKL 238

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           DE SL ++LG  AR+PR+ I++KF  ++  T L  + +Q+GRTG +TPV  LEPV I G+
Sbjct: 239 DELSLWRELGYTARAPRFAIAYKFPAEEKETALFQVVLQVGRTGQVTPVGILEPVFIEGS 298

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++  TLHNE YI+ L           D+R+G+ VLV  AG VIP+V+ ++  +R  + +
Sbjct: 299 EVSRVTLHNESYIEDL-----------DVRIGEWVLVHNAGGVIPEVLRVLKEKRTGEER 347

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P  +P  CP C  R+V++           HRC   L C A++ E ++H+ SR A +I GL
Sbjct: 348 PIRWPETCPECGHRLVKE--------GKVHRCPNPL-CPAKRFEAIRHYASRKAMDIGGL 398

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G++ ++   +       ++  AD++ L+            +   G  S  NL   I K +
Sbjct: 399 GEKLIEKLLEK----GLVKDVADLYRLKEEDLVG------LERMGKKSAQNLLRQIEKSK 448

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
              LER +++LG+  VG  +AR+LA ++ +     +     +           +V  VG+
Sbjct: 449 ARGLERLLYALGLPGVGEVLARNLAAHFGTMDRLLEASLEELL----------QVEEVGE 498

Query: 607 IIAQAIV 613
           + A+ I 
Sbjct: 499 LTARGIY 505


>gi|145627934|ref|ZP_01783735.1| DNA ligase [Haemophilus influenzae 22.1-21]
 gi|144979709|gb|EDJ89368.1| DNA ligase [Haemophilus influenzae 22.1-21]
          Length = 346

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 137/381 (35%), Positives = 216/381 (56%), Gaps = 38/381 (9%)

Query: 339 LLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVG 398
           + D++ Q+GRTG +TPVA+LEPV + G  ++NATLHN D I+ L           +I +G
Sbjct: 1   MNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERL-----------NIAIG 49

Query: 399 DRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           D V+++RAG+VIP+++ ++   R  +A+P  FP+ CP+C S+++R          A  RC
Sbjct: 50  DTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIEGE------AVARC 103

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
           TGGL C+AQ+ E LKHFVSR A +I+G+G + ++     E     I  PAD+F L     
Sbjct: 104 TGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRE----LIHTPADLFKL----- 154

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578
              T +  +   G  S  N  +S+   ++ +L RFIF+LGIR VG   A +LA ++ +  
Sbjct: 155 -DLTTLTRLERMGAKSAENALNSLENAKSTTLARFIFALGIREVGEATALNLANHFKTLD 213

Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-PSIG 637
                          +   L +VP VG+++A  I  F++   N+  VE L+ +       
Sbjct: 214 ALKDA----------NLEELQQVPDVGEVVANRIFIFWREAHNVAVVEDLIAQGVHWETV 263

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697
             ++   +  ++K +V TGTL ++ R++A+  + QLGA VS  +S KTD +I GD  GSK
Sbjct: 264 EVKEASENLFKDKTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSK 323

Query: 698 LEKAQQLGVKIMNEEQFLFLL 718
           L KAQ+L + ++ EE+FL  +
Sbjct: 324 LAKAQELNITVLTEEEFLAQI 344


>gi|6573451|pdb|1B04|A Chain A, Structure Of The Adenylation Domain Of An Nad+ Dependent
           Ligase
 gi|6573452|pdb|1B04|B Chain B, Structure Of The Adenylation Domain Of An Nad+ Dependent
           Ligase
          Length = 318

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 115/327 (35%), Positives = 180/327 (55%), Gaps = 11/327 (3%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +  +QA +  + L + ++ +   YY   +P + D+EYD L +   AI   +P+L  S   
Sbjct: 1   MDRQQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTS--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  +IGG    +  KV H +P +SL   +   DLR F  R+      ++     +  E
Sbjct: 58  DSPTQRIGGPPLEAFRKVAHRVPMMSLANAFGEGDLRDFDRRVR-----QEVGEAAYVCE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
             IDG  +++RYE G FV  A RGDG +GED++  ++ I ++P  L   +   +E RGE 
Sbjct: 113 LAIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLKEPVS--LEARGEA 170

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIF 250
           ++ K  FL LN+E  A G + +ANPRNAA+G LR+L+P    +R L+ FV+GL     + 
Sbjct: 171 FMPKASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALG 230

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E L  ++ LGF VN   R+      ++++ +E    R  LPY+IDG+V KVD F+
Sbjct: 231 IASHSEALDYLQALGFKVNPERRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFA 290

Query: 311 LQKQLGERARSPRWMISHKFAEKQAST 337
            Q+ LG  A+SPRW I++KF  ++  T
Sbjct: 291 QQRALGATAKSPRWAIAYKFPAEEVVT 317


>gi|217032016|ref|ZP_03437517.1| hypothetical protein HPB128_187g43 [Helicobacter pylori B128]
 gi|216946326|gb|EEC24932.1| hypothetical protein HPB128_187g43 [Helicobacter pylori B128]
          Length = 458

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 156/484 (32%), Positives = 237/484 (48%), Gaps = 32/484 (6%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +++KE       ++     YY    PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3   KSQKEYLERIAYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
            K+G     S  K +H +   SL+ ++N  +L+ ++ RI      K   S  F   PK+D
Sbjct: 60  QKVGAITTNSFNKNSHLMRMWSLDDVFNQSELQAWLQRI-----LKAYPSASFVCSPKLD 114

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  + + Y+ GK V A  RG+G  GE V+   + I  IP    +     IE+RGEV ISK
Sbjct: 115 GVSLNLLYQHGKLVKATTRGNGLEGELVTNNAKHIANIPH--FIAYDGEIEIRGEVIISK 172

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254
            DF ALN E +      +ANPRNAASG LR+L+      R L F   G+GK   +     
Sbjct: 173 KDFDALNQERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGK-HSLNFLSF 231

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L  +  LGF     +        I   Y+ +   R      +DG+V  VDE  +QK+
Sbjct: 232 KECLDFIVSLGFSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVDELDIQKE 291

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG   +SP++  ++KF   +  T+++ +  Q+GR+G +TPVA LEP+ I GA+I  ATLH
Sbjct: 292 LGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMINRATLH 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   I+            ++I + DRV+V R+G+VIPK++  + + R         P  C
Sbjct: 352 NYSEIEK-----------KNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVC 400

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC   ++ +                 L C A+  E L HF S+DA NI+GLG + ++  
Sbjct: 401 PICSHELLCEE---------IFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQL 451

Query: 495 FKSE 498
           F+ +
Sbjct: 452 FEEK 455


>gi|323226774|gb|EGA10965.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
          Length = 338

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 206/373 (55%), Gaps = 40/373 (10%)

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG +TPVARLEPV + G L++NATLHN D I+ L            +R+GD+V+++RAG+
Sbjct: 1   TGAITPVARLEPVQVAGVLVSNATLHNADEIERL-----------GLRIGDKVVIRRAGD 49

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           VIP+VV+++++ER  + +P  FP+ CP+C S V R          A  RCTGGL C AQ+
Sbjct: 50  VIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGE------AVTRCTGGLICGAQR 103

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
            E LKHFVSR A +++G+G + +D   + E     +  PAD+F L         K+  + 
Sbjct: 104 KESLKHFVSRRAMDVDGMGDKIIDQLVERE----YVHTPADLFRLTA------GKLTGLD 153

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
             G  S  N+ +++ K +  +  RF+++LGIR VG   A  LA Y+ + +          
Sbjct: 154 RMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAAT---- 209

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSS 645
                    L +VP VG ++A  +  F+    N   +  LL E       +  + + + S
Sbjct: 210 ------IDELQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDS 263

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
               K +V TG+L ++ R  A+  +  +GA V+  +S+KTD++I G+  GSKL KAQ+LG
Sbjct: 264 PFAGKTVVLTGSLSQMSRDDAKARLVAVGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELG 323

Query: 706 VKIMNEEQFLFLL 718
           + +++E + + LL
Sbjct: 324 ITVIDEAEMIRLL 336


>gi|218460243|ref|ZP_03500334.1| NAD-dependent DNA ligase LigA [Rhizobium etli Kim 5]
          Length = 327

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 136/314 (43%), Positives = 202/314 (64%), Gaps = 4/314 (1%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
             +   ++ L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   F
Sbjct: 2   STEGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEARF 61

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P+L R    + P   +G   +++   VTH+ P LSL+  ++ ED++ F+  +YRF  +  
Sbjct: 62  PELIRE---DSPSRHVGAAPSVTFSPVTHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLP 118

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
           D SI FT EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P
Sbjct: 119 DQSIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVP 178

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
            ++E+RGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +
Sbjct: 179 AVVEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAY 238

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
             G+ SE+    Q+ M+Q  +  GFPVN  +++ N+   I+++Y+E+   R  L YDIDG
Sbjct: 239 AWGEMSEMPEDTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDG 298

Query: 302 LVYKVDEFSLQKQL 315
           +VYKVD   LQ++ 
Sbjct: 299 VVYKVDSLELQRRP 312


>gi|218777900|ref|YP_002429218.1| DNA ligase (NAD(+)) [Desulfatibacillum alkenivorans AK-01]
 gi|254781309|sp|B8FKD5|DNLJ_DESAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218759284|gb|ACL01750.1| DNA ligase (NAD(+)) [Desulfatibacillum alkenivorans AK-01]
          Length = 631

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 151/715 (21%), Positives = 279/715 (39%), Gaps = 113/715 (15%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L Q +  +++ Y +  KP+I D+ YD L  R   IA     L+           +  E  
Sbjct: 17  LGQWLEKYNEAY-RAGKPMISDAHYDLLVERLREIAPDHGFLSA----------VEAETF 65

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               +V H  P LS EK ++ + L +F+ R+Y+   +     + F + PK+DG       
Sbjct: 66  ADKREVRHPAPMLSTEKAYDKQSLERFVERVYKEAAQIGVTDVLFQVTPKLDGLAAR--- 122

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
           + G+    A RG+G++G D++        IP+              E+   ++ F     
Sbjct: 123 DDGQI--LATRGNGYAGYDIT-NALEKGVIPQGGRGLGLG------EIVAVQSYFQENLA 173

Query: 204 EMIAVGRKPYANPRNAASGILRRL------NPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           +        + +PRN   GI+               + ++F  +                
Sbjct: 174 DR-------FEHPRNMVVGIISSDVLNISAKQALEDKQVHFVPYA--------------T 212

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L K    G  +     +                +     Y +DG+V  V    ++  +G 
Sbjct: 213 LNKWEGSGKELLENSEKITQ------------DLIQATDYPMDGMVASVMNQDVRDHMGA 260

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +   RW I+ K   +   T +  I  Q+GRTG +TPV  +EP+ + GA I   T HN  
Sbjct: 261 TSHHYRWQIAIKAKGETGVTTVNAITWQVGRTGNVTPVLEVEPLKLSGATIRRVTAHNAG 320

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I+            +   VG  + V R+GEVIPK+ +++       +     P  CP+C
Sbjct: 321 RIR-----------EKGAGVGASIEVIRSGEVIPKLENVLTP-----SDDTLIPENCPVC 364

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           ++ +  + +               L C A+  +R++H+  R   N +  G + ++     
Sbjct: 365 ETPLEWNND---------FLKCPNLNCKARVEQRIRHWF-RILGNADWFGIKTVERLVAG 414

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              +        I+ +      S        G           +++K R +   RF+ + 
Sbjct: 415 GFDSL-----EKIYAMTEEDFLS-----LEFGPVQSKNLAEAINLSKSRPVEDWRFLAAF 464

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI  +G   +R +  ++   +    +              ++ +   GD+ + +I +  +
Sbjct: 465 GISDLGEGDSRKILSFFP-LEELLDKTR----------DDIVALHGFGDVTSISIEKGLK 513

Query: 618 N--PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
              P     ++ L   + P+  + E +VSS I  K +VFTG+++   R   +E    LGA
Sbjct: 514 ALGPTIRHMLD-LGFNLQPTPLKSEMDVSSPISGKGVVFTGSMETGSRKDMEENARSLGA 572

Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
            V   ++ KTD +I G   G  K +KAQ LGV ++ E+++L L++   +      
Sbjct: 573 NVQKAVTGKTDYLICGAKVGAKKTQKAQDLGVTVLTEQEYLQLVEGGESQSSPEQ 627


>gi|317455470|pdb|3PN1|A Chain A, Novel Bacterial Nad+-Dependent Dna Ligase Inhibitors With
           Broad Spectrum Potency And Antibacterial Efficacy In
           Vivo
          Length = 318

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 104/322 (32%), Positives = 175/322 (54%), Gaps = 7/322 (2%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   ++       +G+G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
               Y  LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +
Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296

Query: 311 LQKQLGERARSPRWMISHKFAE 332
           LQ +LG  +++PRW I++KF  
Sbjct: 297 LQNELGFISKAPRWAIAYKFPA 318


>gi|281414408|ref|ZP_06246150.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
          Length = 549

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 145/549 (26%), Positives = 229/549 (41%), Gaps = 93/549 (16%)

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGI-----VSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           Q+E    +   G PV+   R+            V+   E    R  L ++IDG+V K D 
Sbjct: 10  QHEAYDALASWGLPVSPYTRRVEGADEEALAAVVAVIEEYGRRRHELIHEIDGIVLKADA 69

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F+ Q+ LG  +R PRW  ++K+  ++  T L DI + +GRTG +TP A LEPV + G+ +
Sbjct: 70  FADQRYLGHTSRVPRWAAAYKYPPEEVHTLLRDIAVSVGRTGRVTPFAVLEPVTVAGSTV 129

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP----- 423
           + ATLHN+D +K            + + +GD V+V++AG+VIP+VV  ++  R       
Sbjct: 130 SLATLHNQDVVK-----------AKGVLIGDTVVVRKAGDVIPEVVGPVLPLREKAIEAG 178

Query: 424 -DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
            + + F  P+ CP C + +         +     RC    +C AQ   R++H  SR AF+
Sbjct: 179 RELREFVMPAHCPSCGTPLA-----PAKEGDVDLRCPNARSCPAQLAGRVEHLASRGAFD 233

Query: 483 IEGLGKQQLDFF-------------FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
           +E LG++   +                  +    I   A IF L      + T      G
Sbjct: 234 VEALGEEAARWLVQGPGEDPAEHEGHVRPEGPGPITAEAQIFDLASGTPEAITGPRGEDG 293

Query: 530 -----------------------------------------------FGDVSVTNLYDSI 542
                                                              +   L+D +
Sbjct: 294 LTDLQRSLGAVRVWREGRTKVDGRMVPSGVFTLKPYFFTAGTAKRPSAPTANTLRLFDEL 353

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K ++  L R + +L IRHVG   ARSLA  + S                 D   L  + 
Sbjct: 354 EKAKSQPLWRTLVALSIRHVGPTAARSLATAFGSMTALRAAAEA------GDRDRLAEID 407

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
            VG IIA A++E++    +   V+             +++    +E   +V TG+L+   
Sbjct: 408 GVGPIIADALIEWFAEDWHREIVDRWTAAGVAMEDEQDESTPRTLEGLTVVVTGSLEGFS 467

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R  A+E +   G   S  +S+KTD ++ G+  GSKL+KAQ LGV ++  EQ   LL    
Sbjct: 468 RDSAKEAILVRGGKASGSVSKKTDFLVAGEAAGSKLDKAQSLGVPVLEPEQVTALLAGGP 527

Query: 723 TTLRIHDDD 731
             +R  D D
Sbjct: 528 DAVRPADTD 536


>gi|37788926|gb|AAO65604.1| hypothetical NAD-dependent DNA ligase [Candidatus Phytoplasma
           solani]
          Length = 495

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 175/533 (32%), Positives = 279/533 (52%), Gaps = 41/533 (7%)

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFA 251
           +S   F  LN +     + P+ANPRNAASG LR+LN      R L+ F++ +     I  
Sbjct: 1   LSYPAFEKLNQKQKENNKTPFANPRNAASGTLRQLNSKIVAQRNLSIFIYNIASPYLIKP 60

Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
             Q   L+ +  LGF VN     A TF  ++      K I+ T PYD DG+V KV+E +L
Sbjct: 61  T-QLASLEFLIQLGFTVNPHYNLALTFEDLLVKIQNYKVIKDTQPYDTDGVVIKVNELAL 119

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
              +G  +++P+W I++KF  K + + + DI  Q+GRTG++TP+ ++ PV + G+LI+  
Sbjct: 120 HALIGATSKAPKWAIAYKFPAKTSQSIVTDIIFQLGRTGMITPICQIMPVLVDGSLISKV 179

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
            LHN D+I             +DIR+GD V V +AG VIP++++++ ++R  + +     
Sbjct: 180 VLHNYDFISK-----------KDIRIGDCVTVHKAGSVIPEILEVVASKRT-NQKKTMMI 227

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
             CP C+S +V        K            C  Q+++RL HFVS+ A +I  LG++ +
Sbjct: 228 LQCPYCKSNLV-------KKEGKVDYFCLNDDCYWQKIQRLIHFVSKKAMDINVLGEKTI 280

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
              F        I+ P+D++ L          ++ +  FG   + N+  +I + +   LE
Sbjct: 281 ITLFNQ----HLIQKPSDLYLLHTHLNI----LQTLPSFGQKKINNILKAIEQSKTKPLE 332

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R +F LGI+HVG +I++ L K  LS +  A               +L  +P +GD IA++
Sbjct: 333 RVLFGLGIKHVGEKISQVLVKNNLSLEKLATI----------KLEALTAIPEIGDKIAKS 382

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEY 669
           I  F+ NPRNI  ++ L +          + V   +   +KK+V TGTLQ   R +  + 
Sbjct: 383 INIFFNNPRNIAEIQKLQQLGVSFQNTINQTVVKKTFFSDKKIVLTGTLQNYTRLELTQI 442

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + Q+GA +S+ LS KTD +I G N GSKL KAQ+L + I+ E Q    ++Q +
Sbjct: 443 LKQMGANISSSLSAKTDFLIAGTNAGSKLTKAQKLKISIIEEAQLEKWIKQTD 495


>gi|148989161|ref|ZP_01820551.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae SP6-BS73]
 gi|147925384|gb|EDK76462.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae SP6-BS73]
          Length = 374

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 117/361 (32%), Positives = 187/361 (51%), Gaps = 11/361 (3%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           ++ L   ++ +   YY    P + DSEYD L R    +  A+P+   +   + P +++GG
Sbjct: 1   MNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLA---DSPTHRVGG 57

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           ++     K +H  P  SL+  ++ E+L  F  R+ +           +  E KIDG  I+
Sbjct: 58  KVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHP-----TYICELKIDGLSIS 112

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + YEKG  V    RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F  
Sbjct: 113 LTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEEL--DITVRGECYMPRASFDQ 170

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q + L+ 
Sbjct: 171 VNQVRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKGLKY 229

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +  LGF VN     A     I ++  E+   R  LPYDIDG+V KV++ + Q++LG   +
Sbjct: 230 LEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVK 289

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +P+W +++KF  ++   +LL +D  +GRTG++TP A L PV + G  ++ ATLHN DYI 
Sbjct: 290 APKWAVAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIA 349

Query: 381 G 381
            
Sbjct: 350 E 350


>gi|317470612|ref|ZP_07929998.1| DNA ligase [Anaerostipes sp. 3_2_56FAA]
 gi|316901903|gb|EFV23831.1| DNA ligase [Anaerostipes sp. 3_2_56FAA]
          Length = 559

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 145/570 (25%), Positives = 258/570 (45%), Gaps = 49/570 (8%)

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
           G+G  GE V+   +    +P    +     + +RGE  I  +DF  +N++M  +    Y 
Sbjct: 34  GNGEVGEVVTNNAKVFVNLP--KKIAYKGTLVIRGEAVIHYSDFRRMNEDMEDLD-SRYK 90

Query: 215 NPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ-YEMLQKMRCLGFPVNNGV 272
           NPRN  SG +R+LN      R + F+   +    ++       E     R LGF + + V
Sbjct: 91  NPRNLCSGSVRQLNNEVTAKRNVRFYGFSVADVPDVDFHNSVEEKFIWARSLGFDIVDYV 150

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
                                      DGLV   D+ +  + LG  A+ PR  I+ K+A+
Sbjct: 151 AVTKDTVA--EEVERFSQAIENNDQPSDGLVLIYDDIAYGRSLGTTAKFPRDSIAFKWAD 208

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
           + A T L +I+    RTG++ PVA  +PV + G+ ++ A+LHN   ++ L+         
Sbjct: 209 EIAETTLKEIEWSPSRTGLINPVAIFDPVELEGSTVSRASLHNISVMEELE--------- 259

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
             + VGD++ V +A  +IP++       R  DA     P  CP C  +          + 
Sbjct: 260 --LGVGDQISVYKANMIIPQL--AENQTRSGDAP---IPDTCPACGGKT-----EIEEEN 307

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
                      CSA++++   HFVSRDA N++GL +  L            +    D+FT
Sbjct: 308 GIRTLVCPNQFCSAKKIKLFSHFVSRDAMNVDGLSEASLHKMMDK----GLLNELYDLFT 363

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L+  ++    +I  + GFG+ S       +   + ++L +F++SLGI +VG   A+ + +
Sbjct: 364 LKEHKE----EIIEMEGFGEKSFIIWRMPLRGTKKVTLPKFLYSLGIANVGLSNAKLICR 419

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
           Y+          +++ A  N +      +  +G II +A+  +++   N   V+ LL+ V
Sbjct: 420 YFE---------DDLDAIRNAEAEDFTAIDGIGPIIGEAVSGYFRLENNKQTVDRLLQYV 470

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
                R  +     ++ K  V TG+L+    R + QE +  LG   +  +++KTD +I  
Sbjct: 471 EIE-KRQTEETEKLLDGKTFVITGSLEHYENRKQLQEQIEILGGKATGSVTKKTDYLINN 529

Query: 692 DN--PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +     SK +KA +L + I+ EE+F+ +++
Sbjct: 530 NKNSASSKNKKAMELSIPIITEEEFMDMIK 559


>gi|163784741|ref|ZP_02179548.1| DNA ligase (NAD dependent) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879989|gb|EDP73686.1| DNA ligase (NAD dependent) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 414

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 155/419 (36%), Positives = 226/419 (53%), Gaps = 32/419 (7%)

Query: 2   KKRQL--IPIEAL-SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
           K RQL  I IE L + E A K ++ L + I YHD  YY  + P+I D EYD L     +I
Sbjct: 13  KTRQLLKISIEDLKTKEDAEKIINDLREVIKYHDWKYYVLANPVISDYEYDKLFHLLVSI 72

Query: 59  AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
              +P+L  +   + P  ++   +     KV H  P LSLE  +N EDLR F  R+    
Sbjct: 73  EKKYPELITA---DSPTQRVPSGLIKEFPKVKHLAPMLSLENSYNEEDLRDFDRRVKEIT 129

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP--RV 176
                + I +++EPK DG  I + YE   FV  A RGDG  G+D++  ++ I TIP    
Sbjct: 130 GL---DEIEYSVEPKFDGAGIALVYENNLFVRGATRGDGAVGDDITPNLKVIRTIPLSAD 186

Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRY 235
                 + IE+RGEV I+K  F  +N E +  G   +ANPRNAA+G LR  NP +   R 
Sbjct: 187 FEKYGIKTIEIRGEVLINKELFKKINQERLEEGLPLFANPRNAAAGSLRLQNPKEVAKRG 246

Query: 236 LNFFVHGLGKTSEIFAKG--------QYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYN 286
           L  FV+ +  T +               E ++ +  LGF      ++       ++ Y N
Sbjct: 247 LEAFVYQITYTVDENENNLLGTKLKKHSESIKMLYELGFKSPYKEIKVCKNIDEVIDYCN 306

Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQI 346
           + +  R + PY+IDG+V KV++ SL   LG  +  PRW I++KF  +QA+T+L+D+  Q+
Sbjct: 307 QWQEKRDSYPYEIDGMVVKVNDISLYDTLGATSHHPRWAIAYKFQARQATTKLIDVVFQV 366

Query: 347 GRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKR 405
           GRTG +TPV +LEPV IGG ++++ +L NED+IK            +DIR+GD VLV+R
Sbjct: 367 GRTGAITPVGKLEPVEIGGVVVSSVSLINEDFIK-----------EKDIRIGDLVLVER 414


>gi|317968249|ref|ZP_07969639.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CB0205]
          Length = 372

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 114/406 (28%), Positives = 197/406 (48%), Gaps = 39/406 (9%)

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             ++PRW I+ K+  ++A ++LL +  Q+GRTG++TPVA  EPV + G  ++ ATLHN D
Sbjct: 1   TQKAPRWAIALKYPAEEAPSKLLRLSCQVGRTGVITPVAEFEPVPLAGTSVSRATLHNAD 60

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            +  L           D+  GD ++V++AGE+IP+VV ++   R   A+    P  CP C
Sbjct: 61  RLLEL-----------DLHAGDTIVVRKAGEIIPEVVRVLPELRPAAAERLELPHTCPEC 109

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +VR+         AA RC    +C A     L+H+VS+ A +++GLG + ++     
Sbjct: 110 GSELVREEGE------AATRCVNS-SCPAILRGALRHWVSKGALDVDGLGSKLIEQLVDR 162

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +   A ++ L      S      +   G  S  NL  ++   +     R ++ L
Sbjct: 163 ----GLVGSIAGLYRLDCALLCS------LERMGSKSAENLVAALADSKQQPWHRQLYGL 212

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI HVG   A++LAK + S  + +           +   ++  V  +G  IAQ++ +++ 
Sbjct: 213 GIHHVGEVNAKALAKAFPSAADLSTA-------ATETPEAITAVYGIGAEIAQSLQQWFS 265

Query: 618 NPRNICAVEALLKEVSP----SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
              N   + +L +           + E +  + +  +  V TGTL  + R +AQ  +   
Sbjct: 266 TGANQELLTSLERLGFSLASGDEEQPEPSGPAPLTGQTFVLTGTLPSLSRSQAQALIEAA 325

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           G  V+  +S+KT  ++ G+  GSKL KA+ LG+ +++E     LL 
Sbjct: 326 GGKVTGSVSKKTSYVVAGEEAGSKLSKAESLGIPVLDEASLQALLA 371


>gi|95930744|ref|ZP_01313477.1| DNA ligase (NAD+) [Desulfuromonas acetoxidans DSM 684]
 gi|95133224|gb|EAT14890.1| DNA ligase (NAD+) [Desulfuromonas acetoxidans DSM 684]
          Length = 690

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 151/709 (21%), Positives = 280/709 (39%), Gaps = 111/709 (15%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDAL-KRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           + L + ++  +  +Y+  +P+I D +YD +          + P L          + +  
Sbjct: 70  AELVEFLTIAN-SFYRDGQPLISDHDYDHIALAELKTRQPSHPFL----------HTVEP 118

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--IFFTLEPKIDGTM 138
           E   +   V      LS EK +  ++L  ++ RI++   +   +   + F + PK+DG  
Sbjct: 119 EPKFTGKTVELPARMLSTEKAYTDKELSDWLKRIHKAANEIGRDPAGLQFRITPKLDGFA 178

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
               ++ G       RGDG  G D++        +       +       GE+ + ++ F
Sbjct: 179 A---FDDGD--RLYTRGDGRRGTDITRAFERGLVVANNQPRGLGA-----GEIVVQRSYF 228

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
            A   +        Y NPRN  + +++                 +               
Sbjct: 229 AANLAQ-------DYENPRNFQASVVKEKALEPAVEQALGNQAVVFYPFSTLP------- 274

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
                         R   +   I S     + +R++L YD+DG+V ++ +  L+  +G  
Sbjct: 275 -------------YRVRRSDDLIDSVAALSRELRASLDYDMDGIVIEITDDELKTYMGAT 321

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
               RW I++K  +++A  ++L +  Q  R+G + PVA +EP  + GALI  AT H+   
Sbjct: 322 RHHHRWQIAYKQNQEKAEVKVLQVVPQTSRSGRVNPVAEVEPTRLSGALIQRATAHHYGM 381

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           ++            + I     + + R+GEVIPK++D++       A     P+ CP C 
Sbjct: 382 VR-----------DKGIGPDAVIELTRSGEVIPKIIDVV------KAVEPQIPASCPSCD 424

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           + +  D +           C     C AQ    ++HF  R   NI+G G   ++  + + 
Sbjct: 425 TELFWDSD--------YLYCPNNTGCPAQISHTIEHFF-RTLGNIDGFGPATIEKLYTNN 475

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI--SLERFIFS 556
                IR    ++ LQ  Q           GFG     NL + + + R+      RF+ +
Sbjct: 476 -----IRTIDAVYGLQADQLEGM-------GFGPKQSENLVNELQRSRHEVIEDWRFLAA 523

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
            G+  +G      L  ++   +   +               ++ +    +  A+ +V+ +
Sbjct: 524 FGVFRMGGGNCERLLGHHR-LEEIFELSE----------EQIVAIEGFAERTAEVVVKGF 572

Query: 617 QNPRNICAVEALLKEV-----SPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEYV 670
              R     + L         +P +   + + + + I  K LVFTGT+    R   +   
Sbjct: 573 A--RIRPLFDKLQALGFNLQRTPLVSELQASGALNPIAGKLLVFTGTMTHGSRDDMKAEA 630

Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            +LGA V A ++ KTD ++ GD  G SKL  A   GV+I+ EEQ+L L+
Sbjct: 631 KKLGAKVGASVTGKTDYLVTGDKVGASKLNAATSKGVEILTEEQYLKLI 679


>gi|257439785|ref|ZP_05615540.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165]
 gi|257197805|gb|EEU96089.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165]
          Length = 449

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 137/488 (28%), Positives = 235/488 (48%), Gaps = 41/488 (8%)

Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           ++ FV  + +          E L  ++ LG PV+      +     ++   ++   R+ L
Sbjct: 1   MSIFVFNVQQVRGRELTSHAESLDYLKSLGLPVSPRYHIVHDIEDAIAEIEQIGQNRAAL 60

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
            +D+DG V KV+ F+ ++ LG   + PRW I+ K+  +   T L  I++ +GRTG+LTP 
Sbjct: 61  DFDMDGAVIKVNNFAQRELLGSTNKFPRWAIAFKYPPEVKETTLRSIEVGVGRTGVLTPT 120

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A  +PV + G  ++ ATLHNED+I+ L            + +GD + V++AG++IP+V+ 
Sbjct: 121 ACFDPVFLAGTTVSRATLHNEDFIRQL-----------GLCIGDTIQVRKAGDIIPEVIG 169

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           +  +E  PDAQP+  P FCP C +  V   +       AA RC      +      + HF
Sbjct: 170 VTRHE--PDAQPYQMPEFCPSCGAPAVHLEDE------AALRCVNPECPAQAL-RNIIHF 220

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
            SRDA +I+GLG                +   AD++ L   Q  +      +  F + S 
Sbjct: 221 ASRDAMDIDGLGTMVATQLVDK----GLVHSAADLYDLTIEQLLT------LEKFKEKSA 270

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            NL  +I   +  +L++ +F+ GIR++G + A  LA+++ S Q   +             
Sbjct: 271 NNLLQAIEASKQNNLDKLMFAFGIRNIGDKAAALLAEHFGSLQAIREATE---------- 320

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
             +  +   G ++AQ++ EF+        V  L         + E     ++  K LV T
Sbjct: 321 EQIGEIDGFGGVMAQSVTEFFAKDGTTDLVHRLADAGVNMQWKGEPKGD-KLAGKTLVVT 379

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL+ + R +A+  + + G   S  +S+KT  ++ G   GSKL KAQ LGV ++ E +FL
Sbjct: 380 GTLETLSRSEAEALIVKNGGKASGSVSKKTAYVVAGAAAGSKLTKAQALGVPVLTEVEFL 439

Query: 716 FLLQQYNT 723
            ++ +  +
Sbjct: 440 AMIAEDKS 447


>gi|294669029|ref|ZP_06734115.1| DNA ligase, NAD-dependent [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291309021|gb|EFE50264.1| DNA ligase, NAD-dependent [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 730

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 214/769 (27%), Positives = 335/769 (43%), Gaps = 191/769 (24%)

Query: 102 WNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGE 161
           ++  ++  F  R+       D ++  + +EPK DG  I++ Y  G  V AA RGDG +GE
Sbjct: 2   FDHAEMYAFDQRVRDGL---DGSNPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGE 58

Query: 162 DVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220
           DV+  ++ +  IP  L   N PE+IEVRGEV + K DF ALN      G+KP+ANPRNAA
Sbjct: 59  DVTQNVKTVANIPLRLHGENPPELIEVRGEVLMLKADFAALNKRQAENGQKPFANPRNAA 118

Query: 221 SGILRRLN-PTDITRYLNFFVHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTF 278
           +G LR+L+      R L+FF + + +      A+   + L   + LGF + NG       
Sbjct: 119 AGSLRQLDSRITAQRKLHFFPYSVARQQGGFEAEEHIQELAYFQELGFSLPNGNFGCFKN 178

Query: 279 HGIVSYYNEMKSIRSTL-PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAST 337
              V  + E    +    PY+IDG+V KV+  + Q++LG  +R+PRW I+HKF  ++A T
Sbjct: 179 IDEVLAFYEQMQQKRPELPYEIDGMVVKVNSLAQQRELGFISRAPRWAIAHKFPAEEALT 238

Query: 338 RLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRV 397
            +  ID+QIGRTG +TPVARL PV +GG  +TNATLHN+D +             +D+RV
Sbjct: 239 IVEAIDVQIGRTGAVTPVARLHPVFVGGVTVTNATLHNQDEVSR-----------KDVRV 287

Query: 398 GDRVLVKRAGEVIPKVVDIIVNERHPDA-------------------------------- 425
           GD V+V+RAG+VIP+VV +I   R                                    
Sbjct: 288 GDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDDLKQQQDDLFAETPSANQTQSVPLH 347

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
           +P+  P+ CPIC+S + R+         A  RC+GG+ C AQ+ + L HF SR A +I+G
Sbjct: 348 KPYRLPTHCPICRSEIEREEGE------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDG 401

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI------------------ 527
           LG++Q++     +     +R  AD++ L         +  +                   
Sbjct: 402 LGQKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKGSSENENGDAETVSDDLS 457

Query: 528 -------LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580
                           N+   I   +   L RF+F+LGIRHVG   A++LA+ + S ++ 
Sbjct: 458 ESNTPNGKKQPTKWAENILAGIEASKTPELARFLFALGIRHVGERTAKTLAQAFGSLEHV 517

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS------- 633
            +    I+A           +P +G ++A++I  F+        ++ LL           
Sbjct: 518 RRAPEPILAC----------LPDIGTVVARSIAHFFAQDAQQAMIDELLAAGVAPQTQAV 567

Query: 634 -------------------PSIGRHEKNVSSEIENKKLVFTGTLQKIQ---------RHK 665
                                I  ++     E+  K +     LQ  +         R +
Sbjct: 568 TIPPARHAEPQRWIARLPGFKISENKAQALWELAGKSI---DGLQTDKALPADWQIWRSE 624

Query: 666 AQ--EYVTQLGAVV----SAI--------------LSRKTDIIIVG-------------- 691
           AQ    +  L        ++               ++ KT  ++ G              
Sbjct: 625 AQNAALLENL--KSFFAQTSSENQEATISDDVNEAVAGKT-FVLTGTLPTLKRDQAQALI 681

Query: 692 DNPGSK---------------------LEKAQQLGVKIMNEEQFLFLLQ 719
           +  G K                     LEKA  LGV +++EE+ L +L+
Sbjct: 682 EAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVAVLSEEELLAMLK 730


>gi|322379217|ref|ZP_08053608.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS1]
 gi|321148357|gb|EFX42866.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS1]
          Length = 680

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 161/696 (23%), Positives = 273/696 (39%), Gaps = 95/696 (13%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++   L  ++  +   YY  + P+I D+ YD L R+       +P       P  P  ++
Sbjct: 6   EDYKHLVDKLCQYAYHYYVLASPLISDAIYDQLYRQVLDYETKYPQNIL---PYSPTQRV 62

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-----------IF 127
           GG +  +L K TH +   SLE ++N+E+L+ +I RI                        
Sbjct: 63  GGVVLETLPKHTHKVRMWSLENVFNLEELQVWINRIVESEHALKTKGRISQTYPSASFTR 122

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
           FT  PK+DG  + + YE G+   A++RG+G  GE V+   + I +IP  L +   + IE+
Sbjct: 123 FTCSPKLDGASLNLYYENGQLQSASMRGNGLEGELVTHNAKTIHSIP--LIIPYTKPIEI 180

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKT 246
           RGEV + + DF ALN E +      +AN RNA  G LR+L+      R L F+  GLG  
Sbjct: 181 RGEVVLQREDFKALNAERLKQNLPLFANARNATVGSLRQLDSKIAAQRKLTFYPWGLGLV 240

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            E +   +  M   ++  GF     V    +   I   +    + RS + +D DG+V  +
Sbjct: 241 EEKYTSLKQSMQM-VKDWGFLSLEFV-LCESLEAIEETFKLFHTRRSEVTFDADGMVVML 298

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           D+  LQ  LG   +SPR+  ++KF   +  T+LLD+  Q+GR+G +TPVA LEP+ + GA
Sbjct: 299 DDLYLQSILGFTIKSPRFGFAYKFPATEKHTKLLDVLNQVGRSGAITPVALLEPIKLEGA 358

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I+ ATL N   I+            + + + D V++ R+G+VIPK++  + + R+   +
Sbjct: 359 CISKATLDNYTQIQ-----------QQGLMINDTVVIVRSGDVIPKIIKPLKHLRNGTQK 407

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P + P+ CP CQS + +       +               +     K +           
Sbjct: 408 PITPPTHCPACQSVLQKQPLNVCPECNLPLLLKNKPNFCPKCQILFKKYTHCPVCQTLLG 467

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            + +     +S D  F          L+ ++      ++       +   N       + 
Sbjct: 468 KQHKKCPQCQS-DVTFPKHCLQCGGDLELKEYCYRCDLDLSNKDRYLFCPNKDCMARVKE 526

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYY------------------------LSYQNFAQ 582
           +I        L I+ +G ++   L +                             QN  Q
Sbjct: 527 SIVYFASKHGLEIKGLGDKVVAQLLQAGLIKGVIDLYSLEEKALLELEGWQQKKAQNLLQ 586

Query: 583 EINNIIAHN------------------------------NDDWLSLIRVPLVGD------ 606
            I                                     +  +  +  +   G       
Sbjct: 587 AITKSKQAPLWRFISALGIEHIGKGASKILAQHFGLEVFDKTYQEIASLEGFGAKGLKEE 646

Query: 607 --IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
              IA + V F     N   ++ LL  V+P     +
Sbjct: 647 EKKIAASFVRF--VKENKGLIKQLLTLVNPIATEKK 680


>gi|219127319|ref|XP_002183885.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404608|gb|EEC44554.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 864

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 203/781 (25%), Positives = 325/781 (41%), Gaps = 115/781 (14%)

Query: 17  ARKELSSLEQEISYHDDCYY--------QYSKPIILDSEYDALKR-----RCDAIAHAFP 63
             +EL  L  ++  HD  YY            P   +   D+  R     +      A  
Sbjct: 102 IYEELVRLASDLRRHDALYYESEMARNSVGRIPPCSN---DSNVRVAWAYKPRGTEDASE 158

Query: 64  DLA---RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
                 R   PN     +   +     K  H  P LSL+ +   E+L  ++ RI +    
Sbjct: 159 TFFCRPRRPTPNDATRIVVDRV-----KRPHVRPMLSLDNVHREEELLAWLERIRKKLTV 213

Query: 121 KDDN-SIFFTLEPKIDGTMITIRYEKGK-------FVYAALRGDGHSGEDVSACIRAIPT 172
            D   S+    EPK+DG  ++ RYE+ +       FV+A+ RGDG  G+DV+  ++    
Sbjct: 214 DDGPSSLTILTEPKLDGLSLSCRYEQRQSNTTLYTFVWASTRGDGKQGQDVTHAVQQGNL 273

Query: 173 IP----------RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
           +P             S   P+++E+RGE+ +    F +L  E        +AN RNAASG
Sbjct: 274 VPLTLDWASLVADPESYTHPKVLEIRGEIVLPTTVFQSLEGE-----GLAFANARNAASG 328

Query: 223 ILRRLNPTDIT-------RYLNFFVHGLGK------------------TSEIFAKGQYEM 257
           IL R                L F+ + +                       +        
Sbjct: 329 ILLRKESITDPVASQALREKLCFYAYDVAGDDGFTVSGVQLRRVLPTLGFRVPEPVAVTR 388

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           L+      + VN+        H +  +    K+ ++   YD+DG V+KV E  L+  LG+
Sbjct: 389 LRLNNTTAWNVNDIQALLKYHHSMQHHRQGKKTSQTYGDYDMDGAVHKVSESDLRIILGQ 448

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             R+PRW I+HKFA   A T LLDI +Q+GRTG LTPVA L+PV + G ++  ATLHN  
Sbjct: 449 SNRAPRWAIAHKFAPLAAVTTLLDITVQVGRTGALTPVAILQPVELAGVVVRRATLHNFA 508

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS-----FPS 432
           +++ +  S   +           VLV+RAG+VIP+VV  I          F      FP 
Sbjct: 509 HMQQVLGSTTTIAKE------SSVLVRRAGDVIPQVVQRIAGTDAGSNNGFDTISVAFPE 562

Query: 433 FCPICQSRVVRDLNPKT---GKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
            CP C S VV D   KT          RC      C+ + +  + H VSRDA ++ GL +
Sbjct: 563 TCPACGSPVVTDEVNKTASKETAGQVLRCGGPQWNCTPRAVGSIAHAVSRDALDVTGLSE 622

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI-LGFGDVSVTNLYDSINKRRN 547
            ++    +    A  I  P+DIF L +         E    G           +   +  
Sbjct: 623 ARIMQLIE----AGFISRPSDIFALAKSPTQLEKLAEMDGWGPKSAQNLAAVANRIAKNG 678

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP----- 602
           ISL RF++SLGIR  G   +  +A  Y S ++F +++                       
Sbjct: 679 ISLSRFVYSLGIRFSGVHSSALIAAAYGSVEDFLKDVEAASTLPIKQVQDQESNDEQVQS 738

Query: 603 ------------LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-----S 645
                        +G ++  ++  F Q+   + A E+L   +          VS      
Sbjct: 739 FARLREETDITKGIGPVLLNSLDTFAQDQELVEAAESLASSILVLADDSAMVVSTLATTG 798

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS-AILSRKTDIIIVGDNPGSKLEKAQQL 704
            +++  +VFTG++ ++ R +A+++   +GA  +   +S+ T +++ G+  G KLE+A++L
Sbjct: 799 PLQDMAVVFTGSISEMSRSEAKKWAKVMGAKSTPGSISKLTGLVVAGEKGGKKLEQAEKL 858

Query: 705 G 705
           G
Sbjct: 859 G 859


>gi|57168176|ref|ZP_00367315.1| DNA ligase (NAD) Cj0586 [Campylobacter coli RM2228]
 gi|57020550|gb|EAL57219.1| DNA ligase (NAD) Cj0586 [Campylobacter coli RM2228]
          Length = 467

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 153/482 (31%), Positives = 247/482 (51%), Gaps = 36/482 (7%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +KE        +     YY+  +P+  D EYDAL R                  + P  K
Sbjct: 3   KKEYLEKVALAASWMRAYYEKDEPLASDEEYDALIRELRVFEEQN---KDEISKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAR--------CEENFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + Y+KG+ V  A RGDG  GED++  +  I  IP   ++N  E IE+RGEV I K+D
Sbjct: 112 SLNLLYDKGRLVSGATRGDGEIGEDITLNVLEIDNIP--KTINYKEKIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G  + +      E
Sbjct: 170 FEKINEKRARLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSE 228

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++Q +R LGF  ++ ++       ++  YNE+ S+R   P  +DG+V +VD+ +L K+LG
Sbjct: 229 VMQFIRELGFLKDDFIKLCANLDEVLKAYNELLSLRDKKPMMMDGMVVRVDDLALCKELG 288

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
              + P++M + KF   + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN 
Sbjct: 289 HTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVIVKSATLHNF 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D I  L            + + D V V R+G+VIPK+  +    R+        P+ CP 
Sbjct: 349 DEIARL-----------GVCINDEVSVIRSGDVIPKITKVF-KIRNNLRTKIIKPTVCPE 396

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S ++ +          A      L C A+ +  + HFVS+   NI+GLG+  ++  FK
Sbjct: 397 CLSELLDEG---------AFLKCQNLDCKARLVNSIIHFVSKKCLNIDGLGENIVELLFK 447

Query: 497 SE 498
            +
Sbjct: 448 EK 449


>gi|330800435|ref|XP_003288242.1| hypothetical protein DICPUDRAFT_152457 [Dictyostelium purpureum]
 gi|325081750|gb|EGC35255.1| hypothetical protein DICPUDRAFT_152457 [Dictyostelium purpureum]
          Length = 835

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 177/809 (21%), Positives = 313/809 (38%), Gaps = 154/809 (19%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA-FPDLARSEDPNGPLNK 77
            E++ L  +I  ++D YY  S   I D EYD L ++ +++      D   +++ +   NK
Sbjct: 50  DEINELRNKIKRYNDLYYNKSISEISDYEYDKLFKKLESLEKQINNDEDGNDNASLITNK 109

Query: 78  IGGEMNLSL--FKVTHSIPTLSLEKIWNIEDLRKFITRIY-------------------R 116
           +G  +  +    K  H+   LSL+  +++ED++ F  +I                     
Sbjct: 110 VGAPVRSNGNNNKYRHTTRMLSLQNTYSLEDIQSFKNKIEKFLLKKLKLENNTTSNSDLN 169

Query: 117 FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI--- 173
                  N++ +++E K DG  I++ Y   K V    RGDG  GED+++           
Sbjct: 170 TLSSFGINNLEYSMELKYDGIGISLVYSDSKLVRILTRGDGEIGEDITSNALQFIPQLNK 229

Query: 174 ----PRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR-KPYANPRNAASGILRRLN 228
                     +  +  E+RGEV ++K     +N           Y N RN  SGILR+  
Sbjct: 230 LINLKLPNQYSNYKEFEIRGEVVLNKTYLETINKIKSDNNDTHQYKNTRNIVSGILRKNL 289

Query: 229 PTDITRY--------------------------------LNFFVHGLGKTSEIFAKG--- 253
                                                   +FF +    +++        
Sbjct: 290 IEIDDEQHNENNVDDDNSSNSSSNVKKNDIEQLLHNNIKFDFFAYNFIPSNKNQTINGDT 349

Query: 254 QYEMLQKMRCLGFPVNN----------GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
           Q   L  ++ +GF V+             +Q +    I  Y  +    R    +DIDG+V
Sbjct: 350 QSSRLGLLKSIGFQVDPGADVISLPTLNNKQPHDIGPIQQYIEKWNENRFKFQWDIDGIV 409

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K++    Q +LG+  RSPRW  ++KF  K   + +LDI +Q+GRTG +TPVA ++PV I
Sbjct: 410 IKINSIDTQTKLGDINRSPRWAFAYKFNAKSEVSTILDIVLQVGRTGKVTPVALVDPVVI 469

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G  I+ ATL+N +YI+ L            +  G +VL++RAG+VIPK++  I      
Sbjct: 470 HGVTISRATLNNLNYIQKLQ-----------LNKGSKVLIERAGDVIPKIISKINVPEQQ 518

Query: 424 DAQPFSFPSF--------CPICQSRVVRDLNPKTG--KLVAAHRCTGGLACSAQQLERLK 473
             +    P          C    + V    N      K            C  QQ + + 
Sbjct: 519 PQEQQLQPEDGYLKNIFKCNSNGNLVCPCANESELIQKPGYIDYFCVDSNCPDQQFQEIS 578

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533
            FV + A NI+G+G  Q+   F+       I    D++ L++ +     ++  + G+  V
Sbjct: 579 WFVDKKAMNIKGIGISQIKDLFEHN----FIEDAGDLYLLKKYKS----QLLELKGYNHV 630

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
            V N+ ++I + ++  L   +  +GI  +G   ++ LA+ +    N              
Sbjct: 631 KVNNMLEAIEESKSRGLSSLLCGMGIPGIGRANSKILAQKFQHLDNLINA---------P 681

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQ--NPRNICAVEALL---------------------- 629
              S+     +G   ++AI  ++   +P     +  L+                      
Sbjct: 682 SIQSIENQSKLGRQTSEAIYNYFNPIDPTEKEYINFLIYKFKENNLNLSYTNNNNDNDND 741

Query: 630 ---------------KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ-L 673
                             + +I     N+ + I  K +V TG L    R   ++ +    
Sbjct: 742 NDNDNDNDNDNDNDNNNNNNNIESKNINIDNPIYKKNIVITGKLSIGDRDSVKDILESKY 801

Query: 674 GAVVSAILSRKTDIIIVGDNPGS-KLEKA 701
              V + ++  TDI+++G  P + K+ KA
Sbjct: 802 NCKVQSTINSLTDILLIGGKPANAKISKA 830


>gi|290242978|ref|YP_003494648.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. K90mix]
 gi|288945483|gb|ADC73181.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. K90mix]
          Length = 652

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 151/710 (21%), Positives = 255/710 (35%), Gaps = 107/710 (15%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALK-RRCDAIAHAFPDLARSEDPNGPLNKIG 79
           +  L       +  Y +  +P++ D+ YD L            P L   E          
Sbjct: 30  VDELATACERLNASY-RAGQPLVPDAVYDHLFIATLSEKDPEHPFLKAVEPE-------- 80

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD--DNSIFFTLEPKIDGT 137
           GE       V H  P LS +K +  ++LR+F+ R+    +       ++ F + PK+DG 
Sbjct: 81  GEAFEG-DTVKHDTPMLSTDKAYTEDELRRFLGRVEVAAEALGIRSETLTFRMTPKLDGI 139

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
               R   G+ V    RG+G +G D+S         P       P       E+ + +  
Sbjct: 140 AGMQR-PDGRLV---TRGNGFAGADISHAFERGLRTPDGSMEPGPG------ELVLEEMF 189

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
           F                +PRN  +G +         +        +          Q   
Sbjct: 190 FQDEIRVAF-----GMPHPRNFVAGFVGADTVKPHHQKAADAQAIIFFPYRQLPAWQASA 244

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
              M                          M+++R  +PY  DG+V +V + +++  +G 
Sbjct: 245 AVVMASW--------------------QERMEALRQAVPYRTDGVVLEVTDETVKAHMGS 284

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +   RW ++ K   + A  R+ DI IQ GRTG +TPV   +PV + GA I+N T H   
Sbjct: 285 TSHHHRWRVALKTKGEVAHVRVRDIRIQTGRTGRITPVLEFDPVLLTGARISNVTAHTAA 344

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            +             + + VG  + + RAG+VIPK+  ++     P        + CP C
Sbjct: 345 NL-----------AQQGLGVGAEIEISRAGDVIPKLERVLEPASEP-----MTVTHCPSC 388

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
                       G+      C   + C AQ   RL+HF                D F   
Sbjct: 389 GHEA-----EVEGEYAV---CPNTVGCLAQAEARLRHFFHVMGNA---------DLFGPK 431

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                      D+  L      +   +    G     V  L   + +   +   RF+ +L
Sbjct: 432 TVEVLVENGHTDLRGLFDLNAVAFVSMGFGPGQASNLVRELARCLREA--VPDWRFLAAL 489

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           G+RH+G   +R L   Y            + +  N     +  V   G I + +I E  Q
Sbjct: 490 GLRHLGRGDSRKLLAVYP-----------LESITNLTAEDIAAVEGFGPITSASIAEQLQ 538

Query: 618 NPRNICAVEALLKEVSP----SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
             R    +EA+++         +          +  + +VFTGTL    R + +E    L
Sbjct: 539 EQRER--IEAMIRLGFNLERTPLAGEGAAAEGPLAGQSIVFTGTLTLGSRGELEEQARGL 596

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-------VKIMNEEQFLF 716
           GA + + ++ KT I++ G+  GSK +KA+ +        V+I++E  +  
Sbjct: 597 GATIQSGVNSKTTILVCGEKAGSKRKKAEAINEKAGKEQVRILDEAAWAA 646


>gi|254479199|ref|ZP_05092546.1| NAD-dependent DNA ligase adenylation domain subfamily
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034862|gb|EEB75589.1| NAD-dependent DNA ligase adenylation domain subfamily
           [Carboxydibrachium pacificum DSM 12653]
          Length = 271

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/267 (32%), Positives = 138/267 (51%), Gaps = 11/267 (4%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E +  E+ARK +  L ++I+YH+  YY   +P I D EYD L R    +   +P+     
Sbjct: 13  EFMDREEARKRIEELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEFK--- 69

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
            P+ P  ++GGE        TH +P LSL   +  E+++ F  R+           + + 
Sbjct: 70  TPDSPSQRVGGEPLDEFEPFTHIVPMLSLANAFTAEEIKDFDRRVKEAVG-----EVEYV 124

Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189
           +EPKIDG  + + YE G F   + RGDG  GE+V+  ++ I +IP  L  ++   + VRG
Sbjct: 125 VEPKIDGLSVELVYENGIFTVGSTRGDGIVGENVTPNLKTIKSIPLRLKDSVN--LVVRG 182

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           EV++ K  F  LN+E    G   +ANPRNAA+G +R+L+P     R L+ F+  L +   
Sbjct: 183 EVFMPKASFAKLNEERAERGESLFANPRNAAAGSVRQLDPKVTAKRDLDIFIFNLQRIEG 242

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQA 275
              K   E L+ ++  GF V   +++ 
Sbjct: 243 RDFKTHVEALEFLKEQGFKVIPFIKKC 269


>gi|218667573|ref|YP_002425666.1| DNA ligase, NAD-dependent, putative [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|218519786|gb|ACK80372.1| DNA ligase, NAD-dependent, putative [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 609

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 155/697 (22%), Positives = 247/697 (35%), Gaps = 100/697 (14%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L  ++   +  Y +   PI+ D+EYDAL  R        P L            +  E  
Sbjct: 3   LVHKLEEANAAY-RAGAPIMSDAEYDALVERLRREQPDHPYL----------QTVEPEPE 51

Query: 84  LSL--FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
                 KV H  P LS EK +   DL ++ + + R   +   + + + +  K+DG   + 
Sbjct: 52  NIFGGAKVRHHAPMLSTEKAYTESDLIRYFSAVTRQAARLGMDEVIYAMTAKLDGLAGSR 111

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201
               G  V  A RG+G  GED+         I       +   ++  GE+ + K+ F   
Sbjct: 112 DRAHG--VDLATRGNGLQGEDIGKAFARGLKI-------VGADVDGPGEIVMPKDFFEEH 162

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
              +       + +PRN   G +      D                         + +  
Sbjct: 163 LVPL------GFKHPRNFMVGFVGADTEKD---------------------HHRLVKESG 195

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEM-KSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
                P  N  R       I+     + + IR   PYD DG+V +V+E  L+  LG    
Sbjct: 196 MAHFVPYANLPRFYADKDTILRDIAYISEDIRKNTPYDTDGIVIEVEEPELRAALGSTNH 255

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
             RW I++K   + A T +  +  Q GRTG +TPV  ++PV + GA I  AT HN    +
Sbjct: 256 HHRWQIAYKTKGETAETTVTGVVWQTGRTGRITPVIEIDPVELSGATIRRATAHNFQKAR 315

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
                         + VG RV + R+GEVIP ++D++             P+ CP C   
Sbjct: 316 K-----------DGLGVGSRVTMIRSGEVIPFIMDVLSPAPLD------VPTACPCCNGP 358

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           V         +    +       C AQ    + HF       I G          +    
Sbjct: 359 V---------EEDGEYLTCVNPHCEAQAEGAISHFFK-----IMGTADGFGPKAVEKIVA 404

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
           A  I     +  + R             G G                +   RF+ + GIR
Sbjct: 405 AG-ITDILAVLDMTRADFEGMGF-----GPGQAENLEREMKRCMSTPVEDWRFLAAFGIR 458

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           ++G   ++               I  + A N      ++ +    +  A  I        
Sbjct: 459 YLGRGDSK----------ALLCAIGGLDALNGITPAQIMAIDGFAEKTALCIAHDLTWRW 508

Query: 621 -NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
             I AV   ++    S        +  +    LVFTGT  K  R   +     LGA V +
Sbjct: 509 MEIEAVRDRMEAPLVSSAPAGDIGTLPLAGMSLVFTGTFSK-DREVMETQAEALGAKVQS 567

Query: 680 ILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715
            ++ KT ++++G+ PG SK  KA  LG  +  E ++L
Sbjct: 568 GVNGKTSVLVIGEKPGASKTTKAAALGTPVWTEAEYL 604


>gi|332992966|gb|AEF03021.1| DNA ligase [Alteromonas sp. SN2]
          Length = 326

 Score =  267 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 115/363 (31%), Positives = 187/363 (51%), Gaps = 38/363 (10%)

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           + +GG  ++NATLHN+D I  L            ++VGD V+++RAG+VIP+VV ++  +
Sbjct: 1   MFVGGVTVSNATLHNQDEIDRL-----------GVKVGDYVIIRRAGDVIPQVVSVVQAK 49

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  + +   FP+ CP+C S V +  +       A  RCTGGL C+AQ+ + LKHF SR A
Sbjct: 50  RDDNVKDIVFPTDCPVCGSNVEKLEDE------AVARCTGGLICAAQRKQALKHFASRKA 103

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
           F+I+GLG + +D        A  +  PAD F L+            +    + S   L  
Sbjct: 104 FDIDGLGDKLVDQLVD----ADLVHSPADFFNLKLGDVVG------LERMAEKSAAKLLL 153

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           S+   +  +L +F+++LGIR VG   A +LA ++ + +                   LI 
Sbjct: 154 SLEASKATTLAKFLYALGIREVGEATAANLALHFETLEAIRNASE----------DELIE 203

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQ 659
           V  VG I+A  +  F+  P N   ++ALL+         +K  S+  ++ K  V TGTL 
Sbjct: 204 VQDVGGIVAAHLHNFFNEPHNTDVIDALLEAGINWPAIEKKPQSALPLDGKTCVVTGTLS 263

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ R   +  +  LGA V+  +S+ T  ++ G+  GSKL KAQ+L V++ +E + L  L 
Sbjct: 264 EMGRSDVKAKLQLLGAKVAGSVSKNTSFLVAGEKAGSKLTKAQELDVEVWDEAKLLAFLA 323

Query: 720 QYN 722
           +++
Sbjct: 324 EHD 326


>gi|291060005|gb|ADD72740.1| DNA ligase, NAD-dependent [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 840

 Score =  267 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 149/731 (20%), Positives = 276/731 (37%), Gaps = 103/731 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +  A++ +  LE+ I +H D YY  ++  I D  +DAL      +    P L        
Sbjct: 18  MSTAQRRVQELEKLILHHQDRYYN-AESDISDDAFDALWEELARLDPGNPLLKA------ 70

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
               IG +      K  H +P  S  K  + E    +  +         +    F ++ K
Sbjct: 71  ----IGSDSQRDAVKKRHIVPMGSQHKAADEESFSAWAKK---------NALQAFLVQHK 117

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI------PRVLSLNIPEIIEV 187
           +DG  + ++YE+G F  A  RG+G  G+DV+A +R +               N+P    V
Sbjct: 118 LDGVSLELQYERGHFCCALTRGNGIVGDDVTANVRGMRGFVPTLTAEWGPCGNLPFTGGV 177

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247
           RGEV + K+   +            +AN RN  +GIL+R +    T         +  T 
Sbjct: 178 RGEVIMHKDIHRSHY--------PTHANCRNTVNGILKRKDGRGRTHLHIVCYDAVPGTP 229

Query: 248 EIFAKGQYEMLQKMRCLGFPVNN-----GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
                G      +   L +            +      +V+  +E+   R  LPY IDGL
Sbjct: 230 GKPFTGSLPFADETEKLAWLARQGFVTVHSHRCANAQEVVALRSEIMRTRELLPYSIDGL 289

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V K  +   Q     +   P+  I+ KF+ ++A T L D+  Q       TP+   +PV 
Sbjct: 290 VVKSTDLDFQD---AQLPRPKKQIAFKFSTQEAITTLRDVQWQTSGVT-YTPIGITDPVR 345

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +  A L N + +  L            +++G  VL+ + GE+IPK+  ++     
Sbjct: 346 LAGTTVKRANLCNPNMLTKLC-----------LKIGSHVLISKRGEIIPKIEALVST--P 392

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             AQ    P+ C  C + +            +   C              +     +   
Sbjct: 393 AHAQEIHIPTQCTSCNTVL--------ENSGSRLFCPNVNCPLLSHHRITRWI---ECLE 441

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+ +G + +   F+ +     +R   D++TL             I   G+ +   + ++I
Sbjct: 442 IKHVGTELIQRLFEEKK----VRRIPDLYTLTCEDLI------EIEHVGNATAKKILEAI 491

Query: 543 NKRRNISLERFIFSLGIRHVGAEIA-RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           + ++ I+L+ FI   GI  +G  +  + +   + + +                  +L  +
Sbjct: 492 HHKKEIALQTFIAGFGIEGIGETMGEKLICAGFDTLEKVLHATT----------ETLESI 541

Query: 602 PLVGDIIAQAIVEFYQ--NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
              G  +A+++V             ++             ++   S +  K   F+G+L+
Sbjct: 542 YQFGTELAKSVVTGIARVKDDMCELLDR-----GFVRILAKQQAESPLRGKSFCFSGSLR 596

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL----GV--KIMNEEQ 713
              R      +  LG VV   ++R    +I  ++       AQ+L    GV  +I++E++
Sbjct: 597 NGDRATI-HRIRALGGVVRTSVTRDLSYLIF-ESLSQPYRTAQKLKKEQGVALEIISEDE 654

Query: 714 FLFLLQQYNTT 724
           F  LL Q + +
Sbjct: 655 FCRLLDQASAS 665



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQ 703
            +      F+G L  + R +A   V +LG  V   +S +   ++  D      K + A +
Sbjct: 762 PLHGMSFCFSGDLDGMTRAQAIALVQRLGGTVKTAVSTQLTYLVSNDPHGQSRKCQNAVR 821

Query: 704 LGVKIMNEEQFLFL 717
            GV+I++E  FL L
Sbjct: 822 CGVRIISEHVFLAL 835


>gi|15639622|ref|NP_219072.1| DNA ligase (lig) [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189025860|ref|YP_001933632.1| DNA ligase [Treponema pallidum subsp. pallidum SS14]
 gi|6014987|sp|O83642|DNLJ_TREPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781445|sp|B2S3M4|DNLJ_TREPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|3322933|gb|AAC65609.1| DNA ligase (lig) [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018435|gb|ACD71053.1| DNA ligase [Treponema pallidum subsp. pallidum SS14]
          Length = 823

 Score =  267 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 149/731 (20%), Positives = 276/731 (37%), Gaps = 103/731 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +  A++ +  LE+ I +H D YY  ++  I D  +DAL      +    P L        
Sbjct: 1   MSTAQRRVQELEKLILHHQDRYYN-AESDISDDAFDALWEELARLDPGNPLLKA------ 53

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
               IG +      K  H +P  S  K  + E    +  +         +    F ++ K
Sbjct: 54  ----IGSDSQRDAVKKRHIVPMGSQHKAADEESFSAWAKK---------NALQAFLVQHK 100

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI------PRVLSLNIPEIIEV 187
           +DG  + ++YE+G F  A  RG+G  G+DV+A +R +               N+P    V
Sbjct: 101 LDGVSLELQYERGHFCCALTRGNGIVGDDVTANVRGMRGFVPTLTAEWGPCGNLPFTGGV 160

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247
           RGEV + K+   +            +AN RN  +GIL+R +    T         +  T 
Sbjct: 161 RGEVIMHKDIHRSHY--------PTHANCRNTVNGILKRKDGRGRTHLHIVCYDAVPGTP 212

Query: 248 EIFAKGQYEMLQKMRCLGFPVNN-----GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
                G      +   L +            +      +V+  +E+   R  LPY IDGL
Sbjct: 213 GKPFTGSLPFADETEKLAWLARQGFVTVHSHRCANAQEVVALRSEIMRTRELLPYSIDGL 272

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V K  +   Q     +   P+  I+ KF+ ++A T L D+  Q       TP+   +PV 
Sbjct: 273 VVKSTDLDFQD---AQLPRPKKQIAFKFSTQEAITTLRDVQWQTSGVT-YTPIGITDPVR 328

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + G  +  A L N + +  L            +++G  VL+ + GE+IPK+  ++     
Sbjct: 329 LAGTTVKRANLCNPNMLTKLC-----------LKIGSHVLISKRGEIIPKIEALVST--P 375

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
             AQ    P+ C  C + +            +   C              +     +   
Sbjct: 376 AHAQEIHIPTQCTSCNTVL--------ENSGSRLFCPNVNCPLLSHHRITRWI---ECLE 424

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           I+ +G + +   F+ +     +R   D++TL             I   G+ +   + ++I
Sbjct: 425 IKHVGTELIQRLFEEKK----VRRIPDLYTLTCEDLI------EIEHVGNATAKKILEAI 474

Query: 543 NKRRNISLERFIFSLGIRHVGAEIA-RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           + ++ I+L+ FI   GI  +G  +  + +   + + +                  +L  +
Sbjct: 475 HHKKEIALQTFIAGFGIEGIGETMGEKLICAGFDTLEKVLHATT----------ETLESI 524

Query: 602 PLVGDIIAQAIVEFYQ--NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
              G  +A+++V             ++             ++   S +  K   F+G+L+
Sbjct: 525 YQFGTELAKSVVTGIARVKDDMCELLDR-----GFVRILAKQQAESPLRGKSFCFSGSLR 579

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL----GV--KIMNEEQ 713
              R      +  LG VV   ++R    +I  ++       AQ+L    GV  +I++E++
Sbjct: 580 NGDRATI-HRIRALGGVVRTSVTRDLSYLIF-ESLSQPYRTAQKLKKEQGVALEIISEDE 637

Query: 714 FLFLLQQYNTT 724
           F  LL Q + +
Sbjct: 638 FCRLLDQASAS 648



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQ 703
            +      F+G L  + R +A   V +LG  V   +S +   ++  D      K + A +
Sbjct: 745 PLHGMSFCFSGDLDGMTRAQAIALVQRLGGTVKTAVSTQLTYLVSNDPHGQSRKCQNAVR 804

Query: 704 LGVKIMNEEQFLFL 717
            GV+I++E  FL L
Sbjct: 805 CGVRIISEHVFLAL 818


>gi|71042246|pdb|1ZAU|A Chain A, Adenylation Domain Of Nad+ Dependent Dna Ligase From
           M.Tuberculosis
          Length = 328

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 106/332 (31%), Positives = 168/332 (50%), Gaps = 13/332 (3%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    +  +  ++  +L +E+  H   YY    PII D+E+D L RR +A+    P+L  
Sbjct: 4   PDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL-- 61

Query: 68  SEDPNGPLNKIGGE-MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
              P+ P   +GG         V H    LSL+  +  ++L  +  RI+           
Sbjct: 62  -RTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH--- 117

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIP 182
            +  E KIDG  +++ Y +G+   A+ RGDG +GEDV+   R I  +P  L       +P
Sbjct: 118 -YLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVP 176

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
           E++EVRGEV+   +DF ALN  ++  G+ P+ANPRN+A+G LR+ +P     R L    H
Sbjct: 177 EVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICH 236

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           GLG          ++    +R  G PV+     A    G+    +     R  + ++IDG
Sbjct: 237 GLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDG 296

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
           +V KVDE +LQ++LG  +R+PRW I++K+  +
Sbjct: 297 VVVKVDEVALQRRLGSTSRAPRWAIAYKYPPE 328


>gi|153813748|ref|ZP_01966416.1| hypothetical protein RUMOBE_04182 [Ruminococcus obeum ATCC 29174]
 gi|149830168|gb|EDM85261.1| hypothetical protein RUMOBE_04182 [Ruminococcus obeum ATCC 29174]
          Length = 538

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 146/585 (24%), Positives = 252/585 (43%), Gaps = 59/585 (10%)

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P   +G E    L K TH  P LSL+K  + + LR FI             +    L 
Sbjct: 11  DSPTVNVGYEAVDVLPKETHESPMLSLDKTKDRDVLRAFI------------GTHPTLLS 58

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            K+DG  I + YE G+ + A  RG+G  GE ++   +    IP  L +     + +RGE 
Sbjct: 59  WKMDGLTIVLTYENGELLKAVTRGNGTVGEVITNNAKVFKNIP--LKIAYRGRLVLRGEA 116

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRR-LNPTDITRYLNFFVHGLGKTSEIF 250
            I+ +DF  +ND +  V    Y NPRN  SG +R+  N     R + F+   L    ++ 
Sbjct: 117 IITYSDFEKINDTIEDVD-AKYKNPRNLCSGSVRQLNNQITAERNVRFYAFALVSAQDVD 175

Query: 251 AKGQYEMLQ-KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309
                +     +R  GF V                 +          +  DGLV   D+ 
Sbjct: 176 MHNSRKYQMEWLRRQGFEVVEYRMVTGENLD--EAMDYFAHAIEKNDFPSDGLVALYDDI 233

Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           +  + LG  A+ PR   + K+A++   T L +I+    RTG++ PVA  +PV + G  ++
Sbjct: 234 AYGESLGSTAKFPRNAFAFKWADEVRETTLREIEWSPSRTGLINPVAVFDPVELEGTTVS 293

Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429
            A++HN   +K L            + +GD + V +A  +IP++ + +       +    
Sbjct: 294 RASVHNVSIVKDLQ-----------LGIGDTIQVYKANMIIPQIAENLTR-----SSNLE 337

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            P  CP C             +            C+A++++    FVSRDA NI+GL + 
Sbjct: 338 IPEICPACGQEARVIR-----ENDVEALYCMNPDCAAKKIKAFTLFVSRDAMNIDGLSEA 392

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            L+ F         I    DIF +++ +     +I  + GFG+ S  NL +SI K    +
Sbjct: 393 TLEKFIAK----GFIHNFGDIFEIEKFRD----EIVTMEGFGEKSYENLMNSIEKAEETT 444

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
           L + I+SLGI ++G   A+ + +++          +++    + D   +  +  +G +IA
Sbjct: 445 LAKVIYSLGIANIGLSNAKVICRHFD---------DDLDKIRSADEEEISAIDGIGPVIA 495

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654
           +++ +++ NP N   V+ LLK +  +  + E +          V 
Sbjct: 496 KSLTKYFSNPENNQKVDHLLKYLHIN--KEEISGEQIFAGMNFVI 538


>gi|126174865|ref|YP_001051014.1| DNA ligase (NAD(+)) [Shewanella baltica OS155]
 gi|166216240|sp|A3D5Y2|DNLJ_SHEB5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|125998070|gb|ABN62145.1| DNA ligase (NAD(+)) [Shewanella baltica OS155]
          Length = 648

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 153/723 (21%), Positives = 289/723 (39%), Gaps = 106/723 (14%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
           K+  I I   SI++  +    L   +   +  Y +   P+I D  YD+   +        
Sbjct: 24  KKLEIAISKESIDELSE--DELLALLKVTNALY-RSGFPVIEDILYDSFWNKFALNHPNH 80

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P +   E           E+      V      LS +K ++ E+++K++ RI +  ++ D
Sbjct: 81  PFITSVET----------EVLNLGKTVALPQKMLSTDKAYSKEEIKKWLDRILKAAEELD 130

Query: 123 --DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
              N I   + PK+DG      ++ G+      RGDG  G+DVS        +       
Sbjct: 131 IDTNEIEIRITPKLDGYAA---FDDGE--RLYTRGDGVKGQDVSRAFERGLKVV-----R 180

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240
             E     GE+ I+K  F     +        + N RN  + I+   N  +         
Sbjct: 181 NSERGLGAGEIVINKAYFEKKLSQ-------YFENSRNIQAAIIAEKNVDERVLEAIKEG 233

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
             +     +           M                      +   ++ + +++ YD+D
Sbjct: 234 ACVFHPFAVLPNWTGNYQDLM--------------------TDFDGIIEQVWNSVEYDVD 273

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G++ +  +  +++ +G   +  RW I+ K  ++ A   ++ +  Q  RTG +TPVA L P
Sbjct: 274 GVILEATDTRIKEHMGANRKFHRWQIAFKINDEVAEVEVISVTPQTSRTGRVTPVAELVP 333

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
             I GA+I+  T+H+ + +K              +  G  V + R+G VIPK+  +I   
Sbjct: 334 TRISGAMISRVTVHHYNMVK-----------INGVGPGAIVQIVRSGLVIPKIEKVIKPV 382

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
                     P  CP C+S ++ + +           C     C AQ    L HF    A
Sbjct: 383 DP------QMPELCPSCKSHLLWESD--------HLVCPNKSDCPAQTENTLVHFFKTLA 428

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            N +G G + ++           ++    ++ L+  Q         + GFG+ +  NLYD
Sbjct: 429 NN-DGFGPKNIEKLANLG-----VKHIHQMYDLKPHQF-------AMYGFGEKTSKNLYD 475

Query: 541 SINKRRNISL--ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
            +   +NI +   RF+ + G+  +G      L ++Y S +   +               +
Sbjct: 476 QLQASKNIEIEDWRFLSAFGVSRLGGGNCEKLLQHY-SLRELFEAT----------VEDI 524

Query: 599 IRVPLVGDIIAQAIVEFYQN-PRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTG 656
             +     + A+AIV+   N       V  L   +S +  + E ++++S +  K +VFTG
Sbjct: 525 AELNGFARVSAEAIVKGLANIKEEFFKVYDLGFNLSITPKQSELESLASPLTGKIVVFTG 584

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715
            + + +R   +++   LGA V   ++  T  +I G   G +K+  A++ GVK+++E+++L
Sbjct: 585 KMLQGKRSDMEKHAKALGAKVGTSVTSNTTYLIAGLKVGETKINDAKEKGVKVLSEQEYL 644

Query: 716 FLL 718
            L+
Sbjct: 645 DLI 647


>gi|332755050|gb|EGJ85415.1| DNA ligase domain protein [Shigella flexneri 4343-70]
          Length = 256

 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 81/257 (31%), Positives = 131/257 (50%), Gaps = 8/257 (3%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K++  + +  E K
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KNNEKVTWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L     P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFP 267
                  L + +  G  
Sbjct: 236 PDTHLGRLLQFKKWGCR 252


>gi|218678588|ref|ZP_03526485.1| NAD-dependent DNA ligase LigA [Rhizobium etli CIAT 894]
          Length = 264

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 114/265 (43%), Positives = 169/265 (63%), Gaps = 4/265 (1%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
             +   ++ L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   F
Sbjct: 2   STEGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEVRF 61

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P+L R    + P  ++G   +++   V H+ P LSL+  ++ ED++ F+  IYRF  +  
Sbjct: 62  PELIRE---DSPSRRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVASIYRFLGRLP 118

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
           D SI FT EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P
Sbjct: 119 DQSIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVP 178

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241
            ++E+RGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+     +R L FF +
Sbjct: 179 AVVEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAY 238

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGF 266
             G+ S++ A  Q+     ++ LGF
Sbjct: 239 AWGEMSDMPADTQFRHGADLQGLGF 263


>gi|323228068|gb|EGA12205.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
          Length = 276

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 145/280 (51%), Gaps = 8/280 (2%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H IP LSL+ +++ E    F  R+      K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEIPMLSLDNVFDEESFLAFNKRVQDRL--KSTENVIWCCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVY 192
           +DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRGEV+
Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250
           + +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G       
Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290
                  L + +  G PV++ V   ++   ++ +Y+ ++ 
Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEK 275


>gi|227875717|ref|ZP_03993845.1| DNA ligase (NAD(+)) [Mobiluncus mulieris ATCC 35243]
 gi|269976734|ref|ZP_06183710.1| DNA ligase, NAD-dependent [Mobiluncus mulieris 28-1]
 gi|227843659|gb|EEJ53840.1| DNA ligase (NAD(+)) [Mobiluncus mulieris ATCC 35243]
 gi|269935099|gb|EEZ91657.1| DNA ligase, NAD-dependent [Mobiluncus mulieris 28-1]
          Length = 917

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 173/774 (22%), Positives = 294/774 (37%), Gaps = 172/774 (22%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI------ILDSEYDALKRR 54
           M+K++ IP       Q + E   L  +I      YY    P       + D++YDAL  R
Sbjct: 1   MRKKREIPP------QIQNEHQELVAQIEAARADYY--DNPDEHGVTRLSDADYDALFVR 52

Query: 55  CDAIAHAFPDLARSEDPNGPLNKI---------------------GGE----------MN 83
              +  ++P L     P+ P   +                     G              
Sbjct: 53  LQLLEGSYPALV---TPDSPTQTVGGGAGGGGGVKRAAAATTEAVGAAHVPENAVAVATT 109

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
                 TH+    S++ +++  ++  +  R+ +  + K       + E K+DG  +++ Y
Sbjct: 110 EGFPPHTHAKRMQSIDDVFSTAEVDAWWERVEKGLEGK---PFTVSAEVKVDGLAMSLTY 166

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALN 202
             G+ +  A RGDG  GEDV+A +R I T+P+ L    IP ++E+RGEVY+   DF  +N
Sbjct: 167 VDGQLMTGATRGDGRVGEDVTANVRTIKTVPQTLGGTVIPHLVEIRGEVYLPLEDFAQMN 226

Query: 203 DEMIAVG--------------------RKPYANPRNAASGILRRLNPTDITRYL-NFFVH 241
            E  A                         +ANPRNAA+G L++ +  +  +    F  H
Sbjct: 227 AEREANNAAWEAARAAGDKEKLKTLKKMPLFANPRNAATGSLKQKDSIEAAKRPLAFLAH 286

Query: 242 GLGKTSEI-----FAKGQYEMLQKMRCLGFPVNN--------GVRQANTFHGIVSYYNEM 288
           GLG              Q +  +++   G P            +    T   + +    M
Sbjct: 287 GLGAVQGWPDGVSPMATQEDFYRQLEVWGIPSVRRTPQSLGLRMAGLTTLTQVHAVLAAM 346

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
              R    + IDG+V KVD  + +  LG  AR+PRW  ++KF  ++  TRLL I++Q+GR
Sbjct: 347 TEHRHDFSHQIDGVVLKVDNLAARVLLGSTARAPRWACAYKFPPEEVHTRLLGIEVQVGR 406

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG +TP A +E V + G+ ++ ATLHN   +             +D+R GD V++++AG+
Sbjct: 407 TGRVTPFAVMERVLVDGSYVSRATLHNAKEVAR-----------KDVRPGDTVVLRKAGD 455

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           +IP+V+  +++ R      +  P  CP C +R+ ++      +     RC     C AQ 
Sbjct: 456 IIPEVLGPVLSLRPGGLPEWVMPEMCPSCGTRLGQE-----KEGDIDLRCPNQAGCPAQI 510

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSED----------------------------- 499
            ERL H  +R A +IEGLG++      + E                              
Sbjct: 511 TERLIHVGARGALDIEGLGEEGALALTQPEAGRADVAAALSAGGSCMLEDGTEIRVPAGK 570

Query: 500 --------------PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS-INK 544
                             +R  A +F L+ +          + G        +       
Sbjct: 571 PLELGAIESLLPPTQEPVLRSEAGLFDLKSKDLRDVFVWREVPGTAGRDWQQVRFFWAKP 630

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL------ 598
           +R  + E   F L    +G  +A    + + +    A+               L      
Sbjct: 631 KRVTAAEAATFGLVAGELGEPVAGKTVETFFNQLAAARSKETWRVLVALSIRHLGPVAAR 690

Query: 599 --------------IRVPL------VGDIIAQAIVEFYQNPRNICAVEALLKEV 632
                           V        VG +IA ++V++++ P +   V A  +  
Sbjct: 691 AVARRFPTLAAVAAADVEGLSQVEGVGAVIAASVVDWFRVPWHQEIVLAWTQAG 744



 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 41/81 (50%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
            +     +    LV TG +    R  AQ  V   G   +  +S+KT +++ G   GSKL 
Sbjct: 832 WEEPEQTLAGLTLVITGNIPGFTRESAQLAVEDRGGKATGSVSKKTSVVVAGTGAGSKLA 891

Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720
           KA+ LG+ ++  E+F  LL++
Sbjct: 892 KAEALGIPVIPAEEFPALLER 912


>gi|302562478|ref|ZP_07314820.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000]
 gi|302480096|gb|EFL43189.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000]
          Length = 533

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 167/559 (29%), Positives = 257/559 (45%), Gaps = 54/559 (9%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
                YY      + D  YD L R         PD      P  P  K+ G        V
Sbjct: 17  RAAAAYYGGGTSALDDDAYDRLVRGIADWEAEHPDAIL---PGSPTGKVAGGAVEG--DV 71

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H++P LSL+ +++ E+   +   + R       ++  F++ PK+DG  +  RY  G+  
Sbjct: 72  PHTVPMLSLDNVFSAEEFTAWTASLARRIG---HDAARFSVGPKLDGLAVAARYSDGRLT 128

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
               RGDG +GEDVS  I  +  +P  L   +   +EVRGEV ++   F   N+   A G
Sbjct: 129 RLITRGDGTAGEDVSHAIGTVEGLPEKLEEPV--TVEVRGEVLMTTAQFEHANEVRTAHG 186

Query: 210 RKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK--------GQYEMLQKM 261
            +P+ANPRNAA+G LR  +         FF +GL                    E++   
Sbjct: 187 GQPFANPRNAAAGTLRARDRVYTVPMT-FFGYGLLPLPGTDPALAGRLDDLPHSELMALA 245

Query: 262 RCLGFPVNNGVR----QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
           R LG   +         A T   +++   E+ + R+ LP+ IDG+V K D    Q+  G 
Sbjct: 246 RDLGVHTSARTAVPDVVAGTVEEVLARVKEIAAARAELPFGIDGIVIKADLAEEQRAAGS 305

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +R+PRW I++K    +  TRLL+++  +GRTGI+ P   LEPV I G+ IT ATLHN  
Sbjct: 306 GSRAPRWAIAYKLPAVEKITRLLEVEWNVGRTGIIAPRGVLEPVVIDGSTITYATLHNPA 365

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
            I             RD+R+GD V+V RAG+VIP++   + + R  + QP  FP+ CP C
Sbjct: 366 DITR-----------RDLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPAQCPRC 414

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            S +  D   +  +      C          +  L +   RD  +IEGLG  ++      
Sbjct: 415 GSDI--DTGEERWRCAQGRNC--------HLVASLAYAAGRDQLDIEGLGATRVVQLVD- 463

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +   AD+F L+R Q      +  +   G+ S  NL  ++ K +   L R + +L
Sbjct: 464 ---AGLVADLADLFALRREQ------LLALERMGETSTDNLLAALAKAKEQPLSRVLCAL 514

Query: 558 GIRHVGAEIARSLAKYYLS 576
           G+R  G  ++R +A+Y+ +
Sbjct: 515 GVRGTGRSMSRRIARYFAT 533


>gi|221134260|ref|ZP_03560565.1| DNA ligase (NAD(+)) [Glaciecola sp. HTCC2999]
          Length = 643

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 146/705 (20%), Positives = 261/705 (37%), Gaps = 106/705 (15%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDA-LKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
             L   +   + CY +   P++ D+ YD  L     A     P L           K+  
Sbjct: 36  EQLIAVLEATNACY-RAGFPLVEDAFYDHHLLSALQAREPDHPFLL----------KVEP 84

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK--DDNSIFFTLEPKIDGTM 138
           E+      +T     LS +K ++I ++ K++TRI +   +     + +   + PK+DG  
Sbjct: 85  EIVSG-KTITLPQKMLSTDKAYSITEIEKWVTRIKKAADELSIPHSDVNIRITPKLDGYA 143

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
               Y+ G       RGDG  G+D++        +      N  E     GE+ ISK  F
Sbjct: 144 A---YDDGN--TLYTRGDGVRGQDITRAFTRGLAVA-----NQGERGLGPGEIVISKQYF 193

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
                +        + N RN  + I+                  +     +       + 
Sbjct: 194 DTFLSDQ-------FENSRNIQAAIIAEKKIEPSVVKAIQDEACVFYPFALLPNWTGLID 246

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
                                        ++ I   + YDIDG++ +     ++  LG  
Sbjct: 247 VLAED--------------------VEARIEPIWQAVDYDIDGVILETTHPDIKAHLGAT 286

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
               RW I+ K  ++ A   +L +  Q  RTG ++PVA L P  + GA I+ AT+H+ + 
Sbjct: 287 RHHHRWQIAFKVNDESAEVEVLSVTPQTSRTGRVSPVAELVPTKLSGATISRATVHHYNM 346

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           ++              +  G  V + R+G VIPK+  +I             P  CP C 
Sbjct: 347 VQS-----------NGVGPGAIVQLVRSGLVIPKIEKVITAVTP------QLPDACPSCH 389

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S ++ + +           C     C AQ+   L HF      N +G G + ++   ++ 
Sbjct: 390 SHLIWEAD--------HLICPNKNDCPAQRENTLVHFFK-TLGNNDGFGPKVVEKLCQNG 440

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN--ISLERFIFS 556
                ++   DI+ L      +        GFG+ +  NL + +N  R+  I   RF+ +
Sbjct: 441 -----VKHIHDIYALGPVDLMAW-------GFGEKTALNLVEQLNVSRSVAIEDWRFLAA 488

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
            GI  +G      L ++  +                    +++ +     + A+AIVE  
Sbjct: 489 FGITRLGGGNGEKLLQH-HTLSELFDLT----------VDAMVEIDGFAQLSAEAIVEGL 537

Query: 617 QN-PRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            N       V  L    +            + +  K++VFTG++    R   +++   LG
Sbjct: 538 ANVKTEFFKVYELGFNLIVTPKLSESDLADTVLFGKQVVFTGSMTSGSRSDMEKHAKTLG 597

Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           A V   +S  T  +I GD  G +K+  A+  GV ++ E ++L ++
Sbjct: 598 AKVGKSVSGNTTYLITGDKVGANKINAARDKGVTVLTELEYLAMI 642


>gi|307826049|ref|ZP_07656262.1| DNA ligase (NAD(+)) [Methylobacter tundripaludum SV96]
 gi|307732888|gb|EFO03752.1| DNA ligase (NAD(+)) [Methylobacter tundripaludum SV96]
          Length = 654

 Score =  260 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 151/708 (21%), Positives = 273/708 (38%), Gaps = 106/708 (14%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
             L + +   +  Y +  +P I D++YD +      +    P     E        +  E
Sbjct: 42  EQLLEFLQVCNALY-RGGEPFISDADYDFVF--LAELQKRHPHHPYLET-------VEPE 91

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK--KDDNSIFFTLEPKIDGTMI 139
           +      VT   P LS EK ++   + K+++R+ +       D +++     PK+DG   
Sbjct: 92  VVAVGKTVTLPEPMLSTEKTYSQSGIEKWLSRLEKAADDCDVDFSTLMIRATPKLDGYAA 151

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
              Y+ GK      RGDG  G D+S        +         +  +  GE+ +S+  F 
Sbjct: 152 ---YDDGKL--LYTRGDGRKGTDISRVFERGLKV-----GGNGKRGQGAGEIVVSQTYFN 201

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
               +        + N RN  + I++  +              +          +    +
Sbjct: 202 NHLAD-------YFENSRNFQASIIKEKDLEQHALEAIQNHAAVFFPFSQLPDWKGTAAE 254

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDEFSLQKQLGER 318
            +      +                            YD+DG+V++ V    ++K LG  
Sbjct: 255 VLADFDQVIEKVYSLV--------------------DYDVDGVVFELVGNEQIKKYLGAT 294

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
               RW I++K   + A   ++ +  Q  R+G + PVA L P  + GA+I+ AT H+   
Sbjct: 295 RHHHRWQIAYKSNVETAEVIVIKVTPQTSRSGRVNPVAELTPTKLSGAVISRATAHHYGM 354

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
           +K L            I VG  + + R+G VIPK+  +I+ +          P  CP C 
Sbjct: 355 VKEL-----------GIGVGTLIELTRSGLVIPKIERVIIPKEP------QIPEHCPSCG 397

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S +V D +           C     C AQ    ++HF  R   N++G G++ ++      
Sbjct: 398 SELVWDSD--------YLYCLNTTKCPAQIENTIEHFF-RTLANVDGFGQKTVEKLHACG 448

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI--SLERFIFS 556
                I     ++ L   Q           GFGD +  NL D + + R+      RF+ +
Sbjct: 449 -----INSVYAVYQLDMEQLQDM-------GFGDKTAQNLMDQLQRSRSESIEDWRFLGA 496

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
            GI  +G      L +++     F                 +I +    +  + A+VE  
Sbjct: 497 FGIHRMGLGNCERLLQHHHLMDIF-----------KLTVEDVINIEGFAEKTSAAVVECL 545

Query: 617 QN-PRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
                +   +  L   +  +P I   ++N+ S I  K +VFTG +   +R    +   +L
Sbjct: 546 AKIKTDFMQIHQLGFNLIQTPLIAEQQQNI-SPISGKTIVFTGAMIHGKRDDMSKEAKRL 604

Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           GA V + ++ KTD ++ G + G +K+  A + GV++++EE +L LL +
Sbjct: 605 GAKVGSSVTGKTDFLVTGSDVGAAKIAAATEKGVRVISEEDYLALLGR 652


>gi|153217073|ref|ZP_01950837.1| DNA ligase [Vibrio cholerae 1587]
 gi|124113903|gb|EAY32723.1| DNA ligase [Vibrio cholerae 1587]
          Length = 324

 Score =  260 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 120/361 (33%), Positives = 196/361 (54%), Gaps = 39/361 (10%)

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           + +GG  ++NATLHN D I+ L            + VGD V+++RAG+VIP++V +++  
Sbjct: 1   MFVGGVTVSNATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLER 49

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
           R  +A+   FP+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVSR A
Sbjct: 50  RPENAKSIVFPTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKA 103

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            ++EGLG + ++     E     +  PAD+F L+        ++  +   G  S  N+ D
Sbjct: 104 MDVEGLGDKVIEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQNVID 153

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           ++NK +  +L +F+++LGIR VG   A +LA+++LS +   Q                I 
Sbjct: 154 ALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIE 203

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTL 658
           VP VG ++A  +  F+   RN   +  LL++    P++      V S +  K +V TG+ 
Sbjct: 204 VPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSF 263

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            ++ R+ A+  +  LGA V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L
Sbjct: 264 TQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFL 323

Query: 719 Q 719
           +
Sbjct: 324 K 324


>gi|68171542|ref|ZP_00544921.1| DNA ligase (NAD+) [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999047|gb|EAM85719.1| DNA ligase (NAD+) [Ehrlichia chaffeensis str. Sapulpa]
          Length = 366

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 153/388 (39%), Positives = 229/388 (59%), Gaps = 32/388 (8%)

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
             +A T+L  I IQIGRTG+LTP+A L P+NIGG ++T A+LHN++ I+           
Sbjct: 1   AAEAKTQLNKISIQIGRTGVLTPIAELSPINIGGVIVTRASLHNKNEIER---------- 50

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
            +DIR GD V+VKRAG+VIP++VD+  N R  +   F FP+ CP C S V +        
Sbjct: 51  -KDIREGDYVIVKRAGDVIPQIVDVDKNLRTQELTKFVFPTTCPSCGSSVYQAKQE---- 105

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
             A+  CTG L C  Q LE++KHFVS+DAFNI G GK+QL FF++       I    DIF
Sbjct: 106 --ASIYCTGELFCKDQILEKIKHFVSKDAFNIIGFGKKQLLFFYEQR----LITNITDIF 159

Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           TL+ +   S  K+E++ G+G+ S++NL+ +IN  + ISLE FIF+LGIR +G  IA+ LA
Sbjct: 160 TLEEKISNSDVKLESLHGWGEKSMSNLFSAINNSKVISLENFIFALGIRFIGKYIAKILA 219

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
            ++ SY+ +  E+  +  + +      + +  +G     ++  F+  P N+  +  L+K 
Sbjct: 220 NHFSSYETWYNEMLKLAQNEDYS----LNIQQIGSKTIGSLKMFFSQPHNLNMINDLVKH 275

Query: 632 VSPSIGRHEKNVSSEIE---NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           ++      +   SS +     K +VFTG L  + R +A+      GA VS+ LS+ TD +
Sbjct: 276 LTI----TDTQSSSYLSLIHGKIIVFTGELSSMSRSEAKIRSETAGAKVSSSLSKNTDFL 331

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           I G+NPGSK +KAQ L V+I+ E+ +L 
Sbjct: 332 IAGNNPGSKYKKAQSLNVQILTEDLWLQ 359


>gi|168017901|ref|XP_001761485.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687169|gb|EDQ73553.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1163

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 155/689 (22%), Positives = 277/689 (40%), Gaps = 55/689 (7%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
                + +L + I+ +   Y+    P+I DS YDAL R    +    P            
Sbjct: 315 DILDRVETLRRVIADYSYQYHTLGNPLISDSAYDALVRELKDLESKLP---AEASEESVT 371

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF----FTLE 131
            K+G    L + KV H++P LSL  ++  ++L+ +  R+ +   +  +        + +E
Sbjct: 372 AKVGAPPPLEIAKVRHAVPMLSLAAVYKEDELKAWHERLQQRLNRMSNGEQPSTGAWVVE 431

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE------II 185
           PK+DG  +T+ YE+GK V AA RGDG  GEDV+   R +  +P VLS +  E      ++
Sbjct: 432 PKVDGIALTLLYERGKLVCAATRGDGAEGEDVTHNARNLKGVPEVLSDHHKEINLQESVL 491

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL- 243
           EVRGEVY++  DF  LND  +  G KP+ANPRNA +G +R L   D   R L+F  + + 
Sbjct: 492 EVRGEVYMTLLDFQELNDMKVKGGEKPFANPRNATAGSMRILKNRDGDDRRLSFMAYAIL 551

Query: 244 ---------GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
                     +T     + Q++ L  ++ L F VN+  R+  +F   + Y    +  RST
Sbjct: 552 SPEDNVSAGVETPPRLVRAQWDALNLLKQLDFSVNDDNRKFASFDDALHYATRWRDSRST 611

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L Y+ DG+V+K+++ + Q +LG     PRW ++ KFA  +  T L  I++ IGR+G + P
Sbjct: 612 LKYESDGVVFKINDLATQAKLGVVGSDPRWAVAWKFAATEVVTILEGIELSIGRSGAIIP 671

Query: 355 VARLEPVNIGGALITNATLHNEDYI---------KGLDASGKVMRGGRDIR--VGDRVLV 403
            ARL+ + +  +        N  ++         + L           ++     D   V
Sbjct: 672 NARLKDITVSSSSDGCPLHFNPKFMFESENVAYSQLLSLYYVQCSWDDELCSLEVDVYQV 731

Query: 404 KRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463
               +   + +  ++     D   F  P       +  + + +P+         C G   
Sbjct: 732 VPHNQESSRTLGCLI-----DHITFLVPYLSRFACNEYLSNFSPEDRIWF--LTCNGWWK 784

Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR-QQTSTT 522
                 E +  F  ++   +  +         K          P  +  + R  +     
Sbjct: 785 NWESVKETMLLFNEQEMSYLRPINTYFAVLLSKFLVSFTCHFSPCQVVQVLRELRSDHMH 844

Query: 523 KIENILGFGDVSVTNL--YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580
                      +       D+       +      S  I+H    + + L    LS    
Sbjct: 845 SWVPPDRCPFCNGELTVSKDNNITSCCNNKCPGRHSRKIKHFAKTLFKGLGPSILSDLEE 904

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
           A  + +       D +SL R+  +G+  A  +V+  +  +     E +     PS+G   
Sbjct: 905 AGMVVDPADFYALDVVSLSRLDGLGEKSAAKLVKAIEESKGKALWELITALGIPSVGVTA 964

Query: 641 KNVSSEIENKKLVFTGTLQKI---QRHKA 666
             +  +         G+++++    R + 
Sbjct: 965 AKLLEQWF-------GSMERLLVASREEL 986



 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 135/382 (35%), Gaps = 70/382 (18%)

Query: 373  LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK-VVDIIVNERHPDAQPFSFP 431
            L NE  +  L              +  + LV       P  VV ++   R      +  P
Sbjct: 795  LFNEQEMSYLRPINTYFAV-----LLSKFLVSFTCHFSPCQVVQVLRELRSDHMHSWVPP 849

Query: 432  SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
              CP C   +    +           C     C  +   ++KHF          L K   
Sbjct: 850  DRCPFCNGELTVSKDNN------ITSCCNNK-CPGRHSRKIKHFAK-------TLFKGLG 895

Query: 492  DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                   + A  +  PAD + L          +  + G G+ S   L  +I + +  +L 
Sbjct: 896  PSILSDLEEAGMVVDPADFYAL------DVVSLSRLDGLGEKSAAKLVKAIEESKGKALW 949

Query: 552  RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
              I +LGI  VG   A+ L +++ S +                   L+ VP +G + A A
Sbjct: 950  ELITALGIPSVGVTAAKLLEQWFGSMERLLVA----------SREELLLVPGIGTVSASA 999

Query: 612  IVEFYQNPRNICAVEALLKEV------SPSIGRHEK------------------------ 641
            I ++  +P N+  V ++ +         P I  H                          
Sbjct: 1000 IHDWCTDPFNVQLVSSIKEAGFSPTFNDPEIENHAAGNALSDSASQTTTSKVRTTDSEES 1059

Query: 642  --NVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SK 697
              NV +  ++ K +V TG  ++  R + ++ V   G  +   ++ KT  I+ G +PG SK
Sbjct: 1060 KGNVETPRLQGKNVVVTGEFEEYSREQIEQLVVLNGGQLRKSVNSKTSFIVAGQSPGPSK 1119

Query: 698  LEKAQQLGVKIMNEEQFLFLLQ 719
            + KA QL V +++   F  LL+
Sbjct: 1120 MTKAAQLAVPVLDISSFQQLLE 1141


>gi|254229733|ref|ZP_04923142.1| DNA ligase [Vibrio sp. Ex25]
 gi|151937778|gb|EDN56627.1| DNA ligase [Vibrio sp. Ex25]
          Length = 287

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 83/254 (32%), Positives = 126/254 (49%), Gaps = 8/254 (3%)

Query: 11  ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70
            +S E   + L  L++ + YH   YY    P I D+EYD L R    I    PDL     
Sbjct: 20  TMS-ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITV-- 76

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
            + P  ++GG+   +  +VTH +P LSL+  ++  +L  F  R       +      +  
Sbjct: 77  -DSPSQRVGGQPLSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQERVGSQSVK--EYCC 133

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189
           EPK+DG  +++ YE G  V AA RGDG +GE+++  +R I  IP  L  N  P  +EVRG
Sbjct: 134 EPKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRG 193

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSE 248
           EV++ K  F  LN+     G K + N RNAA+G LR+L+     +R L+F+ +  G+  +
Sbjct: 194 EVFMPKAGFEKLNELARKKGEKIFVNXRNAAAGSLRQLDSRITASRPLSFYAYSGGRGCK 253

Query: 249 IFAKGQYEMLQKMR 262
                Q       +
Sbjct: 254 ALNWRQVTTNASCK 267


>gi|281307118|pdb|3JSL|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+-
           Dependent Dna Ligase From Staphylococcus Aureus
 gi|281307119|pdb|3JSL|B Chain B, Crystal Structure Of The Adenylation Domain Of Nad+-
           Dependent Dna Ligase From Staphylococcus Aureus
 gi|281307120|pdb|3JSN|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+-
           Dependent Dna Ligase From Staphylococcus Aureus
          Length = 318

 Score =  257 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 108/322 (33%), Positives = 168/322 (52%), Gaps = 11/322 (3%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVEYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  +   +   +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  N    + N   G++ Y  +  S R +LPYDIDG+V KV++   Q
Sbjct: 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQ 290

Query: 313 KQLGERARSPRWMISHKFAEKQ 334
            ++G   +SPRW I++KF  ++
Sbjct: 291 DEMGFTQKSPRWAIAYKFPAEE 312


>gi|119945995|ref|YP_943675.1| DNA ligase (NAD(+)) [Psychromonas ingrahamii 37]
 gi|166216251|sp|A1SX61|DNLJ_PSYIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119864599|gb|ABM04076.1| DNA ligase (NAD(+)) [Psychromonas ingrahamii 37]
          Length = 649

 Score =  256 bits (654), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 151/696 (21%), Positives = 277/696 (39%), Gaps = 103/696 (14%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92
           + +Y+ ++ II DS YDA            P L            +  E+      V   
Sbjct: 50  NAFYRSAEQIINDSTYDAFLSEFSTYNPDHPYLLT----------VEPEVLADSKTVPLP 99

Query: 93  IPTLSLEKIWNIEDLRKFITRIYRFWQKKD--DNSIFFTLEPKIDGTMITIRYEKGKFVY 150
              LS +K ++ E+++K+I R+ +   +    ++ I   + PK+DG      Y+ G  + 
Sbjct: 100 KKMLSTDKAYSFEEIKKWIDRLLKAAIEVGVSESEIQIKVTPKLDGYAA---YDDG--IS 154

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
              RGDG  G+D++        +       +       GE+ I K+ F  +  +      
Sbjct: 155 LYTRGDGARGQDITRAFNKGLQVANNGDRGLGP-----GEIVIKKSYFDTVLSD------ 203

Query: 211 KPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270
             + N RN  + I+      +  +        +G             +     +     +
Sbjct: 204 -KFENSRNIQAAIIAEKKVDESIQ----KAIDVGACVFFPFLSLENWIGHYTEILVDFES 258

Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
            V +                + S + YDIDG+V +V   +L++ +G      RW I+ K 
Sbjct: 259 IVEK----------------MWSAVDYDIDGVVLEVTNETLKEHMGATRHHHRWQIAFKV 302

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
             + A  ++L++  Q  RTG +TPVA LEP  + GA I+ AT+H+ + +K          
Sbjct: 303 NAESAEVKVLNVTPQTSRTGRVTPVAELEPTKLSGATISRATVHHYNMVK---------- 352

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450
               +  G  V + R+G VIPK+  +I       A        CP C + ++ + +    
Sbjct: 353 -TNGVGPGAIVQLVRSGLVIPKIEKVI------KAVEPQLAKECPSCGTHLIWESD---- 401

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
                  C     C AQ    L HF      N +G G + ++   +       I+   +I
Sbjct: 402 ----HLVCPNKTDCPAQTENTLVHFFK-TLGNNDGFGPKVIEKLHEFG-----IKKIHEI 451

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN--ISLERFIFSLGIRHVGAEIAR 568
           + L++    S        GFGD +  NL + +   R+  I   RF+ + G+  +      
Sbjct: 452 YELKQESFVSF-------GFGDKTAQNLVEQLQVSRDVEIEDWRFLAAFGVSRLAGGNCE 504

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN-PRNICAVEA 627
            L ++  S  +  +               L+++     + A AIVE   N       + A
Sbjct: 505 KLLQH-HSLDSLFEAT----------VEDLVQLDGFAQVSADAIVEGLANIKEEFLKLSA 553

Query: 628 LLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           L   ++ +    EK+   + +  K +VFTG + +  R   ++    LGA V+  ++ KT 
Sbjct: 554 LNFNLTITPKASEKSPGETPVFGKIIVFTGAMTQGSRGDMEKQAKALGAKVAKSVTGKTS 613

Query: 687 IIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +++ GD  G +K+  A+  GV++++E  +L L+  Y
Sbjct: 614 LLVTGDKVGANKINAARDKGVQVLSELDYLALISTY 649


>gi|145627933|ref|ZP_01783734.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.1-21]
 gi|145640788|ref|ZP_01796371.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
 gi|144979708|gb|EDJ89367.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.1-21]
 gi|145274714|gb|EDK14577.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.4-21]
          Length = 278

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 83/270 (30%), Positives = 136/270 (50%), Gaps = 7/270 (2%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   + +L +L + +  ++  Y+    P + DSEYD L  +  A+    P+   S   + 
Sbjct: 1   MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK
Sbjct: 58  PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192
           +DG  ++I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGEV+
Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF- 250
           +    F  LN   +    K +ANPRNAA+G LR+L+P   ++       +G+G    +  
Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHG 280
               Y  LQ ++ +G PVN  +R  N    
Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADE 266


>gi|309800538|ref|ZP_07694688.1| DNA ligase [Streptococcus infantis SK1302]
 gi|308115831|gb|EFO53357.1| DNA ligase [Streptococcus infantis SK1302]
          Length = 315

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 99/324 (30%), Positives = 167/324 (51%), Gaps = 11/324 (3%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           + +  L + ++ +   YY    P + DSEYD L R    +  A PD      P  P +++
Sbjct: 3   ERMKELVELLNRYATEYYTSDNPSVSDSEYDRLYRELVELEKARPDQVL---PESPTHRV 59

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
           GG++     K +H  P  SL+  ++ E+L  F  R+ +       + + +  E KIDG  
Sbjct: 60  GGKILDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEL-----DDVTYICELKIDGLS 114

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I++ YE+G FV  A RGDG  GE+++  ++ +  IP  L   +   I VRGE Y+ +  F
Sbjct: 115 ISLTYEQGIFVAGATRGDGSIGENITENLKRVKDIPLSLPEKL--DITVRGECYMPRVSF 172

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
             +N      G   +ANPRNAA+G LR+L+   +    N       + S      Q ++L
Sbjct: 173 DQVNQSRQENGEPEFANPRNAAAGTLRQLDTAVV-AKRNLATFLYQEASPSTRDSQEKVL 231

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +  LGF VN     A++   + ++  E+   R  LPYDIDG+V K+++ + Q+QLG  
Sbjct: 232 KHLEQLGFVVNQRRLLAHSMDEVWTFIQEIGRERDQLPYDIDGVVIKINDLAGQEQLGFT 291

Query: 319 ARSPRWMISHKFAEKQASTRLLDI 342
            ++P+W +++KF  ++   +LL +
Sbjct: 292 VKAPKWAVAYKFPAEEKEAKLLSV 315


>gi|306818992|ref|ZP_07452709.1| NAD-dependent DNA ligase LigA [Mobiluncus mulieris ATCC 35239]
 gi|304648185|gb|EFM45493.1| NAD-dependent DNA ligase LigA [Mobiluncus mulieris ATCC 35239]
          Length = 917

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 151/570 (26%), Positives = 249/570 (43%), Gaps = 102/570 (17%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI------ILDSEYDALKRR 54
           M+K++ IP       Q + E   L  +I      YY    P       + D++YDAL  R
Sbjct: 1   MRKKREIPP------QIQNEHQELVAQIEAARADYY--DNPDEHGVTRLSDADYDALFVR 52

Query: 55  CDAIAHAFPDLARSEDPNGPLNKI---------------------GGE----------MN 83
              +  ++P L     P+ P   +                     G              
Sbjct: 53  LQLLEGSYPALV---TPDSPTQTVGGGAGGGGGVKRAAAATTEAVGAAHVPENTVAVATT 109

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
                 TH+    S++ +++  ++  +  R+ +  + K       + E K+DG  +++ Y
Sbjct: 110 EGFPPHTHAKRMQSIDDVFSTAEVDAWWERVEKGLEGK---PFTVSAEVKVDGLAMSLTY 166

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALN 202
             G+ +  A RGDG  GEDV+A +R I T+P+ L    IP ++E+RGEVY+   DF  +N
Sbjct: 167 VDGQLMTGATRGDGRVGEDVTANVRTIKTVPQTLGGTVIPHLVEIRGEVYLPLEDFAQMN 226

Query: 203 DEMIAVG--------------------RKPYANPRNAASGILRRLNPTDITRYL-NFFVH 241
            E  A                         +ANPRNAA+G L++ +  +  +    F  H
Sbjct: 227 AEREANNAAWEAARAAGDKEKLKTLKKMPLFANPRNAATGSLKQKDSIEAAKRPLAFLAH 286

Query: 242 GLGKTSEI-----FAKGQYEMLQKMRCLGFPVNN--------GVRQANTFHGIVSYYNEM 288
           GLG              Q +  +++   G P            +    T   + +    M
Sbjct: 287 GLGAVQGWPDGVSPMATQEDFYRQLEVWGIPSVRRTPQSLGLRMAGLTTLTQVHAVLAAM 346

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
              R    + IDG+V KVD  + +  LG  AR+PRW  ++KF  ++  TRLL I++Q+GR
Sbjct: 347 TEHRHDFSHQIDGVVLKVDNLAARVLLGSTARAPRWACAYKFPPEEVHTRLLGIEVQVGR 406

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG +TP A +E V + G+ ++ ATLHN   +             +D+R GD V++++AG+
Sbjct: 407 TGRVTPFAVMERVLVDGSYVSRATLHNAKEVAR-----------KDVRPGDTVVLRKAGD 455

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           +IP+V+  +++ R      +  P  CP C +R+ ++      +     RC     C AQ 
Sbjct: 456 IIPEVLGPVLSLRPRGLPEWVMPEMCPSCGTRLGQE-----KEGDIDLRCPNQAGCPAQI 510

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
            ERL H  +R A +IEGLG++      + E
Sbjct: 511 TERLIHVGARGALDIEGLGEEGALALTQPE 540



 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 41/81 (50%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
            +     +    LV TG +    R  AQ  V   G   +  +S+KT +++ G   GSKL 
Sbjct: 832 WEEPEQTLAGLTLVITGIIPGFTRESAQLAVEDRGGKATGSVSKKTSVVVAGTGAGSKLA 891

Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720
           KA+ LG+ ++  E+F  LL++
Sbjct: 892 KAEALGIPVIPAEEFPALLER 912



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 82/281 (29%), Gaps = 14/281 (4%)

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR--VLVKRAGEVIPK 412
               E     G  +      + D      A        R I VG R  + ++  GE    
Sbjct: 475 WVMPEMCPSCGTRLGQEKEGDIDLRCPNQAGCPAQITERLIHVGARGALDIEGLGEEGAL 534

Query: 413 VVDIIVNERHPDAQPFSFPSFCP-ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
            +      R   A   S    C     + +                         +    
Sbjct: 535 ALTQPEAGRADVAAALSAGGSCMLEDGTEIRVPAGKPLELGAIESLLPPTQEPVLRSEAG 594

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L    S+D  ++    +         +   F    P    T            E      
Sbjct: 595 LFDLKSKDLRDVFVWREVPGTAGRDWQQVRFFWAKP-KRVTAAEAATFGLVAGELGEPVA 653

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
             +V   ++ +   R+    R + +L IRH+G   AR++A+ + +            A  
Sbjct: 654 GKTVETFFNQLAAARSKETWRVLVALSIRHLGPVAARAVARKFPTL----------AAVA 703

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
             D   L +V  VG +IA ++V++++ P +   V A  +  
Sbjct: 704 AADVEDLSQVEGVGTVIAASVVDWFRVPWHQEIVLAWTQAG 744


>gi|307700359|ref|ZP_07637399.1| DNA ligase (NAD+) [Mobiluncus mulieris FB024-16]
 gi|307614570|gb|EFN93799.1| DNA ligase (NAD+) [Mobiluncus mulieris FB024-16]
          Length = 917

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 151/570 (26%), Positives = 249/570 (43%), Gaps = 102/570 (17%)

Query: 1   MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI------ILDSEYDALKRR 54
           M+K++ IP       Q + E   L  +I      YY    P       + D++YDAL  R
Sbjct: 1   MRKKREIPP------QIQNEHQELVAQIEAARADYY--DNPDEHGVTRLSDADYDALFVR 52

Query: 55  CDAIAHAFPDLARSEDPNGPLNKI---------------------GGE----------MN 83
              +  ++P L     P+ P   +                     G              
Sbjct: 53  LQLLEGSYPALV---TPDSPTQTVGGGAGGGGGVKRAAAATTEAVGAAHVPENAVAVATT 109

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
                 TH+    S++ +++  ++  +  R+ +  + K       + E K+DG  +++ Y
Sbjct: 110 EGFPPHTHAKRMQSIDDVFSTAEVDAWWERVEKGLEGK---PFTVSAEVKVDGLAMSLTY 166

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALN 202
             G+ +  A RGDG  GEDV+A +R I T+P+ L    IP ++E+RGEVY+   DF  +N
Sbjct: 167 VDGQLMTGATRGDGRVGEDVTANVRTIKTVPQTLGGTVIPHLVEIRGEVYLPLEDFAQMN 226

Query: 203 DEMIAVG--------------------RKPYANPRNAASGILRRLNPTDITRYL-NFFVH 241
            E  A                         +ANPRNAA+G L++ +  +  +    F  H
Sbjct: 227 AEREANNAAWEAARAAGDKEKLKTLKKMPLFANPRNAATGSLKQKDSIEAAKRPLAFLAH 286

Query: 242 GLGKTSEI-----FAKGQYEMLQKMRCLGFPVNN--------GVRQANTFHGIVSYYNEM 288
           GLG              Q +  +++   G P            +    T   + +    M
Sbjct: 287 GLGAVQGWPDGVSPMATQEDFYRQLEVWGIPSVRRTPQSLGLRMAGLTTLTQVHAVLAAM 346

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
              R    + IDG+V KVD  + +  LG  AR+PRW  ++KF  ++  TRLL I++Q+GR
Sbjct: 347 TEHRHDFSHQIDGVVLKVDNLAARALLGSTARAPRWACAYKFPPEEVHTRLLGIEVQVGR 406

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG +TP A +E V + G+ ++ ATLHN   +             +D+R GD V++++AG+
Sbjct: 407 TGRVTPFAVMERVLVDGSYVSRATLHNAKEVAR-----------KDVRPGDTVVLRKAGD 455

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           +IP+V+  +++ R      +  P  CP C +R+ ++      +     RC     C AQ 
Sbjct: 456 IIPEVLGPVLSLRPRGLPEWVMPEMCPSCGTRLGQE-----KEGDIDLRCPNQAGCPAQI 510

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
            ERL H  +R A +IEGLG++      + E
Sbjct: 511 TERLIHVGARGALDIEGLGEEGALALTQPE 540



 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 41/81 (50%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
            +     +    LV TG +    R  AQ  V   G   +  +S+KT +++ G   GSKL 
Sbjct: 832 WEEPEQTLAGLTLVITGNIPGFTRESAQLAVEDRGGKATGSVSKKTSVVVAGTGSGSKLA 891

Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720
           KA+ LG+ ++  E+F  LL++
Sbjct: 892 KAEALGIPVIPAEEFPALLER 912



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 82/281 (29%), Gaps = 14/281 (4%)

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR--VLVKRAGEVIPK 412
               E     G  +      + D      A        R I VG R  + ++  GE    
Sbjct: 475 WVMPEMCPSCGTRLGQEKEGDIDLRCPNQAGCPAQITERLIHVGARGALDIEGLGEEGAL 534

Query: 413 VVDIIVNERHPDAQPFSFPSFCP-ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
            +      R   A   S    C     + +                         +    
Sbjct: 535 ALTQPEAGRADVAAALSAGGSCMLEDGTEIRVPAGKPLELGAIESLLPPTQEPVLRSEAG 594

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           L    S+D  ++    +         +   F    P    T            E      
Sbjct: 595 LFDLKSKDLRDVFVWREVPGTAGRDWQQVRFFWAKP-KRVTAAEAATFGLVAGELGEPVA 653

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
             +V   ++ +   R+    R + +L IRH+G   AR++A+ + +            A  
Sbjct: 654 GKTVETFFNQLAAARSKETWRVLVALSIRHLGPVAARAVARKFPTL----------AAVA 703

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
             D   L +V  VG +IA ++V++++ P +   V A  +  
Sbjct: 704 AADVEDLSQVEGVGTVIAASVVDWFRVPWHQEIVLAWTQAG 744


>gi|332992915|gb|AEF02970.1| DNA ligase (NAD(+)) [Alteromonas sp. SN2]
          Length = 649

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 152/697 (21%), Positives = 278/697 (39%), Gaps = 102/697 (14%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           I    +  Y+   PI+ D +YD          H  P L          N +  E  +   
Sbjct: 48  ILKASNALYRAGSPILSDKQYDIYISLLRDQNHLHPYL----------NTVEPEPLIESK 97

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK--DDNSIFFTLEPKIDGTMITIRYEK 145
            V      LS EK ++++D+ K++ RI +  Q+    +  I   + PK+DG      Y+ 
Sbjct: 98  TVELPERMLSTEKAYSLQDIEKWVKRIQKAAQETNVPEEEIDIRVTPKLDGYAA---YDD 154

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
           G       RGDG+ G+DV+   +    +      N  E     GE+ I K+ F  +    
Sbjct: 155 GD--TLYTRGDGYRGQDVTRAFKRGLKVA-----NSGERGLGPGEIVIKKSYFTEVLSS- 206

Query: 206 IAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
                  + N RN  + I+      +  +        +     +                
Sbjct: 207 ------YFENSRNIQAAIIAEKKVDNRIQKAIKDGACVFYPFAL---------------- 244

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
              NN V+ +       S     + I S++ +D+DG++ +    +++K +G   R+ RW 
Sbjct: 245 -LKNNTVKISVLMDEFESIV---EGIWSSVDFDVDGVILETTNETIKKYMGATRRNHRWQ 300

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
           I+ K  E+ A+  ++ +  Q  RTG + PVA L P  + G  I+  T+H+ + +K     
Sbjct: 301 IAFKVNEESANVEVVRVIPQTSRTGRIAPVAELVPTKLSGVTISRVTVHHYNMVK----- 355

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                    +  G  + + R+G VIPK+ +++             P  CP C S ++ + 
Sbjct: 356 ------TNGVGAGAIIRLVRSGLVIPKIEEVLTKVAPD------IPDSCPSCGSHLLWES 403

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
           +           C   + C AQ    L HF      N     K         +  +F ++
Sbjct: 404 DN--------LICPNKIDCPAQTENTLVHFFKTLGNNDGFGSKTI------EKLTSFGVK 449

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR--NISLERFIFSLGIRHVG 563
              +I++L+              GFG+ +  NL++ +   R   I   RF+ + G+  +G
Sbjct: 450 YIHEIYSLEVDDFLKI-------GFGEKTAINLFNQLQASRSIEIEDWRFLSAFGVSRLG 502

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN-PRNI 622
           +     L ++  S  +  +               +I++    +I A+AI E  +N     
Sbjct: 503 SGNCEKLLEH-HSLVSLFELT----------VSDMIQIDGFAEISAEAIKEGLENIREEF 551

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             V  L   + P+   + + +SS I    +VFTGT+ +  R   ++    LGA V   ++
Sbjct: 552 FKVYDLGFALRPTAIENTEKLSSPISGAIIVFTGTMIEGSRSDMEKNAKALGAKVGKSVT 611

Query: 683 RKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            KT  ++ GD  G +K+  A+  GVK+++E+Q+L  +
Sbjct: 612 SKTTYLVTGDKVGETKINAAKDKGVKVLSEQQYLDFI 648


>gi|218515813|ref|ZP_03512653.1| NAD-dependent DNA ligase LigA [Rhizobium etli 8C-3]
          Length = 216

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 98/218 (44%), Positives = 142/218 (65%), Gaps = 3/218 (1%)

Query: 3   KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
             +   ++ L+IE+A  EL  L +EI++HD  Y+   +P I D++YDALKRR DA+   F
Sbjct: 2   STEGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEARF 61

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P+L R    + P   +G   +++   V H+ P LSL+  ++ ED++ F+  +YRF  +  
Sbjct: 62  PELIRE---DSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLP 118

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
           D SI FT EPKIDG  ++IRYE G+ V AA RGDG +GE+V+A IR I  IP  L   +P
Sbjct: 119 DQSIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVP 178

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220
            ++E+RGEVY++K+DFLALN +M A G++ Y NPRN A
Sbjct: 179 AVVEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTA 216


>gi|167461915|ref|ZP_02327004.1| NAD-dependent DNA ligase LigA [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 363

 Score =  247 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 109/363 (30%), Positives = 176/363 (48%), Gaps = 17/363 (4%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  L +EI+ H+  YY   +P I D EYDAL  R   +       + +  PN P  ++GG
Sbjct: 8   MKILIEEINKHNYHYYTLDEPTITDQEYDALYDRLLKLEKE----SGTVLPNSPTLRVGG 63

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-------NSIFFTLEPK 133
           ++        H     SL+K  +IE L+ +  R+ +     +            F +E K
Sbjct: 64  DILKGFEPHRHRSRLWSLDKAQSIEVLKNWHNRVQKLVNDYNSKNPSTPLPEPSFAVELK 123

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
            DG  I + Y++G  V A+ RG+G  GE + A ++ I ++P  +      +IEV+GE  +
Sbjct: 124 FDGLTINLTYDQGNLVQASTRGNGVVGEGILAQVKTIKSVPLEIPYK-EGLIEVQGEGMM 182

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
             +     N        +P  N RNAA+G LR LNP     R L  F + +G +      
Sbjct: 183 LLSVLDQYNQTA----AEPLKNARNAAAGALRNLNPKVTAERRLTAFFYNVGFSDRKQFM 238

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              EM+  ++   F VN  V+  NT   +     +++  R    + IDG V KV +   +
Sbjct: 239 NHQEMIAFLKENHFKVNPYVKYFNTIDEVFEEMKKLEQERHDFDFLIDGAVIKVTDIRTR 298

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           + LG   + PRW I++KF  ++ +T L  +  ++GRTG +TPVA++EPV + G  + N T
Sbjct: 299 EVLGYTEKFPRWAIAYKFEAEEVTTVLEGVSWEVGRTGKITPVAKVEPVELAGVTVQNCT 358

Query: 373 LHN 375
           L+N
Sbjct: 359 LNN 361


>gi|330722383|gb|EGH00233.1| DNA ligase [gamma proteobacterium IMCC2047]
          Length = 258

 Score =  247 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 68/194 (35%), Positives = 108/194 (55%), Gaps = 6/194 (3%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           ++    R+E+ +L  +++ H+  YY   +P I D EYD L R+   I    P+L      
Sbjct: 1   MTSAPLRQEVEALRAQLNQHNYRYYVLDEPSIPDVEYDRLLRQLQTIEAQHPELI---SQ 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           + P  ++G +   +  +VTH +  LSL+  +N +++R F  RI      KD + + F  E
Sbjct: 58  DSPTQRVGAQPLTAFGEVTHDMRMLSLDNAFNDDEMRDFERRIKDRL--KDTSELEFVCE 115

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190
           PK+DG  +++ YE G FV  A RGDG +GE+++  +R +P+IP  L     PE +EVRGE
Sbjct: 116 PKLDGIAVSLLYENGIFVRGATRGDGQTGENITQNLRTVPSIPLTLMGTGWPERLEVRGE 175

Query: 191 VYISKNDFLALNDE 204
           VY+ K  F A N +
Sbjct: 176 VYMPKAGFDAFNKQ 189


>gi|149198973|ref|ZP_01876014.1| NAD-dependent DNA ligase [Lentisphaera araneosa HTCC2155]
 gi|149137968|gb|EDM26380.1| NAD-dependent DNA ligase [Lentisphaera araneosa HTCC2155]
          Length = 647

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 131/712 (18%), Positives = 244/712 (34%), Gaps = 96/712 (13%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           + +L+ ++   +  Y    +  + D+EYD L      +        R         K+G 
Sbjct: 3   IDALKAKLDQANQLYRTGGESPLSDAEYDYL------LEQVNDQKFRD--------KVGY 48

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
           E+  +  KV  ++P  SL KI    ++  +         K         + PK DG  + 
Sbjct: 49  EIEKN--KVELAVPMGSLNKIKTQAEVFDWSK------SKSIPLDTEICVTPKYDGLSLL 100

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + +  G +  A  RGDG  G+DV       P     L L       + GE  + +  F  
Sbjct: 101 VYFVDGIYKGAYTRGDGMFGQDVGEHFTVNP--LCDLRLPQDFTGYLIGECIMDEAKFQT 158

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
              E        + NPRN  +G+L R   +     + +  +G+        + Q E   +
Sbjct: 159 KYSE-------KFKNPRNMVAGLLSRKTLSRELADVCYVAYGVRSAQMAHKQDQVEFCNR 211

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
                +               +      K   S   +  DGLV ++++  L  Q+G+   
Sbjct: 212 YINAQWKYKVLCPL--YKLEDLKDAELQKVYDSETRFQCDGLVLEINDSDLFHQIGKETN 269

Query: 321 --SPRWMISHKFAEKQAS-TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
             +P    + K     +  + + ++  QI + G   PV R+EP+++ G  I+N T  N  
Sbjct: 270 SLNPGAARAWKPESDDSLPSIVKEVVWQISKNGAAKPVIRIEPIDLAGVTISNVTGINAR 329

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
           +I+              I  G  V + R+G+VIPKV+ +         +    P  CP C
Sbjct: 330 FIE-----------DSGIAKGATVTIIRSGDVIPKVIGVPNAI-----ENVDLPKQCPSC 373

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
           +S +V + N           C   L  +  +   +  F +  A   + +G+  +   + +
Sbjct: 374 ESELVWNEN------RVDIVCENKLCPATNKAALIDFFSTLKA---DEVGEGIITSLWDA 424

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                         +++     +   +  + GF       + DSI           +   
Sbjct: 425 G-----------YQSVKNLLNLTMEDLLKLEGFKQRKAKKVLDSIKISVVDVPLPRLQHA 473

Query: 558 GIRHVGAEIARS-LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
                G    +  L + Y              A     +  L+ V    +I A++ ++  
Sbjct: 474 SNLFKGLGEKKLELLQKY------------DQAGIKPSFEELLEVDGYSEISAKSYLD-- 519

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                      L         +   N       + LVFTG     +  + +E V   G  
Sbjct: 520 SIDAYWEFAAEL---PGLKYKKVLVNEGGMFAGQTLVFTG----FRSPELEEQVKTEGGK 572

Query: 677 VSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           + + +S+KT +++V       SK +KA  LGV++   +     L        
Sbjct: 573 IGSSVSKKTSVLVVKAKGSGSSKEKKAIDLGVEVWGRDDLENKLNSAEDEPE 624


>gi|325662258|ref|ZP_08150873.1| hypothetical protein HMPREF0490_01611 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471510|gb|EGC74731.1| hypothetical protein HMPREF0490_01611 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 402

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 111/438 (25%), Positives = 199/438 (45%), Gaps = 42/438 (9%)

Query: 284 YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDID 343
            ++             DGLV   D+ +  + LG  A+ PR   + K+A++   T L +I+
Sbjct: 1   MFDFFAEHIEENDIPSDGLVLTYDDIAYGQSLGSTAKFPRDSFAFKWADEIRETTLREIE 60

Query: 344 IQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLV 403
               RTG++ PVA  +PV + G  ++ A++HN   ++ L+           + +GD + V
Sbjct: 61  WSPSRTGLINPVAIFDPVELEGTTVSRASVHNLSIMEELE-----------LGIGDTIQV 109

Query: 404 KRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463
            +A  +IP++ + +             P  CP C                          
Sbjct: 110 YKANMIIPQIAENLTRSGMA-----PVPECCPACGGET-----EIRQVSDTKTLYCTNPD 159

Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK 523
           C A+ ++    FVSRDA NI+GL +  L+ F         IR  +DIF L+R       +
Sbjct: 160 CGAKHIKAFSLFVSRDAMNIDGLSEATLEKFITR----GFIRHFSDIFHLERY----GEE 211

Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
           I ++ GFG+ S  NL DSI K R  +L + I+ LGI ++G   A+ + + +         
Sbjct: 212 IRSMEGFGEKSYKNLQDSIEKARTTTLPKLIYGLGIANIGLSNAKMICRAFD-------- 263

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
             ++      D  +L  +  VGD+IA+A V+++    +      LL+EV        +  
Sbjct: 264 -YDVEKMLQADVEALNEIQGVGDVIARAFVDYFAVEDHREEFFRLLEEVKIPEEETTQEE 322

Query: 644 SSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEK 700
                    V TG+++    R++ +E +   G  V+  ++ KT+ +I    ++  SK +K
Sbjct: 323 Q-IFAGMNFVITGSVEHFANRNEVKEVIESKGGKVTGSVTSKTNWLINNDVESTSSKNKK 381

Query: 701 AQQLGVKIMNEEQFLFLL 718
           A++LG+ I++E+ FL ++
Sbjct: 382 ARELGIPIISEDTFLKMI 399


>gi|297250739|ref|ZP_06934237.1| DNA ligase, NAD-dependent [Neisseria polysaccharea ATCC 43768]
 gi|296838226|gb|EFH22164.1| DNA ligase, NAD-dependent [Neisseria polysaccharea ATCC 43768]
          Length = 539

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 158/555 (28%), Positives = 243/555 (43%), Gaps = 141/555 (25%)

Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347
           M+  R  LPY+IDG+V KV+  + Q++LG  +R+PRW I+HKF  ++  T +  ID+QIG
Sbjct: 1   MQQKRPELPYEIDGMVVKVNSLAQQRELGFISRAPRWAIAHKFPAEETLTVVEAIDVQIG 60

Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407
           RTG +TPVARL+PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG
Sbjct: 61  RTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAG 109

Query: 408 EVIPKVVDIIVNERHPDA---------------------------------QPFSFPSFC 434
           +VIP+VV +I   R                                     +P+  P+ C
Sbjct: 110 DVIPEVVRVIFERRPMQETDVTGLSDGIGHRQDDLFAEAPAANQTQSVPLHKPYRLPTRC 169

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC+S + R+         A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++  
Sbjct: 170 PICRSEIEREEGE------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQL 223

Query: 495 FKSEDPAFSIRIPA-DIFTLQRRQQTSTTKIENILGFG----------------DVSVTN 537
              +       +   DI TLQ+ ++ +   +  +                         N
Sbjct: 224 VAQDLVRHFADLYRLDIPTLQKMKEAADKTVAELDQMPSEGSSVGASGKHKKQPTKWAEN 283

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--------------- 582
           +   I   +   L RF+F+LGIRHVG   A++LA+ + + +   +               
Sbjct: 284 ILAGIEASKTPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTV 343

Query: 583 -----EINNIIAHNNDDWLSLIR--------------------------VPL--VGDIIA 609
                      A        L+                           +P   + +  A
Sbjct: 344 VAHSIAHFFAQAEQQAMIDELLAAGVTPQTQAVTIPPARHAEPQRWIARLPDFKISENKA 403

Query: 610 QAIVE---------------------FYQNPRNICAVEALLKEVSPSIGRHEKNVSS--- 645
           QA+ E                     +   P+N   +E L    +      E    S   
Sbjct: 404 QALWELAGKNIEGLQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGI 463

Query: 646 --EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
              +  K  V TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  GSKLEKA  
Sbjct: 464 NKAVAGKTFVLTGTLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANA 523

Query: 704 LGVKIMNEEQFLFLL 718
           LGV +++E + L LL
Sbjct: 524 LGVSVLSEAELLTLL 538


>gi|218459622|ref|ZP_03499713.1| NAD-dependent DNA ligase LigA [Rhizobium etli Kim 5]
          Length = 186

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 75/182 (41%), Positives = 117/182 (64%)

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596
            LY +IN+ R+I+L RFI++LGIRHVG   A+ LA+ Y +Y+ FA  +      + D W 
Sbjct: 3   KLYAAINEPRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMREAAPLSGDAWN 62

Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656
            L  +  +G+++A+A+VEFY+ P NI  +  LL EV+P          S +  K +VFTG
Sbjct: 63  DLNAIEGIGEVVARAMVEFYKEPLNIEVITRLLDEVTPQEAEQPVTAGSPVAGKTVVFTG 122

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+K  R +A+     LGA V+  +S+KTDI++ G   GSKL+KA++LGV+ M+E+++L 
Sbjct: 123 SLEKFTRDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLA 182

Query: 717 LL 718
           L+
Sbjct: 183 LI 184


>gi|255067693|ref|ZP_05319548.1| DNA ligase, NAD-dependent [Neisseria sicca ATCC 29256]
 gi|255048034|gb|EET43498.1| DNA ligase, NAD-dependent [Neisseria sicca ATCC 29256]
          Length = 543

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 157/564 (27%), Positives = 248/564 (43%), Gaps = 153/564 (27%)

Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347
           M+  R +LPY+IDG+V KV+  + Q++LG  +R+PRW I+HKF  ++A T +  ID+QIG
Sbjct: 1   MQQKRPSLPYEIDGMVVKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIG 60

Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407
           RTG +TPVARL+PV +GG  +TNATLHN+D +             +D+RVGD V+V+RAG
Sbjct: 61  RTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAG 109

Query: 408 EVIPKVVDIIVNERHPDA---------------------------------QPFSFPSFC 434
           +VIP+VV +I   R                                     +P+  P+ C
Sbjct: 110 DVIPEVVRVIFERRPMQETAVSNVSDGLKYQQDDLFAETPSTNQTQSVPLHKPYRLPTHC 169

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           PIC+S + R+         A  RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++  
Sbjct: 170 PICRSEIEREEGE------AVARCSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQL 223

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI-------------------------LG 529
              +     +R  AD++ L         +  +                            
Sbjct: 224 VAQD----LVRHFADLYRLDIPTLQKMKETADKVSSENENGDAETVSDDLSELNTQNGKK 279

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
                  N+   I   +   L RF+F+LGIRHVG   A++LA+ + S ++  +    I+A
Sbjct: 280 QPTKWAENILAGIEASKTPELTRFLFALGIRHVGERTAKTLAQAFGSLEHVRRAPEPILA 339

Query: 590 --------------------HNNDDWLSLIR--------------------------VPL 603
                                       L+                           +P 
Sbjct: 340 CLPDIGTVVARSIAHFFAQDAQQAMIDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPG 399

Query: 604 --VGDIIAQAIVE---------------------FYQNPRNICAVEALLKEVSPSIGRHE 640
             + +  AQA+ E                     +    +N   +E L    + +   ++
Sbjct: 400 FKISENKAQALWELAGKSIEGLQTDKALPADWQTWRSETQNAALLENLKTFFAQTSSENQ 459

Query: 641 KNV-----SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
           +       +  +  K  V TGTL  ++R +AQ  +   G  VS  +S+KTD ++ G+  G
Sbjct: 460 EATVSDDLNEAVAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAG 519

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SKLEKA  LGV +++EE+ L +L 
Sbjct: 520 SKLEKANALGVAVLSEEELLTMLD 543


>gi|213421996|ref|ZP_03355062.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 271

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 92/274 (33%), Positives = 146/274 (53%), Gaps = 8/274 (2%)

Query: 35  YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           Y+    P ILD+EYD L R    +    PDL     P+ P  ++G     +  ++ H +P
Sbjct: 2   YHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDSPTQRVGAAPLTAFNQIRHEVP 58

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+ +++ E    F  R+      K   ++ +  E K+DG  ++I YE G  V AA R
Sbjct: 59  MLSLDNVFDEESFLAFNKRVQDRL--KSTENVIWCCELKLDGLAVSILYENGVLVSAATR 116

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           GDG +GED+++ +R I  IP  L  +  P  +EVRGEV++ +  F  +N++    G K +
Sbjct: 117 GDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINEDARRTGGKVF 176

Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFAKGQYEMLQKMRCLGFPVNNG 271
           ANPRNAA+G LR+L+P     R L FF +G+G              L + +  G PV++ 
Sbjct: 177 ANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQFKAWGLPVSDR 236

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
           V   ++   ++ +Y+ ++  R TL +DIDG+V K
Sbjct: 237 VTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIK 270


>gi|51244858|ref|YP_064742.1| NAD-dependent DNA ligase [Desulfotalea psychrophila LSv54]
 gi|81642639|sp|Q6API9|DNLJ_DESPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|50875895|emb|CAG35735.1| related to NAD-dependent DNA ligase [Desulfotalea psychrophila
           LSv54]
          Length = 679

 Score =  243 bits (620), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 151/707 (21%), Positives = 262/707 (37%), Gaps = 106/707 (14%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYD-ALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
            L   +   +  Y +   P++ D  YD              P L           ++  E
Sbjct: 65  DLLSFLQAANALY-RAGYPLLSDEAYDFTFLTELRRRNPQHPYLL----------QVEAE 113

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK--DDNSIFFTLEPKIDGTMI 139
                  V   +  LS +K +++E +R++  RI +  Q+K  D  S+ F   PK+DG   
Sbjct: 114 PVQQGKTVELPMRMLSTDKAYDLESIRRWGRRIEKAAQEKGIDFTSLVFRGTPKLDGFAA 173

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
              Y+ G+      RGDG  G DVS        + R  S  +       GE+ ++K+ F 
Sbjct: 174 ---YDDGR--RLYTRGDGKKGTDVSRAFARGLQVSRGGSRGLGA-----GEIVVNKDYFT 223

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
               +        + N RN  + +++                  G           +   
Sbjct: 224 EHLAQ-------FFDNSRNFQASLIKEK----TLALPVVKAIEAGAAIFFPFSMLPDWRG 272

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
               L       V                + +   +PY+IDG+V+++ +  L++ +G   
Sbjct: 273 SWLELLQEFEEIV----------------EGLWQKVPYEIDGVVFEIIDEGLREVMGATR 316

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
              RW I+ K   + A   +L +  Q  R G + PVA +EP  + GALI   T H+   +
Sbjct: 317 HHHRWQIAFKKNTEIAEVTVLRVRPQTSRLGRVNPVAEVEPTRLSGALIQRVTAHHYAMV 376

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
           +            R I  G R+ + R+GEVIPK+ +++       A     P+ CP C S
Sbjct: 377 R-----------DRGIGPGARIRMSRSGEVIPKIEEVVKPVA---AAQLDIPAHCPSCGS 422

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            +  D +           C   ++C AQ    ++HF      N++G G   +   ++   
Sbjct: 423 DLAWDGD--------YLFCLNNMSCPAQITNSMEHFFKIL-GNVDGFGPSSVQRLYE--- 470

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI--SLERFIFSL 557
               +        L       +   E + GFG    TN+ + +N+ R       RF+ + 
Sbjct: 471 -GGLV-------DLPALYAMESADFEQV-GFGPKQATNMVEQLNRSREELIEDWRFLAAF 521

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           G+  +G      L +Y      F      I+A           +    +  A +I     
Sbjct: 522 GVHRLGMGNCEKLLRYVRLEDVFNLSEEQIVA----------EIKGFQEKTAHSICAGLA 571

Query: 618 NPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
                     L         +P +    +   S I  K +VFTG +    R   ++    
Sbjct: 572 --GIKDLFFQLFALGFKLEPTPLLAEGGQGEKSPISGKTIVFTGAMLAASRGDMEKQAKA 629

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           LGA V   ++ KTD+++ G   G +K+ KA+ LG+ I++EE +  L+
Sbjct: 630 LGATVGKSITGKTDMLVTGQRVGATKMAKAETLGIAILSEEAYRQLV 676


>gi|312878358|ref|ZP_07738269.1| DNA ligase (NAD(+)) [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794859|gb|EFR11277.1| DNA ligase (NAD(+)) [Caldicellulosiruptor lactoaceticus 6A]
          Length = 259

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 81/247 (32%), Positives = 124/247 (50%), Gaps = 8/247 (3%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
            +K +  L   I+YHD  YY    P I D EYD L R    +   +P+      P+ P  
Sbjct: 5   IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQ 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           ++GG++     +V H +P LSL  ++N  +L  F  R+         ++  + +E KIDG
Sbjct: 62  RVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLG---TSNFDYVVEYKIDG 118

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             + + YE G FV  A RGDG+ GEDV+  ++ I +IP  L  +I   I VRGEV++ K+
Sbjct: 119 LSVALEYENGLFVRGATRGDGNVGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMPKD 176

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
           +F+ LN E        +ANPRNAA+G LR+L+P    +          +  E   +   E
Sbjct: 177 EFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNVQWCEKRIETHAE 236

Query: 257 MLQKMRC 263
            L+  + 
Sbjct: 237 ALEFFKS 243


>gi|289751694|ref|ZP_06511072.1| LOW QUALITY PROTEIN: DNA ligase [NAD dependent] ligA [Mycobacterium
           tuberculosis T92]
 gi|289692281|gb|EFD59710.1| LOW QUALITY PROTEIN: DNA ligase [NAD dependent] ligA [Mycobacterium
           tuberculosis T92]
          Length = 409

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 119/427 (27%), Positives = 196/427 (45%), Gaps = 30/427 (7%)

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
            ++    +R  G PV+     A    G+    +     R  + ++IDG+V KVDE +LQ+
Sbjct: 1   MHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQR 60

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ +  ATL
Sbjct: 61  RLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATL 120

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
           HN   IK            + + +GD V++++AG+VIP+V+  +V  R    + F  P+ 
Sbjct: 121 HNASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTT 169

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
           CP C S +  +      +  A  RC     C  Q  ER+ H  SR+  +IE LG +    
Sbjct: 170 CPECGSPLAPE-----KEGDADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVA 224

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +++     I    ++F L  R    T       G    +   L  +++K +   L R 
Sbjct: 225 LLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRV 280

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           + +L IRHVG   AR+LA  + S    A                L  V  VG  IA A+ 
Sbjct: 281 LVALSIRHVGPTAARALATEFGSLDAIAAA----------STDQLAAVEGVGPTIAAAVT 330

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           E++    +   V+         +   +++V   +    +V TG+L    R  A+E +   
Sbjct: 331 EWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVAR 390

Query: 674 GAVVSAI 680
           G   +  
Sbjct: 391 GGKAAGS 397


>gi|215428469|ref|ZP_03426388.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T92]
          Length = 411

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 119/426 (27%), Positives = 196/426 (46%), Gaps = 30/426 (7%)

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           ++    +R  G PV+     A    G+    +     R  + ++IDG+V KVDE +LQ++
Sbjct: 3   HQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRR 62

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  +R+PRW I++K+  ++A T+LLDI + +GRTG +TP A + PV + G+ +  ATLH
Sbjct: 63  LGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLH 122

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   IK            + + +GD V++++AG+VIP+V+  +V  R    + F  P+ C
Sbjct: 123 NASEIKR-----------KGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTC 171

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           P C S +  +      +  A  RC     C  Q  ER+ H  SR+  +IE LG +     
Sbjct: 172 PECGSPLAPE-----KEGDADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVAL 226

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +++     I    ++F L  R    T       G    +   L  +++K +   L R +
Sbjct: 227 LQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVL 282

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +L IRHVG   AR+LA  + S    A                L  V  VG  IA A+ E
Sbjct: 283 VALSIRHVGPTAARALATEFGSLDAIAAA----------STDQLAAVEGVGPTIAAAVTE 332

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674
           ++    +   V+         +   +++V   +    +V TG+L    R  A+E +   G
Sbjct: 333 WFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARG 392

Query: 675 AVVSAI 680
              +  
Sbjct: 393 GKAAGS 398


>gi|303252068|ref|ZP_07338237.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302649050|gb|EFL79237.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 253

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 94/272 (34%), Positives = 147/272 (54%), Gaps = 21/272 (7%)

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
           +  A  RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++   + E     +  PAD+
Sbjct: 2   EGEAVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMECE----LVHTPADL 57

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
           F L        T +  +   G+ S  N  +SI K +N +L RF+F+LGIR VG   A++L
Sbjct: 58  FKL------DHTTLMRLERMGEKSAQNALNSIEKAKNTTLARFLFALGIRDVGEATAQNL 111

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
           A ++ +                  +  L  V  VG+++A  IV F+Q P N+  VE L+ 
Sbjct: 112 ANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVRFWQEPHNVAVVEDLIS 161

Query: 631 EVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
           +          +   + ++ K +V TGTL ++ R +A+  +   G  VS  +S KTD +I
Sbjct: 162 QGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSFGCKVSGSVSSKTDYLI 221

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
            G+  GSKL KAQ+LGVK++ E++F+ L  + 
Sbjct: 222 AGEKAGSKLAKAQELGVKVLTEQEFIALTGEN 253


>gi|313618396|gb|EFR90422.1| DNA ligase [Listeria innocua FSL S4-378]
          Length = 303

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 107/325 (32%), Positives = 162/325 (49%), Gaps = 32/325 (9%)

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           +K+AG++IP+V+  I  ER+   +PF  P  CP C S +VR           A RC    
Sbjct: 2   IKKAGDIIPEVIKSITEERNGSEKPFHMPKNCPTCDSELVRLEEE------VALRCINPK 55

Query: 463 ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT 522
            C AQ  E L HFVSR+A NI+GLG++ +   F        I+  AD+F L +       
Sbjct: 56  -CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS----MHLIKDVADLFFLSKE------ 104

Query: 523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582
           K+  +   G+ SVTNL  SI   +  SLE+ +F LGIRHVGA+ A+SLA ++ +  N   
Sbjct: 105 KLLELERMGEKSVTNLLASIEASKQNSLEKLLFGLGIRHVGAKAAKSLAVHFETMDNL-- 162

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK- 641
                      D  +L  +  +G+ +A +IV ++ N      +E L +          K 
Sbjct: 163 --------KIADKETLTSINDIGEKMADSIVTYFANEEVHDLLEELKRAGVNMTYTGPKL 214

Query: 642 ----NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697
                       K +V TG L+K+ R+ A+  +  LG  VS  +S+KTD+++ G + GSK
Sbjct: 215 ENMSEEELVFAGKTVVLTGKLEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSK 274

Query: 698 LEKAQQLGVKIMNEEQFLFLLQQYN 722
           L KA++L + I +EE  +  L    
Sbjct: 275 LAKAEELAIPIWSEEDLIEYLPDEG 299


>gi|166788183|emb|CAP40308.1| NAD-dependent DNA ligase [Candidatus Phytoplasma solani]
          Length = 333

 Score =  240 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 124/340 (36%), Positives = 184/340 (54%), Gaps = 12/340 (3%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A K++ SL + ++  +  YY  S P I D +YDAL +    +   +P       P  P  
Sbjct: 5   AIKKIKSLVKLLNEANYQYYNLSNPKINDQQYDALLKELIILETNYPQ---HRLPYSPTL 61

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           KIGG +        H+IP +SL+  +NIE+L+ F  RI +      + S     E KIDG
Sbjct: 62  KIGGFVEKKFKNFHHTIPMMSLDNAFNIEELKNFYDRIVKI-----NPSFSLLTELKIDG 116

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I ++Y+KG    A  RG+G  GED++  ++ I T+P  LS  I   IEVRGE+Y+S  
Sbjct: 117 VAINLKYKKGILTQALTRGNGILGEDITKNVQTIKTVPLKLSQPI--DIEVRGEIYLSYP 174

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGLGKTSEIFAKGQY 255
            F  LN +     + P+ANPRNAASG LR+LN      R L+ F++ +     I    Q 
Sbjct: 175 AFEKLNQKQKENNKTPFANPRNAASGTLRQLNSKIVAQRNLSIFIYNIASPYLIKP-TQL 233

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
             L+ +  LGF VN     A TF  ++      K I+ T PYD DG+V KV+E +L   +
Sbjct: 234 ASLEFLIQLGFTVNPHYNLALTFEDLLVKIQNYKVIKDTQPYDTDGVVIKVNELALHALI 293

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           G  +++P+W I++KF  K + + + DI  Q+GRTG++TP+
Sbjct: 294 GATSKAPKWAIAYKFPAKTSQSIVTDIIFQLGRTGMITPI 333


>gi|311977685|ref|YP_003986805.1| DNA ligase [Acanthamoeba polyphaga mimivirus]
 gi|82000023|sp|Q5UPZ0|DNLJ_MIMIV RecName: Full=DNA ligase; AltName: Full=NAD-dependent DNA ligase;
           AltName: Full=Polydeoxyribonucleotide synthase [NAD+]
 gi|55416925|gb|AAV50575.1| NAD-dependent DNA ligase [Acanthamoeba polyphaga mimivirus]
 gi|308204745|gb|ADO18546.1| DNA ligase [Acanthamoeba polyphaga mimivirus]
          Length = 636

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 117/695 (16%), Positives = 234/695 (33%), Gaps = 97/695 (13%)

Query: 32  DDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN-KIGGEMNLSLFKVT 90
            + Y+     +I D EYD L  R   +           +P+  +  ++G  +     KV 
Sbjct: 33  SEYYHNTGTSLISDQEYDILMDRLKEL-----------NPSSKIFAQVGAPV--KGKKVK 79

Query: 91  HSIPTLSLEKIW-NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
                 S+ KI  + + + K++           + S  + +  K+DG    +  +  K  
Sbjct: 80  LPFWMGSMNKIKADEKAVNKWLN----------EYSGPYVISDKLDGISCLLTIKNNK-T 128

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
               RGDG  G+D++  +  +  I   L   I + I +RGE+ +SK +F    +      
Sbjct: 129 KLYTRGDGTYGQDITHLLG-LINIDIGLLEEIDQDIAIRGELIMSKKNFEKYQE------ 181

Query: 210 RKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269
               AN RN   GI+     +    +    V  +              L+ ++  G  V 
Sbjct: 182 --IMANARNMVGGIVNSKPESVNKDHAA-DVDLIFYEVIKPNDKLSRQLKILKEWGLKVV 238

Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
                      +    + +   +    Y+IDG++   +   ++   G     P +  + K
Sbjct: 239 YYN--IYKTFDVNILESVLSERKKKSGYEIDGIIVTDNNKHVRNISGN----PSYSFAFK 292

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389
                  T +  +     + G+L P  + + V +    +   T  N  YI          
Sbjct: 293 GDTPTIDTVVKRVIWTPSKDGVLVPRIKFKKVRLSNVDLEYTTGFNAKYI---------- 342

Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449
                I  G  + V R+G+VIP +  ++   + PD     +          +    + +T
Sbjct: 343 -VDNKIGSGAIINVVRSGDVIPYITHVVKPAKKPDLPNIEYVWDKNGVNIILADINDNET 401

Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509
             +    +    +             V      I  +     + F               
Sbjct: 402 VIIKRLTKFMRNIGAENISEGITTRLVEAGFDTIPKIINMTEEDFL-------------- 447

Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569
                       T         +    NL +S++    ++L       G R  G +  + 
Sbjct: 448 ------------TIDGFQERLAEKIYNNLQNSLDNLDILTLMDASNIFG-RGFGTKKFKK 494

Query: 570 LAKYYLSYQN-FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
           +   Y +  N + +E +NI          L+ +     I      +F     N      +
Sbjct: 495 ILDVYPNIVNQYTKETDNIWRKK------LLDIEGFDTITVN---KFLGEMPNFQKFYKV 545

Query: 629 LKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           + + ++      E N     +N+ +VFTG     +    Q+++   G  VS  +S+ T +
Sbjct: 546 INKTITIKPYISEVNSEGIFQNQTVVFTG----FRNADWQKFIENEGGKVSGSVSKNTSL 601

Query: 688 IIV--GDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++   G+   +K +KA+QLG+K M +  F    ++
Sbjct: 602 LVYNDGEESSAKYQKAKQLGIKTMTKSSFSKKFEK 636


>gi|82701055|ref|YP_418155.1| putative NAD-dependent DNA ligase [Pseudomonas phage EL]
 gi|82657960|emb|CAG27216.1| putative NAD-dependent DNA ligase [Pseudomonas phage EL]
          Length = 656

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 158/710 (22%), Positives = 272/710 (38%), Gaps = 86/710 (12%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           +      + +  L ++++YH   Y+  ++  I D  YD L++  + +   +P++A   D 
Sbjct: 1   MGKHSPVERIKYLHEQLTYHAHLYFVENRNEISDEAYDVLEQELNELYDRYPEIAAKFDF 60

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
                 I      ++  V    P LSL+K  ++E+   F+         K  +   F  E
Sbjct: 61  YNRPVPIHEPSGETIQPVRFEEPMLSLKKALSVEEADTFL--------LKFPDGTNFFYE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACI--------RAIPTIPRVLSLNIPE 183
            K+DG  + + YE+G+ V  + RG G  GEDV+  I                       +
Sbjct: 113 EKLDGLALELVYEQGQLVSMSTRGSGLVGEDVTHSIVLFDEATLPRTLRTLPDRHKPQGD 172

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILR---RLNPTDITRYLNFFV 240
            + +RGE YIS   F +LN+          +NPRNA SG +R   +    DI   L F  
Sbjct: 173 RLVIRGEGYISLERFDSLNET-----GGKRSNPRNAVSGWVRSLPQNQREDIRGTLYFAA 227

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
           +         A  +   +      G P +      +                      +D
Sbjct: 228 YYASDRLGTKAYSELRQVLLGLGFGVPESRDWIAVSENRRGNIR-------------PVD 274

Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
           G+V KVD+F  Q   G  ++ P W I++KF  ++A  ++        R G + PV +  P
Sbjct: 275 GIVIKVDKFKEQDASGNGSKFPHWAIAYKFPAEEALAQVEGCIWNTSRFGRVVPVVQYTP 334

Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
           V I G +  +A+L N      L            + +GDR+++ R  +VIP++  +    
Sbjct: 335 VTIQGVICQSASLDNYGSFMDL-----------GLSIGDRIVITRNNDVIPRLNRVEE-- 381

Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
              +      P+ CP C S +   +   + +LV    C     C AQ + R      +  
Sbjct: 382 -CGEGDLLEAPTSCPSCDSLLEVVVGRDSSELV----CNNVAECPAQIVMRCVTTFDKFG 436

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +++GLG  ++    +       ++ PADI TL    +          G   V    +  
Sbjct: 437 LDVDGLGPVKVSELVEK----GWVKQPADILTLPEGIKDQCLTPTTRRGLERVLQEPVP- 491

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
                    L RF+ +LGI  +G  +A+ LA                I  +  +   L  
Sbjct: 492 ---------LHRFLKALGIPDIGITLAKRLANAIP---------EGKIEESLTNPKFLQS 533

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           V  V   IA  +V  + +P       AL   ++      + +        K+  TG +  
Sbjct: 534 VRGVSVGIAYRVVNAFDSPVFKDNFHALKGLLTLQYTGTQDDC------IKVCITGNI-G 586

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709
             R +      + G  +S  L++    +IVGD PG SKL  A + G+ ++
Sbjct: 587 PSRGELCNLFAKEGIELSDRLTQDCAFVIVGDRPGKSKLLIATESGIPML 636


>gi|4235382|gb|AAD13194.1| NAD-dependent DNA ligase [Thermus sp. SM32]
          Length = 481

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 174/483 (36%), Positives = 266/483 (55%), Gaps = 35/483 (7%)

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           +  +   DL+ F  R+ R   ++      +T+E K+DG  + + YE+G  V+ A RGDG 
Sbjct: 1   DNAFTHHDLKAFEDRVDRALGRE--GPFVYTVEHKVDGLSVNLYYEEGILVFGAPRGDGE 58

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
            GE+V+  +  IPTIPR L    PE +EVRGEVY+    FL LN+E+   G K + NPRN
Sbjct: 59  VGEEVTQNLLTIPTIPRRLKGV-PERLEVRGEVYMPIEAFLRLNEELEEAGEKVFKNPRN 117

Query: 219 AASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQAN 276
           AA+G LR+ +P     R L    + LG   E    K QYE L   +  GFPV +G  +A 
Sbjct: 118 AAAGSLRQKDPRITAKRGLRATFYALGLGLEESGLKTQYEFLLWFKEKGFPVEHGFARAT 177

Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336
              G+   Y      R  LP++ DG+V K+DE +L ++LG  AR+PR+ I++KF  ++  
Sbjct: 178 GAEGVERVYQGWLQKRRKLPFEADGVVVKLDELALWRELGYTARAPRFAIAYKFPAEEKE 237

Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396
           TRLLD+  Q+GRTG +TPV  LEPV I G+ ++  TLHNE YI+ L           DIR
Sbjct: 238 TRLLDVVFQVGRTGRVTPVGILEPVLIEGSEVSRVTLHNESYIEEL-----------DIR 286

Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456
           +GD VLV +AG VIP+V+ ++   R    +P  +P  CP C   +V++           H
Sbjct: 287 IGDWVLVHKAGGVIPEVLRVLKERRTGAERPIVWPENCPECGHHLVKE--------GKVH 338

Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516
           RC   L C A++ E ++H+ SR A +I+GLG++ ++   ++      ++  AD++ L++ 
Sbjct: 339 RCPNPL-CPAKRFEAIRHYASRKAMDIQGLGEKLIEKLLEN----GLVKDVADLYRLRKE 393

Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
                     +   G+ S  NL   I + ++  LER +++LG+  VG  +AR+LA  + +
Sbjct: 394 DLVG------LERMGEKSAENLLRQIEESKHRGLERLLYALGLPGVGEVLARNLAARFGT 447

Query: 577 YQN 579
              
Sbjct: 448 MDR 450


>gi|213865477|ref|ZP_03387596.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 423

 Score =  233 bits (594), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 175/450 (38%), Positives = 268/450 (59%), Gaps = 30/450 (6%)

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRG 189
           E K+DG  ++I YE G  V AA RGDG +GED+++ +R I  IP  L  +  P  +EVRG
Sbjct: 1   ELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRG 60

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TS 247
           EV++ +  F  +N++    G K +ANPRNAA+G LR+L+P     R L FF +G+G    
Sbjct: 61  EVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEG 120

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                     L + +  G PV++ V   ++   ++ +Y+ ++  R TL +DIDG+V KV+
Sbjct: 121 GELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVN 180

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
             +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L
Sbjct: 181 SLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVL 240

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++NATLHN D I+ L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P
Sbjct: 241 VSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRP 289

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487
             FP+ CP+C S V R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G
Sbjct: 290 IVFPTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRWAMDVDGMG 343

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
            + +D   + E     +  PAD+F L         K+  +   G  S  N+ +++ K + 
Sbjct: 344 DKIIDQLVERE----YVHTPADLFRLTA------GKLTGLDRMGPKSAQNVVNALEKAKA 393

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
            +  RF+++LGIR VG   A  LA Y+ + 
Sbjct: 394 TTFARFLYALGIREVGEATAAGLAAYFGTL 423


>gi|82913524|ref|XP_728678.1| NAD-dependent DNA ligase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485151|gb|EAA20243.1| DNA ligase, NAD-dependent, putative [Plasmodium yoelii yoelii]
          Length = 354

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 54/161 (33%), Positives = 87/161 (54%), Gaps = 6/161 (3%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +  ++   L +EI +H+  YY+   P+I D+EYD L     AI   +P+L     P+ 
Sbjct: 184 PAEVVEKARKLREEIEFHNVRYYRLDDPLITDAEYDRLMAELLAIEARYPELV---TPDS 240

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  +V H +P LSLE  ++ EDL  F  R+ +   +   +++ +  EPK
Sbjct: 241 PTQRVGAPPVEAFTEVRHEVPMLSLENAFSEEDLTAFDRRVRKELSR---DTLEYVAEPK 297

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
           +DG  + + Y+ G  V AA RGDG  GEDV+  +RA+  IP
Sbjct: 298 LDGLAVNLLYQDGVLVRAATRGDGEVGEDVTHNVRAVRAIP 338


>gi|325989607|ref|YP_004249306.1| DNA ligase [Mycoplasma suis KI3806]
 gi|323574692|emb|CBZ40348.1| DNA ligase [Mycoplasma suis]
          Length = 590

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 163/619 (26%), Positives = 278/619 (44%), Gaps = 66/619 (10%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG--GEMNLSLFKVT 90
           + YY    P + D  YD   ++  A+             +    ++G     +    K  
Sbjct: 18  EKYY-KGVPDLPDDVYDFKLKKLRAL-----------GGDIEQTQVGHVYSESKKFKK-E 64

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIFFTLEPKIDGTMITIRYEKGKF 148
           H  P LSL   +N E+L  F   I +  ++ +    +  F +EPKIDG  I+++Y+KG+ 
Sbjct: 65  HLEPMLSLNNAFNQEELCLFFDSIEKTLKQNNRPYKNNEFFVEPKIDGMSISLQYKKGEL 124

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVL--SLNIPEIIEVRGEVYISKNDFLALNDEMI 206
           + A  RGDG  GED+   I  I +IP+ +    + PE I VRGE++I K+DF  + +E  
Sbjct: 125 IEALSRGDGIKGEDLFEPILRINSIPKKIKLPESFPEEILVRGEIFILKSDFKKIQEESS 184

Query: 207 AVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT---SEIFAKGQYEMLQKMR 262
               K ++N RN  +G LR  +   I  + L+F  + +       E   K Q +M++ + 
Sbjct: 185 EKRIKTFSNARNFVAGTLRLKDFEQISDKKLSFIAYRIIPVSKEQEFPVKTQEQMIRTLE 244

Query: 263 CLGF--PVNNGVRQANTFHGIVSYYNEMKSI----RSTLPYDIDGLVYKVDEFSLQKQLG 316
            LGF  P     +        +  + +        +  +    DGLV K++     + +G
Sbjct: 245 ELGFTTPPKEYSKTIIGNRANLDIFLDFIGQFGEVKDEIDIPNDGLVIKLNSLEDHEIIG 304

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W I++K+      T+LL I++++GR+G +T + +LEP+ + G+ I   +LHN 
Sbjct: 305 STAKFPKWAIAYKYPSLVKKTKLLKIELKVGRSGRITYIGKLEPIELKGSQIECVSLHNF 364

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D IK L           D+R G  V V ++GEVIP+++    N   P   P+  P+ CP 
Sbjct: 365 DNIKKL-----------DLREGSIVEVCKSGEVIPQIIFAESNSELP---PYELPTECPS 410

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +V     K        +      C  Q++ ++ +F S+ A NIEGL +  ++    
Sbjct: 411 CSSTLVFGEGDK-------LQYCRNKDCWEQKISKIVYFCSQQAVNIEGLSRGIIEKLVN 463

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +    DI++L+ ++Q   +  +      +     L  SI + +  S ++ +  
Sbjct: 464 K----GFLTNILDIYSLKEKEQEIYSSKDLK--IKEKLFKKLVTSIEESKKASPQKILIG 517

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G E A+ L K + S +             N D  S + VP VG     A+  + 
Sbjct: 518 LGIDHIGGEAAKLLLKKFSSLEELF----------NSDLESKLNVPKVGPKSGYALENWL 567

Query: 617 QNPRNICAVEALLKEVSPS 635
           ++  N   VE L       
Sbjct: 568 KDEDNKKLVEGLKNLGFNF 586


>gi|281414409|ref|ZP_06246151.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
          Length = 248

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 87/241 (36%), Positives = 128/241 (53%), Gaps = 6/241 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
              + +     R+E   L + +      YYQ   P I D+EYDAL RR + +    P+L 
Sbjct: 11  PDPQDIPAADLREEYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLEDLEALHPELV 70

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-KDDNS 125
                + P  ++GGE++ +   V H     SLE ++++E+L  +  R  +   + +   +
Sbjct: 71  ---SNDSPTQEVGGEVSEAFAPVRHGARMYSLEDVFSVEELEVWFRRAAQALTQVRPGVA 127

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184
             + +E KIDG  + +RY  G+ V AA RGDG +GEDV+A +R I  IP  LS    P  
Sbjct: 128 PRWLVEVKIDGLAVALRYRDGRLVQAATRGDGVTGEDVTANVRTIGDIPHELSGEGWPAE 187

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243
            EVRGEV++S   F  LN      G+ P+ANPRNAA+G LR+ +P     R L  FVHG+
Sbjct: 188 FEVRGEVFMSSAAFAELNARRAEEGQPPFANPRNAAAGALRQKDPAVTAQRPLAMFVHGI 247

Query: 244 G 244
           G
Sbjct: 248 G 248


>gi|325973164|ref|YP_004250228.1| DNA ligase [Mycoplasma suis str. Illinois]
 gi|323651766|gb|ADX97848.1| DNA ligase [Mycoplasma suis str. Illinois]
          Length = 590

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 163/619 (26%), Positives = 278/619 (44%), Gaps = 66/619 (10%)

Query: 33  DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG--GEMNLSLFKVT 90
           + YY    P + D  YD   ++  A+             +    ++G     +    K  
Sbjct: 18  EKYY-KGVPDLPDDVYDFKLKKLRAL-----------GGDIEQTQVGHVYSESKKFKK-E 64

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIFFTLEPKIDGTMITIRYEKGKF 148
           H  P LSL   +N E+L  F   I +  ++ +    +  F +EPKIDG  I+++Y+KG+ 
Sbjct: 65  HLEPMLSLNNAFNQEELCLFFDSIEKTLKQNNRPYKNNEFFVEPKIDGMSISLQYKKGEL 124

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVL--SLNIPEIIEVRGEVYISKNDFLALNDEMI 206
           + A  RGDG  GED+   I  I +IP+ +    + PE I VRGE++I K+DF  + +E  
Sbjct: 125 IEALSRGDGIKGEDLFEPILRINSIPKKIKLPESFPEEILVRGEIFILKSDFKKIQEESS 184

Query: 207 AVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT---SEIFAKGQYEMLQKMR 262
               K ++N RN  +G LR  +   I  + L+F  + +       E   K Q +M++ + 
Sbjct: 185 EKRIKTFSNARNFVAGTLRLKDFEQISDKKLSFIAYRIIPVSKEQEFPVKTQEQMIRTLE 244

Query: 263 CLGF--PVNNGVRQANTFHGIVSYYNEMKSI----RSTLPYDIDGLVYKVDEFSLQKQLG 316
            LGF  P     +        +  + +        +  +    DGLV K++     + +G
Sbjct: 245 ELGFTTPPKEYSKTIIGNRANLDIFLDFIGQFGEVKDEIDIPNDGLVIKLNSLEDHEIIG 304

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             A+ P+W I++K+      T+LL I++++GR+G +T + +LEP+ + G+ I   +LHN 
Sbjct: 305 STAKFPKWAIAYKYPSLVKKTKLLKIELKVGRSGRITYIGKLEPIELKGSQIECVSLHNF 364

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           D IK L           D+R G  V V ++GEVIP+++    N   P   P+  P+ CP 
Sbjct: 365 DNIKKL-----------DLREGSIVEVCKSGEVIPQIIFAESNSELP---PYELPTECPS 410

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S +V     K        +      C  Q++ ++ +F S+ A NIEGL +  ++    
Sbjct: 411 CSSTLVFGGGDK-------LQYCRNKDCWEQKISKIVYFCSQQAVNIEGLSRGIIEKLVN 463

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +    DI++L+ ++Q   +  +      +     L  SI + +  S ++ +  
Sbjct: 464 K----GFLTNILDIYSLKEKEQEIYSSKDLK--IKEKLFKKLVTSIEESKKASPQKILIG 517

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI H+G E A+ L K + S +             N D  S + VP VG     A+  + 
Sbjct: 518 LGIDHIGGEAAKLLLKKFSSLEELF----------NSDLESKLNVPKVGPKSGYALENWL 567

Query: 617 QNPRNICAVEALLKEVSPS 635
           ++  N   VE L       
Sbjct: 568 KDEDNKKLVEGLKNLGFNF 586


>gi|291545735|emb|CBL18843.1| pseudouridine synthase family [Ruminococcus sp. SR1/5]
          Length = 610

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 116/456 (25%), Positives = 186/456 (40%), Gaps = 38/456 (8%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
             K++  L +++      YYQ  + I+ + EYDAL     A+             + P  
Sbjct: 166 IHKKMKELGEKLREASRAYYQEDREIMSNVEYDALYDTLSALEKE----TGIVLADSPTV 221

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
            +G E    L K  H  P LSL+K    E LR+FI                  L  K+DG
Sbjct: 222 NVGYEAVEQLPKEEHERPMLSLDKTKEREALREFI------------GEHPTLLSWKLDG 269

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I + YE G+ + A  RG+G  GE ++   R    IP  L ++    + +RGE  I+ +
Sbjct: 270 LTIVLTYENGELIKAVTRGNGIVGEVITNNARVFKNIP--LKISFKGRLVLRGEAIITYS 327

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255
           DF  +N+  I      Y NPRN  SG +R+LN      R + F+   L     +  +   
Sbjct: 328 DFEKINET-IGDADAKYKNPRNLCSGSVRQLNNEITAKRNVRFYAFSLVSAEGVDFRNSR 386

Query: 256 EMLQKM-RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
           E+  +     GF V    +            +      +T  +  DGLV   D+ +  + 
Sbjct: 387 EVQFRWLNEQGFEVVEYRKVTAETLD--EAMDYFAEAVTTNDFPSDGLVALYDDIAYGES 444

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
           LG  A+ PR  ++ K+A++   TRLL+I+    RTG++ PVA  EPV + G  ++ A++H
Sbjct: 445 LGTTAKFPRNAMAFKWADEMRDTRLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVH 504

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
           N   +K L            + +GD + V +A  +IP++ + +              +  
Sbjct: 505 NISIMKEL-----------KLGIGDTIRVYKANMIIPQIAENL----TGSGNAPIPHTCP 549

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470
              Q  VV+  N           C      S     
Sbjct: 550 ACGQETVVKKENDVECLFCVNPGCPAKKIKSFGLFY 585


>gi|48374262|gb|AAT41954.1| putative DNA ligase [Fremyella diplosiphon Fd33]
          Length = 268

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 139/294 (47%), Gaps = 31/294 (10%)

Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
            PS CP+C   VVR+L        A  RC    +C+A     ++H+VSRDA +I+G+G++
Sbjct: 1   MPSNCPVCGQPVVRELGE------AVTRCVNA-SCAAILKGAIEHWVSRDALDIKGMGEK 53

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
            +            +   AD++ L   +         +   G  S   L D+I + +N  
Sbjct: 54  LVHQLVDK----GLVHSVADLYDLTEEKLY------VLERMGQKSAQKLIDAIAQSKNQP 103

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             R ++ LGIRHVG+  A+ L + +   +   Q   +           +  +  +G  IA
Sbjct: 104 WSRVLYGLGIRHVGSVNAQLLTEKFSDVEKITQARQS----------DIAGIYGIGVEIA 153

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSE-IENKKLVFTGTLQKIQRHK 665
           +++ +++Q   N   +  L           E +    S+    +K  V TGTL  ++R +
Sbjct: 154 ESVHQWFQIHANQTLISRLQAAGLQLANSAETSTITDSNPQFTDKTFVVTGTLPTLKRDE 213

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           A+  + + G  V+  +S+KTD ++VG++ GSKL KA+ LG+  + E Q L +L+
Sbjct: 214 AKALIQKAGGKVTDSVSKKTDYLVVGEDAGSKLAKAEALGITQLTEAQLLQMLE 267


>gi|118602318|ref|YP_903533.1| DNA ligase (NAD(+)) [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|166216237|sp|A1AVV5|DNLJ_RUTMC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118567257|gb|ABL02062.1| DNA ligase (NAD(+)) [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 614

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 147/720 (20%), Positives = 280/720 (38%), Gaps = 116/720 (16%)

Query: 9   IEALSIEQARK--ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           ++ LS E+  +  ++++L           Y+  KPII D +YD +    DA+        
Sbjct: 1   MDELSDEELAQFCQIANLA----------YRAGKPIISDQDYDFIY--LDAL-------- 40

Query: 67  RSEDPNGPLNKIGGEMNLSL--FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK--KD 122
           ++ DP+  L K       S    KV      LS++K ++ +++ K+I R+ +   +   D
Sbjct: 41  KNRDPDNLLFKFIETEGQSFSEEKVLLPEAMLSIDKAYSWDEISKWIKRLEKSAMQISLD 100

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
            ++I     PK+DG      ++ G       RGDG  G D+S        +      N  
Sbjct: 101 LSAIQIKATPKLDGFSG---FDDG--SRLYTRGDGKKGSDISRVFERGLCV-----FNDA 150

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHG 242
           E     GE+ I K+ F              +  PRN  + +++     +  +        
Sbjct: 151 ERGLGAGEIVIKKSYFKKYLAH-------SFEYPRNFQASLIKEKALDEQAQKAIIDKAA 203

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
           L             + + +      V   +                        +D+DG+
Sbjct: 204 LFIPFIKLPTWSGLVAELVAKFDQIVAQVLVMV--------------------DFDVDGV 243

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V++     L+ Q+G   +  RW I+ K  + +A  ++L++  Q+GR+G +TPV  LEP  
Sbjct: 244 VFEAINTDLKTQMGANRKFHRWQIAFKENKDKAHVKVLNVIPQVGRSGKITPVVELEPTL 303

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           + GA I  AT HN   +K            + + VG  V + R+G VIPK++ ++     
Sbjct: 304 LSGATIMRATGHNYGLVK-----------EQGLGVGSVVELTRSGLVIPKIIFVLKP--- 349

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
               P   P  CP C   +V   +           C     C AQ + ++ +F    A N
Sbjct: 350 ---MPVDIPDNCPSCDKPLVWKSD--------FLTCINHKNCPAQIIGKMAYFFKILANN 398

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
            +G G   ++  +  +     IR  + I+ L      +        G           + 
Sbjct: 399 -DGFGIATIEKLYAHD-----IRSVSQIYALNIEDLVTIGF-----GEKTSMNLINQLNR 447

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           +    +   RF+ + G+  +G     +L K            +++    + +   +  + 
Sbjct: 448 SVSEQVEDWRFLAAFGMHRMGLGNCENLLK-----------SHHLNDIFDLNLKEIANID 496

Query: 603 LVGDIIAQAIVEFY---QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659
              ++  Q IV+      +  N    +      +  + +  + ++ E+ +KK+VFTG + 
Sbjct: 497 GFAELTGQIIVQGLISIADEFN-HIYQYGFNLETTILTKDLQTLTHELFDKKIVFTGKMN 555

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
              R   +++   +G  VS  +S K D +++GD  G  K++ A++ GV +M E  +L  +
Sbjct: 556 H-SRDDMKKHAKSIGIKVSTSISAKIDYLVIGDKVGQKKIKDAEKFGVVVMTETDYLSKI 614


>gi|257793288|ref|ZP_05642267.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9781]
 gi|257787260|gb|EEV25600.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9781]
          Length = 245

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 83/254 (32%), Positives = 128/254 (50%), Gaps = 11/254 (4%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +      ++ L   ++ +   YY    P + DSEYD L      I    P+       + 
Sbjct: 1   MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTV---DS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GGE   S  KV H  P LSL   +N +DLRKF  RI          ++ +  E K
Sbjct: 58  PTVRVGGEAQASFKKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIG-----NVGYMCELK 112

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           IDG  ++++Y  G FV    RGDG +GED++  ++ I  IP  +   +   +EVRGE Y+
Sbjct: 113 IDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLN--VEVRGEAYM 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
            +  FL LN+E      + +ANPRNAA+G LR+L+      R L+ F++ +   ++  A+
Sbjct: 171 PRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230

Query: 253 GQYEMLQKMRCLGF 266
            Q E L ++  LGF
Sbjct: 231 SQSEALDELDKLGF 244


>gi|261884935|ref|ZP_06008974.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 195

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 82/189 (43%), Positives = 114/189 (60%), Gaps = 4/189 (2%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           I +E L+  +A  EL  L + I++HD+ Y+   +P I D+ YDALKRR +AI   FP L 
Sbjct: 4   ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63

Query: 67  RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           R    + P  ++G      +   V H+ P LSL+  ++ ED+R F+  +YRF  +  D+S
Sbjct: 64  RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           I FT EPKIDG  ++IRYE G  V  A RGDG +GE+V+A IR I  IP  L    P ++
Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180

Query: 186 EVRGEVYIS 194
           EVRGEVY+ 
Sbjct: 181 EVRGEVYMH 189


>gi|317968248|ref|ZP_07969638.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CB0205]
          Length = 239

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 76/234 (32%), Positives = 114/234 (48%), Gaps = 5/234 (2%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +   S L   ++     YY    P++ D  YD L R    + +A   L      + P  +
Sbjct: 9   QARASELRDLLNRAAHAYYVLDAPVMEDPVYDRLYRELLDLENADASLI---SADSPTQR 65

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +GG        V H I  LSL+  +N ++L  +  R+ +   ++   ++    E KIDG 
Sbjct: 66  VGGAPAAGFSSVRHRIGLLSLDNAFNTDELEAWYGRLLKVLDREAGTALPMVGELKIDGN 125

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKN 196
            + + YE G  V AA RGDG  GE+++A +R I ++P  L   N P  +EVRGE  I   
Sbjct: 126 ALALSYENGVLVRAATRGDGEQGEEITANVRTIASVPLRLQLENPPAWLEVRGEALIPDG 185

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249
            F A+N E  A G   +ANPRNA +G LR+L+P     R L+FF + L   +  
Sbjct: 186 TFAAINSERQARGEALFANPRNACAGTLRQLDPKVVAARKLDFFAYTLHLPAHW 239


>gi|299145804|ref|ZP_07038872.1| putative BRCA1 C Terminus (BRCT) domain protein [Bacteroides sp.
           3_1_23]
 gi|298516295|gb|EFI40176.1| putative BRCA1 C Terminus (BRCT) domain protein [Bacteroides sp.
           3_1_23]
          Length = 652

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 132/712 (18%), Positives = 258/712 (36%), Gaps = 89/712 (12%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L   I  H++ Y +   P I D+EYDA       +     +  +  +P            
Sbjct: 13  LLDMIKRHNNMY-RMGTPEISDAEYDAEIELLKTLDPDN-EWFKHTEP---------AFV 61

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               K    IP  SL K+ +I +L+K+          K +  +     PK+DG  +    
Sbjct: 62  PETRKRALPIPMKSLNKVKDISELKKWY----MSLGLKGNAGV--ICMPKLDGLSLLYNE 115

Query: 144 EKGKFVYAALRGD-GHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
             G+      RG   + G+D ++                       GE  I+++D+    
Sbjct: 116 LTGE---TYSRGGIENEGQDCTSHY----RASIQCYNPASCFHYTFGEFVINRSDWEQHF 168

Query: 203 D-EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
             +        + +PRN A+G+L R  P D   + +FF +G+ ++S       + +++ +
Sbjct: 169 HGKRSKFTGDIFKSPRNTAAGLLNRDEPCDYLEHASFFRYGVDESSLHDYNNFHSLIETI 228

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR- 320
             +    +           +            +  Y IDG+V  +D+  L + +G     
Sbjct: 229 CNIYQQEHLYH--FAFIDELNEELLMNLFKEWSKVYPIDGIVIYIDDLRLWEVIGRHQTS 286

Query: 321 -SPRWMISHKFAEKQ--ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +P + I++K  +      T + DI  ++ ++G L PV  +E V+ G   + N T +N  
Sbjct: 287 GNPLYAIAYKHPDFTESFETTVKDIVWKVSKSGALKPVVNIEMVDTGDCNMENPTGYNAG 346

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFCPI 436
           +I              +I  G  +LV R+G VIPK++  +      +  + +   S CP 
Sbjct: 347 WI-----------NDHEIAKGAEILVTRSGGVIPKILSTLTPATQEEQEKLWDEMSECPH 395

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S  + + N           C   L+C   QL ++  F        E +G++ L   F 
Sbjct: 396 CGSPTMWNENHIE-------LCCTNLSCPGVQLAKIIFFY--LTCGAENMGEETLSKIFN 446

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +   +    +      L + +    +  + IL      +  +                  
Sbjct: 447 AGFTSIPAILNITFNDLIKIEGFGDSISKIILENNRKIMQGV-----------------D 489

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           L      ++  + + K         +    +   +++D  S  +   +         +F 
Sbjct: 490 LATLMQASDCFKGIGK--------IKAQKILDEMDDEDLCSFCQGWYINHEPDVQSEDFK 541

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ------RHK-AQEY 669
             P  +  +  LL          E  +  ++  K +V  G  + +       R    +E 
Sbjct: 542 NCPITVQNL--LLGYFPFMAFLEETKIPYKLSPKTVVLEGKCKGLSICVSGFRDSNLEEV 599

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +T  G  + + +S+KT  ++V D     SK+ KA+ LG+ I++ E+F     
Sbjct: 600 ITNEGGKIVSGVSKKTTHLVVKDKSANSSKISKAKLLGIPILSIEEFCDFFN 651


>gi|332141273|ref|YP_004427011.1| NAD-dependent DNA ligase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551295|gb|AEA98013.1| NAD-dependent DNA ligase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 171

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 60/167 (35%), Positives = 95/167 (56%), Gaps = 5/167 (2%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           ++EQARK+++ L   ++ ++  YY    P I D+ YD   +   A+   +P L   + PN
Sbjct: 4   TLEQARKKVAELRNTLNEYNYQYYVLDDPSIPDAVYDRDMQSLIALEKQYPSL---QSPN 60

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P  K+GGE   +  +VTH +P LSL+  ++ E L  F  R+      KD +S+ F+ EP
Sbjct: 61  SPSQKVGGEALSAFEQVTHDVPMLSLDNAFDEESLLAFEKRLKDRL--KDTSSLHFSCEP 118

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
           K+DG  ++I YE G+ V AA RGDG  GE+++A +R I  +P   + 
Sbjct: 119 KLDGLAVSILYENGELVRAATRGDGQVGENITANVRTISNVPLCCAE 165


>gi|265763497|ref|ZP_06092065.1| NAD-dependent DNA ligase [Bacteroides sp. 2_1_16]
 gi|263256105|gb|EEZ27451.1| NAD-dependent DNA ligase [Bacteroides sp. 2_1_16]
          Length = 652

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 132/712 (18%), Positives = 253/712 (35%), Gaps = 89/712 (12%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L   I  H+  Y +   P I D+EYDA       +     +  +  +P            
Sbjct: 13  LLDMIKRHNKMY-RMGAPEISDAEYDAEIELLKTLDPDN-EWFKHTEP---------AFV 61

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               K    IP  SL K+ +I +L+K+          K +  +     PK+DG  +    
Sbjct: 62  SETRKRALPIPMKSLNKVKDISELKKWY----MSLGLKGNAGV--VCMPKLDGLSLLYNE 115

Query: 144 EKGKFVYAALRGD-GHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
             G+   A  RG   + G+D +                        GE  I+++D+    
Sbjct: 116 LTGE---AYSRGGIENEGQDCTNHY----QASTQCYNPASSFHYTFGEFVINRSDWEQHF 168

Query: 203 D-EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
             +        + +PRN A+G+L R  P D   + +FF +G+ ++S       + +++ +
Sbjct: 169 HGKRSKFTGDIFKSPRNTAAGLLNRDEPCDYLEHASFFRYGVDESSLHDYNNFHSLIETI 228

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR- 320
             +    +           +            +  Y IDG+V  VD+  L + +G     
Sbjct: 229 CNIYQQEHLYH--FAFIDELNEELLMNLFKEWSKIYPIDGIVIYVDDLRLWEVIGRHQTS 286

Query: 321 -SPRWMISHKFAEKQ--ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +P + I++K  +      T +  I  ++ ++G L PV  +E V+ G   + N T +N  
Sbjct: 287 GNPLYAIAYKHPDFTESFETTVKGIVWKVSKSGALKPVVNIEMVDTGDCNMENPTGYNAG 346

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFCPI 436
           +I              +I  G  +LV R+G VIPK++  +      +  + +   S CP 
Sbjct: 347 WI-----------NDHEIAKGAEILVTRSGGVIPKILSTLSPATQEEQEKLWDEMSECPH 395

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
           C S  + + N           C    +C   QL ++  F        E +G++ L   F 
Sbjct: 396 CGSSTMWNENHIE-------LCCTNPSCPGVQLAKIIFFY--LTCGAENMGEETLSKIFN 446

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +   +    +      L + +    +    IL      +  +                  
Sbjct: 447 AGFTSIPAILNVTFNDLIKIEGFGDSISNIILENNRKIMQGV-----------------D 489

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           L      ++  + + K         +    +   +++D  S  +   +         +F 
Sbjct: 490 LATLMQASDCFKGIGK--------IKAQKILDEMDDEDLCSFCQGWYINHEPDVQSEDFK 541

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ------RHK-AQEY 669
             P  +  +  LL          E  +  ++  K  V  G  + +       R    +E 
Sbjct: 542 NCPITVQNL--LLGYFPFMAFLEETKIPYKLSPKTAVLEGKCKGLSICVSGFRDSNLEEV 599

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQ 719
           +T  G  + + +S+KT  ++V D     SK+ KA+ LG+ I++ E+F     
Sbjct: 600 ITNEGGKIVSGVSKKTTHLVVKDKSANSSKISKAKLLGIPILSIEEFCDFFN 651


>gi|218678540|ref|ZP_03526437.1| NAD-dependent DNA ligase LigA [Rhizobium etli CIAT 894]
          Length = 274

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 130/274 (47%), Positives = 188/274 (68%)

Query: 399 DRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           D V+V+RAG+VIP+++D+++ +R  +A  + FP  CP+C S  VR++N KTGK+ +  RC
Sbjct: 1   DTVIVQRAGDVIPQILDVVMEKRTAEAGSYEFPRTCPVCGSHAVREVNEKTGKMDSVRRC 60

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
           TGG  C AQ  E LKHFVSR+AF+IEGLG +Q+DFFF++EDP+  IR   DIFTL++RQQ
Sbjct: 61  TGGFICRAQATEHLKHFVSRNAFDIEGLGSKQIDFFFENEDPSLQIRTAPDIFTLEKRQQ 120

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578
            S TK+ENI GFG VSV  LY +IN+RR+I+L RFI++LGIRHVG   A+ LA+ Y +Y+
Sbjct: 121 QSLTKLENIDGFGKVSVGKLYAAINERRSIALHRFIYALGIRHVGETTAKLLARSYNTYE 180

Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638
            FA  +      + + W  L  +  +G+++A+A+VEFY+ PRNI  +  L+ EV+P+   
Sbjct: 181 AFATAMKEAAPLSGEAWNDLNAIEGIGEVVARAMVEFYKEPRNIEVINRLIGEVTPAEAE 240

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
                 S +  K +VFTG+L+K  R +A+     
Sbjct: 241 QPVTTGSPVAGKTVVFTGSLEKFTRDEAKARAES 274


>gi|257439787|ref|ZP_05615542.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165]
 gi|257197807|gb|EEU96091.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165]
          Length = 209

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 74/216 (34%), Positives = 103/216 (47%), Gaps = 9/216 (4%)

Query: 12  LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
           + +EQARK    L   I  ++  YY    P + D EYDAL R   A+   FP L  +   
Sbjct: 1   MELEQARKRAEELRVIIERNNRLYYDQDAPELEDFEYDALTRELKALEAEFPQLVTA--- 57

Query: 72  NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
           N P  K+GG  +    KVTH++   SL   ++ ++LR F  R+             + +E
Sbjct: 58  NSPTQKVGGTPSGRFAKVTHAVKMESLLDAFSFDELRDFDRRVRE-----AGIEPEYVVE 112

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
            KIDG   ++ YE G  V A+ RGDG  GEDV+A ++AI  IP+ L    PE +EVRGEV
Sbjct: 113 IKIDGLSCSLEYENGVLVRASTRGDGVVGEDVTANVKAIKRIPKTLKNA-PEYLEVRGEV 171

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL 227
           Y+  + F  L  E    G  P          +    
Sbjct: 172 YMPHDAFQHLCAEQELQGAAPLQKSAQCCRRVSASE 207


>gi|310831452|ref|YP_003970095.1| putative NAD-dependent DNA ligase [Cafeteria roenbergensis virus
           BV-PW1]
 gi|309386636|gb|ADO67496.1| putative NAD-dependent DNA ligase [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 651

 Score =  223 bits (568), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 128/722 (17%), Positives = 263/722 (36%), Gaps = 117/722 (16%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           ++  LE+ +      YY  S PI+ D ++D L    D +    P        +  L ++G
Sbjct: 22  KIKELEKLLEQASKSYYNTSNPILTDDQFDIL---LDFLNKRNP-------KSTFLKQVG 71

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIE-DLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
             +     KV       S++KI      L K++ +           S  + L  K+DG  
Sbjct: 72  APIKN---KVELDYYLGSMDKIKPPSTKLEKWLKK----------YSAPYYLSDKLDGIS 118

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---------IPEIIEVRG 189
             + Y+  K +    RG    G D++  I+ +      +               +I +RG
Sbjct: 119 GLVVYQNNK-IKLFTRGTATEGMDITTLIKYLNLPSYNVVETKLKKLGLKGHKNLIALRG 177

Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248
           E+ +SK++F   N          + N RN  +G++   +    +++ L+F ++ +     
Sbjct: 178 EIIMSKSNFSKHNK--------EFKNARNLVAGLVNSKHKKPSLSQDLDFVLYQVVDPVI 229

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            F     E +  ++ LGF      +              +K  ++   Y++DG++   ++
Sbjct: 230 TFV----EQMDLIKELGFKNVYYQK--EKELNYNVLSQILKQRKNNSDYEVDGIIVTNNK 283

Query: 309 FSLQKQLGERARSPRWMISHKF--AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
                      ++P +  + K    E    + +  ++  I ++G + P   + PV + G 
Sbjct: 284 LHKL----NIGKNPEFAFAFKELVEETFKESTVKHVEWNISKSGKIMPTVVILPVEMEGV 339

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++  T  N  Y+K              +  G ++ + R+G+VIP +V +I         
Sbjct: 340 TVSRVTAFNAKYVK-----------ENGLGPGSKIQITRSGDVIPYIVKVIKKV------ 382

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
                       S     ++ K        R          +                  
Sbjct: 383 ------------SPEFPKIDYKWTDSGVDIRTLDQSDEQQIRQIYFFFKTLDTK------ 424

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
                    +            +  T+++  +        + G  D S TN Y+ + + +
Sbjct: 425 ---------RFGLKLIVKMFENNFNTIEKILKMDKDDFIKLDGVKDKSATNFYNELQRIK 475

Query: 547 NISLERFIFSLGIR----HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           + +       L       + G++ A+ +   Y     F + I       N+  L    +P
Sbjct: 476 STNFPLEKLILATNSLGDNFGSKKAKLIFDNYPDI--FNKNIIKNEKIKNEWILKFKNIP 533

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKI 661
            +    A+ I+   +       ++ L K  + +I +  K VS++ ++  K V TG     
Sbjct: 534 GIEQKTAEQIIN--KWDVLQKNIKWLEKYFTININKSSKQVSNKNLKYIKWVLTG----F 587

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----NPGSKLEKAQQLGVKIMNEEQFLF 716
           +  + Q  + ++G  VS  +S+ TDI++V D     NP  K+ KA+ LG+KI+ + +   
Sbjct: 588 RDKELQNKIEEMGGTVSNSVSKNTDIVVVKDSSVLNNPTGKVLKAKDLGIKIIEKSKVSK 647

Query: 717 LL 718
           L+
Sbjct: 648 LI 649


>gi|326392616|ref|ZP_08213952.1| DNA ligase (NAD(+)) [Thermoanaerobacter ethanolicus JW 200]
 gi|325991342|gb|EGD49998.1| DNA ligase (NAD(+)) [Thermoanaerobacter ethanolicus JW 200]
          Length = 210

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 10/197 (5%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
           +YH+  YY   +P I D EYD L R    +   +P+      P+ P  ++GGE       
Sbjct: 20  NYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEFK---TPDSPSQRVGGEPLKEFEP 76

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
            TH +P LSL   ++  +LR F  R+           + + +E KIDG  + + YE G F
Sbjct: 77  FTHVVPMLSLANAFSEGELRDFDRRVREAVG-----DVEYVVELKIDGLSVELIYENGIF 131

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
              + RGDG  GE+V+  ++ I +IP  L  ++   + VRGEV++ +  F  LN+E   +
Sbjct: 132 TVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDVS--LVVRGEVFMPRTSFEKLNEEREKI 189

Query: 209 GRKPYANPRNAASGILR 225
             KP+   +   S   +
Sbjct: 190 RGKPFCKSQKCCSRFFK 206


>gi|213419664|ref|ZP_03352730.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 190

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 100/198 (50%), Gaps = 13/198 (6%)

Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
           +  +   G  S  N+ +++ K +  +  RF+++LGIR VG   A  LA Y+ + +     
Sbjct: 1   MTGLDRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAA 60

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS---PSIGRHE 640
                         L +VP VG ++A  +  F+    N   +  LL E       +  + 
Sbjct: 61  T----------IDELQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINA 110

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
           + + S    K +V TG+L ++ R  A+  +  LGA V+  +S+KTD++I G+  GSKL K
Sbjct: 111 QEIDSPFAGKTVVLTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAK 170

Query: 701 AQQLGVKIMNEEQFLFLL 718
           AQ+LG+ +++E + + LL
Sbjct: 171 AQELGITVIDEAEMIRLL 188


>gi|312601241|gb|ADQ90496.1| DNA ligase [Mycoplasma hyopneumoniae 168]
          Length = 559

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 173/602 (28%), Positives = 280/602 (46%), Gaps = 68/602 (11%)

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            + A  RGDG  GE+V      I        +N  E +EVRGE+YI  + F +L      
Sbjct: 1   MIKALTRGDGVFGENVLVNALKINDEFIPKKINYLEDLEVRGEIYIDNSTFASLQ----- 55

Query: 208 VGRKPYANPRNAASGILRRLNPTD---------------ITRYLNFFVHGLGKTSEIFAK 252
           +  K + NPRNAASGILRR                      RYL  F + L    +    
Sbjct: 56  LETKKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFRYLKSFFYTLVNPEKHKIN 115

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q++ +  +R LGF VN   ++ +    + ++ + +K  R  L Y+IDG+V KV+EFS+ 
Sbjct: 116 SQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDFLNYNIDGVVVKVNEFSIY 175

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++LG  ++ P   I+ KF +  A T+LL I   IGRTG +T  A++EPV + G+ I++A 
Sbjct: 176 EKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTYNAKIEPVTLAGSKISSAI 235

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L N  YI+ L            + +   V +K+AGE+IP+++  + N    +   FS   
Sbjct: 236 LPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQIIGSVHNYPKTN---FSVVK 281

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
            CP C S +V   +          +      C    L+++ HF S++A NIE L ++++ 
Sbjct: 282 NCPKCNSELVNSESGLD-------QFCQNQFCPEIILQKIVHFCSKNALNIESLAQKRIK 334

Query: 493 FFFKSEDPAFSIRIPADIFTLQRR----------QQTSTTKIENILGFGDVSVTNLYDSI 542
            F +       I    DIF L+ +          +    TK          S+  L + +
Sbjct: 335 KFLEK----GLISSACDIFYLKDKLELIYERLSNKNQLLTKQNASQSMQIKSIMKLLNEV 390

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            K +NI   R IF LGIR+VG + A+ L++Y  +               N D+  L    
Sbjct: 391 EKAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNISELR----------NLDFNLLKNQY 440

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662
             G +I +++++++ N +N   +  L             N S+         +G L K  
Sbjct: 441 DFGPVIIESLIDYFNNQKNSEQLNCLETVGFSFKTTFLTNQSNSWA--SFAISGKLSK-P 497

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R +    + + GA     L++KTD +++G + GSK+EKA++ G+KI+NE QF  L++   
Sbjct: 498 RDEYVRIIEESGASFHESLTKKTDFLLLGQSAGSKIEKAKKAGIKIINEVQFFDLIKNSK 557

Query: 723 TT 724
            T
Sbjct: 558 KT 559


>gi|153831338|ref|ZP_01984005.1| DNA ligase [Vibrio cholerae 623-39]
 gi|148873180|gb|EDL71315.1| DNA ligase [Vibrio cholerae 623-39]
          Length = 159

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 5/161 (3%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +    + L+ L + +  H   YY    P I D+EYD L R    +  A P+L      + 
Sbjct: 1   MSDVAQRLTELRKTLHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELM---SSDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG    +   V H IP LSL+  ++  +L  F  R+         ++  F  EPK
Sbjct: 58  PSLRVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
           +DG  +++ YE G    AA RGDG +GE+++  +R I +IP
Sbjct: 116 LDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIP 156


>gi|48249475|gb|AAT40982.1| putative DNA ligase [Xenorhabdus nematophila]
          Length = 168

 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 93/175 (53%), Gaps = 14/175 (8%)

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
             RFI+SLGIR VG   A +L  ++ + +               D  +LI V  VG I+A
Sbjct: 4   FARFIYSLGIREVGETTAANLVSHFGTLEKLQAA----------DTEALIAVQDVGGIVA 53

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKIQRHK 665
             +V F+  P N   ++ L+  +       E      +      K +V TG+L ++ R +
Sbjct: 54  SHVVNFFNEPHNQAVIDDLVNNIGIHWESAESPNLGEIDGPFAGKTVVLTGSLNRLSRDE 113

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           A++ +  LGA V+  +S+KTD++I G+  GSKL KA +LG+ +++E++ + LL++
Sbjct: 114 AKDKLAALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELGIPVIDEDEMIRLLRE 168


>gi|298486340|ref|ZP_07004403.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298159347|gb|EFI00405.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 628

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 172/482 (35%), Positives = 260/482 (53%), Gaps = 43/482 (8%)

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P+++EVRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F 
Sbjct: 13  WPDVLEVRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFC 72

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +GLG+TS   A     +L+ ++  G PV+  ++ AN     + YY ++   R TL Y+I
Sbjct: 73  CYGLGQTSAEIADTHIGVLETLKKWGMPVSRELKLANGVEECLDYYRDIGERRLTLSYEI 132

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359
           DG+V+KV+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG +TPVARL+
Sbjct: 133 DGVVFKVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLK 192

Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
           PV + G ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++  
Sbjct: 193 PVKVAGVMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAE 241

Query: 420 ERHPDAQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
            R  +A+    P  CP+C S V       R    +T    A +RC G LAC AQ  + + 
Sbjct: 242 RRPENARAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAII 301

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533
           H+VSR A +IEGLG + ++     +     I  PAD++ L+  Q         + GF ++
Sbjct: 302 HYVSRRAMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEI 351

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
           S   L  +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  +      
Sbjct: 352 SSNKLLKAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV------ 405

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIE 648
               L  +P VG  +A  I  F+++  N   ++ALL E    +    +       S+ +E
Sbjct: 406 ----LTYLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLKLQDQGELGAEFAASTTLE 461

Query: 649 NK 650
             
Sbjct: 462 GL 463



 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 103/257 (40%), Gaps = 20/257 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   +++ + +   +      D    +      F     +         +   G   
Sbjct: 387 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLKL 444

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +LE  I  L I  VG   A+ LA  + + +               D
Sbjct: 445 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 494

Query: 595 WLSLIR-VPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649
           WL + + +P   +  A+++ +F+    +     A+EA LK+        +K V    +  
Sbjct: 495 WLDMRQTLP---EKQAKSVRDFFDESAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 551

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ ++
Sbjct: 552 QTWVLTGSLERMSRDVAKEKLETLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 611

Query: 710 NEEQFLFLLQQYNTTLR 726
           +E+  L  L +    + 
Sbjct: 612 DEDALLKRLTELGVAVD 628


>gi|218509214|ref|ZP_03507092.1| NAD-dependent DNA ligase LigA [Rhizobium etli Brasil 5]
          Length = 202

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 93/200 (46%), Positives = 132/200 (66%), Gaps = 3/200 (1%)

Query: 26  QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85
           +EI++HD  Y    +  I D++YDALKRR DA+   FP+L R    + P   +G   +++
Sbjct: 6   KEIAHHDALYQGKDQREISDADYDALKRRNDALEVRFPELIRE---DSPSRHVGAAPSVT 62

Query: 86  LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145
              V H+ P LSL+  ++ ED++ F+  +YRF  +  D SI FT EPKIDG  ++IRYE 
Sbjct: 63  FSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAFTAEPKIDGLSMSIRYEN 122

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
           G+ V AA RGDG +GE+V+A IR I  IP  L   +P ++E+RGEVY++K+DFLALN +M
Sbjct: 123 GRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIRGEVYMAKSDFLALNRQM 182

Query: 206 IAVGRKPYANPRNAASGILR 225
            A G++ Y NPRN A+G LR
Sbjct: 183 EAEGKQTYVNPRNTAAGSLR 202


>gi|148244425|ref|YP_001219119.1| DNA ligase (NAD+) [Candidatus Vesicomyosocius okutanii HA]
 gi|166216276|sp|A5CXB8|DNLJ_VESOH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146326252|dbj|BAF61395.1| DNA ligase (NAD+) [Candidatus Vesicomyosocius okutanii HA]
          Length = 632

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 140/690 (20%), Positives = 258/690 (37%), Gaps = 102/690 (14%)

Query: 36  YQYSKPIILDSEYDALK-RRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           Y+  KPII + +YD +            P     E    P  +   E      KV     
Sbjct: 36  YRSGKPIISNEDYDFIYLATLKNKEPNNPLFKSIE----PEGRAFAE-----EKVLLPEL 86

Query: 95  TLSLEKIWNIEDLRKFITRIYRF--WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152
            LS++K ++  ++ K+I R+ +       D N+I     PK+DG      ++ G      
Sbjct: 87  MLSIDKAYSWNEMSKWIERLEKSGMLIGLDLNAIQIKATPKLDGFAG---FDDGN--RLY 141

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
            RGDG  G D+S   +    +               GE+ + K+ F              
Sbjct: 142 TRGDGKKGSDISRVFKRGLCV-----FKDSGRGLGAGEIVVKKSYFEKYLVH-------S 189

Query: 213 YANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           +  PRN  S +++     +  +        L             M + +      V+  +
Sbjct: 190 FEYPRNFQSSLIKEKALDEQAQKAIIDKGALFVPFIKLPIWSGSMTELVAKFEEIVSQVL 249

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
                                   +D+DG+V++V    L+ Q+G   +  RW I+ K  +
Sbjct: 250 VMV--------------------DFDVDGVVFEVINIDLKTQMGANRKFHRWQIAFKENK 289

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
                ++L++  Q+GR+G +TPVA +EP  + GA I   T H+             +   
Sbjct: 290 DIVQVKVLNVMPQVGRSGKITPVAEVEPTLLSGATIVRVTGHHY-----------GLVKE 338

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
           + + +G  V + R+G VIPK++ ++         P   P  C  C   +V + +      
Sbjct: 339 QGLGIGSVVELTRSGLVIPKIISVLKP------MPVDIPDNCLSCGMPLVWESD------ 386

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512
                C     C AQ + R+ +F    A N +G G   ++  +        IR  + I+T
Sbjct: 387 --FLVCVNHKNCPAQIIGRITYFFKVLANN-DGFGIATVEKLYAHN-----IRSVSQIYT 438

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L   +  +        G           S +    I   RF+ + G+  +G     +L K
Sbjct: 439 LNVERLMAIGF-----GEKTSINLISQLSRSISEKIEDWRFLAAFGMHRMGLGNCENLLK 493

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ---NPRNICAVEALL 629
            Y     F           +     +  +    ++ AQ IV+      +  N    +   
Sbjct: 494 SYRLNDIF-----------DLTLEQITNIDGFAELTAQVIVQGLVSIVDEYNQ-IYQYNF 541

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
              +    +  + +  E+ +K++VFTG +    R++ +++   +G  VS  +S K D ++
Sbjct: 542 NLDTTVFTKDLQTLMHELFDKRIVFTGKM-NCPRNEMKKHAKLVGIKVSTTISTKIDYLV 600

Query: 690 VGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           +G   G  K++ A++LGV +M E  +L  +
Sbjct: 601 IGSRVGQKKIQNAEKLGVVVMTEADYLSKI 630


>gi|226327976|ref|ZP_03803494.1| hypothetical protein PROPEN_01867 [Proteus penneri ATCC 35198]
 gi|225203680|gb|EEG86034.1| hypothetical protein PROPEN_01867 [Proteus penneri ATCC 35198]
          Length = 186

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 57/196 (29%), Positives = 102/196 (52%), Gaps = 14/196 (7%)

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
                  L  +++K ++ +  RFI++LGIR VG   A  L  ++ + +            
Sbjct: 1   MKNQQKKLITALDKAKSTTFARFIYALGIREVGEATASGLTAHFSTLEALRNA------- 53

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSE 646
              D  +L  VP VGDI+A+ +V F+Q   N   ++ L+ +   +         +   + 
Sbjct: 54  ---DVEALKLVPDVGDIVAKHVVNFFQEEHNRTVIDQLINDAGITWQAPIIVTHEVGENP 110

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
              K +V TG+L ++ R +A++ +  LGA VS  +S+KTD++I G+  GSKL KA +LG+
Sbjct: 111 FAGKTVVLTGSLSQLTRDEAKDRLVALGAKVSGSVSKKTDMVIAGEAAGSKLVKANELGI 170

Query: 707 KIMNEEQFLFLLQQYN 722
            +++E++ + LL Q  
Sbjct: 171 TVIDEDEMIRLLDQSK 186


>gi|225013054|ref|ZP_03703469.1| DNA ligase (NAD(+)) [Flavobacteria bacterium MS024-2A]
 gi|225002782|gb|EEG40763.1| DNA ligase (NAD(+)) [Flavobacteria bacterium MS024-2A]
          Length = 183

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 89/173 (51%), Gaps = 5/173 (2%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +++ R ++ +L + +  H+  YY    PII D E+D L ++ + +    PDL    D N 
Sbjct: 1   MQEIRNKIEALREVLHDHNHRYYILDDPIISDYEFDQLLQQLNELEVQNPDLT---DLNS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++GG +  S   V H  P  SL   ++ E+L ++  R+ +   ++    I +T E K
Sbjct: 58  PTRRVGGGVTKSFETVPHKYPMYSLSNTYSKEELMQWEERLRKSLGEE--TQIEYTCELK 115

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
            DG  I++ YE G  + A  RGDG  G++++  +R I T+P  L  + P+   
Sbjct: 116 FDGASISLTYENGILIKAITRGDGLQGDNITTNVRTIKTVPLKLKSDFPKFFV 168


>gi|115380146|ref|ZP_01467179.1| hypothetical protein STIAU_7665 [Stigmatella aurantiaca DW4/3-1]
 gi|115362851|gb|EAU62053.1| hypothetical protein STIAU_7665 [Stigmatella aurantiaca DW4/3-1]
          Length = 150

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 50/144 (34%), Positives = 81/144 (56%), Gaps = 1/144 (0%)

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635
           + +  A+           D  +L RV  VG  +AQ +  F+Q P+N  A++ALL     +
Sbjct: 3   TAKALAEAFPEAPLLYTADMEALTRVKDVGPTMAQVLHAFFQEPQNRAAIDALLAAGV-T 61

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
               + N       K +V TG +  + R +A+E + + G  VS  +SRKTD ++ G++ G
Sbjct: 62  PAPPQVNTGGPFAGKTVVLTGGMTGMSRDQAKEEIERRGGKVSGSVSRKTDFVVAGEDAG 121

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SKL+KAQ+LGV++++E+ FL LLQ
Sbjct: 122 SKLKKAQELGVRVLDEQAFLKLLQ 145


>gi|148989162|ref|ZP_01820552.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP6-BS73]
 gi|147925385|gb|EDK76463.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP6-BS73]
          Length = 251

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 78/268 (29%), Positives = 134/268 (50%), Gaps = 22/268 (8%)

Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510
           +   A RC     C AQ +E L HF SRDA NI GLG   ++  F     A  ++  ADI
Sbjct: 5   EDEVALRCINPR-CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADI 59

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
           + LQ            + G  + S   LY +I   +  S E+ +F LGIRHVG++ ++ L
Sbjct: 60  YRLQEEDF------LLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQLL 113

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
            +Y+ S +N  Q           D   +  +  +G +IA+++  ++    +   +  L +
Sbjct: 114 LQYFHSIENLYQA----------DSEEVASIESLGGVIAKSLQTYFAAEGSEILLRELKE 163

Query: 631 EVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
                  +       + +    +V TG L++++R +A+  +  LGA V+  +S+KTD+++
Sbjct: 164 TGVNLNYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTDLVV 223

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           VG + GSKL+KAQ+LG+++ +E     L
Sbjct: 224 VGADAGSKLQKAQELGIQVRDEAWLESL 251


>gi|261886171|ref|ZP_06010210.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 292

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 96/303 (31%), Positives = 146/303 (48%), Gaps = 14/303 (4%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           + +       ++     YY    P+  D EYD L           PDL  S     P N+
Sbjct: 3   KNDYLKAVDSLNLWAKAYYTDDSPMASDDEYDKLYNAVVQFEKENPDLKLSY---SPTNR 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           IGGE+     K++H     S+E I++  +L  +I+R        D     F  EPK DG 
Sbjct: 60  IGGEILDEFKKISHIEKMWSMEDIFSDSELVAWISR-------GDKTDCEFFAEPKFDGA 112

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE G  + AA RGDG  GEDV+   + I ++P  L ++  + IE+RGEV I+K+D
Sbjct: 113 SLNLLYENGNLISAATRGDGSVGEDVTNNAKVISSVP--LQIDYKDKIEIRGEVVITKDD 170

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N E       P ANPRNAA+G LR+L+      R L F+  G+G  + +      +
Sbjct: 171 FELINIERSKNSEPPLANPRNAAAGSLRQLDNGIVKQRKLKFYPWGVG-ENSLKFNKHSQ 229

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           ++  +R LGF  +N  +       +   Y E+ S+R   P  +DG+V +V++ S   QLG
Sbjct: 230 IMDFVRSLGFLHDNFCKVIRGIDELKIAYKELLSVRELKPILMDGMVIRVNDLSKANQLG 289

Query: 317 ERA 319
              
Sbjct: 290 YTR 292


>gi|255023537|ref|ZP_05295523.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J1-208]
          Length = 419

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 170/459 (37%), Positives = 251/459 (54%), Gaps = 41/459 (8%)

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
            A RGDG  GED++A +R I +IP  L  +    IEVRGE ++ K  F  LN+     G+
Sbjct: 1   GATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSFQKLNEIREEEGQ 58

Query: 211 KPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269
             +ANPRNAA+G LR+L+     +R L+ F++ +    E+  +     L  +  LG  VN
Sbjct: 59  MLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSAGLDMLETLGLKVN 118

Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
              R  N+   + +Y +E    R+ L YDIDG+V K++    Q+Q+G   +SPRW I++K
Sbjct: 119 KERRLCNSLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNNLEQQRQMGTTVKSPRWSIAYK 178

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389
           F  ++  T+LLDI++ +GRTG++TP A LEPV + G  ++ A+LHNED           +
Sbjct: 179 FPAEEVPTKLLDIELNVGRTGVVTPTAVLEPVRVAGTTVSRASLHNED-----------L 227

Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449
              +DIR+GD VL+K+AG++IP+V+  I  ER    +PF  P  CP C S +VR      
Sbjct: 228 ITEKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEKPFHMPKNCPTCDSELVRLEEE-- 285

Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509
                A RC     C AQ  E L HFVSR+A NI+GLG++ +   F        I+  AD
Sbjct: 286 ----VALRCINPK-CPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFSQ----HLIKDVAD 336

Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569
           +F L +       K+  +   G+ SVTNL  SI   +  SLE+ +F LGIRHVGA+ A+S
Sbjct: 337 LFFLSKE------KLLELERMGEKSVTNLLASIEASKQNSLEKLLFGLGIRHVGAKAAKS 390

Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
           LA ++ +  N              D  +L  +  +G+ +
Sbjct: 391 LAIHFDTMDNL----------KVADKETLTSINDIGEKM 419


>gi|145640786|ref|ZP_01796369.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
 gi|145274712|gb|EDK14575.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.4-21]
          Length = 150

 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 84/158 (53%), Gaps = 11/158 (6%)

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           +G   A +LA ++ +                 +   L +VP VG+++A  I  F++   N
Sbjct: 1   MGEATALNLANHFKTLDALKDA----------NLEELQQVPDVGEVVANRIFIFWREAHN 50

Query: 622 ICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
           +  VE L+ +         ++   +  ++K +V TGTL ++ R++A+  + QLGA VS  
Sbjct: 51  VAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKALLQQLGAKVSGS 110

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +S KTD +I GD  GSKL KAQ+L + ++ EE+FL  +
Sbjct: 111 VSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 148


>gi|34764322|ref|ZP_00145154.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27885904|gb|EAA23248.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 455

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 141/475 (29%), Positives = 236/475 (49%), Gaps = 41/475 (8%)

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL 243
           +E+RGEV +   +F  LN+E +  G + +ANPRNAASG LR+L+   +    L+ + + L
Sbjct: 1   MEIRGEVVLPLANFEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKERGLDAYFYFL 60

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
            +  ++  K   E ++ +  +G           T   I    +  +  R  LPY+ DGLV
Sbjct: 61  VEADKLGLKSHSESIKFLESMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLV 120

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            KVDE +L  ++G  +++PRW I++KF   Q ST L  +  Q+GRTG LTPVA L+ V +
Sbjct: 121 IKVDEINLWNEIGYTSKTPRWAIAYKFPAHQVSTILNGVTWQVGRTGKLTPVAELQEVEL 180

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ +  A+LHN   I+            +DIR+GDRV +++A E+IP+VV  I  +R  
Sbjct: 181 SGSKVKRASLHNISEIQR-----------KDIRIGDRVFIEKAAEIIPQVVKSIKEDRTG 229

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           + +    P  CP+C  ++ R+      K            C A+    +++FVSRDA NI
Sbjct: 230 NEKVIEEPINCPVCNHKLEREEGLVDIK-------CVNEECPAKVQGEIEYFVSRDALNI 282

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            GLG + ++ F         I+   DI+ L+  ++     +ENI   G  S+ NL +SI 
Sbjct: 283 MGLGSKIVEKFID----LGYIKTVVDIYDLKNHRE----ALENIDKMGKRSIENLLNSIE 334

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + +N   ++ I++LGI  +G   ++ LAK   +               N  +  L  +  
Sbjct: 335 ESKNRDYDKVIYALGIAEIGKVTSKILAKASKNIDKLM----------NMTFEELTSIEG 384

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVF 654
           +G I A  I+ F++  +N   +E+L ++      +  +    N++     KK + 
Sbjct: 385 IGXIAANEIIAFFKKEKNQKIIESLKEKGLKFEIKESETNVQNINPNFAXKKFLI 439


>gi|212374934|pdb|3BAC|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+
           Dependent Dna Ligase
          Length = 270

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 92/265 (34%), Positives = 149/265 (56%), Gaps = 4/265 (1%)

Query: 80  GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
            +      ++ H IP LSL+  ++  +   F+ RI           + F  EPK+DG  +
Sbjct: 1   AKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPKLDGLAV 59

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198
           +I Y  G+   AA RGDG +GED++A IR I  +P ++L+ N P  +EVRGEV++    F
Sbjct: 60  SILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHAGF 119

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NFFVHGLGKTSEIF-AKGQYE 256
             LN   +    K +ANPRNAA+G LR+L+P   ++       +G+G    +      Y 
Sbjct: 120 ERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVGLPTTHYA 179

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            LQ ++ +G PVN  +R  N    ++ +Y ++++ RS+L YDIDG V K+++ +LQ +LG
Sbjct: 180 RLQWLKSIGIPVNPEIRLCNGADEVLDFYQDIQNKRSSLGYDIDGTVLKINDIALQNELG 239

Query: 317 ERARSPRWMISHKFAEKQASTRLLD 341
             +++PRW I++KF  ++  T L D
Sbjct: 240 FISKAPRWAIAYKFPAQEELTLLND 264


>gi|167950972|ref|ZP_02538046.1| DNA ligase, NAD-dependent [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 256

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 92/223 (41%), Gaps = 13/223 (5%)

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL-----ERFIFSL 557
             R   D+  L   ++        I G G  +   + D++               ++  +
Sbjct: 31  LARHFRDLQPLMTAERDDFIHDSGIKGVGASTAQAICDALAGPLPAEPLAGGLADWLAGM 90

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            +R +   +A  L++ + S +   Q    ++            V  VG I+A  IV F++
Sbjct: 91  NVRGLNRAVAERLSERFGSLEALRQATPELLRREQRSL-----VEGVGPIVADHIVTFFR 145

Query: 618 NPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            P N   +E L +           E    + +  K +V TGTL +  R   +  +  LG 
Sbjct: 146 QPHNQEVIEKLRQVGVNWEEEAPPETPAEAPLLGKTVVLTGTLSR-PRSAIKAELQALGG 204

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            V+  +S+ TD +I G   GSKL KAQQLGV+I++E     LL
Sbjct: 205 QVTGSVSKNTDYLIAGAEAGSKLSKAQQLGVEILDEAGLARLL 247



 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + +  SL RF+F+LGIR VG   A +LA+++   Q       +   H++        + 
Sbjct: 4   QRSKQTSLARFLFALGIREVGDATAAALARHFRDLQPLMTAERDDFIHDSG-------IK 56

Query: 603 LVGDIIAQAIVEFYQNP 619
            VG   AQAI +    P
Sbjct: 57  GVGASTAQAICDALAGP 73


>gi|237756712|ref|ZP_04585213.1| DNA ligase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691122|gb|EEP60229.1| DNA ligase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 215

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 115/223 (51%), Gaps = 18/223 (8%)

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            +R   DI+ L      +   I+NI GFG  SV NL ++I + +   L R I+ LGIR+V
Sbjct: 10  LVRTIPDIYRL------NYNLIKNIPGFGPKSVENLKNAIEESKKRPLYRLIYGLGIRYV 63

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           G   A++LA       +                  LI++P VGD +A  I  F+ N +N+
Sbjct: 64  GEVTAKTLASAVKCIDDLKDFT----------ITDLIKLPDVGDKVASEIYNFFHNQQNL 113

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             ++ L      +    E+    ++     VFTGTL+   R KA+E V  LG  V   +S
Sbjct: 114 KMIQELRDLGVKTCHEEEEKK-GKLAGLNFVFTGTLKCCSREKAKEIVESLGGNVLDTVS 172

Query: 683 RKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQYNTT 724
           +K   ++VG+ PGSKL+KAQ+LG VKI+NEE+FL L+   N  
Sbjct: 173 KKVHYLVVGEEPGSKLQKAQKLGTVKIINEEEFLKLIGGENAE 215


>gi|257484999|ref|ZP_05639040.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 181

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 62/184 (33%), Positives = 94/184 (51%), Gaps = 10/184 (5%)

Query: 48  YDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDL 107
           YD L     A+    P L     P+ P  ++G     +  +V H +P LSL   +   D+
Sbjct: 1   YDRLFHELKALEAENPHLV---TPDSPTQRVGSAALSAFTQVRHEMPMLSLGNAFEESDM 57

Query: 108 RKFITRIYRFWQKKDDN------SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGE 161
            +F  R+         +       + ++ EPK+DG  +++ Y  G  V  A RGDG +GE
Sbjct: 58  LEFDRRVTEGLDLPAGDLFGAGSKVQYSCEPKLDGLAVSLLYRDGALVCGATRGDGTTGE 117

Query: 162 DVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220
           D+S  +R +  IP  L     P+++EVRGEV++SK  F  LN   + +G K +ANPRNAA
Sbjct: 118 DISVNVRTVRNIPLKLKGKGWPDVLEVRGEVFMSKAGFERLNASQLEIGGKTFANPRNAA 177

Query: 221 SGIL 224
           +G L
Sbjct: 178 AGSL 181


>gi|15078917|ref|NP_149668.1| 205R [Invertebrate iridescent virus 6]
 gi|82012211|sp|Q91FW5|VF205_IIV6 RecName: Full=Putative DNA ligase 205R
 gi|15042287|gb|AAK82067.1|AF303741_205 205R [Invertebrate iridescent virus 6]
          Length = 615

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 123/694 (17%), Positives = 253/694 (36%), Gaps = 113/694 (16%)

Query: 29  SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88
              D  Y+   K I+ D+EYD L  +                       +G    +S  K
Sbjct: 26  EKADHFYFNTEKEILTDNEYDILAEQLQ------------------STNVGCSPLIS--K 65

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
               +   SL+K++N ++L  +I ++          S  + ++ K+DG    I  +  K 
Sbjct: 66  TDLPLWMGSLDKVYNDKELNLWIKKV---------ASDKYIIQCKLDGVSCLIINKDNKL 116

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
             A  RG+G  G D+S  I+       +    +P  I +R E+ I K  F        + 
Sbjct: 117 -KAYTRGNGKVGTDISHLIKYF-----IKDKCLPNNIALRCEIIIKKETFNQKYKHAFSN 170

Query: 209 GRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268
            R   +   N     +      D+       ++      +     Q E+++++       
Sbjct: 171 PRSFVSGVVNRKQENIVISELNDLCLIAYELINFPVNEYQKNILTQIEIIEQL--NFIQF 228

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
            N    +N F    +  N  K +++   +++DGLV   +   ++   G     P+  I+ 
Sbjct: 229 VNFKTISNEFLTQKALSNLFKEMKNNSLFEMDGLVILANTPYIRVTEGN----PKHSIAF 284

Query: 329 KFA-EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387
           K   +     ++  I+  +G+TG+ TP   + P  I G  ++  T  N +Y+        
Sbjct: 285 KVRGDNVKEAKVTFIEWNVGKTGVFTPKVHIVPTEINGTTVSCFTGFNANYL-------- 336

Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447
                + I  G  +LV RAG+ IP+++ +         + + +   C             
Sbjct: 337 ---IEKGIGEGAIILVTRAGDAIPQIIGVKQTGVLTFPKDYEWKGDCR------------ 381

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507
                         +    + ++++ HFV  ++ +I  + +  ++  + +          
Sbjct: 382 ----------IVEKIESKERIIKQILHFV--ESVDIPYIKEATINKLYNNG-----CTSI 424

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
                L ++          +L FG    + +Y+SI K     +E+F+             
Sbjct: 425 ELFLKLTQKD---------LLLFGPKLSSTIYNSIQKSFEAPIEKFLSGYNAFGDYIGEK 475

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI--CAV 625
           + L           Q+  N+    N D + L+ +  +G   A  I + + N + I    +
Sbjct: 476 KILL--------LLQKYPNLFELENLDAIDLVSIEGIGSKTATQIKQHFINAKLIYNNII 527

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA-QEYVTQLGAVVSAILSRK 684
           +  L +        +  V       K+  +GT     R     + +   G V+S  +++K
Sbjct: 528 QNKLFKGVLHTPSKQNTVELF----KVCVSGT-----RDPLFIQELKNRGFVLSDNITKK 578

Query: 685 TDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLF 716
             ++IV ++    +K++KA  +G+ I+  E F  
Sbjct: 579 VKVLIVKNSNEETTKVKKANSVGITILTLEDFKQ 612


>gi|257484998|ref|ZP_05639039.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 572

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 147/431 (34%), Positives = 224/431 (51%), Gaps = 42/431 (9%)

Query: 231 DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290
              R L F  +GLG+TS   A     +L+ ++  G PV+  ++ AN     + YY ++  
Sbjct: 8   TANRPLEFCCYGLGQTSAEIADTHIGVLETLKKWGMPVSRELKLANGVEECLDYYRDIGE 67

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
            R TL Y+IDG+V+KV+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG
Sbjct: 68  RRLTLSYEIDGVVFKVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTG 127

Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410
            +TPVARL+PV + G ++ NATLHN D +  L            + +GD V+++RAG+VI
Sbjct: 128 AVTPVARLKPVKVAGVMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVI 176

Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLAC 464
           P+VV ++   R  +A+    P  CP+C S V       R    +T    A +RC G LAC
Sbjct: 177 PQVVQVVAERRPENARAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLAC 236

Query: 465 SAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI 524
            AQ  + + H+VSR A +IEGLG + ++     +     I  PAD++ L+  Q       
Sbjct: 237 GAQLKQAIIHYVSRRAMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID---- 288

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
             + GF ++S   L  +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +
Sbjct: 289 --LEGFAEISSNKLLKAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQAL 346

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--- 641
             +          L  +P VG  +A  I  F+++  N   ++ALL E    +    +   
Sbjct: 347 PEV----------LTYLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLKLQDQGELGA 396

Query: 642 --NVSSEIENK 650
               S+ +E  
Sbjct: 397 EFAASTTLEGL 407



 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 105/257 (40%), Gaps = 20/257 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   +++ + +   +      D    +      F     +         +   G   
Sbjct: 331 VLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRNVIDALLGECGLKL 388

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +LE  I  L I  VG   A+ LA  + + +               D
Sbjct: 389 QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 438

Query: 595 WLSLIR-VPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649
           WL + + +P   +  A+++ +F+ +  +     A+EA LK+        +K V    +  
Sbjct: 439 WLDMRQTLP---EKQAKSVRDFFDDSAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 495

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ ++
Sbjct: 496 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 555

Query: 710 NEEQFLFLLQQYNTTLR 726
           +E+  L  L +   T+ 
Sbjct: 556 DEDALLKRLTELGVTVD 572


>gi|6179416|emb|CAB59902.1| DNA ligase [Campylobacter jejuni]
          Length = 245

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 81/250 (32%), Positives = 121/250 (48%), Gaps = 15/250 (6%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +KE        +     YY+  +P+  D EYDAL R   A              + P  K
Sbjct: 3   KKEYLEKVALAASWMRAYYEKDEPLASDEEYDALIRELRAFEEQN---KDEISKDSPTQK 59

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           I   +     K+ H     S+E +++  +LR +  R              F +EPK DG 
Sbjct: 60  IAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAK--------CEKNFFIEPKFDGA 111

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            + + YE GK V  A RGDG  GED++  +  I  IP   ++N  E IE+RGEV I K+D
Sbjct: 112 SLNLLYENGKLVSGATRGDGEVGEDITLNVLEIDNIP--KTINYKEKIEIRGEVVILKDD 169

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256
           F  +N++   + +  +ANPRNAASG LR+L+ +    R L F+  G+G  + +      E
Sbjct: 170 FEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVG-ENTLNFTKHSE 228

Query: 257 MLQKMRCLGF 266
           ++Q +R LGF
Sbjct: 229 VMQFIRELGF 238


>gi|288575281|ref|ZP_06393611.1| DNA ligase, NAD-dependent [Neisseria mucosa ATCC 25996]
 gi|288568349|gb|EFC89909.1| DNA ligase, NAD-dependent [Neisseria mucosa ATCC 25996]
          Length = 446

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 106/455 (23%), Positives = 176/455 (38%), Gaps = 141/455 (30%)

Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERHPDA----------------------------- 425
           +RVGD V+V+RAG+VIP+VV +I   R                                 
Sbjct: 1   MRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDDLKQQQDDLFAETPSANQTQSV 60

Query: 426 ---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
              +P+  P+ CPIC+S + R+         A  RC+GG+ C AQ+ + L HF SR A +
Sbjct: 61  PLHKPYRLPTHCPICRSEIEREEGE------AVARCSGGMLCQAQRAQGLIHFASRKAMD 114

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI--------------- 527
           I+GLG++Q++     +     +R  AD++ L         ++ +                
Sbjct: 115 IDGLGQKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKEMADKASSENENGDAETVSG 170

Query: 528 ----------LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
                              N+   I   +   L RF+F+LGIRHVG   A++LA+ + S 
Sbjct: 171 DLSEPNTQTGKKQPTKWAENILAGIEASKTPELARFLFALGIRHVGERTAKTLAQAFGSL 230

Query: 578 QNFAQEINNIIA--------------------HNNDDWLSLIR----------------- 600
           ++  +    I+A                            L+                  
Sbjct: 231 EHVRRAPEPILACLPDIGTVVARSIAHFFAQDAQQAMIDELLAAGVVPQTQTVTIPPARH 290

Query: 601 ---------VPL--VGDIIAQAIVE---------------------FYQNPRNICAVEAL 628
                    +P   + +  AQA+ E                     +    +N   +E L
Sbjct: 291 AEPQHWIARLPGFKISENKAQALWELAGKSIEGLQTDKALPADWQTWRSEAQNTALLENL 350

Query: 629 LKEVSPSIGRHEKNV-----SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
               + +  +++        +  +  K  V TGTL  ++R +AQ  +   G  VS  +S+
Sbjct: 351 KTFFAQTSSKNQDEAFSDGLNEAVAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSK 410

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           KTD ++ G+  GSKLEKA  LGV +++EE+ L +L
Sbjct: 411 KTDYVVAGEAAGSKLEKANALGVAVLSEEELLAML 445


>gi|46204823|ref|ZP_00049431.2| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 277

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 126/277 (45%), Positives = 180/277 (64%), Gaps = 2/277 (0%)

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL   +  E++ +F+ RI RF   + D  I FT EPKIDG  + +RYE GK V AA R
Sbjct: 1   MLSLGNAFADEEVEEFVARIRRFLNLQADAPIAFTAEPKIDGLSLFLRYEAGKLVTAATR 60

Query: 155 GDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           GDG  GE+V+A    +  IP  LS  +IPE++EVRGEVY+S  DF A+N    A G+  +
Sbjct: 61  GDGEVGENVTANALTVKDIPETLSGADIPEVLEVRGEVYLSHADFAAINARQEAAGKPLF 120

Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA+G LR+L+P    +R L FF +  G+ SE F + Q  +L +    G PVN   
Sbjct: 121 ANPRNAAAGSLRQLDPAITASRPLRFFAYAWGEVSEPFTQTQSAVLDRFGGWGLPVNPQT 180

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           +   +   ++++Y  +++ R+ L YDIDG+VYKVD+   Q++LG  +R+PRW ++HKFA 
Sbjct: 181 KLCRSAEEMIAHYRAIEAERADLGYDIDGVVYKVDDLGFQRRLGFVSRAPRWALAHKFAA 240

Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369
           ++A T LL IDI +GRTG L P+ARL+PV +GG +++
Sbjct: 241 QEALTELLAIDINVGRTGSLNPLARLKPVTVGGVVVS 277


>gi|254673677|emb|CBA09272.1| DNA ligase [Neisseria meningitidis alpha275]
          Length = 414

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 94/410 (22%), Positives = 156/410 (38%), Gaps = 105/410 (25%)

Query: 404 KRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463
            R  ++  +       +  P  +P+  P+ CPIC+S + R+         A  RC+GG+ 
Sbjct: 14  HRQDDLFAEAPAANQTQSVPLYKPYRLPTHCPICRSEIEREEGE------AVARCSGGML 67

Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK 523
           C AQ+ + L HF SR A +I+GLG++Q++     +     +R  AD++ L         +
Sbjct: 68  CQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKE 123

Query: 524 IENI---------------------LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
             +                               N+   I   +   L RF+F+LGIRHV
Sbjct: 124 TADKTVAESDQMPSEGSSVGASGKHKKQPTKWAENILAGIESGKTPELARFLFALGIRHV 183

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------------------WLSLIR-- 600
           G   A++LA+ + + +   +    ++A   D                        L+   
Sbjct: 184 GERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAMIDELLAAG 243

Query: 601 ------------------------VPL--VGDIIAQAIVE-------------------- 614
                                   +P   + +  AQA+ E                    
Sbjct: 244 VAPQAQAVSLPAAQYAEPQRWIARLPGFKISENKAQALWELAGKSIEGLQTDKSLPADWQ 303

Query: 615 -FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGTLQKIQRHKAQE 668
            +   P+N   +E L    +      E    S      +  K  V TGTL  ++R +AQ 
Sbjct: 304 AWRSEPQNAALLENLKTFFAQMPSEDEAAQGSDGINEAVAGKTFVLTGTLPTLKRDQAQS 363

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +   G  VS  +S+KTD ++ G+  GSKLEKA  LGV +++E + L LL
Sbjct: 364 LIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 413


>gi|325474099|gb|EGC77287.1| hypothetical protein HMPREF9353_01637 [Treponema denticola F0402]
          Length = 437

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 106/473 (22%), Positives = 188/473 (39%), Gaps = 68/473 (14%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            K +  LE+ I  H D YY  ++P I D+E+DAL     A+             +     
Sbjct: 4   EKRILDLEKTIKKHQDLYYN-AQPEISDAEFDALWDELKALDPQNKLFFTVPLES----- 57

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
                     K  H IP  S EK  +      +  ++             + ++ K+DG 
Sbjct: 58  -----TDGFAKSEHIIPMGSQEKAADPPSFEAWALKM---------PFKEYIVQYKMDGA 103

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-------SLNIPEIIEVRGE 190
            + ++YE+G FV A  RGDG  G+D++  +  +  + + +           P    +R E
Sbjct: 104 SLELQYEEGHFVRAVTRGDGKIGDDITENVLKMKGLIKDITVNEGPAYGTKPFSGGIRCE 163

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           V + ++                 AN RNAA+G++++ N         F    +  +    
Sbjct: 164 VIMLRSIHQKYFK--------DKANCRNAANGLMKKKNGELCEHLNLFAYDAVQGSIGNP 215

Query: 251 AKGQYEMLQ------KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
             G             ++  GF     V+   +   ++ Y   +  IR +L YDIDGLV 
Sbjct: 216 FTGDAPFKTESEKLVWLKEAGFNCVE-VKYCKSIDEVIEYRAHVMDIRPSLDYDIDGLVI 274

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           K D          +   P   I+ KF+ ++A T L +I+         TP+A +EPV + 
Sbjct: 275 KNDTID---PEDMKRARPEKQIAFKFSLEEAVTVLKEIEWSES-GATYTPIALIEPVRLA 330

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G  +  A+L N + I+ L           ++++G RV+V + GE+IPK+  +  N   P+
Sbjct: 331 GTTVKRASLANPNIIRAL-----------NLKIGSRVVVTKRGEIIPKIEALAEN--PPN 377

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
            +   +P  C +C S +  +                 ++C      R++ ++S
Sbjct: 378 VKEIEYPDTCSVCGSPLTNEG---------TRLYCPNMSCPKLIHHRIEKWIS 421


>gi|229593084|ref|YP_002875203.1| NAD-dependent DNA ligase LigB [Pseudomonas fluorescens SBW25]
 gi|257096558|sp|C3K3F7|LIGB_PSEFS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|229364950|emb|CAY53062.1| putative exported DNA-ligase protein [Pseudomonas fluorescens
           SBW25]
          Length = 554

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 126/621 (20%), Positives = 227/621 (36%), Gaps = 97/621 (15%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           ++AR  +S+L ++I   DD Y++  +  + D  YD  ++R       FP  A +  PN P
Sbjct: 24  DEARAHVSTLAEQIRQWDDSYHRLGQSPVSDELYDQARQRLAQWHQCFP--APTATPNTP 81

Query: 75  --LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
              ++ G +         H +    LEK+ +   +  ++      W           ++P
Sbjct: 82  LASSR-GAQP--------HPVAHTGLEKLLDEHAVDAWLGTRKDVW-----------IQP 121

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +T+ Y++G+      RGDG  G D SA  R IP I + L   I   + ++GE+Y
Sbjct: 122 KVDGVAVTLVYQQGRLRQVISRGDGVMGHDWSASARKIPGIVQQLPDPI--DLVLQGELY 179

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
              +D                 N R+  +G++ R +  D          G+G     + +
Sbjct: 180 WRLDD--------HVQSASGGLNARSKVAGLMNRKHLGDTDAA------GIGLFVWAWPQ 225

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
           G     +++  L        ++ +     +S     ++     P         + +    
Sbjct: 226 GPAAFTERLSTLKRWGFTDTQRFSQPIRNISEAAHWRAYWYGHPLPFASDGVVLHQAQHA 285

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
                +  +P W  + K+   +A   + D+  +IGRTG +TP+  LEPV +    I+  +
Sbjct: 286 PAERWQVSTPYWAAAWKYPTTKALALVRDVQFKIGRTGRITPMLELEPVRLDDRQISRVS 345

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
                                DIR GD V +  AG+VIP++ ++I+              
Sbjct: 346 A-----------GSLKRWQSLDIRPGDHVSISLAGQVIPRLDEVILR------------- 381

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
                 S    DL         A  C      C  Q L RL          +  +G++  
Sbjct: 382 ------SSTRADLPVPNPGKFHALSCWQLDPGCEEQLLARLSWLSGNQGLALPHIGRETW 435

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
               +    A  I    D  TL       T ++ NI GFGD +   + DS +  R     
Sbjct: 436 SVLIQ----AGLIAGFLDWLTL------DTAELANIDGFGDRTRARVVDSFHSARQRPFA 485

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           +++ +LG+                   N   +   ++A +   W   + +  +G   A  
Sbjct: 486 QWLKALGVPPAARN-------------NLEGDWQTLVARDTQAW---LAIDGIGPGRAAQ 529

Query: 612 IVEFYQNPRNICAVEALLKEV 632
           +  F+++P      E L    
Sbjct: 530 LSAFFRDPHVQALAETLRVAG 550


>gi|15828872|ref|NP_326232.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) (fragment)
           [Mycoplasma pulmonis UAB CTIP]
 gi|14089815|emb|CAC13574.1| DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+]) (FRAGMENT)
           [Mycoplasma pulmonis]
          Length = 367

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 111/397 (27%), Positives = 210/397 (52%), Gaps = 34/397 (8%)

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            K+++ SL   LG+ ++     I++KF +K   T + DI + +G+TG++T  A+L+ V +
Sbjct: 2   IKLNDLSLYDLLGKTSKFFHHSIAYKFRKKIVMTTIQDIFVTVGKTGLITYNAKLQEVIL 61

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
            G+ I  ATLHN +YIK +            I +GD+V +++AGE+IP+VV ++  +   
Sbjct: 62  NGSKINAATLHNYEYIKNI-----------KINIGDKVYIEKAGEIIPRVVKLVNPK--N 108

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +   FS    CP C++++    N         ++    L C  +++++LK+FVS+D   I
Sbjct: 109 NHNYFSPIEICPSCKNKLSWSKN-------MLNQFCLNLDCIEKKIQKLKYFVSKDGLEI 161

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
           + LG ++++ FF        ++   DI+ L+     +   +  +  F + SV  L   I 
Sbjct: 162 QELGGKKIELFFAK----GWVKKIEDIYNLK----NNYDDLLKLEKFQEHSVNVLLHKIE 213

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           + + +   + I +LGI+++G ++A+SL K       F  +  N+++  + ++  L +   
Sbjct: 214 ESKQVYTWKLIAALGIKNIGKKLAKSLVKII-----FENDQKNLLSLLDFNYDELEKYDE 268

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
            G +  +++ EF+ N  N   ++ L +         E   S+++ENK  + TGTL+K  R
Sbjct: 269 FGSVKIESLKEFFANDENKNLIKFLSENGFEVKLEKEIIQSTKLENKTFLITGTLEK-PR 327

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
              +  + Q G ++S+ +S+K D +IVG NPGSK +K
Sbjct: 328 DFYKNLIVQNGGLISSSISKKLDYLIVGQNPGSKEKK 364


>gi|117306975|emb|CAL25732.1| hypothetical protein [Bacillus halodurans]
          Length = 143

 Score =  186 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 4/130 (3%)

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEI 647
            N     LI VP VGDI+A +IV F+++  N  +V+ LL+      P       +  S  
Sbjct: 1   MNATREELIAVPDVGDIVADSIVSFFEDEVNKMSVQRLLEFGVHPQPIEKPKPVSTDSYF 60

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
             K +V TGTL  + R +A   +   GA V+  +S+KTD++I G+  GSKL KA+QLG+ 
Sbjct: 61  YGKTVVLTGTLHLMTREEATAKLEACGAKVTGSVSKKTDLVIAGEKAGSKLAKAEQLGIP 120

Query: 708 IM-NEEQFLF 716
           ++ +E + + 
Sbjct: 121 VITDENELVK 130


>gi|167751779|ref|ZP_02423906.1| hypothetical protein ALIPUT_00019 [Alistipes putredinis DSM 17216]
 gi|167660694|gb|EDS04824.1| hypothetical protein ALIPUT_00019 [Alistipes putredinis DSM 17216]
          Length = 323

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 21/238 (8%)

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +IEGLG++ ++  F++      +   AD++ L+  Q         +   G+ S  N+  
Sbjct: 1   MDIEGLGEETVELLFEN----GLLHDIADLYDLRAEQL------ACLPRLGEKSAENIIR 50

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           SI     +  +R +F+LGIR VG   A+ LA ++ +                     LI 
Sbjct: 51  SIRGSVEVPFQRVLFALGIRFVGETTAKYLAAHFRTLDAVMHATR----------EELIE 100

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
              VG  IA AI++++ +  N+  +E L K    +   H+   S  +  K  V TG    
Sbjct: 101 ADEVGGKIADAIIDYFADAENLRIIERLRKAGLQTEAAHKALESESLAGKNFVITGRFSG 160

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
             R + +E +   G    A +S   + ++ G   G  K++KA QLGV+++ EE+ L +
Sbjct: 161 HSRDELKELIEAHGGKNLAGVSGNVEFLVAGKKIGPGKIQKATQLGVRLIPEEELLAM 218


>gi|291545736|emb|CBL18844.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Ruminococcus sp. SR1/5]
          Length = 225

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 116/240 (48%), Gaps = 22/240 (9%)

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            NI+GL +  L+ F         I    DIF + R +     +I  + GFG  S  NL +
Sbjct: 1   MNIDGLSEATLEKFIAR----GFIHDFGDIFEISRYKD----EIVEMEGFGQKSYDNLME 52

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           S+ + +  +L R I+SLGI ++G   A+ + +++ +         ++    +     +  
Sbjct: 53  SLERAKETTLPRVIYSLGIANIGLANAKVICRHFDN---------DLDRIRHASLEEVSD 103

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
           +  +G +IA  +V ++++  N   ++ L+  +       ++      E    V TG+L  
Sbjct: 104 IDTIGPVIAGNLVAYFRDEDNDRRLDHLMSFLHIQEDSPKQ--EQIFEGMNFVITGSLVH 161

Query: 661 I-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFL 717
              R +A+E +  LG  V+  +++KT+ +I  D  +  SK +KA++LG+ I++EE F  L
Sbjct: 162 FGNRSEAKELIESLGGKVTGSVTKKTNYLINNDIQSNSSKNKKARELGIPILSEEDFRKL 221


>gi|153834101|ref|ZP_01986768.1| DNA ligase [Vibrio harveyi HY01]
 gi|148869566|gb|EDL68561.1| DNA ligase [Vibrio harveyi HY01]
          Length = 124

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 48/124 (38%), Positives = 76/124 (61%), Gaps = 2/124 (1%)

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFT 655
           +I V  +G I+A+ I  F+   +N   V+ LL +    P I   ++ V   +E K +V T
Sbjct: 1   MIEVQDIGVIVAKHITTFFGEEKNQAVVQDLLAQGINWPEIAAPQEGVELPLEGKTVVLT 60

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
           GTL ++ R +A+E +  LGA V+  +S+KTDI+  G+N GSKL KAQ+LG++I  E+  L
Sbjct: 61  GTLSQLGRSEAKEALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQTEQDLL 120

Query: 716 FLLQ 719
            L++
Sbjct: 121 NLMK 124


>gi|149912310|ref|ZP_01900877.1| NAD-dependent DNA ligase [Moritella sp. PE36]
 gi|149804613|gb|EDM64677.1| NAD-dependent DNA ligase [Moritella sp. PE36]
          Length = 171

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              ++ +L +F++SLGIR VG   A +LA   L+     +               LI + 
Sbjct: 1   KAAKHTTLAKFLYSLGIREVGEATAANLANDLLTLDAIKKA----------SVERLILIS 50

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKI 661
            VGDI+A+ I  F++   N+  +  LL+   S      ++     +     V TGTL  I
Sbjct: 51  DVGDIVAKHIYYFFREAHNLEVIVQLLEAGMSWDDVAVKEASQQPLLGAIYVITGTLVNI 110

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            R  A+  +  LGA V+  +S+KT  ++ G   GSKL KAQ+LG+ I+ E+  L LL
Sbjct: 111 SRADAKTRLQDLGAKVAGSVSKKTTALVAGPAAGSKLTKAQELGIDILTEDDLLALL 167


>gi|238794537|ref|ZP_04638145.1| DNA ligase B [Yersinia intermedia ATCC 29909]
 gi|238726117|gb|EEQ17663.1| DNA ligase B [Yersinia intermedia ATCC 29909]
          Length = 567

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 112/625 (17%), Positives = 203/625 (32%), Gaps = 106/625 (16%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P E +S      E+++L+Q++      Y+Q    +I D  YD L+ +             
Sbjct: 33  PPERMS-----AEINTLKQQLDKWSVAYHQQGISLIADDVYDQLQEKLALWQSCH----- 82

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+      G  +        H +    L+K+ N   L  ++      W         
Sbjct: 83  -RLPDN----HGNTLIPGNGTFRHPVAHTGLKKLKNEAALANWMVGRKSLW--------- 128

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
             ++PK+DG  +T+ Y+ GK +    RG+G  G++ +     I  IP+      P  + +
Sbjct: 129 --VQPKVDGVAVTLVYQDGKLIQLLSRGNGLKGQNWTDKAPFITAIPQY-IATAPPWLTL 185

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247
           +GE+++   D L  +            N R A +G L R +P  +   L  F+       
Sbjct: 186 QGELFLQMGDHLQASS--------GGVNARAAVAGALMRKSPAALLPQLGIFIWAWPDGP 237

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               +      + ++ +GFP+     +          +       + LP+  DG+V +  
Sbjct: 238 SSMVEKG----ELLQAMGFPLTAKYSK-PIASSRDVAHFRHHWFHTALPFVTDGVVIRQA 292

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                +          W ++ K+  +Q  T + DI   IGRTG +T V  + PV I    
Sbjct: 293 AEPAGRNWQAVPGY--WAVAWKYPAQQQITEIKDIHFTIGRTGRVTVVLLVSPVKIDDKW 350

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           I    +                    DI  GD++++  AG  IP++  ++          
Sbjct: 351 IRRVNV-----------GSVSRWRQWDITSGDQIIIALAGHGIPRLESVVWRVSQ----- 394

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA--QQLERLKHFVSRDAFNIEG 485
                          ++  P  G       C   ++     Q L RL         +I+ 
Sbjct: 395 --------------RQEFTPPAGDQFHQLSCFRLISPECEPQLLSRLIWLSGPKGLDIQS 440

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +                 I       +L R Q         + G G     N+Y      
Sbjct: 441 ISSGYWRDLIHH----GLINDLVGWLSLTRDQIAG------VPGIGTARAENIYQQFQST 490

Query: 546 RNISLERFIFSLGIRH--VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
           R     +++ +LG     V     R L +                            +P 
Sbjct: 491 RQKPFSQWLQALGFAQGIVVNSPWRLLQQR--------------------SIAEWGLIPG 530

Query: 604 VGDIIAQAIVEFYQNPRNICAVEAL 628
           +G + A+ I  F  +P      + L
Sbjct: 531 IGPVRAKQITRFLHHPEVQAMADFL 555


>gi|126174866|ref|YP_001051015.1| DNA ligase (NAD(+)) [Shewanella baltica OS155]
 gi|125998071|gb|ABN62146.1| DNA ligase (NAD(+)) [Shewanella baltica OS155]
          Length = 145

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 8/138 (5%)

Query: 10  EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69
           E ++ E A + + +L Q ++ H+  YY    P I DSEYD L +R   +   +P L  + 
Sbjct: 12  EDVTPENASQVMQALSQPLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVA- 70

Query: 70  DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129
             + P  ++GG       ++TH  P LSL+  ++  D   F  R+           + F 
Sbjct: 71  --DSPTQRVGGLALAKFDQITHLKPMLSLDNAFDEADFSAFHKRVTDKVG-----EVSFC 123

Query: 130 LEPKIDGTMITIRYEKGK 147
            EPK+DG  ++I Y  G 
Sbjct: 124 CEPKLDGLAVSILYRNGV 141


>gi|188532209|ref|YP_001906006.1| NAD-dependent DNA ligase LigB [Erwinia tasmaniensis Et1/99]
 gi|188027251|emb|CAO95090.1| Putative NAD-dependent DNA ligase [Erwinia tasmaniensis Et1/99]
          Length = 561

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 126/617 (20%), Positives = 227/617 (36%), Gaps = 91/617 (14%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S  +A  E+S+L+ ++   DD YY+  +  I D +YD L  +       F        P 
Sbjct: 23  SASRADAEISALQAQLEKWDDAYYRRGESPIPDEQYDTLHGKLRQWQRCF-------SPA 75

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
             L K    +  +  KV H +  + ++K+ +   L +++ R    W           ++P
Sbjct: 76  SDLRK---PLLKTDGKVLHPVSHMRVKKLPDKTALTRWMARRSGLW-----------VQP 121

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  +++ Y  G+      RGDG  GED +   R IP IP+ +  ++  +   +GE+Y
Sbjct: 122 KIDGVAVSLLYRDGQLEQMISRGDGVRGEDWTEKARLIPDIPKFIPHSMR-VQVFQGELY 180

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +   D                 N R+A +G L    P  + + + FFV          A 
Sbjct: 181 LKMTDHRQAI--------NGGKNARSAVAGALMAKAPAPLLQQIGFFVWEWPDGPTSLA- 231

Query: 253 GQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
              + L + R LGFP  +    + +    + S+          LP+  DG+V        
Sbjct: 232 ---QRLTETRSLGFPDISAWTHRVDNVDEVESWRERW--FHQPLPFVTDGIVVHS--IPT 284

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
           ++          W+I+ K+A  +A+  +  ++  IGRTG +  V  L PV +G   I+  
Sbjct: 285 RRGSDWLPEFGEWVIAWKYAPPEATAEVRSVEFAIGRTGRVNVVLNLLPVQLGDKRISRV 344

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
           ++                    D+  GD+V +  AG   P++  ++              
Sbjct: 345 SV-----------GSIENWKQTDVIAGDQVSISLAGLGAPRLDKVLWRV----------- 382

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
                  +       P   +  +         C  Q L RL+    +   N+ G G+Q  
Sbjct: 383 -------AERAYPPQPDAAQFNSVSCFHLTPQCRQQFLARLEWLGGKSVLNLVGTGRQTW 435

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
               +S     S+        L + Q      +E + G G+      +      R +  +
Sbjct: 436 QQLIQS----GSMVHIFSWLALTKEQ------LEAVPGIGEQRAQLFWQQFKLSRQLPFK 485

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R++ +LG+  +  +   +L              +N     +       ++P VG  +A  
Sbjct: 486 RWVKALGV-PIPEKALNTLTD------------DNWQPLVSRRLQEWQQLPGVGRKLAGK 532

Query: 612 IVEFYQNPRNICAVEAL 628
           IV F Q       +E L
Sbjct: 533 IVSFLQQREVRQLIEGL 549


>gi|92113642|ref|YP_573570.1| NAD-dependent DNA ligase LigB [Chromohalobacter salexigens DSM
           3043]
 gi|123387489|sp|Q1QXD7|LIGB_CHRSD RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|91796732|gb|ABE58871.1| DNA ligase (NAD+) [Chromohalobacter salexigens DSM 3043]
          Length = 629

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 121/624 (19%), Positives = 219/624 (35%), Gaps = 87/624 (13%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            P   ++ E  + +  +L+  I+  D  YY+  + ++ D  YD+ KRR    A  FP LA
Sbjct: 44  PPCPQMTPEAMQNDYQALDARIARWDRAYYRQGQRLVDDGTYDSAKRRLAHWAECFPLLA 103

Query: 67  RSE-DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
           +   + + P    G +         H +    + K+ + + +  ++ R            
Sbjct: 104 KPSVNTHEPT---GAK--------HHPVAQTGIAKLPDRDAVAGWVAR---------QGD 143

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
               ++PK+DG  +T+ Y  G+   A  RGDG SG+D       I  IP  L  + P ++
Sbjct: 144 HPLWVQPKVDGVAVTLVYRHGRLAAAISRGDGVSGQDWYTKALHIAAIPSHLPADAPPLV 203

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245
            ++GE+Y  +           +      A  R A    L   +           +     
Sbjct: 204 ILQGELYARRTA------HRQSRDGTDGARARIAG---LMARDTLTDREGSTIGLFVWAW 254

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
            +      +          G  V        T   I ++       R  LP+  DG+V K
Sbjct: 255 PNGPDTMPERLETLAGWGFG-DVAEMTHGVATAEDIAAWRQRW--YRHALPFATDGVVVK 311

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
                       +A  P W ++ K+  ++A  R+  ++  +GRTG +  VA LEPV +G 
Sbjct: 312 RG--DRPPGSDWQASPPDWAMAWKYPAREALARVDALEFSVGRTGRIAVVAELEPVLLGD 369

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             +T  +L                    D+R GD+V ++ AG  IP++ +++V  R    
Sbjct: 370 KRVTRVSL-----------GSLAHWRRTDVRPGDQVRLRLAGLTIPQLQEVVVRTRP--- 415

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL-ACSAQQLERLKHFVSRDAFNIE 484
                              ++           C     AC  Q L RL+   S +  +  
Sbjct: 416 ----------------RPQVDAPEADQYDRLSCLRFTPACRDQFLARLEWLGSDEGLDFP 459

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G    +        A  ++   D  TL       T  +E + G G  +          
Sbjct: 460 GIGPATWNQLVD----AGLVKGLLDWRTL------DTAALEALPGVGKKTARAWQRHFAL 509

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
               S  R++ +LG+  V  +      + Y         +  +      DW        +
Sbjct: 510 ADTRSAVRWLRALGVPAVPRQALTDALERYG--------MAGLGTLAPPDWRDYS---GI 558

Query: 605 GDIIAQAIVEFYQNPRNICAVEAL 628
           G+  A  +  F+++      + +L
Sbjct: 559 GETRAMQLTRFFRDTDIRHWLASL 582


>gi|313500944|gb|ADR62310.1| LigB [Pseudomonas putida BIRD-1]
          Length = 566

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 113/634 (17%), Positives = 224/634 (35%), Gaps = 95/634 (14%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + +QA  E++ L   ++  D+ Y++    ++ D  YD  + R + +   F          
Sbjct: 27  NPQQAEAEVAQLRATLARWDEHYHRQGIALVADELYDQSRERLNHLQQCF------AVGT 80

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P       +  +   V H +P   ++K+ + + + +++                  ++P
Sbjct: 81  SPS-----PLASARGPVPHPVPHTGVDKLADRQAVARWMA-----------GKTGVWVQP 124

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +++ Y++G+ V    RGDG  G D S  ++ +  + R L   +   + ++GE+Y
Sbjct: 125 KVDGVAVSLTYQQGRLVQLTSRGDGVHGHDWSRHVKQLGAVTRQLPEAV--DLHLQGELY 182

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +  ND            +   AN R   +G+L R   T                     +
Sbjct: 183 LRLND--------HVQAKAGSANARGTVAGLLARKQLTGEQGNAIGLF---VWGWPHGPE 231

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGFP +     A       + +      RS LP+  DG++ +       
Sbjct: 232 QQAERLAQLARLGFPDSQLYSIAIDTLE-DAAHWREHWYRSALPFATDGVILRQGSR--P 288

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
                +A++P W+ + K+   QA   + D+  ++GRTG +TPV  ++PV +    IT  +
Sbjct: 289 PAERWQAKAPYWIAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHVQPVTLDDRRITQVS 348

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L                    DIR GD+V +  AG  IP++  ++               
Sbjct: 349 L-----------GSLARWQRLDIRPGDQVAISLAGLTIPRLEHVVHRAVE---------- 387

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
                     + +         AH C      C  Q + RL     +    +   G    
Sbjct: 388 ---------RQPITAPAPDQHHAHSCWRASEGCDEQFIARLTWLGGKQGLALPRTGPGTW 438

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
               +    A  +    D   L   +           G   ++  +L  S ++ R+  ++
Sbjct: 439 RRLVE----AGLVTSMTDWLQLDAERLQ------QAPGISRLTAAHLMGSFDEARSRPVD 488

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           +++ +LG+          + K+            +  A  + +      VP +G   +  
Sbjct: 489 QWLRALGVP---------IGKHLP-------LTGDWQALASRNAEQWQTVPGIGAKRSHQ 532

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
           +VEF+           L            + +  
Sbjct: 533 LVEFFAASEVQAIAAQLADAGIEGFRTPPQRIEQ 566


>gi|330989493|gb|EGH87596.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 561

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 112/625 (17%), Positives = 204/625 (32%), Gaps = 94/625 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +AR E+++L+Q+++  DD Y++     I D  YD  +++       F      
Sbjct: 25  CPDWSAAKARSEVTALQQQVAAWDDSYHRQGLSKIPDELYDQARQKLSVWRSCF--AISK 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
            + +     +G           H +P   + K+ + + ++ ++      W          
Sbjct: 83  PESDPLTTAVGPLP--------HPVPHTGVNKLEDEDSVKAWLKGRKDLW---------- 124

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PKIDG  +T+ YEKG+ V A  RGDG  G+D ++  R I  IP+ L     + + ++
Sbjct: 125 -IQPKIDGVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIKAIPQNLF--HRDSLILQ 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+Y    D +               N R+  +G+L                  +G    
Sbjct: 182 GELYWRLTDHIQAIS--------GSVNARSKVAGMLA------RQTISPQQADAIGLFVW 227

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            +  G  +M Q++  L      G                 +      P         + +
Sbjct: 228 DWPNGPTDMAQRLAGLQAMGFEGSEAYTLSLENHVQAARWREHWYRNPLPFATDGVIMRQ 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
                    +A +P W+ + K    QA   +  +   +GR+G +TPV  L PV +    +
Sbjct: 288 GQRPPAQRWQASAPYWIAAWKHPYAQALAEVRKVSFNVGRSGRITPVLELTPVRLDDRTV 347

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  +                     DIR GD+V V  AG  IP++  +I           
Sbjct: 348 SRIS-----------TGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRAAERVEMII 396

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLG 487
                                        C      C +Q   RL     +    + G+G
Sbjct: 397 -------------------PQADDFHELSCWQATPGCESQFRARLIWLSGKKGLALPGVG 437

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
               D   ++            I +L      +  ++ NI GF + S   L  S+   R 
Sbjct: 438 PGTWDKLIENG----------QIESLLDWMTLNHAELANIPGFAERSSAKLLASLQTARE 487

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              + ++ ++G+   G+                    +N               P +G  
Sbjct: 488 RPFQTWLKAIGLPPTGSAT----------------LPDNWQELAGRSVEQWQAEPGIGPG 531

Query: 608 IAQAIVEFYQNPRNICAVEALLKEV 632
            A  +  F+Q P        L  + 
Sbjct: 532 RAAKLRSFFQAPEVQALSHQLQAQG 556


>gi|330967268|gb|EGH67528.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 560

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 115/616 (18%), Positives = 211/616 (34%), Gaps = 101/616 (16%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PD 64
               S  +A  E+++L+Q+I+  DD Y++     I D  YD  +++ +     F    P 
Sbjct: 25  CPDWSHAKASSEITALQQQIAKWDDSYHRQGLSQIPDELYDQSRQKLNDWRSCFAVSTPQ 84

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
               +   GPL               H +P   + K+ + +D++ ++             
Sbjct: 85  ANPLKTATGPL--------------AHPVPHTGVNKLADEKDVKAWLK-----------G 119

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                ++PK+DG  +T+ Y++G+ V A  RGDG  G+D +   + I  IP    L  P  
Sbjct: 120 RTDLWIQPKVDGVAVTLVYDEGRLVQAISRGDGTKGQDWTPQAQLIKAIP--QQLPQPGS 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244
           + ++GE+Y    D +               N R+  +G+L R + +            +G
Sbjct: 178 LILQGELYWRLTDHVQAAS--------GSVNARSKVAGMLARQSISPQQAD------AIG 223

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                +  G  +M Q++  L     N            +   + +      P        
Sbjct: 224 LFVWDWPDGPADMAQRLAGLQALGFNDSVAYTHPLENQAQAADWREHWYRNPLPFATDGV 283

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
            + +         +A +P W+ + K    QA   +  +   IGR+G +TPV  L PV + 
Sbjct: 284 IMRQGQRPPAQRWQASAPYWIAAWKHPYAQALAEVRKVHFNIGRSGKITPVLELTPVRLD 343

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
              ++  +                     DIR GD + V  AG  IP++  ++       
Sbjct: 344 DRTVSRISA-----------GSLPRWEKLDIRPGDHIAVSLAGLTIPRLDGVVSRATERA 392

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A               +            AA  C       +Q   RL     +    + 
Sbjct: 393 AMSVP-----HSDYHDLSCW--------QAAPGC------ESQFRARLVWLSGKKGLALP 433

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G    D   +S   +  +    D  TL      +  ++ NI G  + S   L DS+  
Sbjct: 434 GVGPGTWDKLIESGHISGLL----DWMTL------NHAELANIPGLAERSSAKLLDSLQT 483

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R    + ++ ++G+   G                 A+  +N               P +
Sbjct: 484 ARERPFQTWLKAIGLPPAGN----------------AKLPDNWHDLAERSVAQWQAEPGI 527

Query: 605 GDIIAQAIVEFYQNPR 620
           G   A  +  F+ +P 
Sbjct: 528 GPGRAAKLRAFFHDPH 543


>gi|238784014|ref|ZP_04628030.1| DNA ligase B [Yersinia bercovieri ATCC 43970]
 gi|238715122|gb|EEQ07118.1| DNA ligase B [Yersinia bercovieri ATCC 43970]
          Length = 553

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 116/625 (18%), Positives = 220/625 (35%), Gaps = 97/625 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S E+   E++SL++++   D  Y+Q    ++ D  YD L+ +              
Sbjct: 15  CPEWSAERVSLEVNSLKKQLDKWDAAYHQQGVSLLEDDIYDQLQIKLQGWQ------VCG 68

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+   NK  G       K +H +    L+K+ +  ++  ++ R  + W          
Sbjct: 69  GQPDSTENK--GVPGHG--KFSHPVAHTGLKKLKSETEVANWMLRREKLW---------- 114

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK +    RGDG  G++ S     I  IP  ++   P ++ ++
Sbjct: 115 -VQPKVDGVAVTLVYQNGKLMQLLSRGDGWKGQNWSDKAPFIAAIPHYIAGAPP-LLTLQ 172

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++          +    G     N R++ +G L R + + +   L  F+       +
Sbjct: 173 GELFL-----QMEGHKQAQFGG---VNARSSVAGALMRKSSSPLLAQLGIFIWAWPDGPK 224

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E   +++ +GFP+     +              +  ++ LP+  DG+V + +E
Sbjct: 225 SMV----EKNMRLQDMGFPLTAQYSK-PVTSAKDVARWRERWHQTPLPFVTDGVVIRQEE 279

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W ++ K+  +Q    + DI   IGRTG +T V ++ PV I    I
Sbjct: 280 EPAGRYWQAVPGP--WSVAWKYPPQQQMAEIKDIQFTIGRTGKITVVLQVSPVKIDDKWI 337

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD+V +  AG+ IP++ +++   R      F
Sbjct: 338 RRVNI-----------GSIARWRQWDITTGDQVTITLAGQSIPRLNNVVW--RVNQRHKF 384

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRC--TGGLACSAQQLERLKHFVSRDAFNIEGL 486
           +                 P  G       C       C  Q L RL         N+  +
Sbjct: 385 T-----------------PPDGDKFHQLSCFRNLPYECEPQFLSRLIWLSGPKGLNMHNI 427

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
                            ++      +L   Q      I +I G       ++Y    +  
Sbjct: 428 SGGLWRELIHH----GLVKDLVGWLSLTPDQ------IADIPGISRDRAESIYQQFQRTT 477

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
                +++ +LG   V        +    S   +                 L+  P VG 
Sbjct: 478 QKPFSQWLQALGFPLVTFSNGHWHSLQRKSIAEWR----------------LM--PGVGP 519

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE 631
           + A+ I +F  +P      + L K+
Sbjct: 520 VRAKQINDFLHHPEVQTMADFLSKQ 544


>gi|166226374|sp|A4VRF3|LIGB_PSEU5 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 556

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 130/624 (20%), Positives = 224/624 (35%), Gaps = 98/624 (15%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
              +AR+E+  L+ +++  DD Y++  + ++ D  YD  + + D     F  +     P+
Sbjct: 27  DDARARQEIHQLQAQLAQWDDAYHRRGQSLVDDEIYDQSRAQLDGWRRCF--VGTGAAPD 84

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            PL   GG +        H +    L K+ + + +  +I R    W           ++P
Sbjct: 85  -PLQDAGGPL-------RHPVRQTGLVKLADEQAVATWIARRRDLW-----------IQP 125

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  +T+ Y  G    A  RGDG +G D +A  R +  IP    L +P+ + ++GE+Y
Sbjct: 126 KIDGVAVTLVYRHGALQQAISRGDGLTGHDWTANARRLAAIP--ARLAVPDEVILQGELY 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
              +  +  +           A  R A +     L+     R   F              
Sbjct: 184 WRLDRHVQASH------GSAGARGRVAGAMASNGLDRNTAARIGLF-----VWDWPNGPD 232

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
                L ++  LGFP      Q         ++ E    R  LP+  DG+V + ++    
Sbjct: 233 SMNARLGQLAALGFPDTQAFSQPVETLEHARHWREH-WYRQALPFATDGVVLRQEQRPPA 291

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++       P W  + K+  ++A T + D++ +IGRTG +TP+ +L PV +         
Sbjct: 292 ERW---QAEPHWAAAWKYPLRKALTEVRDVEFRIGRTGRITPLLQLAPVQLDD------- 341

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE--RHPDAQPFSF 430
                 ++ L           D+R GDRV V  AG  IP++  ++     R P A P   
Sbjct: 342 ----RRVRMLSLGSLDRWQALDVRPGDRVAVALAGHSIPQLDSVVWRHTERAPVAAPDPR 397

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
                 C                          C  Q L RL     R    +EG+G   
Sbjct: 398 RYHPDSCWRPAP--------------------GCEQQFLARLVWLGGRQGLALEGVGAGS 437

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                ++               L    +     +E + G G      L  S  + R   L
Sbjct: 438 WQALLEAGLLP----------DLLAWLELDAAALEQVPGIGKARANKLAASFARARQRPL 487

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +++ +LG+       A+ L          A + + + A +   W +      VG   A+
Sbjct: 488 AQWLKALGLP------AKQL--------PPAADWDALAARDLAQWQAEA---GVGPARAK 530

Query: 611 AIVEFYQNPRNICAVEALLKEVSP 634
            +  F++        E L     P
Sbjct: 531 QLQAFFRAAELPALRERLRAVGVP 554


>gi|146284243|ref|YP_001174396.1| NAD-dependent DNA ligase LigB [Pseudomonas stutzeri A1501]
 gi|145572448|gb|ABP81554.1| DNA ligase, NAD-dependent, putative [Pseudomonas stutzeri A1501]
          Length = 597

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 130/624 (20%), Positives = 224/624 (35%), Gaps = 98/624 (15%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
              +AR+E+  L+ +++  DD Y++  + ++ D  YD  + + D     F  +     P+
Sbjct: 68  DDARARQEIHQLQAQLAQWDDAYHRRGQSLVDDEIYDQSRAQLDGWRRCF--VGTGAAPD 125

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            PL   GG +        H +    L K+ + + +  +I R    W           ++P
Sbjct: 126 -PLQDAGGPL-------RHPVRQTGLVKLADEQAVATWIARRRDLW-----------IQP 166

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  +T+ Y  G    A  RGDG +G D +A  R +  IP    L +P+ + ++GE+Y
Sbjct: 167 KIDGVAVTLVYRHGALQQAISRGDGLTGHDWTANARRLAAIP--ARLAVPDEVILQGELY 224

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
              +  +  +           A  R A +     L+     R   F              
Sbjct: 225 WRLDRHVQASH------GSAGARGRVAGAMASNGLDRNTAARIGLF-----VWDWPNGPD 273

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
                L ++  LGFP      Q         ++ E    R  LP+  DG+V + ++    
Sbjct: 274 SMNARLGQLAALGFPDTQAFSQPVETLEHARHWREH-WYRQALPFATDGVVLRQEQRPPA 332

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++       P W  + K+  ++A T + D++ +IGRTG +TP+ +L PV +         
Sbjct: 333 ERW---QAEPHWAAAWKYPLRKALTEVRDVEFRIGRTGRITPLLQLAPVQLDD------- 382

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE--RHPDAQPFSF 430
                 ++ L           D+R GDRV V  AG  IP++  ++     R P A P   
Sbjct: 383 ----RRVRMLSLGSLDRWQALDVRPGDRVAVALAGHSIPQLDSVVWRHTERAPVAAPDPR 438

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
                 C                          C  Q L RL     R    +EG+G   
Sbjct: 439 RYHPDSCWRPAP--------------------GCEQQFLARLVWLGGRQGLALEGVGAGS 478

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                ++               L    +     +E + G G      L  S  + R   L
Sbjct: 479 WQALLEAGLLP----------DLLAWLELDAAALEQVPGIGKARANKLAASFARARQRPL 528

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +++ +LG+       A+ L          A + + + A +   W +      VG   A+
Sbjct: 529 AQWLKALGLP------AKQL--------PPAADWDALAARDLAQWQAEA---GVGPARAK 571

Query: 611 AIVEFYQNPRNICAVEALLKEVSP 634
            +  F++        E L     P
Sbjct: 572 QLQAFFRAAELPALRERLRAVGVP 595


>gi|330874636|gb|EGH08785.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 561

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 115/616 (18%), Positives = 212/616 (34%), Gaps = 100/616 (16%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PD 64
               S  +A  E+++L+Q+I+  DD Y+      I D  YD  +++ +     F    P 
Sbjct: 25  CPDWSHAKASSEITALQQQIAKWDDSYHLQGLSQIPDELYDQSRQKLNDWRSCFAVSTPQ 84

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
               +   GPL              TH +P   + K+ + +D++ ++             
Sbjct: 85  ANPLKTATGPL--------------THPVPHTGVNKLADEKDVKAWLK-----------G 119

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                ++PK+DG  +T+ Y++G+ V A  RGDG  G+D +   + I  IP    L     
Sbjct: 120 RTDLWIQPKVDGVAVTLVYDEGRLVQAISRGDGTKGQDWTPQAQLIKAIP--QQLPQLGS 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244
           + ++GE+Y   +D +               N R+  +G+L R + +            +G
Sbjct: 178 LILQGELYWRLSDHVQAAS--------GSVNARSKVAGMLARQSISPQQAD------AIG 223

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                +  G  +M+Q++  L     N            +   + +      P        
Sbjct: 224 LFVWDWPDGPADMVQRLAGLQTLGFNDSVAYTHPLENHAQAADWREHWYRNPLPFATDGV 283

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
            + +         +A +P W+ + K    QA   +  +   IGR+G +TPV  L PV + 
Sbjct: 284 IMRQGQRPPAQRWQASAPYWIAAWKHPYAQALAEVRKVHFNIGRSGKITPVLELTPVRLD 343

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
              ++  +                     DIR GD + V  AG  IP++  ++       
Sbjct: 344 DRTVSRISA-----------GSLPRWEKLDIRPGDHIAVSLAGLTIPRLDGVVSRATERA 392

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
           A               +            AA  C       +Q   RL     +    + 
Sbjct: 393 AMSVPH----ASDYHDLSCW--------QAAPGC------ESQFRARLVWLSGKKGLALP 434

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G    D   +S   +  +    D  TL      +  ++ NI G  + S   L DS+  
Sbjct: 435 GVGPGTWDKLIESGHISGLL----DWMTL------NHAELANIPGLAERSSAKLLDSLQT 484

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R    + ++ ++G+   G                 A+  +N               P +
Sbjct: 485 ARERPFQTWLKAIGLPPAGN----------------AKLPDNWHDLAERSVAQWQAEPGI 528

Query: 605 GDIIAQAIVEFYQNPR 620
           G   A  +  F+ +P 
Sbjct: 529 GPGRAAKLRAFFHDPH 544


>gi|26991646|ref|NP_747071.1| NAD-dependent DNA ligase LigB [Pseudomonas putida KT2440]
 gi|81439525|sp|Q88D59|LIGB_PSEPK RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|24986741|gb|AAN70535.1|AE016695_9 DNA ligase, NAD-dependent, putative [Pseudomonas putida KT2440]
          Length = 566

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 114/634 (17%), Positives = 224/634 (35%), Gaps = 95/634 (14%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + +QA+ E++ L   ++  D+ Y++    ++ D  YD    R + +   F          
Sbjct: 27  NPQQAKAEVAQLRATLARWDEHYHRQGIALVADELYDQSHERLNHLQQCF------AVGT 80

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P       +  +   V H +P   ++K+ + + + +++T                 ++P
Sbjct: 81  SPS-----PLASARGPVPHPVPHTGVDKLADRQAVARWMT-----------GKTGVWVQP 124

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +++ Y++G+ V    RGDG  G D S  I  +  + R L   +   + ++GE+Y
Sbjct: 125 KVDGVAVSLTYQQGRLVQLTSRGDGVHGHDWSRHIPQLGAVTRQLPEAV--DLHLQGELY 182

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +  ++            +   AN R   +G+L R   T                     +
Sbjct: 183 LRLDE--------HVQAKAGSANARGTVAGLLARKQLTGAQGNAIGLF---VWGWPHGPE 231

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGFP +     A       + +      RS LP+  DG++ +       
Sbjct: 232 QQAERLAQLARLGFPDSQLYSIAIDTLE-DAAHWREHWYRSALPFATDGVILRQGSR--P 288

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
                +A++P W+ + K+   QA   + D+  ++GRTG +TPV  ++PV +    IT  +
Sbjct: 289 PAERWQAKAPYWIAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHVQPVTLDDRRITQVS 348

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L                    DIR GD+V +  AG  IP++  ++               
Sbjct: 349 L-----------GSLARWQRLDIRPGDQVAISLAGLTIPRLEHVVHRAVE---------- 387

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
                     + +         AH C      C  Q + RL     +    +   G    
Sbjct: 388 ---------RQPITAPAPDQHHAHSCWQASEGCDEQFIARLTWLGGKQGLALPRTGPGTW 438

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
               +    A  +    D   L   +           G   ++ T +  S ++ R+   +
Sbjct: 439 RRLVE----AGLVTSMTDWLQLDAERLQ------QAPGISRLTATQMLGSFDQARSRPFD 488

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           +++ +LG+          + K+            N  A  +        VP +G   ++ 
Sbjct: 489 QWLRALGVP---------IGKHLP-------LTGNWQALASRSAGQWQTVPGIGAKRSRQ 532

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
           +VEF+           L +          + +  
Sbjct: 533 LVEFFAASEVQAIAAQLAEAGIEGFRTPPQRIEQ 566


>gi|28867612|ref|NP_790231.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|81840358|sp|Q88AK8|LIGB_PSESM RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|28850847|gb|AAO53926.1| DNA ligase, NAD-dependent, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 561

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 116/616 (18%), Positives = 208/616 (33%), Gaps = 100/616 (16%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PD 64
               S  +A  E+++L+Q+I+  DD Y++     I D  YD  +++ +     F    P 
Sbjct: 25  CPDWSHARASSEITALQQQIASWDDSYHRQGLSQIPDELYDQSRQKLNDWRSCFAVSTPQ 84

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
               +   GPL               H +P   + K+ + +D++ ++             
Sbjct: 85  ANPLKTATGPL--------------AHPVPHTGVNKLADEKDVKAWLK-----------G 119

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                ++PK+DG  +T+ Y++G+ V A  RGDG  G+D +   R I  IP    L  P+ 
Sbjct: 120 RTDLWIQPKVDGVAVTLVYDEGRLVQAISRGDGTQGQDWTPQARLIKAIP--QQLPQPDS 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244
           + ++GE+Y    D +               N R+  +G+L                  +G
Sbjct: 178 LILQGELYWRLTDHVQAAS--------GSVNARSKVAGMLA------RQTISPQQADAIG 223

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                +  G  +M Q++  L     N            +   + +      P        
Sbjct: 224 LFVWDWPDGPADMAQRLAGLQAMGFNHSVAYTHPLENHAQAADWREHWYRNPLPFATDGV 283

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
            + +         +A +P W+ + K    QA   +  +   IGRTG + PV  L PV + 
Sbjct: 284 IMRQGQRPPAQRWQASAPYWIAAWKHPYAQALAEVRKVHFNIGRTGKIAPVLELTPVRLD 343

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
              ++  +                     DIR GD + V  AG  IP++  ++       
Sbjct: 344 DRTVSRISA-----------GSLSRWEKLDIRPGDHIAVSLAGLTIPRLDGVVSRAAERA 392

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                  S                     AA  C       +Q   RL     +    + 
Sbjct: 393 EMSVPHASDYHESSC------------WQAAPGC------ESQFRARLVWLSGKKGLALP 434

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G    D   +S   +  +    D  TL      +  ++ NI G  + S   L DS+  
Sbjct: 435 GVGPGTWDKLIESGHISGLL----DWMTL------NHAELANIPGLAERSSDKLLDSLQT 484

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R    + ++ ++G+   G                 A+  +N               P +
Sbjct: 485 ARERPFQTWLKAIGLPPAGN----------------AKLPDNWHDLAERSVEQWQAEPGI 528

Query: 605 GDIIAQAIVEFYQNPR 620
           G   A  +  F+Q+P 
Sbjct: 529 GPGRAAKLRAFFQDPH 544


>gi|312963566|ref|ZP_07778047.1| DNA ligase B [Pseudomonas fluorescens WH6]
 gi|311282075|gb|EFQ60675.1| DNA ligase B [Pseudomonas fluorescens WH6]
          Length = 553

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 116/620 (18%), Positives = 224/620 (36%), Gaps = 93/620 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E AR ++  L +++   DD Y++  +  + D  YD  ++R             ++    
Sbjct: 22  PEDARTQIHELAEQVRLWDDSYHRLGQSPVSDELYDQARQRLADWRPC-----AAQPATV 76

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P    G  +  S   + H +    LEK+ + + +  ++      W           ++PK
Sbjct: 77  P----GNPLTTSRGTLPHPVAHTGLEKLRDEQAVGTWLDTHKEVW-----------IQPK 121

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y +G+      RGDG  G+D SA  R IP I + L   +   + ++GE+Y 
Sbjct: 122 VDGVAVTLMYRQGRLSRVISRGDGTLGQDWSASARKIPGIVQQLPEPL--DLVLQGELYW 179

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
             +                  N R+  +G++ R   +D          G+G     + +G
Sbjct: 180 RLHA--------HVQSASGGLNARSKVAGLMNRRQLSDTDAA------GIGLFVWAWPEG 225

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
                +++  L        ++ +     ++     ++     P         + +     
Sbjct: 226 PTGFTERLATLARLGFVDSQRYSQPVQDLTDAMHWRAYWYNHPLPFASDGVVLHQAQHAP 285

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
               +A +P W ++ K+   +A   +  +  ++GRTG +TP+  L+PV++    I+  + 
Sbjct: 286 AQRWQANAPYWAVAWKYPATKALALVRKVHFKVGRTGRITPILELQPVHLDDRQISRVSA 345

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DIR GD+V +  AG+VIP++ ++I+               
Sbjct: 346 -----------GSLKRWQALDIRPGDQVSISLAGQVIPRLDEVILRN------------- 381

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
                     DL     +   A  C      C  Q L RL          +  +G++  +
Sbjct: 382 ------ATRVDLPVPDPRNFHALSCWQLDPGCEEQLLARLSWLSGNQGLALPHMGRETWN 435

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +    A  I    D  TL         ++ NI G GD+S   + DSI   R     +
Sbjct: 436 VLIQ----AGLIAGFLDWLTLDA------AELANIDGLGDLSRARVLDSIRSARQRPFAQ 485

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           ++ +LG+                   N   +   +IA +   W     +  +G   A  +
Sbjct: 486 WLKALGVPPAARN-------------NLEGDWQTLIARDTQAWQ---AIDGIGPGRAAQL 529

Query: 613 VEFYQNPRNICAVEALLKEV 632
             F+++P+     E L    
Sbjct: 530 SAFFRDPQIQALAETLRMAG 549


>gi|330891383|gb|EGH24044.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. mori str.
           301020]
          Length = 561

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 108/619 (17%), Positives = 198/619 (31%), Gaps = 94/619 (15%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR E+++L+Q+++  DD Y++     I D  YD  +++       F       + +  
Sbjct: 31  AKARSEVTALQQQVATWDDSYHRQGLSKIPDELYDQARQKLSVWRSCF--AISKPESDPL 88

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +G           H +P   + K+ + + ++ ++      W           ++PKI
Sbjct: 89  TTAVGPLP--------HPVPHTGVNKLEDEDSVKAWLKGRKDLW-----------IQPKI 129

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +T+ YEKG+ V A  RGDG  G+D ++  R I  IP    L   + + ++GE+Y  
Sbjct: 130 DGVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIKAIP--QRLPQHDSLILQGELYWR 187

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
             D +                   + +   +                 +G     +  G 
Sbjct: 188 LTDHIQAIS--------------GSVNARSKVAGMPARQTISPQQADAIGLFVWDWPNGP 233

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            +M Q++  L      G                 +      P         + +      
Sbjct: 234 GDMAQRLAGLQAMGFEGSEAYTHSLENHVQAARWREHWYRNPLPFATDGVIMRQGQRPPM 293

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
              +A +P W+ + K    QA   +  +   IGR+G +TPV  L PV +    ++  +  
Sbjct: 294 QRWQASAPYWIAAWKHPYAQALAEVRKVSFNIGRSGRITPVLELTPVRLDDRTVSRIS-- 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
                              DIR GD+V V  AG  IP++  +I                 
Sbjct: 352 ---------TGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRAAERVEMII------ 396

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                                  C      C +Q   RL     +    + G+G    D 
Sbjct: 397 -------------PQADDFHELSCWQATPGCESQFRARLIWLSGKKGLALPGVGPGTWDK 443

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++            I +L      +  ++ NI GF + S   L  S+   R    + +
Sbjct: 444 LIENG----------QIESLLDWMTLNHAELANIPGFAERSSAKLLASLQTARERPFQTW 493

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           + ++G+   G+                    +N               P +G   A  + 
Sbjct: 494 LKAIGLPPTGSAT----------------LPDNWQELAARSVEQWQAEPGIGPGRAAKLR 537

Query: 614 EFYQNPRNICAVEALLKEV 632
            F+Q P        L  + 
Sbjct: 538 SFFQAPEVQALSHQLQAQG 556


>gi|213967844|ref|ZP_03395991.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1]
 gi|301382481|ref|ZP_07230899.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062268|ref|ZP_07253809.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tomato K40]
 gi|302132915|ref|ZP_07258905.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213927620|gb|EEB61168.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1]
          Length = 563

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 115/616 (18%), Positives = 208/616 (33%), Gaps = 100/616 (16%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PD 64
               S  +A  E+++L+Q+I+  DD Y++     I D  YD  +++ +     F    P 
Sbjct: 27  CPDWSHARASSEITALQQQIASWDDSYHRQGLSQIPDELYDQSRQKLNDWRSCFAVSTPQ 86

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
               +   GPL               H +P   + K+ + +D++ ++             
Sbjct: 87  ANPLKTATGPL--------------AHPVPHTGVNKLADEKDVKAWLK-----------G 121

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                ++PK+DG  +T+ Y++G+ V A  RGDG  G+D +   R I  IP    L  P+ 
Sbjct: 122 RTDLWIQPKVDGVAVTLVYDEGRLVQAISRGDGTQGQDWTPQARLIKAIP--QQLPQPDS 179

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244
           + ++GE+Y    D +               N R+  +G+L                  +G
Sbjct: 180 LILQGELYWRLTDHVQAAS--------GSVNARSKVAGMLA------RQTISPQQADAIG 225

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                +  G  +M Q++  L     N            +   + +      P        
Sbjct: 226 LFVWDWPDGPADMAQRLAGLQALGFNHSVAYTHPLENHAQAADWREHWYRNPLPFATDGV 285

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
            + +         +A +P W+ + K    QA   +  +   IGRTG + PV  L PV + 
Sbjct: 286 IMRQGQRPPAQRWQASAPYWIAAWKHPYAQALAEVRKVHFNIGRTGKIAPVLELTPVRLD 345

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
              ++  +                     DIR GD + V  AG  IP++  ++       
Sbjct: 346 DRTVSRISA-----------GSLSRWEKLDIRPGDHIAVSLAGLTIPRLDGVVSRAAERA 394

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                           +            AA  C       +Q   RL     +    + 
Sbjct: 395 EMSVPH----ASDYHELSCW--------QAAPGC------ESQFRARLVWLSGKKGLALP 436

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G    D   +S   +  +    D  TL      +  ++ NI G  + S   L DS+  
Sbjct: 437 GVGPGTWDKLIESGHISGLL----DWMTL------NHAELANIPGLAERSSDKLLDSLQT 486

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R    + ++ ++G+   G                 A+  +N               P +
Sbjct: 487 ARERPFQTWLKAIGLPPAGN----------------AKLPDNWHDLAERSAQQWQAEPGI 530

Query: 605 GDIIAQAIVEFYQNPR 620
           G   A  +  F+Q+P 
Sbjct: 531 GPGRAAKLRAFFQDPH 546


>gi|310765950|gb|ADP10900.1| NAD-dependent DNA ligase LigB [Erwinia sp. Ejp617]
          Length = 560

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 118/623 (18%), Positives = 215/623 (34%), Gaps = 89/623 (14%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S  +A  E+S+LE ++   DD YY+  +  I D  YD L  +       F        P 
Sbjct: 23  SASRADAEISALEAQLKKWDDAYYRRGESQIPDERYDTLHGKLQQWQRCF-------SPA 75

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
             L +    +  +  KV H +    ++K+ +   + +++ +    W           ++P
Sbjct: 76  SDLRQ---PLLKTDGKVLHPVSHTGVKKLSDKAAVARWMEKRDGLW-----------IQP 121

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +T+ Y  G+ V    RGDG  GED +A  R IP IP+ +    P +   +GE+Y
Sbjct: 122 KVDGVAVTLLYRDGRLVQMISRGDGVKGEDWTAKARQIPAIPKSIP-RFPAVQVFQGELY 180

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +   D     D           + R+  +G L    P+ + + +  FV          A+
Sbjct: 181 LKMTDHQQATD--------GGKSARSIVAGALMAKAPSTMLQRVGIFVWAWPDGPNSIAQ 232

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
               +            + V   +   G    +          P+  DG+V         
Sbjct: 233 RLTGIRALGFPDISNWTHRVENVDEVEGWRERWFHQAL-----PFATDGIVVHSIPTRQG 287

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
                      W I+ K+   + ++ +  ++  IGRTG +  V  L PV +    ++   
Sbjct: 288 TDWLPELGD--WAIAWKYPPPEVTSEVRSVEFAIGRTGRINAVLNLLPVQLDDKRVSRVN 345

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           +                    D+  GD V +  AG  +P++          D   +    
Sbjct: 346 I-----------GSIEHWKQTDVIAGDLVSISLAGLGVPRM----------DKVIWRVKE 384

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
                        +    +L A         C  Q L RL+   S+   N+ G G+Q   
Sbjct: 385 RVLPPLPDATHFNSLSCFRLTAQ--------CRQQFLARLEWLSSKPVLNLSGAGRQTWQ 436

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +    A S+        L   Q  +      + G G+      +      R +  +R
Sbjct: 437 QLIQ----AGSMAHIFSWLALSEEQLKA------VPGIGEQRAHFFWQQFRLSRQLPFKR 486

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           ++ +LG+  +      +L                +++H+  DW  L   P VG  +A+ I
Sbjct: 487 WVKALGV-PIPERAMNTLTD---------DNWQQLLSHSLQDWQQL---PGVGQTLARKI 533

Query: 613 VEFYQNPRNICAVEALLKEVSPS 635
             + +       ++ L   V  S
Sbjct: 534 FSYLRQQEVRQLIDVLEASVVLS 556


>gi|327482626|gb|AEA85936.1| NAD-dependent DNA ligase LigB [Pseudomonas stutzeri DSM 4166]
          Length = 553

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 131/624 (20%), Positives = 224/624 (35%), Gaps = 98/624 (15%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
              +AR+E+  L+ +++  DD Y++  + ++ D  YD  + + D     F  +     P+
Sbjct: 24  DDARARQEIHQLQAQLAQWDDAYHRRGQSLVDDEIYDQSRAQLDGWRRCF--VGTGAAPD 81

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            PL   GG +        H I    L K+ + + +  +I R    W           ++P
Sbjct: 82  -PLQDAGGPL-------RHPIRQTGLVKLADEQAVATWIARRRDLW-----------IQP 122

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  +T+ Y  G    A  RGDG +G+D +A  R +  IP    L +P+ + ++GE+Y
Sbjct: 123 KIDGVAVTLVYRHGALQQAISRGDGLTGQDWTANARRLAAIP--ARLAVPDEVILQGELY 180

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
              +  +  +           A  R A +     L+     R   F              
Sbjct: 181 WRLDRHVQASH------GSAGARGRVAGAMASNGLDRDTAARIGLF-----VWDWPNGPD 229

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
                L ++  LGFP      Q         ++ E    R  LP+  DG+V + ++    
Sbjct: 230 SMNARLGQLAALGFPDTQAFSQPVETLEHARHWREH-WYRQALPFATDGVVLRQEQRPPA 288

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           ++       P W  + K+  ++A T + D++ +IGRTG +TP+ +L PV +         
Sbjct: 289 ERW---QAEPHWAAAWKYPLRKALTEVRDVEFRIGRTGRITPLLQLAPVQLDD------- 338

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE--RHPDAQPFSF 430
                 ++ L           D+R GDRV V  AG  IP++  ++     R P A P   
Sbjct: 339 ----RRVRTLSLGSLDRWQALDVRPGDRVAVALAGHSIPQLDSVVWRHTERAPVAAPDPR 394

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
                 C                          C  Q L RL     R    +EG+G   
Sbjct: 395 RYHPDSCWRPAP--------------------GCDQQFLARLVWLGGRQGLALEGVGAGS 434

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
                ++               L    +     +E + G G      L  S  + R   L
Sbjct: 435 WQALLEAGLLP----------DLLAWLELDAAALEQVPGIGKARANKLAASFARARQRPL 484

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +++ +LG+       A+ L          A + + + A +   W +      VG   A+
Sbjct: 485 AQWLKALGLP------AKQL--------PPAADWDALAARDLAQWQAEA---GVGPARAK 527

Query: 611 AIVEFYQNPRNICAVEALLKEVSP 634
            +  F+         E L     P
Sbjct: 528 QLQAFFGAAELPALRERLRAVGVP 551


>gi|291619488|ref|YP_003522230.1| YicF [Pantoea ananatis LMG 20103]
 gi|291154518|gb|ADD79102.1| YicF [Pantoea ananatis LMG 20103]
          Length = 568

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 128/627 (20%), Positives = 220/627 (35%), Gaps = 91/627 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A +  +A  E++ L+Q++   D  Y+Q  + ++ D++YD+L++R +     F   A  
Sbjct: 2   CPAWTSARAVNEIAHLQQQLRQWDKAYFQQGRSLVSDADYDSLQQRLNHWQRCFTQAADE 61

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P  P      E       V H+              ++K   R  R            
Sbjct: 62  YVPALP------EDGTQWHPVAHT-------------GVKK--VRDKRALGYWMQARNDL 100

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PKIDG  +++ Y +GK V    RGDG  GE   A  R IP IP  +  +    I ++
Sbjct: 101 WVQPKIDGVAVSLIYRQGKLVSLISRGDGLHGEQWLAKARHIPAIP-SVIDSQQGSIVLQ 159

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+      FL +     AV     A  R A + + +  +P      +  +    G  S 
Sbjct: 160 GEL------FLKMTGHQQAVDGGRNARARVAGAMMSQADSPLLAQLGIFIWSWPDGPASM 213

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L ++   GF + +   Q        +     +   + LP+  DG+V     
Sbjct: 214 P------ERLARLSSWGFDLASHWTQ-PVQDEEDAASWRERWFHAPLPFVTDGIVVHQAA 266

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               K          W I+ K+   + S+ +  +D  IGRTG +  V  ++PV +    +
Sbjct: 267 RPAGKYWQPGEGE--WAIAWKYQPPEVSSEVRSVDFSIGRTGKVAVVLNIQPVQLDDKTV 324

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                   +D+  GD+V V  AG+ IP++  +I      D    
Sbjct: 325 RRVNI-----------GSLKRWREQDVIAGDQVTVSLAGQGIPRLERVIWRVAQRD---- 369

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                             P   +      C T    C  Q L RL     +   NI G+ 
Sbjct: 370 ---------------YPEPPGSEHFTHLSCYTLTPDCHRQLLARLSWLSQKFVLNIPGVQ 414

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +        +      I       T+   Q  +        G        ++      R 
Sbjct: 415 RSTWQRLLDT----GCITHLFSWLTITPEQIAAA------AGISSERAQQIWHRFELTRQ 464

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R++ +LGI  +  +  R+LA          +E   ++A +   W +L   P VG  
Sbjct: 465 QPLRRWVNALGIA-LPQKALRALAD---------KEWEPLLARDVQTWQAL---PGVGAR 511

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP 634
            A+ I   +Q+      +  L ++  P
Sbjct: 512 RAERIAAQFQDAGLRKLITFLQQQGIP 538


>gi|257482942|ref|ZP_05636983.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331011813|gb|EGH91869.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 561

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 111/619 (17%), Positives = 202/619 (32%), Gaps = 94/619 (15%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR E+++L+Q+++  DD Y++     I D  YD  +++       F       + +  
Sbjct: 31  AKARSEVTNLQQQMAAWDDSYHRQGLSKIPDELYDQARQKLSVWRSCF--AISKPESDPL 88

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +G           H +P   + K+ + + ++ ++      W           ++PKI
Sbjct: 89  TTAVGPLP--------HPVPHTGVNKLEDEDSVKAWLKGRNDLW-----------IQPKI 129

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +T+ YEKG+ V A  RGDG  G+D ++  R I  IP    L   + + ++GE+Y  
Sbjct: 130 DGVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIKAIP--QRLPHHDSLILQGELYWR 187

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
             D +               N R+  +G+L                  +G     +  G 
Sbjct: 188 LTDHIQATS--------GSVNARSKVAGMLA------RQTISPQQADAIGLFVWDWPNGP 233

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            +M Q++  L      G                 +      P         + +      
Sbjct: 234 TDMAQRLSGLQAMGFEGSEAYTLSLENHVQAARWREHWYRNPLPFATDGVIMRQGQRPPA 293

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
              +A +P W+ + K    QA   +  +   +GR+G +TPV  L PV +    ++  +  
Sbjct: 294 QRWQASAPYWIAAWKHPYAQALAEVRKVSFNVGRSGRITPVLELTPVRLDDRTVSRIS-- 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
                              DIR GD+V V  AG  IP++  +I                 
Sbjct: 352 ---------TGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRAAERVEMII------ 396

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                                  C      C +Q   RL     +    + G+G    D 
Sbjct: 397 -------------PQADDFHELSCWQATPGCESQFRARLIWLSGKKGLALPGVGPGTWDK 443

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++            I +L      +  ++ NI GF + S   L  S+   R    + +
Sbjct: 444 LIENG----------QIESLLDWMTLNHAELANIPGFAERSSAKLLASLQTARERPFQTW 493

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           + ++G+   G+                    +N               P +G   A  + 
Sbjct: 494 LKAIGLPPTGSAT----------------LPDNWQELAGRSVEQWQAEPGIGPGRAAKLR 537

Query: 614 EFYQNPRNICAVEALLKEV 632
            F+Q P        L  + 
Sbjct: 538 SFFQAPEVQALSHQLQAQG 556


>gi|77461491|ref|YP_350998.1| NAD-dependent DNA ligase LigB [Pseudomonas fluorescens Pf0-1]
 gi|123772014|sp|Q3K5E7|LIGB_PSEPF RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|77385494|gb|ABA77007.1| putative exported DNA-ligase protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 558

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 133/627 (21%), Positives = 222/627 (35%), Gaps = 95/627 (15%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
                +  +A  E+ +L+Q+I   DD Y++  + +I D  YD  + R +     F     
Sbjct: 23  DCPDWAAARASSEVVALQQQIDRWDDAYHREGRSVIADELYDQSRLRLNQWRQCF----N 78

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P  PL    G        V H +    L+K+ +  D+  ++      W         
Sbjct: 79  LPSPPEPLRTASGP-------VAHPVAHTGLDKLHDAADIATWLRDRQNVW--------- 122

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
             ++PK+DG  +T+ Y  G+   A  RGDG  G+D +A  + I  IP+ L+      + V
Sbjct: 123 --VQPKVDGVAVTLIYRDGRLHQAISRGDGVRGQDWTASAKKIGAIPQQLTQPQ--DLLV 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247
           +GE+Y   N             R   AN R   +G+L R +                   
Sbjct: 179 QGELYWRLNG--------HMQARAGSANARATVAGLLGRKDLGAEHAAGIGLF---VWDW 227

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               +   E +  +   GFP      QA       + +       S LP+  DG+V +  
Sbjct: 228 PHGPRDLPERITALTQFGFPTTVPYTQAVASLN-DAQHWRDHWYHSPLPFATDGVVLRQS 286

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                     +AR P W ++ K+   QA   +  +  +IGRTG +TPV  L PV +    
Sbjct: 287 LR--PPAERWQARPPYWAVAWKYPFAQALADVRKVHFKIGRTGRITPVLELSPVMLDD-- 342

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
                      IK +  S        DIR GD+V +  AG  IP++  +           
Sbjct: 343 ---------RQIKRVSVSSLRRWQELDIRPGDQVAISLAGLTIPRLDSV----------- 382

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL-ACSAQQLERLKHFVSRDAFNIEGL 486
                   + +S    DLN        A  C      C +Q L RL     +    +  +
Sbjct: 383 --------VLRSTERADLNVPLASDFHALSCWQPTPGCESQFLARLTWLSGKQGLALPHV 434

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+   +   ++      +    D  TL         ++ NI G G+ S   L  S +  R
Sbjct: 435 GRGTWEKLLETGRLNSLL----DWLTL------DGPELANIAGLGERSSARLLHSFHSAR 484

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
                +++ +LG+   G                 A     +   N + W +      +G 
Sbjct: 485 QRPFAQWLKALGLPPTGQAT-------------LADSWQALAQRNTEQWQAEA---GIGP 528

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS 633
             A  +  F+++P+ +   E L     
Sbjct: 529 GRAAQLSAFFRDPQVLTLSETLQAAGV 555


>gi|331014918|gb|EGH94974.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 561

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 114/616 (18%), Positives = 206/616 (33%), Gaps = 100/616 (16%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PD 64
               S  +A  E+++L+Q+I+  DD Y++     I D  YD  +++ +     F    P 
Sbjct: 25  CPDWSHARASSEITALQQQIASWDDSYHRQGLSQIPDELYDQSRQKLNDWRSCFAVSTPQ 84

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
               +   GPL               H +P   + K+ + +D++ ++             
Sbjct: 85  ANPLKTATGPL--------------AHPVPHTGVNKLADEKDVKAWLK-----------G 119

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                ++PK+DG  +T+ Y +G+   A  RGDG  G+D +   R I  IP    L  P+ 
Sbjct: 120 RTDLWIQPKVDGVAVTLVYHEGRLAQAISRGDGTQGQDWTPQARLIKAIP--QQLPQPDS 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244
           + ++GE+Y    D +               N R+  +G+L                  +G
Sbjct: 178 LILQGELYWRLTDHVQAAS--------GSVNARSKVAGMLA------RQTISPQQADAIG 223

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                +  G  +M Q++  L     N            +   + +      P        
Sbjct: 224 LFVWDWPDGPADMAQRLAGLQALGFNHSVAYTHPLENHAQAADWREHWYRNPLPFATDGV 283

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
            + +         +A +P W+ + K    QA   +  +   IGRTG + PV  L PV + 
Sbjct: 284 IMRQGQRPPAQRWQASAPYWIAAWKHPYAQALAEVRKVHFNIGRTGKIAPVLELTPVRLD 343

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
              ++  +                     DIR GD + V  AG  IP++  ++       
Sbjct: 344 DRTVSRISA-----------GSLSRWEKLDIRPGDHIAVSLAGLTIPRLDGVVSRAAERA 392

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                           +            AA  C       +Q   RL     +    + 
Sbjct: 393 EMSVPH----ASDYHELSCW--------QAAPGC------ESQFRARLVWLSGKKGLALP 434

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G    D   +S   +  +    D  TL      +  ++ NI G  + S   L DS+  
Sbjct: 435 GVGPGTWDKLIESGHISGLL----DWMTL------NHAELANIPGLAERSSDKLLDSLQT 484

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R    + ++ ++G+   G                 A+  +N               P +
Sbjct: 485 ARERPFQTWLKAIGLPPAGN----------------AKLPDNWHDLAERSAQQWQAEPGI 528

Query: 605 GDIIAQAIVEFYQNPR 620
           G   A  +  F+Q+P 
Sbjct: 529 GPGRAAKLRAFFQDPH 544


>gi|259906726|ref|YP_002647082.1| NAD-dependent DNA ligase LigB [Erwinia pyrifoliae Ep1/96]
 gi|224962348|emb|CAX53803.1| NAD-dependent DNA ligase [Erwinia pyrifoliae Ep1/96]
 gi|283476511|emb|CAY72326.1| putative NAD-dependent DNA ligase [Erwinia pyrifoliae DSM 12163]
          Length = 560

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 117/620 (18%), Positives = 218/620 (35%), Gaps = 89/620 (14%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S  +A  E+S+LE ++   DD YY+  +  I D  YD L  +       F        P 
Sbjct: 23  SASRADAEISALEAQLKKWDDAYYRRGESQIPDERYDTLHGKLQQWQRCF-------SPA 75

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
             L +    +  +  KV H +    ++K+ +   + +++ +    W           ++P
Sbjct: 76  SDLRQ---PLLKTDGKVLHPVSHTGVKKLSDKAAVARWMEKRDGLW-----------IQP 121

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +T+ Y  G+ V    RGDG  GED +A  R IP IP+ +    P +   +GE+Y
Sbjct: 122 KVDGVAVTLLYRDGRLVQMISRGDGVKGEDWTAKARQIPAIPKSIP-RFPAVQVFQGELY 180

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +   D     D           + R+  +G L    P+ + + +  FV          A+
Sbjct: 181 LKMTDHQQATD--------GGKSARSIVAGALMAKAPSTMLQRVGIFVWAWPDGPNSIAQ 232

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
               +            + V   +   G    +          P+  DG+V         
Sbjct: 233 RLTGIRALGFPDISNWTHRVENVDEVEGWRERWFHQAL-----PFATDGIVVHSIPTRQG 287

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
                      W I+ K+   + ++ +  ++  IGRTG +  V  L PV +    ++   
Sbjct: 288 TDWLPELGD--WAIAWKYPPPEVTSEVRSVEFAIGRTGRINAVLNLLPVQLDDKRVSRVN 345

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           +                    D+  GD V +  AG  +P++  +I               
Sbjct: 346 I-----------GSIEHWKQTDVIAGDLVSISLAGLGVPRMDKVIW-------------- 380

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
              + +  +    +      ++  R T    C  Q L RL+   S+   N+ G G+Q   
Sbjct: 381 --RVKERVLPPLPDATHFNSLSCFRLTPQ--CRQQFLARLEWLSSKPVLNLSGAGRQTWQ 436

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +    A S+        L   Q  +      + G G+      +      R +  +R
Sbjct: 437 QLIQ----AGSMTHIFSWLALSEEQLKA------VPGIGEQRAHFFWQQFRLSRQLPFKR 486

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           ++ +LG+  +      +L                +++H+  DW  L   P VG  +A+ I
Sbjct: 487 WVKALGV-PIPERAMNTLTD---------DNWQQLLSHSLQDWQQL---PGVGQTLARKI 533

Query: 613 VEFYQNPRNICAVEALLKEV 632
             + +       ++ L   V
Sbjct: 534 FSYLRQQEVRQLIDVLEASV 553


>gi|148550043|ref|YP_001270145.1| NAD-dependent DNA ligase LigB [Pseudomonas putida F1]
 gi|257096559|sp|A5WA01|LIGB_PSEP1 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|148514101|gb|ABQ80961.1| DNA ligase (NAD(+)) [Pseudomonas putida F1]
          Length = 566

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 116/638 (18%), Positives = 226/638 (35%), Gaps = 95/638 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S +QA+ E++ L   ++  D+ Y++    ++ D  YD  + R + +   F      
Sbjct: 23  CPQWSPQQAKAEVAQLRATLARWDEHYHRQGIALVADELYDQSRERLNHLQQCF------ 76

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                P       +  +   V H +P   ++K+ + + + +++                 
Sbjct: 77  AVGTSPS-----PLASARGPVPHPVPHTGVDKLADRQAVARWMA-----------GKSGV 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +++ Y++G+ V    RGDG +G D S  I  +  + R L   +   + ++
Sbjct: 121 WVQPKVDGVAVSLTYQQGRLVQLTSRGDGVNGHDWSRHIPQLDAVTRQLPEAL--DLHLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+Y+  +D            +   AN R   +G+L R   T                  
Sbjct: 179 GELYLRLSD--------HVQAKAGSANARGTVAGLLARKQLTGAQGNAIGLF---VWGWP 227

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              + Q E L ++  LGFP +     A       + +      RS LP+  DG++ +   
Sbjct: 228 HGPEQQAERLAQLARLGFPDSQLYSIAIDTLE-DAAHWREHWYRSALPFATDGVILRQSS 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
                    +A++P W+ + K+   QA   + D+  ++GRTG +TPV  L PV +    I
Sbjct: 287 R--PPAERWQAKAPYWIAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHLLPVTLDDRRI 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           T  +L                    DIR GD+V +  AG  IP++  ++       A   
Sbjct: 345 TQVSL-----------GSLARWHTLDIRPGDQVAISLAGLTIPRLEQVVHRTVERQAVA- 392

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLG 487
                                     AH C      C  Q + RL     +    +   G
Sbjct: 393 ------------------APAPDRYHAHSCWQASEGCDEQFIARLTWLGGKQGLALPRTG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
                   +    A  +    D   L   +           G   ++  +L  S ++ R+
Sbjct: 435 PGTWRRLVE----AGLVTSMTDWLQLDAERLQ------QAPGISRLTAAHLLGSFDEARS 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
              ++++ +LG+          + K+         +   + + +   W +   VP +G  
Sbjct: 485 RPFDQWLRALGVP---------IGKHLP----LTGDWQALASRSAGHWQT---VPGIGAK 528

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
            ++ +VEF+           L +          + +  
Sbjct: 529 RSRQLVEFFAASEVQAIAAQLAETGIEGFRPPPQRIEQ 566


>gi|213024616|ref|ZP_03339063.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 130

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 13/140 (9%)

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A  LA Y+ + +                   L +VP VG ++A  +  F+    N   +
Sbjct: 1   TAAGLAAYFGTLEALQAAT----------IDELQKVPDVGIVVATHVFNFFAEESNRDVI 50

Query: 626 EALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             LL E       +  + + + S    K +V TG+L ++ R  A+  +  LGA V+  +S
Sbjct: 51  GQLLAEGVHWPAPVVINAQEIDSPFAGKTVVLTGSLSQMSRDDAKARLVALGAKVAGSVS 110

Query: 683 RKTDIIIVGDNPGSKLEKAQ 702
           +KTD++I G+  GSKL KAQ
Sbjct: 111 KKTDLVIAGEAAGSKLAKAQ 130


>gi|312170612|emb|CBX78875.1| putative NAD-dependent DNA ligase [Erwinia amylovora ATCC BAA-2158]
          Length = 554

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 119/621 (19%), Positives = 218/621 (35%), Gaps = 91/621 (14%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S  +A  E+++L+ ++   D+ YY+  +  + D  YD L  +       F        P 
Sbjct: 23  SPSRADAEIAALKAQLEKWDEAYYRRGEAQVPDERYDTLHDKLQQWQRCF-------SPA 75

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
             L +    +  +  KV H +    ++K      + +++ +    W           ++P
Sbjct: 76  SDLRQ---PLLKTDGKVLHPVSHTGVKKASGKAAVARWMEKRDGLW-----------IQP 121

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +T+ Y  G+ V    RGDG  GED +A  R IP IP+ +    P +   +GE+Y
Sbjct: 122 KVDGVAVTLLYRDGRLVQMISRGDGVKGEDWTAKARQIPDIPKSIP-RFPAMQVFQGELY 180

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +   D    ND           + R+  +G L     + + + +  FV          AK
Sbjct: 181 LKMTDHQQAND--------GGKSARSLVAGALMAKAASTVLQRVGIFVWAWPDGPNSIAK 232

Query: 253 GQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                   +R LGFP   +   +      +  +          LP+  DG+V        
Sbjct: 233 RLTG----IRALGFPDIKDWTHRVENVDEVEGWRERW--FHQRLPFATDGIVVHGMPTRQ 286

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
                       W I+ K+   + ++ +  ++  IGRTG +  V  L PV +    ++  
Sbjct: 287 GTDWLPERGD--WAIAWKYPPPEVTSEVRSVEFAIGRTGRINAVLNLLPVQLDDKRVSRV 344

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
            +                    D+  GD+V +  AG  +P++  +I   +    +     
Sbjct: 345 NI-----------GSIEHWKQTDVIAGDQVSISLAGMGVPRMDKVIWRVK---ERVLPPL 390

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
                  S     L PK               C  Q L RL+   S+   N+ G G+Q  
Sbjct: 391 PDATHFNSLSCFHLTPK---------------CRQQFLARLEWLSSKPVLNLSGAGRQTW 435

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
               +S   A           L   +  +      + G G+      +      R +  +
Sbjct: 436 QQLMQSGSMA----HIFSWLALSEEELKA------VPGIGEQRAHFFWHQFRLSRQLPFK 485

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R++ +LG+  +      +L                +++H+  DW  L   P VG  +A+ 
Sbjct: 486 RWVKALGV-PIPERAMNTLTD---------DNWQQLLSHSLQDWQQL---PGVGQTLARK 532

Query: 612 IVEFYQNPRNICAVEALLKEV 632
           I  + Q       ++ L    
Sbjct: 533 IFSYLQQQEVRQLIDVLEAPG 553


>gi|292486544|ref|YP_003529410.1| putative NAD-dependent DNA ligase [Erwinia amylovora CFBP1430]
 gi|292897779|ref|YP_003537148.1| DNA ligase [Erwinia amylovora ATCC 49946]
 gi|291197627|emb|CBJ44721.1| putative DNA ligase [Erwinia amylovora ATCC 49946]
 gi|291551957|emb|CBA18994.1| putative NAD-dependent DNA ligase [Erwinia amylovora CFBP1430]
          Length = 554

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 119/621 (19%), Positives = 218/621 (35%), Gaps = 91/621 (14%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S  +A  E+++L+ ++   D+ YY+  +  + D  YD L  +       F        P 
Sbjct: 23  SPSRADAEIAALKAQLEKWDEAYYRRGEAQVPDERYDTLHDKLQQWQRCF-------SPA 75

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
             L +    +  +  KV H +    ++K      + +++ +    W           ++P
Sbjct: 76  SDLRQ---PLLKTDGKVLHPVSHTGVKKASGKAAVARWMEKRDGLW-----------IQP 121

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +T+ Y  G+ V    RGDG  GED +A  R IP IP+ +    P +   +GE+Y
Sbjct: 122 KVDGVAVTLLYRDGRLVQMISRGDGVKGEDWTAKARQIPDIPKSIP-RFPAMQVFQGELY 180

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +   D    ND           + R+  +G L     + + + +  FV          AK
Sbjct: 181 LKMTDHQQAND--------GGKSARSLVAGALMAKAASTVLQRVGIFVWAWPDGPNSIAK 232

Query: 253 GQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311
                   +R LGFP   +   +      +  +          LP+  DG+V        
Sbjct: 233 RLTG----IRALGFPDIKDWTHRVENVDEVEGWRERW--FHQRLPFATDGIVVHGMPTRQ 286

Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371
                       W I+ K+   + ++ +  ++  IGRTG +  V  L PV +    ++  
Sbjct: 287 GTDWLPEQGD--WAIAWKYPPPEVTSEVRSVEFAIGRTGRINAVLNLLPVQLDDKRVSRV 344

Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431
            +                    D+  GD+V +  AG  +P++  +I   +    +     
Sbjct: 345 NI-----------GSIEHWKQTDVIAGDQVSISLAGMGVPRMDKVIWRVK---ERVLPPL 390

Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
                  S     L PK               C  Q L RL+   S+   N+ G G+Q  
Sbjct: 391 PDATHFNSLSCFHLTPK---------------CRQQFLARLEWLSSKPVLNLSGAGRQTW 435

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
               +S   A           L   +  +      + G G+      +      R +  +
Sbjct: 436 QQLMQSGSMA----HIFSWLALSEEELKA------VPGIGEQRAHFFWQQFRLSRQLPFK 485

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R++ +LG+  +      +L                +++H+  DW  L   P VG  +A+ 
Sbjct: 486 RWVKALGV-PIPERAMNTLTD---------DNWQQLLSHSLQDWQQL---PGVGQTLARK 532

Query: 612 IVEFYQNPRNICAVEALLKEV 632
           I  + Q       ++ L    
Sbjct: 533 IFSYLQQQEVRQLIDVLEAPG 553


>gi|295095236|emb|CBK84326.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 556

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 119/621 (19%), Positives = 214/621 (34%), Gaps = 97/621 (15%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S  +A +E+++L+ +++  +D Y++     + D  YD L  R       F D    +D  
Sbjct: 24  SPAKAGQEIAALKAQLTRWNDDYWKQGSSEVSDDVYDRLNARLKQWQRCFHDEPLHDDL- 82

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
                           V H      + K+ + + L +++      W           ++P
Sbjct: 83  --------PAASG--TVKHPFAHTGVHKVESKQALSRWMATQQDLW-----------VQP 121

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +T+ Y+ GK V A  RGDG  GE+ +A  R IP IP+ L+        ++GE++
Sbjct: 122 KVDGVAVTLVYKNGKLVQAISRGDGLQGEEWTAQARMIPAIPQTLAGP-LANSVLQGELF 180

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           + +            +G     N R   +G + R       +    F+       +    
Sbjct: 181 LLREG-----HIQQRMGGM---NARAKVAGAMMRATDRAALKQTGIFIWAWPDGPKAMKA 232

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
               + +    L       V+ A       + + +        P+  DG+V +    +  
Sbjct: 233 RLSTLAEAGFTLTARYTVPVKNAADVEAQRTAWFKASL-----PFATDGIVVRAS--AEP 285

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
                      W+++ K+      T +  I   +GRTG +T +A+LEP+ +    +   +
Sbjct: 286 PGERWLPGEGSWVVAWKYLPVAQVTEVKAIHFTVGRTGRITAIAQLEPLMLDDKRVQRVS 345

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L                    DI  GD+VLV  AG+ IP++                   
Sbjct: 346 L-----------GSVNRWQRLDIAPGDQVLVSLAGQGIPRLD------------------ 376

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
              +    V R              C      C  Q   RL    SR A +IEG+G+   
Sbjct: 377 --NVVWRNVDRRKPQPPSSRYNGLTCFYASPECMEQFFARLTWLSSRQALDIEGVGESGW 434

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
              +++               L    Q +  ++    G        L+   N  R     
Sbjct: 435 RTLYQA----------HRFEHLFSWLQLTQAQLTATAGISASHGAALWHQFNLARERPFI 484

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R+I ++GI    + +    A    ++Q   Q                  +P VG   A+ 
Sbjct: 485 RWITAMGIPLARSTLK---AAGDRTWQALIQRSEA----------EWRMLPGVGQEKARQ 531

Query: 612 IVEFYQNPRNICAVEALLKEV 632
           IV +   P+    ++AL K +
Sbjct: 532 IVNWLHQPQ----IDALAKWL 548


>gi|237802303|ref|ZP_04590764.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331025160|gb|EGI05216.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 560

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 115/624 (18%), Positives = 211/624 (33%), Gaps = 92/624 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +A  E+++L+++I+  DD Y++     I D  YD  + +       F     S
Sbjct: 25  CPDWSAARANNEITALQKQIAEWDDSYHRQGVSQIPDELYDQSRLKLKVWRSCF---RVS 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              + PL    G +        H IP   + K+ + + +  ++                 
Sbjct: 82  TVADNPLKTATGPL-------AHPIPHTGVNKLADEKSVTAWLR-----------GRTDV 123

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ YE G+ V A  RGDG  G+D +   R I  IP    L   E + ++
Sbjct: 124 WIQPKVDGVAVTLVYEGGRLVQAISRGDGKKGKDWTPQARLIKAIP--QQLPHAEYLVLQ 181

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+Y   +D +               N R+  +G+L R   +            +G    
Sbjct: 182 GELYWRLDDHIQAIS--------GSINARSKVAGLLARRTISPQQAD------AIGLLVW 227

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
            +  G  +M Q++  L                  +  ++ +      P         + +
Sbjct: 228 DWPNGPADMPQRLAGLQAQGFEDSATYTHRLENHAQASQWREHWYRNPLPFATDGVIIRQ 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
                    +A +P W+ + K    QA   +  ++  IGR+G +TPV  L+PV +    +
Sbjct: 288 GQRPPAQRWQASAPYWIAAWKHPYAQALAEVRKVNFNIGRSGRITPVLELKPVRLDDRTV 347

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  +                     DIR GD++ V  AG  IP++  ++       +   
Sbjct: 348 SRIS-----------TGSLQRWQTLDIRPGDQIAVSLAGLTIPRLDGVVARAAERVSMTI 396

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
                       +            A   C       +Q   RL     +    + G+G 
Sbjct: 397 PH----ASDFHELSCW--------QATPGC------ESQFRARLIWLSGKKGLALPGVGP 438

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
              D   +S   +  +    D  TL      +  ++ NI G  + S   L DS+   R  
Sbjct: 439 GTWDKLIESGQISGLL----DWMTL------NHAELANIPGLAERSSAKLLDSLQTARAK 488

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
               ++ ++G+   G                 A+  +N               P VG   
Sbjct: 489 PFLAWLKAIGMPPTGD----------------AKLPDNWHDLTTRSVEQWQAEPGVGASR 532

Query: 609 AQAIVEFYQNPRNICAVEALLKEV 632
           +  +  F+Q+P      + L    
Sbjct: 533 SAKLRAFFQDPHVKAMSQQLQAHG 556


>gi|330812312|ref|YP_004356774.1| DNA ligase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327380420|gb|AEA71770.1| putative exported DNA-ligase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 557

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 130/628 (20%), Positives = 230/628 (36%), Gaps = 97/628 (15%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P      E+AR E+++L+Q+I   DD Y++  +  + D  YD  + +       F +LA 
Sbjct: 22  PCPDWPTERARAEIAALQQQIDTWDDGYHRLGQSPVADELYDQSRAQLGQWRRCF-NLAA 80

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            +DP             +  KV H +    LEK+ + + +  ++      W         
Sbjct: 81  PDDP----------PRSTGGKVPHPVVHTGLEKLKDADAVGAWLRGREDVW--------- 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
              +PK+DG  +T+ Y KG+   A  RGDG  G D +   R I  IP+ L  ++   + V
Sbjct: 122 --AQPKVDGVAVTLVYRKGRLHQAISRGDGVQGHDWTTNARKIGAIPQRLHQSV--DLVV 177

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246
           +GE+Y      +  +            N R   +G++ R N T     Y++ FV    + 
Sbjct: 178 QGELYWRLEAHVQASS--------GSVNARGTMAGLMARSNLTVHDGVYIDLFVWDWPEG 229

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
            +   +    +           N  VR          ++       + LP+  DG+V   
Sbjct: 230 PDTLPERMAALNALGFADTLDYNQPVRTLADAEQWRDHWYR-----TPLPFASDGIVLHQ 284

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
                      +AR+P W ++ K+   QA   +  +  ++GRTG +TPV  LE + +   
Sbjct: 285 SRR--PPADRWQARAPFWSVAWKYPYAQALAEVRKVHFKVGRTGRITPVLELERIRLDDR 342

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I   ++                    DIR GDRV +  AG  IP++  +          
Sbjct: 343 WIRRVSVS-----------SLKRWEEMDIRPGDRVAISLAGLTIPRLDSV---------- 381

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL-ACSAQQLERLKHFVSRDAFNIEG 485
                    + +S   ++LN           C      C +Q L RL     +    +  
Sbjct: 382 ---------VLRSVERQNLNVPAETDHHFLSCWQPTPGCESQFLARLGWLSGKQGLALPH 432

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G    +    +      +    D  TL         ++ NI GFG+ S T L  S++  
Sbjct: 433 VGPGTWEKLLAAGRLDGLL----DWMTLDA------AELANIAGFGEHSSTRLLASLHSA 482

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R    E+++ +LG+   G       A+    +Q  A+                     +G
Sbjct: 483 RQRPFEQWLKALGLPPAGE------ARLEGPWQALAERSTEQWQAEA----------GIG 526

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVS 633
              A  +  F+++P+ +   + L     
Sbjct: 527 PGRAAQLSAFFRDPQVLALSDVLRTAGV 554


>gi|325662259|ref|ZP_08150874.1| hypothetical protein HMPREF0490_01612 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471511|gb|EGC74732.1| hypothetical protein HMPREF0490_01612 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 260

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 68/275 (24%), Positives = 111/275 (40%), Gaps = 21/275 (7%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +EQ ++ +  L Q ++     YYQ +K I+ + EYD L      +             N 
Sbjct: 1   MEQKKQRMQELVQLLNQAGKAYYQDAKEIMSNHEYDRLYDELLVLEQE----LGITMANS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P   +G E+   L K  H  P LSL+K    + L++F+                  +  K
Sbjct: 57  PTVNVGYEVLSELPKERHEKPMLSLDKTKETDRLKEFV------------GEKKAVISWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  I + YE G+   A  RG+G  GE ++   +    +P  L +     + +RGE  I
Sbjct: 105 LDGLTIVLTYENGELKKAVTRGNGEVGEVITNNAKVFQNVP--LRIAYRGELILRGEAVI 162

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252
              DF  +N+E+  V    Y NPRN  SG +R+LN      R + F+   L K   +  +
Sbjct: 163 GYRDFEKINEEIEDV-DAKYKNPRNLCSGSVRQLNNEITARRNVQFYAFSLVKAEGVDFQ 221

Query: 253 GQYEML-QKMRCLGFPVNNGVRQANTFHGIVSYYN 286
               +  + ++  GF V                + 
Sbjct: 222 NSRNIQLEWLKEQGFDVVEHYEVTKDTLEERVRFF 256


>gi|307543787|ref|YP_003896266.1| NAD-dependent DNA ligase LigB [Halomonas elongata DSM 2581]
 gi|307215811|emb|CBV41081.1| NAD-dependent DNA ligase LigB [Halomonas elongata DSM 2581]
          Length = 561

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 129/627 (20%), Positives = 217/627 (34%), Gaps = 97/627 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S   A +EL++L   +   +  Y +     + D  YD  + R +A    FPD++  
Sbjct: 21  CPDWSKGHAERELAALHDRLDAWERAYRRNGSSPVSDDIYDQAQARFEAWQDCFPDISVD 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P           +  L    H +P   L K+ ++ +   ++ R    W          
Sbjct: 81  PAPTL------DPPDGELS---HPVPQSGLAKLDDVVEAGAWLARRDDVW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            L+PK+DG  +T+ YE+G+   A  RGDG SG+D +A  R IP +P    L   + + +R
Sbjct: 122 -LQPKVDGVAVTLVYEQGELSQAISRGDGLSGQDWTAKARFIPDVPD--RLPTQQRLVLR 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL--NPTDITRYLNFFVHGLGKT 246
           GE+Y+  +              +  A  R+  +G L R   +     +   F        
Sbjct: 179 GELYLKLDG--------HVQAERGAAGARSVVAGWLARDSLDGAKARQIGLF-----VWD 225

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                K   E L ++  LGFP              V         R+ LP+  DG+V K 
Sbjct: 226 WPDGPKALPERLARLAELGFPDTTDWTLPAESLEAVLS-QRDDWYRTPLPFATDGVVLKQ 284

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            +             P W  + K+  +    R+  ++ ++GRTG +TP+  L P  + G 
Sbjct: 285 GQR--PGGEARTEAPPDWAAAWKYPPRSVLARVRGVEFRVGRTGRITPLLHLVPETLAGR 342

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I   T+                    DIR GD V +  AG+ IP++  +          
Sbjct: 343 SIRRVTV-----------GSLGRWQTLDIRPGDVVTISLAGQTIPRLDSVAWRAAE---- 387

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEG 485
                            ++ P       A  C      C  Q LERL      +A ++ G
Sbjct: 388 ---------------RPEVEPPPASDYNALSCWHPSPGCKGQFLERLAWLGGPEALDLAG 432

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +G        +    A  ++   D  +L      + + I  + G        L +     
Sbjct: 433 VGAGTWRSLVE----AGLVKDLLDWMSLSAETLQAASGIGEVRG------RQLVEVFATA 482

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R    + ++ +LG                      A E        + D      +P VG
Sbjct: 483 RQRPFDAWLEALGAPS----------------GALADEATEWSTLASRDLEQWRALPEVG 526

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEV 632
           +  A+A+ +F+ N       E L +E 
Sbjct: 527 ETRAEALHDFFANAEVRGLAERLGEEG 553


>gi|32396667|gb|AAP49291.1| NAD-dependent DNA ligase [Bacillus sp. IMG-2]
          Length = 107

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 8/115 (6%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D+EYD   R    +   +P+L     P+ P  ++GG +  +  KV H +P LSL   +N 
Sbjct: 1   DAEYDRFMRELIELEEKYPELK---TPDSPSQRVGGAVLDAFRKVAHRVPMLSLANAFNE 57

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHS 159
           +DLR F  R+ +         + + +E KIDG  +++RYE G FV  + RGDG +
Sbjct: 58  QDLRDFDRRVRQAVG-----DVEYVVELKIDGLAVSLRYENGLFVQGSTRGDGTT 107


>gi|330961969|gb|EGH62229.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 523

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 113/615 (18%), Positives = 213/615 (34%), Gaps = 102/615 (16%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PDLARSEDPNGPLNKI 78
           +L+Q+I+  DD Y++    +I D  YD  +++  A    F    P+        GPL   
Sbjct: 2   ALQQQIASWDDSYHRQGISLIPDELYDQARQKLSAWRTCFAVSTPEANPLATATGPL--- 58

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
                       H IP   + K+ + +D++ ++                  ++PK+DG  
Sbjct: 59  -----------AHPIPHTGVNKLADEKDVKAWLK-----------GRTDLWIQPKVDGVA 96

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +T+ Y++G+ V A  RGDG  G+D +   R I  IP    L   E + ++GE+Y   ++ 
Sbjct: 97  VTLIYDEGRLVQAISRGDGVQGQDWTPQARLIKAIP--RQLPRTESVILQGELYWRLDEH 154

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
           +               N R+  +G+L R                +G     +  G  +M 
Sbjct: 155 IQATS--------GSVNARSKVAGLLARQTIKPQQAN------AIGLFVWDWPNGPTDMA 200

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           Q++  L                  +   + +      P         + +         +
Sbjct: 201 QRLAGLQAMGFGDSVGYTHLLENHAQAAKWREHWYRNPLPFATDGVIMRQGQRPPAQRWQ 260

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           A +P W+ + K    QA   + +++  +GR+G +TPV  L PV +   ++T  +      
Sbjct: 261 ATAPYWIAAWKHPYAQALAEVRNVNFTVGRSGRITPVLELTPVRLDDRIVTRISA----- 315

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
                          DIR GD+V V  AG  IP++  ++                     
Sbjct: 316 ------GSLQRWQALDIRPGDQVAVSLAGLTIPRLDSVVSRATE---------------- 353

Query: 439 SRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
                +++    +      C      C +Q   RL     +    + G+G    D   ++
Sbjct: 354 ---RAEMSTPDARDFHELSCWQATPGCESQFRARLVWLSGKKGLALPGVGPGTWDRLIEN 410

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
              A  +    D  TL      +  ++ NI GF + S   L  S+   R    + ++ ++
Sbjct: 411 GRIAGLL----DWMTL------NHAELANIPGFAERSSAKLLASLQTARERPFQVWLKAI 460

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           G+   G                 A+  +N               P +G   A  +  F+ 
Sbjct: 461 GLPPTGT----------------AKLPDNWHDLAARSVEQWQAEPGIGPGRAAKLRAFFH 504

Query: 618 NPRNICAVEALLKEV 632
           +P+     + L  + 
Sbjct: 505 DPQVQAISQQLQAQG 519


>gi|327395796|dbj|BAK13218.1| DNA ligase YicF [Pantoea ananatis AJ13355]
          Length = 589

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 127/624 (20%), Positives = 219/624 (35%), Gaps = 91/624 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A +  +A  E++ L+Q++   D  Y+Q  + ++ D++YD+L++R +     F   A  
Sbjct: 23  CPAWTSARAVSEIAHLQQQLRQWDKAYFQQGRSLVSDADYDSLQQRLNHWQRCFTQAADE 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P  P      E       V H+              ++K   R  R            
Sbjct: 83  YVPALP------EDGTQWHPVAHT-------------GVKK--VRDKRALGYWMQARNDL 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PKIDG  +++ Y +GK V    RGDG  GE   A  R IP IP  +  +    I ++
Sbjct: 122 WVQPKIDGVAVSLIYRQGKLVSLISRGDGLHGEQWLAKARHIPAIP-SVIDSQQGSIVLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+      FL +     AV     A  R A + + +  +P      +  +    G  S 
Sbjct: 181 GEL------FLKMTGHQQAVDGGRNARARVAGAMMSQADSPLLAQLGIFIWSWPDGPASM 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E L ++   GF + +   Q        +     +   + LP+  DG+V     
Sbjct: 235 P------ERLARLSSWGFDLASHWTQ-PVQDEEDAASWRERWFHAPLPFVTDGIVVHQAA 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               K          W I+ K+   + S+ +  +D  IGRTG +  V  ++PV +    +
Sbjct: 288 RPAGKYWQPGEGE--WAIAWKYQPPEVSSEVRSVDFSIGRTGKVAVVLNIQPVQLDDKTV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                   +D+  GD+V V  AG+ IP++  +I      D    
Sbjct: 346 RRVNI-----------GSLKRWREQDVIAGDQVTVSLAGQGIPRLERVIWRVAQRD---- 390

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLG 487
                             P   +      C T    C  Q L RL     +   NI G+ 
Sbjct: 391 ---------------YPEPPGSEHFTHLSCYTLTPDCHRQLLARLSWLSQKFVLNIPGVQ 435

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +        +      I       T+   Q  +        G        ++      R 
Sbjct: 436 RSTWQRLLDT----GCITHLFSWLTITPEQIAAA------AGISSERAQQIWHRFELTRQ 485

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R++ +LGI  +  +  R+LA          +E   ++A +   W +L   P VG  
Sbjct: 486 QPLRRWVNALGIA-LPQKALRALAD---------KEWEPLLARDVQTWQAL---PGVGAR 532

Query: 608 IAQAIVEFYQNPRNICAVEALLKE 631
            A+ I   +Q+      +  L ++
Sbjct: 533 RAERIAAQFQDAGLRKLITFLQQQ 556


>gi|251791698|ref|YP_003006419.1| NAD-dependent DNA ligase LigB [Dickeya zeae Ech1591]
 gi|247540319|gb|ACT08940.1| DNA ligase (NAD(+)) [Dickeya zeae Ech1591]
          Length = 560

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 128/628 (20%), Positives = 232/628 (36%), Gaps = 91/628 (14%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            P  A S  +A +E++ L Q+++  D+ YY+  +  + D  YD L++        F    
Sbjct: 21  TPCPAWSSARAEREVTQLGQQLTQWDNAYYEQGRSPVDDQVYDQLRQTLATWQRCF---- 76

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
                     +       S  K +H +    L+K+    +L++++ R    W        
Sbjct: 77  -----QSDTERF-AIRLSSTGKQSHPVAHTGLKKLSEPTELKQWVARHDGLW-------- 122

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
              ++PKIDG  +T+ YE+GK V A  RG+G  GED +  +R I  +P+ LS  +     
Sbjct: 123 ---VQPKIDGVAVTLVYEQGKLVSAVSRGNGRQGEDWTDKVRQINAVPQALSG-MSGRQI 178

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246
            +GE+Y+               G     N R   +G +RR  P+ +   L  F+      
Sbjct: 179 FQGELYLP-----VTEHRQYVSGGI---NARAQVAGEMRRKQPSPLLSRLGVFIWAWPDG 230

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                      L K+R +GF +     QA +     + + E +  R+ LP+  DG+V + 
Sbjct: 231 PADMP----TRLAKLREMGFGLTADYTQAISSLEAAAQWRE-RWYRAPLPFVTDGVVLRQ 285

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
                      +     W ++ K+      T +  +D++IGRTG +T V +L+PV +   
Sbjct: 286 A--KEPAGRYWQDTPAEWAVAWKYPLMNQVTEVTGVDVEIGRTGRMTVVLQLQPVMLDDK 343

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++   L                    D+  GDRV +  AG  IP++  ++   R    +
Sbjct: 344 SVSRVNL-----------GSVGRWRQWDVLPGDRVSISLAGLGIPRLDAVVW--RAAVRE 390

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEG 485
             + P+  P                      C      C  Q L RL     R+  ++ G
Sbjct: 391 SITVPAVSPFD-----------------VFSCLQWSRECQPQFLARLVWMSGRNGLSLSG 433

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           + +       +    A  +        L+  Q  +         F +     +Y  + + 
Sbjct: 434 ISEATWRRLAQRGTLADVVS----WLALEPAQLAAAGD------FNEQQAARIYRQLQQA 483

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R   L R++ +LG+       +   A    S +   Q        +  +W        +G
Sbjct: 484 RRQPLRRWLLALGL---PVPSSARYALEGASLEQLQQ-------RSIVEWQQFS---GIG 530

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVS 633
              AQ I +F  +P  +  +  L ++  
Sbjct: 531 ARRAQRIRDFLHHPEIVRQLAWLNEQGV 558


>gi|213859393|ref|ZP_03385097.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 109

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 3/107 (2%)

Query: 615 FYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           F+    N   +  LL E       +  + + + S    K +V TG+L ++ R  A+  + 
Sbjct: 1   FFAEESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVLTGSLSQMSRDDAKARLV 60

Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            LGA V+  +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 61  ALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 107


>gi|330955486|gb|EGH55746.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae Cit 7]
          Length = 296

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 103/255 (40%), Gaps = 20/255 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   ++E + +   +      D    +      F     +   +     +   G   
Sbjct: 57  VLARSLASLERVQQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRSVIDALLGECGLQL 114

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +LE  I  L I  VG   A+ LA  + + +               D
Sbjct: 115 QDQGELGAEFAASTTLEGMIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 164

Query: 595 WLSL-IRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIEN 649
           WL +   +P   +  A+++ +F+ +  N     A+EA LK+        +K V    +  
Sbjct: 165 WLDMRQALP---EKQAKSVRDFFDDSANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAG 221

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ ++
Sbjct: 222 QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVL 281

Query: 710 NEEQFLFLLQQYNTT 724
           +E+  L  L +    
Sbjct: 282 DEDALLKRLAELGVA 296



 Score = 68.7 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 21/149 (14%)

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
           PAD++ L+  Q         + GF ++S   L  +I   R  +L RFI++LGI  VG E 
Sbjct: 1   PADLYKLKYEQIID------LEGFAEISSNKLLKAIADSRQPTLARFIYALGIPDVGEET 54

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
           A+ LA+   S +   Q +  +          L  +P VG  +A  I  F+++  N   ++
Sbjct: 55  AKVLARSLASLERVQQALPEV----------LTYLPDVGLEVAYEIHSFFEDEHNRSVID 104

Query: 627 ALLKEVSPSIGRHEK-----NVSSEIENK 650
           ALL E    +    +       S+ +E  
Sbjct: 105 ALLGECGLQLQDQGELGAEFAASTTLEGM 133


>gi|238797649|ref|ZP_04641145.1| DNA ligase B [Yersinia mollaretii ATCC 43969]
 gi|238718513|gb|EEQ10333.1| DNA ligase B [Yersinia mollaretii ATCC 43969]
          Length = 565

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 107/622 (17%), Positives = 216/622 (34%), Gaps = 97/622 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S E+   E+ SL++++   D  Y+Q    ++ D  YD L+ +          + R 
Sbjct: 27  CPEWSTERVSLEVHSLQKQLDQWDAIYHQQGVSLLTDDLYDQLQAKLQGW-----QVCRG 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +  +    ++         K +H +    L+K+ +  +L  ++ R  + W          
Sbjct: 82  QPDDTENRRV-----PGHGKFSHPVAHTGLKKLKDEAELANWMQRREKIW---------- 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK      RGDG  G++ S     I  IP         ++ ++
Sbjct: 127 -VQPKVDGIAVTLVYQNGKLAQLLSRGDGLKGQNWSDKASFITAIP-QTIAAAAPMLTLQ 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R++ +G L R + + +   L  F+       +
Sbjct: 185 GELFLQREGHKQA--------QFGGVNARSSVAGALMRKSSSPLLAQLGIFIWAWPDGPK 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E  ++++ +GFP+     +              +  ++ LP+  DG+V + +E
Sbjct: 237 SM----MEKNRRLQKMGFPLTAQYSK-PVSSAKDVAQWRERWYQTPLPFVTDGVVIRQEE 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W ++ K+  +Q  T + DI   IGRTG +T + ++ PV I    I
Sbjct: 292 EPAGRYWQAVPGP--WSVAWKYPPQQKMTEIKDIHFTIGRTGKITVILQVSPVKIDDKWI 349

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI +GD+V +  AG+ IP++ +++           
Sbjct: 350 RRVNI-----------GSIARWRQWDITLGDQVTIALAGQGIPRLDNVVWRVSQ------ 392

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG--LACSAQQLERLKHFVSRDAFNIEGL 486
                          +L P          C       C  Q L RL         ++  +
Sbjct: 393 -------------RHELTPPERDKFHQLSCFRHLPHECEPQFLSRLIWLSGPKGLDMRSI 439

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G                ++      +L   Q      + +I G       ++Y    + +
Sbjct: 440 GGGLWRELIHH----GLVKDLVGWLSLTTDQ------LADIPGVSLERAEDIYQQFQRAK 489

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
                +++ +LG   V +      A    S   ++                      VG 
Sbjct: 490 QKPFSQWLQALGFPRVVSSDDHWHALQRKSITEWSLAS------------------GVGL 531

Query: 607 IIAQAIVEFYQNPRNICAVEAL 628
           + A+ I+ F  +P      + L
Sbjct: 532 MRAKQIIHFLHHPEVQAIADFL 553


>gi|146309759|ref|YP_001174833.1| NAD-dependent DNA ligase LigB [Enterobacter sp. 638]
 gi|257096556|sp|A4W502|LIGB_ENT38 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|145316635|gb|ABP58782.1| DNA ligase (NAD(+)) [Enterobacter sp. 638]
          Length = 556

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 127/627 (20%), Positives = 223/627 (35%), Gaps = 99/627 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A +E++ L  +IS  +D Y+Q  K  + D  YD L  R       F     +
Sbjct: 20  CPAWSHAKAEQEIAGLNAQISRWNDAYWQEGKSDVSDEIYDQLNTRLKQWQQCFNHEPAT 79

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           ED                  + H      + K+   E+LR+++      W          
Sbjct: 80  EDI---------PPANG--TLRHPFAHTGVHKVSGKEELRQWMHSRRDLW---------- 118

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y KGK V A  RGDG  GED +A ++AIP++P  +   + E   ++
Sbjct: 119 -VQPKVDGVAVTLVYRKGKLVQAISRGDGVKGEDWTARVQAIPSVPLNVKGVLSE-SVLQ 176

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++          E     +    N R   +G++ R N   +   L  F+       +
Sbjct: 177 GEIFLR--------CERHIQQQMGGMNARAKVAGMMMRQNNKTVLENLGVFIWAWPDGPQ 228

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                   + +  +          R  +T   +     E  +     P+  DG+V +   
Sbjct: 229 SMP---QRLSELTKAGFTLTAQYTRAVSTADEVEKNRKEWLTSSL--PFVTDGIVVRSSI 283

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
             + +Q         W+++ K++       +  I   IGRTG ++ VA LE + +    +
Sbjct: 284 EPVGEQWLPGEGD--WVVAWKYSPVSQVAEVNAIQFAIGRTGKISVVAVLESIQLDDKRV 341

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV--NERHPDAQ 426
               L                    DI  GD++LV  AG+ IP+V  ++   N+R   A 
Sbjct: 342 KRVNL-----------GSVSRWQALDIAPGDQILVSLAGQGIPRVDKVVWRGNDRKKPAP 390

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           P S                        A+  C        Q   RL    S+   N+EGL
Sbjct: 391 PASQYHSLTCF---------------YASPECLE------QFFARLVWLSSKQILNMEGL 429

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G        ++               +      +  +IE   G        L+      R
Sbjct: 430 GDSSWRLLHQT----------YHFEHIFSWLAVTQEQIEKTSGLNPARRLQLWHRFELAR 479

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +   +++I +LGI  +    A +L+ +             +   +   W  L   P +G 
Sbjct: 480 HHPFKKWIKALGI-PLPQAAADALSVH---------SWRQLQDKDAVSWNQL---PGIGT 526

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS 633
             A+ +VEF  + +    +  L   + 
Sbjct: 527 EKARKLVEFVHDSQ----ITRLATWLG 549


>gi|242241341|ref|YP_002989522.1| NAD-dependent DNA ligase LigB [Dickeya dadantii Ech703]
 gi|242133398|gb|ACS87700.1| DNA ligase (NAD(+)) [Dickeya dadantii Ech703]
          Length = 575

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 110/617 (17%), Positives = 216/617 (35%), Gaps = 91/617 (14%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A +E+  L  +++  D  YY   +  I D  YD L++R +     F     +     P  
Sbjct: 34  AEQEMERLGHQLAVWDRAYYGAGESQIDDHTYDQLRKRLETWQACFHADQTAFPIPLPTE 93

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
                      K  H +    L+K+    +LR++I +    W           ++PKIDG
Sbjct: 94  ----------GKTPHPVAHTGLKKLSEAGELRRWIAQHRGLW-----------VQPKIDG 132

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +T+ YE+GK V A  RG+G+ GED +  +R +P +P+ L    P+ + ++GE+Y+   
Sbjct: 133 VAVTLVYEQGKLVSAVSRGNGYRGEDWTEKVRRMPQVPQQLP-TAPDQLVLQGELYLGMP 191

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
                        +   AN R   +G +RR  P+ +   +  FV       +   +   +
Sbjct: 192 G--------HRQQQDGGANARARVAGEMRRSQPSSLASRIGVFVWEWPDGPQSMPERLSQ 243

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           +      +       +            +         LP+  DG+V +  +        
Sbjct: 244 LRSLGFEMTERYTQPITTLEDAARWRERWYR-----EPLPFATDGVVLRQAQ--EPAARY 296

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
            + +   W ++ K+   +  T +  ++I +GRTG +  V  L+P+ +    I    +   
Sbjct: 297 WQNKPAEWAVAWKYPLTRLVTEVEGVEIAVGRTGNMAVVLTLQPLTLDDKTIRRVNV--- 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
                            D+  GD+V +  AG+ IP++  ++                   
Sbjct: 354 --------GSISRWRQWDVLPGDQVSIGLAGQGIPRLDAVVWR----------------- 388

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
             + V   ++       +   C      C +Q + RL     +    + G+G+       
Sbjct: 389 --TSVREPMSVPENVGFSEFTCLTWREGCRSQFIARLVWLSGKRGLGLTGVGEGVWQRLV 446

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
                   +               +  ++  + G G      +Y    + R   L R++ 
Sbjct: 447 LRGMLPDVVS----------WLALTPAQLIGLGGLGATQGEKVYQQFQRARRQPLSRWLM 496

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGI       A   A + +S     Q        +  +W        +G   A  I +F
Sbjct: 497 ALGI---PVPRAAQGALHGVSLIALQQ-------RSLAEWRQFS---GIGVARAGNIRDF 543

Query: 616 YQNPRNICAVEALLKEV 632
              P     ++ L+++ 
Sbjct: 544 LHQPEIAALLQWLVRQG 560


>gi|261823684|ref|YP_003261790.1| NAD-dependent DNA ligase LigB [Pectobacterium wasabiae WPP163]
 gi|261607697|gb|ACX90183.1| DNA ligase (NAD(+)) [Pectobacterium wasabiae WPP163]
          Length = 563

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 123/616 (19%), Positives = 223/616 (36%), Gaps = 94/616 (15%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF-PD-LARSEDPNGPLN 76
           KE+++L Q++   DD YY   K  + D  YD L+ + +     F P        P+    
Sbjct: 37  KEITALRQQLERWDDVYYTEGKSPVEDDVYDQLREQLNQWLSCFQPQNAIPVRLPDNGKQ 96

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           +             H +    L+K+ +   L ++I +    W           ++PK+DG
Sbjct: 97  R-------------HPVAHTGLKKVSDRGRLVQWIAQREGLW-----------IQPKVDG 132

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             IT+ Y+ GK V A  RG+G  GED +  +R IP IP +L+     +  ++GE+++   
Sbjct: 133 VAITLVYQHGKLVSAVSRGNGLQGEDWTEKVRLIPGIPHLLTGAPSSL-VLQGELFLKMT 191

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
           D           G     N R+  +G +RR  P+ +   ++ FV       +       E
Sbjct: 192 D-----HRQYTQGG---VNARSVVAGEMRRHQPSPVLSQISLFVWEWPDGPKAMP----E 239

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K++ +GF +  G   A       +         S LP+  DG+V +  +    +   
Sbjct: 240 RLEKLKEMGFAMTAGYTHAIESFA-DAEKWRHYWHHSPLPFVTDGVVIRQTKEPQGRYWR 298

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +    W I+ K+        + D+   +GRTG +  V +L P+ +   L++   +   
Sbjct: 299 NTSAD--WAIAWKYPPVHQVAEVTDVAFSVGRTGKIAVVLKLNPMKLDDKLVSRVNV--- 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
                            D++ GDRV V  AG+ IP++                       
Sbjct: 354 --------GSLSRWKQWDVQPGDRVSVSLAGQGIPRL------------------DSVAW 387

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
             +     + P      A         C  Q L RL         N+ G+         +
Sbjct: 388 RGAERPALVPPNEHDFHAFSCFRYSAVCQQQFLARLVWLSGEHGLNLAGMRDGMWLRLMQ 447

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +              +      +  ++  + G GD    ++Y S+   R + L R++ +
Sbjct: 448 HDLLG----------DVLAWLSLTEAQLNAVNGMGDKRARDIYTSLQSTRQVPLSRWLLA 497

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI       ARS   +         +   +       W        +G+  A+ I+ F 
Sbjct: 498 LGIP--VPRSARSALDH--------ADWLALQQRTAQQWRQFS---GIGERRAEEIMAFL 544

Query: 617 QNPRNICAVEALLKEV 632
            +P  +  +  L +E 
Sbjct: 545 NHPIVVEFIARLEREG 560


>gi|296100486|ref|YP_003610632.1| NAD-dependent DNA ligase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295054945|gb|ADF59683.1| NAD-dependent DNA ligase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 556

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 121/620 (19%), Positives = 207/620 (33%), Gaps = 94/620 (15%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S  +A KE+++L  +I   DD Y+Q     + D  YD L  R     H F        P+
Sbjct: 24  SQARAEKEIATLSAQIKRWDDAYWQQGISEVNDEVYDQLNGRLKQWQHCF----GHASPD 79

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
                    +     ++ H +    + K+ + E+L +++      W           ++P
Sbjct: 80  -------AALPALTGRIKHPVAHTGVHKVSSKEELGQWMHARRNLW-----------MQP 121

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +T+ Y  G    A  RGDG  GED ++ +R IP++P+ L         ++GE++
Sbjct: 122 KVDGVAVTLVYRGGTLAQAISRGDGLKGEDWTSQVRLIPSVPQHLYGA-LANSVLQGELF 180

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
             + + +    +    G    A    A           ++  ++  +  G  +     A+
Sbjct: 181 WQRENHI----QQQMGGMNARAKVAGAMMRQQDNAFLREVGVFIWAWPDGPKEMKTALAE 236

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
                         PV +                      + LP+  DG+V +       
Sbjct: 237 LSDAGFTLTARYTLPVEHIEAVEKQRSAWH---------TAALPFATDGIVVRSA--DEL 285

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
                      W+++ K+        + DI   +GRTG +  VA LEPV +    +   +
Sbjct: 286 PGENWLPGEGSWVVAWKYPPVAQVAEVRDIHFTVGRTGKIAVVAGLEPVRLDDKQVQRVS 345

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           L                    DI  GD++ V  AG+ IP+                    
Sbjct: 346 L-----------GSVGRWQRLDIAPGDQIQVSLAGQGIPRFD------------------ 376

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
              +      R           +  C      C  Q   RL    S+   +I GLG+   
Sbjct: 377 --KVVWRGTDRQKPEPPVPQYHSLSCFYASPECMEQFFARLTWLSSKQGLDIAGLGESGW 434

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
              ++    A           L + Q  +T       GF       L+   N  R     
Sbjct: 435 RALWQ----AHRFEHIFSWLLLTQAQLQTT------PGFSAARGLALWHQFNLVRERPFI 484

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R+I ++G+       A   A   LS+Q   Q        +  DW +L   P  G+  A+ 
Sbjct: 485 RWIMAMGV---PLAQATLKAAGELSWQTMHQ-------RSAMDWQTL---PGTGEEKARQ 531

Query: 612 IVEFYQNPRNICAVEALLKE 631
           IV +   P  +  +   L E
Sbjct: 532 IVNWLHAPE-VDVLAKWLAE 550


>gi|289804479|ref|ZP_06535108.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 119

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 5/124 (4%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P ILD+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+      K   ++ +  E K
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL--KSTENVIWCCELK 115

Query: 134 IDGT 137
           +DG 
Sbjct: 116 LDGL 119


>gi|50119005|ref|YP_048172.1| NAD-dependent DNA ligase LigB [Pectobacterium atrosepticum
           SCRI1043]
 gi|81827264|sp|Q6DB58|LIGB_ERWCT RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|49609531|emb|CAG72964.1| putative DNA ligase [Pectobacterium atrosepticum SCRI1043]
          Length = 563

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 123/616 (19%), Positives = 220/616 (35%), Gaps = 90/616 (14%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A KE+ +L Q++   DD YY   K  I D  YD L+ + +  +  F           P  
Sbjct: 35  ASKEIDALRQQLEQWDDVYYTEGKSPIEDDVYDQLREQLNQWSQCF----------QP-Q 83

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
            +         K  H +    L+K+ +   L ++I +    W           ++PK+DG
Sbjct: 84  NVIPARLPDNGKQPHPVAHTGLKKLSDRVQLVQWIVQREDLW-----------VQPKVDG 132

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +T+ Y+ GK V A  RG+G  GED +   R IP IP +LS        ++GE+++   
Sbjct: 133 VAVTLVYQHGKLVSAVSRGNGLQGEDWTEKARLIPDIPHLLSGAPSS-FVLQGELFLKMT 191

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
           D         A G     N R+  +G +RR  P+ +   +  FV       +       E
Sbjct: 192 D-----HRQYAQGG---VNARSIVAGEMRRHQPSPVLSQIGLFVWEWPDGPKAMP----E 239

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L K++ +GF +      A                 S LP+  DG+V +  +    +   
Sbjct: 240 RLDKLKEMGFAMTADYTHAIESFA-DVEKWRDHWYHSPLPFVTDGVVIRQTKEPQGRYWR 298

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
             +    W I+ K+        ++D+   +GRTG +  V ++ P+ +    ++   +   
Sbjct: 299 NTSAD--WAIAWKYPPVHQVAEVVDVAFSVGRTGKVAVVLKISPLKLDDKSVSRVNV--- 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
                            D+  GDRV V  AG+ IP++ +++                   
Sbjct: 354 --------GSLSRWKQWDVLPGDRVSVSLAGQGIPRLDNVVW------------------ 387

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
             +     ++P      A       + C  Q L RL         N+ G+         +
Sbjct: 388 RGTERPVIVSPDEHNFHAFSCFRYSVVCQQQFLARLVWLSGEHGLNLAGMRDGMWLRLMQ 447

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     +               +  ++  + G GD    ++Y S+   R  SL  ++ +
Sbjct: 448 HDLLGDVLS----------WLYLTEAQLNAVNGMGDKRARDIYMSLQSARQKSLSHWLLA 497

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  V      +L               N +A          +   +G+  A+ I+ F 
Sbjct: 498 LGI-PVPRSAISALNNV------------NWLALQQRTAQQWRQFSGIGERRAEEIMAFL 544

Query: 617 QNPRNICAVEALLKEV 632
            +P  +  +  L  E 
Sbjct: 545 NHPIVMELIARLDLEG 560


>gi|293393631|ref|ZP_06637941.1| NAD-dependent DNA ligase adenylation domain protein [Serratia
           odorifera DSM 4582]
 gi|291423966|gb|EFE97185.1| NAD-dependent DNA ligase adenylation domain protein [Serratia
           odorifera DSM 4582]
          Length = 566

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 114/618 (18%), Positives = 218/618 (35%), Gaps = 94/618 (15%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+   E+++LEQ+++  D  YYQ  + +I D  YD+L+++                P  P
Sbjct: 32  ERLSLEMTALEQQLTRWDVAYYQQGQGLIDDELYDSLRQKLRLWQSCAGSGDGDALPALP 91

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +G        K  H +    L K+ + + + +++      W           ++PK+
Sbjct: 92  ---VG--------KTPHPVAHTGLRKLADRQAVVQWMRGRDALW-----------VQPKV 129

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +T+ Y++G  + A  RGDG  GED    +++IP +P  L    PE + ++GE+   
Sbjct: 130 DGVAVTLVYQRGTLIGAISRGDGKQGEDWLEKVKSIPAVPSSLPDA-PERVVLQGEL--- 185

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
              FL + D    +     A  R A + + +R +P      L  +    G  +      Q
Sbjct: 186 ---FLIMTDHQQNLTGGVNARSRVAGALLRQRPSPLLAQIGLFVWGWPDGPATMAERLRQ 242

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
                 +  LGFP+     ++         +      ++ LP+  DG+V   D     + 
Sbjct: 243 ------LATLGFPLAQAYTRSVNDVDG-VEHWRSHWHQNPLPFVTDGVVIHQDSPPQGRY 295

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
              +     W ++ K+   Q   R+  +  +IGRTG +  V  L+P+ +    +    + 
Sbjct: 296 WRNKPAE--WAVAWKYPAVQQVARVNKVIFRIGRTGKIAVVLALDPIRLDDKWVRRVNV- 352

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
                         +    +   GD V +   G  IP + D++                 
Sbjct: 353 ----------GSLPLWQQLNALPGDHVAISLQGHGIPYLRDVVWRAVE------------ 390

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGL-ACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                   + L         A  C      C  Q + RL         N+ G+ +     
Sbjct: 391 -------RQPLTVPDANRYHALSCFELQPGCRQQLIARLVWLSGAQGLNLRGVNEASWQA 443

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             +       ++   D  TL  +Q  +      + G G     ++Y      R     R+
Sbjct: 444 LIEQS----LVKNLVDWLTLTPQQLMA------VPGIGHKRAQDIYQQFRLARQRPFARW 493

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           + +LG     ++         L  +++   +         +         +G   A  I 
Sbjct: 494 LIALGAPLTPSQS--------LGVEHWVPALQQTTQAWQKNA-------GIGAKRANNIR 538

Query: 614 EFYQNPRNICAVEALLKE 631
            F+Q+P      +AL ++
Sbjct: 539 AFFQHPSVRQLADALAEQ 556


>gi|289679601|ref|ZP_06500491.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
           FF5]
          Length = 261

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 103/254 (40%), Gaps = 18/254 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            ++R   ++E + +   +      D    +      F     +   +     +   G   
Sbjct: 21  VLARSLASLERVKQALPEVLTYLPDVGLEVAYEIHSF--FEDEHNRSVIDALLGECGLQL 78

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
                       + +LE  I  L I  VG   A+ LA  + + +               D
Sbjct: 79  QDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISA----------D 128

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENK 650
           WL + +   + +  A+++ +F+ +  N     A+EA LK+        +K V    +  +
Sbjct: 129 WLDMRQA--LSEKQAKSVRDFFDDSANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQ 186

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
             V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++
Sbjct: 187 TWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLD 246

Query: 711 EEQFLFLLQQYNTT 724
           E+  L  L +    
Sbjct: 247 EDALLKRLTELGVA 260



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 15/105 (14%)

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            RFI++LGI  VG E A+ LA+   S +   Q +  +          L  +P VG  +A 
Sbjct: 3   ARFIYALGIPDVGEETAKVLARSLASLERVKQALPEV----------LTYLPDVGLEVAY 52

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650
            I  F+++  N   ++ALL E    +    +       S+ +E  
Sbjct: 53  EIHSFFEDEHNRSVIDALLGECGLQLQDQGELGAEFAASTTLEGL 97


>gi|289623888|ref|ZP_06456842.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289646918|ref|ZP_06478261.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330869835|gb|EGH04544.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 561

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 113/623 (18%), Positives = 204/623 (32%), Gaps = 102/623 (16%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PDLARSED 70
            +AR E+++L+Q+++  DD Y++     I D  YD  +++ +     F    P+    + 
Sbjct: 31  AKARSEVTNLQQQMAAWDDSYHRQGISHIPDELYDQARQKLNLWRSCFAVSTPEADPLKT 90

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             GPL               H +P   + K+ +   ++ ++      W           +
Sbjct: 91  AVGPL--------------PHPVPHTGVNKLADESSVKDWLKGRKDLW-----------I 125

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ YEKG+ V A  RGDG  G++ ++  R I  IP    L   + + ++GE
Sbjct: 126 QPKVDGVAVTLVYEKGQLVQAISRGDGRKGQNWTSQARLIKAIP--QRLPQHDSLILQGE 183

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +Y    D +               N R+  +G+L                  +G     +
Sbjct: 184 LYWRLTDHIQATS--------GSVNARSKVAGMLA------RQTISPQQADAIGLFVWDW 229

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             G  +M Q++  L      G                 +      P         + +  
Sbjct: 230 PNGPTDMAQRLAGLQAMGFEGSEAYTHSLENHVQAARWREHWYRNPLPFATDGVIMRQGQ 289

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
                  +A +P W+ + K    QA   +  +   IGR+G +TPV  L PV +    ++ 
Sbjct: 290 RPPMQRWQASAPYWIAAWKHPYAQALAEVRKVSFNIGRSGRITPVLELTPVRLDDRTVSR 349

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            +                     DIR GD+V V  AG  IP++  +I             
Sbjct: 350 IS-----------TGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRAAERVEMII-- 396

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
                                      C      C +Q   RL     +    + G+G  
Sbjct: 397 -----------------PQADDFHELSCWQATPGCESQFRARLIWLSGKKGLALSGVGPG 439

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
             D   ++            I +L      +  ++ NI GF + S   L  S+   R   
Sbjct: 440 TWDKLIENG----------QIESLLDWMTLNHAELANIPGFAEHSSAKLLASLQTARERP 489

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            + ++ ++G+   G+                    +N               P +G   A
Sbjct: 490 FQTWLKAIGLPPTGSAT----------------LPDNWQELAGRSVEQWQAEPGIGPGRA 533

Query: 610 QAIVEFYQNPRNICAVEALLKEV 632
             +  F+Q P        L  + 
Sbjct: 534 AKLRSFFQAPEVQALSHQLQAQG 556


>gi|270265241|ref|ZP_06193503.1| DNA ligase B [Serratia odorifera 4Rx13]
 gi|270040875|gb|EFA13977.1| DNA ligase B [Serratia odorifera 4Rx13]
          Length = 567

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 115/619 (18%), Positives = 214/619 (34%), Gaps = 93/619 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            E+ + E+++L+ ++   D  YYQ    +I D  YD+L+++   + H    L R E+P+ 
Sbjct: 32  PERLQLEITALKNQLERWDVAYYQQGDSLIEDQVYDSLRQKLQ-LWHRCAGLERVEEPSS 90

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
                     L   K  H +    L K+ +   + +++      W           ++PK
Sbjct: 91  ---------LLPAGKTPHPVAHTGLHKLADPAAVDQWLRGRSDVW-----------VQPK 130

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  IT+ Y  G+   A  RG+G  GE+    +RAIP IP  +    P  + ++GE+++
Sbjct: 131 VDGVAITLVYRDGELAAAVSRGNGLQGENWLEKVRAIPAIPAAVKDA-PATLILQGELFL 189

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
             N                  N R+  +G L +   + + + +  FV       +     
Sbjct: 190 MVNGHQQKIH--------GGINARSTVAGALMKNRLSPVLQQIGLFVWAWPDGPKEM--- 238

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             + LQ++  +GFP+     Q  +           +  R  LP+  DG+V         +
Sbjct: 239 -TQRLQQLAAMGFPLALAYSQPVSSLD-DVRQWRERWYREALPFVTDGVVIHQARSPQGR 296

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
               +     W ++ K+   Q   R+ D++  +GRTG +  V +L+P+ +    ++   L
Sbjct: 297 YWQAKPGD--WAVAWKYPPVQQVARVNDVEFSVGRTGKIAVVLKLDPLRMDDKWVSRVNL 354

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                                +  GD+V +   G  IP++  +                 
Sbjct: 355 -----------GSLPRWRQWAVVPGDQVAISLMGNGIPRLDKVAWR-------------- 389

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGL-ACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
                +    + +        A  C   L  C  Q L RL          + G+ +    
Sbjct: 390 -----TTERIEPSAPAADRYHALSCFTWLPECRQQFLARLVWLGGPQGLGLHGVSESTWQ 444

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                      +R   D   L   Q  S        G GD    +++      R     R
Sbjct: 445 VLIDQ----GLVRHLLDWLVLTPEQLMSA------PGIGDKRGRSIHRQFQLARQQPFAR 494

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           ++ +LG+     +      +   S+    Q                     +G   A+ I
Sbjct: 495 WLIALGVPLSLQQT-----QALKSWHQIRQLPVGEWRKMT----------GIGAKKAEQI 539

Query: 613 VEFYQNPRNICAVEALLKE 631
             F Q+P  +  V  L  +
Sbjct: 540 TGFLQHPPFLTLVSTLEAQ 558


>gi|325271326|ref|ZP_08137858.1| NAD-dependent DNA ligase LigB [Pseudomonas sp. TJI-51]
 gi|324103542|gb|EGC00857.1| NAD-dependent DNA ligase LigB [Pseudomonas sp. TJI-51]
          Length = 562

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 117/630 (18%), Positives = 221/630 (35%), Gaps = 95/630 (15%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + +Q   E++ L + +   DD Y++    ++ D  YD  ++R   +   F          
Sbjct: 27  NPQQVASEVAQLRKTLGSWDDHYHRQGIALVPDELYDQSRQRLAQLQQCF------GLAG 80

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
           GP       +  +   V H IP   ++K+ +   +++++                  ++P
Sbjct: 81  GP-----APLANAGGPVPHPIPHTGIDKLHDRHAVQRWLA-----------GKADVWVQP 124

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +++ Y +G+ V    RG+G  G D S  I  + +I R L   +   ++++GE+Y
Sbjct: 125 KVDGVAVSLIYREGRLVQLISRGNGAQGHDWSRHIPQLGSITRQLPQAM--DLQLQGELY 182

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +  N             +   A  R+  +G+L R   +                     +
Sbjct: 183 LRLNA--------HVQAQAGGAKARDTVAGLLARKRLSSEQGEAVGLF---VWDWPQGPE 231

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            Q E L ++  LGF  +     A       + + E     + LP+  DG+V +       
Sbjct: 232 QQAERLAQLAQLGFADSQRYSVAINTLDEAAQWREH-WYHAALPFASDGVVLRQGSR--P 288

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
                +A++P W+ + K+   QA   + D+  ++GRTG +TPV  L PV +    +T  +
Sbjct: 289 PAERWQAKAPYWLAAWKYPYMQALAEVRDVRFRVGRTGRVTPVLHLLPVTLDNRRVTQVS 348

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           +                    DIR GD+V V  AG  IP++  ++               
Sbjct: 349 M-----------GSLARWHSLDIRPGDQVAVSLAGLTIPRLEQVVHRAVE---------- 387

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
                       +         AH C    + C  Q + RL     +    +   G    
Sbjct: 388 ---------RVPVAAPAADQYHAHSCWQASVGCEEQFIARLAWLSGKHGLALLRTGPGTW 438

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                    A       D   L        T++  + G  + +   L  S N  R  S +
Sbjct: 439 RRLV----AAGLATSLTDWLQLDA------TRLSEVAGISERTAAQLRSSFNDARTRSFD 488

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           +++  LG                 +      +   + A   D W +L   P +G+  A+ 
Sbjct: 489 QWLRGLGAP-------------LPNGMQITGDWQALAARTADTWQAL---PGIGEKRARQ 532

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
           +V+F+           L +       R ++
Sbjct: 533 LVDFFAAAEVRAIATQLGEHGIEGFERPKQ 562


>gi|320326326|gb|EFW82379.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 561

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 112/623 (17%), Positives = 204/623 (32%), Gaps = 102/623 (16%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PDLARSED 70
            +AR E+++L+Q+++  +D Y++     I D  YD  +++ +     F    P+    + 
Sbjct: 31  AKARSEVTNLQQQMAAWNDSYHRQGISHIPDELYDQARQKLNLWRSCFAVPPPEADPLKT 90

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             GPL               H +    + K+ +   ++ ++      W           +
Sbjct: 91  AVGPL--------------PHPVAHTGVNKLADESSVKDWLEGRNDLW-----------I 125

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ YE G+ V A  RGDG  G+D ++  R I TIP    L  PE   ++GE
Sbjct: 126 QPKVDGVAVTLVYENGQLVQAISRGDGRKGQDWTSQARLIKTIP--QHLPQPESAILQGE 183

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +Y   +D                 N R+  +G+L                  +G     +
Sbjct: 184 LYWRLDD--------HIQSASGSVNARSKVAGLLA------RQTISPQQADAIGLFVWDW 229

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             G  +M Q++  L           +      +     +      P         + +  
Sbjct: 230 PNGPGDMAQRLAGLQAMGFEDSAAYSHPLENYAKAARWREHWYRNPLPFATDGVIMRQGQ 289

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
                  +A +P W+ + K    QA   +  +   +GR+G +TPV  L PV +    ++ 
Sbjct: 290 RPPMQRWQASAPYWIAAWKHPYAQALAEVRKVSFNVGRSGRITPVLELTPVRLDDRTVSR 349

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            +                     DIR GD+V V  AG  IP++  +I             
Sbjct: 350 IS-----------TGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRAAERVEMII-- 396

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
                                      C      C +Q   RL     +    + G+G  
Sbjct: 397 -----------------PQADDFHELSCWQATPGCESQFRARLIWLSGKKGLALPGVGPG 439

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
             D   ++            I +L      +  ++ NI GF + S   L  S+   R   
Sbjct: 440 TWDKLIENG----------QIESLLDWMTLNHAELANIPGFAERSSAKLLASLQTARERP 489

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            + ++ ++G+   G+                    +N               P +G   A
Sbjct: 490 FQTWLKAIGLPPTGSAT----------------LPDNWQELAGRSVEQWQAEPGIGPGRA 533

Query: 610 QAIVEFYQNPRNICAVEALLKEV 632
             +  F+Q P        L  + 
Sbjct: 534 AKLRSFFQAPEVQALSHQLQAQG 556


>gi|289672514|ref|ZP_06493404.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. syringae
           FF5]
          Length = 561

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 115/614 (18%), Positives = 211/614 (34%), Gaps = 96/614 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +AR E+++L+Q+I+  DD Y++     I D  YD  +++       F   A S
Sbjct: 25  CPDWSAAKARSEITALQQQIAAWDDSYHRQGISQIPDELYDQARQKLSLWRSCF---AVS 81

Query: 69  EDPNGPLNK-IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              + PL   +G           H +P   + K+ +   ++ ++      W         
Sbjct: 82  TPESNPLKTAVGPLP--------HPVPHTGVNKLADEGSVKDWLKGRNDLW--------- 124

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
             ++PK+DG  +T+ YE+G+ V A  RGDG  G+D ++  R I TIP+ L      +  +
Sbjct: 125 --IQPKVDGVAVTLVYEQGQLVQAISRGDGRKGQDWTSQARLIKTIPQQLPQAESPV--L 180

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247
           +GE+Y   +D +               N R+  +G+L                  +G   
Sbjct: 181 QGELYWRLDDHIQAAS--------GSVNARSKVAGLLA------RQTISPQQADAIGLFV 226

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
             +  G  +M Q++  L                  +     +      P         + 
Sbjct: 227 WDWPNGPADMAQRLAGLQAMGFEDSAAYTHPLQNYAQAARWREHWYRNPLPFATDGVIMR 286

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +         +A +P W+ + K    QA   +  ++ +IGR+G +TPV  L PV +    
Sbjct: 287 QGQRPPAQRWQASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDRT 346

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  +                     DIR GD+V V  AG  IP++  ++          
Sbjct: 347 VSRIS-----------TGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVVSRAAERADMI 395

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGL 486
                                         C      C +Q   RL     +    + G+
Sbjct: 396 I-------------------PRADDFHELSCWQATPGCESQFRARLAWLSGKKGLALPGV 436

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G    +   ++      +    D  TL   +  +      I GF + S   L DS+   R
Sbjct: 437 GPGTWNTLIENGQIMGLL----DWMTLNHAELVN------IPGFAERSSAKLLDSLQTAR 486

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
               + ++ ++G+   G                 A+  +N     +         P +G 
Sbjct: 487 ERPFQTWLKAIGLPPTGG----------------ARLPDNWHELADRSVEQWQAEPGIGP 530

Query: 607 IIAQAIVEFYQNPR 620
             A  +  F+Q+P+
Sbjct: 531 GRAARLRAFFQDPQ 544


>gi|253690568|ref|YP_003019758.1| DNA ligase (NAD(+)) [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|259494926|sp|C6DJC3|LIGB_PECCP RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|251757146|gb|ACT15222.1| DNA ligase (NAD(+)) [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 562

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 114/615 (18%), Positives = 224/615 (36%), Gaps = 90/615 (14%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           +KE+ +L Q++   DD YY   K  + D  YD L+ + +     F           P   
Sbjct: 35  KKEIDALRQQLEQWDDVYYTEGKSPVADDVYDQLREQLNQWLGCF----------QP-QS 83

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
           +         K  H +    L+K+ + E L ++I +    W           ++PKIDG 
Sbjct: 84  VASVRLPDHGKQLHPVAHTGLKKLSDREQLVQWIAQREDVW-----------IQPKIDGV 132

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+ Y+ GK   A  RG+G  GED +  +R IP IP +L+     ++ ++GE+++   D
Sbjct: 133 AVTLVYQHGKLESAVSRGNGLQGEDWTEKVRLIPEIPHLLTNVPS-LLVLQGELFLKMTD 191

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
                      G     N R+  +G +RR  P+ +   +  F+       +   +   ++
Sbjct: 192 -----HRQHIQGG---VNARSVVAGEMRRHQPSPVLSQIGLFIWEWPDGPKTMPERLEKL 243

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
            +    +     + +           Y+       + LP+  DG+V +  +    +    
Sbjct: 244 TEMGFAMTADYTHAIGSFADAEKWHHYWY-----HNPLPFVTDGVVLRQTKEPQGRYWRN 298

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
            +    W I+ K+        ++D+   +GRTG L  V +L  + +    ++   +    
Sbjct: 299 TSAD--WAIAWKYPPFHQVAEVIDVVFSVGRTGKLAVVLKLNLLKLDDKSVSRVNV---- 352

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
                           D+  GDRV V  AG+ IP++ +++                    
Sbjct: 353 -------GSLSRWKQWDVLPGDRVSVSLAGQGIPRLDNVVWRS----------------- 388

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            +  +  ++P      A         C  Q L RL         N+ G+         + 
Sbjct: 389 -TERLPIVSPSEHDFHAFSCFRYSTVCQQQFLARLVWLSGEHGLNLTGVRDGMWLRLMQH 447

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +       +L   Q  +      + G GD    ++Y S+   R + L R++ +L
Sbjct: 448 ----GLLEDVLSWLSLTEAQLNA------VTGMGDKRARDIYKSLQSARQMPLSRWLLAL 497

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           G+    + I+   A  ++++    Q         +           +G+  A+ I+ F +
Sbjct: 498 GLPVPRSAIS---ALNHVNWLALQQWTAQQWRQFS----------GIGERRAEEIMAFLK 544

Query: 618 NPRNICAVEALLKEV 632
           +P  +  +  L  E 
Sbjct: 545 HPAVVEFIARLDAEG 559


>gi|207723347|ref|YP_002253746.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) (partial
           sequencecentral part) protein [Ralstonia solanacearum
           MolK2]
 gi|206588546|emb|CAQ35509.1| probable dna ligase (polydeoxyribonucleotide synthase [nad+])
           (partial sequencecentral part) protein [Ralstonia
           solanacearum MolK2]
          Length = 228

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 17/166 (10%)

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG+  + A  ++ LA    +    A            D   L  +P     ++ +++ + 
Sbjct: 70  LGVPKLTATRSKQLATLVPTLAQLATA----------DAAQLEGLP---AEVSASLLGWL 116

Query: 617 QNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
           +   +      ++AL  E+  ++   E      +  K +V TGTL  + R  A+  +   
Sbjct: 117 EADGHRARLAQLDALRAELLAAMPA-ETAEDGALSGKTVVLTGTLPNLTRDAAKAMLEAA 175

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           GA VS  +S+KTD ++ G+  GSKL KA++LGVK+++E   L LLQ
Sbjct: 176 GAKVSGSVSKKTDYVVAGEEAGSKLAKAEELGVKVLDEAGMLALLQ 221



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
           L+ +P VG  +A+AI +F+  P+N  A++ALL       G H  +  
Sbjct: 10  LLTLPDVGATVAEAIADFFDEPKNQQALDALLAAGVAPQGEHPPSAK 56


>gi|271502618|ref|YP_003335644.1| DNA ligase [Dickeya dadantii Ech586]
 gi|270346173|gb|ACZ78938.1| DNA ligase (NAD(+)) [Dickeya dadantii Ech586]
          Length = 561

 Score =  171 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 122/631 (19%), Positives = 233/631 (36%), Gaps = 93/631 (14%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +  P  A S  +A +E++ L Q+++  D+ YY   +  + D  YD L++        F  
Sbjct: 20  KAEPCPAWSPARAEQEIARLGQQLTQWDNAYYDRGQSPVDDQVYDQLRQTLATWQVCF-- 77

Query: 65  LARSEDPNGPLNKIGGEMN-LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
                D +      G  ++  S  K  H +    L+K+    +L+++I +    W     
Sbjct: 78  ---QADAD------GFAVSLPSSGKQPHPVAHTGLKKLTEPAELKQWIAQHRNLW----- 123

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
                 ++PKIDG  +T+ YE+GK V A  RG+G  GED +  +R +  +P+ LS  I  
Sbjct: 124 ------IQPKIDGVAVTLVYEQGKLVSAISRGNGRQGEDWTDKVRQMNAVPQQLSG-ISG 176

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243
            + ++GE+Y+S               +    N R   +G +RR  P+ +   ++ F+   
Sbjct: 177 RLVLQGELYLS--------VTAHRQQQTGGINARAQVAGEMRRKQPSPLLSRIDVFIWAW 228

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                  +      L  +R LGF +     Q        + + E +  ++ LP+  DG+V
Sbjct: 229 PDGPADMS----TRLAALRELGFGLTADYTQPIASFEEAARWRE-RWYQAPLPFVTDGVV 283

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
               +         +     W ++ K+      T +  +D++IGRTG +T V +++P+ +
Sbjct: 284 LHQSQ--EPAGRYWQDTPAEWAVAWKYPLVNRVTEVTGVDVEIGRTGRMTVVLQVQPMML 341

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
               ++   L                    D+  GDRV +  AG  IP++  ++      
Sbjct: 342 DDKNVSRVNL-----------GSVSRWRQWDVLPGDRVSISLAGLGIPRLDAVVWRGAVR 390

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFN 482
           +A      S                         C     AC  Q L RL     R+  +
Sbjct: 391 EAISVPVAS-------------------SFDVFSCLQWSKACQPQFLARLVWMSGRNGLS 431

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           + G+ +       +       +        L+  Q  +         F    V  +Y   
Sbjct: 432 LSGISEGTWRRLIQQGKVIDVVS----WLALEPAQLAAGGD------FDKQHVERIYHQF 481

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + R   L +++ +LG+  + +   ++L                +   +   W       
Sbjct: 482 QRARRQPLRQWLLALGL-PLPSSARQALD---------GASFEQLQQRSVAQWQQFS--- 528

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
            +G   AQ I +F  +P  +  +  L ++  
Sbjct: 529 GIGVRRAQRIRDFLHHPEIVRQLTWLNEQGV 559


>gi|104783946|ref|YP_610444.1| NAD-dependent DNA ligase LigB [Pseudomonas entomophila L48]
 gi|123255217|sp|Q1I3X5|LIGB_PSEE4 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|95112933|emb|CAK17661.1| putative DNA ligase, NAD-dependent [Pseudomonas entomophila L48]
          Length = 557

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 116/625 (18%), Positives = 215/625 (34%), Gaps = 95/625 (15%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P      ++AR E+S L + +S+ DD Y++    ++ D  YD  ++    +   F DLA 
Sbjct: 22  PCPDWPAQRARAEVSQLLKTLSHWDDHYHRQGVALVADELYDQSRQHLRHLQGCF-DLAS 80

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           ++            +  +  +V H +P   ++K+ +   +++++      W         
Sbjct: 81  ND----------APLATARGQVPHPVPHTGVDKLRDEPAVQRWLQGRQGMW--------- 121

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
             ++PK+DG  +++ Y++G+      RGDG  G D S  I  +  I  V  L  P     
Sbjct: 122 --IQPKVDGVAVSLVYQQGQLTQLLSRGDGVLGHDWSRHIPQLGRI--VRQLPQPLDTVF 177

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247
           +GE+Y    D                AN R   +G+L R   +D          G+G   
Sbjct: 178 QGELYWRLAD--------HVQAEAGSANARGIVAGLLARKQLSDEQGS------GIGLFV 223

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
             +  G     +++  L        ++ +            +                + 
Sbjct: 224 WDWPAGPGSQAERLAQLTALGFIDSQRFSVAIEGFDAAAHWRQHWYRTALPFATDGVILR 283

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           + +       RA++P W+ + K+   QA  ++ DI  +IGRTG +TP+ +LEP+ +    
Sbjct: 284 QDARPPAQRWRAQAPYWIAAWKYPFSQALAQVRDIHFRIGRTGRITPLLQLEPIQLDDRR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           I+  +L                    DIR GD+V V  AG  IP+V  ++          
Sbjct: 344 ISQVSL-----------GSLARWTQLDIRPGDQVAVSLAGLTIPRVESVVHR-------- 384

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGL 486
                      S +   +            C     AC  Q L RL         ++ G+
Sbjct: 385 -----------SPLRAPVLVPDPADHHLLSCWQASPACQEQFLARLAWLGGNKGLDMAGV 433

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G        +S   A          TL    + +   +  + G        L  + +  R
Sbjct: 434 GSGVWHQLVESGKVA----------TLSDWLELTREDLLEVPGIAQARAERLLQAFSLGR 483

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
               ER++  LG+             ++           +  A  + +    +  P VG 
Sbjct: 484 RQPFERWLRGLGLPA---------PSHF-------SPGADWSALASRNIEQWLAEPGVGA 527

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE 631
           + A  +  F  + +       L   
Sbjct: 528 VRAAQLQAFLSHEQVQALARRLRAH 552


>gi|32396672|gb|AAP49293.1| NAD-dependent DNA ligase [Geobacillus thermodenitrificans]
 gi|32396682|gb|AAP49297.1| NAD-dependent DNA ligase [Bacillus coagulans]
          Length = 107

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 8/115 (6%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D+EYD L +   AI   +P+L  S   + P  +IGG    +  KVTH +P +SL   ++ 
Sbjct: 1   DAEYDRLMQELMAIEEQYPELKTS---DSPTQRIGGPPLEAFRKVTHVVPMMSLANAFDE 57

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHS 159
            DLR F  R+      ++     +  E KIDG  +++RYE G FV  A RGDG +
Sbjct: 58  GDLRDFDRRVR-----QEVGEAAYVCELKIDGLAVSVRYEDGYFVQGATRGDGTT 107


>gi|32482045|gb|AAP49289.1| NAD-dependent DNA ligase [Bacillus sp. IMG-1]
          Length = 107

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 8/115 (6%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D+EYD L +   AI   +P+L  S   + P  +IGG    +  KV H +P +SL   +  
Sbjct: 1   DAEYDRLMQELIAIEEQYPELKTS---DSPTQRIGGPPLEAFRKVAHPVPMMSLANAFGE 57

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHS 159
            DLR F  R+      ++     +  E KIDG  +++RYE G FV  A RGDG +
Sbjct: 58  GDLRDFDRRVR-----QEVGEAAYVCELKIDGLAVSVRYEDGYFVQGATRGDGTT 107


>gi|58699501|ref|ZP_00374229.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58533981|gb|EAL58252.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 143

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 12/146 (8%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
             L+ +I+YH+  Y+Q +KP I D+EYD LK++   I    P++  +++       +G  
Sbjct: 9   EKLQDQINYHNVLYHQKNKPEISDAEYDELKKKLAEIE---PEIYATQES------VGAP 59

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141
            +    KV H  P LSLE  ++ + + KF+++I RF  +   + I    EPKIDG   + 
Sbjct: 60  PDERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLIE---DKIEILCEPKIDGLSFSA 116

Query: 142 RYEKGKFVYAALRGDGHSGEDVSACI 167
            YE G+FV AA RGDG  GEDV+  +
Sbjct: 117 IYEDGRFVKAATRGDGFVGEDVTHNV 142


>gi|123440450|ref|YP_001004444.1| NAD-dependent DNA ligase LigB [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166226365|sp|A1JHV9|LIGB_YERE8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|122087411|emb|CAL10192.1| putative DNA ligase [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 565

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 106/632 (16%), Positives = 211/632 (33%), Gaps = 93/632 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S E+   E+  LE+++   +  Y+Q     I D  YD L+ +              
Sbjct: 27  CPEWSEERMSGEMHLLEKQLDQWNIAYHQQGISPIADDIYDQLQDKLHRWR------LCL 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+   N+          K+ H +    L+K+ +   L  ++T     W          
Sbjct: 81  GLPDKTDNR----PIPGNGKMLHPVAHTGLKKLKDEAALISWMTGRKNLW---------- 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PKIDG  +T+ Y+ GK      RG+G  G++ +     I  IP+ ++   P ++ ++
Sbjct: 127 -VQPKIDGVAVTLVYQAGKLTQVLSRGNGLKGQNWADKAPFISAIPQYIASAPP-LLTLQ 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GEV++                    AN R + +G L R + + +   L  F+       +
Sbjct: 185 GEVFLQMEGHQQAQS--------GGANARASVAGALMRKSVSPLLAKLGIFIWAWPDGPK 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E  + ++ +GFP+     +              +  +  LP+  DG+V + + 
Sbjct: 237 SMV----EKSRLLQEMGFPLTAHYSE-PVISSSDVALWRDRWFKMPLPFVTDGVVIRQEN 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W ++ K+   Q  T + DI   +GRTG +T + ++ PV I    I
Sbjct: 292 VPAGRYWQATPG--NWSVAWKYPPPQQITEIKDIHFTVGRTGKITAILQVIPVKIDDKWI 349

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD+V +  AG+ IP++  +I           
Sbjct: 350 RRVNI-----------GSIARWKQWDIVPGDQVTISLAGQGIPRLDKVIWRVSQ------ 392

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
                         +++ P          C   L    +     +         ++   +
Sbjct: 393 -------------RQEIVPPDADKFHQLTCFRRLPFECEPQFLSRLAWLSGTNGLDM--Q 437

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
              +  ++       I    D  +L   Q      I  + G G      +Y    + R  
Sbjct: 438 SVGNGLWRELIHHGFINGLLDWLSLSVEQ------IAAVPGIGQGRAEKIYQQFQRARQQ 491

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              +++ +LG               +          +++   +  +W  +   P +G + 
Sbjct: 492 PFSQWLQALG---------------FPQGIPLDTSWHSLRQRSIAEWRLM---PGIGQVR 533

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
           A+ I  F  +P      + L ++        E
Sbjct: 534 AKQINHFLHHPEVQMMADFLSQQGIAGFSPEE 565


>gi|330501400|ref|YP_004378269.1| NAD-dependent DNA ligase LigB [Pseudomonas mendocina NK-01]
 gi|328915686|gb|AEB56517.1| NAD-dependent DNA ligase LigB [Pseudomonas mendocina NK-01]
          Length = 564

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 123/634 (19%), Positives = 219/634 (34%), Gaps = 94/634 (14%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
           P    +  +A  EL +L ++I+  DD Y+     ++ D  YD  + R  A    FP    
Sbjct: 19  PCPNWADARAAMELGALSRQIAEWDDAYHNQGHSLVADEIYDQARGRLQAWHQCFPTALD 78

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           +             +  S  K+ H +    L K+ N   + ++I      W         
Sbjct: 79  NLPE---------PLAGSTGKLAHPVAQTGLRKL-NDAAVAEWIASRSDLW--------- 119

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
             ++PK+DG  +T+ Y  G   +A  RGDG  G+D +A  R +P +P  L   +  +  +
Sbjct: 120 --IQPKVDGVAVTLVYRHGVLQHAVSRGDGRHGQDWTARARQLPGVPTRLPEPLDAV--L 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247
           +GE+Y   N      + + +      A  + A     + L+  +      F         
Sbjct: 176 QGELYWRLN------EHVQSRDGGAGARGKVAGLMARQTLDQHEADAIGLF-----VWDW 224

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               +   E LQ +  LGF  +    QA       S     +      P+  DG+V +  
Sbjct: 225 PDGPEQMPERLQALHRLGFSDSLQYTQALRSPDQASL-WRQRWFDQPQPFASDGVVLRQG 283

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                     +A +P W I+ K+   QA   +  +   IGRTG +TP+  L+PV++    
Sbjct: 284 TR--PSGERWQAEAPHWAIAWKYPASQALAVVQAVHFSIGRTGRITPILHLQPVDLDERR 341

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           I+   L                    DIR GD+V ++ AG  IP++  +I          
Sbjct: 342 ISRVAL-----------GSLQSWEKLDIRPGDQVSIRLAGLTIPRLDQVIWR-------- 382

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGL 486
                      S     ++        A  C      C  Q L RL     +   N+ GL
Sbjct: 383 -----------SPERAVVHAPDPDQYHALSCWRLSAECRQQFLARLNWLAGKQGLNLNGL 431

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G         SE     +             +  + +++ + G G    + L  S  + +
Sbjct: 432 GPGTWSTLLASEQLDGLL----------DWLEFDSQRLQQLPGIGPRRASQLQQSFAQAQ 481

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             SL++++ +LG                          ++       +    ++ P +  
Sbjct: 482 QRSLQQWLQALGAPP----------------DLKLGAEDDWATLLTRNRAEWMQQPGMSQ 525

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
             A+ ++ F+ +P      E L +         E
Sbjct: 526 KSAERLLAFFSHPEVQRLGERLQRAGIAGFQPRE 559


>gi|227327138|ref|ZP_03831162.1| NAD-dependent DNA ligase LigB [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 563

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 120/618 (19%), Positives = 225/618 (36%), Gaps = 98/618 (15%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI----AHAFPDLARSEDPNGP 74
           KE+ +L  ++   DD YY   K  I D  YD L+ + +          P       P+  
Sbjct: 37  KEIDALRHQLEQWDDVYYTEGKSPIEDDVYDQLREQLNQWLGCFQPQNP--IPVRLPDN- 93

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
                        K +H +    L+K+ +   L ++I +    W           ++PK+
Sbjct: 94  ------------GKQSHPVAHTGLKKLSDRRQLMQWIAQREDLW-----------IQPKV 130

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +T+ Y+ GK V A  RG+G  GED +  +R IP IP +L+     +  ++GE+++ 
Sbjct: 131 DGVAVTLVYQHGKLVSAVSRGNGLQGEDWTEKVRLIPGIPHLLTDAPSSL-VLQGELFL- 188

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
                  N +    G     N R+  +G +RR  P+ +   +  FV       +      
Sbjct: 189 ----KMTNHQQRTQGG---VNARSVVAGEMRRHQPSPVLSQIALFVWEWPDGPKTMP--- 238

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            E L+K++ +GF +      A       +           LP+  DG+V +  +    + 
Sbjct: 239 -ERLEKLKEMGFAMTADYTHAIGSFA-DAEKWRHDWYHGPLPFVTDGVVIRQTKEPQGRY 296

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
               +    W I+ K+        + D+   +GRTG +  V +L P+ +    ++   + 
Sbjct: 297 WRNTSAD--WAIAWKYPPVNQVAEVADVAFSVGRTGKIAVVLKLNPLKLDDKSVSRVNV- 353

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
                              D+  GDRV V  AG+ IP++ +++                 
Sbjct: 354 ----------GSLSRWKQWDVLPGDRVSVSLAGQGIPRLDNVVW---------------- 387

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
               +     + P      A         C  Q L RL          + G+ +      
Sbjct: 388 --RGTERPAIVFPSEHDFHAFSCFRYSAVCQQQFLARLVWLSGDHGLKLAGVREGMWLRL 445

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            + +     +       +L   Q  +      + G GD    ++YDS+   R + L R++
Sbjct: 446 IQHD----LLEDVLSWLSLTEAQLNA------VNGMGDKRARDIYDSLQSARQMPLSRWL 495

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F+LGI    + I+               +  + +A          +   +G+  A+ I+ 
Sbjct: 496 FALGIPVPRSAISAL-------------DDVDWLALQQWTAQQWRQFSGIGERRAEEIMA 542

Query: 615 FYQNPRNICAVEALLKEV 632
           F ++P  +  +  L +E 
Sbjct: 543 FLKHPIVVELITRLDREG 560


>gi|170719684|ref|YP_001747372.1| NAD-dependent DNA ligase LigB [Pseudomonas putida W619]
 gi|257096560|sp|B1J2Z7|LIGB_PSEPW RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|169757687|gb|ACA71003.1| DNA ligase (NAD(+)) [Pseudomonas putida W619]
          Length = 567

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 118/617 (19%), Positives = 212/617 (34%), Gaps = 94/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S +QAR E++ L   ++  DD Y++    ++ D  YD  +     +   F      
Sbjct: 23  CPDWSTKQARTEVAQLRATLANWDDHYHRQGIALVADELYDQARHHLLHLQQCFGQEFTD 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P          +  +   + H +    +EK+ +   + +++T     W          
Sbjct: 83  PSP----------LASARGPIAHPVAHTGVEKLHDAAAVARWMTGKKGVW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +++ Y +G+ V    RGDG  G D S  I+ + +I     L  P  + ++
Sbjct: 123 -VQPKVDGVAVSLVYRQGRLVQLLSRGDGLQGHDWSRHIKDLDSI--TRQLPQPLDVVLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+Y+                    +N R   +G+L R     +       +        
Sbjct: 180 GELYLRLQA--------HVQAEAGSSNVRGTVAGMLAR---KQLGPEPGASIGLFVWDWP 228

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q E L ++   GFP +     A       + +  +   RS LP+  DG++ + D 
Sbjct: 229 HGPDNQGERLTQLAAWGFPDSQRFSTAIDTPEE-ATHWRLHWYRSPLPFATDGVILRQDS 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
                    +  +P W+ + K+   QA   + ++   IGRTG +TP+ RL+PV +    I
Sbjct: 288 R--PPADRWQPNAPYWIAAWKYPFAQALAEVREVRFLIGRTGKVTPLLRLKPVTLDDRRI 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
           +  +L                    DIR GD+V +  AG  IP+   ++         P 
Sbjct: 346 SQVSL-----------GSLARWRALDIRPGDQVAISLAGLTIPRFDQVVHRAVERQVLPV 394

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLG 487
                                 +    H C      C  Q + RL     +    + G G
Sbjct: 395 -------------------PEAEQYGQHSCWQASDGCQEQFIARLVWLSGKQGLAMPGTG 435

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           K       +    A  +    D  TL  +Q  S      + G    + T L  S +  RN
Sbjct: 436 KGTWKRLVQ----AGLVTSLTDWLTLDAQQLLS------VPGISRKTATQLQRSFDIGRN 485

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               ++   LG+                      +    +   +  DW +L   P +G  
Sbjct: 486 RPFAQWRKGLGVPAPAQVPR-------------DENWQTLAGRSASDWQTL---PGIGAT 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A  +  F+ + +    
Sbjct: 530 RATQLANFFTHEQVQRI 546


>gi|332159673|ref|YP_004296250.1| NAD-dependent DNA ligase LigB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325663903|gb|ADZ40547.1| NAD-dependent DNA ligase LigB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 565

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 104/632 (16%), Positives = 209/632 (33%), Gaps = 93/632 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               + E+   E+  LE+++   +  Y+Q     I D  YD L+ +              
Sbjct: 27  CPEWTEERMSGEMHILEKQLDQWNIAYHQQGISPIADDIYDQLQDKLHRWR------LCL 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    +          K+ H +    L+K+ +   L  ++T     W          
Sbjct: 81  GLPDKTDIR----PIPGNGKMLHPVAHTGLKKLKDEAALISWMTGRKDLW---------- 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PKIDG  +T+ Y+ GK      RG+G  G++ +     I  IP+ ++   P ++ ++
Sbjct: 127 -VQPKIDGVAVTLVYQAGKLTQVLSRGNGLKGQNWADKAPFISAIPQYIASAPP-LLTLQ 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GEV++                    AN R + +G L R + + +   L  F+       +
Sbjct: 185 GEVFLQMEGHQQAQS--------GGANARASVAGALMRKSVSPLLAKLGIFIWAWPDGPK 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E  + ++ +GFP+     +              +  +  LP+  DG+V + + 
Sbjct: 237 SMV----EKSRLLQEMGFPLTAHYSE-PVISSSDVAQWRDRWFKMPLPFVTDGVVIRQEN 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W ++ K+   Q  T + DI   +GRTG +T + ++ PV I    I
Sbjct: 292 VPAGRYWQATPG--NWSVAWKYPPPQQITEIKDIHFTVGRTGKITAILQVVPVKIDDKWI 349

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD+V +  AG+ IP++  +I           
Sbjct: 350 RRVNI-----------GSIARWRLWDIVPGDQVTISLAGQGIPRLDKVIWRVSQ------ 392

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
                         +++ P          C   L    +     +         ++   +
Sbjct: 393 -------------RQEIVPPDADKFHQLTCFRRLPFECEPQFLSRLAWLSGTNGLDM--Q 437

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
              +  ++       I    D  +L   Q      I  + G G      +Y    + R  
Sbjct: 438 SVGNGLWRELIHHGFINGLLDWLSLSVEQ------IAAVPGIGQGRAEKIYQQFQRARQQ 491

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              +++ +LG               +          +++      +W  +   P +G + 
Sbjct: 492 PFSQWLQALG---------------FPQGIPLDSSWHSLRQRGIAEWRLM---PGIGQVR 533

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
           A+ I  F  +P      + L ++        E
Sbjct: 534 AKQINHFLHHPEVQMMADFLSQQGIAGFSPEE 565


>gi|311277433|ref|YP_003939664.1| DNA ligase (NAD(+)) [Enterobacter cloacae SCF1]
 gi|308746628|gb|ADO46380.1| DNA ligase (NAD(+)) [Enterobacter cloacae SCF1]
          Length = 556

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 124/623 (19%), Positives = 221/623 (35%), Gaps = 94/623 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E+++L  +++   + Y++     + D  YD L  R       F     +E+   
Sbjct: 25  PAKAEQEMAALNAQLTRWSEAYWREGASAVSDEVYDQLSARLKQWQRCFSQERTAEEAPA 84

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
               IGG        V H +    + K+ +   L +++ R  +             ++PK
Sbjct: 85  ----IGGA-------VKHPVAHTGVRKMASKAALEQWM-RTRQGL----------WVQPK 122

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y +G+ V A  RGDG  GED +A  R I  IP+           ++GE++ 
Sbjct: 123 VDGVAVTLVYRQGRLVRAISRGDGLKGEDWTAKARVIAAIPQQTQGP-LANSVLQGEIFW 181

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
                   N     +G     N R  A+G + R +  D   +L  F+       +   + 
Sbjct: 182 R-----QDNHIQQRMGGM---NARAKAAGAMMRQSDGDALAHLGLFIWEWPDGPQTMPER 233

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
              +      L       V          + +       + LP+  DG++ +  +    +
Sbjct: 234 LAALAAAGFRLTADWTLPVNTIGDVEQRRAAWF-----SAPLPFATDGIIIRAAQEPAGE 288

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
           +         W+++ K+A      ++  I   +GRTG +  +A LEPV +    +   +L
Sbjct: 289 RWLPGEGG--WVVAWKYAPASQVAQVKTIRFAVGRTGKVAVIAALEPVVLDDKRVQRVSL 346

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP+V                    
Sbjct: 347 -----------GSVARWRALDIAPGDQILVSLAGQGIPRVDG------------------ 377

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
             +    V R           A  C      C AQ + RL    SR A +IEG+G     
Sbjct: 378 --VVWRGVDRQKPSPPVPRYNALTCLYASPECMAQFIARLVWLSSRQALDIEGVGNAGWQ 435

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
             +++               L    Q +  +++   G        L+   N  R     R
Sbjct: 436 ILYQA----------HHFEHLFSWLQLTPAQLQATPGLSPARGLTLWHRFNLAREQPFIR 485

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           +I ++G        A   A    S+Q   Q        +  DW +L   P +G+  A+ I
Sbjct: 486 WIVAMGA---PLAQAALKAAGDRSWQAMRQ-------RSEADWRTL---PGMGEEKARQI 532

Query: 613 VEFYQNPRNICAVEALLKEVSPS 635
           V +  +P+ + A+   L  +   
Sbjct: 533 VSWLHHPQ-VEALAGWLAGLRIP 554


>gi|318603769|emb|CBY25267.1| DNA ligase, LigB [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 565

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 104/632 (16%), Positives = 209/632 (33%), Gaps = 93/632 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               + E+   E+  LE+++   +  Y+Q     I D  YD L+ +              
Sbjct: 27  CPEWTEERMSGEMHLLEKQLDQWNIAYHQQGISPIADDIYDQLQDKLHRWR------LCL 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+    +          K+ H +    L+K+ +   L  ++T     W          
Sbjct: 81  GLPDKTDIR----PIPGNGKMLHPVAHTGLKKLKDEAALISWMTGRKDLW---------- 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PKIDG  +T+ Y+ GK      RG+G  G++ +     I  IP+ ++   P ++ ++
Sbjct: 127 -VQPKIDGVAVTLVYQAGKLTQVLSRGNGLKGQNWADKAPFISAIPQYIASAPP-LLTLQ 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GEV++                    AN R + +G L R + + +   L  F+       +
Sbjct: 185 GEVFLQMEGHQQAQS--------GGANARASVAGALMRKSVSPLLAKLGIFIWAWPDGPK 236

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E  + ++ +GFP+     +              +  +  LP+  DG+V + + 
Sbjct: 237 SMV----EKSRLLQEMGFPLTAHYSE-PVISSSDVAQWRDRWFKMPLPFVTDGVVIRQEN 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W ++ K+   Q  T + DI   +GRTG +T + ++ PV I    I
Sbjct: 292 VPAGRYWQATPG--NWSVAWKYPPPQQITEIKDIHFTVGRTGKITAILQVVPVKIDDKWI 349

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD+V +  AG+ IP++  +I           
Sbjct: 350 RRVNI-----------GSIARWRLWDIVPGDQVTISLAGQGIPRLDKVIWRVSQ------ 392

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
                         +++ P          C   L    +     +         ++   +
Sbjct: 393 -------------RQEIVPPDADKFHQLTCFRRLPFECEPQFLSRLAWLSGTNGLDM--Q 437

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
              +  ++       I    D  +L   Q      I  + G G      +Y    + R  
Sbjct: 438 SVGNGLWRELIHHGFINGLLDWLSLSVEQ------IAAVPGIGQGRAEKIYQQFQRARQQ 491

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              +++ +LG               +          +++      +W  +   P +G + 
Sbjct: 492 PFSQWLQALG---------------FPQGIPLDSSWHSLRQRGIAEWRLM---PGIGQVR 533

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
           A+ I  F  +P      + L ++        E
Sbjct: 534 AKQINHFLHHPEVQMMADFLSQQGIAGFSPEE 565


>gi|32307199|gb|AAP79092.1| NAD-dependent DNA ligase [Bacillus catenulatus]
          Length = 107

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 8/115 (6%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D+EYD L +   AI   +P+L  S   + P  +IGG    +  KVTH +P +SL   +  
Sbjct: 1   DAEYDLLMQELIAIEEQYPELKTS---DSPTQRIGGPPLEAFRKVTHRVPMMSLANAFGE 57

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHS 159
            DLR F  R+      ++     +  E KIDG  +++RYE G FV  A RGDG +
Sbjct: 58  GDLRDFDRRVR-----QEVGEAAYVCELKIDGLAVSVRYEDGYFVQGATRGDGTT 107


>gi|330980117|gb|EGH78327.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 561

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 114/608 (18%), Positives = 208/608 (34%), Gaps = 96/608 (15%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +A  E+++L+Q+I+  DD Y++     I D  YD  +++          LA S   + P
Sbjct: 31  AKAHSEVTALQQQIAAWDDSYHRQGISQIPDELYDQARQKLSLWRSC---LAVSSPESNP 87

Query: 75  LNK-IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           L   +G           H +P   + K+ +   ++ ++      W           ++PK
Sbjct: 88  LKTAVGPLP--------HPVPHTGVNKLADEGSVKDWLKGRNDLW-----------IQPK 128

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ YEKG+ V A  RGDG  G+D ++  R I TIP+ L      +  ++GE+Y 
Sbjct: 129 VDGVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIETIPQQLPQAESPV--LQGELYW 186

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
             +D                 N R+  +G+L                  +G     +  G
Sbjct: 187 RLDD--------HIQSASGSVNARSKVAGLLA------RQTISPQQADAIGLFVWDWPNG 232

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             +M Q++  L                  +     +      P         + +     
Sbjct: 233 PADMAQRLAGLQAMGFEDSAAYTHPLQNYAQAARWREHWYRNPLPFATDGVIMRQGQRPP 292

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
               +A +P W+ + K    QA   +  ++ +IGR+G +TPV  L PV +    ++  + 
Sbjct: 293 AQRWQASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDRTVSRIS- 351

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DIR GD+V V  AG  IP++  ++                
Sbjct: 352 ----------TGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVVSRAAERADMII----- 396

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
                                   C      C +Q   RL     +    + G+G    +
Sbjct: 397 --------------PRADDFHELSCWQATPGCESQFRARLAWLSGKKGLALPGVGPGTWN 442

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              ++      +    D  TL   +  +      I GF + S   L DS+   R    + 
Sbjct: 443 TLIENGQIIGLL----DWMTLNHAELVN------IPGFAERSSAKLLDSLQTARERPFQT 492

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           ++ ++G+   G                 A+  +N     +         P +G   A  +
Sbjct: 493 WLKAIGLPPTGG----------------ARLPDNWHELADRSVEQWQAEPGIGPGRAARL 536

Query: 613 VEFYQNPR 620
             F+Q+P+
Sbjct: 537 RAFFQDPQ 544


>gi|298489227|ref|ZP_07007245.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298156246|gb|EFH97348.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 561

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 114/623 (18%), Positives = 207/623 (33%), Gaps = 102/623 (16%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PDLARSED 70
            +AR E+++L+Q+++  DD Y++     I D  YD  +++ +     F    P+    + 
Sbjct: 31  AKARSEVTNLQQQMAAWDDSYHRQGISHIPDELYDQARQKLNLWRSCFAVSTPEADPLKT 90

Query: 71  PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130
             GPL               H +    + K+ +   ++ ++      W           +
Sbjct: 91  AVGPL--------------PHPVAHTGVNKLADESSVKDWLKGRNDLW-----------I 125

Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190
           +PK+DG  +T+ YEKG+ V A  RGDG  G+D ++  R I  IP    L+  + + ++GE
Sbjct: 126 QPKVDGVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIKAIP--QHLSHHDSLILQGE 183

Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250
           +Y    D +               N R+  +G+L                  +G     +
Sbjct: 184 LYWRLTDHIQATS--------GSVNARSKVAGMLA------RQTISPQQADAIGLFVWDW 229

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
             G  +M Q++  L      G                 +      P         + +  
Sbjct: 230 PNGPTDMAQRLAGLQAMGFEGSEAYTHSLENHVQAARWREHWYRNPLPFATDGVIMRQGQ 289

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
                  +A +P W+ + K    QA   +  +   IGR+G +TPV  L PV +    ++ 
Sbjct: 290 RPPMQRWQASAPYWIAAWKHPYAQALAEVRKVSFNIGRSGRITPVLELTPVRLDDRTVSR 349

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430
            +                     DIR GD+V V  AG  IP++  +I             
Sbjct: 350 IS-----------TGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRAAE-------- 390

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQ 489
                        ++            C      C +Q   RL     +    + G+G  
Sbjct: 391 -----------RVEMITPQADDFHELSCWQATPGCESQFRARLIWLSGKKGLALPGVGPG 439

Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549
             D   ++            I +L      + T++ NI GF + S   L  S+   R   
Sbjct: 440 TWDKLIENG----------QIESLLDWMTLNHTELANIPGFAERSSAKLLASLQTARERP 489

Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609
            + ++ ++G+   G+                    +N               P +G   A
Sbjct: 490 FQTWLKAIGLPPTGSAT----------------LPDNWQELAGRSVEQWQAEPGIGSGRA 533

Query: 610 QAIVEFYQNPRNICAVEALLKEV 632
             +  F+Q P        L  + 
Sbjct: 534 AKLRSFFQAPEVQALSYQLQAQG 556


>gi|227113300|ref|ZP_03826956.1| NAD-dependent DNA ligase LigB [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 563

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 123/616 (19%), Positives = 227/616 (36%), Gaps = 94/616 (15%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF--PDLARSEDPNGPLN 76
           KE+ +L  ++   DD YY   K  I D  YD L+ + +     F   +   +  P+    
Sbjct: 37  KEIDALRHQLELWDDVYYTEGKSPIEDDVYDQLRDQLNQWLGCFQPKNAIPARLPDN--- 93

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
                      K  H +    L+K+ +   L ++I      W           ++PK+DG
Sbjct: 94  ----------GKQLHPVAHTGLKKLSDRRQLVQWIAPREDLW-----------IQPKVDG 132

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +T+ Y+ GK V A  RG+G  GED +  +R IP IP +L+     +  ++GE+++   
Sbjct: 133 VAVTLVYQHGKLVSAVSRGNGLQGEDWTEKVRLIPGIPHLLTDAPSSL-VLQGELFLKMT 191

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
           D             +   N R+  +G +RR  P+ +   +  FV       +       E
Sbjct: 192 DHRQRI--------QGSVNARSVVAGEMRRHQPSPVLSQIGLFVWEWPDGPKTMP----E 239

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
            L+K++ +GF +      A       +         S LP+  DG+V +  +    +   
Sbjct: 240 RLEKLKEMGFAMTADYTHAIGSFA-DAEKWRHHWYHSPLPFVTDGVVIRQTKEPQGRYWR 298

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
                  W I+ K+        ++D+   +GRTG +  V +L P+ +    +    +   
Sbjct: 299 NTLAD--WAIAWKYPPVHQVAEVVDVAFSVGRTGKVAVVLKLNPLKLDDKSVRRVNV--- 353

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
                            D+  GDRV V  AG+ IP++ +++                   
Sbjct: 354 --------GSLSRWKQWDVLPGDRVSVSLAGQGIPRLDNVVWRS---------------- 389

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
             +     ++P      A       +AC  Q L RL         N+ G+ +       +
Sbjct: 390 --TERPAIVSPNEHDFHAFSCFRYSVACQQQFLARLVWLSGEHGLNLAGVREGMWQRLIQ 447

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            +     +       +L   Q  +      + G GD    ++Y S+   RN+ L R++ +
Sbjct: 448 HD----VLEDVLSWLSLTEAQLNA------VNGMGDKRARDIYTSLQSARNMPLSRWLLA 497

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LGI  V    + +L                 +A          + P +G+  A+ I+ F 
Sbjct: 498 LGI-PVPRSASSALDNV------------GWLALQQWTAQQWRQFPGIGEGRAEEIMAFL 544

Query: 617 QNPRNICAVEALLKEV 632
           ++P  +  +  L +E 
Sbjct: 545 KHPIVVELIARLDREG 560


>gi|238750790|ref|ZP_04612288.1| DNA ligase B [Yersinia rohdei ATCC 43380]
 gi|238710934|gb|EEQ03154.1| DNA ligase B [Yersinia rohdei ATCC 43380]
          Length = 563

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 106/637 (16%), Positives = 210/637 (32%), Gaps = 93/637 (14%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
           R        S ++A  E++ L ++++  D  Y+Q    ++ D  YD L+ +         
Sbjct: 20  RAKPVCPEWSEKRASDEINILVKQLNQLDVAYHQQGISLLDDDIYDQLQDKLHGWREC-- 77

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
            L   +  N         +     K+ H +    L+K+ +   L  +++     W     
Sbjct: 78  -LGLPDKANN-------TLIPGDGKLLHPVAHTGLKKLKDENALADWMSGREDLW----- 124

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
                 ++PK+DG  +T+ Y+ G+ +    RG+G  G + +     I  IP+      P 
Sbjct: 125 ------VQPKVDGVAVTLVYQAGELIQLLSRGNGLKGLNWTDKAPFISAIPQH-ISMAPP 177

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243
            + ++GE+      FL ++           A    A + + + ++P      +       
Sbjct: 178 WLTLQGEL------FLQMDGHQQVQSGGVNARASVAGALMRKTMSPLLANLGVFI----- 226

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                   K   E    ++ +GFP+     +                 ++ LP+  DG+V
Sbjct: 227 -WAWPDGPKNLVEKTTLLQEMGFPLAAKYSK-PVTSSQDVMQWRDFWYQTPLPFVTDGVV 284

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            + +E    +     +    W ++ K+   Q +T + DI   IGRTG +T V ++ PV I
Sbjct: 285 IRQEEEPAGRYWRAASG--NWSVAWKYPPLQKTTEIQDIHFTIGRTGKITVVLQVAPVKI 342

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
               I    +               +    +I VGD+V +  AG+ IP++ +++      
Sbjct: 343 DDKQIRRVNI-----------GSLALWRQWNIAVGDQVTITLAGQGIPRLENVVWRVSQR 391

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483
           +                       K      +      L C  Q L RL         ++
Sbjct: 392 E-----------------YLIPPEKDKFHPLSCFRLLPLECEPQFLSRLAWLSGPKGLDM 434

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
             +G+     F++       I       +L   Q  +      + G G V    +Y    
Sbjct: 435 RNVGRG----FWREIVRHGLINDMVGWLSLTAEQIAT------VPGIGRVRAEKIYQQFQ 484

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             R     +++ +LG    G   +                                 +  
Sbjct: 485 NTRLKPFSQWLPALGFPLGGVVDSH------------------WHPLQQRSIAEWRLISG 526

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
           +G + A+ I  F  +P      + L ++        E
Sbjct: 527 IGAVRAKQINHFLSHPEVQEMADFLSQQGIAGFRPEE 563


>gi|330972946|gb|EGH73012.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 561

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 110/607 (18%), Positives = 204/607 (33%), Gaps = 94/607 (15%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR E ++L+Q+I+  DD Y++     I D  YD  +++ +     F       DP   
Sbjct: 31  AKARSEATALQQQIAEWDDSYHRQGISQIADELYDQARQKLNLWRSCFAVSIPESDP--- 87

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
                  +  ++  + H +P   + K+ +   ++ ++      W           ++PK+
Sbjct: 88  -------LKTAVGPLPHPVPHTGVNKLADEGSVKDWLKGRNDLW-----------IQPKV 129

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +T+ YEKG+ V A  RGDG  G+D ++  R I  I     L   E   ++GE+Y  
Sbjct: 130 DGVAVTLVYEKGRLVQAISRGDGRKGQDWTSQARLIKAIA--QQLPQAESTILQGELYWR 187

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
            +D +               N R+  +G+L                  +G     +  G 
Sbjct: 188 LDDHIQAAS--------GSVNARSKVAGLLA------RQTISPQQADAIGLFVWDWPNGP 233

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            +M Q++  L                  +     +      P         + +      
Sbjct: 234 ADMAQRLAGLQAMGFEDSAAYTHPLENYAQAARWREHWYRNPLPFATDGVIMRQGQRPPA 293

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
              +A +P W+ + K    QA   +  ++ +IGR+G +TPV  L PV +    ++  +  
Sbjct: 294 QRWQASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDRTVSRIS-- 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
                              DIR GD++ V  AG  IP++  ++                 
Sbjct: 352 ---------TGSLQRWQTLDIRPGDQIAVSLAGLTIPRLDGVVSRTAERADMII------ 396

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                                  C      C +Q   RL     +    + G+G    + 
Sbjct: 397 -------------PRADDFHELSCWQATPGCESQFRARLAWLSGKKGLALPGVGPGTWNT 443

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
              +      +    D  TL   +  +      I GF + S   L DS+   R    + +
Sbjct: 444 LIDNGQIMGLL----DWMTLNHAELVN------IPGFAERSSAKLLDSLQTARERPFQTW 493

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           + ++G+   G                 A+  +N               P +G   A  + 
Sbjct: 494 LKAIGLPPTGG----------------ARLPDNWHELAGRSVEQWQAEPGIGPGRAARLR 537

Query: 614 EFYQNPR 620
            F+Q+P+
Sbjct: 538 AFFQDPQ 544


>gi|238759846|ref|ZP_04621002.1| DNA ligase B [Yersinia aldovae ATCC 35236]
 gi|238701907|gb|EEP94468.1| DNA ligase B [Yersinia aldovae ATCC 35236]
          Length = 532

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 106/615 (17%), Positives = 204/615 (33%), Gaps = 98/615 (15%)

Query: 20  ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF-PDLARSEDPNGPLNKI 78
           E+  L +++   D  Y+Q     I D  YD L  +         P   +           
Sbjct: 4   EIKELTKQLGKWDIAYHQQGHSPIADDAYDQLVAKLHQWQLCHLPHGKQENK-------- 55

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
             +  L   + +H +    L+K+ +   L  ++      W           ++PK+DG  
Sbjct: 56  --QPILGNGQFSHPVAHTGLKKLKDEATLVSWMKGRKNLW-----------VQPKVDGVA 102

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +++ Y  G+      RG+G  G++ +     I  IP+ +    P ++ ++GE+++     
Sbjct: 103 VSLVYVNGELTQLISRGNGLKGQNWTDKATFISAIPQFIVAAPP-LLTLQGELFLKMEGH 161

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
                           N R + +G L R +P+ +   L      L        K   E  
Sbjct: 162 QQAQS--------GGVNARASVAGALMRKSPSLLLPQLGI----LIWAWPDGPKSIVEKG 209

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           + +R +GFP+     + +    +          +S LP+  DG+V + +E    +     
Sbjct: 210 KLLRIMGFPLTAEYSK-SVTSSMDVTRWRQFWFKSPLPFVTDGIVIRQEEEPAGRYWQAT 268

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
                W ++ K+  +Q  T + +I   IGRTG  + V ++ P+ I    +    +     
Sbjct: 269 PGP--WSVAWKYPPQQQVTEVENIHFTIGRTGRSSVVLQVSPIKIDDKWVRRVNV----- 321

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
                         RDI +GD+V +  AG+ IP++ ++I      D+             
Sbjct: 322 ------GTIARWKQRDITLGDQVTIALAGQGIPRLENVIWRATQRDSVV----------- 364

Query: 439 SRVVRDLNPKTGKLVAAHRC--TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
                   P     +    C      AC AQ L RL         +I+ +         +
Sbjct: 365 --------PPDWHQLHQWSCFRPLPQACEAQFLSRLIWLSGPQGLDIKNVSGGLWQPLIQ 416

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
                  +       +L   Q         + G G      +Y    + R      ++ +
Sbjct: 417 Q----GLVNDLVGWLSLTTEQIAG------VPGIGHKRAEKIYQQFQQTRQKPFSDWLQA 466

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG    G    +                  ++  +  +W S+     +G   A+ I  F 
Sbjct: 467 LGFPLKGLNETQ---------------WQILLERSMAEWTSMA---GIGQARAKQIKHFL 508

Query: 617 QNPRNICAVEALLKE 631
            +         L K+
Sbjct: 509 HHHEVQVMSNFLSKQ 523


>gi|188576356|ref|YP_001913285.1| DNA ligase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520808|gb|ACD58753.1| DNA ligase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 590

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
              +  L I  V    A  +A  + S           +               V   +A+
Sbjct: 424 ANLLEDLEIPKVTPIRAAQIATAFGSIDALRNGGPEPLVEA-----------GVPQSVAE 472

Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           ++  +   P N       +  L  +   +    +  +  ++ + +V TGTL  + R  A+
Sbjct: 473 SLATWLLVPANDTLAVKAQKKLSALLAMMPEAGEEKTGPLDGQTVVITGTLAALTRDAAK 532

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + L  L ++ 
Sbjct: 533 QRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGEHG 587



 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 128/421 (30%), Positives = 201/421 (47%), Gaps = 72/421 (17%)

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           ++R  GFPV++ V       G+++YY  +   R  LP+DIDG+VYK+D+ + Q+++G  +
Sbjct: 4   QLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDGVVYKLDDLAGQREMGFVS 63

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           R+PRW ++HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLHN D I
Sbjct: 64  RAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQI 123

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
             L           D+RVGD V+V+RAG+VIP+V  ++ ++RHP  QP+  P+ CP+C S
Sbjct: 124 ARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRHPATQPWQMPTQCPVCGS 172

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG++ ++    S  
Sbjct: 173 EIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDS-- 224

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               ++  AD++ L   Q      I                  +      LE  +  +G+
Sbjct: 225 --GVVQGVADLYLLTVDQLLQLRMISTAESPHAFLREAREHLASGAYAQ-LEATLVGIGV 281

Query: 560 RHVGAE------IARSLAKYYLSYQ------------NFAQEINNIIAHNND-------- 593
              G         A  L     ++             N  + I        +        
Sbjct: 282 DLAGEREVPQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGI 341

Query: 594 ------------------------DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
                                    W    RVP +G  +A+++  F+  P N  A++ LL
Sbjct: 342 EHVGESTAKALSAWFGDLDLIRHLPWPLFKRVPDIGGEVARSLGHFFDQPGNQKAIDHLL 401

Query: 630 K 630
            
Sbjct: 402 A 402


>gi|302186902|ref|ZP_07263575.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. syringae
           642]
          Length = 561

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 110/607 (18%), Positives = 209/607 (34%), Gaps = 94/607 (15%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR E+++L+Q+I+  DD Y++     I D  YD  +++       F        P   
Sbjct: 31  AKARSEVTTLQQQIAAWDDSYHRQGISQIPDELYDQARQKLSLWRSCF----AVSTPES- 85

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
                  +  ++  + H +P   + K+ +   ++ ++      W           ++PK+
Sbjct: 86  -----NPLKTAVGPLHHPVPHTGVNKLADEGSVKDWLKGRNDLW-----------IQPKV 129

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +T+ YEKG+ V    RGDG +G+D ++  R I  IP+ L      I  ++GE+Y  
Sbjct: 130 DGVAVTLVYEKGQLVQVISRGDGRNGQDWTSQARLIKAIPQQLPQAESPI--LQGELYWR 187

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
            +D +               N R+  +G+L                  +G     +  G 
Sbjct: 188 LDDHIQAAS--------GSVNARSKVAGLLA------RQTISPQQADAIGLFVWDWPNGP 233

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            +M Q++  L                  +     +      P         + +      
Sbjct: 234 ADMTQRLAGLQTMGFEDSAAYTHSLENYAQAARWREHWYRNPLPFATDGVIMRQGQRPPA 293

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
              +A +P W+ + K    QA   +  ++ +IGR+G +TPV  L PV +    ++  +  
Sbjct: 294 QRWQASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDRTVSRIS-- 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
                              DIR GD++ V  AG  IP++  ++                 
Sbjct: 352 ---------TGSLQRWQTLDIRPGDQIAVSLAGLTIPRLDGVVSRAAERADMII------ 396

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                                  C      C +Q   RL  F  +    + G+G    + 
Sbjct: 397 -------------PRAADFHELSCWQATPGCESQFRARLAWFSGKKGLALPGIGPGTWNT 443

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++      +    D  TL   +  +      I GF + S   L DS++  R    + +
Sbjct: 444 LIENGQIMGLL----DWMTLNHAELVN------IPGFAERSSAKLLDSLHSARERPFQTW 493

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           + ++G+   G                 A+  +N     +         P +G   A  + 
Sbjct: 494 LKAIGLPPTGD----------------ARLPDNWHELADRSVEQWQAEPGIGPGRAARLR 537

Query: 614 EFYQNPR 620
            F+Q+P+
Sbjct: 538 AFFQDPQ 544


>gi|23011876|ref|ZP_00052108.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 114

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 40/111 (36%), Positives = 71/111 (63%), Gaps = 1/111 (0%)

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
            ++++F+  P N  AV ALL++V+        + ++    K +VFTGTL+K+ R +A+  
Sbjct: 4   DSLIQFFSEPHNDAAVRALLEQVNTEP-LASTHSAAAFAGKTVVFTGTLEKMTRSEAKAT 62

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +LGA VS  +S KTD+++ G   GSKL+ A++ GVK+++E+ +L +L +
Sbjct: 63  AERLGAKVSGSVSAKTDLVVAGPGAGSKLKDAERHGVKVVSEDAWLEMLAE 113


>gi|32396687|gb|AAP49299.1| NAD-dependent DNA ligase [Bacillus circulans]
          Length = 108

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 7/114 (6%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104
           D+EYD   +   A+   +P+       + P  ++GG+   +  KV H IP LSL   ++ 
Sbjct: 1   DAEYDLFMQELIALEEQYPEFK---TKDSPSQRVGGQPLDAFQKVEHRIPMLSLANAFHE 57

Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
            DLR F  R+     ++  + + +  E KIDG  +++RYE G FV  A RGDG 
Sbjct: 58  GDLRDFDRRVR----QEVGDDVAYVCELKIDGLAVSVRYENGYFVQGATRGDGT 107


>gi|330955026|gb|EGH55286.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae Cit 7]
          Length = 561

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 111/617 (17%), Positives = 209/617 (33%), Gaps = 102/617 (16%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PD 64
               S  +AR E+++L+Q+++  DD Y++     I D  YD  +++       F    P+
Sbjct: 25  CPDWSAAKARSEVTNLQQQMAAWDDSYHRQGISPIPDELYDQARQKLSLWRSCFAVSTPE 84

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
               +   GPL               H +    + K+ +   ++ ++      W      
Sbjct: 85  ADPLKTAVGPL--------------PHPVAHTGVNKLADESSVKDWLKGRNDLW------ 124

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                ++PK+DG  +T+ YE G+ V A  RGDG  G+D ++  R I  IP+ L      I
Sbjct: 125 -----IQPKVDGVAVTLVYENGQLVQAISRGDGRKGQDWTSQARLIKAIPQQLPQADSAI 179

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244
             ++GE+Y   +D                 N R+  +G+L                  +G
Sbjct: 180 --LQGELYWRLDD--------HIQSASGSVNARSKVAGLLA------RQTISPQQADAIG 223

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                +  G  +M Q++  L           +      +     +      P        
Sbjct: 224 LFVWDWPNGPGDMAQRLAGLQAMGFEDSAAYSHPLENYAKAARWREHWYRNPLPFATDGV 283

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
            + +         +A +P W+ + K    QA   +  ++ +IGR+G +TPV  L PV + 
Sbjct: 284 IMRQGQRPPAQRWQASAPYWIAAWKHPYAQALAEVCKVNFKIGRSGRITPVLELTPVRLD 343

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
              ++  +                     DIR G ++ V  AG  IP++  +    R  +
Sbjct: 344 DRTVSRIS-----------TGSLQRWQTLDIRPGAQIAVSLAGLTIPRLDGV--VTRAAE 390

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNI 483
                                     +      C      C +Q   RL     +    +
Sbjct: 391 RADIII-----------------PRAEDFHELSCWQATPGCESQFRARLAWLSGKKGLAL 433

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            G+G    +   ++      +    D  TL      +  ++ NI GF + S   L +S+ 
Sbjct: 434 PGVGPGTWNTLIENGQIMGLL----DWMTL------NHAELANIPGFAERSSAKLLNSLQ 483

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             R    + ++ ++G+   G                 A+  +N               P 
Sbjct: 484 TARERPFQTWLKAIGLPPTGG----------------ARLPDNWHELAERSVEQWQAEPG 527

Query: 604 VGDIIAQAIVEFYQNPR 620
           +G   A  +  F+Q+P+
Sbjct: 528 IGPGRAARLRAFFQDPQ 544


>gi|146305490|ref|YP_001185955.1| NAD-dependent DNA ligase LigB [Pseudomonas mendocina ymp]
 gi|172046035|sp|A4XPF7|LIGB_PSEMY RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|145573691|gb|ABP83223.1| DNA ligase (NAD(+)) [Pseudomonas mendocina ymp]
          Length = 562

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 131/631 (20%), Positives = 223/631 (35%), Gaps = 100/631 (15%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF-P 63
           Q  P       +A+ E ++L Q+I+  DD Y+   +  I D  YD  + R       F P
Sbjct: 18  QAEPCPDWPDSRAQVEFAALSQQIAQWDDAYHNQGRSPIADELYDQARERLQRWQQCFAP 77

Query: 64  DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
                 +P          +  S   + H +P   L K+ N   + ++I      W     
Sbjct: 78  ARQPLPEP----------LTGSAGPIAHPVPQTGLRKL-NDAAIGEWIGSRDDLW----- 121

Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183
                 ++PK+DG  +T+ Y +G+   A  RGDG  G+D SA  R +P +P  L   +  
Sbjct: 122 ------IQPKVDGVAVTLVYRQGRLHQAISRGDGRHGQDWSARARQLPAVPTRLPEAL-- 173

Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL 243
            + ++GE+Y    D L   D          A  R   +G++ R   +D            
Sbjct: 174 DLVLQGELYWRLEDHLQARD--------GGAGARGKVAGMMARHELSDTDGAAIGLF--- 222

Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303
                       E L +++ LGF  +    +        +        R  LP+  DG+V
Sbjct: 223 VWDWPDGPASMDERLSQLQALGFADSQHYSKPIRSVEE-ARQWRQHWYRHRLPFASDGVV 281

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
            +            +A +P W ++ K+   QA   +  +D +IGR+G +TPV RL+PV++
Sbjct: 282 LRQGTR--PAGARWQAEAPHWAVAWKYPASQALAVVQAVDFRIGRSGRITPVLRLQPVDL 339

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
               I+   L                    D+R GD+V ++ AG  IP++  +I      
Sbjct: 340 DDRRISRVAL-----------GSVPTWKSLDVRPGDQVAIRLAGLTIPRLDSVIWR---- 384

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFN 482
                          S     +         A  C     +C  Q   RL    S+    
Sbjct: 385 ---------------SPHRAPVEVPRSADYHALSCWRSSPSCQHQFQARLAWLSSKQGLA 429

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542
           + G+G                ++   D   L + Q  S      + G G      L  + 
Sbjct: 430 LSGVGPGTWSSL--------PLQGLLDWLELDKAQLQS------LPGIGPRRAAQLQQAF 475

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
            + R+  L++++ +LG                        +  ++I    DDW   +R P
Sbjct: 476 AQARDRPLQQWLRALGAPPGFDAGG-------------LDDWPSLIERQRDDW---LRRP 519

Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
            VG   A  ++ F+ +P        L +   
Sbjct: 520 GVGPKGADRLLAFFSHPEVQRLGRQLQQAGV 550


>gi|66048020|ref|YP_237861.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. syringae
           B728a]
 gi|81307820|sp|Q4ZLZ9|LIGB_PSEU2 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|63258727|gb|AAY39823.1| DNA ligase (NAD+) [Pseudomonas syringae pv. syringae B728a]
          Length = 561

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 109/607 (17%), Positives = 203/607 (33%), Gaps = 94/607 (15%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
            +AR E+++L+Q+I+  DD Y++     I D  YD  +++ +     F        P   
Sbjct: 31  AKARSEVTALQQQIAEWDDSYHRQGISQIADELYDQARQKLNLWRSCF----AVSTPES- 85

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
                  +  ++  + H +P   + K+ +   ++ ++      W           ++PK+
Sbjct: 86  -----DPLKTAVGPLPHPVPHTGVNKLADEGSVKGWLKGRNDLW-----------IQPKV 129

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +T+ YEKG+ V A  RGDG  G+D ++  R I  I     L   E   ++GE+Y  
Sbjct: 130 DGVAVTLVYEKGRLVQAISRGDGRKGQDWTSQARLIKAIA--QQLPQAESTILQGELYWR 187

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
            +D +               N R+  +G+L                  +G     +  G 
Sbjct: 188 LDDHIQAAS--------GSVNARSKVAGLLA------RQTISPQQADAIGLFVWDWPNGP 233

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
            +M Q++  L                        +      P         + +      
Sbjct: 234 ADMAQRLAGLQAMGFEDSAAYTHPLENYVQAARWREHWYRNPLPFATDGVILRQGQRPPA 293

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
              +A +P W+ + K    QA   +  ++ +IGR+G +TPV  L PV +    ++  +  
Sbjct: 294 QRWQASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDRTVSRIS-- 351

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
                              DIR GD++ V  AG  IP++  ++                 
Sbjct: 352 ---------TGSLQRWQTLDIRPGDQIAVSLAGLTIPRLDGVVSRAAERADMII------ 396

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                                  C      C +Q   RL     +    + G+G    + 
Sbjct: 397 -------------PRADDFHELSCWQATPGCESQFRARLAWLSGKKGLALPGVGPGTWNT 443

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
              +      +    D  TL   +  +      I GF + S   L DS+   R    + +
Sbjct: 444 LIDNGQIMGLL----DWMTLNHAELVN------IPGFAERSSAKLLDSLQTARERPFQTW 493

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           + ++G+   G                 A+  +N               P +G   A  + 
Sbjct: 494 LKAIGLPPTGG----------------ARLPDNWHELAGRSVEQWQAEPGIGPGRAARLR 537

Query: 614 EFYQNPR 620
            F+Q+P+
Sbjct: 538 AFFQDPQ 544


>gi|308188670|ref|YP_003932801.1| DNA ligase [Pantoea vagans C9-1]
 gi|308059180|gb|ADO11352.1| DNA ligase [Pantoea vagans C9-1]
          Length = 583

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 115/624 (18%), Positives = 219/624 (35%), Gaps = 91/624 (14%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +  +A +E+  L+Q++ + DD YY+  +  + D++YDAL++R     H F          
Sbjct: 29  TPNRATEEIRRLQQQLQHWDDAYYRQGQSPVADADYDALQQRLIQWQHCF---------- 78

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P                H +    ++K+ +   L  ++      W           ++P
Sbjct: 79  SPYQPAYAPQLPGNGTSLHPVAHTGVKKMRDKLALAYWMQGRRDLW-----------VQP 127

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +++ Y +G+ V    RGDG  GE+  A    IP IP        + + ++GE++
Sbjct: 128 KVDGIAVSLVYRQGRLVSLLSRGDGLRGEEWLAKAAWIPAIPLN-IETRLDEVVLQGELF 186

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +   D     D           N R   +G +       +   L+ F+           +
Sbjct: 187 LPMTDHQQAID--------GGKNARTQVAGAMMSKQRVPLLNSLDVFIWAWPDGPATMTE 238

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              ++ +    +    ++ V+               +   + LP+  DG+V         
Sbjct: 239 RLEQLSRWGLGIAAKWSHSVK-----DEEEVAAWRDRWFHAALPFVTDGVVVHQSLRPAG 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K       +  W ++ K+   + S  +L +D  +GRTG +  V  L+PV +    +    
Sbjct: 294 KNWLPGEGT--WAVAWKYQPPEVSAEVLSVDFPVGRTGKIAAVLNLQPVQLDDKTVRRVN 351

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           +                    DI  GD + +  AG+ IP++  +I      D        
Sbjct: 352 V-----------GSLRRWQESDIVAGDVITLSLAGQGIPRLERVIWRVAERDYPQ----- 395

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
                         P          C T    C  Q L +L+    +   NI G+ +   
Sbjct: 396 --------------PPDASHYTPLSCYTFSAECQKQLLAKLRWLSQKTVLNIPGVERSTW 441

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
               ++              TL   Q  + T      GF     + L+   N  R     
Sbjct: 442 LRLLETGSMTHL----FGWLTLTPEQIAAAT------GFSPERASQLWHRFNLTRQQPFR 491

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R++ +LGI  +  +  +SL           Q+  +++  +   W +L   P VG  +A+ 
Sbjct: 492 RWVDALGI-SLPRKALKSLPD---------QQWESLMQRDVTGWQAL---PGVGAALAKR 538

Query: 612 IVEFYQNPRNICAVEALLKEVSPS 635
           +V  + + R    +  L ++  PS
Sbjct: 539 LVAQFHDARVQALIAFLQQQGIPS 562


>gi|6561410|gb|AAF16907.1|AF173987_5 DNA ligase [Rhodothermus marinus DSM 4252]
          Length = 154

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
            +EA+  ++A    + L + ++ H   YY    P+I D++YD L +    +   FP+L  
Sbjct: 29  DLEAIDRKEAEALAARLREVLNQHAYRYYVLDNPLIPDADYDLLMQALRKLEARFPELV- 87

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P+ P  ++GG       KV H  P LSL   +  ED+R +  R  R   ++    + 
Sbjct: 88  --TPDSPTQRVGGPPLGRFEKVRHPEPLLSLNNAFGEEDVRVWYERCCRMLAERLGQPVQ 145

Query: 128 --FTLEPKI 134
              T E KI
Sbjct: 146 PAVTAELKI 154


>gi|166711580|ref|ZP_02242787.1| NAD-dependent DNA ligase LigA [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 590

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
              +  L I  V    A  +A  + S           +               V   +A+
Sbjct: 424 ANLLEDLEIPKVTPIRAAQIAAAFGSIDALRNGGPEPLVEA-----------GVPQSVAE 472

Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           ++  +   P N       +  L  +   +    +  +  ++ + +V TGTL  + R  A+
Sbjct: 473 SLATWLLVPANDTLAVNAQKKLSALLAMMPEAGEEKTGPLDGQTVVITGTLAALTRDAAK 532

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + +  LGA V+  +S+KT  ++ G+  GSKL+KAQ LGV+I +E + L  L ++ 
Sbjct: 533 QRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDETRLLAFLGEHG 587



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 122/420 (29%), Positives = 201/420 (47%), Gaps = 70/420 (16%)

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           ++R  GFPV++ V       G+++YY  +   R  LP+DIDG+VYK+D+ + Q+++G  +
Sbjct: 4   QLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDGVVYKLDDLAGQREMGFVS 63

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           R+PRW ++HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLHN D I
Sbjct: 64  RAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQI 123

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
             L           D+RVGD V+V+RAG+VIP+V  ++ ++R P  QP+  P+ CP+C S
Sbjct: 124 ARL-----------DVRVGDTVIVRRAGDVIPEVAAVVADQRPPATQPWQMPTQCPVCGS 172

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG++ ++    S  
Sbjct: 173 EIVREEG------QAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDS-- 224

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI----- 554
               ++  AD++ L   Q      I  +               +          +     
Sbjct: 225 --GVVQGVADLYLLTVDQLLQLRMISTVESPHAFLREAREHLASGAYAQLEATVVGIGVD 282

Query: 555 ----------------------FSLGIRHVGAEIARSLAKYYL----------------- 575
                                 F    + +  + A +L +                    
Sbjct: 283 LAGEREVSQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIE 342

Query: 576 -----SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
                + +  +    ++    +  W    RVP +G  +A+++  F+  P N  A++ LL 
Sbjct: 343 HVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQPGNQKAIDHLLA 402


>gi|261884680|ref|ZP_06008719.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 212

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 26/237 (10%)

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            NI+GLG   ++  ++       I+  ADI+ L             + GF    ++NL  
Sbjct: 1   MNIDGLGDAIVELLYQKN----IIKDIADIYRLDE------LSFIGLEGFKTKKISNLLS 50

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +IN  +  +L++FI SLGI H+G   A+ +A  Y            +             
Sbjct: 51  AINNSKTPNLDKFIASLGIEHIGEVAAKKIANNYGDRWLELTLEELLAL----------- 99

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660
               G+ +A + +EF +   N+  ++ LL+ ++P +   E   +     K +V TGTL +
Sbjct: 100 -DGFGEAMALSYLEFMRV--NLEKIKELLEFITPKMQNLELKTN-IFSGKTVVITGTLSR 155

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
             R + +  +   GA VS+ +S+KTD ++ G+  GSKLEKA +LGV+ ++E ++  L
Sbjct: 156 -SRDEFKAELESYGAKVSSSVSKKTDFVLYGNEAGSKLEKANELGVRAIDESEYESL 211


>gi|269469037|gb|EEZ80601.1| NAD-dependent DNA ligase [uncultured SUP05 cluster bacterium]
          Length = 398

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 103/436 (23%), Positives = 196/436 (44%), Gaps = 55/436 (12%)

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
           + +   + +D+DG+V++V   +L+  +G   +  RW I+ K  + +A  ++L +  Q+GR
Sbjct: 13  ERVLQMVDFDVDGVVFEVTNENLKNYMGANRKFHRWQIAFKENKDKAQVKVLSVTPQVGR 72

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
           TG +TPVA LEP  + GA I  AT H+   +K            + +  G  + + R+G 
Sbjct: 73  TGKITPVAELEPTLLSGATIVRATGHHYGLVK-----------EQGLGAGSVIELTRSGL 121

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
           VIPK+  ++       + P   P  CP C   +  + +           C     C AQ 
Sbjct: 122 VIPKINQVL------KSAPVKIPKLCPSCSEALEWESD--------FLMCVNHDLCPAQV 167

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
           + ++++F    A N +G G   ++  ++       IR  + I+ L     +         
Sbjct: 168 IGKMEYFFKILANN-DGFGIATIEKLYEHG-----IRKISQIYALSASDLSDM------- 214

Query: 529 GFGDVSVTNLYDSINKRRNISL--ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
           GFGD + TNL + + +  N  +   RF+ + G+  +G     +L K Y   + F      
Sbjct: 215 GFGDKTSTNLVNQLKRSTNEQIEDWRFLAAFGVVRMGTGNCENLLKSYPLNEIF------ 268

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN-PRNICAVEALLKEVSP-SIGRHEKNVS 644
                  +   +  +    ++ AQ IV   +        +      +   S+ ++ +  +
Sbjct: 269 -----ELNLEQISAIDGFAELTAQMIVTGLKIIQTEFNLLSRYRFNLEITSLQKNLEEFT 323

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQ 703
             +  KK+VFTG +Q   R K +++   +G  +   +S KTD ++VG+  G  K+E A++
Sbjct: 324 HVLFGKKIVFTGKMQG-SRDKMKKHAKSIGIKILTSVSAKTDYLVVGEKVGQKKIESAKK 382

Query: 704 LGVKIMNEEQFLFLLQ 719
            GVK+++EE +   ++
Sbjct: 383 FGVKVLSEEDYQATIE 398


>gi|330940502|gb|EGH43581.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 561

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 114/614 (18%), Positives = 210/614 (34%), Gaps = 96/614 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S  +AR E+++L+Q+I+  DD Y++     I D  YD  +++       F   A S
Sbjct: 25  CPDWSAAKARSEITALQQQIAAGDDSYHRQGISQIPDELYDQARQKLSLWRSCF---AVS 81

Query: 69  EDPNGPLNK-IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              + PL   +G           H +P   + K+ +   ++ ++      W         
Sbjct: 82  TPESNPLKTAVGPLP--------HPVPHTGVNKLADEGSVKDWLKGRNDLW--------- 124

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
             ++PK+DG  +T+ YE+G+ V A  RGDG  G+D +   R I TIP+ L      +  +
Sbjct: 125 --IQPKVDGVAVTLVYEQGQLVQAISRGDGRKGQDWTLQARLIKTIPQQLPQAESPV--L 180

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247
           +GE+Y   +D +               N R+  +G+L                  +G   
Sbjct: 181 QGELYWRLDDHIQAAS--------GSVNARSKVAGLLA------RQTISPQQADAIGLFV 226

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
             +  G  +M Q++  L                  +     +      P         + 
Sbjct: 227 WDWPNGPADMAQRLAGLQAMGFEDSAAYTHPLQNYAQAARGREHWYRNPLPFATDGVIMR 286

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +         +A +P W+ + K    QA   +  ++ +IGR+G +TPV  L PV +    
Sbjct: 287 QGQRPPAQRWQASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDRT 346

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++  +                     DIR GD++ V  AG  IP++  ++          
Sbjct: 347 VSRIS-----------TGSLQRWQTLDIRPGDQIAVSLAGLTIPRLDGVVSRAAERADMI 395

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGL 486
                                         C      C +Q   RL     +    + G+
Sbjct: 396 I-------------------PRADDFHELSCWQATPGCESQFRARLAWLSGKKGLALPGV 436

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G    +   ++      +    D  TL   +  +      I GF + S   L DS+   R
Sbjct: 437 GPGTWNTLIENGQIMGLL----DWMTLNHAELVN------IPGFAERSSAKLLDSLQTAR 486

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
               + ++ ++G+   G                 A+  +N     +         P +G 
Sbjct: 487 ERPFQTWLKAIGLPPTGG----------------ARLPDNWHELADRSVEQWQAEPGIGP 530

Query: 607 IIAQAIVEFYQNPR 620
             A  +  F+Q+P+
Sbjct: 531 GRAARLRAFFQDPQ 544


>gi|153831457|ref|ZP_01984124.1| DNA ligase [Vibrio cholerae 623-39]
 gi|148873061|gb|EDL71196.1| DNA ligase [Vibrio cholerae 623-39]
          Length = 373

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 149/394 (37%), Positives = 230/394 (58%), Gaps = 29/394 (7%)

Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238
           + P  +EVRGEV++ K  F ALN   +  G K + NPRNAA+G LR+L+      R L F
Sbjct: 7   DFPTRLEVRGEVFMPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAF 66

Query: 239 FVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297
           + + +G       A   Y+   +++  G P+    +   +   + ++Y ++   R +L Y
Sbjct: 67  YAYSVGVIEGGELATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAY 126

Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
           +IDG+V KVD+  LQ++LG  AR+PRW I++KF  ++  T L D++ Q+GRTG +TPVA+
Sbjct: 127 EIDGVVIKVDDIQLQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAK 186

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           LEPV +GG  ++NATLHN D I+ L            + VGD V+++RAG+VIP++V ++
Sbjct: 187 LEPVFVGGVTVSNATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVV 235

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           +  R  +A+   FP+ CP+CQS V R          A  RC+GGL C AQ+ E LKHFVS
Sbjct: 236 LERRPENAKSIVFPTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVS 289

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537
           R A ++EGLG + ++     E     +  PAD+F L+        ++  +   G  S  N
Sbjct: 290 RKAMDVEGLGDKVIEQLVDRE----MVSTPADLFRLRA------GELTILERMGPKSAQN 339

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571
           + D++NK +  +L +F+++LGIR VG   A +LA
Sbjct: 340 VIDALNKAKQTTLPKFLYALGIREVGEATALNLA 373


>gi|330859974|emb|CBX70302.1| DNA ligase B [Yersinia enterocolitica W22703]
          Length = 527

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 102/617 (16%), Positives = 204/617 (33%), Gaps = 93/617 (15%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           LE+++   +  Y+Q     I D  YD L+ +                P+    +      
Sbjct: 4   LEKQLDQWNIAYHQQGISPIADDIYDQLQDKLHRWR------LCLGLPDKTDIR----PI 53

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               K+ H +    L+K+ +   L  ++T     W           ++PKIDG  +T+ Y
Sbjct: 54  PGNGKMLHPVAHTGLKKLKDEAALISWMTGRKDLW-----------VQPKIDGVAVTLVY 102

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
           + GK      RG+G  G++ +     I  IP+ ++   P ++ ++GEV++          
Sbjct: 103 QAGKLTQVLSRGNGLKGQNWADKAPFISAIPQYIASAPP-LLTLQGEVFLQMEGHQQAQS 161

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
                     AN R + +G L R + + +   L  F+       +       E  + ++ 
Sbjct: 162 --------GGANARASVAGALMRKSVSPLLAKLGIFIWAWPDGPKSMV----EKSRLLQE 209

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323
           +GFP+     +              +  +  LP+  DG+V + +     +          
Sbjct: 210 MGFPLTAHYSE-PVISSSDVAQWRDRWFKMPLPFVTDGVVIRQENVPAGRYWQATPG--N 266

Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383
           W ++ K+   Q  T + DI   +GRTG +T + ++ PV I    I    +          
Sbjct: 267 WSVAWKYPPPQQITEIKDIHFTVGRTGKITAILQVVPVKIDDKWIRRVNI---------- 316

Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
                     DI  GD+V +  AG+ IP++  +I                         +
Sbjct: 317 -GSIARWRLWDIVPGDQVTISLAGQGIPRLDKVIWRVSQ-------------------RQ 356

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
           ++ P          C   L    +     +         ++   +   +  ++       
Sbjct: 357 EIVPPDADKFHQLTCFRRLPFECEPQFLSRLAWLSGTNGLDM--QSVGNGLWRELIHHGF 414

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           I    D  +L   Q      I  + G G      +Y    + R     +++ +LG     
Sbjct: 415 INGLLDWLSLSVEQ------IAAVPGIGQGRAEKIYQQFQRARQQPFSQWLQALG----- 463

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
                     +          +++      +W  +   P +G + A+ I  F  +P    
Sbjct: 464 ----------FPQGIPLDSSWHSLRQRGIAEWRLM---PGIGQVRAKQINHFLHHPEVQM 510

Query: 624 AVEALLKEVSPSIGRHE 640
             + L ++        E
Sbjct: 511 MADFLSQQGIAGFSPEE 527


>gi|70733074|ref|YP_262847.1| NAD-dependent DNA ligase LigB [Pseudomonas fluorescens Pf-5]
 gi|123761963|sp|Q4K4I6|LIGB_PSEF5 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|68347373|gb|AAY94979.1| DNA ligase, NAD-dependent, putative [Pseudomonas fluorescens Pf-5]
          Length = 556

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 124/609 (20%), Positives = 226/609 (37%), Gaps = 93/609 (15%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
           A  E+++L+Q++   D  YY+  + ++ D  YD  ++R       FP   R+   + PL 
Sbjct: 28  ATDEITALQQQLQRWDSSYYRDGRSLVADELYDQARQRLLTWRQCFPQAPRAM--DQPLL 85

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
             GG        + H IP   +EK+ +   +  ++      W            +PK+DG
Sbjct: 86  GAGG-------SIRHPIPHTGVEKLADANAVTGWLKGRDDIW-----------AQPKVDG 127

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +T+ Y +G+F  A  RGDG  G D +     I  IP    L  P  + ++GE+Y+   
Sbjct: 128 VAVTLIYHRGQFQQALSRGDGVHGHDWTRAAWQIEAIP--KRLPRPVDLLLQGELYLRLE 185

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
                        R      RN  +G + R   T            +G     + +G   
Sbjct: 186 --------QHVQARSGSLKARNRVAGWMARKQLTAAEAA------QIGLFVWDWPQGPAT 231

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           + +++  L        R+ +   G  +   + ++     P         + +        
Sbjct: 232 LSERLEQLADLGFAEPREYSRPVGGFADAQQWRARWYRSPLPFASDGIILRQSRRPAAER 291

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
            +A++P W+ + K+   Q    +  +D +IGRTG +TP+  +EPV +    I   +L   
Sbjct: 292 WQAKAPYWIAAWKYPYAQVLASVRQVDFRIGRTGRITPLLEIEPVTLDDRQIRRVSL--- 348

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
                            DI  GD+V +  AG  IP++ ++                   +
Sbjct: 349 --------GSLQRWRSLDIVPGDQVAISLAGLSIPRLDEV-------------------V 381

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
            +S + + + P          C      C  Q L RL    S+   N++ +G +      
Sbjct: 382 LRSTLRQSIQPPREADFHFLSCWQPSPGCEEQFLARLTWLSSKQGLNLQNIGSRTWARLV 441

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
           ++      +    D  TL +       ++ NI GFGD S   L +S++  R     R++ 
Sbjct: 442 ETGRIKGLL----DWLTLDQ------AELANIAGFGDRSSKRLLESLHSARQQPFPRWLK 491

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +LGI   G+      A     +Q     + N +   N+          +G   A  +V F
Sbjct: 492 ALGIPPSGS------ADLSGPWQAL--AMKNSLDWQNEA--------GIGAERAAQLVAF 535

Query: 616 YQNPRNICA 624
           ++ P  +  
Sbjct: 536 FRAPEVLAL 544


>gi|288550204|ref|ZP_05969603.2| hypothetical protein ENTCAN_08224 [Enterobacter cancerogenus ATCC
           35316]
 gi|288316113|gb|EFC55051.1| NAD-dependent DNA ligase adenylation domain protein [Enterobacter
           cancerogenus ATCC 35316]
          Length = 548

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 122/618 (19%), Positives = 214/618 (34%), Gaps = 96/618 (15%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           +A KE+++L  +    D+ Y++     + D  YD L  R       F     +     PL
Sbjct: 19  KAEKEIAALSAQKIRWDEAYWKEGTSEVSDEIYDQLTARLAQWQRCF----SNAPAESPL 74

Query: 76  NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135
                        V H I    ++K+ + E LR+++      W           ++PK+D
Sbjct: 75  -----PALKG--TVKHPIAHTGVQKVASKEALRQWMYARRDLW-----------VQPKVD 116

Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195
           G  +T+ Y  G    A  RGDG  GED +A +RA+P +P+           ++GE+++ +
Sbjct: 117 GVAVTLVYRNGTLSQAVSRGDGVKGEDWTAQVRAMPLVPQSTEGA-LANSVLQGELFLLR 175

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
           ++            +    N R   +G + R     + + +  F+       +   +   
Sbjct: 176 DN--------HIQQQMGGMNARAKVAGAMMRHADASLLKQIGVFIWAWPDGPKAMQQHLT 227

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           ++ Q    L       V+ A+      +++       S LP+  DG+V +    +     
Sbjct: 228 QLSQSGFDLTARYTLPVQSADEVEKQRAHWF-----TSPLPFVTDGVVVRSA--AEPAGD 280

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
                   W+I+ K+        + DI   +GRTG ++ VA L PV +    +   +L +
Sbjct: 281 RWLPGEGNWVIAWKYTPVSQVADVRDIQFAVGRTGKISVVALLAPVQLDDKRVQRVSLGS 340

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
            D                DI  GD +L+  AG+ IP+                       
Sbjct: 341 VD-----------RWQRLDIAPGDHILISLAGQGIPRFE--------------------K 369

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
           +    V R           +  C      C  Q   RL    S    +++GLG+      
Sbjct: 370 VIWRGVERQKPRPPASQFHSLTCFYASPECMDQFFSRLTWLSSTQGLDVKGLGEAGWRAL 429

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
           ++    A           L + Q  ST       GF       L+   N  R     R+I
Sbjct: 430 YQ----AHHFEHIFSWLRLNQAQIQST------PGFSAARGVALWHRFNLIREQPFIRWI 479

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEIN-NIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
            ++GI    A                    + +  A  +        +P  G   A  IV
Sbjct: 480 TAMGIPVTKAT--------------LNAAGDTSWQAMRSRRAEEWQHLPGTGKEKALQIV 525

Query: 614 EFYQNPRNICAVEALLKE 631
           E+  +P+ + A+ A L E
Sbjct: 526 EWLHHPQ-VEALAAWLAE 542


>gi|156936180|ref|YP_001440096.1| NAD-dependent DNA ligase LigB [Cronobacter sakazakii ATCC BAA-894]
 gi|166226363|sp|A7MQB5|LIGB_ENTS8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|156534434|gb|ABU79260.1| hypothetical protein ESA_04079 [Cronobacter sakazakii ATCC BAA-894]
          Length = 561

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 114/627 (18%), Positives = 225/627 (35%), Gaps = 96/627 (15%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
                + +QA++E+++LE +++  D+ Y+ + +  + D+ YD++++R  A    F  L  
Sbjct: 20  ACPDWTPQQAQQEVAALENQLTRWDEAYWLHGENKVSDAVYDSMRQRLRAWQTCF-ALPV 78

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
             D           + L+  +  H +    ++K+ +   L +++                
Sbjct: 79  FND---------APVALAAGRTRHPVAHTGVQKLNDATSLSQWM-----------HGKTD 118

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
             ++PK+DG  +++ Y KGK      RGDG  GED +A  R IP IP  ++        +
Sbjct: 119 LWVQPKVDGVAVSLVYRKGKLQQVISRGDGERGEDWTARARHIPAIPLQVTGE-LADSVL 177

Query: 188 RGEVYISKNDF-LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246
           +GE+++ +       +  + A G+   A  R+  S +L  L+                  
Sbjct: 178 QGELFLRQTGHRQQQDGGINARGQVAGAMMRSTVSSVLNDLDL-------------FIWA 224

Query: 247 SEIFAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                K     L  +   GFP      +  ++   +     +       LP+  DG+V +
Sbjct: 225 WPDGPKAMEARLSTLAEGGFPLAQAWSKPVHSVSDVARLREQW--FSEPLPFVTDGVVIR 282

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
                  K       S  W+++ K+   +  T +  +   +GRTG ++ VA+LEPV +  
Sbjct: 283 EGREPPGKSWRPGEGS--WVVAWKYPPAKQITEIKALRFAVGRTGKISVVAQLEPVTLDD 340

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++  ++                    D+  GD+V +  AG+ IP++            
Sbjct: 341 KKVSKVSI-----------GSLARWEKLDLAEGDQVEISLAGQGIPRLD----------- 378

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIE 484
                     +      R              C      C  Q + RL     +  F++ 
Sbjct: 379 ---------AVIWRPTQRIKPVPPTARFDTLSCLYGTTGCEEQFISRLVWLSGKHVFDLA 429

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
           G+G+       +                L      S   ++   GF       L+   N 
Sbjct: 430 GMGEATWRQLSEH----------HHFEHLFSWLALSVDALKQTPGFSAQRAAQLWHQFNL 479

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            R    +R++ +LG+  + A   ++L            +   + A +   W +L   P V
Sbjct: 480 TRQQPFQRWVKALGL-PLPARDWQALTD---------DKWQQLQARDERSWQTL---PGV 526

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKE 631
           G   A+ +V +  +P      E L  +
Sbjct: 527 GAERARQLVSYIHHPDIAALAEWLAAQ 553


>gi|302844550|ref|XP_002953815.1| hypothetical protein VOLCADRAFT_118457 [Volvox carteri f.
           nagariensis]
 gi|300260923|gb|EFJ45139.1| hypothetical protein VOLCADRAFT_118457 [Volvox carteri f.
           nagariensis]
          Length = 1842

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 136/546 (24%), Positives = 209/546 (38%), Gaps = 136/546 (24%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           ++L  LE  +S+H+D YY   +  I D+ YD LK +   +A     L            +
Sbjct: 89  QQLRQLESALSHHNDLYYNQQRTEISDAAYDTLKLQYRQLAAQ---LRGELPLEELELPV 145

Query: 79  GGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-------------- 122
           G     +  L KV H +  LSL  + + E+   ++ +     Q                 
Sbjct: 146 GAPPPASGGLRKVPHRVAMLSLAAVNSREEAETWLDKTLAKLQADAGGGGGNDAGGGGGA 205

Query: 123 --------------------------------------DNSIFFTLEPKIDGTMITIRY- 143
                                                   S  + +EPK+DG  + + Y 
Sbjct: 206 GMVRGGGGGGGGGGQKGVQKKKATKKSKTGADVPASSVGRSYRWVMEPKVDGLAVRVLYG 265

Query: 144 --EKG--KFVYAALRGDGHSG------------------EDVSACIRAIPTIPRVLSLNI 181
               G      AA RGDG  G                   D         +     + + 
Sbjct: 266 RTAHGTYILKEAATRGDGWLGRGSHIAASISPSPAGAANHDGDGNEWENGSAASAPAADC 325

Query: 182 --PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL-NF 238
             PE +E RGEV+    D   +N E  AVG+ P+AN RNAASG +R L+P +  R   +F
Sbjct: 326 GAPEWVEARGEVFCRTADLELVNREQEAVGQPPFANTRNAASGAVRLLDPAECRRRRLSF 385

Query: 239 FVH-------------------------------------------GLGKTSEIFAKGQY 255
             +                                           G     +     Q+
Sbjct: 386 VAYAALAPSPPPSPSQQRRPEPATTTPPPSSSSPPPYPSSPSNRSSGNAAAVQPLHPSQW 445

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           + LQ ++  GF V+   R  ++   ++    E    R+TL YD DG V K+D+ +L   L
Sbjct: 446 DTLQWLKSAGFSVSPDNRLCDSREEVLGAVEEWMEKRATLGYDADGAVIKLDDTTLYDIL 505

Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375
           G     PRW ++ KF  ++A TR+  +++ +GR G +TPVA L PV +GG  I  A+LHN
Sbjct: 506 GTAGSDPRWAVAWKFPGEEAVTRVTGVELTVGRQGQITPVALLSPVVVGGVTIRRASLHN 565

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
               + L               GD V+V+R+G+VIP+VV ++   R P A+ +  PS CP
Sbjct: 566 LGLARALGLHL----------PGDAVVVRRSGDVIPQVVRVLPELRPPGAELWQPPSACP 615

Query: 436 ICQSRV 441
            C   +
Sbjct: 616 ACGGPL 621



 Score = 57.5 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 8/107 (7%)

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
           + GFG      L  S+   R++S    +  L I  VG   A +L + + S +  A E+  
Sbjct: 786 LPGFGPARTAALMSSLESSRHMSPGTLLRGLNIPRVGEVAAEALGRAFPSLELLAAEVPY 845

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
                            V   +A+ +  ++Q P N   +  L +   
Sbjct: 846 ADRIAAAA--------GVAPSVARNVANWFQQPANQRLLARLREAGV 884



 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 647  IENKKLVFTGTL-----QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEK 700
            +E  ++  TGTL     + + R++ +  +   GA     + + T +++ G   G  K  K
Sbjct: 977  LEGMRVCVTGTLMGPYGKGLVRNEMRRMLEAAGAEFHLTVKKDTQVLLAGTGAGERKTRK 1036

Query: 701  A 701
            A
Sbjct: 1037 A 1037


>gi|37524304|ref|NP_927648.1| NAD-dependent DNA ligase LigB [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81420505|sp|Q7N9N4|LIGB_PHOLL RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|36783727|emb|CAE12581.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 580

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 110/609 (18%), Positives = 215/609 (35%), Gaps = 87/609 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S ++ ++E +SL Q++++ D  Y Q     I D  YD L                 
Sbjct: 31  CPEWSQDKLQRETNSLMQQMAHWDQLYRQKGISEIDDEVYDQLMSELT-----HWQFCLK 85

Query: 69  EDPNGPLNKIGGEMNLSL--FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
           + P+                 K+ H +    L K+ + +++ +++              +
Sbjct: 86  QAPHS------DFPVEVFPDNKLVHPVAHTGLSKLKDKQEINRWL-----------HGRL 128

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
              L+PKIDG  +T+ Y+ GK V    RG+G  G + +A  R IP IP+ +    P++  
Sbjct: 129 PVWLQPKIDGVAVTLVYQNGKLVSLISRGNGAEGVNWTAKSRYIPDIPQNIENAPPDL-V 187

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246
           ++GE+++ K +                   RN  +G++ R + +   + +  F+      
Sbjct: 188 LQGELFLHKEE--------HRQQLLGSDGARNRVAGLMMRKDHSSELKQIGLFIWSWPDG 239

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                      L+K+  +GFP+             V     M      + +  DG+V K 
Sbjct: 240 PAEM----ESKLRKLADMGFPLALRYSHKIEEPEQVQK-LRMHYFEQPMLFATDGIVLKQ 294

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
           +     K    R+ S  W ++ K   +   T++ +++  IGRTG ++ V  L+ V +   
Sbjct: 295 EI--EPKGNQWRSGSNSWAVAWKHPLRHQVTQVREVNFTIGRTGKISVVLGLDKVKLDDR 352

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            I+   +                    D+  GDRV +  AG  IPK+  ++   +     
Sbjct: 353 QISRVNI-----------GSVRRWRQLDVLPGDRVTLTLAGHGIPKLAQVVWRIKE---- 397

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
                           +D+ P   +   A  C   L    +Q    +     +   + G+
Sbjct: 398 ---------------RQDIQPPDKQHYHALSCLT-LTVGCEQQFNARLKWLGENLQMTGV 441

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
                    + +           +  L      S  +I  + G GD     +Y   +K +
Sbjct: 442 SSGSWAMLTERKL----------VTDLTGWLALSAQQIAALPGIGDKRAQAIYSQFSKAK 491

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-VG 605
           N     ++  +G+ ++       L+     +Q   Q++             L ++   V 
Sbjct: 492 NQPFSYWMKGIGVPYM-----DKLSDNVYHWQQLEQKLAAAQLKQQLTVGQLKKLSDFVS 546

Query: 606 DIIAQAIVE 614
           D   +AI E
Sbjct: 547 DAQIKAIAE 555


>gi|291562521|emb|CBL41337.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [butyrate-producing bacterium SS3/4]
          Length = 169

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 18/186 (9%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++   K +  L   +S     YYQ S+ I+ + EYD L      +         +     
Sbjct: 1   MDDKIKRMKELIPILSEAAKAYYQESREIMSNFEYDRLYDELLKLEQE----TGTVFAGS 56

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P  K+G E+   L K  H  P LSL K  ++++LR+++                  L  K
Sbjct: 57  PTQKVGYEVLSELPKERHERPMLSLNKTKSVDELREWL------------GGQTGLLSWK 104

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  + + YE G    A  RG+G  GE +++  R    IP   ++     + +RGE  I
Sbjct: 105 MDGLTVVLTYEDGVLAKAVTRGNGEIGEVITSNARTFINIP--TTIPYKGQLILRGEAVI 162

Query: 194 SKNDFL 199
           S +DF 
Sbjct: 163 SYSDFE 168


>gi|291335083|gb|ADD94712.1| NAD dependent DNA ligase [uncultured phage MedDCM-OCT-S09-C23]
          Length = 717

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 136/752 (18%), Positives = 245/752 (32%), Gaps = 124/752 (16%)

Query: 24  LEQEISYHDDCYYQYSKPII----LDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79
           L + ++  D  YYQ   P I     D+ YD +    +     F          G    +G
Sbjct: 25  LREVLACFDRLYYQ---PTIDEGIPDAIYDQVV---EIYDSKFGKKKTYHQKKG----VG 74

Query: 80  GE--MNLSLFK-VTHSIPTLSLEKIWN------IEDLRKF------ITRIYRFWQKKDDN 124
            +   +    K V       ++ K ++       + L K+        + +  W+KK   
Sbjct: 75  AKGVASTDTRKDVKLPYYMGTVNK-FSAMMVDADKGLSKWRSKPVNYEKKFNAWKKKY-P 132

Query: 125 SIFFTLEPKIDGTMITIRYE--KGKFVY-AALRGDGHSGEDVSACIRAIPTIPR------ 175
              +T+E K DG    + YE   G        RG G +G+D+S  I+ +           
Sbjct: 133 KGPYTIEGKADGISCLLIYEKKNGTIKRTIYSRGTGKTGKDLSRYIQNLRDGFNLIPSGE 192

Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL-NPTDITR 234
                    I +RGE+ +    +     +        ++NPRN   G + +  N    TR
Sbjct: 193 DFDFPPENKIVIRGELVMRYRVWKRKYSD-------DFSNPRNIVGGFVTKKTNSGVSTR 245

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            + F  +            Q + L++M      V+   + +      +      KS R  
Sbjct: 246 DIEFVSYEKLVPRNETRFDQIKTLKRMGFATVEVSQLTKNSELTEKNLFKIL--KSFRKK 303

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
            PY+IDGLV   D+   +    E   S     ++K   + A   ++ ++     T  L P
Sbjct: 304 SPYEIDGLVVFADDKVRKVSDKEVLDS---AFAYKVNAQTAIAEVVGVEWSSSTTNALKP 360

Query: 355 VARLEPVNIG---------GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKR 405
           V   +PV IG         GAL   AT  N ++IK              I  G ++L+ R
Sbjct: 361 VVVYKPVTIGRVMEDGSIVGALYRRATAFNANFIKK-----------NKIGPGAKLLIVR 409

Query: 406 AGEVIPKVVDIIVNERH--PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463
           +G+VIP +  I+   +   P+    + P +       +  +      +          + 
Sbjct: 410 SGDVIPHIEQILKQGKPDLPNKARAAQPKYNYKGHPEINFEWGDGKNRRSKLDIFAVEML 469

Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK 523
             A+  +    F          +         +     F       I             
Sbjct: 470 DDAKIQQMDLFFSGGRQKRGMNIKGIAKKTLRQLFQEGF--DSITSILQASEEDLAEALG 527

Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583
              +      ++   + +      I     +F     HV  + A  +   Y         
Sbjct: 528 KPGVAANIKKAIDERFSTPVDLSQIMGASQVF----PHVRTKTATKIIAKYP-------- 575

Query: 584 INNIIAHNNDDWLSLIRVPLVGDII----AQA---IVEFYQNPRNICAVEALLKEVSPSI 636
              I+  N  +   +  V  VG       A A      F ++   I              
Sbjct: 576 --KIMKMNAKELKKIKDVSGVGQETLDGFAAAMPGFKLFLRDNPQIKIASK--------- 624

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV------ 690
              +K  S++++ K  VFTGT+ K++R  AQ  V  +G      L +  D +++      
Sbjct: 625 SVTKKPTSNKLQGKIFVFTGTMDKMRREDAQNLVEDMGGKAPGTLKKNVDFLVIGDKGGA 684

Query: 691 ----GDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
                      L +A++    I++E  FL ++
Sbjct: 685 GKKK-------LAQAEKFDTPIISETDFLTMI 709


>gi|206576543|ref|YP_002235985.1| NAD(+)-dependent DNA ligase LigB [Klebsiella pneumoniae 342]
 gi|257096557|sp|B5XTF0|LIGB_KLEP3 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|206565601|gb|ACI07377.1| NAD(+)-dependent DNA ligase LigB [Klebsiella pneumoniae 342]
          Length = 558

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 109/611 (17%), Positives = 204/611 (33%), Gaps = 90/611 (14%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+E+S L Q+I    + Y++     + D  YD L  R       FP     ED + P   
Sbjct: 30  RQEISRLHQQIVAWKEDYWRQGASEVSDEVYDQLTLRLAQWRQCFPG-TTPEDDDLP--- 85

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
                        H +    + K+ +   +  ++            N     ++PK+DG 
Sbjct: 86  ---PPTGD---ARHPVAHTGVRKLADEVSVAHWMK-----------NKTDLWIQPKVDGV 128

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+ Y +G  V A  RGDG  GE  +A  R IP + +V +        ++GE+++ ++ 
Sbjct: 129 AVTLVYRQGSLVQAISRGDGLRGEAWTARARQIPALAKVTTGE-LANSVLQGELFLRRDG 187

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
                       +    N R   +G++ R +       L+ F+           + Q  +
Sbjct: 188 --------HVQQQAGGMNARAKVAGLMMRADAAAALSQLDVFIWAWPDGPSDMRRRQQLL 239

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
            Q          + V +          +       S LP+  DG++ +            
Sbjct: 240 TQAGFKYSGQYTHPVTRVEQVAQWRQRWYR-----SPLPFVSDGVIVREGR--EPPGRAW 292

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
                 W+ + K+        +  I    GR+G L  VA+LEP  +    +    +    
Sbjct: 293 SPGKGEWLAAWKYPPASQVMEVRAIHFSTGRSGRLNVVAQLEPQRLDDKRVQRVNV---- 348

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
                           DI VGD++ +  AG+ IP++  ++                    
Sbjct: 349 -------GSVARWQALDIGVGDQLQISLAGQGIPRIDAVVWR------------------ 383

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            +       P   K  A         CS Q L RL    S+ A +++G+G+      +++
Sbjct: 384 -TAERHKPTPPAAKFNALTCYFATPECSEQFLSRLIWLSSKSALDVDGVGEH----LWRA 438

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +        L   Q  +      + G       +L+   +  R     R++ ++
Sbjct: 439 IQQQNPMTHIFSWLALTVEQLQA------VPGISAARGQHLWHQFDLVRKRPFIRWVLAM 492

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           G+      +A+              E  N              +P VG+I A+ +V F  
Sbjct: 493 GLPVPQGALAQL-------------ESENWHLLAAKSEAQWRALPGVGEIRARQLVAFLH 539

Query: 618 NPRNICAVEAL 628
           +P  +   + L
Sbjct: 540 HPDVVALAQWL 550


>gi|217032017|ref|ZP_03437518.1| hypothetical protein HPB128_187g44 [Helicobacter pylori B128]
 gi|216946327|gb|EEC24933.1| hypothetical protein HPB128_187g44 [Helicobacter pylori B128]
          Length = 157

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 93/171 (54%), Gaps = 19/171 (11%)

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            I +LGI H+G   +++LA+Y L+    ++                + +   G  +A+++
Sbjct: 1   MINALGIEHIGKGASKTLARYGLNVLEKSEA-------------EFLEMEGFGVEMARSL 47

Query: 613 VEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           V FY +  N   + +L + ++P    +   ++  SS   NK +V TGTL K  R +  + 
Sbjct: 48  VNFYAS--NQEFIRSLFELLNPRNSDMAEEKQKSSSVFNNKTIVLTGTLSK-PRQEYAQM 104

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  LGA +S+ +S KTD +I G+NPGSKL  A++ GV ++NEE+ L  L++
Sbjct: 105 LENLGAKISSSVSAKTDFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKE 155


>gi|253987704|ref|YP_003039060.1| NAD-dependent DNA ligase LigB [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779154|emb|CAQ82314.1| similar to putative dna ligase-like protein yicf of escherichia
           coli [Photorhabdus asymbiotica]
          Length = 578

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 116/643 (18%), Positives = 216/643 (33%), Gaps = 97/643 (15%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
              A S ++ ++E  SL Q+++  D  Y Q     I D  YD L             L  
Sbjct: 28  DCPAWSQDKLQRETKSLMQQMARWDQLYRQKGISEIDDEVYDQLMADLI-----HWQLCL 82

Query: 68  SEDPNGPLNKIGGEMNLSLF--KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125
            ++P+                 K+ H +    L K+ +  ++ +++              
Sbjct: 83  KQEPHS------DFPATVFPDNKLVHPVAHTGLSKLKDEREINRWL-----------HGR 125

Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185
           +   L+PKIDG  +T+ Y++GK V    RG+G  G D +A    I  IP+ +    P  +
Sbjct: 126 LPVWLQPKIDGVAVTLVYQQGKLVSLISRGNGSEGVDWTAKSPYISEIPQEIENAPPY-M 184

Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245
            ++GE+++ KN                    RN  +G++ R   +   + +  F+     
Sbjct: 185 VLQGELFLHKNG--------HIQQSSGSDGARNRVAGLMMRKEHSPELKQVGVFIWSWPD 236

Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
                       LQK+  +GFP+             V     M      +P+  DG+V K
Sbjct: 237 G----PVDMDGKLQKLANMGFPLALRYSHKIERPEQVQK-LRMHYFEQPMPFATDGIVLK 291

Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365
            +     K    R+ S  W ++ K   +   T++ ++   IGRTG ++ V  L+ V +  
Sbjct: 292 QEI--EPKGNQWRSGSNSWAVAWKHPLRHQVTQVREVSFTIGRTGKISVVLGLDKVKLDD 349

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425
             ++   +                    D+  GDRV +  AG  IPK+  ++   +    
Sbjct: 350 RQVSRVNI-----------GSVRRWQQLDVLPGDRVTLTLAGHGIPKLAQVVWRIKE--- 395

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                            +D+ P   +   A  C    A   QQ      ++     ++ G
Sbjct: 396 ----------------RQDIQPPDKQRYHALSCLTLTAGCEQQFNARLKWLGE-HLHMTG 438

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
           +         + +           +  L      S   I  + G GD     +Y   +K 
Sbjct: 439 VSSGSWAMLTEQKL----------VTDLTSWLTLSVQDIAALPGIGDKRAQAIYSQFSKA 488

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +N     ++  +G+ ++       L+     +Q   Q++             L +     
Sbjct: 489 KNQPFSYWMKGIGVPYM-----DKLSNDVDHWQQLEQKLAEAQLKQQLTSGQLKK----- 538

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
                 + EF  + R     E L        GR      + + 
Sbjct: 539 ------LSEFVNDTRIKAIAEKLSVSGIKGFGRENGAGPNPVS 575


>gi|195940543|ref|ZP_03085925.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
           EC4024]
          Length = 98

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI 114
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRV 98


>gi|283787721|ref|YP_003367586.1| DNA ligase [Citrobacter rodentium ICC168]
 gi|282951175|emb|CBG90867.1| putative DNA ligase [Citrobacter rodentium ICC168]
          Length = 560

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 121/623 (19%), Positives = 210/623 (33%), Gaps = 103/623 (16%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----- 62
                S  +A++E+S L Q+I+  DD Y++  K  I D  YD L+ R       F     
Sbjct: 20  ACPNWSSARAQEEISRLRQQIARWDDDYWKKGKSAIEDGVYDQLRTRLGDWQRCFGGDAT 79

Query: 63  PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122
           P L  +         IGG        V H +    ++K+ +   L++++      W    
Sbjct: 80  PALLPA---------IGGT-------VAHPVAHTGVKKLTDKRALQQWMAGRDDLW---- 119

Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182
                  ++PK+DG  +T+ Y  G+   A  RGDG  GED +A ++ I  +P+ ++    
Sbjct: 120 -------VQPKVDGVAVTLVYRNGRLTRAISRGDGLKGEDWTAKVQQIAAVPQTVTGG-L 171

Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHG 242
               ++GE++  ++             +    N R   +G+L R   T        F+  
Sbjct: 172 ANSVLQGEIFWPQD--------RHIQQKMGGKNARAKVAGLLMRRETTSEIASQGIFIWA 223

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
                +  A+   ++ Q    L       V+ A       S++       S LP+  DG+
Sbjct: 224 WPDGPQSMAEKVTQLSQAGFTLTERFTLAVKNAQEVERARSHWW-----SSGLPFVTDGV 278

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V +                  W+ + K+        +  I   +G++G +  VA L PV 
Sbjct: 279 VVRTG--KEPGARYWLPGQGNWLAAWKYPSVAQVAEVTAIRFMVGKSGKIAAVATLMPVM 336

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +    +    L                    DI  GD++L+  AG+ IP++         
Sbjct: 337 LDDKRVQRVNL-----------GSVRRWQEWDIAPGDQILISLAGQGIPRID-------- 377

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAF 481
                        +    V R           A  C      C  Q + RL    SR   
Sbjct: 378 ------------KVVWRGVDRTKPVPPKDRFNALTCFYATDACQEQFISRLAWVGSRGVL 425

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IEG G+       +    A           L   Q           GF       L+  
Sbjct: 426 DIEGTGEAGWRALHQHHHFA----HIFSWLGLTLEQIQ------LTPGFTKARGEKLWHQ 475

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
            N  R    +R++ ++GI          L +  L+          + A +   W  L   
Sbjct: 476 FNLARKKPFKRWLLAMGIP---------LTQAALNISG-DSSWPQLAAQSEKHWRQL--- 522

Query: 602 PLVGDIIAQAIVEFYQNPRNICA 624
           P  G   A +++E+ +    +  
Sbjct: 523 PGTGAGRAASVIEWIRCAEIVAL 545


>gi|307128799|ref|YP_003880815.1| DNA ligase [Dickeya dadantii 3937]
 gi|306526328|gb|ADM96258.1| DNA ligase [Dickeya dadantii 3937]
          Length = 561

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 118/630 (18%), Positives = 228/630 (36%), Gaps = 91/630 (14%)

Query: 5   QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
           +     A S  +A +E++ L Q+++  D+ YY+  +  + D  YD L++        F  
Sbjct: 20  EAASCPAWSSTRAEQEITQLGQQLTQWDNAYYEQGQSPVDDQVYDQLRQTLATWQVCFQA 79

Query: 65  LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124
            A     + P             +  H +    L+K+    +L+++I +    W      
Sbjct: 80  DAGRFAISLPTT----------GRRQHPVAHTGLKKLSEPTELKQWIAQHNDLW------ 123

Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184
                ++PKIDG  +T+ YE+GK V A  RG+G  GED +  +R + ++P+ L   +   
Sbjct: 124 -----VQPKIDGVAVTLVYEQGKLVAAISRGNGRQGEDWTDKVRQMNSVPQQL-SAMSGR 177

Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244
              +GE+Y+   D            +    N R   +G +RR  P+ +   +  FV    
Sbjct: 178 QVFQGELYLQVTD--------HRQQQVGGINARAQVAGEMRRKQPSPLLSRIGVFVWAWP 229

Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304
                        L K+R LGF +     Q  +     + + E +  R+ LP+  DG+V 
Sbjct: 230 DGPADMP----ARLAKLRELGFGLTADYTQPVSSLEAAAQWRE-RWYRAPLPFVTDGVVV 284

Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364
           +  +         +     W ++ K+      T +  +D+++GRTG +T V +L+PV + 
Sbjct: 285 RQAQ--EPAGRYWQDTPAEWAVAWKYPLVNRVTEVTGVDVEVGRTGRMTVVLQLQPVILD 342

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
              ++   L                    D+  GDRV +  AG  IP++  ++   R   
Sbjct: 343 DKTVSRVNL-----------GSVSRWRQWDVLPGDRVSISLAGLGIPRLDAVVW--RGAV 389

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNI 483
            +  + P+  P                      C      C  Q L RL     R+  ++
Sbjct: 390 REAITVPATSPFD-----------------VFSCLQWSRECQPQFLARLVWMSGRNGLSL 432

Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543
            G+ +       +       +        L+  Q  +           +     ++    
Sbjct: 433 SGISEATWQRLTQRGALVDVVS----WLALEPAQLAAAGDFG------EQQAERIHRQFQ 482

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             R   L  ++ +LG+  V + +  +L             +  +   +  +W        
Sbjct: 483 LARRQPLRNWLLALGL-PVPSRVRHALD---------GASLEQLQQRSAAEWQQFS---G 529

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS 633
           +G   AQ I +F  +   +  +  L +   
Sbjct: 530 IGVRRAQRIRDFLHHTDIVRQLAWLNEHGV 559


>gi|288932991|ref|YP_003437050.1| DNA ligase (NAD(+)) [Klebsiella variicola At-22]
 gi|288887720|gb|ADC56038.1| DNA ligase (NAD(+)) [Klebsiella variicola At-22]
          Length = 558

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 109/611 (17%), Positives = 204/611 (33%), Gaps = 90/611 (14%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+E+S L Q+I    + Y++     + D  YD L  R       FP  A  ED + P   
Sbjct: 30  RQEISRLHQQIVAWKEDYWRQGASEVSDEVYDQLTLRLTQWRQCFPG-ATPEDDDLP--- 85

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
                        H +    + K+ +   +  ++            N     ++PK+DG 
Sbjct: 86  ---PPTGD---ARHPVAHTGVRKLADEVSVAHWMK-----------NKTDLWIQPKVDGV 128

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+ Y +G  V A  RGDG  GE  +A  R IP + +V +        ++GE+++ ++ 
Sbjct: 129 AVTLVYRQGSLVQAISRGDGLRGEAWTARARQIPALAKVTTGE-LANSVLQGELFLRRDG 187

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
                       +    N R   +G++ R +       L+ F+           + Q  +
Sbjct: 188 --------HVQQQAGGMNARAKVAGLMMRADAAAALSQLDVFIWAWPDGPSDMRRRQQLL 239

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
            Q          + V +          +       S LP+  DG++ +            
Sbjct: 240 TQAGFKYSGQYTHPVTRVEQVAQWRQRWYR-----SPLPFVSDGVIVREGR--EPPGRAW 292

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
                 W+ + K+        +  I    GR+G L  VA+LEP  +    +    +    
Sbjct: 293 SPGKGEWLAAWKYPPASQVMEVRAIHFSTGRSGRLNVVAQLEPQRLDDKRVQRVNV---- 348

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
                           DI VGD++ +  AG+ IP++  ++                    
Sbjct: 349 -------GSVARWQALDIGVGDQLQISLAGQGIPRIDAVVWR------------------ 383

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
            +       P   K  A         CS Q L RL    S+ A +++G+G+      +++
Sbjct: 384 -TAERHKPTPPAAKFNALTCYFATPECSEQFLSRLIWLSSKSALDVDGVGEN----LWRA 438

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +        L   Q  +      + G       +L+   +  R     R++ ++
Sbjct: 439 IQQQNPMTHIFSWLALTVEQLQA------VPGISAARGQHLWHQFDLVRKRPFIRWVLAM 492

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           G+      + +              E  N              +P VG+I A+ +V F  
Sbjct: 493 GLPVPQGALTQL-------------ESENWHLLAAKSEAQWRALPGVGEIRARQLVAFLH 539

Query: 618 NPRNICAVEAL 628
           +P  +   + L
Sbjct: 540 HPDVVALAQWL 550


>gi|238789535|ref|ZP_04633319.1| DNA ligase B [Yersinia frederiksenii ATCC 33641]
 gi|238722288|gb|EEQ13944.1| DNA ligase B [Yersinia frederiksenii ATCC 33641]
          Length = 565

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 108/634 (17%), Positives = 213/634 (33%), Gaps = 97/634 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               +  +   E++ L+Q++S  D  Y+Q    ++ D+ YD L+ +              
Sbjct: 27  CPEWTESRISNEINLLDQQLSKWDIAYHQQGVSLLDDNVYDQLQDKLRGWREC------R 80

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P+   N+    +     K  H +    L+K+ N   L  +++     W          
Sbjct: 81  GLPDKTNNR----LIPGNGKRLHPVAHTGLKKLKNEMALTNWMSGRKNLW---------- 126

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y+ GK      RG+G  G+        I  IP+      P ++ ++
Sbjct: 127 -VQPKVDGVAVTLVYQAGKLTQLLSRGNGLKGQSWIDKAPFISAIPQY-IAMAPPLLTLQ 184

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++                     N R + +G L R + + +   L  F+        
Sbjct: 185 GELFLQMEGHQQAQS--------GGVNARTSVAGALMRKSASPLLAKLGIFIWAWPDG-- 234

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
              +   E    ++ +GFP+     + +               R+ LP+  DG+V + +E
Sbjct: 235 --PRNMVERTTLLQIMGFPLAAQYSK-SVTSSKDVIQWREHWYRAPLPFVTDGVVIRQEE 291

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +     +    W ++ K+   Q  T + DI   +GRTG +T V ++ PV I    I
Sbjct: 292 EPAGRYWRSASG--NWSVAWKYPPIQQLTEIQDIHFTVGRTGKITVVLQVSPVKIDDKWI 349

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    +I  GD+V +  AG+ IP++  ++           
Sbjct: 350 RRVNI-----------GSMARWRQWNITSGDQVTIALAGQGIPRLDKVVWRV-------- 390

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRC--TGGLACSAQQLERLKHFVSRDAFNIEGL 486
                          + NP          C     L C  Q + RL      +  +++ +
Sbjct: 391 -----------DQRHEFNPPMADRFHQLSCFRLPPLECEQQLIARLTWLSGPNGLDMQSI 439

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G +    F++       I       +L   Q      I  + G G V    ++      R
Sbjct: 440 GSK----FWQEIVHHGLINNMVGWLSLTAEQ------IAAVPGVGPVRAEKIHQQFQLTR 489

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
                +++ +LG         +  +    S   +                    +P +G 
Sbjct: 490 KKPFSQWLPALGFPQGMPVGTQWHSLQQRSIAEWRL------------------IPGIGL 531

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
           + A+ +  F  +P      + L ++        E
Sbjct: 532 VRAKQMSNFLHHPEVQAQADFLSQQGIAGFRPEE 565


>gi|57168175|ref|ZP_00367314.1| DNA ligase (NAD) Cj0586 [Campylobacter coli RM2228]
 gi|57020549|gb|EAL57218.1| DNA ligase (NAD) Cj0586 [Campylobacter coli RM2228]
          Length = 141

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 15/156 (9%)

Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             A+ LA  +                +     +   +   G+ +A ++ EF  +  N   
Sbjct: 1   MAAKKLALSFG------------KEWHKQSLEAYANLEGFGEQMALSLCEF--SRVNSAR 46

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
           ++   K ++    + +    S I  K  V TG L +  R + +  +  LG  VS  +S+K
Sbjct: 47  IDEFYKLLNLKEQKVQIQEDSVIFGKTFVITGALSR-PRDEFKNLIESLGGKVSGSVSKK 105

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           TD ++ G   GSKL+KAQ+LGVK ++E +F  L+++
Sbjct: 106 TDYVLFGQEAGSKLDKAQELGVKCIDENEFNELIEK 141


>gi|170767052|ref|ZP_02901505.1| NAD(+)-dependent DNA ligase LigB [Escherichia albertii TW07627]
 gi|170124490|gb|EDS93421.1| NAD(+)-dependent DNA ligase LigB [Escherichia albertii TW07627]
          Length = 561

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 107/625 (17%), Positives = 203/625 (32%), Gaps = 93/625 (14%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
              A S  +A  E+S L+Q+I   DD Y++  +  I DS YD L  R       F +   
Sbjct: 21  ACPAWSPAKAHDEISRLQQQIKQWDDDYWKEGQSTIEDSIYDQLSARLAQWQRCFGEETN 80

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
            +                   V H +    + K+ +   + +++                
Sbjct: 81  RDAI--------APPLHG--TVMHPVAHTGVRKLTDKNAVSQWMR-----------GRGD 119

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
             ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I ++P  +S        +
Sbjct: 120 LWVQPKVDGVAVTLVYHDGKLSQAISRGNGLKGEDWTQKVRQISSVPHSVSGP-LANSTL 178

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247
           +GE+++ +              +    N R+  +G++ R +       L  F+       
Sbjct: 179 QGEIFLQRES--------HIQQQMGGMNARSKVAGLMMRQDNAGTLNSLGVFIWAWPDGP 230

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
           +      + +      L       V+ A+      + + + K      P+  DG+V +  
Sbjct: 231 QSMTDRLHLLATAGFALTQRYTRAVKNADEVECARNEWWKAKL-----PFVTDGVVVRGA 285

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +               W+ + K+        +  I   +G++G ++ VA L PV +    
Sbjct: 286 KEPESSHW--LPGQADWLAAWKYQPVAQVAGVNAIQFAVGKSGKISVVASLAPVMLDDKR 343

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    +                    DI  GD++L+  AG+ IP++              
Sbjct: 344 VQRVNI-----------GSVRRWQEWDIAPGDQILISLAGQGIPRID------------- 379

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGL 486
                   +      R           +  C      C  Q + RL    S+    +EG+
Sbjct: 380 -------DVVWRGAERTKPVPPENRFNSLTCYFASDVCREQFISRLVWLGSKQVLGLEGI 432

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+       ++               L      +  ++ N  G        L+   N  R
Sbjct: 433 GEAGWRTLHQT----------HRFEHLFSWLSLTPDQLHNTPGIAKSKSEQLWHQFNLAR 482

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
                R++ ++GI       A   A    S++   Q            W  L   P  G 
Sbjct: 483 KQPFTRWVMAMGI---PLTQAALNASDERSWEQLLQRTEQY-------WQQL---PGTGA 529

Query: 607 IIAQAIVEFYQNPRNICAVEALLKE 631
             A  ++E+ ++   I  +   L  
Sbjct: 530 RRASKVMEW-KDNAQIKMLGNWLAA 553


>gi|109287930|ref|YP_654624.1| hypothetical protein MIV052L [Invertebrate iridescent virus 3]
 gi|123878657|sp|Q197A8|VF205_IIV3 RecName: Full=Putative DNA ligase 052L
 gi|106073553|gb|ABF82082.1| hypothetical protein MIV052L [Aedes taeniorhynchus iridescent
           virus]
          Length = 756

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 106/790 (13%), Positives = 228/790 (28%), Gaps = 144/790 (18%)

Query: 19  KELSSLEQEISYHDDCYYQY-SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN- 76
           ++ + L +     D  YY     PI+ D EYD L    D +           +P+G +  
Sbjct: 7   EKYNQLLKLKEKADKAYYNGVGDPIMSDEEYDNLVDYMDEL-----------NPDGGVKT 55

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K+G   + S   V   +P  SL+KI    +   ++                  ++ K+DG
Sbjct: 56  KVGASPSRS-KSVKLPMPMNSLDKIKTQHEFDNWMKNWK--------PKAMLLVKEKLDG 106

Query: 137 TMITIRY--EKGKF--VYAALRGDGHSGEDVSACIRA----------------------- 169
                 +  E+ K   +    RGDG +G +++  +                         
Sbjct: 107 VSCLAVFTLEQNKPPKIELFTRGDGTTGTNITRLLNHGLKVGNDYCFDDMVNEDKWTTDW 166

Query: 170 ----IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILR 225
                            + + +RGE+ +++ +F                N RN  SG + 
Sbjct: 167 GCYLNAEAIDHWKKLPVKKVYIRGELIVTRKNFQTWYSNRFM-------NARNLVSGQVN 219

Query: 226 RLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG-FPVNNGVRQANTFHGIVS 283
           + +P     + ++F  + L    +             R +G  PV       +      S
Sbjct: 220 KKSPDPKILQDIDFVPYDLVIDLKRPTMTHEVEHLLFRMIGATPVYTRFLFLSDTISTES 279

Query: 284 YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDID 343
             + ++  +    Y+IDGLV +VD            R+P+  ++ K     A T +  ++
Sbjct: 280 MADYLERRKEKSDYEIDGLVIQVD--DDTLFAPPDNRNPKDTVAFKIMGTTARTTVTHVE 337

Query: 344 IQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLV 403
             + +     P   + PV++ G  I+  T  +  YI               I  G  VL+
Sbjct: 338 WNLSKGSKYKPTIHITPVSLSGVTISKVTGFHGKYI-----------SENKIGKGAVVLI 386

Query: 404 KRAG----EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN-PKTGKLVAAHRC 458
            R+G     ++  +      +    +             +   R++   K      +  C
Sbjct: 387 TRSGEVIPHIVSVISPAAKQDVLLPSNGVWKGVDIYYDGAEEPREITVKKMVHFFTSLGC 446

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
            G    +  +L    +         +      ++ F                        
Sbjct: 447 LGLKTMTVGRLYDAGYRTVEAIVGADTKKLVLINGFRMVAQKLLPSMWVNVAKATPHELM 506

Query: 519 TSTTKIENILGFGDVSVTNLYD---------SINKRRNISLERFIFSLGIRHVGAEIARS 569
            +       +G   +   +            +           +   L   +  + +A+S
Sbjct: 507 AALNAFGEGIGLRKIQNIDCSKPEALEVIGMTKKTVETRIWPIWNDVLARVNALSRMAKS 566

Query: 570 LAKY---------------YLSYQN-----------FAQEINNIIAHNNDDWLSLIRVPL 603
             +                + SY             +     +  A  +       +   
Sbjct: 567 QLRKQETGSCEPEEDDDYNFGSYHPCHMPCQSSNKIWECRSRSPSAAGSASPCRPTKRRD 626

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
                     +++ +  + CA E         +          ++    VFT    + + 
Sbjct: 627 ----------DWFDSSESSCATE-------TCVVESPPKKRPPMQGYVFVFT----RFRD 665

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDN-------PGSKLEKAQQLGVKIMNEEQFLF 716
              +  +T LG  V   +++    +I  +         G KL+ A    + + +      
Sbjct: 666 KDLERQITALGGKVLNNVNQNVTHVITKEKGPYKKPYTG-KLKFALDNNLFVWSLVHLKS 724

Query: 717 LLQQYNTTLR 726
           ++      L+
Sbjct: 725 IVADEQEKLK 734


>gi|330995011|ref|ZP_08318931.1| DNA ligase [Gluconacetobacter sp. SXCC-1]
 gi|329757924|gb|EGG74448.1| DNA ligase [Gluconacetobacter sp. SXCC-1]
          Length = 239

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 77/212 (36%), Positives = 111/212 (52%), Gaps = 3/212 (1%)

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIFFTLEPKIDG 136
           G        +  H +P LSL+ +++ E+   FI+RI RF    ++    + F  EPKIDG
Sbjct: 2   GAPATGPFRRHRHMVPMLSLDNVFSREEFEGFISRIARFLGLDEEQARQLSFVAEPKIDG 61

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             I++ YE G+FV    RGDG  GEDV+A +R +  IP  L    P++IE+RGEV++SK 
Sbjct: 62  LSISLTYEHGRFVRGTTRGDGTEGEDVTANLRTLRDIPDQLPAPCPDVIEIRGEVFLSKQ 121

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQY 255
            FL LN      G +P+ANPRNAA+G LR+L+      R L+ F +  G  S   A   +
Sbjct: 122 AFLELNAAQERAGDRPFANPRNAAAGSLRQLDAGITARRPLSLFAYAAGYCSAPLAATHH 181

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE 287
             L ++   GF VN    Q        ++   
Sbjct: 182 GYLAQLAAWGFRVNPLSTQVKDAGAAEAFMER 213


>gi|257096605|sp|A9R666|LIGB_YERPG RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 567

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 103/624 (16%), Positives = 198/624 (31%), Gaps = 93/624 (14%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              E+++LEQ+++     Y+Q     + D  YD L+ +                P+    
Sbjct: 37  IAVEINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSC------RGLPD---- 86

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K   +      +  H +    L+K+ +   L +++      W           ++PK+DG
Sbjct: 87  KTESQPIPGKGQFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDG 135

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +T+ Y  GK V    RG+G  G++ +     I  IP+ ++   P ++ ++GE+++  +
Sbjct: 136 VAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIANA-PALLTLQGELFLLMD 194

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
                       G    +    A            +  ++  +  G     E  A  Q  
Sbjct: 195 GHQQAKS----GGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDGPTTMKEKVALLQVM 250

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
                     PV + +                   ++ LP+  DG+V + +E    +   
Sbjct: 251 GFPFTAKYSEPVMSHLDVVQ---------WRQFWFQAPLPFVTDGVVVRQEEEPAGRYWQ 301

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
                  W ++ K+   Q    + DI   +GRTG  T V  + P+ I    I    +   
Sbjct: 302 ATPGQ--WSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWIRRVNI--- 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
                            DI  GD + +  AG  IP++ +++              +    
Sbjct: 357 --------GSVTRWKQWDIAPGDHITLALAGHGIPRLDNVV--------WRVHQRNTITA 400

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
                   L+                 C  Q L RL         +I G+G         
Sbjct: 401 PNWDKFHQLS---------CFQRLPHGCEPQFLSRLIWLSGPGGLDIGGIGGGFWQELIH 451

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     I        L   Q  S      I G G+     +Y    + +     R++ +
Sbjct: 452 HE----LINDLVGWLLLTPEQIAS------IPGIGNARAEKIYQQFQRAKQQPFSRWLLA 501

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG   V +  A+                  ++  +  +W ++     +G + A+ I  F+
Sbjct: 502 LGFPQVVSVDAQ---------------WQVVLRRSLSEWATMA---GIGQMRAKQIKHFW 543

Query: 617 QNPRNICAVEALLKEVSPSIGRHE 640
            +P      + L  +        E
Sbjct: 544 DHPDVQALADFLSTQKVVGFELTE 567


>gi|162420613|ref|YP_001604687.1| NAD-dependent DNA ligase LigB [Yersinia pestis Angola]
 gi|162353428|gb|ABX87376.1| DNA ligase, NAD-dependent [Yersinia pestis Angola]
          Length = 558

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 103/624 (16%), Positives = 198/624 (31%), Gaps = 93/624 (14%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              E+++LEQ+++     Y+Q     + D  YD L+ +                P+    
Sbjct: 28  IAVEINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSC------RGLPD---- 77

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K   +      +  H +    L+K+ +   L +++      W           ++PK+DG
Sbjct: 78  KTESQPIPGKGQFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDG 126

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +T+ Y  GK V    RG+G  G++ +     I  IP+ ++   P ++ ++GE+++  +
Sbjct: 127 VAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIANA-PALLTLQGELFLLMD 185

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
                       G    +    A            +  ++  +  G     E  A  Q  
Sbjct: 186 GHQQAKS----GGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDGPTTMKEKVALLQVM 241

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
                     PV + +                   ++ LP+  DG+V + +E    +   
Sbjct: 242 GFPFTAKYSEPVMSHLDVVQ---------WRQFWFQAPLPFVTDGVVVRQEEEPAGRYWQ 292

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
                  W ++ K+   Q    + DI   +GRTG  T V  + P+ I    I    +   
Sbjct: 293 ATPGQ--WSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWIRRVNI--- 347

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
                            DI  GD + +  AG  IP++ +++              +    
Sbjct: 348 --------GSVTRWKQWDIAPGDHITLALAGHGIPRLDNVV--------WRVHQRNTITA 391

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
                   L+                 C  Q L RL         +I G+G         
Sbjct: 392 PNWDKFHQLS---------CFQRLPHGCEPQFLSRLIWLSGPGGLDIGGIGGGFWQELIH 442

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     I        L   Q  S      I G G+     +Y    + +     R++ +
Sbjct: 443 HE----LINDLVGWLLLTPEQIAS------IPGIGNARAEKIYQQFQRAKQQPFSRWLLA 492

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG   V +  A+                  ++  +  +W ++     +G + A+ I  F+
Sbjct: 493 LGFPQVVSVDAQ---------------WQVVLRRSLSEWATMA---GIGQMRAKQIKHFW 534

Query: 617 QNPRNICAVEALLKEVSPSIGRHE 640
            +P      + L  +        E
Sbjct: 535 DHPDVQALADFLSTQKVVGFELTE 558


>gi|165926076|ref|ZP_02221908.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936320|ref|ZP_02224889.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011507|ref|ZP_02232405.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|165915934|gb|EDR34542.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921936|gb|EDR39113.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989653|gb|EDR41954.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|262360227|gb|ACY56948.1| DNA ligase, NAD-dependent [Yersinia pestis D106004]
 gi|262364173|gb|ACY60730.1| DNA ligase, NAD-dependent [Yersinia pestis D182038]
          Length = 558

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 103/624 (16%), Positives = 197/624 (31%), Gaps = 93/624 (14%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              E+++LEQ+++     Y+Q     + D  YD L+ +                P+    
Sbjct: 28  IAVEINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSC------RGLPD---- 77

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K   +      +  H +    L+K+ +   L +++      W           ++PK+DG
Sbjct: 78  KTESQPIPGKGQFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDG 126

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +T+ Y  GK V    RG+G  G++ +     I  IP+ ++   P ++ ++GE+++  +
Sbjct: 127 VAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIANA-PALLTLQGELFLLMD 185

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
                       G    +    A            +  ++  +  G     E  A  Q  
Sbjct: 186 GHQQAKS----GGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDGPTTMKEKVALLQVM 241

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
                     PV + +                   ++ LP+  DG+V + +E    +   
Sbjct: 242 GFPFTAKYSEPVMSHLDVVQ---------WRQFWFQAPLPFVTDGVVVRQEEEPAGRYWQ 292

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
                  W ++ K+   Q    + DI   +GRTG  T V  + P+ I    I    +   
Sbjct: 293 ATPGQ--WSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWIRRVNI--- 347

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
                            DI  GD + +  AG  IP++ +++              +    
Sbjct: 348 --------GSVTRWKQWDIAPGDHITLALAGHGIPRLDNVV--------WRVHQRNTITA 391

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
                   L+                 C  Q L RL         +I G+G         
Sbjct: 392 PNWDKFHQLS---------CFQRLPHGCEPQFLSRLIWLSGPGGLDIGGIGGGFWQELIH 442

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     I        L   Q  S      I G G+     +Y    + +     R++ +
Sbjct: 443 HE----LINDLVGWLLLTPEQIAS------IPGIGNARAEKIYQQFQRAKQQPFSRWLLA 492

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG   V +  A+                  ++  +  +W ++     +G + A+ I  F 
Sbjct: 493 LGFPQVVSVDAQ---------------WQVVLRRSLSEWATMA---GIGQMRAKQIKHFL 534

Query: 617 QNPRNICAVEALLKEVSPSIGRHE 640
            +P      + L  +        E
Sbjct: 535 DHPDVQALADFLSTQKVVGFELTE 558


>gi|153948758|ref|YP_001399043.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis IP
           31758]
 gi|166990677|sp|A7FCR5|LIGB_YERP3 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|152960253|gb|ABS47714.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis IP 31758]
          Length = 567

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 103/624 (16%), Positives = 197/624 (31%), Gaps = 93/624 (14%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              E+++LEQ+++     Y+Q     + D  YD L+ +                P+    
Sbjct: 37  IAVEINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSC------RGLPD---- 86

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K   +      +  H +    L+K+ +   L +++      W           ++PK+DG
Sbjct: 87  KTESQPIPGKGQFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDG 135

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +T+ Y  GK V    RG+G  G++ +     I  IP+ ++   P ++ ++GE+++  +
Sbjct: 136 VAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIANA-PALLTLQGELFLLMD 194

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
                       G    +    A            +  ++  +  G     E  A  Q  
Sbjct: 195 GHQQAKS----GGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDGPTTMKEKVALLQVM 250

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
                     PV + +                   ++ LP+  DG+V + +E    +   
Sbjct: 251 GFPFTAKYSEPVMSHLDVVQ---------WRQFWFQAPLPFVTDGVVVRQEEEPAGRYWQ 301

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
                  W ++ K+   Q    + DI   +GRTG  T V  + P+ I    I    +   
Sbjct: 302 ATPGQ--WSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWIRRVNI--- 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
                            DI  GD + +  AG  IP++ +++              +    
Sbjct: 357 --------GSVTRWKQWDIAPGDHITLALAGHGIPRLDNVV--------WRVHQRNTITA 400

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
                   L+                 C  Q L RL         +I G+G         
Sbjct: 401 PNWDKFHQLS---------CFQRLPHGCEPQFLSRLIWLSGPGGLDIGGIGGGFWQELIH 451

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     I        L   Q  S      I G G+     +Y    + +     R++ +
Sbjct: 452 HE----LINDLVGWLLLTPEQIAS------IPGIGNARAEKIYQQFQRAKQQPFSRWLLA 501

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG   V +  A+                  ++  +  +W ++     +G + A+ I  F 
Sbjct: 502 LGFPQVVSVDAQ---------------WQVVLRRSLSEWATMA---GIGQMRAKQIKHFL 543

Query: 617 QNPRNICAVEALLKEVSPSIGRHE 640
            +P      + L  +        E
Sbjct: 544 DHPDVQALADFLSTQKVVGFELTE 567


>gi|51594396|ref|YP_068587.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis IP
           32953]
 gi|186893383|ref|YP_001870495.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis PB1/+]
 gi|81640832|sp|Q66GE4|LIGB_YERPS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|226737628|sp|B2JYM4|LIGB_YERPB RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|51587678|emb|CAH19278.1| putative DNA ligase [Yersinia pseudotuberculosis IP 32953]
 gi|186696409|gb|ACC87038.1| NAD-dependent DNA ligase adenylation [Yersinia pseudotuberculosis
           PB1/+]
          Length = 567

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 103/624 (16%), Positives = 197/624 (31%), Gaps = 93/624 (14%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              E+++LEQ+++     Y+Q     + D  YD L+ +                P+    
Sbjct: 37  IAVEINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSC------RGLPD---- 86

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K   +      +  H +    L+K+ +   L +++      W           ++PK+DG
Sbjct: 87  KTESQPIPGKGQFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDG 135

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +T+ Y  GK V    RG+G  G++ +     I  IP+ ++   P ++ ++GE+++  +
Sbjct: 136 VAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIANA-PALLTLQGELFLLMD 194

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
                       G    +    A            +  ++  +  G     E  A  Q  
Sbjct: 195 GHQQAKS----GGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDGPTTMKEKVALLQVM 250

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
                     PV + +                   ++ LP+  DG+V + +E    +   
Sbjct: 251 GFPFTAKYSEPVMSHLDVVQ---------WRQFWFQAPLPFVTDGVVVRQEEEPAGRYWQ 301

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
                  W ++ K+   Q    + DI   +GRTG  T V  + P+ I    I    +   
Sbjct: 302 ATPGQ--WSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWIRRVNI--- 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
                            DI  GD + +  AG  IP++ +++              +    
Sbjct: 357 --------GSVTRWKQWDIAPGDHITLALAGHGIPRLDNVV--------WRVHQRNTITA 400

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
                   L+                 C  Q L RL         +I G+G         
Sbjct: 401 PNWDKFHQLS---------CFQRLPHGCEPQFLSRLIWLSGPGGLDIGGIGGGFWQKLIH 451

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     I        L   Q  S      I G G+     +Y    + +     R++ +
Sbjct: 452 HE----LINDLVGWLLLTPEQIAS------IPGIGNARAEKIYQQFQRAKQQPFSRWLLA 501

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG   V +  A+                  ++  +  +W ++     +G + A+ I  F 
Sbjct: 502 LGFPQVVSVDAQ---------------WQVVLRRSLSEWATMA---GIGQMRAKQIKHFL 543

Query: 617 QNPRNICAVEALLKEVSPSIGRHE 640
            +P      + L  +        E
Sbjct: 544 DHPDVQALADFLSTQKVVGFELTE 567


>gi|22124020|ref|NP_667443.1| NAD-dependent DNA ligase LigB [Yersinia pestis KIM 10]
 gi|45439907|ref|NP_991446.1| NAD-dependent DNA ligase LigB [Yersinia pestis biovar Microtus str.
           91001]
 gi|108813969|ref|YP_649736.1| NAD-dependent DNA ligase LigB [Yersinia pestis Nepal516]
 gi|145601104|ref|YP_001165180.1| NAD-dependent DNA ligase LigB [Yersinia pestis Pestoides F]
 gi|150260895|ref|ZP_01917623.1| putative DNA ligase [Yersinia pestis CA88-4125]
 gi|166213764|ref|ZP_02239799.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167419052|ref|ZP_02310805.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167426671|ref|ZP_02318424.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167468217|ref|ZP_02332921.1| NAD-dependent DNA ligase LigB [Yersinia pestis FV-1]
 gi|170026382|ref|YP_001722887.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis YPIII]
 gi|218927262|ref|YP_002345137.1| NAD-dependent DNA ligase LigB [Yersinia pestis CO92]
 gi|229836152|ref|ZP_04456320.1| putative DNA ligase [Yersinia pestis Pestoides A]
 gi|229839890|ref|ZP_04460049.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229841972|ref|ZP_04462127.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904499|ref|ZP_04519610.1| putative DNA ligase [Yersinia pestis Nepal516]
 gi|270488499|ref|ZP_06205573.1| NAD-dependent DNA ligase OB-fold domain protein [Yersinia pestis
           KIM D27]
 gi|294502148|ref|YP_003566210.1| DNA ligase [Yersinia pestis Z176003]
 gi|123073072|sp|Q1CCZ4|LIGB_YERPN RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|123777855|sp|Q7CLB2|LIGB_YERPE RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|166226366|sp|A4TSE5|LIGB_YERPP RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|226737629|sp|B1JQZ3|LIGB_YERPY RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|21956763|gb|AAM83694.1|AE013610_6 putative enzyme [Yersinia pestis KIM 10]
 gi|45434762|gb|AAS60323.1| putative DNA ligase [Yersinia pestis biovar Microtus str. 91001]
 gi|108777617|gb|ABG20136.1| DNA ligase [Yersinia pestis Nepal516]
 gi|115345873|emb|CAL18731.1| putative DNA ligase [Yersinia pestis CO92]
 gi|145212800|gb|ABP42207.1| DNA ligase [Yersinia pestis Pestoides F]
 gi|149290303|gb|EDM40380.1| putative DNA ligase [Yersinia pestis CA88-4125]
 gi|166205166|gb|EDR49646.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166963046|gb|EDR59067.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167054360|gb|EDR64177.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169752916|gb|ACA70434.1| DNA ligase (NAD(+)) [Yersinia pseudotuberculosis YPIII]
 gi|229678617|gb|EEO74722.1| putative DNA ligase [Yersinia pestis Nepal516]
 gi|229690282|gb|EEO82336.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696256|gb|EEO86303.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706600|gb|EEO92606.1| putative DNA ligase [Yersinia pestis Pestoides A]
 gi|270337003|gb|EFA47780.1| NAD-dependent DNA ligase OB-fold domain protein [Yersinia pestis
           KIM D27]
 gi|294352607|gb|ADE62948.1| DNA ligase [Yersinia pestis Z176003]
 gi|320013395|gb|ADV96966.1| putative DNA ligase [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 567

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 103/624 (16%), Positives = 197/624 (31%), Gaps = 93/624 (14%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              E+++LEQ+++     Y+Q     + D  YD L+ +                P+    
Sbjct: 37  IAVEINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSC------RGLPD---- 86

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K   +      +  H +    L+K+ +   L +++      W           ++PK+DG
Sbjct: 87  KTESQPIPGKGQFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDG 135

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +T+ Y  GK V    RG+G  G++ +     I  IP+ ++   P ++ ++GE+++  +
Sbjct: 136 VAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIANA-PALLTLQGELFLLMD 194

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
                       G    +    A            +  ++  +  G     E  A  Q  
Sbjct: 195 GHQQAKS----GGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDGPTTMKEKVALLQVM 250

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
                     PV + +                   ++ LP+  DG+V + +E    +   
Sbjct: 251 GFPFTAKYSEPVMSHLDVVQ---------WRQFWFQAPLPFVTDGVVVRQEEEPAGRYWQ 301

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
                  W ++ K+   Q    + DI   +GRTG  T V  + P+ I    I    +   
Sbjct: 302 ATPGQ--WSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWIRRVNI--- 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
                            DI  GD + +  AG  IP++ +++              +    
Sbjct: 357 --------GSVTRWKQWDIAPGDHITLALAGHGIPRLDNVV--------WRVHQRNTITA 400

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
                   L+                 C  Q L RL         +I G+G         
Sbjct: 401 PNWDKFHQLS---------CFQRLPHGCEPQFLSRLIWLSGPGGLDIGGIGGGFWQELIH 451

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     I        L   Q  S      I G G+     +Y    + +     R++ +
Sbjct: 452 HE----LINDLVGWLLLTPEQIAS------IPGIGNARAEKIYQQFQRAKQQPFSRWLLA 501

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG   V +  A+                  ++  +  +W ++     +G + A+ I  F 
Sbjct: 502 LGFPQVVSVDAQ---------------WQVVLRRSLSEWATMA---GIGQMRAKQIKHFL 543

Query: 617 QNPRNICAVEALLKEVSPSIGRHE 640
            +P      + L  +        E
Sbjct: 544 DHPDVQALADFLSTQKVVGFELTE 567


>gi|290511785|ref|ZP_06551153.1| DNA ligase (NAD+) [Klebsiella sp. 1_1_55]
 gi|289775575|gb|EFD83575.1| DNA ligase (NAD+) [Klebsiella sp. 1_1_55]
          Length = 559

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 109/612 (17%), Positives = 205/612 (33%), Gaps = 91/612 (14%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+E+S L Q+I    + Y++     + D  YD L  R       FP  A  ED + P   
Sbjct: 30  RQEISRLHQQIVAWKEDYWRQGASEVSDEVYDQLTLRLAQWRQCFPG-ATPEDDDLP--- 85

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
                        H +    + K+ +   +  ++            N     ++PK+DG 
Sbjct: 86  ---PPTGDT---RHPVAHTGVRKLADEASVAHWMK-----------NKADLWVQPKVDGV 128

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+ Y +G  V A  RGDG  GE  +A  R IP + ++ +        ++GE+++ +  
Sbjct: 129 AVTLVYRQGSLVQAISRGDGLRGEAWTARARQIPALAKLTTGE-LANSVLQGELFLRREG 187

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256
                       +    N R   +G++ R +        L+ F+           + Q  
Sbjct: 188 --------HIQQQAGGMNARAKVAGLMMRADAAAAPLSQLDVFIWAWPDGPSDMRRRQQL 239

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
           + Q          + V +          +       S LP+  DG++ +       +   
Sbjct: 240 LAQAGFGYSGQYTHSVTRVEQVAQWRQRWYR-----SPLPFVSDGVIVREGHEPPGRVWS 294

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
                  W+ + K+        +  I    GR+G L  VA+LEP  +    +    +   
Sbjct: 295 PGKGE--WLAAWKYPPASQVMEVRAIHFSTGRSGRLNVVAQLEPQRLDDKRVQRVNV--- 349

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
                            DI VGD++ +  AG+ IP++  ++                   
Sbjct: 350 --------GSVARWQALDIGVGDQLQISLAGQGIPRIDAVVWR----------------- 384

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
             +       P   K  A         CS Q L RL    S+ A +++G+G+      ++
Sbjct: 385 --TAERHKPTPPAAKFNALTCYFATPECSEQFLSRLIWLSSKSALDVDGVGEH----LWR 438

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
           +      +        L   Q  +      + G       +L+   +  R     R++ +
Sbjct: 439 AIQQQNPMTHIFSWLALTVEQLQA------VPGISAARGQHLWHQFDLVRKRPFIRWVLA 492

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           +G+      +A+              E  N              +P VG+I A+ +V F 
Sbjct: 493 MGLPVPQGALAQL-------------ESENWHLLAAKSEAQWRALPGVGEIRARQLVAFL 539

Query: 617 QNPRNICAVEAL 628
            +P  +   + L
Sbjct: 540 HHPDVVALAQWL 551


>gi|126669208|ref|ZP_01740125.1| hypothetical protein MELB17_00020 [Marinobacter sp. ELB17]
 gi|126626327|gb|EAZ97005.1| hypothetical protein MELB17_00020 [Marinobacter sp. ELB17]
          Length = 490

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 112/553 (20%), Positives = 196/553 (35%), Gaps = 90/553 (16%)

Query: 22  SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81
             +E+ +   +D Y      II DS+YDAL             L            +  E
Sbjct: 19  RQIEESLERANDAYRNTDDSIISDSDYDALIDELARRDPGHALLTE----------VESE 68

Query: 82  MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-DNSIFFTLEPKIDGTMIT 140
            +    KV H IP LS EK+    +L  ++ R+    Q       +  ++  K+DG    
Sbjct: 69  ADFGAGKVRHQIPMLSTEKVKTDSELSAWVRRVESAAQNIGIRTPVLLSVTAKLDGMAGR 128

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           +  + G     A RGDG +G +++  +  +                  GE+ + ++ F  
Sbjct: 129 L--KDGVL---ASRGDGLTGNNITHILPKLVV-----------HGVGDGELVMIQSYFDE 172

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
                     + + +PRN  +G +    P                 +             
Sbjct: 173 HLS-------EEFKHPRNVVTGAVGADTPRPA--------------AMKALNDHSIHFVS 211

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
              L    +           I       + +    PY  DGLV  V+   L+K+LG    
Sbjct: 212 FTTLTRIDSRTDTIVAQLPEI------REYLLGNTPYPTDGLVLAVESPELRKELGSTGH 265

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
              WM++ K   + A+T ++ +  QIG+TG LTPV +L+ V + GA+I N T HN   ++
Sbjct: 266 HHNWMVAAKTVGETATTAVVGVQWQIGKTGRLTPVIQLKKVTLSGAVIANVTGHNAGKVE 325

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
            +            I VG    + R+GE+IP +V                P+ CP C   
Sbjct: 326 EM-----------GIDVGAMATITRSGEIIPFLVSATPAPNGAS-----LPTHCPACTEH 369

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           + R  +                 C  ++  RL HF      +I+  G    D    +   
Sbjct: 370 LKRRGD---------FLVCINNECEGRRHARLHHFF-NIIGSIDLFGPVACDKLIAAG-- 417

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
              +R   ++F +   +  +        G G  +         K R +   R + ++GI 
Sbjct: 418 ---VRSIQEVFAITAAEFEAMGF-----GPGQSANLVAELEAAKTRPVDDFRVLAAMGIS 469

Query: 561 HVGAEIARSLAKY 573
           ++G   ++ L ++
Sbjct: 470 NLGRGDSKKLLRH 482


>gi|317050124|ref|YP_004117772.1| DNA ligase (NAD(+)) [Pantoea sp. At-9b]
 gi|316951741|gb|ADU71216.1| DNA ligase (NAD(+)) [Pantoea sp. At-9b]
          Length = 589

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 110/627 (17%), Positives = 204/627 (32%), Gaps = 99/627 (15%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF-PD---LARS 68
           S  +A +E++ L  ++ + DD YY+     + D++YD+L +R     H F PD    A  
Sbjct: 26  SPIRAGQEIAQLTTQLRHWDDAYYRQGLNPVSDADYDSLSQRLQQWQHCFTPDQSAYAAQ 85

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              +G  +              H +    + K+ +   + +++                 
Sbjct: 86  PTTDGSTH--------------HPVAHTGVRKLRDKRAVMEWMQ-----------GKADL 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  IT+ Y +G       RGDG  GE+  A    IP IP+        I   +
Sbjct: 121 WVQPKVDGVAITLVYRQGHLASMLSRGDGWRGEEWRAKASLIPAIPQQ-------IATTQ 173

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
            EV +    FL + D   A      A  + A + + R   P      +  +    G  + 
Sbjct: 174 DEVVLQGELFLQMTDHQQAQDGGKNARAQVAGAMMRRDDTPLLAQLGVFIWAWPDGPVAL 233

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q                   + N    + S+ +     +  LP+  DG+V     
Sbjct: 234 SERLAQLSRWGFG-----LTARWSERVNNEDEVASWRDRW--FQGKLPFVTDGIVIHQSP 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W  + K+   + S+ +  +   IGRTG +  V  L PV +    +
Sbjct: 287 VRRGRDWQPGQGE--WSAAWKYQPAEVSSEVRSVAFNIGRTGKIAVVLNLIPVQLDDKTV 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    D+  GD+V +  AG+ IP+V  +I      D    
Sbjct: 345 RRVNI-----------GSLRRWRELDVIAGDQVTLALAGQGIPRVERVIWRVAQRD---- 389

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF-NIEGLG 487
                            +           C         Q      ++S  +  +I G+ 
Sbjct: 390 ---------------YPDAPQSDDFNQLSCLTFSPPCRAQFLSRLSWLSEKSVLDISGIQ 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +        S     +I        L   Q      I  + G        ++   N+ R 
Sbjct: 435 RSTWQRLLDS----GTISHLFSWLALTPEQ------IAQVAGISPARAQQIWHRFNQTRQ 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
             L R++ +LG+  +     +++            +   +   + + W  L   P +G  
Sbjct: 485 QPLRRWVMALGL-PIPRAALQAMPD---------SQWQQLQLRSVESWQQL---PGIGGT 531

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP 634
           +AQ IV    + +    +  L ++  P
Sbjct: 532 LAQRIVTMLHDHQVQQLITFLQQQAIP 558


>gi|189426842|ref|YP_001949941.1| NAD-dependent DNA ligase [Ralstonia phage RSL1]
 gi|189233154|dbj|BAG41511.1| NAD-dependent DNA ligase [Ralstonia phage RSL1]
          Length = 625

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 118/710 (16%), Positives = 232/710 (32%), Gaps = 120/710 (16%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + A ++ +A+K               YY+    I+ D+E+DAL+     +   + +L ++
Sbjct: 3   VTAQNLNKAKKLYKQ-------ARVAYYEK-AEIMTDAEFDALEDSIRRLDPKWDELQKT 54

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                   K+  E+     +V       S  KI+           + ++  K     + +
Sbjct: 55  GT------KV--EVKNKKQEVKLLEFMPSKNKIYPE--------HVAKYAAKHASVEV-W 97

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIE 186
            +  K+DGT + + Y  G+      RGDG  G+D+S  +  +  I  +      +  ++ 
Sbjct: 98  NVSHKLDGTSLQLAYRGGRPWKLITRGDGALGKDISFFLPHLVKIGMIPDHIKTDALVVV 157

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246
            R E  +    F              Y N R  A+G+  R +       ++  V  +   
Sbjct: 158 FRCEGIMPVAVFEKKWA-------GKYDNARQLANGVFNRQDMHPALADVHMVVLSV--- 207

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
              +   Q E +   +  GF      R              +   R    Y++DGL+   
Sbjct: 208 ---YGMKQGEGIMYAKRQGF-HVVPTRMLKGRLDAEVLTRLLNKEREASIYEMDGLILV- 262

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQA--STRLLDIDIQIGRTGILTPVARLEPVNIG 364
              S +         P+ + + KF +++      +  +  Q  R     P   ++P  + 
Sbjct: 263 --PSPRIMSYTSPDRPKDITAFKFNDEENAAEVPVESVVWQKTRLHRWQPKITIKPTFMD 320

Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424
           G ++TN T HN  ++K            R I  G  V V R+G VIPK+V ++   +   
Sbjct: 321 GVMVTNVTAHNPAWMK-----------ERGIGPGAIVKVLRSGGVIPKIVGVVKKGKFQP 369

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                                   + ++   H     L                    IE
Sbjct: 370 PPGPYV-----EDGRLFRMTEGDASTEVRGIHHFMTTLG-------------------IE 405

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
            L  + +   ++            D   L         +   I       +    + +  
Sbjct: 406 LLASKTITKLYEEGF-----TTVYDYIDLAINGDEGRLQTAGIGVKMSQKIQAELERVLG 460

Query: 545 RRNISLERFIFSLGIRHVGAEIARS--LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
              I+L   + + G    G    +   L    +S +   +  +  +         L +V 
Sbjct: 461 S-TINLRLLMVASGCFRDGIGRRKLEALEAAGISMRFLLKSSDFALRG------ELSKVK 513

Query: 603 LVGDIIAQAIVE-------FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
              DI  +A+++       ++        V  LL EV  S+ + +K V+ ++  +  V  
Sbjct: 514 GFSDITIEAVIDGVNAFRKWFDE------VRELL-EVDGSLPKAKKVVTGKLTGQ-FV-- 563

Query: 656 GTLQKIQRHKAQEYVTQLGAVVS--AILSRKTDIIIVGD--NPGSKLEKA 701
            +    +    ++ V   G  +        KT I++        SK+EKA
Sbjct: 564 -SWTGYRNKDEEQKVEAWGGTIVPFGS---KTTILLYSPSGKTSSKVEKA 609


>gi|300714635|ref|YP_003739438.1| NAD-dependent DNA ligase [Erwinia billingiae Eb661]
 gi|299060471|emb|CAX57578.1| Putative NAD-dependent DNA ligase [Erwinia billingiae Eb661]
          Length = 563

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 131/635 (20%), Positives = 229/635 (36%), Gaps = 92/635 (14%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
              A +  +A +E+++LE ++S  DD YY+  +  + D  YDAL  +  +  H F     
Sbjct: 18  ACPAWTPARAEQEMNALENQLSAWDDAYYRAGEQKVPDDRYDALALKYQSWQHCF----- 72

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
              P   L +          KV H +  + ++K+ + + L +++                
Sbjct: 73  --APGSDLRQ---PALARNGKVLHPVAHVGVKKVADQQALSRWMA-----------GKDA 116

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
             ++PK+DG  +T+ Y++GK      RG+G  GED +   R IP IP+ ++L   + + +
Sbjct: 117 LWVQPKVDGVAVTLHYKRGKLAQVISRGNGLQGEDWTEKARFIPDIPQQIALG-SDSLVL 175

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247
           +GE+Y+   D                 N R   +G +RR  P+D    L  F+       
Sbjct: 176 QGELYLKMTDHQQTL--------LGGLNARATVAGAMRRNAPSDTLNRLGIFIWAWPDG- 226

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
                   E ++++   GFP+     +       V+ + E    +         +V+   
Sbjct: 227 ---PATLRERIERLSEAGFPMMGEWSKPVRSAEEVAGWRERWFAQPLPFVTDGVVVHSQP 283

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
                 Q GE A    W ++ K+     +T +  +D  IGRTG ++ V  L PV +    
Sbjct: 284 VKGAYWQPGENA----WSVAWKYPPATVTTEVRSVDFPIGRTGKISTVLNLVPVKLDDKQ 339

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           ++   +                    DI  GD+V V  AG+ IP++ +++   R  D   
Sbjct: 340 VSRVNV-----------GSFNRWREADIVAGDQVAVSLAGQGIPRLDEVVW--RVADRTL 386

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGL 486
                                   L     C      C  Q L RL     R A  + G 
Sbjct: 387 -----------------PELPDATLFHPLSCFSLTPVCRQQLLARLVWLSGRAALTLSGA 429

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
            +       +S              TL   Q +       I G        LY   N+  
Sbjct: 430 SESTWQRIMQSGQLTHL----FSWLTLTAEQLS------QIAGITPARANQLYHQFNQTH 479

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
               +R++ +LG+  V  +   +L               ++++    DW  L   P +G+
Sbjct: 480 QQPFKRWVRALGV-PVPNKALDALDD---------DNWQSLLSRKVADWQRL---PEIGE 526

Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
             A  IV F Q+P     +  L   +  SI    +
Sbjct: 527 RRAGQIVTFLQHPDVQALIAFLSTHLQQSISVQHE 561


>gi|317494707|ref|ZP_07953119.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917309|gb|EFV38656.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 571

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 107/556 (19%), Positives = 197/556 (35%), Gaps = 75/556 (13%)

Query: 7   IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            P    + E+A  E+S+L+Q+++  D+ Y+      + D  YD + +R  +    F  L 
Sbjct: 18  PPCPDWAAERATHEISALQQQMAKWDEAYFLQGSSPVSDEIYDQMAQRLKSWKQCF--LT 75

Query: 67  RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126
            S   N  L     E       ++H +    L K+ N   +R ++               
Sbjct: 76  NSSSSNSAL-----EPTSPRNTLSHPVAHTGLNKLENEAAVRDWLK-----------GKE 119

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
              ++PKIDG  +T+ Y+ G+      RGDG  G+D +    +I  IP+ +  +      
Sbjct: 120 SVWIQPKIDGVAVTLHYQHGRLKSMISRGDGLIGQDWTKASASISAIPKKIPDD-EAYTV 178

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246
           ++GE+      FL + D          A  + A +  L+ L+     +   F        
Sbjct: 179 LQGEL------FLKVTDHQQKRDGGINARSKVAGAMRLKFLSSETANQLEIF-----IWG 227

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                    + L K+  LGFP+      A T   +          +  LP+  DG+V  +
Sbjct: 228 YPDGPAEMPQRLNKLARLGFPLAEQYTHAVTDV-VDVEKWREYWYQQPLPFVTDGIVLHM 286

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            +      +  R   P W  + K+  K + T + D+   IGR+G +  V  LEPV +   
Sbjct: 287 AQ--QPASVLWRPSPPGWAAAWKYPLKSSVTEVKDVQFSIGRSGRINAVLLLEPVTVDDK 344

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            ++  +L              +     D++  D+V V  AG+  P +  +I         
Sbjct: 345 RVSRVSL-----------GSVMRWQQWDVQPHDQVSVVLAGQGTPHLEKVIWR------- 386

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
                       S     +N        +  C    A   +Q    +      +  I G+
Sbjct: 387 ------------SPERVIVNAPDRGKYHSLSCWH-YAPGCEQQFIARVVWMAQSLGITGV 433

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+       +S + +       D+  L   +  S        G G      L  +I + +
Sbjct: 434 GEAFWRELAQSGELSDL----DDVLALTEHRLVSR-------GMGINRAQRLSAAIERIK 482

Query: 547 NISLERFIFSLGIRHV 562
            +    ++ +LG+   
Sbjct: 483 LVPSGAWLRALGMPST 498


>gi|289679598|ref|ZP_06500488.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
           FF5]
          Length = 245

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 94/231 (40%), Positives = 143/231 (61%), Gaps = 2/231 (0%)

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180
           + + + ++ EPK+DG  +++ Y  G  V  A RGDG +GED+S  +R +  IP  L    
Sbjct: 14  EGSKVQYSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKG 73

Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239
            P+++EVRGEV++SK  F  LN   + +G K +ANPRNAA+G LR+L+      R L F 
Sbjct: 74  WPDVLEVRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFC 133

Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299
            +GLG+TS   A     +L+ ++  G PV+  ++ AN     ++YY ++   R  L Y+I
Sbjct: 134 CYGLGQTSAEIADTHIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEI 193

Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
           DG+V+KV+  + Q++LG RAR PRW I+HKF   +  T LLD++ Q+GRTG
Sbjct: 194 DGVVFKVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTG 244


>gi|152972501|ref|YP_001337647.1| NAD-dependent DNA ligase LigB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|166226364|sp|A6TFP6|LIGB_KLEP7 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|150957350|gb|ABR79380.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 564

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 110/611 (18%), Positives = 206/611 (33%), Gaps = 90/611 (14%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+E S L Q+I    + Y++     + D  YD L  R       FP  A  ED + P   
Sbjct: 36  RQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPG-ATPEDDDLP--- 91

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
                        H +    + K+ + + + +++            N     ++PK+DG 
Sbjct: 92  ---PPTGD---ARHPVAHTGVRKLADEDSVARWMK-----------NKSDLWIQPKVDGV 134

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+ Y +G+ V A  RGDG  GE  +A  R IP + +V++        ++GE+++ ++ 
Sbjct: 135 AVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGE-LADSVLQGELFLRRDG 193

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
                       +    N R   +G++ R +       L+ F+           + Q  +
Sbjct: 194 --------HVQQQTGGMNARAKVAGLMMRADAAAALSQLDVFIWAWPDGPSDMRRRQQLL 245

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
            Q          + V +          +       S LP+  DG++ +       +    
Sbjct: 246 AQAGFKYSGQYTHPVSRIEQVAQWRQRWYR-----SPLPFVSDGVIVREGREPPGRVWSP 300

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
                 W+ + K+       ++  I   IGR+G L  VA LEP  +    +    +    
Sbjct: 301 GKGE--WLAAWKYPPASRVMQVRAIRFSIGRSGRLNVVAELEPQRLDDKRVQRVNV---- 354

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
                           DI VGD++ +  AG+ IP+V  ++               F  + 
Sbjct: 355 -------GSVSRWQMLDIGVGDQLQISLAGQGIPRVDAVVWRTAERHKPTPPPAKFNALT 407

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
                 + +                    Q L RL    S+ A N++G+G+       + 
Sbjct: 408 CYFATPECSE-------------------QFLSRLIWLSSKSALNVDGVGENLWRVIQQQ 448

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +        L   Q  +      + G       +L+   +  R     R++ ++
Sbjct: 449 N----PMTHIFSWLALTVEQLQA------VPGISAARGQHLWHQFDLVRKRPFIRWVLAM 498

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI      +A+              E  N              +P VG+I A+ +V F  
Sbjct: 499 GIPVPQGALAQL-------------ESENWHLLAAKSEAQWRTLPGVGEIRARQLVAFLH 545

Query: 618 NPRNICAVEAL 628
           +P  +   + L
Sbjct: 546 HPDVVALAQWL 556


>gi|238897097|ref|YP_002921843.1| NAD-dependent DNA ligase LigB [Klebsiella pneumoniae NTUH-K2044]
 gi|238549425|dbj|BAH65776.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 565

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 110/611 (18%), Positives = 205/611 (33%), Gaps = 90/611 (14%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+E S L Q+I    + Y++     + D  YD L  R       FP  A  ED + P   
Sbjct: 37  RQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPG-ATPEDDDLP--- 92

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
                        H +    + K+ + + + +++            N     ++PK+DG 
Sbjct: 93  ---PPTGD---ARHPVAHTGVRKLADEDSVARWMK-----------NKSDLWIQPKVDGV 135

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+ Y +G+ V A  RGDG  GE  +A  R IP + +V++        ++GE+++ ++ 
Sbjct: 136 AVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGE-LADSVLQGELFLRRDG 194

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
                      G     N R   +G++ R +       L+ F+           + Q  +
Sbjct: 195 -----HVQQRAGGM---NARAKVAGLMMRADAAAALSQLDVFIWAWPDGPSDMRRRQQLL 246

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
            Q          + V +          +       S LP+  DG++ +       +    
Sbjct: 247 AQAGFKYSGQYTHPVSRIEQVAQWRQRWYR-----SPLPFVSDGVIVREGREPPGRVWSP 301

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
                 W+ + K+       ++  I    GR+G L  VA LEP  +    +    +    
Sbjct: 302 GKGE--WLAAWKYPPASRVMQVRAIRFSTGRSGRLNVVAELEPQRLDDKRVQRVNV---- 355

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
                           DI VGD++ +  AG+ IP+V  ++               F  + 
Sbjct: 356 -------GSVSRWQMLDIGVGDQLQISLAGQGIPRVDAVVWRTAERHKPTPPPAKFNALT 408

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
                 + +                    Q L RL    S+ A N++G+G+       + 
Sbjct: 409 CYFATPECSE-------------------QFLSRLIWLSSKSALNVDGVGENLWRVIQQQ 449

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +        L   Q  +      + G       +L+   +  R     R++ ++
Sbjct: 450 N----PMTHIFSWLALTVEQLQA------LPGISAARGQHLWHQFDLVRKRPFIRWVLAM 499

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI      +A+              E  N              +P VG+I A+ +V F  
Sbjct: 500 GIPVPQGALAQL-------------ESENWHLLAAKSEAQWRTLPGVGEIRARQLVAFLH 546

Query: 618 NPRNICAVEAL 628
           +P  +   + L
Sbjct: 547 HPDVVALAQWL 557


>gi|325922521|ref|ZP_08184282.1| NAD-dependent DNA ligase [Xanthomonas gardneri ATCC 19865]
 gi|325546986|gb|EGD18079.1| NAD-dependent DNA ligase [Xanthomonas gardneri ATCC 19865]
          Length = 590

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 77/149 (51%), Gaps = 6/149 (4%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLV-GDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
           Q  A  +++  A  +    +L++   V   ++A ++ ++ + P N        + +   +
Sbjct: 441 QQLAAAVDSFDALRSAGADALLQ-AGVPAPVVA-SVQQWLERPENAALASDAQQAMETVL 498

Query: 637 GRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
            R  +     +  ++ + +V TGTL  + R  A++ +  LGA V+  +S+KT  ++ G+ 
Sbjct: 499 SRLPEADALQTGPLDGQTVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEE 558

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            GSKL+KAQ LGV+I +E + L  L ++ 
Sbjct: 559 AGSKLDKAQSLGVEIWDEARLLAFLGEHG 587



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 124/432 (28%), Positives = 201/432 (46%), Gaps = 70/432 (16%)

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           ++R  GFPV+  V       G+++YY  + + R  LP+DIDG+VYK+D+ + Q+++G  +
Sbjct: 4   QLREWGFPVSALVEVVQGSDGLLAYYQRIGAARDGLPFDIDGVVYKLDDLAGQREMGFVS 63

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           R+PRW I+HKF  ++ ST +  I+IQIGRTG  TPVARL+PV++ G ++TNATLHN D I
Sbjct: 64  RAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQI 123

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439
             L           D+RVGD V+V+RAG+VIP+V  ++ ++R P  QP+  P+ CP+C S
Sbjct: 124 ARL-----------DVRVGDTVIVRRAGDVIPEVAGVVADQRPPGTQPWQMPTQCPVCGS 172

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            +VR+         A  RC+G L C AQ+ E  +HFVSR A +++GLG++ ++    S  
Sbjct: 173 EIVREEGE------AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDS-- 224

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI----- 554
               ++  AD++ L   Q      I                             +     
Sbjct: 225 --GVVQGVADLYLLTVDQLLQLRLISTAESPHAFLREAREHLATGAYAQLENTVVSIGVD 282

Query: 555 ----------------------FSLGIRHVGAEIARSLAKYYL----------------- 575
                                 F    + +  + A +L +                    
Sbjct: 283 LAGEREVPQTWQADLLRAGLPAFDWNRKKIATKWAENLIEAIEKSRDTTLERFLFALGIE 342

Query: 576 -----SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
                + +  +    ++    +  W    RVP +G  +A+++  F   P N  A++ LL+
Sbjct: 343 HVGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFLDQPGNQQAIDDLLQ 402

Query: 631 EVSPSIGRHEKN 642
                   H  +
Sbjct: 403 RGVRIGDAHPPS 414


>gi|329996951|ref|ZP_08302648.1| NAD-dependent DNA ligase OB-fold domain protein [Klebsiella sp. MS
           92-3]
 gi|328539241|gb|EGF65270.1| NAD-dependent DNA ligase OB-fold domain protein [Klebsiella sp. MS
           92-3]
          Length = 564

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 109/611 (17%), Positives = 205/611 (33%), Gaps = 90/611 (14%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+E S L Q+I    + Y++     + D  YD L  R       FP  A  ED + P   
Sbjct: 36  RQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPG-ATPEDDDLP--- 91

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
                        H +    + K+ + + + +++            N     ++PK+DG 
Sbjct: 92  ---PPTGD---ARHPVAHTGVRKLADEDSVARWMK-----------NKSDLWIQPKVDGV 134

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+ Y +G+ V A  RGDG  GE  +A  R IP + +V++        ++GE+++ ++ 
Sbjct: 135 AVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGE-LADSVLQGELFLRRDG 193

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
                       +    N R   +G++ R +       L+ F+           + Q  +
Sbjct: 194 --------HVQQQAGGMNARAKVAGLMMRADAAAALGQLDVFIWAWPDGPSDMRRRQQLL 245

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
            Q          + V +          +       S LP+  DG++ +       +    
Sbjct: 246 AQAGFKYSGQYTHPVSRIEQVAQWRQRWYR-----SPLPFVSDGVIVREGREPPGRVWSP 300

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
                 W+ + K+       ++  I    GR+G L  VA LEP  +    +    +    
Sbjct: 301 GKGE--WLAAWKYPPASRVMQVRAIRFSTGRSGRLNVVAELEPQRLDDKRVQRVNV---- 354

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
                           DI VGD++ +  AG+ IP+V  ++               F  + 
Sbjct: 355 -------GSVSRWQMLDIGVGDQLQISLAGQGIPRVDAVVWRTAERHKPTPPPAKFNALT 407

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
                 + +                    Q L RL    S+ A N++G+G+       + 
Sbjct: 408 CYFATPECSE-------------------QFLSRLIWLSSKSALNVDGVGENLWRVIQQQ 448

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +        L   Q  +      + G       +L+   +  R     R++ ++
Sbjct: 449 N----PMTHIFSWLALTVEQLQA------VPGISAARGQHLWHQFDLVRKRPFIRWVLAM 498

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI      +A+              E  N              +P VG+I A+ +V F  
Sbjct: 499 GIPVPQGALAQL-------------ESENWHLLAAKSEAQWRTLPGVGEIRARQLVAFLH 545

Query: 618 NPRNICAVEAL 628
           +P  +   + L
Sbjct: 546 HPDVVALAQWL 556


>gi|300725264|ref|YP_003714593.1| DNA ligase [Xenorhabdus nematophila ATCC 19061]
 gi|297631810|emb|CBJ92531.1| DNA ligase [Xenorhabdus nematophila ATCC 19061]
          Length = 577

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 103/620 (16%), Positives = 201/620 (32%), Gaps = 82/620 (13%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + E+ + E + L+Q+++  D  Y Q     I D  YD L      +     +        
Sbjct: 38  TQEKLQHETAHLKQQMAKWDHLYRQQGISEIDDEIYDQLLETLR-LWQRCSEQIPEGTF- 95

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
                          K  H +    L K+  +  +R+++    + W           L+P
Sbjct: 96  -------AVPVSQEGKQPHPVQHTGLHKLKEVRGVRQWLQGRTKVW-----------LQP 137

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           KIDG  +T+ YEKG+ +    RG+G  G D       I +IP  L  + PE + ++GE+ 
Sbjct: 138 KIDGVAVTLIYEKGQLMRLISRGNGIEGTDWMDKSPFISSIP-KLIKHAPEHLVLQGEL- 195

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
                F               A  + A   + +   P  + +   F       +      
Sbjct: 196 -----FWQQKSHRQFTVGSQGARSKVAGLMMRKTPEPEALRQIGIF-----IWSWPDGPT 245

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
                 +++  +GFP+        T     +           LP+  DG+V + +     
Sbjct: 246 DMVAKSEQLASMGFPLTQQYSHPITHID-DAEKRWTDYFVQPLPFATDGVVLRQEI--EP 302

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
                R  S  W I+ K+  +Q  T + D++  IGRTG ++ V  LE V +    ++  +
Sbjct: 303 TGRQWRTGSNSWAIAWKYPLRQQVTTVKDVNFTIGRTGRISVVLMLEKVRLDDRQVSRVS 362

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           +                   R++  GD++ V  AG  IPK+  ++               
Sbjct: 363 I-----------GSVKRWKQRNVYPGDKITVALAGHGIPKLDKVVWRMVERPVIQLPDEQ 411

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
                    +          V  H C                        +  LG++   
Sbjct: 412 HYHFLSCLSLNHEGGTGVNDVNEHPCQQQF-----------------IARLTWLGEKLKM 454

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
                   +  ++    +  L         ++E + G G      L+    + ++  +  
Sbjct: 455 KGVGPGTWSLLVKHGM-VTNLTDWLALDQVRLEKVPGIGSKRAELLFSQFRQAKSRPVSL 513

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           +  ++G+ +         A  +  +  +  E+  +  H      +            + I
Sbjct: 514 WREAVGLPY---------ANRFTDHIGWPWEVQLLDKHIKGSLTA---------KQREKI 555

Query: 613 VEFYQNPRNICAVEALLKEV 632
           + F Q+P    AV+ L  + 
Sbjct: 556 LAFLQHPEIKAAVDILDSQG 575


>gi|108809492|ref|YP_653408.1| NAD-dependent DNA ligase LigB [Yersinia pestis Antiqua]
 gi|167402095|ref|ZP_02307572.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|123072562|sp|Q1C259|LIGB_YERPA RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|108781405|gb|ABG15463.1| putative DNA ligase [Yersinia pestis Antiqua]
 gi|167048470|gb|EDR59878.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           UG05-0454]
          Length = 567

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 103/624 (16%), Positives = 197/624 (31%), Gaps = 93/624 (14%)

Query: 17  ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76
              E+++LEQ+++     Y+Q     + D  YD L+ +                P+    
Sbjct: 37  IAVEINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSC------RGLPD---- 86

Query: 77  KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
           K   +      +  H +    L+K+ +   L +++      W           ++PK+DG
Sbjct: 87  KTESQPIPGKGQFLHPVAHSGLKKLKDETALTRWMAGRKNLW-----------VQPKVDG 135

Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196
             +T+ Y  GK V    RG+G  G++ +     I  IP+ ++   P ++ ++GE+++  +
Sbjct: 136 VAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIANA-PALLTLQGELFLLMD 194

Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256
                       G    +    A            +  ++  +  G     E  A  Q  
Sbjct: 195 GHQQAKS----GGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDGPTTMKEKVALLQVM 250

Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
                     PV + +                   ++ LP+  DG+V + +E    +   
Sbjct: 251 GFPFTAKYSEPVMSHLDVVQ---------WRQFWFQAPLPFVTDGVVVRQEEEPAGRYWQ 301

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376
                  W ++ K+   Q    + DI   +GRTG  T V  + P+ I    I    +   
Sbjct: 302 ATPGQ--WSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWIRRVNI--- 356

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
                            DI  GD + +  AG  IP++ +++              +    
Sbjct: 357 --------GSVTRWKQWDIAPGDHITLALAGHGIPRLDNVV--------WRVHQRNTITA 400

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
                   L+                 C  Q L RL         +I G+G         
Sbjct: 401 PNWDKFHQLS---------CFQRLPHGCEPQFLSRLIWLSGPGGLDIGGIGGGFWQELIH 451

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
            E     I        L   Q  S      I G G+     +Y    + +     R++ +
Sbjct: 452 HE----LINDLVGWLLLTPEQIAS------IPGIGNARAEKIYQQFQRAKQQPFSRWLLA 501

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           LG   V +  A+                  ++  +  +W ++     +G + A+ I  F 
Sbjct: 502 LGFPQVVSVDAQ---------------WQVVLRRSLSEWATMA---GIGQMRAKQIKHFL 543

Query: 617 QNPRNICAVEALLKEVSPSIGRHE 640
            +P      + L  +        E
Sbjct: 544 DHPDVQALADFLSTQKVVGFELTE 567


>gi|262045607|ref|ZP_06018626.1| NAD-dependent DNA ligase adenylation domain protein [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259037033|gb|EEW38285.1| NAD-dependent DNA ligase adenylation domain protein [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 564

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 107/611 (17%), Positives = 204/611 (33%), Gaps = 90/611 (14%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           R+E S L Q+I    + Y++     + D  YD L  R       FP  A  ED + P   
Sbjct: 36  RQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPG-ATPEDDDLP--- 91

Query: 78  IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137
                        H +    + K+ + + + +++            N     ++PK+DG 
Sbjct: 92  ---PPTGD---ARHPVAHTGVRKLADEDSVARWMK-----------NKSDLWIQPKVDGV 134

Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197
            +T+ Y +G+ V A  RGDG  GE  +A  R IP + +V++        ++GE+++ ++ 
Sbjct: 135 AVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGE-LADSVLQGELFLRRDG 193

Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257
                       +    N R   +G++ R +       L+ F+           + Q  +
Sbjct: 194 --------HVQQQAGGMNARAKVAGLMMRADAAAALSQLDVFIWAWPDGPSDMRRRQKLL 245

Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317
            Q          + V +          +       S LP+  DG++ +       +    
Sbjct: 246 AQAGFKYSGQYTHPVSRIEQVAQWRQRWYR-----SPLPFVSDGVIVREGREPPGRVWSP 300

Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377
                 W+ + K+       ++  I    GR+G L  VA LE   +    +    +    
Sbjct: 301 GKGE--WLAAWKYPPASRVMQVRAIRFSTGRSGRLNVVAELEAQRLDDKRVQRVNV---- 354

Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437
                           DI VGD++ +  AG+ IP+V  ++               F  + 
Sbjct: 355 -------GSVSRWQMLDIGVGDQLQISLAGQGIPRVDAVVWRTAERHKPTPPPAKFNALT 407

Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
                 + +                    Q L RL    S+ A +++G+G+       + 
Sbjct: 408 CYFATPECSE-------------------QFLSRLIWLSSKSALDVDGVGENLWRVIQQQ 448

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                 +        L   Q  +      + G       +L+   +  R     R++ ++
Sbjct: 449 N----PMTHIFSWLALTVEQLQA------VPGISAARGQHLWHQFDLVRKRPFIRWVLAM 498

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI      +A+              E  N              +P VG+I A+ +V F  
Sbjct: 499 GIPVPQGALAQL-------------ESENWHLLAAKSEAQWRTLPGVGEIRARQLVAFLH 545

Query: 618 NPRNICAVEAL 628
           +P  +   + L
Sbjct: 546 HPDVVALAQWL 556


>gi|213850350|ref|ZP_03381248.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 110

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 3/110 (2%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P ILD+EYD L R    +    PDL     P+ 
Sbjct: 1   MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123
           P  ++G     +  ++ H +P LSL+ +++ E    F  R+    +  ++
Sbjct: 58  PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN 107


>gi|304399036|ref|ZP_07380905.1| DNA ligase (NAD(+)) [Pantoea sp. aB]
 gi|304353496|gb|EFM17874.1| DNA ligase (NAD(+)) [Pantoea sp. aB]
          Length = 583

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 118/622 (18%), Positives = 218/622 (35%), Gaps = 89/622 (14%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           +  +A +E+  L+Q++ + DD YY+  +  + D++YDAL++R     H F     +  P 
Sbjct: 29  TPVRATEEIGRLQQQLQHWDDAYYRQGQSPVTDTDYDALQQRLVTWQHCFSASQPTYSPQ 88

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P             +  H I    ++K+ +   L  ++      W           ++P
Sbjct: 89  LP----------GKGEHLHPIAHTGVKKMRDKLALAYWMQGRRDLW-----------VQP 127

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +++ Y  G+ V    RGDG  GE+  A    IP IP  +   +        EV 
Sbjct: 128 KVDGIAVSLVYRHGRLVSLLSRGDGLRGEEWLAKAAWIPAIPLHIETPLD-------EVV 180

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +    FL +N    A+      N R+  +G +     T +   L  F+           +
Sbjct: 181 LQGELFLLMNGHQQAIDG--GKNARSLVAGAMMSRQRTPLLDSLGVFIWAWPDGPATMTE 238

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              ++ +    +    ++ V+               +   + LP+  DG+V         
Sbjct: 239 RHEQLSRWGLGIAAEWSHNVK-----DEEDVAIWRERWFHAALPFVTDGVVVHQSLRPAG 293

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           K          W ++ K+   + S  +L +D  IGRTG +  V  L+PV +    +    
Sbjct: 294 KNWLPGEGI--WAVAWKYQPPEVSAEVLSVDFLIGRTGKIAAVLNLQPVQLDDKTVRRVN 351

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           +                    DI  GD V +  AG+ IP++  +I               
Sbjct: 352 V-----------GSLRRWQESDIVAGDVVTLSLAGQGIPRLERVIWRV------------ 388

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
                 +       P+  +       T    C  Q L +L+    +   NI G+ +    
Sbjct: 389 ------AERHYPQPPEASRYTPLSCYTFSAECQKQLLAKLRWLSQKTVLNIPGVERSTWL 442

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +S              TL   Q  + T +             L+   N  R     R
Sbjct: 443 RLLESGSMTHL----FGWLTLTPEQIAAATAL------SPERAEQLWHRFNLARQQPFRR 492

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           ++ +LG+  +  +   +L           Q+  +I+  +   W +L   P VG  +A  +
Sbjct: 493 WVKALGV-SLPQKALNALPD---------QQWESIMRRDVMAWQTL---PGVGAGLATRL 539

Query: 613 VEFYQNPRNICAVEALLKEVSP 634
            E +Q+ R    +  L ++  P
Sbjct: 540 AEQFQDARLQALIAFLQQQGIP 561


>gi|322652149|gb|EFY48511.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
          Length = 100

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 3/98 (3%)

Query: 624 AVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
            +  LL E       +  + + + S    K +V TG+L ++ R  A+  +  +GA V+  
Sbjct: 1   MIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAKARLVAVGAKVAGS 60

Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           +S+KTD++I G+  GSKL KAQ+LG+ +++E + + LL
Sbjct: 61  VSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 98


>gi|237728943|ref|ZP_04559424.1| NAD-dependent DNA ligase LigB [Citrobacter sp. 30_2]
 gi|226909565|gb|EEH95483.1| NAD-dependent DNA ligase LigB [Citrobacter sp. 30_2]
          Length = 559

 Score =  156 bits (395), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 111/619 (17%), Positives = 219/619 (35%), Gaps = 93/619 (15%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           S  +A +E+S L+Q+I+  +D Y++  +  + D  YD L  +       F D A      
Sbjct: 26  SPARANEEISRLQQQITQWNDSYWKQGESAVDDGVYDQLNAQLIQWQRCFGDEAP----- 80

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
            P   +          V+H +P   + K+ + + L +++                  ++P
Sbjct: 81  -PDLSV--PPISG--TVSHPVPHTGVRKLADKQALHQWM-----------HARSDLWVQP 124

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +T+ Y KG  V A  RG+G  GED +  +  IP++P            ++GE++
Sbjct: 125 KVDGVAVTLVYRKGNLVRAISRGNGLKGEDWTQKVLQIPSVPHSTKGK-LANSTLQGEIF 183

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           +               G     N R+  +G++ R   T++ R L  F+        +  +
Sbjct: 184 L-----QQEGHIQKQRGGM---NARSKVAGLMMRQGNTEMLRSLAIFIWAWPDGPAVMPE 235

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
              ++              V+ A+      + +       S LP+  DG+V +  +    
Sbjct: 236 RLEQLTAAGFSYTQRYTQAVKNADDVEKSRARWW-----SSALPFVTDGVVVRTAKEPRA 290

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
           +          W+ + K+      + +  I   +G++G +  VA L PV +    +    
Sbjct: 291 QYWLPGQGD--WLAAWKYPPVTRVSEVTGIQFSVGKSGKIAVVALLTPVMLDDKRVQRVN 348

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           +                    DI  GD++LV  AG+ IP++ +++               
Sbjct: 349 I-----------GSVRRWNEWDIAPGDQILVSLAGQGIPRIDEVVWR------------- 384

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
                 S       P  G+  +         C  Q + RL     ++   +EG+G+    
Sbjct: 385 ------STQRTKPIPPEGRFNSLTCFYATAECQEQFVARLVWLGGKEVLGLEGIGEAGWR 438

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              +                L + Q  S   +             L+   N  R++   R
Sbjct: 439 ELNQVYRFE----HIFSWLGLTQEQLESALGVIKGE--------KLWHQFNLSRDLPFTR 486

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           ++ ++GI       A   A    S+Q   +           D  S  ++P +G+  A+ +
Sbjct: 487 WVIAMGI---PLTQATLNASRDGSWQQLKE----------RDEQSWRQLPFMGERRARQV 533

Query: 613 VEFYQNPRNICAVEALLKE 631
           +++    R + A+   L  
Sbjct: 534 IQWL-EDREVTALSNWLAA 551


>gi|260599943|ref|YP_003212514.1| NAD-dependent DNA ligase LigB [Cronobacter turicensis z3032]
 gi|260219120|emb|CBA34475.1| DNA ligase B [Cronobacter turicensis z3032]
          Length = 550

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 110/620 (17%), Positives = 216/620 (34%), Gaps = 92/620 (14%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
           + EQAR+E+++LE +++  D+ Y+   +  + D+ YD +++R +     F     S  P 
Sbjct: 14  TSEQARQEVAALESQLARWDEAYWLRGENNVSDAVYDGMRQRLNVWKTCFSLATVSAAP- 72

Query: 73  GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132
                       +     H +    ++K+ +   L +++                  ++P
Sbjct: 73  --------PPVAAGRTH-HPVAHTGVQKLKDAASLSQWM-----------HGKTDLWVQP 112

Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192
           K+DG  +++ Y KG+      RGDG  GED +A  R IP IP  +         ++GE++
Sbjct: 113 KVDGVAVSLVYRKGELRQVISRGDGLQGEDWTARARHIPAIPLQVKGE-LADSVLQGELF 171

Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252
           + +              +    N R   +G + R   + +   L+ F+       +    
Sbjct: 172 LRREG--------HHQQQDGGINARAQVAGAMMRNTASPLLNDLDLFIWAWPDGPKEM-- 221

Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
                L  +   GFP+    R  +     V+     +      P         + E    
Sbjct: 222 --ETRLTILAQGGFPL---ARAWSQPVSSVADVTRWRKQWFREPLPFVTDGVVIREAREP 276

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
                R     W+ + K+   +  T +  +   +GRTG ++ VA+LEP+ +    ++  +
Sbjct: 277 PGKSWRPGEGSWVAAWKYPPVKQVTEVNALRFAVGRTGKISVVAQLEPITLDDKQVSKVS 336

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
           +                    D+  GD V V  AG+ IP++                   
Sbjct: 337 I-----------GSLTRWEKLDLAEGDEVEVSLAGQGIPRLD------------------ 367

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLGKQQL 491
              +      R           A  C      C  Q + RL     +  F++ G+G+   
Sbjct: 368 --AVVWRPAKRSKPAPPAARFDALSCLFATGACEEQFISRLVWLSGKPVFDLAGMGEATW 425

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551
                                L      S   ++   GF     T L+   N  R +  +
Sbjct: 426 RQLSSR----------HRFEHLFSWLALSVDALKQTPGFSAPRATRLWHQFNLTRQLPFQ 475

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
           R++ +LG+  + A   ++LA             + +   +   W +L   P VG   A+ 
Sbjct: 476 RWVKALGL-PLPARAWQALAD---------DTWHQLQMRDERSWQTL---PGVGAERARQ 522

Query: 612 IVEFYQNPRNICAVEALLKE 631
           +V +  +P      + L+++
Sbjct: 523 LVNYIHHPDVAALAQWLVEQ 542


>gi|289679597|ref|ZP_06500487.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
           FF5]
          Length = 102

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           ++     +  L  E+  H+  Y+   +P I D EYD L     A+    P L     P+ 
Sbjct: 1   MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118
           P  ++G     +  +V H +P LSL   +   D+ +F  R+    
Sbjct: 58  PTQRVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTAGL 102


>gi|322835054|ref|YP_004215081.1| DNA ligase (NAD(+)) [Rahnella sp. Y9602]
 gi|321170255|gb|ADW75954.1| DNA ligase (NAD(+)) [Rahnella sp. Y9602]
          Length = 565

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 116/630 (18%), Positives = 211/630 (33%), Gaps = 90/630 (14%)

Query: 2   KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
           K            E+  +E   L  +++  D  Y+Q     I DS YD L+++   +   
Sbjct: 20  KNMPSPDCPVWPSERLTQETHHLTAQLTQWDAAYHQSGSSPIEDSVYDHLRQK-QRL--- 75

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
                +      P   +         + TH +    L K+ +   +  ++      W   
Sbjct: 76  ---WLQCASQPVPELTV---PASDDAEFTHPVAHTGLHKMKDKHAVANWMQGRKNLW--- 126

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
                   ++PKIDG  +++ Y  G+      RGDG  G++ +    +IP IP  +    
Sbjct: 127 --------VQPKIDGVAVSLIYRYGQLAALVSRGDGEKGQNWTVKAASIPAIPLHIPDMS 178

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVH 241
           PE+I ++GE+Y+         D           N R+  +G + R + +D+ +    F+ 
Sbjct: 179 PELI-LQGELYLLMTGHQQSAD--------GGMNARSKVAGAMMRASASDLLKQTGIFIW 229

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
                  + A    + L+K+   GFPV      A +                 LP+  DG
Sbjct: 230 SWPDGPTLMA----DHLEKLSQFGFPVVAQFTHAVSAVE-DVEKWREDWFHQPLPFATDG 284

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V +  E    K    +     W ++ K+   +  T +  I    GR+G +T +  L+P+
Sbjct: 285 VVVRQQEEPAGKYWQNKPAV--WAVAWKYPPARQLTDVTGITTTTGRSGKVTVILNLKPL 342

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +   L           +  +           D+  GD+V V  AG+ IP++ ++     
Sbjct: 343 RLDDKL-----------VSKVSVGSVSRFRQWDVLPGDQVAVALAGQGIPRLDEVTWRV- 390

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
                            S+      P+  +  A    T    C  Q L RL      +A 
Sbjct: 391 -----------------SKRTEMPLPEPTRYNALSCFTPEPGCMQQFLSRLIWLSGPEAL 433

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           ++ G G         +      I               +  ++  + G G      L   
Sbjct: 434 DMAGFGGATWQKLLDASPADSLIS----------WLSFNEKELAAVPGIGVKQAQKLMAQ 483

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           I+  R  S  R++ ++G        A              Q  N +    + DW      
Sbjct: 484 IHLAREKSFRRWLSAIGFPSFALGFAER-----------QQSWNRLKQLTSRDWEM---T 529

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
             +G   A  + +F  +P      EAL + 
Sbjct: 530 EGIGRKRAAQVFDFIHHPDVEILTEALRQA 559


>gi|325499453|gb|EGC97312.1| NAD-dependent DNA ligase LigB [Escherichia fergusonii ECD227]
          Length = 547

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 107/619 (17%), Positives = 210/619 (33%), Gaps = 93/619 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E+S L+ ++    D Y++  K  + D  YD L  R       F      ++ + 
Sbjct: 13  PARANEEISRLQLQLKQWSDTYWKEGKSTVEDHVYDQLSARLAQWQRCF-----GDNADS 67

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
                          V H +    + K+ +   L++++      W           ++PK
Sbjct: 68  ETMM---PPISG--TVMHPVAHTGVRKLADKNALQQWMRARRDVW-----------VQPK 111

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y  GK   A  RG+G  GED +  +R IP++P+ +S        ++GE+Y+
Sbjct: 112 VDGVAVTLVYRDGKLNQAISRGNGLKGEDWTQRLRLIPSVPQNVSGP-LANSTLQGEIYL 170

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +              +    N R+  +G++ R   TD    L  F+       +     
Sbjct: 171 QREG--------HIQQQMGGMNARSKVAGMMMRHGNTDTLNSLGVFIWAWPDGPQSMP-- 220

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
              +               R+ N+   +    +E    ++ LP+  DG+V +V +    +
Sbjct: 221 -ERLQILTAAGFILTQQYTREVNSAREVEQIRSEW--WKTKLPFVTDGVVVRVGKEPDSR 277

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+        +  I   +G++G +  VA L P+ +    +    +
Sbjct: 278 HWQPGQGD--WLAAWKYPPIAQVAEVNAIHFTVGKSGKIAVVASLAPIKLDDKRVQRVNI 335

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++                    
Sbjct: 336 -----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID------------------- 365

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
             +      R           +  C      C  Q + RL    S+    ++G+G+    
Sbjct: 366 -NVVWRGTERTKPTPPENRFNSLTCYFASDVCREQFISRLVWLGSKQVLGLDGIGEAGWR 424

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              ++               L   Q  +T       G        L+   N  R     R
Sbjct: 425 ALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARKQPFTR 474

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           ++ ++GI    A +   L   + S+Q    +          DW  L   P  G   A  +
Sbjct: 475 WLMAMGIPLTQAALKSHL---FDSWQQVMSQTKQ-------DWQQL---PGTGSRRASQV 521

Query: 613 VEFYQNPRNICAVEALLKE 631
           +++ ++  +I  + + +  
Sbjct: 522 IKW-RDDSDISVLRSWMSA 539


>gi|166226376|sp|A8ARN4|LIGB_CITK8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 560

 Score =  153 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 112/624 (17%), Positives = 221/624 (35%), Gaps = 93/624 (14%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
                S  +A  E++ L+Q+++  +D Y+Q     + DS YD L  +       F     
Sbjct: 21  ACPDWSPARANDEIARLQQQLAQWNDSYWQQGVSAVDDSVYDQLSAQLVQWQRCFGGDTG 80

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           +E                   + H +P   + K+ + + +++++ +    W         
Sbjct: 81  AEL---------APPVSG--SLPHPVPHTGVRKLADKQAVQQWMRKRSDLW--------- 120

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
             ++PK+DG  +T+ Y  G+ V A  RG+G  GED +  +R IP +P+           +
Sbjct: 121 --VQPKVDGVAVTLVYRDGRLVSAISRGNGLKGEDWTQKVRLIPAVPQSTKGA-LANSTL 177

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247
           +GE+++     L  N     +G     N R+  +G++ R N T   + L+ F+       
Sbjct: 178 QGEIFL-----LHDNHIQRQMGGM---NARSKVAGMMMRQNNTSSLQSLSVFIWAWPDGP 229

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               +   ++           +  V+ A+    + + +       + LP+  DG+V +  
Sbjct: 230 ATMPERLRQLSGAGFGFAQQYSQPVKSADDVERVRTAWW-----TTGLPFVTDGVVVRTG 284

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +          W+++ K+        +  +   +G++G ++ VA L PV +    
Sbjct: 285 KEPEARHW--MPGQGDWLVAWKYPPVAKVAEVTGVQFAVGKSGKISVVASLAPVMLDDKR 342

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    +                    DI  GD +LV  AG+ IP++              
Sbjct: 343 VKRVNV-----------GSVRRWEEWDIAPGDHILVSLAGQGIPRID------------- 378

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGL 486
                   +      RD     G    A  C      C  Q + RL    S++A  ++G+
Sbjct: 379 -------KVVWRSTQRDKPAPPGNRYNALTCFYATEVCQEQFIARLVWLGSKEALEVDGM 431

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+       +    A           L + Q  +T       GF       L+   N  R
Sbjct: 432 GEAGWRVLHQ----AHRFEHIFSWLALTQEQLQAT------PGFSKEKSKQLWHQFNLVR 481

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +    R++ ++GI      +            N  +    ++A   + W  L   P  G+
Sbjct: 482 HRPFIRWVMAMGIPLTQGALK----------ANGDRSWGQLLARTAEYWQQL---PTTGE 528

Query: 607 IIAQAIVEFYQNPRNICAVEALLK 630
             A+ ++++  NP        L  
Sbjct: 529 GRARRVIQWRDNPEIRALGNWLAA 552


>gi|157149264|ref|YP_001456583.1| NAD-dependent DNA ligase LigB [Citrobacter koseri ATCC BAA-895]
 gi|157086469|gb|ABV16147.1| hypothetical protein CKO_05104 [Citrobacter koseri ATCC BAA-895]
          Length = 576

 Score =  153 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 112/624 (17%), Positives = 221/624 (35%), Gaps = 93/624 (14%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
                S  +A  E++ L+Q+++  +D Y+Q     + DS YD L  +       F     
Sbjct: 37  ACPDWSPARANDEIARLQQQLAQWNDSYWQQGVSAVDDSVYDQLSAQLVQWQRCFGGDTG 96

Query: 68  SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127
           +E                   + H +P   + K+ + + +++++ +    W         
Sbjct: 97  AEL---------APPVSG--SLPHPVPHTGVRKLADKQAVQQWMRKRSDLW--------- 136

Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187
             ++PK+DG  +T+ Y  G+ V A  RG+G  GED +  +R IP +P+           +
Sbjct: 137 --VQPKVDGVAVTLVYRDGRLVSAISRGNGLKGEDWTQKVRLIPAVPQSTKGA-LANSTL 193

Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247
           +GE+++     L  N     +G     N R+  +G++ R N T   + L+ F+       
Sbjct: 194 QGEIFL-----LHDNHIQRQMGGM---NARSKVAGMMMRQNNTSSLQSLSVFIWAWPDGP 245

Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307
               +   ++           +  V+ A+    + + +       + LP+  DG+V +  
Sbjct: 246 ATMPERLRQLSGAGFGFAQQYSQPVKSADDVERVRTAWW-----TTGLPFVTDGVVVRTG 300

Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367
           +    +          W+++ K+        +  +   +G++G ++ VA L PV +    
Sbjct: 301 KEPEARHW--MPGQGDWLVAWKYPPVAKVAEVTGVQFAVGKSGKISVVASLAPVMLDDKR 358

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           +    +                    DI  GD +LV  AG+ IP++              
Sbjct: 359 VKRVNV-----------GSVRRWEEWDIAPGDHILVSLAGQGIPRID------------- 394

Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGL 486
                   +      RD     G    A  C      C  Q + RL    S++A  ++G+
Sbjct: 395 -------KVVWRSTQRDKPAPPGNRYNALTCFYATEVCQEQFIARLVWLGSKEALEVDGM 447

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+       +    A           L + Q  +T       GF       L+   N  R
Sbjct: 448 GEAGWRVLHQ----AHRFEHIFSWLALTQEQLQAT------PGFSKEKSKQLWHQFNLVR 497

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
           +    R++ ++GI      +            N  +    ++A   + W  L   P  G+
Sbjct: 498 HRPFIRWVMAMGIPLTQGALK----------ANGDRSWGQLLARTAEYWQQL---PTTGE 544

Query: 607 IIAQAIVEFYQNPRNICAVEALLK 630
             A+ ++++  NP        L  
Sbjct: 545 GRARRVIQWRDNPEIRALGNWLAA 568


>gi|1816524|gb|AAB42062.1| DNA ligase [Escherichia coli]
          Length = 90

 Score =  153 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +E   ++L+ L   + +H+  Y+    P I D+EYD L R    +    P+L     P+ 
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE 105
           P  ++G     +  ++ H +P LSL+ +++ E
Sbjct: 58  PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEE 89


>gi|306816005|ref|ZP_07450143.1| NAD-dependent DNA ligase LigB [Escherichia coli NC101]
 gi|305850401|gb|EFM50858.1| NAD-dependent DNA ligase LigB [Escherichia coli NC101]
          Length = 560

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 109/617 (17%), Positives = 198/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   LR ++      W          
Sbjct: 76  ---GNETRDVMMPPLAG--TVMHPVAHTGVRKLADKNALRLWMREHNDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV        
Sbjct: 179 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +       +               R       +    NE    ++ LP+  DG+V +  +
Sbjct: 231 LMT---DRLKDLATAGFTLTQTYTRAVKNTDEVAHVRNEW--WKAKLPFVTDGVVVRAAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|309800389|ref|ZP_07694554.1| DNA ligase [Streptococcus infantis SK1302]
 gi|308115980|gb|EFO53491.1| DNA ligase [Streptococcus infantis SK1302]
          Length = 240

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 28/259 (10%)

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P+ CP C S+++   +        A RC     C AQ  E L HF SRDA NI GLG   
Sbjct: 9   PTNCPSCDSKLLHFEDE------VALRCINPR-CPAQIKEGLTHFASRDAMNISGLGPSI 61

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           +   F     A  ++  ADI+ L             + G  + S   LY +I   +  S 
Sbjct: 62  VKKLF----AADLVKDVADIYHLTVEDL------LLLDGIKEKSAQKLYQAIQASKENSA 111

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIRHVG++ ++ L + + S ++ AQ           +   +  +  +G +IAQ
Sbjct: 112 EKLLFGLGIRHVGSKASQLLLQNFHSIESLAQA----------NPEEIASIESLGSVIAQ 161

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++  ++    +   +  L +       +      ++ +    +V TG L+++ R +A+  
Sbjct: 162 SLQTYFATEGSEILLRELKESGVNLDYKGQTVAANAALSGLTVVLTGKLERLNRSEAKNK 221

Query: 670 VTQLGAVVSAILSRKTDII 688
           +  LGA V+  +S+K  ++
Sbjct: 222 LESLGAKVTGSVSKKQTLL 240


>gi|293417108|ref|ZP_06659735.1| DNA ligase [Escherichia coli B185]
 gi|291431139|gb|EFF04132.1| DNA ligase [Escherichia coli B185]
          Length = 562

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 108/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 78  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV       +
Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 233 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N+ R 
Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNQARK 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI           A    S+                 W  L   P +G  
Sbjct: 485 QPFTRWVMAMGIPLTRVA---LNASDERSWSQLLVSTEQF-------WQQL---PGIGSG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 532 RARQVIEWKENAQIKKL 548


>gi|323934808|gb|EGB31190.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli E1520]
          Length = 560

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 108/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +    E+      L       V+ A+    + + + + +      P+  DG+V +  +
Sbjct: 231 LMSDRLKELATAGFTLTQRYTRAVKNADEVARVRNDWWKAEL-----PFVTDGVVVRAAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|167036006|ref|YP_001671237.1| NAD-dependent DNA ligase LigB [Pseudomonas putida GB-1]
 gi|189046591|sp|B0KLZ2|LIGB_PSEPG RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|166862494|gb|ABZ00902.1| DNA ligase (NAD(+)) [Pseudomonas putida GB-1]
          Length = 566

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 111/616 (18%), Positives = 210/616 (34%), Gaps = 95/616 (15%)

Query: 31  HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90
            D+ Y++    ++ D  YD  ++R   +   F  LA S  P          +  +   + 
Sbjct: 45  WDEHYHRQGIALVADELYDQSRQRLVHLQQCFG-LAPSPSP----------LTSARGPLP 93

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150
           H +P   ++K+ + + + +++                  ++PK DG   ++ Y +G+ V 
Sbjct: 94  HPVPHTGVDKLADRQAVARWMA-----------GKTGVWVQPKFDGVAASLIYRQGQLVQ 142

Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210
              RGDG  G D S  I  +  + R L   I   + ++GE+Y+  N+            +
Sbjct: 143 LISRGDGLQGHDWSRHIPQLGAVTRQLPQAI--DLHLQGELYLRLNE--------HVQAK 192

Query: 211 KPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270
              AN R   +G+L R   T                     + Q + L ++  LGFP + 
Sbjct: 193 AGSANARGTVAGLLARKQLTREQGNTIGLF---VWGWPHGPERQADRLAQLAQLGFPDSQ 249

Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
               A       + + E    RS LP+  DG++ ++           +A++P W+ + K+
Sbjct: 250 HYSIAVDTLEDAARWREH-WYRSPLPFASDGVILRLGSR--PPAERWQAKAPYWIAAWKY 306

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390
              QA   + D+  ++GRTG +TP+A ++PV +    IT  +L                 
Sbjct: 307 PYVQALAEVRDVRFRVGRTGRITPIAHVQPVTLDDRRITQVSL-----------GSLARW 355

Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450
              DIR GD+V +  AG  IP++  ++                         + L     
Sbjct: 356 QALDIRPGDQVAISLAGLTIPRLEHVVHRAVE-------------------RQPLGAPAP 396

Query: 451 KLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509
               A  C      C  Q + RL     +    +   G             A  +    D
Sbjct: 397 GRHHALSCWQPSEGCEEQFIARLTWLSGKQGLALPRTGPGTWRRLVD----AGLVTSMTD 452

Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569
              L   +         + G   ++   L  S ++ R+   ++++  LG           
Sbjct: 453 WLQLDAERLQ------QVPGISSLTAAQLLGSFDQARSRPFDQWLRGLGAP--------- 497

Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
           + K+        Q         +        VP +G   ++ +V F+           L 
Sbjct: 498 IGKH-------LQLTGGWQEMASRSAGQWQTVPDIGVKRSRQLVGFFAAAEVQAIATRLA 550

Query: 630 KEVSPSIGRHEKNVSS 645
           +          + +  
Sbjct: 551 ESGIEGFSPPPERIEQ 566


>gi|300898582|ref|ZP_07116912.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 198-1]
 gi|300357745|gb|EFJ73615.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 198-1]
          Length = 561

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 112/617 (18%), Positives = 208/617 (33%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F     +
Sbjct: 23  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF----GN 78

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           E P+     +          V H +    + K+ +   L  ++      W          
Sbjct: 79  ETPD-----VMMPPLNG--AVIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 180 GEIFLKREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 232 LMTDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWKAKL-----PFVTDGVVVRAAK 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKTIQFAVGKSGKISVVASLAPVMLDDKKV 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 434 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLLSTEQF-------WQQL---PGTGSG 530

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 531 RARQVIEWKENAQIKKL 547


>gi|218707281|ref|YP_002414800.1| NAD-dependent DNA ligase LigB [Escherichia coli UMN026]
 gi|293407270|ref|ZP_06651194.1| DNA ligase B [Escherichia coli FVEC1412]
 gi|298383016|ref|ZP_06992611.1| DNA ligase [Escherichia coli FVEC1302]
 gi|226737618|sp|B7NEV1|LIGB_ECOLU RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|218434378|emb|CAR15303.1| DNA ligase, NAD(+)-dependent [Escherichia coli UMN026]
 gi|291426081|gb|EFE99115.1| DNA ligase B [Escherichia coli FVEC1412]
 gi|298276852|gb|EFI18370.1| DNA ligase [Escherichia coli FVEC1302]
          Length = 560

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 112/617 (18%), Positives = 208/617 (33%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F     +
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF----GN 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           E P+     +          V H +    + K+ +   L  ++      W          
Sbjct: 78  ETPD-----VMMPPLNG--AVIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLKREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWKAKL-----PFVTDGVVVRAAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKTIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLLSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|330903436|gb|EGH34008.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 130

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 4/124 (3%)

Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQ 662
              QA+ +F+ +  N     A+EA LK+        +K V    +  +  V TG+L+++ 
Sbjct: 7   ETGQAVCDFFDDSANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQTWVLTGSLERMS 66

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L  L +  
Sbjct: 67  RDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRLTELG 126

Query: 723 TTLR 726
             + 
Sbjct: 127 VAVD 130


>gi|312948208|gb|ADR29035.1| NAD-dependent DNA ligase LigB [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 560

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 110/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---GNETRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV        
Sbjct: 179 GEIFLQRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      ++      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    I
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKI 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|227883837|ref|ZP_04001642.1| NAD-dependent DNA ligase LigB [Escherichia coli 83972]
 gi|300984900|ref|ZP_07177188.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 45-1]
 gi|301047437|ref|ZP_07194516.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 185-1]
 gi|227839115|gb|EEJ49581.1| NAD-dependent DNA ligase LigB [Escherichia coli 83972]
 gi|300300645|gb|EFJ57030.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 185-1]
 gi|300408329|gb|EFJ91867.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 45-1]
 gi|307555765|gb|ADN48540.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli ABU 83972]
 gi|315292916|gb|EFU52268.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 153-1]
          Length = 561

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 110/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 23  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 76

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 77  ---GNETRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV        
Sbjct: 180 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      ++      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 232 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    I
Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKI 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 434 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 530

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 531 RARQVIEWKENAQIKKL 547


>gi|166226372|sp|Q8FC83|LIGB_ECOL6 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 560

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 110/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---GNETRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV        
Sbjct: 179 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      ++      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    I
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKI 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|26250293|ref|NP_756333.1| NAD-dependent DNA ligase LigB [Escherichia coli CFT073]
 gi|26110723|gb|AAN82907.1|AE016769_22 Hypothetical DNA ligase-like protein yicF [Escherichia coli CFT073]
          Length = 562

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 110/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 78  ---GNETRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV        
Sbjct: 181 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      ++      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 233 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    I
Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKI 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 532 RARQVIEWKENAQIKKL 548


>gi|324111541|gb|EGC05522.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia fergusonii B253]
          Length = 561

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 102/619 (16%), Positives = 208/619 (33%), Gaps = 93/619 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E+S L+ ++    D Y++  K  + D  YD L  R       F      ++ + 
Sbjct: 27  PARANEEISRLQLQLKQWSDTYWKEGKSKVEDHVYDQLSARLAQWQRCF-----GDNADS 81

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
                          V H +    + K+ +   L++++      W           ++PK
Sbjct: 82  ETMM---PPISG--TVMHPVAHTGVRKLADKNALQQWMRARRDVW-----------VQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y  GK   A  RG+G  GED +  +R IP++P+ +S  +     ++GE+Y+
Sbjct: 126 VDGVAVTLVYRDGKLNQAISRGNGLKGEDWTQRLRLIPSVPQNVSGPLSN-STLQGEIYL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +              +    N R+  +G++ R   TD    L  F+       +     
Sbjct: 185 QREG--------HIQQQMGGMNARSKVAGMMMRHGNTDTLNSLGVFIWAWPDGPQSMP-- 234

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
              +               R+ N+   +    +E    ++ LP+  DG+V +V +    +
Sbjct: 235 -ERLQILTAAGFILTQQYTREVNSAREVEQVRSEW--WKTKLPFVTDGVVVRVGKEPDSR 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+        +  I   +G++G +  VA L P+ +    +    +
Sbjct: 292 HWQPGQGD--WLAAWKYPPIAQVAEVNAIHFTVGKSGKIAVVASLAPIKLDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++                    
Sbjct: 350 -----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID------------------- 379

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
             +      R           +  C      C  Q + RL    S+    ++G+G+    
Sbjct: 380 -NVVWRGTERTKPTPPENRFNSLTCYFASDVCREQFISRLVWLGSKQVLGLDGIGEAGWR 438

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              ++               L   Q  ST       G        L    +  +     R
Sbjct: 439 ALHQTHRFE----HIFSWLLLTPEQIQST------PGIAKSKSEQLRHQFHLAKKQPFTR 488

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           ++ ++GI       A   +  + S+Q    +                ++P  G   A  +
Sbjct: 489 WLMAMGI---PLTQAALKSHPFDSWQQVMSQTK----------QEWQQLPGTGSRRASQV 535

Query: 613 VEFYQNPRNICAVEALLKE 631
           +++ ++  +I  + + +  
Sbjct: 536 IKW-RDDSDISVLSSWMSA 553


>gi|331644366|ref|ZP_08345495.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli H736]
 gi|331655280|ref|ZP_08356279.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli M718]
 gi|331036660|gb|EGI08886.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli H736]
 gi|331047295|gb|EGI19373.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli M718]
          Length = 562

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 108/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 78  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +    E+      L       V+ A+    + + + + +      P+  DG+V +  +
Sbjct: 233 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 532 RARQVIEWKENAQIKKL 548


>gi|300950021|ref|ZP_07163971.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 116-1]
 gi|300955364|ref|ZP_07167743.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 175-1]
 gi|301644314|ref|ZP_07244316.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 146-1]
 gi|300317736|gb|EFJ67520.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 175-1]
 gi|300450635|gb|EFK14255.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 116-1]
 gi|301077352|gb|EFK92158.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 146-1]
          Length = 561

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 108/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 23  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 76

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 77  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 180 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +    E+      L       V+ A+    + + + + +      P+  DG+V +  +
Sbjct: 232 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 434 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 530

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 531 RARQVIEWKENAQIKKL 547


>gi|256025622|ref|ZP_05439487.1| NAD-dependent DNA ligase LigB [Escherichia sp. 4_1_40B]
 gi|307140346|ref|ZP_07499702.1| NAD-dependent DNA ligase LigB [Escherichia coli H736]
 gi|315618649|gb|EFU99235.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli 3431]
          Length = 560

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 108/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +    E+      L       V+ A+    + + + + +      P+  DG+V +  +
Sbjct: 231 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|331649461|ref|ZP_08350547.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli M605]
 gi|331041959|gb|EGI14103.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli M605]
          Length = 562

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 109/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 78  ---GNETRDVMIPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV        
Sbjct: 181 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      ++      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 233 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 532 RARQVIEWKENAQIKKL 548


>gi|330909708|gb|EGH38222.1| DNA ligase , LigB [Escherichia coli AA86]
          Length = 560

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 109/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---GNETRDVMIPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV        
Sbjct: 179 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      ++      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|218697368|ref|YP_002405035.1| NAD-dependent DNA ligase LigB [Escherichia coli 55989]
 gi|300923458|ref|ZP_07139498.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 182-1]
 gi|301325330|ref|ZP_07218837.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 78-1]
 gi|307314268|ref|ZP_07593876.1| DNA ligase (NAD(+)) [Escherichia coli W]
 gi|254809144|sp|B7L771|LIGB_ECO55 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|218354100|emb|CAV00658.1| DNA ligase, NAD(+)-dependent [Escherichia coli 55989]
 gi|300420285|gb|EFK03596.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 182-1]
 gi|300847857|gb|EFK75617.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 78-1]
 gi|306906091|gb|EFN36610.1| DNA ligase (NAD(+)) [Escherichia coli W]
 gi|315062935|gb|ADT77262.1| DNA ligase, NAD(+)-dependent [Escherichia coli W]
 gi|323376472|gb|ADX48740.1| DNA ligase (NAD(+)) [Escherichia coli KO11]
 gi|324116014|gb|EGC09940.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli E1167]
          Length = 560

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 109/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|300815113|ref|ZP_07095338.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 107-1]
 gi|300532005|gb|EFK53067.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 107-1]
          Length = 560

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 109/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWEEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|300822417|ref|ZP_07102557.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 119-7]
 gi|309797611|ref|ZP_07691999.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 145-7]
 gi|300525064|gb|EFK46133.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 119-7]
 gi|308118798|gb|EFO56060.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 145-7]
          Length = 561

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 109/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 23  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 76

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 77  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 180 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 232 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 434 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 530

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 531 RARQVIEWKENAQIKKL 547


>gi|171855259|sp|A7ZTJ9|LIGB_ECO24 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 560

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 109/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|157158891|ref|YP_001465128.1| NAD-dependent DNA ligase LigB [Escherichia coli E24377A]
 gi|331670488|ref|ZP_08371327.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA271]
 gi|331679739|ref|ZP_08380409.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli H591]
 gi|157080921|gb|ABV20629.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E24377A]
 gi|331062550|gb|EGI34470.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA271]
 gi|331072911|gb|EGI44236.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli H591]
          Length = 562

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 109/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 78  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 233 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 532 RARQVIEWKENAQIKKL 548


>gi|284923709|emb|CBG36806.1| putative DNA ligase [Escherichia coli 042]
          Length = 560

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 110/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---GNETRDVMMPPLNG--AVIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLKREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRAAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVVEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLLSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|323975134|gb|EGB70239.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli TW10509]
          Length = 560

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 115/617 (18%), Positives = 209/617 (33%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  +  I D  YD L  R       F + +R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNESRD 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                               V H +    + K+ +   LR ++      W          
Sbjct: 82  AMM---------PPLAG--TVMHPVAHTGVRKLADKNALRLWMREHNDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  IP++P+ +S  +     ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLIPSVPQTVSGPLVN-STLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R+  +G+L R   +D    L  FV      ++
Sbjct: 179 GEIFLKREG--------HIQQQMGGINARSKVAGLLMRQGNSDTLNSLGVFVWAWPDGTQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +       + Q             R  N    +    NE    ++ LP+  DG+V +  +
Sbjct: 231 LMT---DRLQQLTTAGFTLTQMYTRAVNNADEVERIRNEW--WKAKLPFVTDGVVVRAAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNV-----------GSVRRWQEWDIAPGDKILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------NVVWRGTERTKPTPPENRFNSLTCYFASDVCREQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G      T L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSTQLWHQFNLARK 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|301028426|ref|ZP_07191672.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 196-1]
 gi|299878537|gb|EFI86748.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 196-1]
          Length = 560

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 108/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLWG--------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
             +PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 122 --QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +    E+      L       V+ A+    + + + + +      P+  DG+V +  +
Sbjct: 231 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|293413081|ref|ZP_06655749.1| DNA ligase [Escherichia coli B354]
 gi|291468728|gb|EFF11221.1| DNA ligase [Escherichia coli B354]
          Length = 561

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 115/617 (18%), Positives = 211/617 (34%), Gaps = 92/617 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +    
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGEETHR 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN  G         V H +    + K+ +   L  ++      W          
Sbjct: 82  DAMMPPLN--GA--------VIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L+ FV       +
Sbjct: 180 GEIFLKREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLDVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 232 LMTDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWKAKL-----PFVTDGVVVRAAK 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVVEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+  F ++G+G
Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVFGLDGIG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++             F L   Q  +T       G        L+   N  R 
Sbjct: 434 EAGWRALHQTHRFE----HIFSWFLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI           A    S+                 W  L   P  G  
Sbjct: 484 QPFTRWVMAMGIPLTRVA---LNASDERSWSQLLLSTEQF-------WQQL---PGTGSG 530

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 531 RARQVIEWKENAQIKKL 547


>gi|191170589|ref|ZP_03032142.1| NAD-dependent DNA ligase adenylation domain [Escherichia coli F11]
 gi|190909397|gb|EDV68983.1| NAD-dependent DNA ligase adenylation domain [Escherichia coli F11]
          Length = 562

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 110/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  +  I D  YD L  R       F +  R 
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNEPRD 83

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                               V H +    + K+ +   LR ++      W          
Sbjct: 84  AMM---------PPLAG--TVMHPVAHTGVRKLADKNALRLWMREHNDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV        
Sbjct: 181 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      ++      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 233 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 532 RARQVIEWKENAQIKKL 548


>gi|110643888|ref|YP_671618.1| NAD-dependent DNA ligase LigB [Escherichia coli 536]
 gi|300983472|ref|ZP_07176619.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 200-1]
 gi|110345480|gb|ABG71717.1| hypothetical DNA ligase-like protein YicF [Escherichia coli 536]
 gi|300306936|gb|EFJ61456.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 200-1]
 gi|324012718|gb|EGB81937.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 60-1]
          Length = 561

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 110/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  +  I D  YD L  R       F +  R 
Sbjct: 23  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNEPRD 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                               V H +    + K+ +   LR ++      W          
Sbjct: 83  AMM---------PPLAG--TVMHPVAHTGVRKLADKNALRLWMREHNDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV        
Sbjct: 180 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      ++      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 232 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 434 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 530

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 531 RARQVIEWKENAQIKKL 547


>gi|166226371|sp|Q0TBG2|LIGB_ECOL5 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 560

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 110/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  +  I D  YD L  R       F +  R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNEPRD 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                               V H +    + K+ +   LR ++      W          
Sbjct: 82  AMM---------PPLAG--TVMHPVAHTGVRKLADKNALRLWMREHNDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV        
Sbjct: 179 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      ++      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|218691930|ref|YP_002400142.1| NAD-dependent DNA ligase LigB [Escherichia coli ED1a]
 gi|254809145|sp|B7N287|LIGB_ECO81 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|218429494|emb|CAR10458.2| DNA ligase, NAD(+)-dependent [Escherichia coli ED1a]
          Length = 560

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 109/617 (17%), Positives = 207/617 (33%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---GNETRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV        
Sbjct: 179 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      ++      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    I
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKI 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI          L +  L+  +  +  + ++      W  L   P  G  
Sbjct: 483 QPFTRWVMAMGIP---------LTRAALNASD-ERSWSQLLFSKEQFWQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|213620585|ref|ZP_03373368.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 82

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 50/80 (62%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
            +  + + + S    K +V TG+L ++ R  A+  +  LGA V+  +S+KTD++I G+  
Sbjct: 3   PVVINAQEIDSPFAGKTVVLTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAA 62

Query: 695 GSKLEKAQQLGVKIMNEEQF 714
           GSKL KAQ+LG+ +++E + 
Sbjct: 63  GSKLAKAQELGITVIDEAEM 82


>gi|293463971|ref|ZP_06664385.1| DNA ligase B [Escherichia coli B088]
 gi|291321603|gb|EFE61039.1| DNA ligase B [Escherichia coli B088]
          Length = 562

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 108/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 78  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +    E+      L       V+ A+    + + + + +      P+  DG+V +  +
Sbjct: 233 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRGAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 532 RARQVIEWKENAQIKKL 548


>gi|218556210|ref|YP_002389123.1| NAD-dependent DNA ligase LigB [Escherichia coli IAI1]
 gi|226737616|sp|B7M4D2|LIGB_ECO8A RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|218362978|emb|CAR00615.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI1]
          Length = 560

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 108/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +    E+      L       V+ A+    + + + + +      P+  DG+V +  +
Sbjct: 231 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRGAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|331675125|ref|ZP_08375882.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA280]
 gi|331068034|gb|EGI39432.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA280]
          Length = 562

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 109/616 (17%), Positives = 206/616 (33%), Gaps = 91/616 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 78  ---GNETRDVMMPPLNG--AVIHPVAHTGVRKMADEIALSLWMRECSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLKREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG++ +  +
Sbjct: 233 LMTDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVIVRAAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ KF        +  I   +G++G ++ VA L PV +    +
Sbjct: 288 EPESRHW--LPGQAEWLVAWKFQPVAQVVEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++ D++           
Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAE------ 388

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
                             P   +  +         C  Q + RL    S+    ++G+G+
Sbjct: 389 -------------RAKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIGE 435

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                  ++               L   Q  +T       G        ++   N  R  
Sbjct: 436 AGWRALHQTHRFE----HIFSWLLLTTEQLQNT------PGIAKSKSAQIWHQFNLARKQ 485

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              R++ ++GI       A   A    S+                 W  L   P  G   
Sbjct: 486 PFTRWVMAMGI---PLTRAALNASDERSWSQLLLSTEQF-------WQQL---PGTGSGR 532

Query: 609 AQAIVEFYQNPRNICA 624
           A+ ++E+ +N +    
Sbjct: 533 ARQVIEWKENAQIKKL 548


>gi|260857958|ref|YP_003231849.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O26:H11 str.
           11368]
 gi|260870377|ref|YP_003236779.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O111:H- str.
           11128]
 gi|257756607|dbj|BAI28109.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O26:H11 str.
           11368]
 gi|257766733|dbj|BAI38228.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O111:H- str.
           11128]
          Length = 560

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 109/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|323965913|gb|EGB61361.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli M863]
          Length = 562

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 114/617 (18%), Positives = 208/617 (33%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  +  I D  YD L  R       F + +R 
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNESRD 83

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                               V H +    + K+ +   LR ++      W          
Sbjct: 84  AMM---------PPLAG--TVMHPVAHTGVRKLADKNALRLWMREHNDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  IP++P+ +S  +     ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLIPSVPQTVSGPLVN-STLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R+  +G+L R   +D    L  FV      ++
Sbjct: 181 GEIFLKREG--------HIQQQMGGINARSKVAGLLMRQGNSDTLNSLGVFVWAWPDGTQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +       + Q             R  N    +    NE    ++ LP+  DG+V +  +
Sbjct: 233 LMT---DRLQQLTTAGFTLTQTYTRAVNNADEVERIRNEW--WKAKLPFVTDGVVVRAAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 381 ------NVVWRGTERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 532 RARQVIEWKENAQIKKL 548


>gi|315296990|gb|EFU56270.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 16-3]
          Length = 561

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 110/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 23  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 76

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 77  ---GNETRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV       +
Sbjct: 180 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 232 LMTDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWKTKL-----PFVTDGVVVRAAK 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 434 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGSAKSKSAQLWHQFNLARK 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLLSTEQF-------WQQL---PGTGSG 530

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 531 RARQVIEWKENAQIKKL 547


>gi|331659983|ref|ZP_08360921.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA206]
 gi|331053198|gb|EGI25231.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA206]
          Length = 560

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 110/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---GNETRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV       +
Sbjct: 179 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWKTKL-----PFVTDGVVVRAAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGSAKSKSAQLWHQFNLARK 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLLSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|161367494|ref|NP_290227.2| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EDL933]
          Length = 560

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 108/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRXAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+       ++  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|12518406|gb|AAG58791.1|AE005592_2 putative enzyme [Escherichia coli O157:H7 str. EDL933]
          Length = 562

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 108/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 24  CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 78  ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 233 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRXAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+       ++  I   +G++G ++ VA L PV +    +
Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 532 RARQVIEWKENAQIKKL 548


>gi|300927922|ref|ZP_07143481.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 187-1]
 gi|300464014|gb|EFK27507.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 187-1]
          Length = 561

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 106/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 23  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 76

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 77  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 180 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +    E+      L       V+ A+    + + + + +      P+  DG+V +  +
Sbjct: 232 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + R+    ++    ++G+G
Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRVVWLGAKQVLGLDGIG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 434 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 530

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 531 RARQVIEWKENAQIKKL 547


>gi|301018976|ref|ZP_07183199.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 69-1]
 gi|300399470|gb|EFJ83008.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 69-1]
          Length = 561

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 109/617 (17%), Positives = 201/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 23  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGIYDQLSARLTQWQRCF------ 76

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 77  ---GNETRDVMMPPLNG--AVIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+  S        ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTASGP-LANSTLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 180 GEIFLKREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +   
Sbjct: 232 LMTDRLKELTTAGFTLTQTYTRAVKNADEVARVRNAWWKAKL-----PFVTDGVVVRAA- 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 -KEPESRYWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 434 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI           A    S+                 W  L   P  G  
Sbjct: 484 QPFTRWVMAMGIPLTRVA---LNASDERSWSQLLLSTEQF-------WQQL---PGTGSG 530

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 531 RARQVIEWKENAQIKKL 547


>gi|315285425|gb|EFU44870.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 110-3]
 gi|324008103|gb|EGB77322.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 57-2]
          Length = 561

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 107/617 (17%), Positives = 200/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 23  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 76

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 77  ---GNETRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV        
Sbjct: 180 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      ++      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 232 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 434 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                        P  G  
Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQFWQQQ----------PGTGSG 530

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 531 RARQVIEWKENAQIKKL 547


>gi|218560719|ref|YP_002393632.1| NAD-dependent DNA ligase LigB [Escherichia coli S88]
 gi|166226370|sp|A1AHH8|LIGB_ECOK1 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|166226373|sp|Q1R4U5|LIGB_ECOUT RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|226737614|sp|B7MFK8|LIGB_ECO45 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|218367488|emb|CAR05270.1| DNA ligase, NAD(+)-dependent [Escherichia coli S88]
 gi|307628720|gb|ADN73024.1| NAD-dependent DNA ligase LigB [Escherichia coli UM146]
          Length = 560

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 107/617 (17%), Positives = 200/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---GNETRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV        
Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      ++      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                        P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQFWQQQ----------PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|91213164|ref|YP_543150.1| NAD-dependent DNA ligase LigB [Escherichia coli UTI89]
 gi|117625919|ref|YP_859242.1| NAD-dependent DNA ligase LigB [Escherichia coli APEC O1]
 gi|237703441|ref|ZP_04533922.1| NAD-dependent DNA ligase LigB [Escherichia sp. 3_2_53FAA]
 gi|91074738|gb|ABE09619.1| hypothetical DNA ligase-like protein YicF [Escherichia coli UTI89]
 gi|115515043|gb|ABJ03118.1| NAD-dependent DNA ligase [Escherichia coli APEC O1]
 gi|226902705|gb|EEH88964.1| NAD-dependent DNA ligase LigB [Escherichia sp. 3_2_53FAA]
 gi|294489423|gb|ADE88179.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli IHE3034]
 gi|323949886|gb|EGB45770.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli H252]
 gi|323954950|gb|EGB50729.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli H263]
          Length = 562

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 107/617 (17%), Positives = 200/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 78  ---GNETRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV        
Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPH 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      ++      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 233 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                        P  G  
Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQFWQQQ----------PGTGSG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 532 RARQVIEWKENAQIKKL 548


>gi|194435653|ref|ZP_03067756.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli 101-1]
 gi|194425196|gb|EDX41180.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli 101-1]
          Length = 562

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 107/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 78  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +    E+      L       V+ A+    + + + + +      P+  DG+V +  +
Sbjct: 233 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    ++    ++G+G
Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLDGIG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 532 RARQVIEWKENAQIKKL 548


>gi|170018123|ref|YP_001723077.1| NAD-dependent DNA ligase LigB [Escherichia coli ATCC 8739]
 gi|253771511|ref|YP_003034342.1| NAD-dependent DNA ligase LigB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163575|ref|YP_003046683.1| NAD-dependent DNA ligase LigB [Escherichia coli B str. REL606]
 gi|312972067|ref|ZP_07786241.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli 1827-70]
 gi|189046590|sp|B1IYV3|LIGB_ECOLC RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|169753051|gb|ACA75750.1| DNA ligase (NAD(+)) [Escherichia coli ATCC 8739]
 gi|242379171|emb|CAQ33973.1| DNA ligase [Escherichia coli BL21(DE3)]
 gi|253322555|gb|ACT27157.1| DNA ligase (NAD(+)) [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975476|gb|ACT41147.1| NAD-dependent DNA ligase LigB [Escherichia coli B str. REL606]
 gi|253979632|gb|ACT45302.1| NAD-dependent DNA ligase LigB [Escherichia coli BL21(DE3)]
 gi|310334444|gb|EFQ00649.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli 1827-70]
 gi|323959895|gb|EGB55543.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli H489]
 gi|323971289|gb|EGB66534.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli TA007]
          Length = 560

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 107/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +    E+      L       V+ A+    + + + + +      P+  DG+V +  +
Sbjct: 231 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    ++    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|300919785|ref|ZP_07136260.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 115-1]
 gi|300413138|gb|EFJ96448.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 115-1]
          Length = 561

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 107/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 23  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 76

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 77  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 180 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +    E+      L       V+ A+    + + + + +      P+  DG+V +  +
Sbjct: 232 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    ++    ++G+G
Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLDGIG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 434 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 530

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 531 RARQVIEWKENAQIKKL 547


>gi|89110365|ref|AP_004145.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111628|ref|NP_418104.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           MG1655]
 gi|170083154|ref|YP_001732474.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238902738|ref|YP_002928534.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952]
 gi|401583|sp|P25772|LIGB_ECOLI RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|226737617|sp|B1X980|LIGB_ECODH RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|259494925|sp|C4ZXN9|LIGB_ECOBW RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|85676396|dbj|BAE77646.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K12 substr.
           W3110]
 gi|87082305|gb|AAC76671.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           MG1655]
 gi|169890989|gb|ACB04696.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238860823|gb|ACR62821.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952]
 gi|260447334|gb|ACX37756.1| DNA ligase (NAD(+)) [Escherichia coli DH1]
 gi|309704049|emb|CBJ03395.1| putative DNA ligase [Escherichia coli ETEC H10407]
 gi|315138229|dbj|BAJ45388.1| NAD-dependent DNA ligase LigB [Escherichia coli DH1]
 gi|332345636|gb|AEE58970.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 560

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 107/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +    E+      L       V+ A+    + + + + +      P+  DG+V +  +
Sbjct: 231 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    ++    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|254038848|ref|ZP_04872900.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|290497|gb|AAA62000.1| f562 [Escherichia coli]
 gi|226838813|gb|EEH70840.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
          Length = 562

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 107/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 78  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +    E+      L       V+ A+    + + + + +      P+  DG+V +  +
Sbjct: 233 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    ++    ++G+G
Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLDGIG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 532 RARQVIEWKENAQIKKL 548


>gi|193063789|ref|ZP_03044876.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E22]
 gi|192930504|gb|EDV83111.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E22]
          Length = 577

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 109/616 (17%), Positives = 204/616 (33%), Gaps = 91/616 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 39  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 92

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 93  ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 137

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 138 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 195

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 196 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 247

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 248 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 302

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 303 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 360

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++ D++           
Sbjct: 361 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAE------ 403

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
                             P   +  +         C  Q + RL    S+    ++G+G+
Sbjct: 404 -------------RTKPTPPENRFNSLTCYFASEVCQEQFISRLVWLGSKQVLGLDGIGE 450

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                  ++               L   Q  +T       G        L+   N  R  
Sbjct: 451 AGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARKQ 500

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              R++ ++GI       A   A    S+                 W  L   P  G   
Sbjct: 501 PFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSGR 547

Query: 609 AQAIVEFYQNPRNICA 624
           A+ + E+ +N +    
Sbjct: 548 ARQVTEWKENAQIKKL 563


>gi|172044492|sp|A8A6A9|LIGB_ECOHS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 560

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 107/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDVYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +    E+      L       V+ A+    + + + + +      P+  DG+V +  +
Sbjct: 231 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    ++    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|157163128|ref|YP_001460446.1| NAD-dependent DNA ligase LigB [Escherichia coli HS]
 gi|157068808|gb|ABV08063.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli HS]
          Length = 562

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 107/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDVYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 78  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +    E+      L       V+ A+    + + + + +      P+  DG+V +  +
Sbjct: 233 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    ++    ++G+G
Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLDGIG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 532 RARQVIEWKENAQIKKL 548


>gi|332282582|ref|ZP_08394995.1| NAD-dependent DNA ligase LigB [Shigella sp. D9]
 gi|323944100|gb|EGB40180.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli H120]
 gi|332104934|gb|EGJ08280.1| NAD-dependent DNA ligase LigB [Shigella sp. D9]
          Length = 562

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 108/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 24  CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 78  ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 233 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 532 RARQVIEWKENAQIKKL 548


>gi|256021349|ref|ZP_05435214.1| NAD-dependent DNA ligase LigB [Shigella sp. D9]
          Length = 560

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 108/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|193070347|ref|ZP_03051289.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E110019]
 gi|192956286|gb|EDV86747.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E110019]
          Length = 577

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 108/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 39  CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 92

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 93  ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 137

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 138 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 195

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 196 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 247

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 248 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 302

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 303 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 360

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 361 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 395

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 396 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 449

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 450 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 499

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 500 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 546

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 547 RARQVIEWKENAQIKKL 563


>gi|187775663|ref|ZP_02992667.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4196]
 gi|188024760|ref|ZP_02997228.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4113]
 gi|189010103|ref|ZP_02804810.2| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189401811|ref|ZP_03006485.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189402714|ref|ZP_03006814.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189403713|ref|ZP_03007195.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4501]
 gi|189404723|ref|ZP_02810531.2| NAD-dependent DNA ligase adenylation domain [Escherichia coli
           O157:H7 str. EC869]
 gi|189405711|ref|ZP_03007918.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC508]
 gi|208809321|ref|ZP_03251658.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814147|ref|ZP_03255476.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820627|ref|ZP_03260947.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397991|ref|YP_002273126.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325818|ref|ZP_03441902.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           TW14588]
 gi|187771517|gb|EDU35361.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016999|gb|EDU55121.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4113]
 gi|189002376|gb|EDU71362.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358909|gb|EDU77328.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364410|gb|EDU82829.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369721|gb|EDU88137.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374635|gb|EDU93051.1| NAD-dependent DNA ligase adenylation domain [Escherichia coli
           O157:H7 str. EC869]
 gi|189378779|gb|EDU97195.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC508]
 gi|208729122|gb|EDZ78723.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735424|gb|EDZ84111.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740750|gb|EDZ88432.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159391|gb|ACI36824.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4115]
 gi|217322039|gb|EEC30463.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           TW14588]
          Length = 577

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 108/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 39  CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 92

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 93  ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 137

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 138 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 195

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 196 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 247

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 248 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 302

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+       ++  I   +G++G ++ VA L PV +    +
Sbjct: 303 EPESRHW--LPGQAEWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKKV 360

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 361 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 395

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 396 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 449

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 450 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 499

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 500 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 546

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 547 RARQVIEWKENAQIKKL 563


>gi|38704188|ref|NP_312549.2| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. Sakai]
 gi|195936208|ref|ZP_03081590.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           EC4024]
 gi|254795602|ref|YP_003080439.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224170|ref|ZP_05938451.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254780|ref|ZP_05947313.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           FRIK966]
 gi|166226377|sp|Q8XD89|LIGB_ECO57 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|257096607|sp|B5YWE6|LIGB_ECO5E RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|254595002|gb|ACT74363.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
           TW14359]
 gi|320639554|gb|EFX09162.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. G5101]
 gi|326337353|gb|EGD61188.1| DNA ligase , LigB [Escherichia coli O157:H7 str. 1044]
          Length = 560

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 108/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+       ++  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|13363997|dbj|BAB37945.1| putative enzyme [Escherichia coli O157:H7 str. Sakai]
 gi|209754570|gb|ACI75592.1| putative enzyme [Escherichia coli]
 gi|209754572|gb|ACI75593.1| putative enzyme [Escherichia coli]
 gi|209754576|gb|ACI75595.1| putative enzyme [Escherichia coli]
          Length = 562

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 108/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 24  CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 78  ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 233 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+       ++  I   +G++G ++ VA L PV +    +
Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 532 RARQVIEWKENAQIKKL 548


>gi|260846568|ref|YP_003224346.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O103:H2 str.
           12009]
 gi|257761715|dbj|BAI33212.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O103:H2 str.
           12009]
          Length = 560

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 109/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ + E+ +N +    
Sbjct: 530 RARQVTEWKENAQIKKL 546


>gi|194430072|ref|ZP_03062577.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B171]
 gi|194411899|gb|EDX28216.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B171]
          Length = 577

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 109/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 39  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 92

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 93  ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 137

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 138 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 195

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 196 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 247

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 248 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 302

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 303 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 360

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 361 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 395

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 396 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 449

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 450 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 499

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 500 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 546

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ + E+ +N +    
Sbjct: 547 RARQVTEWKENAQIKKL 563


>gi|291285018|ref|YP_003501836.1| DNA ligase B [Escherichia coli O55:H7 str. CB9615]
 gi|290764891|gb|ADD58852.1| DNA ligase B [Escherichia coli O55:H7 str. CB9615]
 gi|320644993|gb|EFX14023.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H- str.
           493-89]
 gi|320650260|gb|EFX18749.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H- str. H
           2687]
 gi|320655612|gb|EFX23540.1| NAD-dependent DNA ligase LigB [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320661346|gb|EFX28770.1| NAD-dependent DNA ligase LigB [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666360|gb|EFX33359.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 560

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 108/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|209754568|gb|ACI75591.1| putative enzyme [Escherichia coli]
 gi|209754574|gb|ACI75594.1| putative enzyme [Escherichia coli]
          Length = 562

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 108/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+  L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 24  CPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 78  ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 233 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 532 RARQVIEWKENAQIKKL 548


>gi|289669579|ref|ZP_06490654.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 511

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 6/149 (4%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLV-GDIIAQAIVEFYQNPRNICAVEAL---LKEVS 633
           Q  A  +++  A       +L +   V   ++A A++++   P N     A    ++ V 
Sbjct: 362 QQLAAAVDSFAALRTAGADALQQ-AGVPAPVVA-ALLQWLDRPENAALASAAQQAMETVL 419

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
             +   +   +  ++ + +V TGTL  + R  A++ +  LGA V+  +S+KT  ++ G+ 
Sbjct: 420 ARLPEADALQTGPLDGQSVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEE 479

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            GSKL+KAQ LGV I +E + L  L ++ 
Sbjct: 480 AGSKLDKAQSLGVDIWDEARLLAFLSEHG 508



 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 105/362 (29%), Positives = 163/362 (45%), Gaps = 82/362 (22%)

Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395
            T +  I+IQIGRTG  TPVARL+PV++ G ++TNATLHN D I  L           D+
Sbjct: 1   MTVVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQIARL-----------DV 49

Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455
           RVGD V+V+RAG+VIP+V  ++ ++R P  Q +  P+ CP+C S +VR+         A 
Sbjct: 50  RVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSEIVREEG------QAV 103

Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL-------------DFFFKSEDPAF 502
            RC+G L C AQ+ E  +HFVSR A +++GLG++ +             D +  + D   
Sbjct: 104 WRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVQGVADIYLLTVDQLL 163

Query: 503 SIRIPADIFTLQRRQQTSTTK--------------------------------------- 523
            +R+ +   +     + +                                          
Sbjct: 164 QLRMISTAESPHAFLREAREHLASGAYAQLETTVVGIGVDMAGEREVPPTWQADLLRAGL 223

Query: 524 ---IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580
                N          NL ++I   R+ +LERF+F+LGI HVG   A++L+ ++   +  
Sbjct: 224 PKFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKALSAWFGDLELI 283

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
                         W    RVP +G  +A+A+  F   P N  A++ LL+        H 
Sbjct: 284 RHLP----------WPLFKRVPDIGGEVARALGHFLDQPGNQQAIDDLLQRGVRIGDTHP 333

Query: 641 KN 642
            +
Sbjct: 334 PS 335


>gi|166226367|sp|Q3YW09|LIGB_SHISS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 560

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 109/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV       +
Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEIARVRNEWWKAKL-----PFVTDGVVVRAAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQRL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|74314119|ref|YP_312538.1| NAD-dependent DNA ligase LigB [Shigella sonnei Ss046]
 gi|73857596|gb|AAZ90303.1| putative enzyme [Shigella sonnei Ss046]
          Length = 562

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 109/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 78  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV       +
Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 233 LMTDRLKELATAGFTLTQRYTRAVKNADEIARVRNEWWKAKL-----PFVTDGVVVRAAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQRL---PGTGSG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 532 RARQVIEWKENAQIKKL 548


>gi|290473319|ref|YP_003466185.1| DNA ligase [Xenorhabdus bovienii SS-2004]
 gi|289172618|emb|CBJ79387.1| DNA ligase (modular protein) [Xenorhabdus bovienii SS-2004]
          Length = 619

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 110/632 (17%), Positives = 206/632 (32%), Gaps = 95/632 (15%)

Query: 15  EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74
           E+ ++E+  L ++++  D  Y Q     I D  YD L                 +  +  
Sbjct: 51  EKIQREMQHLTRQMAEWDQLYRQQGISEIDDEFYDQLLEILTLWRTC-----LHQTSDS- 104

Query: 75  LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134
              +         K  H +    L K+  ++++ +++      W           L+PK+
Sbjct: 105 TFSV-AVPREG--KQPHPVQHTGLNKLKGVKEIHQWLQGRSVVW-----------LQPKV 150

Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194
           DG  +T+ YEKG+ V    RG+G  G +       I  IP+ +    PE + ++GE++  
Sbjct: 151 DGVAVTLVYEKGRLVGLISRGNGSEGTNWMDKSSFITDIPKQIKNA-PERLVLQGELFW- 208

Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254
                  N      G       R+  +G++ R +       +  F+ G        A   
Sbjct: 209 ----QQDNHRQSVAGG---QGARSKVAGLMMRKSSAPELGQIGIFIWGWPDGPNEMA--- 258

Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
              L+++  +GFP          F    +           LP+  DG+V + +       
Sbjct: 259 -VKLERLASMGFPTAQQY-SHRIFSAEDAEKRWSSYFIQPLPFATDGVVLRQET--EPTG 314

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374
              RA S  W I+ K+  +Q  T + D++ +IGRTG ++ +  LE V +    +    L 
Sbjct: 315 RQWRAGSNSWAIAWKYPLQQQLTTVRDVNFKIGRTGRISVLLELEKVKLDDRQVRRVNL- 373

Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
                              ++  GD+V V  AG  +PK+  ++   R  +      P+  
Sbjct: 374 ----------GSVSRWRQWNVYPGDKVTVALAGHGVPKLDKVVW--RIAERPDIQPPNA- 420

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
                                         S QQ    +     +  N++G+G+      
Sbjct: 421 -----------------QDFHSLSCLVSHDSCQQQFIARLTWLGENLNMQGIGQGTWAAL 463

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            K       +    D   L   Q      +  +   G      ++    + R   L  + 
Sbjct: 464 VKH----GLVTHLTDWLALDIAQ------LTEVPNIGIKRAELIFAQFQQARLQPLSSWR 513

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            ++G+ +         A  +     + Q++        +   +              I  
Sbjct: 514 EAIGLPY---------ANRFTDEMGWQQDLLLSKTGAKNSLTT---------KQTAKIAA 555

Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
           F Q+P     V AL           E+N   E
Sbjct: 556 FLQHPEIKTLVHALTVHGIGEKQESEENTVGE 587


>gi|218509071|ref|ZP_03506949.1| NAD-dependent DNA ligase LigA [Rhizobium etli Brasil 5]
          Length = 275

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 147/267 (55%), Positives = 200/267 (74%), Gaps = 1/267 (0%)

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           GFPVN  +++ N+   I+++Y+E+   R  L YDIDG+VYKVD   LQ++LG R+RSPRW
Sbjct: 1   GFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVDSLELQQRLGFRSRSPRW 60

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
             +HKF  +QA T +  I+IQ+GRTG LTPVARL+P+ +GG ++TNATLHNEDYIKG+  
Sbjct: 61  ATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITVGGVVVTNATLHNEDYIKGIGN 120

Query: 385 SGKVMRGG-RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
           SG+ +R    DIR  D V+V+RAG+VIP+++D+++ +R  DA+ + FP  CP+C S  VR
Sbjct: 121 SGERIRPEEHDIRERDTVIVQRAGDVIPQILDVVMEKRAADARSYEFPKTCPVCGSHAVR 180

Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503
           ++N KTGK  +  RCTGG  C AQ  E LKHFVSR+AF+IEGLG +Q+DFFF++EDP+  
Sbjct: 181 EVNEKTGKTDSVRRCTGGFICRAQATEHLKHFVSRNAFDIEGLGSKQVDFFFENEDPSLQ 240

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGF 530
           IR   +IFTL++RQQ S TK+ENI GF
Sbjct: 241 IRTAPEIFTLEKRQQDSLTKLENIDGF 267


>gi|226942521|ref|YP_002797594.1| NAD-dependent DNA ligase LigB [Azotobacter vinelandii DJ]
 gi|257096555|sp|C1DIC2|LIGB_AZOVD RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|226717448|gb|ACO76619.1| NAD-dependent DNA ligase [Azotobacter vinelandii DJ]
          Length = 560

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 108/607 (17%), Positives = 196/607 (32%), Gaps = 98/607 (16%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF-K 88
             D  Y++  +  + D  YD  + R       FP  A +     P      E        
Sbjct: 46  QWDVAYHRDGRSPVADELYDQARARLADWNRCFPGQADA----SP------EPLAGSAGP 95

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           + H +P   L K+ +   +R ++      W            +PK+DG  +T+ Y  G+ 
Sbjct: 96  LLHPVPHTGLAKL-DEAAVRDWMATREDLWT-----------QPKVDGVAVTLEYADGRL 143

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
             A  RGDG  G+D +A +R +P +PR L+      + ++GE+Y      +         
Sbjct: 144 RRAISRGDGRHGQDWTARVRRLPALPRQLAERR--RLILQGELYWRLPGHVQAEA----- 196

Query: 209 GRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268
                A  R A       L+  D          G+G     +  G  +M  ++  L    
Sbjct: 197 -GGRSARARVAGLLARDTLDDGDAA--------GIGLFVWDWPNGPADMRARLDGLERLG 247

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
               R+ +      +   + +      P         + +         RA  P W ++ 
Sbjct: 248 FAEARRYSRPVADFATARQWRERWYREPLPFASDGVVLRQGRRPPGERWRAEPPHWAVAW 307

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           K+   QA   +  +  +IGR+G +TP   L+PV +    I    L               
Sbjct: 308 KYPLAQALAEVRAVRFRIGRSGRITPQLELQPVRLDDRQIRRVAL-----------GSLR 356

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDAQPFSFPSFCPICQSRVVRDLN 446
                D+R GD+V ++ AG+ IP+V  ++    ER     P         C   +     
Sbjct: 357 RWRELDVRPGDQVAIRLAGQSIPQVDAVVWRAAERPALPSPDPAAHHALSCWRPLPGCEE 416

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
                               Q L RL     R   ++ G+G+   +   ++         
Sbjct: 417 --------------------QFLARLDWLGGRRGLDLRGVGRGTWEALLENGRLD----- 451

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
                 L    +    ++  + GFG+ S + L +     R      ++ +LG+   G   
Sbjct: 452 -----DLLGWLELDEARLAELPGFGERSASLLAERFRAARRRPFPMWLRALGLPPAGEAT 506

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
                             + +     + W      P +G   A+ +  F+ +P      +
Sbjct: 507 -------------LPPSWDELAGRGPEQWQR---EPGIGPGRARQLQAFFAHPEVQALRQ 550

Query: 627 ALLKEVS 633
            L     
Sbjct: 551 RLRAAGV 557


>gi|191167813|ref|ZP_03029619.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B7A]
 gi|190902156|gb|EDV61899.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B7A]
          Length = 562

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 109/617 (17%), Positives = 203/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 78  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 123 -VQPKVDGVAVTMVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 233 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHRFNLARK 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 532 RARQVIEWKENAQIKKL 548


>gi|204928646|ref|ZP_03219845.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204322079|gb|EDZ07277.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 561

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 108/618 (17%), Positives = 215/618 (34%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--RHPVAHTGVRKLVDRQAVEQWMR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+  +G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L    +  V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTKKYSLAVKNASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 HWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVMLDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++               +      ++ +I N  GF       ++   N  R     R+
Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                     ++P  G+  A  ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWR----------QLPSTGERRAGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  NP+ I A+   L  
Sbjct: 537 DWRDNPQ-IKALSRWLAA 553


>gi|170681126|ref|YP_001745947.1| NAD-dependent DNA ligase LigB [Escherichia coli SMS-3-5]
 gi|226737619|sp|B1LK84|LIGB_ECOSM RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|170518844|gb|ACB17022.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli SMS-3-5]
          Length = 560

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 111/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETRD 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                               V H +    + K+ +   L  ++      W          
Sbjct: 82  AMM---------PPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV       +
Sbjct: 179 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKELATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|218702416|ref|YP_002410045.1| NAD-dependent DNA ligase LigB [Escherichia coli IAI39]
 gi|226737615|sp|B7NQ11|LIGB_ECO7I RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|218372402|emb|CAR20276.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI39]
          Length = 560

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 111/617 (17%), Positives = 204/617 (33%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETRD 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                               V H +    + K+ +   L  ++      W          
Sbjct: 82  AMM---------PPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV       +
Sbjct: 179 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKELATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRHWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|332750605|gb|EGJ81013.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri 4343-70]
          Length = 556

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 110/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 18  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 71

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 72  ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 116

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 117 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 174

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV       +
Sbjct: 175 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 226

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 227 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 281

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 282 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 339

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 340 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 374

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R              C      C  Q + RL    S+    ++G+G
Sbjct: 375 ------DVVWRGAERTKPTPPENRFNPLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 428

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  RN
Sbjct: 429 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARN 478

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 479 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 525

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 526 RARQVIEWKENAQIKKL 542


>gi|166226369|sp|Q0SYH4|LIGB_SHIF8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 560

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 110/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV       +
Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R              C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNPLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  RN
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARN 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|110807676|ref|YP_691196.1| NAD-dependent DNA ligase LigB [Shigella flexneri 5 str. 8401]
 gi|110617224|gb|ABF05891.1| putative enzyme [Shigella flexneri 5 str. 8401]
          Length = 562

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 110/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 78  ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV       +
Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 233 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R              C      C  Q + RL    S+    ++G+G
Sbjct: 381 ------DVVWRGAERTKPTPPENRFNPLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  RN
Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARN 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 532 RARQVIEWKENAQIKKL 548


>gi|153829889|ref|ZP_01982556.1| DNA ligase [Vibrio cholerae 623-39]
 gi|148874632|gb|EDL72767.1| DNA ligase [Vibrio cholerae 623-39]
          Length = 103

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 2/103 (1%)

Query: 619 PRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            RN   +  LL++    P++      V S +  K +V TG+  ++ R+ A+  +  LGA 
Sbjct: 1   DRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQALGAK 60

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           V+  +S+ TDI+  G+  GSKL KA +LG+++ +E+  +  L+
Sbjct: 61  VTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 103


>gi|331665272|ref|ZP_08366173.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA143]
 gi|331057782|gb|EGI29768.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli TA143]
          Length = 560

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 107/612 (17%), Positives = 201/612 (32%), Gaps = 93/612 (15%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F           
Sbjct: 27  PARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF---------GN 77

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
               +          V H +    + K+ +   L  ++      W           ++PK
Sbjct: 78  ETRDVMMPPLNG--AVIHPVAHTGVRKMADKIALSLWMRERSDLW-----------VQPK 124

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++GE+++
Sbjct: 125 VDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQGEIFL 183

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +              +    N R   +G++ R + +D    L  FV       ++    
Sbjct: 184 KREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLMTDR 235

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             E+      L       V+ A+    + + + + K      P+  DG+V +  +    +
Sbjct: 236 LKELATAGFTLTQTYTRAVKNADEVARVRNAWWKAKL-----PFVTDGVVVRAAKEPESR 290

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+++ K+        +  I   +G++G ++ VA L PV +    +    +
Sbjct: 291 HW--LPGQAEWLVAWKYQPVAQVVEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNI 348

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++                    
Sbjct: 349 -----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID------------------- 378

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLGKQQLD 492
             +      R           +  C      C  Q + RL    S+    ++G+G+    
Sbjct: 379 -DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIGEAGWR 437

Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552
              ++               L   Q  +T       G        L+   N  R     R
Sbjct: 438 ALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARKQPFTR 487

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           ++ ++GI           A    S+                 W  L   P  G   A+ +
Sbjct: 488 WVMAMGIPLTRVA---LNASDERSWSQLLLSTEQF-------WQQL---PGTGSGRARQV 534

Query: 613 VEFYQNPRNICA 624
           +E+ +N +    
Sbjct: 535 IEWKENAQIKKL 546


>gi|298712196|emb|CBJ33067.1| DNA ligase, NAD-dependent [Ectocarpus siliculosus]
          Length = 1170

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 159/467 (34%), Positives = 225/467 (48%), Gaps = 92/467 (19%)

Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178
             +    + F  EPKIDG    + YE G+FV AA RGDG  GEDV+A   A+        
Sbjct: 387 GGEARAELCFVAEPKIDGLTCALLYEDGRFVRAATRGDGERGEDVTANALALGDAVIPHH 446

Query: 179 LN----------------------------------------IPEIIEVRGEVYISKNDF 198
           L                                              EVRGEV++S   F
Sbjct: 447 LPLSSAAAVAEGADGGAVPTREAEAAAAAAAAAERAPSSPVVPRGRFEVRGEVFMSDEAF 506

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL-------------- 243
             LN+E  A G   +A+ RNAA+G LR+L+P     R L FF +G               
Sbjct: 507 ERLNEEREAEGLPAFASARNAAAGSLRQLDPAVTRRRGLRFFAYGAAVGQERGRSASEEA 566

Query: 244 ------GKTSEIFAKGQYEMLQKMRCLGFPVNNGV-RQANTFHGIVSYYNEMKSIRSTLP 296
                 G         Q  +L  +   GF V         +   +V ++  +   RS+L 
Sbjct: 567 AAAAVGGDALASAFGTQDALLTALEGWGFEVARPRLPPTVSADELVEFHRRLARERSSLG 626

Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356
           Y +DG+VYK+D+ +LQ++LG  AR+PRW ++HKF  ++  T L +I IQ+GRTG LTPVA
Sbjct: 627 YAVDGVVYKLDDLALQERLGASARAPRWAVAHKFGAEEGETVLSEIVIQVGRTGALTPVA 686

Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416
            LEPV +GGA ++ ATLHN   ++ L            +R GDRV V+RAG+VIP+V+ +
Sbjct: 687 VLEPVLLGGATVSRATLHNAREVEEL-----------GLRPGDRVKVRRAGDVIPQVLGL 735

Query: 417 IVNERH---------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
                           D+  F+FP+ CP C + VV++ +       A  RC  GL+C AQ
Sbjct: 736 ASPPHPDSSSAGEGDDDSARFAFPTCCPACGTPVVKEEDK------AVTRCPAGLSCPAQ 789

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ 514
            +ERLKHFVS+ AF+I+GLG  +L   ++    A  +R P D+  L+
Sbjct: 790 AVERLKHFVSKGAFDIQGLGPARLLELYE----AGIVRSPVDVLRLR 832



 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 65/233 (27%), Positives = 114/233 (48%), Gaps = 39/233 (16%)

Query: 525  ENILGFGDVSVTNLYDSINKRRN-ISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQ 582
            E   G+G +S  N+ D++++ ++ +SL RFI+SLG+  VGA +A  +A+ +   ++ F  
Sbjct: 934  EGREGWGRLSARNVLDAVDRAKDGVSLGRFIYSLGVPLVGARMAEVIAEEFNGEFEAFWG 993

Query: 583  EINNIIAHNN------------DDWLSLIRVPLVGDIIAQAIVEF-YQNPRNICAVEALL 629
             +                        +   +  +G  +  +++ F      N   VEAL 
Sbjct: 994  ALTRAGLPTPPKVVNGTGPTEPAAAEAFQGIQGMGPAMLASLLRFAKAENGNRPVVEALA 1053

Query: 630  KEVSPSIGRHEKNVSSE------------------------IENKKLVFTGTLQKIQRHK 665
             EV  S     ++                            +E K +VFTGTL +++R +
Sbjct: 1054 SEVRFSARARRRHAGGGEWMVALDAVVRKGGGGGSAGGGAWVEGKTVVFTGTLTRMKRTE 1113

Query: 666  AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
             QE   +LGA V+  +SRKTD+++VG NPG KLEKA++LGV++++EE++   +
Sbjct: 1114 TQEAARELGARVTGSISRKTDMVVVGLNPGGKLEKARELGVEVVSEEEWYRRI 1166



 Score = 89.5 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 47/138 (34%), Gaps = 42/138 (30%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS-- 85
           I+ HD  YY    P + D+EYDAL+ R   I  AFP L RS   + P +++G     +  
Sbjct: 191 IAAHDVRYYLEDVPSVTDAEYDALRLRNGEIEAAFPSLVRS---DSPSSRVGAASTTTDM 247

Query: 86  -------------------------------------LFKVTHSIPTLSLEKIWNIEDLR 108
                                                L  V H     SL+ +++ E   
Sbjct: 248 EALNNQQELPVAAAAATSDGEGGAAPAGPKASKRAARLPAVRHLRSLGSLDNVFDEEKAA 307

Query: 109 KFITRIYRFWQKKDDNSI 126
           +F+ R+ R          
Sbjct: 308 EFVDRVRRAADVATLGEG 325


>gi|331685309|ref|ZP_08385895.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli H299]
 gi|331077680|gb|EGI48892.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
           [Escherichia coli H299]
          Length = 561

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 113/617 (18%), Positives = 208/617 (33%), Gaps = 92/617 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +    
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGIYDQLSARLTQWQRCFGEETHR 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN  G         V H +    + K+ +   L  ++      W          
Sbjct: 82  DAMMPPLN--GA--------VIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 180 GEIFLKREG--------HIQKQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 232 LMTDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWKTKL-----PFVTDGVVVRAAK 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVARVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 345 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 434 EAGWRSLHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLLSTEQF-------WQQL---PGTGSG 530

Query: 608 IAQAIVEFYQNPRNICA 624
             + ++E+ +N +    
Sbjct: 531 RVRQVIEWKENAQIKKL 547


>gi|322612905|gb|EFY09857.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618970|gb|EFY15857.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625253|gb|EFY22080.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322630079|gb|EFY26852.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634271|gb|EFY31006.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635828|gb|EFY32537.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642969|gb|EFY39547.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645038|gb|EFY41569.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649862|gb|EFY46285.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653069|gb|EFY49404.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322661112|gb|EFY57340.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322662399|gb|EFY58612.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667277|gb|EFY63443.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674346|gb|EFY70439.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678446|gb|EFY74507.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680952|gb|EFY76986.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687112|gb|EFY83085.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323198247|gb|EFZ83353.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323200865|gb|EFZ85935.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206619|gb|EFZ91577.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210468|gb|EFZ95354.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216243|gb|EGA00971.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220466|gb|EGA04920.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225330|gb|EGA09564.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228444|gb|EGA12575.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323234265|gb|EGA18353.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237250|gb|EGA21317.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244769|gb|EGA28773.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323245856|gb|EGA29846.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250961|gb|EGA34837.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257291|gb|EGA40990.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262215|gb|EGA45776.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264574|gb|EGA48078.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268863|gb|EGA52321.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 561

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 108/618 (17%), Positives = 214/618 (34%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--RHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+  +G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L       V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTKKYTLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPAAQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++               +      ++ +I N  GF       ++   N  R     R+
Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                     ++P  G+  A  ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWR----------QLPSTGERRAGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  NP+ I A+   L  
Sbjct: 537 DWRDNPQ-IKALSRWLAA 553


>gi|188492181|ref|ZP_02999451.1| putative DNA ligase domain protein [Escherichia coli 53638]
 gi|188487380|gb|EDU62483.1| putative DNA ligase domain protein [Escherichia coli 53638]
          Length = 562

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 109/617 (17%), Positives = 202/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 78  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV       +
Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 233 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 346 QQVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 381 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 532 RARQVIEWKENAQIKKL 548


>gi|312967984|ref|ZP_07782195.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli 2362-75]
 gi|312287243|gb|EFR15152.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli 2362-75]
          Length = 561

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 112/617 (18%), Positives = 208/617 (33%), Gaps = 92/617 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +    
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGEETHR 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN  G         V H +    + K+ +   L  ++      W          
Sbjct: 82  DAMMPPLN--GA--------VIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 180 GEIFLKREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 232 LMTDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWKTKL-----PFVTDGVVVRAAK 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    +I  GD++LV  AG+ IP++               
Sbjct: 345 QRVNI-----------GSVRRWQEWNIAPGDQILVSLAGQGIPRID-------------- 379

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 434 EAGWRSLHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLLSTEQF-------WQQL---PGTGSG 530

Query: 608 IAQAIVEFYQNPRNICA 624
             + ++E+ +N +    
Sbjct: 531 RVRQVIEWKENAQIKKL 547


>gi|323939593|gb|EGB35799.1| NAD-dependent DNA ligase adenylation domain-containing protein
           [Escherichia coli E482]
          Length = 562

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 108/616 (17%), Positives = 207/616 (33%), Gaps = 91/616 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 78  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N     +G++ R + +D    L  FV       +
Sbjct: 181 GEIFLQREG--------HIQQQMGGINAHAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +    E+      L       V+ A+    + + + + +      P+  DG+V +  +
Sbjct: 233 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++ D++           
Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTP 394

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
              SF  +                 A+  C        Q + RL    ++    ++G+G+
Sbjct: 395 PENSFNSLTC-------------YFASDVC------QEQFISRLVWLGAKQVLGLDGIGE 435

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
                  ++               L   Q  +T       G        L+   N  R  
Sbjct: 436 AGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARKQ 485

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
              R++ ++GI       A   A    S+                 W  L   P  G   
Sbjct: 486 PFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSGR 532

Query: 609 AQAIVEFYQNPRNICA 624
           A+ ++E+ +N +    
Sbjct: 533 ARQVIEWKENAQIKKL 548


>gi|323189446|gb|EFZ74727.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli RN587/1]
          Length = 561

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 112/617 (18%), Positives = 208/617 (33%), Gaps = 92/617 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +    
Sbjct: 22  CPAWSSARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGEETHR 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN  G         V H +    + K+ +   L  ++      W          
Sbjct: 82  DAMMPPLN--GA--------VMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV       +
Sbjct: 180 GEIFLKRKG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      ++      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 232 LMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKL-----PFVTDGVVVRAAK 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDKKV 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
              ++                    DI  GD++LV  AG+ IP++               
Sbjct: 345 QRVSI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 379

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL     +    ++G+G
Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGLKQVLGLDGIG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 434 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 530

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 531 RARQVIEWKENAQIKTL 547


>gi|207858976|ref|YP_002245627.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|226737622|sp|B5R5H2|LIGB_SALEP RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|206710779|emb|CAR35140.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 561

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 108/618 (17%), Positives = 210/618 (33%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+  +G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L       V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTNKYTLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 HWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 350 D-----------SVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++       +       L   Q  +T       GF       ++   N  R  S  R+
Sbjct: 440 LHQTHRF----KHIFSWLALTSAQIANT------PGFAKGKSEQIWRQFNLARRQSFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                          G+  A  ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  NP+ I  +   L  
Sbjct: 537 DWRNNPQ-IKTLSRWLAA 553


>gi|326629797|gb|EGE36140.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 562

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 108/618 (17%), Positives = 210/618 (33%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 28  PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 86

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 87  P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 126

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 127 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 185

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+  +G+L R +       L  F+           + 
Sbjct: 186 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 237

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L       V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 238 LSQLAKAGFSLTNKYTLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 292

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 293 HWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 350

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 351 D-----------SVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 393

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 394 -------------PPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMGEASWRA 440

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++       +       L   Q  +T       GF       ++   N  R  S  R+
Sbjct: 441 LHQTHRF----KHIFSWLALTSAQIANT------PGFAKGKSEQIWRQFNLARRQSFTRW 490

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                          G+  A  ++
Sbjct: 491 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWWQLPAT----------GERRAGRVI 537

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  NP+ I  +   L  
Sbjct: 538 DWRNNPQ-IKTLSRWLAA 554


>gi|205354659|ref|YP_002228460.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|226737623|sp|B5RG75|LIGB_SALG2 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|205274440|emb|CAR39472.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
          Length = 561

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 108/618 (17%), Positives = 210/618 (33%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+  +G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L       V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTNKYTLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 HWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 350 D-----------SVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++       +       L   Q  +T       GF       ++   N  R  S  R+
Sbjct: 440 LHQTHRF----KHIFSWLALTSAQIANT------PGFAKGKSEQIWRQFNLARRQSFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                          G+  A  ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWWQLPAT----------GERRAGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  NP+ I  +   L  
Sbjct: 537 DWRNNPQ-IKTLSRWLAA 553


>gi|215488942|ref|YP_002331373.1| NAD-dependent DNA ligase LigB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|254809143|sp|B7UM69|LIGB_ECO27 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|215267014|emb|CAS11459.1| conserved inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 561

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 111/617 (17%), Positives = 207/617 (33%), Gaps = 92/617 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +    
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGEETHR 81

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +    PLN  G         V H +    + K+ +   L  ++      W          
Sbjct: 82  DAMMPPLN--GA--------VIHPVAHTGVRKMADKIALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   + ++ R + +D    L  FV       +
Sbjct: 180 GEIFLKREG--------HIQQQMGGINARAKVADLMMRQDDSDTLNSLGVFVWAWPDGPQ 231

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 232 LMTDRLKELATAGFTLTQTYTRAVKNADEVARVRNAWWKTKL-----PFVTDGVVVRAAK 286

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 287 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 344

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    +I  GD++LV  AG+ IP++               
Sbjct: 345 QRVNI-----------GSVRRWQEWNIAPGDQILVSLAGQGIPRID-------------- 379

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 380 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 433

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 434 EAGWRSLHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARQ 483

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 484 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLLSTEQF-------WQQL---PGTGSG 530

Query: 608 IAQAIVEFYQNPRNICA 624
             + ++E+ +N +    
Sbjct: 531 RVRQVIEWKENAQIKKL 547


>gi|197247797|ref|YP_002148670.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|226737620|sp|B5EXF2|LIGB_SALA4 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|197211500|gb|ACH48897.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 561

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 109/618 (17%), Positives = 211/618 (34%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+  +G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L    +  V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTKKYSLVVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++              TL   Q  +T       GF       ++   N  R  S  R+
Sbjct: 440 LHQTHRFE----HIFSWLTLTSAQIANT------PGFAKGKSEQIWRQFNLARRQSFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                          G+  A  ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  NP+ I  +   L  
Sbjct: 537 DWRNNPQ-IKTLSRWLAA 553


>gi|281603010|gb|ADA75994.1| DNA ligase B [Shigella flexneri 2002017]
          Length = 562

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 109/617 (17%), Positives = 201/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 24  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 77

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 78  ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 122

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  + + +S        ++
Sbjct: 123 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVLQTVSGP-LANSTLQ 180

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV       +
Sbjct: 181 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 232

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 233 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 287

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 288 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 346 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 380

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R              C      C  Q + RL    S+    ++G+G
Sbjct: 381 ------DVVWRGAERTKPTPPENRFNPLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 434

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  RN
Sbjct: 435 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARN 484

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 485 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 531

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 532 RARQVIEWKENAQIKKL 548


>gi|30065077|ref|NP_839248.1| NAD-dependent DNA ligase LigB [Shigella flexneri 2a str. 2457T]
 gi|56480394|ref|NP_709426.2| NAD-dependent DNA ligase LigB [Shigella flexneri 2a str. 301]
 gi|81839371|sp|Q83PM9|LIGB_SHIFL RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|30043338|gb|AAP19059.1| putative enzyme [Shigella flexneri 2a str. 2457T]
 gi|56383945|gb|AAN45133.2| putative enzyme [Shigella flexneri 2a str. 301]
 gi|332751117|gb|EGJ81520.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri 2747-71]
          Length = 560

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 109/617 (17%), Positives = 201/617 (32%), Gaps = 93/617 (15%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  + + +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVLQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R   +D    L  FV       +
Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R              C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNPLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  RN
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARN 482

Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607
               R++ ++GI       A   A    S+                 W  L   P  G  
Sbjct: 483 QPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL---PGTGSG 529

Query: 608 IAQAIVEFYQNPRNICA 624
            A+ ++E+ +N +    
Sbjct: 530 RARQVIEWKENAQIKKL 546


>gi|161616820|ref|YP_001590785.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|189046593|sp|A9MVP4|LIGB_SALPB RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|161366184|gb|ABX69952.1| hypothetical protein SPAB_04639 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 561

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 106/618 (17%), Positives = 211/618 (34%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+  +G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L    +  V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTKKYSLAVKNASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 HWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++               +      ++ +I N  GF       ++   N  R     R+
Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                          G+  A  ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  NP+ I  +   L  
Sbjct: 537 DWRDNPQ-IKTLSRWLAA 553


>gi|255019090|ref|ZP_05291216.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL F2-515]
          Length = 99

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 38/106 (35%), Positives = 51/106 (48%), Gaps = 7/106 (6%)

Query: 52  KRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI 111
            +    I  A P+      P  P  ++GGE+     KV H  P LSL   +N EDL  F 
Sbjct: 1   MQELLKIEEAHPEWV---TPESPSKRVGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFD 57

Query: 112 TRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157
            RI      K  + I +  E KIDG  ++++YE GK+   A RGDG
Sbjct: 58  RRIRD----KVGDDIAYMCELKIDGLAVSLQYENGKYKQGATRGDG 99


>gi|149928190|ref|ZP_01916435.1| DNA ligase [Limnobacter sp. MED105]
 gi|149823081|gb|EDM82321.1| DNA ligase [Limnobacter sp. MED105]
          Length = 93

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 45/85 (52%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
           P+      + S     K  V TGTL +  R +A   +   G  V+  +S+KTD ++ G+ 
Sbjct: 9   PAEETQTTDESHPFFGKTFVLTGTLSQYSRDEAGALIVARGGKVTGSVSKKTDYLLAGEA 68

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLL 718
            GSKLEKA  LGV +++E  F  +L
Sbjct: 69  AGSKLEKATALGVAVLDESTFQGML 93


>gi|162139527|ref|YP_218649.2| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224585537|ref|YP_002639336.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|166226375|sp|Q57I94|LIGB_SALCH RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|254809146|sp|C0Q1X9|LIGB_SALPC RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|224470065|gb|ACN47895.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|322716720|gb|EFZ08291.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 561

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 106/618 (17%), Positives = 210/618 (33%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+  +G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L       V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTNKYTLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 HWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++               +      ++ +I N  GF       ++   N  R     R+
Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                          G+  A  ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  NP+ I  +   L  
Sbjct: 537 DWRDNPQ-IKTLSRWLAA 553


>gi|168241918|ref|ZP_02666850.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205339075|gb|EDZ25839.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 561

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 106/618 (17%), Positives = 211/618 (34%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+  +G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L    +  V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTKKYSLVVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++               +      ++ +I N  GF       ++   N  R     R+
Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                          G+  A  ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  NP+ I  +   L  
Sbjct: 537 DWRDNPQ-IKTLSRWLAA 553


>gi|197263258|ref|ZP_03163332.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197241513|gb|EDY24133.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 561

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 109/618 (17%), Positives = 211/618 (34%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+ A+G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKAAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L    +  V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTKKYSLVVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRDRSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++              TL   Q  +T       GF       ++   N  R     R+
Sbjct: 440 LHQTHRFE----HIFSWLTLTSAQIANT------PGFAKGKSEQIWRQFNLARRQPFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                          G+  A  ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  NP+ I  +   L  
Sbjct: 537 DWRNNPQ-IKTLSRWLAA 553


>gi|198244266|ref|YP_002217699.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|226737621|sp|B5FM71|LIGB_SALDC RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|197938782|gb|ACH76115.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|326625484|gb|EGE31829.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 561

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 107/618 (17%), Positives = 212/618 (34%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+ A+G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKAAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L    +  V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTKKYSLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++               +      ++ +I N  GF       ++   N  R     R+
Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                          G+  A  ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  NP+ I  +   L  
Sbjct: 537 DWRDNPQ-IKTLSRWLAA 553


>gi|238910220|ref|ZP_04654057.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 561

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 106/618 (17%), Positives = 211/618 (34%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+  +G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L    +  V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTKKYSLAVKNASEVERARQSW-----LTSALPFVTDGVVIRMAKEPAAQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 350 -----------GSVKRWKAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++               +      ++ +I N  GF       ++   N  R     R+
Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                          G+  A  ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  NP+ I  +   L  
Sbjct: 537 DWRNNPQ-IKTLSRWLAA 553


>gi|16767024|ref|NP_462639.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|81853648|sp|Q8ZL42|LIGB_SALTY RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|16422307|gb|AAL22598.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|312914765|dbj|BAJ38739.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
          Length = 561

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 108/618 (17%), Positives = 209/618 (33%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--MHPVAHTGVRKLVDRQAVEQWMR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+  +G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L       V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTNKYTLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 HWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLIWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++              TL   Q  +T       GF       ++   N  R     R+
Sbjct: 440 LHQTHRFE----HIFSWLTLTSAQIANT------PGFAKGKSEQIWRQFNLARRQPFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                          G+  A  ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  N + I A+   L  
Sbjct: 537 DWRNNLQ-IKALSRWLAA 553


>gi|59897249|gb|AAX12044.1| DNA ligase [Enterobacteria phage T5]
          Length = 323

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 90/400 (22%), Positives = 151/400 (37%), Gaps = 86/400 (21%)

Query: 25  EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84
           ++ I    + YYQ    +I D EYD L +R   +                   IG +   
Sbjct: 5   KEFIKRCQEAYYQ-GMSLISDEEYDRLVKRF-PLEEE----------------IGPK--- 43

Query: 85  SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144
               + H     SL+K++            Y    K   N +      K+DG  I++ Y 
Sbjct: 44  --GDIPHLYRMYSLQKVY------------YNRGDKPPFNPLGQVETDKLDGCAISLLYI 89

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204
            G+FV A  RG+G  G DV++ +R +    ++         ++ GEV I+K         
Sbjct: 90  NGEFVQALTRGNGILGNDVTSNVRLLNIPKKISQKVP---TQITGEVLITKEV------- 139

Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDITRYL-----NFFVHGLGKTSEIFAKGQYEMLQ 259
                     N RN ASG +   +  D  + +      F  +G+                
Sbjct: 140 ---------ENKRNFASGAINLKDSDDFVQRIGEGGLIFVAYGI---------------- 174

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           +       +     +   +    ++   +           DG V ++++     + G   
Sbjct: 175 QCSAESVGITEAYLKDMLWLENENFLTVVNVRSFFKWIPTDGKVVRINDNHQFFREGWTN 234

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           + PR   + K  E+   T L  ++ Q+G +G +TPV   EPV I  A I  ATL+N DYI
Sbjct: 235 KFPRGAFAIKEDEEGEITTLTKVEWQVGASGKVTPVGYFEPVIIDDATIVKATLNNVDYI 294

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
             L           D+ +G ++ V RAG VIP +V+ + +
Sbjct: 295 NSL-----------DLEIGCQIRVIRAGGVIPCIVERVYD 323


>gi|167995212|ref|ZP_02576302.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205327077|gb|EDZ13841.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261248887|emb|CBG26741.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996002|gb|ACY90887.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301160276|emb|CBW19799.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|321226792|gb|EFX51842.1| DNA ligase, LigB [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323132100|gb|ADX19530.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332990588|gb|AEF09571.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 561

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 108/618 (17%), Positives = 209/618 (33%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+  +G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L       V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTNKYTLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 HWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLIWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++              TL   Q  +T       GF       ++   N  R     R+
Sbjct: 440 LHQTHRFE----HIFSWLTLTSAQIANT------PGFAKGKSEQIWRQFNLARRQPFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                          G+  A  ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  N + I A+   L  
Sbjct: 537 DWRNNLQ-IKALSRWLAA 553


>gi|194449070|ref|YP_002047770.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|226737624|sp|B4T9Z1|LIGB_SALHS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|194407374|gb|ACF67593.1| NAD-dependent DNA ligase domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
          Length = 561

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 106/618 (17%), Positives = 211/618 (34%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLLYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+  +G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L    +  V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTKKYSLVVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++               +      ++ +I N  GF       ++   N  R     R+
Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                          G+  A  ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  NP+ I  +   L  
Sbjct: 537 DWRDNPQ-IKTLSRWLAA 553


>gi|167549012|ref|ZP_02342771.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205325606|gb|EDZ13445.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 561

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 107/618 (17%), Positives = 212/618 (34%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+  +G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L    +  V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTKKYSLVVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPDSHFNSLTCFYASETCQEQFISRLVWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++               +      ++ +I N LGF       ++   N  R     R+
Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTLGFAKGKSEQIWRQFNLARRQPFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                          G+  A  ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  NP+ I  +   L  
Sbjct: 537 DWRDNPQ-IKTLSRWLAA 553


>gi|168464952|ref|ZP_02698844.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195632322|gb|EDX50806.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 561

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 108/618 (17%), Positives = 210/618 (33%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+  +G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L    +  V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTKKYSLVVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++              TL   Q  +T       GF       ++   N  R     R+
Sbjct: 440 LHQTHRFE----HIFSWLTLTSAQIANT------PGFAKGKSEQIWRQFNLARRQPFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                          G+  A  ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  NP+ I  +   L  
Sbjct: 537 DWRNNPQ-IKTLSRWLAA 553


>gi|182682929|ref|YP_001837053.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage EPS7]
 gi|182630641|gb|ACB97573.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage EPS7]
          Length = 323

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 90/395 (22%), Positives = 148/395 (37%), Gaps = 76/395 (19%)

Query: 25  EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84
           ++ I    + YYQ    +I D EYD L +R   +                   IG +   
Sbjct: 5   KEFIKRCQEAYYQ-GMSLISDEEYDRLIKRF-PLEEE----------------IGPK--- 43

Query: 85  SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144
               + H     SL+K++            Y    K   N +      K+DG  I++ Y 
Sbjct: 44  --GDIPHLYRMYSLQKVY------------YGRGDKAPFNPLGQVETDKLDGCAISLLYI 89

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204
            G+FV A  RG+G  G DV+  ++ +     +         ++ GEV I+K         
Sbjct: 90  NGEFVQALTRGNGILGNDVTHNVKMLNIPKTISQKVP---TQITGEVLITKEV------- 139

Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
                     N RN ASG +   +  D          G G    +    Q          
Sbjct: 140 ---------ENKRNYASGAINLKDSDD-----FIQRIGEGGLIFVAYGIQCS------AE 179

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
              +     +   +    ++   +           DG V ++++ +   + G   + PR 
Sbjct: 180 TVGITEAYLKDMLWLENENFLTVVNVRSFFKWIPTDGKVVRINDNNKFFREGWTNKFPRG 239

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
             + K  E+   T L+ ++ Q+G +G +TPV   EPV I  A I  ATL+N DYI  L  
Sbjct: 240 AFAIKEDEEGEITTLVKVEWQVGASGKVTPVGYFEPVIIDDATIVKATLNNVDYINAL-- 297

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
                    D+ +G ++ V RAG VIP +V+ + +
Sbjct: 298 ---------DLEIGCQIRVIRAGGVIPCIVERVYD 323


>gi|46401852|ref|YP_006944.1| NAD-dependent DNA ligase, subunit A [Enterobacteria phage T5]
 gi|45775030|gb|AAS77162.1| NAD-dependent DNA ligase, subunit A [Enterobacteria phage T5]
 gi|51512054|gb|AAU05253.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage T5]
          Length = 323

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 90/400 (22%), Positives = 152/400 (38%), Gaps = 86/400 (21%)

Query: 25  EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84
           ++ I    + YYQ    +I D EYD L +R   +                   IG +   
Sbjct: 5   KEFIKRCQEAYYQ-GMSLISDEEYDRLVKRF-PLEEE----------------IGPK--- 43

Query: 85  SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144
               + H     SL+K++            Y    K   N +      K+DG  I++ Y 
Sbjct: 44  --GDIPHLYRMYSLQKVY------------YNRGDKPPFNPLGQVETDKLDGCAISLLYI 89

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204
            G+FV A  RG+G  G DV++ +R +    ++         ++ GEV I+K         
Sbjct: 90  NGEFVQALTRGNGILGNDVTSNVRLLNIPKKISQKVP---TQITGEVLITKEV------- 139

Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDITRYL-----NFFVHGLGKTSEIFAKGQYEMLQ 259
                     N RN ASG +   +  D  + +      F  +G+                
Sbjct: 140 ---------ENKRNFASGAINLKDSDDFVQRIGEGGLIFVAYGI---------------- 174

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           +       +     +   +    ++   +           DG V ++++ +   + G   
Sbjct: 175 QCSAESVGITEAYLKDMLWLENENFLTVVNVRSFFKWIPTDGKVVRINDNNKFFREGWTN 234

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
           + PR   + K  E+   T L  ++ Q+G +G +TPV   EPV I  A I  ATL+N DYI
Sbjct: 235 KFPRGAFAIKEDEEGEITTLTKVEWQVGASGKVTPVGYFEPVIIDDATIVKATLNNVDYI 294

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
             L           D+ +G ++ V RAG VIP +V+ + +
Sbjct: 295 NSL-----------DLEIGCQIRVIRAGGVIPCIVERVYD 323


>gi|168235353|ref|ZP_02660411.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194734322|ref|YP_002116682.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|226737627|sp|B4TZZ8|LIGB_SALSV RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|194709824|gb|ACF89045.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197291581|gb|EDY30933.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 561

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 108/618 (17%), Positives = 212/618 (34%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+  +G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L       V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTKKYTLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPAAQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++               +      ++ +I N  GF       ++   N  R  S  R+
Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNLARRQSFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                          G+  A  ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  NP+ I A+   L  
Sbjct: 537 DWRDNPQ-IKALSRWLSA 553


>gi|56415629|ref|YP_152704.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197364556|ref|YP_002144193.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81821323|sp|Q5PC41|LIGB_SALPA RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|226737626|sp|B5BI22|LIGB_SALPK RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|56129886|gb|AAV79392.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197096033|emb|CAR61620.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 561

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 107/618 (17%), Positives = 212/618 (34%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWVR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+ A+G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKAAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L    +  V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTKKYSLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPGSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++               +      ++ +I N  G        ++      R  S  R+
Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTPGVAKGKSEQIWRQFYLARRQSFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                          G+  A  ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  NP+ I A+   L  
Sbjct: 537 DWRNNPQ-INALSRWLAA 553


>gi|168260506|ref|ZP_02682479.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|205350522|gb|EDZ37153.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 561

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 109/618 (17%), Positives = 211/618 (34%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+ A+G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKAAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L    +  V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTKKYSLVVKNASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 HWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++                
Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSCERSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++              TL   Q  +T       GF       ++   N  R  S  R+
Sbjct: 440 LHQTHRFE----HIFSWLTLTSAQIANT------PGFAKGKSEQIWRQFNLARRQSFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                          G+  A  ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  NP+ I  +   L  
Sbjct: 537 DWRNNPQ-IKTLSRWLAA 553


>gi|168233263|ref|ZP_02658321.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194470644|ref|ZP_03076628.1| NAD-dependent DNA ligase adenylation domain [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194457008|gb|EDX45847.1| NAD-dependent DNA ligase adenylation domain [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205332601|gb|EDZ19365.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 561

 Score =  143 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 109/618 (17%), Positives = 211/618 (34%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+  +G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASTLNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L    +  V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTNKYSLAVKNASEVERARQSW-----LTSALPFVTDGVVIRMAKEPAAQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++              TL   Q  +T       GF       ++   N  R  S  R+
Sbjct: 440 LHQTHRFE----HIFSWLTLTSAQIANT------PGFAKGKSEQIWRQFNLARRQSFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                          G+     ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRVGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  NP+ I A+   L  
Sbjct: 537 DWRDNPQ-INALSRWLAA 553


>gi|183597041|ref|ZP_02958534.1| hypothetical protein PROSTU_00276 [Providencia stuartii ATCC 25827]
 gi|188023700|gb|EDU61740.1| hypothetical protein PROSTU_00276 [Providencia stuartii ATCC 25827]
          Length = 570

 Score =  143 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 92/439 (20%), Positives = 159/439 (36%), Gaps = 50/439 (11%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
              LS ++ +KE   L +++   +  Y       + D  YD L            +L+  
Sbjct: 41  CSTLSQDELKKESQKLGEQLQQWNRLYRLSGNSPVTDETYDQLLNTWQQWQKC-QNLSGQ 99

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
             P      I    +     V H I    L+K+ N  D+ K+I      W          
Sbjct: 100 LPP------IHLPPHS--RTVKHPIVHTGLKKL-NEVDIGKWIDTREEVW---------- 140

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            L+PK+DG  I++ Y++GK V    RG+G  G +       IP IP+ L  + P++I ++
Sbjct: 141 -LQPKVDGVAISLVYQQGKLVSMISRGNGIEGLEWRDKADFIPAIPKQLPTSQPQLI-LQ 198

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE++    D                 N RN  +G L R             +        
Sbjct: 199 GELFWRLKD--------HRQQASGGVNARNQVAGWLMR---KSKPVTPEANIDVFIWAWP 247

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                  E  +++  LGFP+        T    V  +      +  +P+  DG+V K   
Sbjct: 248 EGVGKAEEQWRQLANLGFPLTQQYSHKVTTMAQVKKWQSY-YYQQPMPFATDGIVLKS-- 304

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
           F   +    +     W ++ K    + ++++ D+  ++GRTG ++ VA +EPV +    +
Sbjct: 305 FPTPRVAAWQVNHNSWSVAWKHPYTRIASKVTDLHFRVGRTGAVSVVAEIEPVELDSKKV 364

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV---DIIVNERHPDA 425
           +   L                   +D+ VGD + V  AG  IPK+      +    +PD 
Sbjct: 365 SRLYL-----------GSLKSWQKKDLLVGDTIQVALAGHGIPKLESVIWRLQQRTYPDL 413

Query: 426 QPFSFPSFCPICQSRVVRD 444
             F               +
Sbjct: 414 SQFKQFHALSCFVMTPQCE 432


>gi|196234149|ref|ZP_03132982.1| DNA ligase (NAD(+)) [Chthoniobacter flavus Ellin428]
 gi|196221800|gb|EDY16337.1| DNA ligase (NAD(+)) [Chthoniobacter flavus Ellin428]
          Length = 122

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
           +   +  +  L Q++  H+  YY  + P I D++YDAL R    +  A P+      P+ 
Sbjct: 1   MPNVQTRIEELRQQLEEHNRRYYDEATPTISDADYDALFRELRDLEDAHPEFI---TPDS 57

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLR 108
           P  ++G +      +V H++P LSL+ ++  E LR
Sbjct: 58  PTRRVGEKATAGFRQVRHAVPMLSLDNLFAKEGLR 92


>gi|200387460|ref|ZP_03214072.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|199604558|gb|EDZ03103.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 561

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 108/618 (17%), Positives = 210/618 (33%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+  +G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L    +  V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTKKYSLVVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLIWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++              TL   Q  +T       GF       ++   N  R     R+
Sbjct: 440 LHQTHRFE----HIFSWLTLTSAQIANT------PGFAKGKSEQIWRQFNLARRQPFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                          G+  A  ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  N + I A+   L  
Sbjct: 537 DWRNNLQ-IKALSRWLAA 553


>gi|161505725|ref|YP_001572837.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|189046592|sp|A9MKM6|LIGB_SALAR RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|160867072|gb|ABX23695.1| hypothetical protein SARI_03901 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 561

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 106/614 (17%), Positives = 210/614 (34%), Gaps = 93/614 (15%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E++ L+Q+++  +D Y++     + DS YD L  +             S  P  P    
Sbjct: 32  EEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSAKLVQWQRCVGQDVSS-TPVSP---- 86

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
                      TH +    + K+ + + + +++                F ++PK+DG  
Sbjct: 87  ---PLNGTT--THPVAHTGVRKLADRQAVAQWMR-----------GHSEFWVQPKVDGVA 130

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           +T+ Y+ GK   A  RG+G  GED +  IR I +IP+           ++GE+++     
Sbjct: 131 VTLVYQNGKLTRAISRGNGLQGEDWTQKIRQISSIPQTTRGA-LANAVLQGEIFL----- 184

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
                    +G     N R+  +G+L R   T     L  F+           +   ++ 
Sbjct: 185 QLKGHIQQRMGGM---NARSKVAGMLMRQKNTSALNSLGIFIWAWPDGPANMTERLSQLA 241

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           +    L    +  V+ A+        +     + S LP+  DG+V ++ +    +     
Sbjct: 242 KAGFSLTQKYSQMVKNASEVERARRSW-----LTSALPFVTDGVVIRMAKEPSSQYWRPG 296

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
                W+ + K+       ++  I   +G++G ++ +A L PV +    +    +     
Sbjct: 297 QGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKISVIASLVPVMLDDKRVKRVNI----- 349

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
                          DI  GD++LV  AG+ IP++ +++   R                 
Sbjct: 350 ------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV----------- 392

Query: 439 SRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497
                      G    +  C      C  Q + RL    SR A  ++G+G+       ++
Sbjct: 393 ---------PPGNHFNSLTCFYASATCQEQFISRLVWLGSRAALGLDGMGEASWRALHQT 443

Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                          +      +  +I N  GF       ++   N  R     R++ ++
Sbjct: 444 ----------HRFEHIFSWLALTPAEIANTPGFAKGKSELIWRQFNLARRQPFSRWVMAM 493

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
               +    A   A    S++      +                   G+  A  + ++  
Sbjct: 494 ---DIPLTQAALQASGDRSWEQLLMRTDQHWRQLPAT----------GERRAGRVSDWRD 540

Query: 618 NPRNICAVEALLKE 631
           NPR I A+   L  
Sbjct: 541 NPR-IKALSRWLAA 553


>gi|168818429|ref|ZP_02830429.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205344676|gb|EDZ31440.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320088159|emb|CBY97921.1| DNA ligase Polydeoxyribonucleotide synthase [NAD+] [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 561

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 106/618 (17%), Positives = 211/618 (34%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--MHPVAHTGVRKLADRQAVEQWMR-----------GRSELWIQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+  +G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L    +  V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTKKYSLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPAAQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++               +      ++ +I N  GF       ++   N  R     R+
Sbjct: 440 LHQT----------HRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                          G+  A  ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  N + I A+   L  
Sbjct: 537 DWRNNLQ-IKALSRWLAA 553


>gi|324019686|gb|EGB88905.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 117-3]
          Length = 450

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 81/411 (19%), Positives = 154/411 (37%), Gaps = 49/411 (11%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           +      E+      L       V+ A+    + + + + K      P+  DG+V +  +
Sbjct: 231 LMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL-----PFVTDGVVVRGAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L PV +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
               +                    DI  GD++LV  AG+ IP++ D++  
Sbjct: 344 QRVNI-----------GSVRRWEEWDIAPGDQILVSLAGQGIPRIDDVVWR 383


>gi|149911106|ref|ZP_01899733.1| DNA ligase, NAD-dependent, putative [Moritella sp. PE36]
 gi|149805856|gb|EDM65845.1| DNA ligase, NAD-dependent, putative [Moritella sp. PE36]
          Length = 413

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 84/405 (20%), Positives = 158/405 (39%), Gaps = 53/405 (13%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP--L 75
           +  +S LE +I  H   YY    P++ D E+D L      ++H             P   
Sbjct: 50  QHRISYLETQIIKHRRIYYAGQTPLLHDGEFDLLVDELTVLSHCL----------SPVLT 99

Query: 76  NKIGGEMNLSLFKVT----HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131
              GG +  +  +      H    LSL  +     + KF                   ++
Sbjct: 100 QIGGGNLQHNDTRQRDRQPHRQQMLSLNSVRERTAVDKFYQ---------LHQDQQLLIQ 150

Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191
           PK DG  I + YEKG  V A+ RGDG  G+D+ A    + +      +  P  + + GE+
Sbjct: 151 PKFDGMAIELVYEKGMLVGASSRGDGKQGKDLLAL--MLRSNAVNSMIAYPYTLVIHGEL 208

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250
           Y+ + D+              Y + R+  +GI  +L+P       L F       +    
Sbjct: 209 YVGQQDWQLRGK---------YVSSRHMTAGIASQLSPAQTDVMSLRFMPWRWIDSPYN- 258

Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310
                E++   +       +  + ++           +   ++T  + +DG+V K+   +
Sbjct: 259 ----NELMGLAQLAMLGFADMSKMSHVIDRPQDIDYWLAHYQNTEAFLLDGIVLKLANNT 314

Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370
           LQ+Q G    +PRW ++ KF   +  + ++DI  Q+G++G +TP+  ++P+ + G  +T 
Sbjct: 315 LQRQYGHTQHAPRWALALKFTGPKGLSNVIDITYQVGKSGRVTPIIHVQPLALSGRQVTR 374

Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
            +              +       I VG +V ++  G   P++  
Sbjct: 375 VSG-----------RSQPWLLQSKIEVGSQVEIELVGNATPQLTR 408


>gi|194445315|ref|YP_002042988.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|226737625|sp|B4SXE9|LIGB_SALNS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|194403978|gb|ACF64200.1| NAD-dependent DNA ligase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 561

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 108/618 (17%), Positives = 210/618 (33%), Gaps = 91/618 (14%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--MHPVAHTGVRKLADRQVVEQWMR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           ++GE+++
Sbjct: 126 VDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGA-LANAVLQGEIFL 184

Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253
            +            +G     N R+  +G+L R +       L  F+           + 
Sbjct: 185 QREG-----HIQQRMGGM---NARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPER 236

Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313
             ++ +    L    +  V+ A+        +     + S LP+  DG+V ++ +    +
Sbjct: 237 LSQLAKAGFSLTKKYSLVVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQ 291

Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373
                     W+ + K+       ++  I   +G++G +T VA L PV +    +    +
Sbjct: 292 YWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI 349

Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433
                               DI  GD++LV  AG+ IP++ +++   R            
Sbjct: 350 -----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------ 392

Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493
                        P      +         C  Q + RL    SR A  ++G+G+     
Sbjct: 393 -------------PPDSHFNSLTCFYASATCQEQFISRLIWLGSRSALGLDGMGEASWRA 439

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             ++              TL   Q  +T       GF       ++   N  R     R+
Sbjct: 440 LHQTHRFE----HIFSWLTLTSAQIANT------PGFAKGKSEQIWRQFNLARRQPFTRW 489

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           I ++    +    A   A    S++                          G+  A  ++
Sbjct: 490 IMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GERRAGRVI 536

Query: 614 EFYQNPRNICAVEALLKE 631
           ++  N + I A+   L  
Sbjct: 537 DWRNNLQ-IKALSRWLAA 553


>gi|330883607|gb|EGH17756.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 94

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              +      +  +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GS
Sbjct: 5   SEKKTVEGLPLAGQTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGS 64

Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           KL KA +LG+ +++E+  L  L +    + 
Sbjct: 65  KLTKANELGLTVLDEDALLKRLTELGVAVD 94


>gi|238755583|ref|ZP_04616920.1| DNA ligase B [Yersinia ruckeri ATCC 29473]
 gi|238706183|gb|EEP98563.1| DNA ligase B [Yersinia ruckeri ATCC 29473]
          Length = 569

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 103/629 (16%), Positives = 198/629 (31%), Gaps = 104/629 (16%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRC-------DAIAHA 61
               S  +   E++ +E++    D  Y+Q    +I D  YD L +R         A+  A
Sbjct: 24  CPEWSEHELVTEIAKMEEQFGQWDKAYHQQGNSLIDDDIYDQLHQRLSHWKSCVKALEPA 83

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
                 +                   KVTH +    L+K+       ++I      W   
Sbjct: 84  VNSHITALAGVS-------------DKVTHPVAHTGLKKLTGNLAASEWILARKNLW--- 127

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
                   ++PK+DG  +T+ Y +G       RGDG  G+D +   + I  IP  L    
Sbjct: 128 --------VQPKVDGVAVTLTYLQGHLTQVISRGDGVRGQDWTDKAQYISAIP-SLISPA 178

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVH 241
           P ++ + GE+++  +D    +      G    A+   A          + I  ++  +  
Sbjct: 179 PPLLVLHGELFLRVHDHRQKDS----GGINARASVAGALMRKSPSSLLSQIGVFIWAWPD 234

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
           G     E                  P+ +            + +      +S LP+  DG
Sbjct: 235 GPASMVEKLRTLHRMGFTLSEEFSVPITSFT---------DAVHWRKIWFQSPLPFVTDG 285

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V + +E         +     W I+ K+   Q   ++  ++  IGRTG ++ V  L P+
Sbjct: 286 IVIRQEEEPAGHYWQSQPGY--WSIAWKYPPFQQMAQVKSVNFTIGRTGKISAVLHLSPI 343

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +               +KG++          ++  GD+V+V  AG+ IP++  +     
Sbjct: 344 KLDDKW-----------VKGVNLGTVARWKRWNVLPGDQVIVSLAGQGIPRLDKVAWRVD 392

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE--RLKHFVSRD 479
             D                   +++           C    +   +     RL     R 
Sbjct: 393 KRD-------------------EISTPDMDQFHTFSCFRRESTLCETQFIARLTWLSGRS 433

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
             ++ G+                          L    + +   I  + G G+V    +Y
Sbjct: 434 GLDMLGISSGIWQALTAHGLMG----------DLASWLELTPEIIATVPGIGEVKANKIY 483

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
               K +      ++ +LG                       +    +      +WL++ 
Sbjct: 484 LQFQKAKTRPFISWLAALGFPKAAIN------------PRVPKTWAALQQQPRGEWLTMA 531

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
               +G    + I EF  +P  +   E L
Sbjct: 532 N---IGAGRLKQITEFTTHPEMLQLAERL 557


>gi|326633001|ref|YP_004306590.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage SPC35]
 gi|321272195|gb|ADW80087.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage SPC35]
          Length = 323

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 92/397 (23%), Positives = 152/397 (38%), Gaps = 86/397 (21%)

Query: 28  ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87
           I    + YYQ    +I D EYD L +R   +                   IG +      
Sbjct: 8   IKRCQEAYYQ-GMSLISDEEYDRLIKRF-PLEEE----------------IGPK-----G 44

Query: 88  KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
            + H     SL+K++            Y    K   N +      K+DG  I++ Y  G+
Sbjct: 45  DIPHLYRMYSLQKVY------------YNRGDKPPFNPLGQVETDKLDGCAISLLYINGE 92

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
           FV A  RG+G  G DV++ +R +    ++         ++ GEV I+K            
Sbjct: 93  FVQALTRGNGILGNDVTSNVRLLNIPKKISQKVP---TQITGEVLITKEV---------- 139

Query: 208 VGRKPYANPRNAASGILRRLNPTDITRYL-----NFFVHGLGKTSEIFAKGQYEMLQKMR 262
                  N RN ASG +   +  D  + +      F  +G+                +  
Sbjct: 140 ------ENKRNFASGAINLKDSDDFVQRIGEGGLIFVAYGI----------------QCS 177

Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
                +     +   +    ++   +           DG V ++++ +   + G   +SP
Sbjct: 178 AESVGITEAYLKDMLWLENENFLTVVNVRSFFKWIPTDGKVVRINDNNKFFREGWTNKSP 237

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
           R   + K  E+   T L  ++   G +G +TPV   EPV I  A+IT ATL+N DYI  L
Sbjct: 238 RGAFAIKEDEEGEITTLTKVEWATGASGKITPVGYFEPVIIDDAVITKATLNNVDYINSL 297

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
                      D+ +G ++ V RAG VIPK+V+ + +
Sbjct: 298 -----------DLEIGCQIRVIRAGGVIPKIVERVYD 323


>gi|32396677|gb|AAP49295.1| NAD-dependent DNA ligase [Meiothermus ruber]
          Length = 99

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 6/104 (5%)

Query: 45  DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWN 103
           D+EYD L +   A+  A P+L     P+ P   +G  +  +    V H     SL   ++
Sbjct: 1   DAEYDRLLQELRALEEAHPELII---PDSPTQTVGSAILETPFTPVPHPTRMYSLGNAFS 57

Query: 104 IEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147
            +D+  F   I RF  +++     + LE KIDG  + + YE+G 
Sbjct: 58  QDDIADFEASINRFLGREESR--EYVLEYKIDGLSVNLIYEEGV 99


>gi|320177344|gb|EFW52346.1| DNA ligase , LigB [Shigella dysenteriae CDC 74-1112]
          Length = 508

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 95/556 (17%), Positives = 184/556 (33%), Gaps = 80/556 (14%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+   +Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEIFRQQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 179 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 230

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +    E+      L       V+ A+    + + + + +      P+  DG+V +  +
Sbjct: 231 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 285

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L  V +    +
Sbjct: 286 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLASVMLDDKKV 343

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
               +                    DI  GD++LV  AG+ IP++               
Sbjct: 344 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------------- 378

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAFNIEGLG 487
                  +      R           +  C      C  Q + RL    S+    ++G+G
Sbjct: 379 ------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIG 432

Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547
           +       ++               L   Q  +T       G        L+   N  R 
Sbjct: 433 EAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQFNLARK 482

Query: 548 ISLERFIFSLGIRHVG 563
               R++ ++GI    
Sbjct: 483 QPFTRWVMAMGIPLTR 498


>gi|291086421|ref|ZP_06571502.1| NAD-dependent DNA ligase adenylation domain protein [Citrobacter
           youngae ATCC 29220]
 gi|291068208|gb|EFE06317.1| NAD-dependent DNA ligase adenylation domain protein [Citrobacter
           youngae ATCC 29220]
          Length = 519

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 105/602 (17%), Positives = 212/602 (35%), Gaps = 93/602 (15%)

Query: 30  YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89
             +D Y++     + D  YD L  +       F D + S+    P+N            +
Sbjct: 3   RWNDSYWKQGVSAVDDGVYDQLNAQLTQWQRCFGDDSSSDLSTPPIN----------GTI 52

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H +P   + K+ + + L++++ R+               ++PK+DG  +T+ Y  G  V
Sbjct: 53  AHPVPHTGVRKLADKQALQQWM-RVRSDL----------WVQPKVDGVAVTLVYRHGNLV 101

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209
            A  RG+G  GED +  +  IP++P            ++GE+++               G
Sbjct: 102 RAISRGNGLKGEDWTQKVLLIPSVPHTTKGL-LANSTLQGEIFL-----QQEGHVQQQRG 155

Query: 210 RKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269
                N R+  +G++ R +  ++ R L  F+        + ++   ++            
Sbjct: 156 GM---NARSKVAGMMMRQSNPELLRSLAIFIWAWPDGPAVMSERLAQLTAAGFSFAQRYT 212

Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329
             V+ A+      + +       S LP+  DG+V +       +          W+ + K
Sbjct: 213 QAVKNADDVEHARARWW-----TSALPFVTDGVVVRSG--KEPQARYWVPGQGDWLAAWK 265

Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389
           +      + + DI   +G++G +  VA L PV +    +    +                
Sbjct: 266 YPPVAQVSEVTDIQFSVGKSGKIAVVALLAPVMLDDKRVQRVNI-----------GSVRR 314

Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449
               DI  GDR+L+  AG+ IP++ +++                     S       P  
Sbjct: 315 WNEWDIAPGDRILISLAGQGIPRIDEVVWR-------------------STQRTKPKPPE 355

Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509
           G+  +         C  Q + RL    +++   +EG+G+       +    A+       
Sbjct: 356 GRFNSMTCFYATPECYEQFIARLVWLGAKEVLELEGIGEAGWRELHQ----AYRFEHIFS 411

Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569
              L + Q  ST  +             ++   N  R++   R++ ++GI       A  
Sbjct: 412 WLGLTQEQLQSTLGVSKGE--------KIWHQFNLSRHLPFTRWVIAMGI---PLTQATL 460

Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
            A    S+Q               D  S  ++P +G+   + ++++    R I A+   L
Sbjct: 461 NASRDDSWQQLQD----------RDEQSWRQLPSMGERRTRRVIQWL-EDREITALSNWL 509

Query: 630 KE 631
             
Sbjct: 510 AA 511


>gi|159487072|ref|XP_001701559.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158271500|gb|EDO97317.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 623

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 69/251 (27%), Positives = 108/251 (43%), Gaps = 35/251 (13%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
           +  LE  ++ H + Y+    P I D+ YD LKRR   +A     L      +     +G 
Sbjct: 1   MKLLEAALTKHRELYFNQ-TPEISDAAYDELKRRFRDLAAR---LRGVAAED-VAFPVGA 55

Query: 81  EMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI---FFTLEPKID 135
            +    +L KV H++P  SL  + + +++  ++ R      +    +     + +EPK+D
Sbjct: 56  PVAAASALRKVKHTVPMTSLAAVNSRQEVEAWMGRTLARLAQLRQGAAGSWGWVVEPKVD 115

Query: 136 GTMITIRYEK-----------GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-- 182
           G  + + Y +            +   AA RGDG  GEDV+            L   +P  
Sbjct: 116 GLAVRVVYRRVAKGDGGGGAAYELQEAATRGDGEVGEDVTHNALHGGIQGLPLRFTMPPG 175

Query: 183 -----------EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD 231
                      E +EVRGEVY+   D   +N E  A G   +AN RNAASG LR L+P +
Sbjct: 176 AATSAPTSAAPEWVEVRGEVYVRIADLQQVNKEAEAAGGSGFANARNAASGGLRLLDPAE 235

Query: 232 ITRYL-NFFVH 241
             R   +F  +
Sbjct: 236 CRRRRLSFVAY 246



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 8/70 (11%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +   ++  TGTL+          +   GA     +   T +++VG + GSK ++A + GV
Sbjct: 557 VAGMRICVTGTLE--------AMLEASGAEFHKDVKSDTQVLVVGADAGSKRDRAAKKGV 608

Query: 707 KIMNEEQFLF 716
           ++M E  F  
Sbjct: 609 RVMEERDFWQ 618



 Score = 53.3 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 73/233 (31%), Gaps = 22/233 (9%)

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL---ACSAQQ 468
           +V+ ++   R P AQP++ P+ CP C   V       +        C        CSAQQ
Sbjct: 281 EVMRVLPELRPPGAQPWALPACCPACGGPVRLQP-AASKDAGEQLLCVAAEQGAGCSAQQ 339

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
              L HF         GL    +     +      +                   +  + 
Sbjct: 340 ERMLLHFAKV-CLKGSGLAAGVMQALTAAGLLEGGLPDFYTRLD--------RATLSALP 390

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
           GFG      +   +   +++     +  L I+ VG   A++L   Y            + 
Sbjct: 391 GFGAARAEAIAARVAASKSMRSAELLHGLNIKSVGETAAKALGVAYPRL---------VP 441

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
                 W  +     +G +++Q +  + + P N   ++ L +     +     
Sbjct: 442 ELQRASWQEIKAASGLGQVVSQNVETWMRQPANQQLLQRLSQAGVACVASAPA 494


>gi|270700816|ref|ZP_06223057.1| DNA ligase [Haemophilus influenzae HK1212]
 gi|270315848|gb|EFA27948.1| DNA ligase [Haemophilus influenzae HK1212]
          Length = 152

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 3/152 (1%)

Query: 95  TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154
            LSL+  ++  +   F+ RI           + F  EPK+DG  ++I Y  G+   AA R
Sbjct: 1   MLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPKLDGLAVSILYVNGELTQAATR 59

Query: 155 GDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
           GDG +GED++A IR I  +P ++L+ N P  +EVRGEV++    F  LN   +    K +
Sbjct: 60  GDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHAGFERLNKYALEHNEKTF 119

Query: 214 ANPRNAASGILRRLNPTDITRYL-NFFVHGLG 244
           ANPRNAA+G LR+L+P   ++       +G+G
Sbjct: 120 ANPRNAAAGSLRQLDPNITSKRPLVLNAYGIG 151


>gi|213024998|ref|ZP_03339445.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 262

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 114/285 (40%), Positives = 173/285 (60%), Gaps = 27/285 (9%)

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
                +DIDG+V KV+  +LQ+QLG  AR+PRW ++ KF  ++  T + D++ Q+GRTG 
Sbjct: 5   MPHAGFDIDGVVIKVNSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGA 64

Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411
           +TPVARLEPV + G L++NATLHN D I+ L            +R+GD+V+++RAG+VIP
Sbjct: 65  ITPVARLEPVQVAGVLVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIP 113

Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +VV+++++ER  + +P  FP+ CP+C S V R          A  RCTGGL C AQ+ E 
Sbjct: 114 QVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKES 167

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
           LKHFVSR A +++G+G + +D   + E     +  PAD+F L         K+  +   G
Sbjct: 168 LKHFVSRRAMDVDGMGDKIIDQLVERE----YVHTPADLFRLTA------GKLTGLDRMG 217

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
             S  N+ +++ K +  +  RF+++LGIR VG   A  LA Y+ +
Sbjct: 218 PKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGT 262


>gi|332089533|gb|EGI94637.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           boydii 3594-74]
          Length = 417

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 152/411 (36%), Gaps = 49/411 (11%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+   +Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 11  CPAWSPARAQEEIFRQQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 64

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 65  ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 109

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 110 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 167

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 168 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 219

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +    E+      L       V+ A+    + + + + +      P+  DG+V +  +
Sbjct: 220 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 274

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L  V +    +
Sbjct: 275 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLASVMLDDKKV 332

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
               +                    DI  GD++LV  AG+ IP++ D++  
Sbjct: 333 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWR 372


>gi|320185697|gb|EFW60455.1| DNA ligase , LigB [Shigella flexneri CDC 796-83]
          Length = 411

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 152/411 (36%), Gaps = 49/411 (11%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+   +Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 5   CPAWSPARAQEEIFRQQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 59  ---VSEPRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMRERSDLW---------- 103

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 104 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 161

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+++ +              +    N R   +G++ R + +D    L  FV       +
Sbjct: 162 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQ 213

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
           + +    E+      L       V+ A+    + + + + +      P+  DG+V +  +
Sbjct: 214 LMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAK 268

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
               +          W+++ K+        +  I   +G++G ++ VA L  V +    +
Sbjct: 269 EPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLASVMLDDKKV 326

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
               +                    DI  GD++LV  AG+ IP++ D++  
Sbjct: 327 QRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWR 366


>gi|268592261|ref|ZP_06126482.1| DNA ligase B [Providencia rettgeri DSM 1131]
 gi|291312038|gb|EFE52491.1| DNA ligase B [Providencia rettgeri DSM 1131]
          Length = 574

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 102/589 (17%), Positives = 191/589 (32%), Gaps = 69/589 (11%)

Query: 8   PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALK------RRCDAIAHA 61
           P E  + +   +E   L +++   +  Y       I D  YD L       +RC  +   
Sbjct: 41  PCEKQNSKIISQESHRLGKQLQLWNQAYRLAGSSSISDEAYDQLFNLWRSLQRCQQLPEE 100

Query: 62  FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121
            P+     + +                  H IP   L+K+ N  ++  +I      W   
Sbjct: 101 LPE-VLLPEKSQLTM--------------HPIPHTGLKKL-NELEVYSWIETRKNIW--- 141

Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181
                   L+PK+DG  +T+ Y+ GK +    RG+   G +  A    IP IP    +  
Sbjct: 142 --------LQPKVDGVAVTLVYKNGKLISMISRGNSVEGIEWRAKADFIPAIP--KQIKY 191

Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVH 241
             ++ ++GE++   N             +    N RN  +G L R N           + 
Sbjct: 192 SGMLVLQGELFWRMNG--------HIQAKSGGVNARNKIAGWLMRKNEPTALEE---NIG 240

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
                           L  +  +GFP+          + I +        +  LP+  DG
Sbjct: 241 IFIWAWPAGDANPKTQLTLLSEIGFPLAEQY-SHKIENKIQAKQLREYYYQGQLPFATDG 299

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V K   F     L  +++   W I+ K+  +   + +  +   IGRTG ++ VA + P+
Sbjct: 300 IVLKN--FPAPAALAWQSKQNSWAIAWKYPLRSVLSEVTKLQFNIGRTGRISVVASITPI 357

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
           NI    I+                       RD+ VGD++LV  +G   PK+ D+I    
Sbjct: 358 NIDSKTISKVNA-----------GSLSSWEKRDLLVGDKILVSLSGLGSPKIEDVIWRR- 405

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
             + + +   S      S           +   A     G     + +         +  
Sbjct: 406 --EEREYPETSTLKQFHSLSCLTYTEVCSQQFVARLTWLGKQLRMRGISEATWRQWVENH 463

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           N+  L     + +          ++      + + Q  S      + G            
Sbjct: 464 NLTRLTTWLSEQWQSDLSKGKKHQMLVKQLKMAKDQPISLW----LKGLAIPLTKLQVGK 519

Query: 542 INKRRNISLERFIFSLGIRH-VGAEIARSLAK-YYLSYQNFAQEINNII 588
           +     +    ++ S+ +      ++A  LA+    S      ++  I 
Sbjct: 520 VTDIGMLYDPSWVNSINLTKLQKKKLANWLAEPEIESILRILSDMKAIQ 568


>gi|37926542|pdb|1L7B|A Chain A, Solution Nmr Structure Of Brct Domain Of T. Thermophilus:
           Northeast Structural Genomics Consortium Target Wr64tt
          Length = 92

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
           +     ++    V TG L +  R + +  + +LGA V+  +SRKT  ++VG+NPGSKLEK
Sbjct: 2   EKGGEALKGLTFVITGELSR-PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEK 60

Query: 701 AQQLGVKIMNEEQFLFLLQ 719
           A+ LGV  + EE+   LL+
Sbjct: 61  ARALGVPTLTEEELYRLLE 79


>gi|212711586|ref|ZP_03319714.1| hypothetical protein PROVALCAL_02661 [Providencia alcalifaciens DSM
           30120]
 gi|212685688|gb|EEB45216.1| hypothetical protein PROVALCAL_02661 [Providencia alcalifaciens DSM
           30120]
          Length = 564

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 99/610 (16%), Positives = 193/610 (31%), Gaps = 100/610 (16%)

Query: 23  SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82
            L +++   D  Y       + D  YD +  +                P+     +  + 
Sbjct: 52  RLGEQLQEWDRQYQIEGVSEVSDEVYDQILAQWRRGQRC------LNLPDRLPQPV--QP 103

Query: 83  NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
           N     V H IP   L+K+   +++  ++   +  W           L+PK+DG  +T+ 
Sbjct: 104 NTE-RLVKHPIPHTGLKKL-EFKEIAPWLESRHEVW-----------LQPKVDGVAVTLH 150

Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202
           YE G  V    RGDG  G +       I  IP+ +S+     I ++GE++          
Sbjct: 151 YENGHLVSMISRGDGSKGLNWREKADFIQGIPKTISIKQS--IVLQGELFW-----KLNE 203

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262
                 G     N R+  +G L R +        +  V             Q      M 
Sbjct: 204 HVQKIDGG---QNARSKVAGWLMRKDMP-AQVTDDIGVFIWSWPDNSTPMSQQLSELAML 259

Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322
                         +                ++P+  DG+V K   F        RA   
Sbjct: 260 GFDLAQRYSHPIVESQS---IAQWRDHYYSISMPFATDGVVLKS--FPTPSSSAWRANQN 314

Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382
            W I+ K+  K   + ++D+  ++GR+G++  +A +EPV I    ++   L         
Sbjct: 315 SWSIAWKYPLKSIVSDVVDLTFRVGRSGVVNVIANIEPVRIDDKKVSKIRL--------- 365

Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442
                     +D+ VGD++ +  +G   P +  +I  ++                     
Sbjct: 366 --GSLNSWKQKDVLVGDKIQLTLSGHGAPLMEKVIWRQKP-------------------R 404

Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502
           + LN    +   A  C    +         +        NI G+G++    + +      
Sbjct: 405 QYLNTLPLENFHALSCLS-YSTDCASQFVARLTWLGKQLNIRGVGEKTWMVWVEK----- 458

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
                   + L       +   +N L        N  + + + ++     ++  LGI   
Sbjct: 459 --------YGLSELLGWLSPDWQNRL-PKTQQTANALEQLQQAQHQLTANWLKGLGIPLK 509

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
             ++ +  A   LS     +++                   V +   QA+ ++   P   
Sbjct: 510 SEQLEKIAAITTLSEPEQIEKMA------------------VSETRKQALQQWLAAPEIK 551

Query: 623 CAVEALLKEV 632
            A++ L    
Sbjct: 552 QALQTLQNLG 561


>gi|282599848|ref|ZP_05972113.2| NAD-dependent DNA ligase adenylation domain protein [Providencia
           rustigianii DSM 4541]
 gi|282567376|gb|EFB72911.1| NAD-dependent DNA ligase adenylation domain protein [Providencia
           rustigianii DSM 4541]
          Length = 557

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 80/486 (16%), Positives = 159/486 (32%), Gaps = 68/486 (13%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
              L  ++   +  Y       I D  YD L  +                 +     +  
Sbjct: 34  HQRLGNQLQEWNKNYLVDGFSPINDEVYDQLLSKWQQRQRC------LSLSDSLPQ-VPL 86

Query: 81  EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140
            +   L  V H +P   L+K  N+ ++  +I +    W           L+PK+DG  ++
Sbjct: 87  PILTPL--VKHPLPHTGLKK-QNLNEITTWIAKRKEIW-----------LQPKVDGVAVS 132

Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
           + Y+ G+ V    RG+G  G +       I  +P+V+ +     + ++GE++   N+   
Sbjct: 133 LVYDNGQLVSLISRGNGVEGLEWRKKADFILDLPKVIPIKQ--RVILQGELFWKLNN--- 187

Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260
                    +    N R+  +G L R    +        +             Q   L +
Sbjct: 188 -----HVQKQLGGLNARSKVAGWLMRKKLPEKIED---NIGIFIWAWPDGDLQQEVQLSR 239

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           +  +GF ++       T    +    E     + LP+  DG+V K   F        ++ 
Sbjct: 240 LSEIGFDLSKRYSHQVTSIEQIIQRQE-DYFSTPLPFATDGIVLKS--FPTPPSAAWQSN 296

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
              W I+ K+  +   + +  +   +GRTGI+  VA ++PV +    +++  L       
Sbjct: 297 QNSWAIAWKYPLQNIISEITGLKFGVGRTGIVNVVASIKPVTLDAKQVSHVNL------- 349

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
                       +D+ VGD + +  AG  IPKV                      +    
Sbjct: 350 ----GSLNSWKKKDLLVGDHIQLTLAGHGIPKVE--------------------QVIWRV 385

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
             RD                  +         +         I+G+G++    + ++   
Sbjct: 386 AHRDYPETMLLEQFNRWSCFSYSIECLPQFVARLTWLGKQLGIKGVGEKTWQQWAENYGL 445

Query: 501 AFSIRI 506
           +  +  
Sbjct: 446 SQLLEW 451


>gi|77407286|ref|ZP_00784228.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B]
 gi|77174105|gb|EAO77032.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B]
          Length = 223

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 109/240 (45%), Gaps = 28/240 (11%)

Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490
           P  CP C S +V            A RC   L C  Q  ERL HF SRDA NI G G   
Sbjct: 4   PKLCPSCGSELVHFEGE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSL 56

Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
           ++  F     A  I   ADI+ L      S   +  + G  + S T +Y +I   +  S 
Sbjct: 57  VEKLFD----AHLIADVADIYRL------SIENLLTLDGIKEKSATKIYHAIQSSKENSA 106

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E+ +F LGIRHVG++ +R L + + + +  +Q              S+  +  +G +IA+
Sbjct: 107 EKLLFGLGIRHVGSKASRLLLEEFGNLRQLSQASQ----------ESIASIDGLGGVIAK 156

Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           ++  F++       +E L    V+ +      +  +++    +V TG L+K+ R++A+E 
Sbjct: 157 SLHTFFEKEEVDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEK 216


>gi|213024747|ref|ZP_03339194.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 175

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 5/173 (2%)

Query: 98  LEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157
           L+ +++ E    F  R+    +  ++  + +  E K+DG  ++I YE G  V AA RGDG
Sbjct: 1   LDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELKLDGLAVSILYENGVLVSAATRGDG 58

Query: 158 HSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANP 216
            +GED+++ +R I  IP  L  +  P  +EVRGEV++ +  F  +N++    G K +ANP
Sbjct: 59  TTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANP 118

Query: 217 RNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFAKGQYEMLQKMRCLGFP 267
           RNAA+G LR+L+P     R L FF +G+G              L + +  G+ 
Sbjct: 119 RNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQFKAWGYR 171


>gi|1488250|gb|AAB12366.1| DNA ligase [Dichelobacter nodosus]
          Length = 139

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 59/103 (57%), Gaps = 1/103 (0%)

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           +A  I  F+ +  N   + A++      S    +K + + +  K +V TGTL  + R +A
Sbjct: 1   VAADIEHFFADEDNRAVIAAIVPAGVHWSTELPKKIIDAPLLGKTVVITGTLPSLSRAEA 60

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           Q+ +  LGA V++ +SR+TD +++G + GSKL +AQ   V+++
Sbjct: 61  QKRLETLGAKVTSQVSRQTDFLLLGADAGSKLARAQAFSVRLL 103


>gi|149925065|ref|ZP_01913379.1| NAD-dependent DNA ligase LigA [Plesiocystis pacifica SIR-1]
 gi|149814058|gb|EDM73688.1| NAD-dependent DNA ligase LigA [Plesiocystis pacifica SIR-1]
          Length = 669

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 47/73 (64%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  K +V TG L KI+R +A+  +  LGA VS  +S+ TD++ VG+ PGSKL KA +LG+
Sbjct: 247 VNGKTVVVTGKLAKIKRAEAEARLNALGAKVSGSVSKSTDLLFVGEKPGSKLAKANKLGI 306

Query: 707 KIMNEEQFLFLLQ 719
            + +E   + L+ 
Sbjct: 307 PVHDEAALMQLVA 319



 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 51/89 (57%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
             +  + E    + ++ KK+  TG L  + R +A+ ++   GA  ++ +S  TD++I+G 
Sbjct: 327 VKAAPKVETKAVAALKGKKIAVTGKLSLMTRAEAKAHILAAGAKPTSSVSGATDLLILGK 386

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           + GSK   A QLGV+ +NE+QFL ++   
Sbjct: 387 DAGSKQRLAIQLGVETVNEDQFLRMIGDE 415


>gi|9631366|ref|NP_048233.1| ORF MSV162 putative NAD+ dependent DNA ligase, similar to Thermus
           thermophilus SW:P26996 [Melanoplus sanguinipes
           entomopoxvirus]
 gi|4049719|gb|AAC97679.1| ORF MSV162 putative NAD+ dependent DNA ligase, similar to Thermus
           thermophilus SW:P26996 [Melanoplus sanguinipes
           entomopoxvirus]
          Length = 522

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 104/627 (16%), Positives = 210/627 (33%), Gaps = 121/627 (19%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  +S+E   + +  L       ++ YY   + +I D  YD +    + +   +PD    
Sbjct: 17  LNKISLEDISEIIKIL-------NEKYY-EGETLISDEIYDKI---IEYVNKKYPD---- 61

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
              N    KIG E      KV       S  KI++ ++ +KF   I ++       +   
Sbjct: 62  ---NDITKKIGYEPKN---KVKLPYYMGSENKIYDEDE-KKFNNWIEKY------GTSSI 108

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            +  K DG  +     K K      RGDG+ G+D+S  ++          L       +R
Sbjct: 109 IVSVKADGISVLWDIGKNKL---YTRGDGNYGKDISWFLKY-----MNYDLPELSDYVIR 160

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
           GE+ I+K+                    RN  +G +  L   +    +   ++ +G    
Sbjct: 161 GELVINKD------------------KTRNDVAGAINSL-EANRNEDILKEIYFVGYEIL 201

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308
                Q    +K++         ++       +       + ++  + YDIDGLV + + 
Sbjct: 202 NPRFNQENQFKKLKQHKIRHIKAMKYDIEDVSLECLSELYQELKPKMKYDIDGLVIRNNN 261

Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368
            +     G     P W  ++K      +T++L++  QI +     P+A LEP+ +    I
Sbjct: 262 VNDPITDGN----PPWSFAYKPPNTIYTTKVLNVIWQISKQNKYIPIAELEPIKLENKTI 317

Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428
              + +N  ++               I     V ++  G  IPK+V++I      ++   
Sbjct: 318 KRVSCYNAKFV-----------TENGIGTDAIVEIEYRGGAIPKLVNVIKPVTVDESD-- 364

Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
                  I  + +   ++ K   +    +    L+  A   + ++H       NI  L K
Sbjct: 365 --LPDGKIIDNHLYAPIDSKESNIKIISQFFKILSIQAPNKKVIEHLYDNGITNIVELLK 422

Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548
             L     +                                       N   SIN  ++I
Sbjct: 423 SDLTELLDT---------------------------------TKKINKNALHSINIAKSI 449

Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608
            +   + ++    +     + L K Y ++++F                   ++  +  + 
Sbjct: 450 EISLPL-AIAALSIPNLTEKVLEKIYNTHKDFLT-----------TKQDFEKIKGINKLS 497

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS 635
           A+ I    Q  +N   ++  LK +   
Sbjct: 498 AEKIKS--QILKNKNMIDEYLKLIKIK 522


>gi|213027451|ref|ZP_03341898.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
          Length = 79

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
          +E   ++L+ L   + +H+  Y+    P ILD+EYD L R    +    PDL     P+ 
Sbjct: 1  MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57

Query: 74 PLNKIGGEMNLSLFKVTHSIPT 95
          P  ++G     +  ++ H +P 
Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPM 79


>gi|330879795|gb|EGH13944.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 281

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 89/295 (30%), Positives = 139/295 (47%), Gaps = 42/295 (14%)

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           ++ NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A+
Sbjct: 1   MVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENAR 49

Query: 427 PFSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
               P  CP+C S V       R    +T    A +RC G LAC AQ  + + H+VSR A
Sbjct: 50  AVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRA 109

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
            +IEGLG + ++     +     I  PAD++ L+  Q         + GF ++S   L  
Sbjct: 110 MDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQIID------LEGFAEISSNKLLK 159

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           +I   R  +L RFI++LGI  VG E A+ LA+   S     Q +  +          L  
Sbjct: 160 AIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV----------LTY 209

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENK 650
           +P VG  +A  I  F+++  N   ++ALL E    +    +       S+ +E  
Sbjct: 210 LPDVGLEVAYEIHSFFEDEHNRNVIDALLGECGLQLQDQGELGAEFAASTTLEGL 264


>gi|309805852|ref|ZP_07699887.1| NAD-dependent DNA ligase adenylation domain protein [Lactobacillus
           iners LactinV 03V1-b]
 gi|308167761|gb|EFO69905.1| NAD-dependent DNA ligase adenylation domain protein [Lactobacillus
           iners LactinV 03V1-b]
          Length = 109

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           +  LS+ QA+ E+  L +++      YY    P++ D+ YD + ++   +   +P L   
Sbjct: 1   MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
            DP+    ++GG     L KV H  P LS+  ++
Sbjct: 59  -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVF 91


>gi|218659834|ref|ZP_03515764.1| NAD-dependent DNA ligase LigA [Rhizobium etli IE4771]
          Length = 262

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 115/248 (46%), Positives = 161/248 (64%), Gaps = 2/248 (0%)

Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207
            V AA RGDG +GE+V+A IR I  IP  L   +P ++E+RGEVY++K+DFLALN +M A
Sbjct: 1   MVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIRGEVYMAKSDFLALNRQMEA 60

Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266
            G++ Y NPRN A+G LR+L+     +R L FF +  G+ +E+ A  Q+ M+Q  +  GF
Sbjct: 61  EGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMAEMPADTQFGMVQTFKDWGF 120

Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
           PVN  +++ N+   I+++Y+E+   R  L YDIDG+VYKVD   LQ++LG R+RSPRW  
Sbjct: 121 PVNPLMKRLNSVADILTHYDEIGLERPDLDYDIDGVVYKVDSLELQQRLGFRSRSPRWAT 180

Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVAR-LEPVNIGGALITNATLHNEDYIKGLDAS 385
           +HKF  +QA T +  I+IQ+GRTG LTP  R L      G ++TNATLHNE   +G    
Sbjct: 181 AHKFPAEQAFTEVEKIEIQVGRTGALTPGGRGLSRSRSAGVVVTNATLHNEGLHQGHRQQ 240

Query: 386 GKVMRGGR 393
              + G R
Sbjct: 241 RWSVSGRR 248


>gi|312831438|emb|CAP78100.2| Uncharacterized DNA ligase-like protein yicF [Escherichia coli
           LF82]
          Length = 505

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 98/583 (16%), Positives = 182/583 (31%), Gaps = 93/583 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F               +          V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCF---------GNETRDVMMPPLNG--AVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +R I  +P+ +S        ++GE+++ +              +    N R   +G
Sbjct: 99  WTQKVRLISAVPQTVSGP-LANSTLQGEIFLQRKG--------HIQQQMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282
           ++ R   +D    L  FV        +      ++      L       V+ A+    + 
Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPHLMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVR 209

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342
           + + + K      P+  DG+V +  +    +          W+++ K+        +  I
Sbjct: 210 NEWWKAKL-----PFVTDGVVVRAAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
              +G++G ++ VA L PV +    I    +                    DI  GD++L
Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKIQRVNI-----------GSVRRWQEWDIAPGDQIL 311

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           V  AG+ IP++                      +      R           +  C    
Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351

Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
             C  Q + RL    S+    ++G+G+       ++               L   Q  +T
Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
                  G        L+   N  R     R++ ++GI       A   A    S+    
Sbjct: 408 ------PGIAKSKSAQLWHQFNLARQQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
                        W  L   P  G   A+ ++E+ +N +    
Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491


>gi|320193847|gb|EFW68480.1| DNA ligase, LigB [Escherichia coli WV_060327]
          Length = 505

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 97/583 (16%), Positives = 182/583 (31%), Gaps = 93/583 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F               +          V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCF---------GNETRDVMMPPLNG--AVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +R I  +P+ +S        ++GE+++ +              +    N R   +G
Sbjct: 99  WTQKVRLISAVPQTVSGP-LANSTLQGEIFLQRKG--------HIQQQMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282
           ++ R   +D    L  FV        +      ++      L       V+ A+    + 
Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPHLMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVR 209

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342
           + + + K      P+  DG+V +  +    +          W+++ K+        +  I
Sbjct: 210 NEWWKAKL-----PFVTDGVVVRAAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
              +G++G ++ VA L PV +    +    +                    DI  GD++L
Sbjct: 263 QFAVGKSGKISVVASLVPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           V  AG+ IP++                      +      R           +  C    
Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351

Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
             C  Q + RL    S+    ++G+G+       ++               L   Q  +T
Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
                  G        L+   N  R     R++ ++GI       A   A    S+    
Sbjct: 408 ------PGIAKSKSAQLWHQFNLARQQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
                        W  L   P  G   A+ ++E+ +N +    
Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491


>gi|320201328|gb|EFW75909.1| DNA ligase, LigB [Escherichia coli EC4100B]
          Length = 505

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 97/583 (16%), Positives = 183/583 (31%), Gaps = 93/583 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F               +          V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCF---------GSEPRDVMMPPLNG--AVMHPVAHTGVRKMV 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S        ++GE+++ +              +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282
           ++ R + +D    L  FV       ++      E+      L       V+ A+    + 
Sbjct: 150 LMMRQDDSDTLNSLGVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVR 209

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342
           + + + K      P+  DG+V +  +    +          W+++ K+        +  I
Sbjct: 210 NEWWKAKL-----PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
              +G++G ++ VA L PV +    +    +                    DI  GD++L
Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           V  AG+ IP++                      +      R           +  C    
Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351

Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
             C  Q + RL    S+    ++G+G+       ++               L   Q  +T
Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
                  G        L+   N  R     R++ ++GI       A   A    S+    
Sbjct: 408 ------PGIAKSKSAQLWHQFNLARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
                        W  L   P  G   A+ ++E+ +N +    
Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491


>gi|281180692|dbj|BAI57022.1| putative DNA ligase [Escherichia coli SE15]
          Length = 505

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 97/583 (16%), Positives = 182/583 (31%), Gaps = 93/583 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F               +          V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCF---------GNETRDVMIPPLNG--AVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +R I  +P+ +S        ++GE+++ +              +    N R   +G
Sbjct: 99  WTQKVRLISAVPQTVSGP-LANSTLQGEIFLKRKG--------HIQQQMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282
           ++ R   +D    L  FV        +      ++      L       V+ A+    + 
Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPHLMTDRLKDLATAGFTLTQTYTRAVKNADEVAHVR 209

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342
           + + + K      P+  DG+V +  +    +          W+++ K+        +  I
Sbjct: 210 NEWWKAKL-----PFVTDGVVVRAAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
              +G++G ++ VA L PV +    +    +                    DI  GD++L
Sbjct: 263 QFAVGKSGKISVVASLVPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           V  AG+ IP++                      +      R           +  C    
Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351

Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
             C  Q + RL    S+    ++G+G+       ++               L   Q  +T
Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
                  G        L+   N  R     R++ ++GI       A   A    S+    
Sbjct: 408 ------PGIAKSKSAQLWHQFNLARQQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
                        W  L   P  G   A+ ++E+ +N +    
Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491


>gi|209921119|ref|YP_002295203.1| NAD-dependent DNA ligase LigB [Escherichia coli SE11]
 gi|209914378|dbj|BAG79452.1| putative DNA ligase [Escherichia coli SE11]
          Length = 505

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 97/583 (16%), Positives = 183/583 (31%), Gaps = 93/583 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F               +          V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCF---------GSEPRDVMMPPLNG--AVMHPVAHTGVRKMV 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S        ++GE+++ +              +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282
           ++ R + +D    L  FV       ++      E+      L       V+ A+    + 
Sbjct: 150 LMMRQDDSDTLNSLGVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVR 209

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342
           + + + K      P+  DG+V +  +    +          W+++ K+        +  I
Sbjct: 210 NEWWKAKL-----PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
              +G++G ++ VA L PV +    +    +                    DI  GD++L
Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWEEWDIAPGDQIL 311

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           V  AG+ IP++                      +      R           +  C    
Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351

Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
             C  Q + RL    S+    ++G+G+       ++               L   Q  +T
Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
                  G        L+   N  R     R++ ++GI       A   A    S+    
Sbjct: 408 ------PGIAKSKSAQLWHQFNLARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
                        W  L   P  G   A+ ++E+ +N +    
Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491


>gi|148705785|gb|EDL37732.1| replication factor C 1, isoform CRA_a [Mus musculus]
          Length = 1160

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 424 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 483

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 484 SKSDKAAALGTKILDEDGLLDLI 506


>gi|148705786|gb|EDL37733.1| replication factor C 1, isoform CRA_b [Mus musculus]
          Length = 1157

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 420 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 479

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 480 SKSDKAAALGTKILDEDGLLDLI 502


>gi|300907689|ref|ZP_07125317.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 84-1]
 gi|301303881|ref|ZP_07210000.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 124-1]
 gi|300400625|gb|EFJ84163.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 84-1]
 gi|300840844|gb|EFK68604.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 124-1]
 gi|315254034|gb|EFU34002.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 85-1]
          Length = 505

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 96/583 (16%), Positives = 184/583 (31%), Gaps = 93/583 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F               +          V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCF---------GSEPRDVMMPPLNG--AVMHPVAHTGVRKMV 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S        ++GE+++ +              +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282
           ++ R + +D    L  FV       ++ +    E+      L       V+ A+    + 
Sbjct: 150 LMMRQDDSDTLNSLGVFVWAWPDGPQLMSDRLKELATAGFTLTQTYTRAVKNADEVARVR 209

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342
           + + + +      P+  DG+V +  +    +          W+++ K+        +  I
Sbjct: 210 NEWWKAEL-----PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
              +G++G ++ VA L PV +    +    +                    DI  GD++L
Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           V  AG+ IP++                      +      R           +  C    
Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351

Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
             C  Q + RL    S+    ++G+G+       ++               L   Q  +T
Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
                  G        L+   N  R     R++ ++GI       A   A    S+    
Sbjct: 408 ------PGIAKSKSAQLWHQFNLARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
                        W  L   P  G   A+ ++E+ +N +    
Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491


>gi|320191301|gb|EFW65951.1| DNA ligase , LigB [Escherichia coli O157:H7 str. EC1212]
 gi|326339852|gb|EGD63659.1| DNA ligase , LigB [Escherichia coli O157:H7 str. 1125]
          Length = 505

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 97/583 (16%), Positives = 184/583 (31%), Gaps = 93/583 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F               +          V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCF---------VSEPRDVMMPPLNG--AVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S        ++GE+++ +              +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282
           ++ R + +D    L  FV       ++      E+      L       V+ A+    + 
Sbjct: 150 LMMRQDDSDTLNSLGVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVR 209

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342
           + + + K      P+  DG+V +  +    +          W+++ K+       ++  I
Sbjct: 210 NEWWKAKL-----PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAKVKAI 262

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
              +G++G ++ VA L PV +    +    +                    DI  GD++L
Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           V  AG+ IP++                      +      R           +  C    
Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351

Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
             C  Q + RL    S+    ++G+G+       ++               L   Q  +T
Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
                  G        L+   N  R     R++ ++GI       A   A    S+    
Sbjct: 408 ------PGIAKSKSAQLWHRFNLARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
                        W  L   P  G   A+ ++E+ +N +    
Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491


>gi|126331819|ref|XP_001374096.1| PREDICTED: similar to Replication factor C (activator 1) 1, 145kDa
           [Monodelphis domestica]
          Length = 1347

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT  +++G + G 
Sbjct: 528 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTSYLVMGRDSGQ 587

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 588 SKSDKALALGTKIIDEDGLLDLI 610


>gi|323155299|gb|EFZ41482.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli EPECa14]
 gi|323177651|gb|EFZ63235.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli 1180]
          Length = 505

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 97/583 (16%), Positives = 183/583 (31%), Gaps = 93/583 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F               +          V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCF---------VSEPRDVMMPPLNG--AVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S        ++GE+++ +              +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282
           ++ R + +D    L  FV       ++      E+      L       V+ A+    + 
Sbjct: 150 LMMRQDDSDTLNSLGVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVR 209

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342
           + + + K      P+  DG+V +  +    +          W+++ K+        +  I
Sbjct: 210 NEWWKAKL-----PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
              +G++G ++ VA L PV +    +    +                    DI  GD++L
Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           V  AG+ IP++                      +      R           +  C    
Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351

Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
             C  Q + RL    S+    ++G+G+       ++               L   Q  +T
Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
                  G        L+   N  R     R++ ++GI       A   A    S+    
Sbjct: 408 ------PGIAKSKSAQLWHRFNLARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
                        W  L   P  G   A+ ++E+ +N +    
Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491


>gi|460932|gb|AAC52140.1| ISRE-binding protein [Mus musculus]
          Length = 1145

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 408 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 467

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 468 SKSDKAAALGTKILDEDGLLDLI 490


>gi|156359338|ref|XP_001624727.1| predicted protein [Nematostella vectensis]
 gi|156211524|gb|EDO32627.1| predicted protein [Nematostella vectensis]
          Length = 793

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               +   +  E    V TG L  I+R  AQ+ + + G  V+  +S+KT  ++VG + G 
Sbjct: 45  KEIPQGAENCFEGLTFVVTGVLDSIERDHAQDLIQRYGGKVTGSVSKKTSYLLVGRDAGA 104

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SKL KAQ LG K ++E+ FL L+
Sbjct: 105 SKLSKAQTLGTKQLDEDAFLDLI 127


>gi|188219597|ref|NP_035388.2| replication factor C subunit 1 [Mus musculus]
 gi|148705787|gb|EDL37734.1| replication factor C 1, isoform CRA_c [Mus musculus]
          Length = 1131

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 453

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 454 SKSDKAAALGTKILDEDGLLDLI 476


>gi|1022776|gb|AAA79698.1| differentiation specific element binding protein [Mus musculus]
          Length = 1130

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 453

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 454 SKSDKAAALGTKILDEDGLLDLI 476


>gi|405112|gb|AAA21643.1| activator 1 large subunit [Mus musculus]
          Length = 1131

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 453

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 454 SKSDKAAALGTKILDEDGLLDLI 476


>gi|54887426|gb|AAH85173.1| Rfc1 protein [Mus musculus]
          Length = 1132

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 453

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 454 SKSDKAAALGTKILDEDGLLDLI 476


>gi|1703056|sp|P35601|RFC1_MOUSE RecName: Full=Replication factor C subunit 1; AltName:
           Full=A1-P145; AltName: Full=Activator 1 140 kDa subunit;
           Short=A1 140 kDa subunit; AltName: Full=Activator 1
           large subunit; AltName: Full=Activator 1 subunit 1;
           AltName: Full=Differentiation-specific element-binding
           protein; AltName: Full=ISRE-binding protein; AltName:
           Full=Replication factor C 140 kDa subunit; Short=RF-C
           140 kDa subunit; Short=RFC140; AltName: Full=Replication
           factor C large subunit
 gi|457742|emb|CAA51260.1| replication factor C [Mus musculus]
          Length = 1131

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 453

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 454 SKSDKAAALGTKILDEDGLLDLI 476


>gi|257471690|pdb|2K7F|A Chain A, Haddock Calculated Model Of The Complex Between The Brct
           Region Of Rfc P140 And Dsdna
 gi|259090084|pdb|2K6G|A Chain A, Solution Structure Of The Dna Binding Brct Domain From The
           Large Subunit Of Human Replication Factor C
          Length = 109

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 23  KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 82

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 83  SKSDKAAALGTKIIDEDGLLNLI 105


>gi|159164362|pdb|2EBU|A Chain A, Solution Structure Of The Brct Domain From Human
           Replication Factor C Large Subunit 1
          Length = 112

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 13  KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 72

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 73  SKSDKAAALGTKIIDEDGLLNLI 95


>gi|323160743|gb|EFZ46679.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli E128010]
          Length = 505

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 97/583 (16%), Positives = 182/583 (31%), Gaps = 93/583 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F               +          V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCF---------VSEPRDVMMPPLNG--AVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S        ++GE+++ +              +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282
           ++ R + +D    L  FV       ++      E+      L       V+ A+    + 
Sbjct: 150 LMMRQDDSDTLNSLGVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVR 209

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342
           + + + K      P+  DG+V +  +    +          W+++ K+        +  I
Sbjct: 210 NEWWKAKL-----PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
              +G++G ++ VA L PV +    +    +                    DI  GD++L
Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           V  AG+ IP++                      +      R           +  C    
Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351

Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
             C  Q + RL    S+    ++G+G+       ++               L   Q  +T
Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
                  G        L+   N  R     R++ ++GI       A   A    S+    
Sbjct: 408 ------PGIAKSKSAQLWHRFNLARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
                        W  L   P  G   A+ + E+ +N +    
Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVTEWKENAQIKKL 491


>gi|149035369|gb|EDL90073.1| replication factor C 1 [Rattus norvegicus]
          Length = 1131

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT  +++G + G 
Sbjct: 393 KEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKTSYLVMGRDSGQ 452

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 453 SKSDKAAALGTKILDEDGLLDLI 475


>gi|189339249|ref|NP_445999.1| replication factor C (activator 1) 1 [Rattus norvegicus]
          Length = 1131

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT  +++G + G 
Sbjct: 392 KEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKTSYLVMGRDSGQ 451

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 452 SKSDKAAALGTKILDEDGLLDLI 474


>gi|325474100|gb|EGC77288.1| hypothetical protein HMPREF9353_01638 [Treponema denticola F0402]
          Length = 207

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 89/228 (39%), Gaps = 30/228 (13%)

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
              +    D++TL         ++  I   G +S   +Y +++ ++ ISL  FI    I 
Sbjct: 1   MGRVNSITDLYTLTVE------ELAAIDRMGKLSAEKVYKALHSKKEISLTEFIAGFDIE 54

Query: 561 HVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
            +G  +   L +  +       +                  V   G +++  +V      
Sbjct: 55  GIGETMVEKLEEAGFNDLNELLRASEA----------DFANVYQFGQVLSHTLVT----- 99

Query: 620 RNICAVEA----LLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLG 674
            N+  ++     L+ +    I     +     ++     FTG L  ++R +A+  V + G
Sbjct: 100 -NLSILKDEMTGLIDKGYIKIKPQLTSEEGAVLKGLSFCFTGELNTMKRAQAEALVKEKG 158

Query: 675 AVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             V + + +    ++    D+  SK +KAQ+LG  I+ EE FL L+ +
Sbjct: 159 GTVKSSVVKGLSYLVTNTPDSGSSKNKKAQELGTAIITEEAFLNLIGK 206


>gi|323166867|gb|EFZ52606.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           sonnei 53G]
          Length = 505

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 97/583 (16%), Positives = 182/583 (31%), Gaps = 93/583 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F               +          V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCF---------GSEPRDVMMPPLNG--AVMHPVAHTGVRKMV 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S        ++GE+++ +              +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282
           ++ R   +D    L  FV       ++      E+      L       V+ A+    + 
Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVR 209

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342
           + + + K      P+  DG+V +  +    +          W+++ K+        +  I
Sbjct: 210 NEWWKAKL-----PFVTDGVVVRAAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
              +G++G ++ VA L PV +    +    +                    DI  GD++L
Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           V  AG+ IP++                      +      R           +  C    
Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351

Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
             C  Q + RL    S+    ++G+G+       ++               L   Q  +T
Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
                  G        L+   N  R     R++ ++GI       A   A    S+    
Sbjct: 408 ------PGIAKSKSAQLWHQFNLARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
                        W  L   P  G   A+ ++E+ +N +    
Sbjct: 459 FSTEQF-------WQRL---PGTGSGRARQVIEWKENAQIKKL 491


>gi|284008967|emb|CBA75857.1| NAD-dependent DNA ligase LigB [Arsenophonus nasoniae]
          Length = 547

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 94/610 (15%), Positives = 183/610 (30%), Gaps = 122/610 (20%)

Query: 19  KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78
           +E+ ++  E+   D+ YY   + ++ D  YD +       ++    L    D    L   
Sbjct: 48  REIKAINSELKRWDEAYYINGQSLVNDETYDQIFALWKHWSNC---LRLPPDKTNTL--- 101

Query: 79  GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
                      TH +    L+KI   +++ ++I   +  W           L+PK+DG  
Sbjct: 102 -SLPIKGRK--THPVIHTGLKKI-TADEIARWIAGRHEVW-----------LQPKVDGVA 146

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
            T+ Y+KGK      RG+G  G D +     +P IP+ +  +  ++I ++GE++  +   
Sbjct: 147 ATLVYKKGKLAALISRGNGIEGIDWTPKADFLPAIPKTIPNHATQLI-LQGELFWYQTGH 205

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
                          AN RN  +G L R N           +     +            
Sbjct: 206 QQAIA--------GGANARNKVAGWLMRKNLLVQQEE---QIGIFIWSWPDGPSNMQTQF 254

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
            ++   GFP+        T    ++ +         +P+  DG+V K            +
Sbjct: 255 AQLERWGFPLTKRYSHLVTSVDQITQWQRY-YYNQPMPFATDGIVLKQ--LPYTLGQYWQ 311

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
           A    W ++ K+  +    ++  +   IGRTG + P+                       
Sbjct: 312 AGINNWSVAWKYPTQNRVAQVAAVKFNIGRTGKINPII---------------------- 349

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
                           I  GD + +  +G  IPK   I+                  + +
Sbjct: 350 ---------------GILPGDAIQISLSGHGIPKFDKIV--------WQIKQRKMLSVPE 386

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
            +    L+                +   +     +         +EG+ ++      +  
Sbjct: 387 QKNYHQLS------------CFYYSMRCESQFVARLVWLAKQLKMEGINEKGWLALIR-- 432

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
             A  I    D   L   Q T     +   G        +Y      +      ++  LG
Sbjct: 433 --AGKITNLMDWSRLTLEQITEVAMFKANKGKF------IYQQFLSAQKRPFSEWLKGLG 484

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +       ++      LS +     I +                         +V+F +N
Sbjct: 485 VPLPEKLFSKINCWNDLSSKEINSAILSRKQQKK-------------------LVQFIEN 525

Query: 619 PRNICAVEAL 628
                 V+ L
Sbjct: 526 KDVKQLVKVL 535


>gi|260827655|ref|XP_002608780.1| hypothetical protein BRAFLDRAFT_183645 [Branchiostoma floridae]
 gi|229294132|gb|EEN64790.1| hypothetical protein BRAFLDRAFT_183645 [Branchiostoma floridae]
          Length = 756

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 57/95 (60%), Gaps = 3/95 (3%)

Query: 628 LLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +E   ++G  E     E  +     V TG L+ ++RH+A+E V + G  V++ +S++T
Sbjct: 43  LTREGPRALGTKEIPQGQENCLGGLTFVLTGILESMERHEAKELVERYGGKVTSSVSKRT 102

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
             ++VG + G SKL+K  QLG+K ++E+  L L++
Sbjct: 103 SYVVVGRDAGESKLDKVSQLGLKTLDEDGLLELVK 137


>gi|1066815|gb|AAA81558.1| nonamer binding protein [Mus musculus]
          Length = 428

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 336 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 395

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 396 SKSDKAAALGTKILDEDGLLDLI 418


>gi|62129865|gb|AAX67568.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
          Length = 502

 Score =  117 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 98/584 (16%), Positives = 190/584 (32%), Gaps = 91/584 (15%)

Query: 48  YDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDL 107
           YD L  R             S  P  P                H +    + K+ + + +
Sbjct: 2   YDQLSARLVQWQRCVGQDVSS-TPVSP-------PLNGTT--MHPVAHTGVRKLADRQAV 51

Query: 108 RKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACI 167
            +++                  ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  I
Sbjct: 52  EQWMR-----------GRSELWVQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKI 100

Query: 168 RAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL 227
           R IP+IP+           ++GE+++ +            +G     N R+  +G+L R 
Sbjct: 101 RLIPSIPQTTQGA-LANAVLQGEIFLQREG-----HIQQRMGGM---NARSKVAGMLMRQ 151

Query: 228 NPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE 287
           +       L  F+           +   ++ +    L       V+ A+        +  
Sbjct: 152 DNASALNSLGIFIWAWPDGPANMPERLSQLAKAGFSLTNKYTLAVKDASEVERARQSW-- 209

Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347
              + S LP+  DG+V ++ +    +          W+ + K+       ++  I   +G
Sbjct: 210 ---LTSALPFVTDGVVIRMAKEPASQHWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVG 264

Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407
           ++G +T VA L PV +    +    +                    DI  GD++LV  AG
Sbjct: 265 KSGKITVVASLVPVILDDKRVQRVNI-----------GSVKRWEAWDIAPGDQILVSLAG 313

Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
           + IP++ +++   R                         P      +         C  Q
Sbjct: 314 QGIPRLDEVVWRSRERSKPV-------------------PPDSHFNSLTCFYASATCQEQ 354

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
            + RL    SR A  ++G+G+       ++               +      ++ +I N 
Sbjct: 355 FISRLVWLGSRSALGLDGMGEASWRALHQT----------HRFEHIFSWLALTSAQIANT 404

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
            GF       ++   N  R     R+I ++    +    A   A    S++         
Sbjct: 405 PGFAKGKSEQIWRQFNLARRQPFTRWIMAM---DIPLTQAALQASGDRSWEQLLMRTEQH 461

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
                            G+  A  ++++  NP+ I  +   L  
Sbjct: 462 WRQLPAT----------GERRAGRVIDWRDNPQ-IKTLSRWLAA 494


>gi|168050549|ref|XP_001777721.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162670941|gb|EDQ57501.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 850

 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-P 694
                +     + N   V +GTL  ++R +A+  +   G  V+  +S+KTD ++  ++  
Sbjct: 141 EKEVPQGADDALANLTFVISGTLDSLEREEAEHLIKSHGGRVTGSVSKKTDYLLADEDIG 200

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           G K +KA++LGVK + E+    ++++  
Sbjct: 201 GRKSQKAKELGVKFITEDGLFEMIRKTK 228


>gi|332997449|gb|EGK17065.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri K-218]
          Length = 505

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 98/583 (16%), Positives = 182/583 (31%), Gaps = 93/583 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F               +          V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCF---------VSEPRDVMMPPLNG--AVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S        ++GE+++ +              +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282
           ++ R   +D    L  FV       ++      E+      L       V+ A+    + 
Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVR 209

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342
           + + + K      P+  DG+V +  +    +          W+++ K+        +  I
Sbjct: 210 NEWWKAKL-----PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
              +G++G ++ VA L PV +    +    +                    DI  GD++L
Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           V  AG+ IP++                      +      R              C    
Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNPLTCYFAS 351

Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
             C  Q + RL    S+    ++G+G+       ++               L   Q  +T
Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
                  G        L+   N  RN    R++ ++GI       A   A    S+    
Sbjct: 408 ------PGIAKSKSAQLWHQFNLARNQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
                        W  L   P  G   A+ ++E+ +N +    
Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491


>gi|281342306|gb|EFB17890.1| hypothetical protein PANDA_014667 [Ailuropoda melanoleuca]
          Length = 1119

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 395 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 454

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG  I++E+  L L+
Sbjct: 455 SKSDKAAALGTNIIDEDGLLNLI 477


>gi|332997757|gb|EGK17368.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri K-272]
 gi|333013292|gb|EGK32664.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri K-227]
          Length = 505

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 98/583 (16%), Positives = 183/583 (31%), Gaps = 93/583 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F               +          V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCF---------VSEPRDVMMPPLNG--AVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S        ++GE+++ +              +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282
           ++ R   +D    L  FV       ++      E+      L       V+ A+    + 
Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVR 209

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342
           + + + K      P+  DG+V +  +    +          W+++ K+        +  I
Sbjct: 210 NEWWKAKL-----PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
              +G++G ++ VA L PV +    +    +                    DI  GD++L
Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           V  AG+ IP++                      +      R           +  C    
Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351

Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
             C  Q + RL    S+    ++G+G+       ++               L   Q  +T
Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
                  G        L+   N  RN    R++ ++GI       A   A    S+    
Sbjct: 408 ------PGIAKSKSAQLWHQFNLARNQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
                        W  L   P  G   A+ ++E+ +N +    
Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491


>gi|73951876|ref|XP_536259.2| PREDICTED: similar to replication factor C large subunit [Canis
           familiaris]
          Length = 1145

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 453

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG  I++E+  L L+
Sbjct: 454 SKSDKAAALGTNIIDEDGLLNLI 476


>gi|326919292|ref|XP_003205915.1| PREDICTED: replication factor C subunit 1-like [Meleagris
           gallopavo]
          Length = 1212

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 6/121 (4%)

Query: 604 VGDIIAQAIVEFYQNPR--NICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTL 658
           +    A++I       R  N  A  + L    P         +   + +E    V TG L
Sbjct: 421 ISPKKAESISPEDSEKRRSNYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVL 480

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
           + I+R +A+  + + G  V+  +S+KT+ +++G + G SK EKA  LG KI++E+    L
Sbjct: 481 ESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASALGTKIIDEDGLFDL 540

Query: 718 L 718
           +
Sbjct: 541 V 541


>gi|47210904|emb|CAF94208.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 775

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               +   + +E    V TG L+ ++R + +  + + G  V+  +S+KT  ++ G + G 
Sbjct: 9   KEIPQGAENCLEGCVFVLTGVLESMERDETKSLIERYGGKVTGNISKKTTYLVQGRDCGV 68

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SKLEKA+ LG KI++E+  L L+
Sbjct: 69  SKLEKAESLGTKILDEDGLLELI 91


>gi|296237052|ref|XP_002763589.1| PREDICTED: replication factor C subunit 1, partial [Callithrix
           jacchus]
          Length = 827

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 402 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 461

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 462 SKSDKAAALGTKIIDEDGLLNLI 484


>gi|74222286|dbj|BAE26945.1| unnamed protein product [Mus musculus]
 gi|74226849|dbj|BAE27069.1| unnamed protein product [Mus musculus]
          Length = 584

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGHDSGQ 453

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 454 SKSDKAAALGTKILDEDGLLDLI 476


>gi|3342382|gb|AAC40192.1| VIP-receptor-gene repressor protein [Rattus norvegicus]
          Length = 656

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT  +++G + G 
Sbjct: 392 KEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKTSYLVMGRDSGQ 451

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 452 SKSDKAAALGTKILDEDGLLDLI 474


>gi|311262015|ref|XP_003128976.1| PREDICTED: replication factor C subunit 1-like [Sus scrofa]
          Length = 1039

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 320 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 379

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK  KA  LG KI++E+  L L+
Sbjct: 380 SKSGKAAALGTKIIDEDGLLNLI 402


>gi|301779603|ref|XP_002925218.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 1-like
           [Ailuropoda melanoleuca]
          Length = 1146

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 396 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 455

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG  I++E+  L L+
Sbjct: 456 SKSDKAAALGTNIIDEDGLLNLI 478


>gi|313608258|gb|EFR84263.1| DNA ligase, NAD-dependent [Listeria monocytogenes FSL F2-208]
          Length = 70

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 40/66 (60%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            L+K+ R+ A+  +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  + 
Sbjct: 1   KLEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIE 60

Query: 717 LLQQYN 722
            L    
Sbjct: 61  YLPDEG 66


>gi|1399917|gb|AAC60361.1| replication factor C large subunit [Anas platyrhynchos]
          Length = 1145

 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 6/121 (4%)

Query: 604 VGDIIAQAIVEFYQNPR--NICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTL 658
           +    A++++      +  N  A  + L    P         +   + +E    V TG L
Sbjct: 354 ISPKKAESVIPEDSEKKRNNYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVL 413

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
           + I+R +A+  + + G  V+  +S+KT+ +++G + G SK EKA  LG KI++E+    L
Sbjct: 414 ESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASALGTKIIDEDGLFDL 473

Query: 718 L 718
           +
Sbjct: 474 V 474


>gi|302564339|ref|NP_001082960.2| replication factor C subunit 1 [Danio rerio]
          Length = 1147

 Score =  117 bits (292), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +E    V TG L+ ++R +A+  + + G  V+  +SRKT  +++G + G SK EKA+  G
Sbjct: 403 LEGCVFVLTGVLESMERDEAKSLIERYGGKVTGNVSRKTTYLVLGRDSGVSKTEKAESFG 462

Query: 706 VKIMNEEQFLFLL 718
            KI+NE++ L L+
Sbjct: 463 TKIINEDELLDLI 475


>gi|555972|gb|AAB60452.1| replication factor C large subunit [Mus musculus]
          Length = 565

 Score =  117 bits (292), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 453

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 454 SKSDKAAALGTKILDEDGLLDLI 476


>gi|119613328|gb|EAW92922.1| replication factor C (activator 1) 1, 145kDa, isoform CRA_a [Homo
           sapiens]
          Length = 1032

 Score =  117 bits (292), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 281 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 340

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 341 SKSDKAAALGTKIIDEDGLLNLI 363


>gi|194209224|ref|XP_001495351.2| PREDICTED: replication factor C (activator 1) 1, 145kDa [Equus
           caballus]
          Length = 1176

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 425 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 484

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 485 SKSDKAAALGTKIIDEDGLLNLI 507


>gi|114593614|ref|XP_001140603.1| PREDICTED: replication factor C large subunit isoform 2 [Pan
           troglodytes]
          Length = 1031

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 281 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 340

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 341 SKSDKAAALGTKIIDEDGLLNLI 363


>gi|315282736|ref|ZP_07871076.1| DNA ligase, NAD-dependent [Listeria marthii FSL S4-120]
 gi|313613623|gb|EFR87427.1| DNA ligase, NAD-dependent [Listeria marthii FSL S4-120]
          Length = 69

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 40/65 (61%)

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
           L+K+ R+ A+  +  LG  VS  +S+KTD+++ G + GSKL KA++L + I +EE  +  
Sbjct: 1   LEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEY 60

Query: 718 LQQYN 722
           L    
Sbjct: 61  LPDEG 65


>gi|114593610|ref|XP_001140519.1| PREDICTED: replication factor C large subunit isoform 1 [Pan
           troglodytes]
          Length = 1119

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 369 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 428

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 429 SKSDKAAALGTKIIDEDGLLNLI 451


>gi|159029660|emb|CAO87738.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 636

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 50/80 (62%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
           +++  + +  K +V  GT  KI R +A+  +  +G  V+   S  TD I++G  PG KL+
Sbjct: 556 QESAENTLRGKTVVILGTFSKISREQAKSLIINVGGTVTGSPSANTDYILLGKAPGEKLK 615

Query: 700 KAQQLGVKIMNEEQFLFLLQ 719
           KAQ+LG+K ++E QFL +++
Sbjct: 616 KAQKLGIKTLSEAQFLQMVE 635


>gi|141795347|gb|AAI39656.1| Zgc:162875 protein [Danio rerio]
          Length = 529

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +E    V TG L+ ++R +A+  + + G  V+  +SRKT  +++G + G SK EKA+  G
Sbjct: 403 LEGCVFVLTGVLESMERDEAKSLIERYGGKVTGNVSRKTTYLVLGRDSGVSKTEKAESFG 462

Query: 706 VKIMNEEQFLFLL 718
            KI+NE++ L L+
Sbjct: 463 TKIINEDELLDLI 475


>gi|114593616|ref|XP_517154.2| PREDICTED: replication factor C large subunit isoform 5 [Pan
           troglodytes]
          Length = 1123

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLI 479


>gi|410218|gb|AAA16121.1| replication factor C large subunit [Homo sapiens]
          Length = 1148

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLI 479


>gi|325296984|ref|NP_001191676.1| replication factor C subunit 1 isoform 2 [Homo sapiens]
 gi|56757608|sp|P35251|RFC1_HUMAN RecName: Full=Replication factor C subunit 1; AltName:
           Full=Activator 1 140 kDa subunit; Short=A1 140 kDa
           subunit; AltName: Full=Activator 1 large subunit;
           AltName: Full=Activator 1 subunit 1; AltName:
           Full=DNA-binding protein PO-GA; AltName:
           Full=Replication factor C 140 kDa subunit; Short=RF-C
           140 kDa subunit; Short=RFC140; AltName: Full=Replication
           factor C large subunit
 gi|52632416|gb|AAH35297.1| Replication factor C (activator 1) 1, 145kDa [Homo sapiens]
 gi|119613329|gb|EAW92923.1| replication factor C (activator 1) 1, 145kDa, isoform CRA_b [Homo
           sapiens]
 gi|158256656|dbj|BAF84301.1| unnamed protein product [Homo sapiens]
          Length = 1148

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLI 479


>gi|114593608|ref|XP_001140765.1| PREDICTED: replication factor C subunit 1 isoform 4 [Pan
           troglodytes]
          Length = 1148

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLI 479


>gi|32528306|ref|NP_002904.3| replication factor C subunit 1 isoform 1 [Homo sapiens]
 gi|30354564|gb|AAH51751.1| Replication factor C (activator 1) 1, 145kDa [Homo sapiens]
 gi|46430941|gb|AAS94325.1| replication factor C (activator 1) 1, 145kDa [Homo sapiens]
 gi|119613330|gb|EAW92924.1| replication factor C (activator 1) 1, 145kDa, isoform CRA_c [Homo
           sapiens]
 gi|168275744|dbj|BAG10592.1| replication factor C subunit 1 [synthetic construct]
          Length = 1147

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLI 479


>gi|30353858|gb|AAH51786.1| RFC1 protein [Homo sapiens]
 gi|167774195|gb|ABZ92532.1| replication factor C (activator 1) 1, 145kDa [synthetic construct]
          Length = 1148

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLI 479


>gi|323173255|gb|EFZ58884.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli LT-68]
          Length = 505

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 96/582 (16%), Positives = 177/582 (30%), Gaps = 91/582 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F               +          V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCF---------VSEPRDVMMPPLNG--AVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S        ++GE+++ +              +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARTKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282
           ++ R   +D    L  FV       ++      E+      L       V+ A+    + 
Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVR 209

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342
           + + + K      P+  DG+V +  +    +          W+++ K+        +  I
Sbjct: 210 NEWWKAKL-----PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
              +G++G ++ VA L PV +    +    +                    DI  GD++L
Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           V  AG+ IP++ D++                          +    +     A       
Sbjct: 312 VSLAGQGIPRIDDVVWRG--------------AERTKPTPPENRFNSLTCYFASDVCQEQ 357

Query: 463 ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT 522
             S       K  +  D     G         F+                L   Q  +T 
Sbjct: 358 FISRLVWLGSKQVLGLDGIGGAGWRALHQTHRFE---------HIFSWLLLTPEQLQNT- 407

Query: 523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582
                 G        L+   N  RN    R++ ++GI       A   A    S+     
Sbjct: 408 -----PGIAKSKSAQLWHQFNLARNQPFTRWVMAMGI---PLTRAALNASDERSWSQLLF 459

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
                       W  L   P  G   A+ ++E+ +N +    
Sbjct: 460 STEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491


>gi|291385663|ref|XP_002709319.1| PREDICTED: germ line transcription factor 1-like [Oryctolagus
           cuniculus]
          Length = 1152

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 420 KEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 479

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG  I++E+  L L+
Sbjct: 480 SKSDKAAALGTNIIDEDGLLNLI 502


>gi|332996128|gb|EGK15755.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri VA-6]
          Length = 505

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 97/583 (16%), Positives = 182/583 (31%), Gaps = 93/583 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F               +          V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCF---------VSEPRDVMMPPLNG--AVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  +P+ +S        ++GE+++ +              +    N R   +G
Sbjct: 99  WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282
           ++ R   +D    L  FV       ++      E+      L       V+ A+    + 
Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVR 209

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342
           + + + K      P+  DG+V +  +    +          W+++ K+        +  I
Sbjct: 210 NEWWKAKL-----PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
              +G++G ++ VA L PV +    +    +                    DI  GD++L
Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           V   G+ IP++                      +      R           +  C    
Sbjct: 312 VSLGGQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFAS 351

Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
             C  Q + RL    S+    ++G+G+       ++               L   Q  +T
Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
                  G        L+   N  RN    R++ ++GI       A   A    S+    
Sbjct: 408 ------PGIAKSKSAQLWHQFNLARNQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
                        W  L   P  G   A+ ++E+ +N +    
Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491


>gi|296908|emb|CAA80355.1| PO-GA [Homo sapiens]
 gi|2827257|gb|AAB99788.1| DNA binding protein [Homo sapiens]
          Length = 1147

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLI 479


>gi|114593612|ref|XP_001140686.1| PREDICTED: replication factor C large subunit isoform 3 [Pan
           troglodytes]
          Length = 978

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLI 479


>gi|109074009|ref|XP_001091287.1| PREDICTED: replication factor C subunit 1 isoform 3 [Macaca
           mulatta]
          Length = 1148

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLI 479


>gi|332218978|ref|XP_003258636.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 1-like
           [Nomascus leucogenys]
          Length = 1148

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 456

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 457 SKSDKAAALGTKIIDEDGLLNLI 479


>gi|297467831|ref|XP_002705355.1| PREDICTED: germ line transcription factor 1-like, partial [Bos
           taurus]
          Length = 183

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G SK +KA  LG
Sbjct: 6   LEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALG 65

Query: 706 VKIMNEEQFLFLL 718
             I++E+  L L+
Sbjct: 66  TNIIDEDGLLNLI 78


>gi|237800438|ref|ZP_04588899.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|237806426|ref|ZP_04593130.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023297|gb|EGI03354.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331027539|gb|EGI07594.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 70

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 41/70 (58%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           +L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L 
Sbjct: 1   SLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLK 60

Query: 717 LLQQYNTTLR 726
            L +    + 
Sbjct: 61  RLTELGVAVD 70


>gi|313647479|gb|EFS11929.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri 2a str. 2457T]
 gi|332749898|gb|EGJ80310.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri K-671]
 gi|332764151|gb|EGJ94388.1| DNA ligase [Shigella flexneri 2930-71]
 gi|333012849|gb|EGK32226.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           flexneri K-304]
          Length = 505

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 97/583 (16%), Positives = 181/583 (31%), Gaps = 93/583 (15%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F               +          V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCF---------VSEPRDVMMPPLNG--AVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            +  +  I  + + +S        ++GE+++ +              +    N R   +G
Sbjct: 99  WTQKVSLISAVLQTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAG 149

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282
           ++ R   +D    L  FV       ++      E+      L       V+ A+    + 
Sbjct: 150 LMMRQGNSDTLNSLAVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVR 209

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342
           + + + K      P+  DG+V +  +    +          W+++ K+        +  I
Sbjct: 210 NEWWKAKL-----PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAI 262

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402
              +G++G ++ VA L PV +    +    +                    DI  GD++L
Sbjct: 263 QFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQIL 311

Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462
           V  AG+ IP++                      +      R              C    
Sbjct: 312 VSLAGQGIPRID--------------------DVVWRGAERTKPTPPENRFNPLTCYFAS 351

Query: 463 A-CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521
             C  Q + RL    S+    ++G+G+       ++               L   Q  +T
Sbjct: 352 DVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT 407

Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581
                  G        L+   N  RN    R++ ++GI       A   A    S+    
Sbjct: 408 ------PGIAKSKSAQLWHQFNLARNQPFTRWVMAMGI---PLTRAALNASDERSWSQLL 458

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
                        W  L   P  G   A+ ++E+ +N +    
Sbjct: 459 FSTEQF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 491


>gi|149640658|ref|XP_001512744.1| PREDICTED: similar to Replication factor C (activator 1) 1, 145kDa
           [Ornithorhynchus anatinus]
          Length = 1233

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               +   + +E    V TG L+ I+R +A+  + + G  V+  +S++T  +++G + G 
Sbjct: 480 KEIPQGAENCLEGLTFVITGVLESIERDEAKCLIERHGGKVTGNVSKRTSYLVMGRDSGQ 539

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 540 SKSDKASALGTKIIDEDGLLNLI 562


>gi|1335208|emb|CAA49475.1| LLDBP [Homo sapiens]
          Length = 521

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 286 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ 345

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 346 SKSDKAAALGTKIIDEDGLLNLI 368


>gi|57530056|ref|NP_001006456.1| replication factor C subunit 1 [Gallus gallus]
 gi|53130644|emb|CAG31651.1| hypothetical protein RCJMB04_9c6 [Gallus gallus]
          Length = 1147

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 6/121 (4%)

Query: 604 VGDIIAQAIVEFYQNP--RNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTL 658
           +    A++I          N  A  + L    P         +   + +E    V TG L
Sbjct: 356 ISPKKAESISPEDSEKGRNNYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVL 415

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
           + I+R +A+  + + G  V+  +S+KT+ +++G + G SK EKA  LG KI++E+    L
Sbjct: 416 ESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASTLGTKIIDEDGLFDL 475

Query: 718 L 718
           +
Sbjct: 476 V 476


>gi|118118702|ref|XP_001236329.1| PREDICTED: hypothetical protein, partial [Gallus gallus]
          Length = 255

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 6/121 (4%)

Query: 604 VGDIIAQAIVEFYQNPR--NICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTL 658
           +    A++I       R  N  A  + L    P         +   + +E    V TG L
Sbjct: 118 ISPKKAESISPEDSEKRRNNYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVL 177

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
           + I+R +A+  + + G  V+  +S+KT+ +++G + G SK EKA  LG KI++E+    L
Sbjct: 178 ESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASTLGTKIIDEDGLFDL 237

Query: 718 L 718
           +
Sbjct: 238 V 238


>gi|4103934|gb|AAD01890.1| replication factor C [Rattus norvegicus]
          Length = 1104

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-DNPG 695
               K   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT  +++G D+  
Sbjct: 394 KEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKTSYLVMGRDSRQ 453

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK +KA  LG KI++E+  L L+
Sbjct: 454 SKSDKAAALGTKILDEDGLLDLI 476


>gi|224050004|ref|XP_002189560.1| PREDICTED: replication factor C (activator 1) 1, 145kDa
           [Taeniopygia guttata]
          Length = 1142

 Score =  114 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               +   + +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ +++G + G 
Sbjct: 387 KEIPQGAENCLEGLTFVITGVLECIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQ 446

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SK EKA  LG KI++E+    L+
Sbjct: 447 SKCEKASTLGTKIIDEDGLFDLI 469


>gi|157117839|ref|XP_001653061.1| replication factor C large subunit, putative [Aedes aegypti]
 gi|108883325|gb|EAT47550.1| replication factor C large subunit, putative [Aedes aegypti]
          Length = 1047

 Score =  113 bits (283), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 630 KEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           ++   + G  E        +   + V TG L+ ++R +  + +   G  V   +S+K   
Sbjct: 262 RQGPANPGSKEIPKGKPDCLAGLQFVVTGVLESMERDECAQVIKDFGGKVVGSVSKKLTH 321

Query: 688 IIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++VG++ G SKL KA +LG+  ++E+  L L+++ +
Sbjct: 322 MVVGEDAGPSKLAKADELGIPQISEDDLLDLIREKS 357


>gi|313760612|ref|NP_001186496.1| replication factor C (activator 1) 1, 145kDa [Xenopus (Silurana)
           tropicalis]
          Length = 1144

 Score =  113 bits (283), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGV 706
           E    V TG L+ I+R +A+  V + G  V+  +S+KT+ II+G + G SK EKA+  G 
Sbjct: 397 EGLTFVITGVLESIERDEAKSLVERYGGKVTGNVSKKTNYIIMGRDAGVSKQEKAEAFGT 456

Query: 707 KIMNEEQFLFLL 718
           KI++E+  L L+
Sbjct: 457 KILDEDGLLNLI 468


>gi|330969182|gb|EGH69248.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 68

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 33/64 (51%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
              +      +  +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GS
Sbjct: 5   SEKKTVEGLPLAGQTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGS 64

Query: 697 KLEK 700
           KL K
Sbjct: 65  KLTK 68


>gi|327273243|ref|XP_003221390.1| PREDICTED: replication factor C subunit 1-like [Anolis
           carolinensis]
          Length = 1124

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +E    V TG L+ I+R +A+  + + G  V+  +S+KT+ ++ G + G SK EKA  LG
Sbjct: 389 LEGMTFVITGVLESIERDEAKSLIERYGGKVTGNISKKTNFLVKGRDCGLSKCEKASALG 448

Query: 706 VKIMNEEQFLFLLQQ 720
            KI++E+    L+Q+
Sbjct: 449 TKIIDEDGLFDLIQK 463


>gi|321469644|gb|EFX80623.1| hypothetical protein DAPPUDRAFT_318220 [Daphnia pulex]
          Length = 1045

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +P      +     +    +V TG L+ + R +A+  V + G      +S+ T  ++ GD
Sbjct: 287 NPGSKPVPEGAPGCLTGLTIVVTGVLESLHREEAEGLVKKYGGKAPKAVSKNTSYLLAGD 346

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           + G SKL KA+ L V +++E+ FL L+ 
Sbjct: 347 DAGPSKLSKAKDLNVPMLSEDDFLKLIA 374


>gi|166366736|ref|YP_001659009.1| hypothetical protein MAE_39950 [Microcystis aeruginosa NIES-843]
 gi|166089109|dbj|BAG03817.1| unknown protein [Microcystis aeruginosa NIES-843]
          Length = 654

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 51/80 (63%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
           +++  + +  K +V  GT  KI R KA+  +  +G  V++  S  TD I++G  PG KL+
Sbjct: 574 QESAENTLRGKSVVILGTFSKISREKAKSLIINVGGTVTSSPSANTDYILLGKAPGEKLK 633

Query: 700 KAQQLGVKIMNEEQFLFLLQ 719
           KAQ+LG+K ++E QFL +++
Sbjct: 634 KAQKLGIKTLSEAQFLQMVE 653


>gi|89268749|emb|CAJ82643.1| replication factor C (activator 1) 1 [Xenopus (Silurana)
           tropicalis]
          Length = 510

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGV 706
           E    V TG L+ I+R +A+  V + G  V+  +S+KT+ II+G + G SK EKA+  G 
Sbjct: 397 EGLTFVITGVLESIERDEAKSLVERYGGKVTGNVSKKTNYIIMGRDAGVSKQEKAEAFGT 456

Query: 707 KIMNEEQFLFLL 718
           KI++E+  L L+
Sbjct: 457 KILDEDGLLNLI 468


>gi|222616174|gb|EEE52306.1| hypothetical protein OsJ_34316 [Oryza sativa Japonica Group]
          Length = 929

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 6/104 (5%)

Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           P  G  E    +   +     V +GTL  ++R +A + + + G  V+  +S+KT+ ++  
Sbjct: 238 PHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTNYLLAD 297

Query: 692 DNPGS-KLEKAQQLGVKIMNEEQFLFLLQQ---YNTTLRIHDDD 731
           ++ G  K  KA++LGV  + E+    ++++      T+  H  D
Sbjct: 298 EDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSD 341


>gi|218185964|gb|EEC68391.1| hypothetical protein OsI_36544 [Oryza sativa Indica Group]
          Length = 1014

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 6/104 (5%)

Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           P  G  E    +   +     V +GTL  ++R +A + + + G  V+  +S+KT+ ++  
Sbjct: 240 PHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTNYLLAD 299

Query: 692 DNPGS-KLEKAQQLGVKIMNEEQFLFLLQQ---YNTTLRIHDDD 731
           ++ G  K  KA++LGV  + E+    ++++      T+  H  D
Sbjct: 300 EDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSD 343


>gi|115485959|ref|NP_001068123.1| Os11g0572100 [Oryza sativa Japonica Group]
 gi|108864532|gb|ABA94349.2| BRCA1 C Terminus domain containing protein, expressed [Oryza sativa
           Japonica Group]
 gi|113645345|dbj|BAF28486.1| Os11g0572100 [Oryza sativa Japonica Group]
 gi|215697840|dbj|BAG92033.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 1021

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 6/104 (5%)

Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           P  G  E    +   +     V +GTL  ++R +A + + + G  V+  +S+KT+ ++  
Sbjct: 247 PHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTNYLLAD 306

Query: 692 DNPGS-KLEKAQQLGVKIMNEEQFLFLLQQ---YNTTLRIHDDD 731
           ++ G  K  KA++LGV  + E+    ++++      T+  H  D
Sbjct: 307 EDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSD 350


>gi|30314655|dbj|BAC76085.1| replication factor C 110 kDa subunit [Oryza sativa Japonica Group]
          Length = 1021

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 6/104 (5%)

Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           P  G  E    +   +     V +GTL  ++R +A + + + G  V+  +S+KT+ ++  
Sbjct: 247 PHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTNYLLAD 306

Query: 692 DNPGS-KLEKAQQLGVKIMNEEQFLFLLQQ---YNTTLRIHDDD 731
           ++ G  K  KA++LGV  + E+    ++++      T+  H  D
Sbjct: 307 EDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSD 350


>gi|312282245|dbj|BAJ33988.1| unnamed protein product [Thellungiella halophila]
          Length = 933

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           P  G  E    +   +     V +GTL  ++R +A++ + + G  V+  +S+KT  ++  
Sbjct: 165 PHKGEKEVPEGNPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTTYLLCD 224

Query: 692 DN-PGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++  G K EKA++LG K + E+    ++
Sbjct: 225 EDIGGRKSEKAKELGTKFLTEDGLFDMI 252


>gi|170065938|ref|XP_001868075.1| replication factor C large subunit [Culex quinquefasciatus]
 gi|167862647|gb|EDS26030.1| replication factor C large subunit [Culex quinquefasciatus]
          Length = 1042

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 630 KEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           ++   + G  E    +   +   + V TG ++ ++R +  + +   G  V   +S+K   
Sbjct: 254 RQGPANPGSKEIPKGTPTCLAGLQFVVTGVMESMERDECAQVIKDFGGKVVTSVSKKLTH 313

Query: 688 IIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++VG++ G SKL KA +LG+  ++E+Q   L+++
Sbjct: 314 MVVGEDAGPSKLAKADELGIPQISEDQLFDLIRE 347


>gi|19173693|ref|NP_597496.1| DNA REPLICATION FACTOR C SUBUNIT [Encephalitozoon cuniculi GB-M1]
 gi|19170899|emb|CAD26673.1| DNA REPLICATION FACTOR C SUBUNIT [Encephalitozoon cuniculi GB-M1]
          Length = 568

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 2/82 (2%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQL 704
            ++ K  VFTG + KI R  A+  V  LG   +A+ S KT  ++ GDNPG SK++KA++L
Sbjct: 7   PLKGKVFVFTGDM-KISRDDAKTKVMVLGGRCTAVPSSKTTFLVAGDNPGPSKMQKAKEL 65

Query: 705 GVKIMNEEQFLFLLQQYNTTLR 726
           G+K+++EE+F  L++  +  L 
Sbjct: 66  GIKVLDEEEFDSLIKDTSKALD 87


>gi|321264327|ref|XP_003196881.1| DNA replication activator 1 subunit1 (Replication factor C subunit
           1) [Cryptococcus gattii WM276]
 gi|317463358|gb|ADV25094.1| DNA replication activator 1 subunit1 (Replication factor C subunit
           1), putative [Cryptococcus gattii WM276]
          Length = 991

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG ++ + R  AQE V +    V+   S KT  ++VG+N G SKL K ++  
Sbjct: 266 LAGLTFVFTGEMESLGREDAQELVRRYSGKVTTAPSGKTSYVVVGENAGVSKLNKVKEKK 325

Query: 706 VKIMNEEQFLFLLQQ 720
           + +++E++FL L++Q
Sbjct: 326 IPMIDEDEFLELIRQ 340


>gi|159477641|ref|XP_001696917.1| DNA replication factor C complex subunit 1 [Chlamydomonas
           reinhardtii]
 gi|158274829|gb|EDP00609.1| DNA replication factor C complex subunit 1 [Chlamydomonas
           reinhardtii]
          Length = 1182

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           P+ G  E        +  K  V +G L  + R +A +Y+ + G  V+  +S KT  ++VG
Sbjct: 375 PNQGNKEAPRGHPDCLTGKTFVISGVLDSLGREEATDYIKRHGGRVTGAVSGKTSFLVVG 434

Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            + G SK  KA++ G K+++E+    L+
Sbjct: 435 HHTGRSKYRKAREHGTKVIDEDGLFSLI 462


>gi|146229|gb|AAB88710.1| ORF; putative [Escherichia coli]
          Length = 218

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 31/224 (13%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 23  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 76

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 77  ---GSEPRDVMMPPLNG--AVMHPVAHTGVRKMVDKNALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P+ +S        ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQ 179

Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI 232
           GE+++ +              +    N R   +G++ R + +D 
Sbjct: 180 GEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDT 215


>gi|16329814|ref|NP_440542.1| DNA ligase [Synechocystis sp. PCC 6803]
 gi|1652299|dbj|BAA17222.1| DNA ligase [Synechocystis sp. PCC 6803]
          Length = 562

 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 50/87 (57%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
            +     +  +  +  KK+V  GTL  + R +A+  +  +GA  +   S KTD I+VG  
Sbjct: 476 VATVPSNEEGAHPLAEKKVVILGTLNAMNREEAKTRLQNVGAECTGTPSGKTDYIVVGKA 535

Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           PG+KL+KAQ+LG+  ++E QFL LL  
Sbjct: 536 PGAKLKKAQKLGIAQLSEAQFLELLGD 562


>gi|58260802|ref|XP_567811.1| purine nucleotide binding protein [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134117247|ref|XP_772850.1| hypothetical protein CNBK2210 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255468|gb|EAL18203.1| hypothetical protein CNBK2210 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229892|gb|AAW46294.1| purine nucleotide binding protein, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 1001

 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG ++ + R  AQE V +    V+   S KT  ++VG+N G SKL K ++  
Sbjct: 274 LAGLTFVFTGEMESLGREDAQELVRRYSGKVTTAPSGKTSYVVVGENAGVSKLNKVKEKK 333

Query: 706 VKIMNEEQFLFLLQQ 720
           + ++NE++FL L++Q
Sbjct: 334 IPMINEDEFLELIRQ 348


>gi|34764321|ref|ZP_00145153.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27885903|gb|EAA23247.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 68

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 41/65 (63%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K  +FTGTL+   R + +E + +LG    + +S+  D +IVG+  GSKL+KAQ+  +K +
Sbjct: 4   KNFLFTGTLKHFTREQIKEEIEKLGGKNLSSVSKNLDYLIVGEKAGSKLKKAQRSTIKNI 63

Query: 710 NEEQF 714
            EE+ 
Sbjct: 64  TEEEL 68


>gi|300939287|ref|ZP_07153961.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli MS 21-1]
 gi|300455794|gb|EFK19287.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli MS 21-1]
          Length = 209

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 23/190 (12%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S+ +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F +  R 
Sbjct: 23  CPAWSLARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETRD 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                               V H +    + K+ +   L  ++      W          
Sbjct: 83  AMM---------PPLNG--AVMHPVAHTGVSKMADKNALSLWMRERSDLW---------- 121

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +PR +S        ++
Sbjct: 122 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTHKVRLISAVPRTVSGP-LANSTLQ 179

Query: 189 GEVYISKNDF 198
           GE+++ +   
Sbjct: 180 GEIFLKREGH 189


>gi|332084490|gb|EGI89685.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           dysenteriae 155-74]
 gi|332084829|gb|EGI90012.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           boydii 5216-82]
          Length = 195

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 23/190 (12%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
             A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F      
Sbjct: 22  CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF------ 75

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
                    +          V H +    + K+ +   L  ++      W          
Sbjct: 76  ---GNETRDVMMPPLNG--AVMHPVAHTGVRKMADKNALSLWMREHSDLW---------- 120

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +R I  +P+ +S        ++
Sbjct: 121 -VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGP-LANSTLQ 178

Query: 189 GEVYISKNDF 198
           GE+++ +   
Sbjct: 179 GEIFLKREGH 188


>gi|323182437|gb|EFZ67841.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli 1357]
          Length = 469

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 86/511 (16%), Positives = 164/511 (32%), Gaps = 71/511 (13%)

Query: 115 YRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
                          ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  I  +P
Sbjct: 15  KNALSLWMRERSDLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVP 74

Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR 234
           + +S        ++GE+++ +              +    N R   +G++ R + +D   
Sbjct: 75  QTVSGP-LANSTLQGEIFLQREG--------HIQQQMGGINARAKVAGLMMRQDDSDTLN 125

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            L  FV       ++      E+      L       V+ A+    + + + + K     
Sbjct: 126 SLGVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKL---- 181

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
            P+  DG+V +  +    +          W+++ K+        +  I   +G++G ++ 
Sbjct: 182 -PFVTDGVVVRGAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISV 238

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L PV +    +    +                    DI  GD++LV  AG+ IP++ 
Sbjct: 239 VASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID 287

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLK 473
                                +      R           +  C      C  Q + RL 
Sbjct: 288 --------------------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLV 327

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533
              S+    ++G+G+       ++               L   Q  +T       G    
Sbjct: 328 WLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKS 377

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
               L+   N  R     R++ ++GI       A   A    S+                
Sbjct: 378 KSAQLWHQFNLARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF------ 428

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
            W  L   P  G   A+ ++E+ +N +    
Sbjct: 429 -WQQL---PGTGSGRARQVIEWKENAQIKKL 455


>gi|303389467|ref|XP_003072966.1| DNA replication factor C subunit [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302109|gb|ADM11606.1| DNA replication factor C subunit [Encephalitozoon intestinalis ATCC
           50506]
          Length = 566

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQL 704
            ++ K  VFTG + K+ R  A+  V  LG   +   S KT  ++VGDNPG  K++KA +L
Sbjct: 7   PLKGKVFVFTGDM-KMSRDDAKARVMVLGGRCTTAPSSKTSFLVVGDNPGPMKIQKANEL 65

Query: 705 GVKIMNEEQFLFLLQ 719
            +KI+NEE+F+ L++
Sbjct: 66  NIKILNEEEFVKLVE 80


>gi|18376023|emb|CAB91757.2| related to replication factor C protein [Neurospora crassa]
          Length = 1092

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +  K  VFTG L+ I R +AQ  V + G  V+   S KTD +++GD+ G SKL K ++ G
Sbjct: 344 LAGKTFVFTGLLKTIAREEAQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHG 403

Query: 706 VKIMNEEQFLFLL 718
           +K ++EE   +L+
Sbjct: 404 IKTIDEEGLFYLI 416


>gi|164424568|ref|XP_963539.2| hypothetical protein NCU06767 [Neurospora crassa OR74A]
 gi|157070569|gb|EAA34303.2| hypothetical protein NCU06767 [Neurospora crassa OR74A]
          Length = 1086

 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +  K  VFTG L+ I R +AQ  V + G  V+   S KTD +++GD+ G SKL K ++ G
Sbjct: 338 LAGKTFVFTGLLKTIAREEAQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHG 397

Query: 706 VKIMNEEQFLFLL 718
           +K ++EE   +L+
Sbjct: 398 IKTIDEEGLFYLI 410


>gi|242068901|ref|XP_002449727.1| hypothetical protein SORBIDRAFT_05g022200 [Sorghum bicolor]
 gi|241935570|gb|EES08715.1| hypothetical protein SORBIDRAFT_05g022200 [Sorghum bicolor]
          Length = 946

 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 3/92 (3%)

Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           P  G  E    +   +     V +GTL  ++R +A + + + G  V+  +S+KT  ++  
Sbjct: 236 PHKGEKEVPEGAPDCLSGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTSYLLAD 295

Query: 692 DNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++ G  K  KA+ LGV  + E+    L+++  
Sbjct: 296 EDIGGVKSNKAKDLGVPFLTEDGLFDLIRKSK 327


>gi|297812313|ref|XP_002874040.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297319877|gb|EFH50299.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 960

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           P  G  E    +   +     V +GTL  ++R +A++ + + G  ++  +S+KT  ++  
Sbjct: 196 PHKGEKEVPEGTPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSVSKKTTYLLCD 255

Query: 692 DN-PGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++  G K EKA++LG K + E+    ++
Sbjct: 256 EDIGGRKSEKAKELGTKFLTEDGLFDMI 283


>gi|242049958|ref|XP_002462723.1| hypothetical protein SORBIDRAFT_02g030910 [Sorghum bicolor]
 gi|241926100|gb|EER99244.1| hypothetical protein SORBIDRAFT_02g030910 [Sorghum bicolor]
          Length = 1025

 Score =  107 bits (266), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 3/92 (3%)

Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           P  G  E    +   +     V +GTL  ++R +A + + + G  V+  +S+KT  ++  
Sbjct: 251 PHKGEKEVPEGAPDCLSGLTFVISGTLDSLEREEAADLIKRYGGRVTGSISKKTSYLLAD 310

Query: 692 DNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYN 722
           ++ G  K  KA+ LGV  + E+    L+++  
Sbjct: 311 EDLGGVKSNKAKDLGVPFLTEDGLFDLIRKSK 342


>gi|302694127|ref|XP_003036742.1| hypothetical protein SCHCODRAFT_46550 [Schizophyllum commune H4-8]
 gi|300110439|gb|EFJ01840.1| hypothetical protein SCHCODRAFT_46550 [Schizophyllum commune H4-8]
          Length = 862

 Score =  107 bits (266), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
           P          + +     VFTG L    R +A E   + G  V+   S KTD +++GDN
Sbjct: 185 PGSKEVPDGAPNALAGLAFVFTGELSAFSRDEAVELAKRFGGRVTGQPSGKTDYVVLGDN 244

Query: 694 PG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
            G SKL   ++ G+K +NE++FL L+   N   ++  D+
Sbjct: 245 AGDSKLRAIKKHGLKTLNEDEFLALVGSRNKDGKMKVDE 283


>gi|304728|gb|AAA28573.1| transcription factor [Drosophila melanogaster]
          Length = 986

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 635 SIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           + G  E    S   +     V TG L+ ++R +A+  + + G  V  ++ +K   ++VG+
Sbjct: 223 NPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGE 282

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             G  KL  A++L + I++E+    L+++ +
Sbjct: 283 EAGPKKLAVAEELNIPILSEDGLFDLIREKS 313


>gi|62472391|ref|NP_001014605.1| germ line transcription factor 1, isoform B [Drosophila
           melanogaster]
 gi|21483228|gb|AAM52589.1| AT18625p [Drosophila melanogaster]
 gi|61679311|gb|AAX52937.1| germ line transcription factor 1, isoform B [Drosophila
           melanogaster]
          Length = 1008

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 635 SIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           + G  E    S   +     V TG L+ ++R +A+  + + G  V  ++ +K   ++VG+
Sbjct: 223 NPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGE 282

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             G  KL  A++L + I++E+    L+++ +
Sbjct: 283 EAGPKKLAVAEELNIPILSEDGLFDLIREKS 313


>gi|17737765|ref|NP_524229.1| germ line transcription factor 1, isoform A [Drosophila
           melanogaster]
 gi|12644230|sp|P35600|RFC1_DROME RecName: Full=Replication factor C subunit 1; AltName:
           Full=Activator 1 140 kDa subunit; AltName:
           Full=Activator 1 subunit 1; AltName: Full=Germline
           transcription factor 1; AltName: Full=Replication factor
           C large subunit
 gi|2121267|gb|AAB58311.1| replication factor C large subunit [Drosophila melanogaster]
 gi|7296805|gb|AAF52082.1| germ line transcription factor 1, isoform A [Drosophila
           melanogaster]
 gi|28317228|gb|AAO39621.1| GH06471p [Drosophila melanogaster]
          Length = 986

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 635 SIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           + G  E    S   +     V TG L+ ++R +A+  + + G  V  ++ +K   ++VG+
Sbjct: 223 NPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGE 282

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             G  KL  A++L + I++E+    L+++ +
Sbjct: 283 EAGPKKLAVAEELNIPILSEDGLFDLIREKS 313


>gi|213622411|ref|ZP_03375194.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 445

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 91/504 (18%), Positives = 175/504 (34%), Gaps = 70/504 (13%)

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
              ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           
Sbjct: 6   ELWVQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAV 64

Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246
           ++GE+++ +            +G     N R+ A+G+L R +       L  F+      
Sbjct: 65  LQGEIFLQREG-----HIQQRMGGM---NARSKAAGMLMRQDNASALNSLGIFIWAWPDG 116

Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306
                +   ++ +    L    +  V+ A+        +     + S LP+  DG+V ++
Sbjct: 117 PANMPERLSQLAKAGFSLTKKYSLAVKDASEVERARQSW-----LTSALPFVTDGVVIRM 171

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366
            +    +          W+ + K+       ++  I   +G++G +T VA L PV +   
Sbjct: 172 AKEPASQYWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDK 229

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
            +    +                    DI  GD++LV  AG+ IP++ +++   R     
Sbjct: 230 RVQRVNI-----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKP 278

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
                               P      +         C  Q + RL    SR A  ++G+
Sbjct: 279 V-------------------PPGSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGM 319

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           G+       ++               +      ++ +I N  G        ++   N  R
Sbjct: 320 GEASWRALHQT----------HRFEHIFSWLALTSAQIANTPGVAKGKSEQIWRQFNLAR 369

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
             S  R+I ++    +    A   A    S++                          G+
Sbjct: 370 RQSFTRWIMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT----------GE 416

Query: 607 IIAQAIVEFYQNPRNICAVEALLK 630
             A  ++++  NP+ I A+   L 
Sbjct: 417 RRAGRVIDWRNNPQ-INALSRWLA 439


>gi|322695637|gb|EFY87442.1| putative replication factor C protein [Metarhizium acridum CQMa
           102]
          Length = 1062

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG LQ I R +AQ  V + G  V+   S KT  +++GD+ G SKL K +  G
Sbjct: 342 LSGLSFVFTGVLQTIGRDEAQALVKRYGGKVTGQPSSKTSFVVLGDDAGPSKLAKIKSHG 401

Query: 706 VKIMNEEQFLFLLQQ 720
           +K ++E     L+++
Sbjct: 402 IKTIDENGLFDLIRK 416


>gi|255018737|ref|ZP_05290863.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL F2-515]
          Length = 223

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 87/234 (37%), Positives = 137/234 (58%), Gaps = 12/234 (5%)

Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TR 234
            + L     IEVRGE ++ K  F  LN+     G+  +ANPRNAA+G LR+L+     +R
Sbjct: 1   PMKLQKDYSIEVRGEAFMPKRSFQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASR 60

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            L+ F++ +    E+  +     L+ +  LG  VN   R  ++   + +Y +E    R+ 
Sbjct: 61  NLDIFLYAVADFGEMGVETHSAGLEMLETLGLKVNKERRLCSSLEEVYAYIDEWTEKRAD 120

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           L YDIDG+V K++    Q+Q+G   +SPRW I++KF  ++  T+LLDI++ +GRTG++TP
Sbjct: 121 LAYDIDGIVLKLNNLEQQRQMGTTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITP 180

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
            A LEPV + G  ++ A+LHNED           +   +DIR+GD VL+K+AG+
Sbjct: 181 TAVLEPVRVAGTTVSRASLHNED-----------LITEKDIRIGDTVLIKKAGD 223


>gi|322705232|gb|EFY96819.1| putative replication factor C protein [Metarhizium anisopliae ARSEF
           23]
          Length = 1030

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG LQ I R +AQ  V + G  V+   S KT  +++GD+ G SKL K +  G
Sbjct: 308 LSGLSFVFTGVLQTIGRDEAQALVKRYGGKVTGQPSSKTSFVVLGDDAGPSKLAKIKSHG 367

Query: 706 VKIMNEEQFLFLLQQ 720
           +K ++E     L+++
Sbjct: 368 IKTIDENGLFDLIRK 382


>gi|238764311|ref|ZP_04625262.1| DNA ligase B [Yersinia kristensenii ATCC 33638]
 gi|238697462|gb|EEP90228.1| DNA ligase B [Yersinia kristensenii ATCC 33638]
          Length = 243

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 76/195 (38%), Gaps = 22/195 (11%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
               S E+   E++ LE+++   D  Y+Q    ++ D+ YD L+ +              
Sbjct: 26  CTKWSEERMSGEINLLEKQLFLWDVAYHQQGISLLPDNVYDQLQDKLHGWRSCHG---LP 82

Query: 69  EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128
           +  N         +     K  H +    L+K+ +   L  ++      W          
Sbjct: 83  DKKNS-------TLIAGNGKSPHPVAHTGLKKLKDETALIDWMAGRKNLW---------- 125

Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188
            ++PKIDG  +T+ Y+ G       RG+G  G+D +     I  IP+ ++   P ++ ++
Sbjct: 126 -VQPKIDGVAVTLVYQAGNLTQILSRGNGLKGQDWTDKAPFISAIPQYIAAAPP-LLTLQ 183

Query: 189 GEVYISKNDFLALND 203
           GE+++          
Sbjct: 184 GELFLQMEGHQQAQS 198


>gi|327250774|gb|EGE62476.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
           coli STEC_7v]
          Length = 469

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 89/511 (17%), Positives = 167/511 (32%), Gaps = 71/511 (13%)

Query: 115 YRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174
               +          ++PK+DG  +T+ Y  GK   A  RG+G  GED +  +  IP++P
Sbjct: 15  KNALRLWMREHNDLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLIPSVP 74

Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR 234
           + +S  +     ++GE+++ +              +    N R+  +G+L R   +D   
Sbjct: 75  QTVSGPLVN-STLQGEIFLKREG--------HIQQQMGGINARSKVAGLLMRQGNSDTLN 125

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            L  FV      +++       + Q             R  N    +    NE    ++ 
Sbjct: 126 SLGVFVWAWPDGTQLMT---DRLQQLTTAGFTLTQTYTRAVNNADEVERIRNEW--WKAK 180

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
           LP+  DG+V +  +    +          W+++ K+        +  I   +G++G ++ 
Sbjct: 181 LPFVTDGVVVRAAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISV 238

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
           VA L PV +    +    +                    DI  GD++LV  AG+ IP++ 
Sbjct: 239 VASLVPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID 287

Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLK 473
                                +      R           +  C      C  Q + RL 
Sbjct: 288 --------------------NVVWRGTERTKPTPPENRFNSLTCYFASDVCQEQFISRLV 327

Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533
              S+    ++G+G+       ++               L   Q  +T       G    
Sbjct: 328 WLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKS 377

Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
               L+   N  R     R++ ++GI       A   A    S+                
Sbjct: 378 KSAQLWHQFNLARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF------ 428

Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
            W  L   P  G   A+ ++E+ +N +    
Sbjct: 429 -WQQL---PGTGSGRARQVIEWKENAQIKKL 455


>gi|307152927|ref|YP_003888311.1| BRCT domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306983155|gb|ADN15036.1| BRCT domain protein [Cyanothece sp. PCC 7822]
          Length = 753

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 4/121 (3%)

Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRH 664
           A+ + +      N    E L + V+      E   ++     ++ KK V  GTL K+ R 
Sbjct: 633 AETVTDSKTEEENKSEPEKLAQPVAEDTQEIEDKKATPPQNLLKGKKFVIVGTLSKLNRD 692

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           + +  + + G  +++  S KTD I+VG  PG+K +KAQ+     ++E QF+ LL+    +
Sbjct: 693 QVKSIIQEAGGQLTSSPSSKTDYILVGKAPGTKAKKAQKNRAATLSELQFIELLKNSGIS 752

Query: 725 L 725
           +
Sbjct: 753 I 753


>gi|289614472|emb|CBI58756.1| unnamed protein product [Sordaria macrospora]
          Length = 1075

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +  K  VFTG L+ I R  AQ  V + G  V+   S KTD +++GD+ G SKL K ++ G
Sbjct: 335 LAGKTFVFTGLLKTIAREDAQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHG 394

Query: 706 VKIMNEEQFLFLL 718
           +K ++EE   +L+
Sbjct: 395 IKTIDEEGLFYLI 407


>gi|22326948|ref|NP_680188.1| AtRFC1 (replication factor C 1); ATP binding / DNA binding / DNA
           clamp loader/ nucleoside-triphosphatase/ nucleotide
           binding [Arabidopsis thaliana]
 gi|13374860|emb|CAC34494.1| replication factor C large subunit-like protein [Arabidopsis
           thaliana]
 gi|48958527|gb|AAT47816.1| At5g22010 [Arabidopsis thaliana]
 gi|332005585|gb|AED92968.1| replication factor C1 [Arabidopsis thaliana]
          Length = 956

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           P  G  E    +   +     V +GTL  ++R +A++ + + G  ++  +S+KT  ++  
Sbjct: 192 PHKGEKEVPEGTPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSVSKKTTYLLCD 251

Query: 692 DN-PGSKLEKAQQLGVKIMNEEQFLFLL 718
           ++  G K EKA++LG K + E+    ++
Sbjct: 252 EDIGGRKSEKAKELGTKFLTEDGLFDII 279


>gi|224054238|ref|XP_002298160.1| predicted protein [Populus trichocarpa]
 gi|222845418|gb|EEE82965.1| predicted protein [Populus trichocarpa]
          Length = 550

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 4/101 (3%)

Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           P  G  E    +   +     V +GTL  ++R +A++ + + G  V+  +S+KT  ++  
Sbjct: 189 PHKGEKEVPEGAPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTSYLLCD 248

Query: 692 DNP-GSKLEKAQQLGVKIMNEEQ-FLFLLQQYNTTLRIHDD 730
           ++  G K  KA++LG   + E+  F  +L   N+     +D
Sbjct: 249 EDIEGRKSSKAKELGTPFLTEDGLFDKILSSKNSKAPARED 289


>gi|310794495|gb|EFQ29956.1| replication factor RFC1 C terminal domain-containing protein
           [Glomerella graminicola M1.001]
          Length = 1026

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG LQ + R + Q  V + G  V+   S KT  +++GD+ G SKL+K + + 
Sbjct: 307 LSGLTFVFTGVLQTLGREEGQALVKKYGGKVTGAPSSKTSYVVLGDDAGPSKLKKIRDMN 366

Query: 706 VKIMNEEQFLFLLQQ 720
           +K +NEE    L+++
Sbjct: 367 IKTINEEGLFELIRR 381


>gi|328770979|gb|EGF81020.1| hypothetical protein BATDEDRAFT_653 [Batrachochytrium dendrobatidis
           JAM81]
          Length = 696

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG +    R  A + V + G  V    S KT  ++VG++PG SKL+K + L 
Sbjct: 21  LTGLAFVFTGEMPSFSREDATDLVKRYGGRVVGAPSSKTSYVVVGEDPGESKLKKVRDLK 80

Query: 706 VKIMNEEQFLFLL 718
           +K+++E+ F+ L+
Sbjct: 81  LKVLDEDSFVNLI 93


>gi|195343531|ref|XP_002038351.1| GM10782 [Drosophila sechellia]
 gi|194133372|gb|EDW54888.1| GM10782 [Drosophila sechellia]
          Length = 980

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 635 SIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           + G  E    S   +     V TG L+ ++R +A+  + + G  V  ++ +K   ++VG+
Sbjct: 223 NPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGE 282

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727
             G  KL  A +L + I++E+    L+++ +   ++
Sbjct: 283 EAGPKKLAMADELNIPILSEDGLFDLIREKSGNAKL 318


>gi|225435884|ref|XP_002265891.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 921

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-P 694
                +  S  +     V +GTL  ++R +A++ + + G  V+  +S+KT+ ++  ++  
Sbjct: 160 EKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNFLLCDEDIG 219

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLL 718
           G+K  KA++LG   + E+    ++
Sbjct: 220 GNKSAKAKELGTAFLTEDGLFDMI 243


>gi|296083902|emb|CBI24290.3| unnamed protein product [Vitis vinifera]
          Length = 941

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-P 694
                +  S  +     V +GTL  ++R +A++ + + G  V+  +S+KT+ ++  ++  
Sbjct: 172 EKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNFLLCDEDIG 231

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLL 718
           G+K  KA++LG   + E+    ++
Sbjct: 232 GNKSAKAKELGTAFLTEDGLFDMI 255


>gi|198414852|ref|XP_002119468.1| PREDICTED: similar to ISRE-binding protein, partial [Ciona
           intestinalis]
          Length = 568

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +P      K   + +E    V TG    + R + +  V + G  V + +S +T  +I G 
Sbjct: 269 NPGSKEIPKGEKNCMEGLSFVITGVQDSLSREEIKSLVERYGGKVVSAVSGRTSYLITGT 328

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + G SKL KA+Q   KI+ E++FL L+
Sbjct: 329 DAGESKLNKAKQHKTKIIEEDEFLDLI 355


>gi|194898632|ref|XP_001978873.1| GG12593 [Drosophila erecta]
 gi|190650576|gb|EDV47831.1| GG12593 [Drosophila erecta]
          Length = 981

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 635 SIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           + G  E    S   +     V TG L+ ++R +A+  + + G  V  ++ +K   ++VG+
Sbjct: 222 NPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLKYLVVGE 281

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             G  KL  A++L + I++E+    L+++ +
Sbjct: 282 EAGPKKLAVAEELNIPILSEDGLFDLIREKS 312


>gi|330921995|ref|XP_003299650.1| hypothetical protein PTT_10692 [Pyrenophora teres f. teres 0-1]
 gi|311326573|gb|EFQ92247.1| hypothetical protein PTT_10692 [Pyrenophora teres f. teres 0-1]
          Length = 1085

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG LQK  R ++QE V + G  V+   S+KT  +++G + G SKL K + + 
Sbjct: 355 LAGLTFVFTGVLQKWGRTESQELVKRHGGKVTTAPSKKTSYVVLGSDAGYSKLAKIRDMN 414

Query: 706 VKIMNEEQFLFLLQQYNTTLRIHD 729
           +K ++E+    L+++        D
Sbjct: 415 IKTIDEDGLTQLIEKLTAAGNKGD 438


>gi|195568307|ref|XP_002102159.1| GD19753 [Drosophila simulans]
 gi|194198086|gb|EDX11662.1| GD19753 [Drosophila simulans]
          Length = 980

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 635 SIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           + G  E    S   +     V TG L+ ++R +A+  + + G  V  ++ +K   ++VG+
Sbjct: 223 NPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGE 282

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
             G  KL  A +L + I++E+    L+++ +
Sbjct: 283 EAGPKKLAMADELNIPILSEDGLFDLIREKS 313


>gi|71018701|ref|XP_759581.1| hypothetical protein UM03434.1 [Ustilago maydis 521]
 gi|46099339|gb|EAK84572.1| hypothetical protein UM03434.1 [Ustilago maydis 521]
          Length = 950

 Score =  104 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
           N   + A       + G           +    LVFTG L+ I R +A +   + GA ++
Sbjct: 237 NWREMAARRAAGPANPGSKAIPQGKPNCLTGLTLVFTGELESISRDEASDLAKRYGARIT 296

Query: 679 AILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           +  S KT  +IVG+  G  KL+  ++  +K +NE++FL L+
Sbjct: 297 SAPSSKTSYVIVGEGAGPKKLDLIRKNNIKTLNEDEFLDLI 337


>gi|328790808|ref|XP_397246.4| PREDICTED: replication factor C subunit 1 [Apis mellifera]
          Length = 1009

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 3/104 (2%)

Query: 628 LLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +  + + G  +  V +E  +     V TG L  ++R +A+E V Q G  +   +++KT
Sbjct: 263 LQRGGARNPGSKKIPVGAEYCLAGLSFVITGVLDSLEREEAEELVKQYGGRILHQVTKKT 322

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIH 728
           D IIVGD  G SKL KA  L +K ++E+  L L+Q+ + + +I 
Sbjct: 323 DYIIVGDQAGPSKLSKADSLNIKKISEDDLLDLIQEESPSKKIK 366


>gi|312213054|emb|CBX93136.1| similar to chromosome transmission fidelity factor [Leptosphaeria
           maculans]
          Length = 1098

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG LQ+  R +AQE V + G  V+   S+KT+ +++G + G SKL+K + + 
Sbjct: 362 LAGLNFVFTGVLQRWGRTEAQELVKRHGGKVTGAPSKKTNYVVLGSDAGPSKLQKIKDMD 421

Query: 706 VKIMNEEQFLFLLQQYNTTLRIHD 729
           +K ++E+    L+++        D
Sbjct: 422 IKTIDEDGLTLLIEKLTEAGNKGD 445


>gi|158302275|ref|XP_321857.4| AGAP001290-PA [Anopheles gambiae str. PEST]
 gi|157012871|gb|EAA01207.5| AGAP001290-PA [Anopheles gambiae str. PEST]
          Length = 1016

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +P      +   + ++  + V TG L+ ++R +  + +  LG  V   +S+K   ++VGD
Sbjct: 227 NPGSKEIPEGKPNCLQGLQFVITGVLESMERDECAQVIKDLGGKVVGAVSKKCTHMVVGD 286

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + G  K+ +A++LG+  ++E++ L L+
Sbjct: 287 DAGPKKIAQAEELGIVTLSEDELLDLI 313


>gi|195497183|ref|XP_002095995.1| GE25440 [Drosophila yakuba]
 gi|194182096|gb|EDW95707.1| GE25440 [Drosophila yakuba]
          Length = 986

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++P      K  +  +     V TG L+ ++R +A+  + + G  V  ++ +K   +++G
Sbjct: 221 LNPGSKEIPKGSTDCLSGLTFVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLKYLVIG 280

Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +  G  KL  A++L + I++E+    L+++ +
Sbjct: 281 EEAGPKKLAVAEELNIPILSEDGLFDLIREKS 312


>gi|218441295|ref|YP_002379624.1| BRCT domain protein [Cyanothece sp. PCC 7424]
 gi|218174023|gb|ACK72756.1| BRCT domain protein [Cyanothece sp. PCC 7424]
          Length = 783

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 50/93 (53%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
             +    +      I+ KK V  G++ K+ R + +  + + G  V    + KTD I+VG 
Sbjct: 691 DIAEPEKDTKSDHPIQGKKFVILGSIAKLSREQIKSIIQEAGGQVINTPNSKTDYIVVGK 750

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
            PGSKL+KAQ++    ++E QF+ LL++   ++
Sbjct: 751 APGSKLKKAQKIKATNLSEAQFINLLKENGISI 783


>gi|167520484|ref|XP_001744581.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776912|gb|EDQ90530.1| predicted protein [Monosiga brevicollis MX1]
          Length = 554

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707
             K V TG L+ ++R   QE V   G V+   +S++ D ++ GD PG SK+ KA+ L +K
Sbjct: 8   GLKFVITGVLESLEREDVQELVKDHGGVIQKSVSKRVDYVVAGDEPGPSKMSKARDLKLK 67

Query: 708 IMNEEQFLFLL 718
           +++E+    L+
Sbjct: 68  VLDEDGLFELI 78


>gi|313247250|emb|CBY15541.1| unnamed protein product [Oikopleura dioica]
          Length = 432

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +P          + +E    V TG  + + R + +  + + G   +  +S KT  +IVG+
Sbjct: 181 NPGSKEIPNGADNCLEGLTFVATGNGESLGRDEMKSLIQRYGGKFTTSVSGKTSYVIVGE 240

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLL 718
            PG SK++KA++  VK+++E+  L L+
Sbjct: 241 EPGESKIKKAKEKAVKLVDEDFILELI 267


>gi|195452278|ref|XP_002073285.1| GK14054 [Drosophila willistoni]
 gi|194169370|gb|EDW84271.1| GK14054 [Drosophila willistoni]
          Length = 983

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           ++    V TG L+ ++R +A+  + + G  V  ++ +K   ++VG++ G  KL  A++L 
Sbjct: 218 LKGLTFVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLKYLVVGEDAGPKKLAVAEELN 277

Query: 706 VKIMNEEQFLFLLQQYNTTLRIHDDD 731
           + I++E+    L+++ +   +   ++
Sbjct: 278 IPILSEDGLFDLIRELSGQSKGPQEN 303


>gi|198453986|ref|XP_001359419.2| GA10826 [Drosophila pseudoobscura pseudoobscura]
 gi|198132600|gb|EAL28565.2| GA10826 [Drosophila pseudoobscura pseudoobscura]
          Length = 988

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++P      K     ++    V TG L+ ++R +A+  + + G  V  ++ +K   ++VG
Sbjct: 232 LNPGSKEIPKGTPDCLKGLTFVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLMYLVVG 291

Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +  G  KL  A++L V I++E+    L+++ +
Sbjct: 292 EEAGPKKLATAEELNVTILSEDGLFDLIREKS 323


>gi|195152678|ref|XP_002017263.1| GL21622 [Drosophila persimilis]
 gi|194112320|gb|EDW34363.1| GL21622 [Drosophila persimilis]
          Length = 979

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++P      K     ++    V TG L+ ++R +A+  + + G  V  ++ +K   ++VG
Sbjct: 232 LNPGSKEIPKGTPDCLKGLTFVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLMYLVVG 291

Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +  G  KL  A++L V I++E+    L+++ +
Sbjct: 292 EEAGPKKLATAEELNVTILSEDGLFDLIREKS 323


>gi|116205063|ref|XP_001228342.1| hypothetical protein CHGG_10415 [Chaetomium globosum CBS 148.51]
 gi|88176543|gb|EAQ84011.1| hypothetical protein CHGG_10415 [Chaetomium globosum CBS 148.51]
          Length = 1060

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +  K  VFTG L+ I R + Q  V + G  V+   S KTD +++GD+ G SKL K ++ G
Sbjct: 314 LVGKSFVFTGLLKTISREEGQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHG 373

Query: 706 VKIMNEEQFLFLLQ 719
           +K ++EE   +L++
Sbjct: 374 IKTIDEEGLFYLIK 387


>gi|323193166|gb|EFZ78384.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
          Length = 180

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 21/166 (12%)

Query: 14  IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
             +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27  PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74  PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133
           P                H +    + K+ + + + +++                  ++PK
Sbjct: 86  P-------PLNGTT--RHPVAHTGVRKLADRQAVEQWMR-----------GRSELWVQPK 125

Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179
           +DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+    
Sbjct: 126 VDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQG 171


>gi|291298903|ref|YP_003510181.1| BRCT domain-containing protein [Stackebrandtia nassauensis DSM
           44728]
 gi|290568123|gb|ADD41088.1| BRCT domain protein [Stackebrandtia nassauensis DSM 44728]
          Length = 1024

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
           EIE K +V TG+   + R +A + +++LGA+V   +S KTD++  GD  G K +KA  LG
Sbjct: 20  EIEGKTIVLTGSFLAMPRSEAGQRLSELGAIVKGTVSSKTDLVFAGDKAGGKADKALALG 79

Query: 706 VKIMNEEQFLFLLQQYNTT 724
           V +  E   + +L     T
Sbjct: 80  VPVHGEAALMAVLSGEAAT 98


>gi|260951239|ref|XP_002619916.1| hypothetical protein CLUG_01075 [Clavispora lusitaniae ATCC 42720]
 gi|238847488|gb|EEQ36952.1| hypothetical protein CLUG_01075 [Clavispora lusitaniae ATCC 42720]
          Length = 876

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 629 LKEVSPSIGRHEKNVSSEIE------NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
           LK    ++     NV   I          +VFTG L  + R  A+    Q GA V+  +S
Sbjct: 120 LKNKQQNVAAPSGNVELPIAAPNCLGGLTIVFTGVLPNLDRDAAESIAKQYGARVTKSIS 179

Query: 683 RKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +KT ++++G+  G SK++K +   +K ++E+ F+ LL++
Sbjct: 180 KKTSLVVIGEEAGPSKVKKIKDFKIKAISEDGFIELLRR 218


>gi|9964513|ref|NP_064981.1| putative NAD+ dependent DNA ligase [Amsacta moorei entomopoxvirus
           'L']
 gi|9944722|gb|AAG02905.1|AF250284_199 AMV199 [Amsacta moorei entomopoxvirus 'L']
          Length = 532

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 126/396 (31%), Gaps = 60/396 (15%)

Query: 21  LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80
            + LE  I   D+ YY     +I D +YD ++     I + +P+            KIG 
Sbjct: 25  YNDLENIIQTLDNSYYDKEA-LISDKKYDLIRN---FINNKYPN-------ESLCKKIGY 73

Query: 81  EMNLSLFKVTHSIPTLSLEKIW-NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139
                  KV       S  K + +   L  +I          + ++    L  K DG  +
Sbjct: 74  TPED---KVRLKYFMGSENKTYKSDNKLLSWIN---------EYHTNILVLSAKADGISV 121

Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199
               +  K      RGDG  G+D++  I                          + + F 
Sbjct: 122 LWDIKNNK---IYSRGDGKYGKDITHFINYFNFSDDKN--------------INNNDIFK 164

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
              + +           RN  +G +   N  +I +     ++ +          Q E   
Sbjct: 165 NNINFVRGELVIDKPENRNIVAGQI---NRNEIDKETALKIYFVAYEILEPRMTQLEQFH 221

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           K+              +             +    L Y IDG++ + +  +   + G   
Sbjct: 222 KLTENSIRTVKYDSV-DYNISYEQLSEIYNNYTQELSYYIDGIIIRNNNLNPVIKSGN-- 278

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379
             P W I  K  +K   T + +I   I +  I  P A LEP+ I  + I     HN  Y+
Sbjct: 279 --PPWSICFKETDKIYITTVKEIKWDISKKNIYIPKAILEPIIIDNSTINAVACHNAKYV 336

Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
                        + I  G  V + + G VIP + +
Sbjct: 337 -----------IDKKINTGSIVEIVKKGGVIPIINN 361


>gi|50292909|ref|XP_448887.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528200|emb|CAG61857.1| unnamed protein product [Candida glabrata]
          Length = 854

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
                 +   + +    +VFTGTL  I+R  A+    + GA V+  +S+KT ++++GD  
Sbjct: 140 MDVDIPEGQDNCLLGLTIVFTGTLPSIERGAAENLAKRYGARVTKSISKKTSVVVLGDEA 199

Query: 695 G-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           G  KLEK + LG+K ++EE F  L+ 
Sbjct: 200 GPKKLEKIKDLGIKAIDEEGFKQLIA 225


>gi|300856782|ref|YP_003781766.1| putative exonuclease with a BRCT domain [Clostridium ljungdahlii
           DSM 13528]
 gi|300436897|gb|ADK16664.1| putative exonuclease with a BRCT domain [Clostridium ljungdahlii
           DSM 13528]
          Length = 436

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 19/138 (13%)

Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667
           IA     F  N  N   +  +          +  + S+   NK +VFTG L+ + R +A 
Sbjct: 198 IANTKNSFTNNKFNTVKISEIK-----PDNDNIIDTSNPFYNKNVVFTGELKSLGRKEAM 252

Query: 668 EYVTQLGAVVSAILSRKTDIIIVG--DNP-------GSKLEKAQQLG-----VKIMNEEQ 713
           + V  LG  + + +S+KTD +IVG  D          SK EKA +L      +KI+NE +
Sbjct: 253 QKVVNLGGTLKSGVSKKTDYLIVGNQDKSLVGENGISSKEEKAAELNENGSSIKILNESE 312

Query: 714 FLFLLQQYNTTLRIHDDD 731
           FL L++  N      D +
Sbjct: 313 FLELIKTPNKENSFDDSN 330


>gi|50547051|ref|XP_500995.1| YALI0B16918p [Yarrowia lipolytica]
 gi|49646861|emb|CAG83248.1| YALI0B16918p [Yarrowia lipolytica]
          Length = 952

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-S 696
              +   + +     VFTGT+  + R + Q  V + G  V++ +S KT+ +++G++ G  
Sbjct: 246 ELPEAAENCLVGLTFVFTGTMPNLSREEGQAAVKKYGGKVTSSISGKTNCVVLGEDAGPK 305

Query: 697 KLEKAQQLGVKIMNEEQFLFLL 718
           K+E+ ++L  K ++E  FL LL
Sbjct: 306 KIEQIKKLRTKALDEAGFLELL 327


>gi|46105398|ref|XP_380503.1| hypothetical protein FG00327.1 [Gibberella zeae PH-1]
          Length = 1049

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG LQ I R   Q  V + G  V    S KT  +++GD+ G SKL K Q L 
Sbjct: 322 LSGLSFVFTGVLQTISRDDGQALVKRYGGKVVGQPSSKTSFVVLGDDAGPSKLAKIQSLS 381

Query: 706 VKIMNEEQFLFLLQQ 720
           +K ++E     L+++
Sbjct: 382 IKTIDENGLFDLIRK 396


>gi|171689552|ref|XP_001909716.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944738|emb|CAP70849.1| unnamed protein product [Podospora anserina S mat+]
          Length = 912

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +  K  VFTG L+ I R   Q  V + G  V+   S KTD +++GD+ G SKL K ++  
Sbjct: 266 LVGKTFVFTGLLKTISREDGQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHN 325

Query: 706 VKIMNEEQFLFLLQ 719
           +K ++EE   +L++
Sbjct: 326 IKTIDEEGLFYLIK 339


>gi|158336878|ref|YP_001518053.1| hypothetical protein AM1_3746 [Acaryochloris marina MBIC11017]
 gi|158307119|gb|ABW28736.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 1187

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 65/172 (37%), Gaps = 23/172 (13%)

Query: 559  IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
            +        +   +   + +   + +    A                  +A+ +V  ++ 
Sbjct: 1021 LPEQMMAAMKEADQQITTLETQVKAMKKDKAELEKAM-----------KMARDVVSHFEQ 1069

Query: 619  P-RNICAVEALLKE-----------VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
               N+   +  L++            +      E      +  +  V TG L ++   + 
Sbjct: 1070 QVENLTQEKQQLEQQFQMSTSDDPLATVPAVVPESQPGLPLSGQSFVITGKLAQLSYEQV 1129

Query: 667  QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
            +  + + G  ++   S KT  ++VG +PG+KL+KA++  +  ++E+Q + LL
Sbjct: 1130 KTIIQEAGGTINTHPSSKTSYVVVGKDPGNKLKKAEKYSIPQLSEQQLMELL 1181


>gi|156065801|ref|XP_001598822.1| hypothetical protein SS1G_00911 [Sclerotinia sclerotiorum 1980]
 gi|154691770|gb|EDN91508.1| hypothetical protein SS1G_00911 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1047

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               +   + +     VFTG L  I R +  E V + G  ++   S KT+ +++G + G 
Sbjct: 297 AEIPEGAENCLAGLTFVFTGVLNTISRDEGIELVKKYGGKITGAPSSKTNYVVLGSDAGP 356

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719
           SKL K ++L +K ++EE    +++
Sbjct: 357 SKLRKIRELKIKSVDEEGLFAIIK 380


>gi|205364119|gb|ACI04517.1| replication factor C large subunit [Hydra magnipapillata]
          Length = 1116

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +     V TG L+   R +  + + + G  V+  +S KT  IIVG +PG 
Sbjct: 350 KELPKGSDNCLAGLSFVITGVLEAFDRDEIADSIKRYGGKVTTSVSGKTSYIIVGRDPGE 409

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           +K+EKA +   K ++E+ F+ L+
Sbjct: 410 TKIEKALKHKTKQIDEDGFIDLI 432


>gi|196009297|ref|XP_002114514.1| hypothetical protein TRIADDRAFT_27705 [Trichoplax adhaerens]
 gi|190583533|gb|EDV23604.1| hypothetical protein TRIADDRAFT_27705 [Trichoplax adhaerens]
          Length = 716

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAV--VSAILSRKTDIIIVGDNPG-SKLEKAQQ 703
           +     V TG L  I+R  A E +  LG    VS  +S+KT+ ++VG +PG +KLEKA+ 
Sbjct: 6   LSGLVFVITGVLDTIERETAIELIQSLGGKVNVSGSISKKTNYLVVGRDPGLTKLEKAKN 65

Query: 704 LGVKIMNEEQFLFLL 718
              K ++E  F  L+
Sbjct: 66  FSTKQLDENSFYDLI 80


>gi|331246527|ref|XP_003335896.1| replication factor C subunit 1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309314886|gb|EFP91477.1| replication factor C subunit 1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1470

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
           P      +   + +     VFTG L+ + R  AQ    + G  V+   S KT  +++G +
Sbjct: 50  PGSKPIPEGAENCLAGLTFVFTGELESLSREDAQTLAKRYGGRVTTSPSSKTSFVVLGSD 109

Query: 694 PG-SKLEKAQQLGVKIMNEEQFLFLL 718
            G  KLE  ++  +K + E++FL L+
Sbjct: 110 AGPKKLEMIKKHKIKTITEDEFLNLI 135


>gi|33322704|gb|AAQ07086.1|AF496399_1 DNA ligase [Lactobacillus delbrueckii subsp. lactis]
          Length = 116

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 12/123 (9%)

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
           E  +F LGI +VG + A+ +A+ + +    A                L  +  +G  IA+
Sbjct: 4   ELVLFGLGIDNVGRKAAQLIAQKFKNMSKIASA----------SVQELTAIDTIGMTIAE 53

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668
           ++  ++Q       +  L +        G   +   +  + K +V TG L    R +  +
Sbjct: 54  SLTAYFQQEEAKKLLTRLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAEFTK 113

Query: 669 YVT 671
            + 
Sbjct: 114 KLQ 116


>gi|302923420|ref|XP_003053672.1| hypothetical protein NECHADRAFT_30719 [Nectria haematococca mpVI
           77-13-4]
 gi|256734613|gb|EEU47959.1| hypothetical protein NECHADRAFT_30719 [Nectria haematococca mpVI
           77-13-4]
          Length = 1042

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG LQ I R + Q  V + G  V    S KT  +++GD+ G SKL K +  G
Sbjct: 315 LSGLSFVFTGVLQTIGRDEGQALVKRYGGKVVGQPSSKTSFVVLGDDAGPSKLAKIKSHG 374

Query: 706 VKIMNEEQFLFLLQQ 720
           +K ++E     L+++
Sbjct: 375 IKTIDENGLFDLIRK 389


>gi|213421985|ref|ZP_03355051.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 186

 Score =  101 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 84/206 (40%), Positives = 127/206 (61%), Gaps = 21/206 (10%)

Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381
           PRW ++ KF  ++  T + D++ Q+GRTG +TPVARLEPV + G L++NATLHN D I+ 
Sbjct: 1   PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 60

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
           L            +R+GD+V+++RAG+VIP+VV+++++ER  + +P  FP+ CP+C S V
Sbjct: 61  L-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDV 109

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
            R          A  RCTGGL C AQ+ E LKHFVSR A +++G+G + +D   + E   
Sbjct: 110 ERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVERE--- 160

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENI 527
             +  PAD+F L   + T   ++   
Sbjct: 161 -YVHTPADLFRLTAGKLTGLDRMGPK 185


>gi|241111852|ref|XP_002399407.1| replication factor C large subunit, putative [Ixodes scapularis]
 gi|215492969|gb|EEC02610.1| replication factor C large subunit, putative [Ixodes scapularis]
          Length = 706

 Score =  101 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           ++   LV TG L+ I+R   +  + + GA V+  +SR T  ++ G + G +KL KA++  
Sbjct: 6   LKGVTLVITGVLECIERDDTRALLERCGAKVTQSVSRNTTYLVAGRDSGPAKLRKAEECK 65

Query: 706 VKIMNEEQFLFLLQ 719
           VKI++E+ F  L++
Sbjct: 66  VKILDEDGFFELIE 79


>gi|189200012|ref|XP_001936343.1| replication factor C subunit 1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187983442|gb|EDU48930.1| replication factor C subunit 1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 1096

 Score =  101 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG LQK  R ++QE V + G  V+   S+KT  +++G + G SKL K + + 
Sbjct: 353 LAGLNFVFTGVLQKWGRTESQELVKRHGGKVTTAPSKKTSYVVLGSDAGPSKLAKIRDMN 412

Query: 706 VKIMNEEQFLFLLQQYNTTLRIHD 729
           +K ++E+    L+++        D
Sbjct: 413 IKTIDEDGLTQLIEKLTAAGNKGD 436


>gi|303283302|ref|XP_003060942.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457293|gb|EEH54592.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 949

 Score =  101 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +E    V +G L  ++R +A++++ + G  V++ +S KT  ++VG + G SK  KA+ +G
Sbjct: 224 LEGCTFVVSGVLDSLERDEAEDFIKRHGGKVTSAVSGKTTYLLVGMDCGKSKYAKAKSVG 283

Query: 706 VKIMNEEQFLFL---LQQYNTTLRIHDD 730
             +M+E+    +   L +      +  +
Sbjct: 284 TPLMDEDGLFAMVEALAEEAAKNPVKTE 311


>gi|221101530|ref|XP_002169845.1| PREDICTED: similar to replication factor C large subunit, partial
           [Hydra magnipapillata]
          Length = 932

 Score =  101 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               K   + +     V TG L+   R +  + + + G  V+  +S KT  IIVG +PG 
Sbjct: 351 KELPKGSDNCLAGLSFVITGVLEAFDRDEIADSIKRYGGKVTTSVSGKTSYIIVGRDPGE 410

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           +K+EKA +   K ++E+ F+ L+
Sbjct: 411 TKIEKALKHKTKQIDEDGFIDLI 433


>gi|319411789|emb|CBQ73832.1| related to replication factor C protein [Sporisorium reilianum]
          Length = 954

 Score =  101 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 3/101 (2%)

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
           N   + A       + G  +    +   +    LVFTG L  I R +A +   + GA ++
Sbjct: 243 NWREMAARRAAGPSNPGSKDIPQGAPNCLAGLTLVFTGELTSISRDEATDLAKRYGARIT 302

Query: 679 AILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
              S KT  +IVG+  G  KLE  ++  ++ ++E+ FL L+
Sbjct: 303 GAPSSKTSYVIVGEGAGPKKLESIKKNKIETLDEDAFLDLI 343


>gi|325118994|emb|CBZ54546.1| putative replication factor c subunit [Neospora caninum Liverpool]
          Length = 1128

 Score =  100 bits (249), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 18/96 (18%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---DN-----P 694
             S    K  VFTG L  + R +A   V   G   ++ +S KTD ++ G   ++      
Sbjct: 442 SKSSFAGKTFVFTGVLDSMGRDEAVAAVVGNGGRCTSAVSGKTDYLVAGSLLEDGRDVTT 501

Query: 695 GSKLEKAQQL----------GVKIMNEEQFLFLLQQ 720
           GSK  KA QL           +KI++E++FL +L +
Sbjct: 502 GSKYRKALQLMQDGSAKQKASLKILHEQEFLAMLPE 537


>gi|242216981|ref|XP_002474294.1| predicted protein [Postia placenta Mad-698-R]
 gi|220726586|gb|EED80531.1| predicted protein [Postia placenta Mad-698-R]
          Length = 731

 Score =  100 bits (248), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L  + R +A E   + G  V+   S KT  +++G + G SKL   ++  
Sbjct: 117 LAGLTFVFTGELSSLSRDEAIELAKRHGGRVTGQPSSKTSFVVLGSDAGPSKLAAIKKNN 176

Query: 706 VKIMNEEQFLFLLQ 719
           +  ++E+ FL L+ 
Sbjct: 177 LTTLDEDSFLQLIA 190


>gi|126660216|ref|ZP_01731333.1| DNA ligase [Cyanothece sp. CCY0110]
 gi|126618518|gb|EAZ89270.1| DNA ligase [Cyanothece sp. CCY0110]
          Length = 524

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 48/83 (57%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
            + KKLV  G+L  + R  A+  V Q G  +++  S KTD ++VG NPG KL+KAQ+LG+
Sbjct: 442 FDGKKLVVVGSLDSMNRETAKSLVQQAGGTLTSSPSSKTDYVVVGKNPGDKLKKAQKLGI 501

Query: 707 KIMNEEQFLFLLQQYNTTLRIHD 729
             ++E QFL  L     T    +
Sbjct: 502 SQLSENQFLEALATVGITETNPE 524


>gi|312371248|gb|EFR19483.1| hypothetical protein AND_22348 [Anopheles darlingi]
          Length = 1111

 Score = 99.9 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +P      +   + +E  + V TG L+ ++R +  + +  LG  V   +S+K   ++VGD
Sbjct: 267 NPGSKAIPEGKPNCLEGLQFVITGVLESMERDECAQVIKDLGGKVVGAVSKKVTHMVVGD 326

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           + G  KL +A+ LG+  ++E+    L+++ +
Sbjct: 327 DCGPKKLSQAEDLGIPTLSEDALFDLIREKS 357


>gi|322778907|gb|EFZ09323.1| hypothetical protein SINV_15414 [Solenopsis invicta]
          Length = 1027

 Score = 99.9 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 628 LLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +  + + G  E    +   +     + TG L  ++R++A++ + +        +S K 
Sbjct: 294 LQRGGARNPGSKEIPTGATNCLAGISFLITGVLDSLERNEAEDLIRKYSGRTVNTVSSKV 353

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + +IVGD  G +KL KA  LG+K ++E+  L ++
Sbjct: 354 NYVIVGDEAGPAKLTKANSLGIKQISEDDLLEMI 387


>gi|194746572|ref|XP_001955754.1| GF18917 [Drosophila ananassae]
 gi|190628791|gb|EDV44315.1| GF18917 [Drosophila ananassae]
          Length = 982

 Score = 99.9 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++P      K   + +     + TG L+ ++R +A+  + + G  V  ++ +K   ++VG
Sbjct: 235 LNPGSKEIPKGTPNCLSGITFLVTGVLESMEREEAESVIKEYGGRVMTVVGKKLQYLVVG 294

Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +  G  KL  A++L + I++E+    L+++ +
Sbjct: 295 EEAGPKKLAVAEELNIPILSEDGLFDLIREKS 326


>gi|156087871|ref|XP_001611342.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154798596|gb|EDO07774.1| conserved hypothetical protein [Babesia bovis]
          Length = 944

 Score = 99.9 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
           KEV+P    +      ++   + VFTG L  I R    E V  LG + +  +S KT+ ++
Sbjct: 299 KEVTPHGASNVNKE--KVVGMRFVFTGVLDAIDRDSVVELVRSLGGLTTGSVSSKTNYLV 356

Query: 690 VGDN--------PGSKLEKAQQL------GVKIMNEEQFLFLLQQYNTTLRI 727
            G+          GSK +KA +       G++++NE +FL L+   N + R+
Sbjct: 357 YGEKLEDGRHYTTGSKYKKALEFNKTKDAGIQLLNESEFLALIDYQNVSSRL 408


>gi|242209061|ref|XP_002470379.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730549|gb|EED84404.1| predicted protein [Postia placenta Mad-698-R]
          Length = 697

 Score = 99.5 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L  + R +A E   + G  V+   S KT  +++G + G SKL   ++  
Sbjct: 15  LTGLTFVFTGELSSLSRDEAIELAKRHGGRVTGQPSSKTSFVVLGSDAGPSKLAAIKKNN 74

Query: 706 VKIMNEEQFLFLLQ 719
           +  ++E+ FL L+ 
Sbjct: 75  LTTLDEDSFLQLIA 88


>gi|330884612|gb|EGH18761.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 52

 Score = 99.5 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
           +  V TG+L+++ R  A+E +  LGA VS  +S KT  ++ G   GSKL
Sbjct: 1   QTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKL 49


>gi|150864993|ref|XP_001384033.2| hypothetical protein PICST_35815 [Scheffersomyces stipitis CBS
           6054]
 gi|149386249|gb|ABN66004.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 764

 Score = 99.5 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKL 698
            +   + +    +VFTG L ++ R  ++    + GA V+  +S KT ++++GD  G SK+
Sbjct: 45  PEAQPNCLSGLTIVFTGVLPRLDRDTSENLAKRYGAKVTKSISGKTSLVVIGDEAGPSKI 104

Query: 699 EKAQQLGVKIMNEEQFLFLLQ 719
           +K + L +K +NE+ F+ LLQ
Sbjct: 105 KKIKSLHIKAINEDGFIQLLQ 125


>gi|221052935|ref|XP_002257842.1| replication factor C subunit 1 [Plasmodium knowlesi strain H]
 gi|193807674|emb|CAQ38378.1| replication factor C subunit 1, putative [Plasmodium knowlesi
           strain H]
          Length = 900

 Score = 99.5 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 14/99 (14%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSK 697
              + K V TG  +   R + Q  + + G  V + +S KT  +I G+        N G K
Sbjct: 191 PFHSLKFVLTGVFKNFSRDELQSKIKEHGGNVMSAVSSKTHYLIHGEYLEDGRMYNEGKK 250

Query: 698 LEKAQQL------GVKIMNEEQFLFLLQQYNTTLRIHDD 730
            +KA ++       +KI+NEE+FL +L +        +D
Sbjct: 251 YQKALEVQKMSKCNIKILNEEEFLQMLPEEKNKTSKWED 289


>gi|297520938|ref|ZP_06939324.1| NAD-dependent DNA ligase LigB [Escherichia coli OP50]
          Length = 312

 Score = 99.5 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 62/331 (18%), Positives = 127/331 (38%), Gaps = 38/331 (11%)

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H +    + K+ +   L  ++      W           ++PK+DG  +T+ Y  GK 
Sbjct: 7   VMHPVAHTGVRKMVDKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKL 55

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
             A  RG+G  GED +  +  I  +P+ +S        ++GE+++ +             
Sbjct: 56  NKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQ 106

Query: 209 GRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268
            +    N R   +G++ R + +D    L  FV       ++ +    E+      L    
Sbjct: 107 QQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLMSDRLKELATAGFTLTQTY 166

Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
              V+ A+    + + + + +      P+  DG+V +  +    +          W+++ 
Sbjct: 167 TRAVKNADEVARVRNEWWKAEL-----PFVTDGVVVRAAKEPESRHW--LPGQAEWLVAW 219

Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
           K+        +  I   +G++G ++ VA L PV +    +    +               
Sbjct: 220 KYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVR 268

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
                DI  GD++LV  AG+ IP++ D++  
Sbjct: 269 RWQEWDIAPGDQILVSLAGQGIPRIDDVVWR 299


>gi|213972533|ref|NP_001135428.1| germ line transcription factor 1 [Nasonia vitripennis]
          Length = 1100

 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +P      +     + N   + TG L  ++R +A+E +T+ G  +   +S+K + II+G+
Sbjct: 321 NPGSKEIPEGAEQCLANLSFLITGVLDSLERGEAEELITKYGGRMLHSVSKKLNYIIIGE 380

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLL 718
             G SKL KA+ L +K ++E+  L L+
Sbjct: 381 EAGPSKLAKAESLNIKKISEDGLLELI 407


>gi|256062935|ref|XP_002570360.1| DNA ligase NAD-dependent [Schistosoma mansoni]
 gi|227294819|emb|CAY18406.1| DNA ligase, NAD-dependent, putative [Schistosoma mansoni]
          Length = 311

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 102/267 (38%), Positives = 140/267 (52%), Gaps = 21/267 (7%)

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
           +V KVD+  LQ+ LG  AR+PRW +++KF  ++ASTRL  I+ Q+GRTG LTPVARL PV
Sbjct: 1   MVVKVDDRRLQQDLGFVARAPRWAVAYKFPAQEASTRLEAIEWQVGRTGALTPVARLAPV 60

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
           ++GG +++NATLHN D +  L           D+R GD V++ RAG+VIPKV+  + ++ 
Sbjct: 61  SVGGVVVSNATLHNIDEVHRL-----------DLRAGDTVVIYRAGDVIPKVMRRLDDDG 109

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
           H    P + P  CP+C S VVR             RC+ GL C AQ+ E L+HF SR A 
Sbjct: 110 HAARAPVALPDACPVCASAVVRPEGE------VVARCSAGLFCPAQRKEALRHFASRRAM 163

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
           +IEGLG++ +D        A  +  PADI+ L   Q     ++                 
Sbjct: 164 DIEGLGEKWVDLMVD----AGLLHTPADIYRLSAEQLLQLPRMXXXXARLAHPTRGGPGR 219

Query: 542 INKRRNISLERFIFSLGIRHVGAEIAR 568
                     R   S G    GA  AR
Sbjct: 220 CRPSVCAGPARARRSAGSAAPGAGRAR 246


>gi|290991775|ref|XP_002678510.1| replication factor C large subunit [Naegleria gruberi]
 gi|284092123|gb|EFC45766.1| replication factor C large subunit [Naegleria gruberi]
          Length = 994

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +++K  V TG ++ + R + ++ + Q G V+   +S +T  ++VGD PG SK++K ++  
Sbjct: 279 LKDKSFVITGQMESLDRDEMEDLIKQYGGVIRGNVSGRTSFVVVGDGPGESKMKKVREHK 338

Query: 706 VKIMNEEQFLFLLQQYNTTLRIHDDD 731
            K ++E+  L ++ + N + +   D+
Sbjct: 339 TKQLSEDDLLEMIAKSNPSGKDSMDE 364


>gi|195396041|ref|XP_002056641.1| GJ11052 [Drosophila virilis]
 gi|194143350|gb|EDW59753.1| GJ11052 [Drosophila virilis]
          Length = 964

 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++P      K     ++    + TG L+ ++R +A   +   G  V  ++ +K + ++VG
Sbjct: 209 LNPGSKEIPKGAPDCLKGLTFLVTGILESMERDEAASVIKGFGGRVMTVVGKKLNYLVVG 268

Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  G  KL +A++  V I++E+    L+++
Sbjct: 269 EEAGPKKLAQAEEHNVTIISEDGLFDLIRE 298


>gi|164658055|ref|XP_001730153.1| hypothetical protein MGL_2535 [Malassezia globosa CBS 7966]
 gi|159104048|gb|EDP42939.1| hypothetical protein MGL_2535 [Malassezia globosa CBS 7966]
          Length = 850

 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 6/113 (5%)

Query: 617 QNPRNICAVEAL---LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVT 671
            +P N+   + +         + G       +   +    LVFTG L  I R  A +   
Sbjct: 124 DSPSNVPVWKQMAQRRAAGPVAPGSKAIPEGAPNCLAGLTLVFTGELSSISREDAIDLAK 183

Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
           + GA V+   S KT  +++GD  G  KLE  Q+  +K ++E+ FL L+ +   
Sbjct: 184 RYGAKVTTAPSSKTSYVVLGDGAGAKKLETIQKNKLKTVDEDGFLALIAERGA 236


>gi|67467166|ref|XP_649703.1| Activator 1 140 kDa subunit [Entamoeba histolytica HM-1:IMSS]
 gi|56466194|gb|EAL44317.1| Activator 1 140 kDa subunit, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 718

 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQ 702
            +E + K  V TG   ++ R + +EY+   G  V+  +S KT ++I G+  G SK+EKA+
Sbjct: 130 ENEFQKKNFVLTGVYDELDRDEMKEYIISFGGNVATSISGKTAVLIAGEEAGPSKIEKAK 189

Query: 703 QLGVKIMNEEQFLFLLQQY 721
           + G+ I +E+     ++Q 
Sbjct: 190 EKGIPIWSEDDVFNYVKQK 208


>gi|239995022|ref|ZP_04715546.1| NAD-dependent DNA ligase [Alteromonas macleodii ATCC 27126]
          Length = 70

 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72
          S+EQA++++ +L   ++ ++  YY    P + D+ YD   +   A+   +P L   + PN
Sbjct: 4  SLEQAKQQIETLRNTLNEYNYQYYVMDDPSVPDAVYDRDMQALIALEKQYPTL---QSPN 60

Query: 73 GPLNKIGGEM 82
           P  K+GG  
Sbjct: 61 SPSQKVGGAA 70


>gi|241951560|ref|XP_002418502.1| replication factor C subunit, putative [Candida dubliniensis CD36]
 gi|223641841|emb|CAX43803.1| replication factor C subunit, putative [Candida dubliniensis CD36]
          Length = 886

 Score = 97.9 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 8/108 (7%)

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672
           V F+        + A   E + +     +   + +    +VFTG +  + R  A++   Q
Sbjct: 161 VNFFA-------LNAARNETTQTAVDLPEAQPNCLMGLTIVFTGQMPNLDRGTAEQTAKQ 213

Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            GA V+  +S KT ++++G + G SK++K +QL +K ++E  F+ LL+
Sbjct: 214 YGAKVTKSISGKTSLVVLGADAGPSKVQKIKQLKIKAIDEAGFIKLLE 261


>gi|295135414|ref|YP_003586090.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
 gi|294983429|gb|ADF53894.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
          Length = 282

 Score = 97.9 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQ 702
           S  +   + V +G  Q   R + Q+ + Q G  ++  +S  T+ ++ G   G SKL KA+
Sbjct: 204 SQLLSGLRFVISGNFQHFSRIEMQKIIVQNGGRITGSVSGLTNYLVCGSQAGNSKLSKAK 263

Query: 703 QLGVKIMNEEQFLFLL 718
             G K+++E Q L +L
Sbjct: 264 LNGTKLISENQLLEIL 279


>gi|254566547|ref|XP_002490384.1| Replication factor C subunit [Pichia pastoris GS115]
 gi|238030180|emb|CAY68103.1| Replication factor C subunit [Pichia pastoris GS115]
 gi|328350779|emb|CCA37179.1| Replication factor C subunit 1 [Pichia pastoris CBS 7435]
          Length = 908

 Score = 97.2 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +    +VFTG +  I R +A+E   + GA V+  +S+KT ++++G   G SK++K +   
Sbjct: 223 LIGLTMVFTGVMPTIDRTQAEELAKRYGAKVTKSVSKKTSVVVLGSEAGPSKVKKIKDFK 282

Query: 706 VKIMNEEQFLFLLQ 719
           +K ++E+ F+ L++
Sbjct: 283 IKAIDEDGFITLIK 296


>gi|328863808|gb|EGG12907.1| hypothetical protein MELLADRAFT_46497 [Melampsora larici-populina
           98AG31]
          Length = 937

 Score = 97.2 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 13/98 (13%)

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
            +    + G  E        +     VFTG L  + R +AQ    + G  V+   S KT 
Sbjct: 206 QRAGPSAPGSKEIPEGQPNCLAGLTFVFTGELDSLSREEAQTLCKRYGGRVTTSPSSKTT 265

Query: 687 IIIVGDNPGSKLEKAQQL------GVKIMNEEQFLFLL 718
            +++G + G     A++L       +  + E++FL L+
Sbjct: 266 YVVLGSDAG-----AKKLEVIAKHKITTLTEDEFLELI 298


>gi|212537239|ref|XP_002148775.1| DNA replication factor C subunit Rfc1, putative [Penicillium
           marneffei ATCC 18224]
 gi|210068517|gb|EEA22608.1| DNA replication factor C subunit Rfc1, putative [Penicillium
           marneffei ATCC 18224]
          Length = 1031

 Score = 97.2 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
                   + +     VFTG L  + R + Q  V + G  V+   S KT  +++G + G 
Sbjct: 294 AEIPVGAENCLAGLSFVFTGVLDSLGREEGQSLVKRYGGKVTGAPSSKTSYVVLGSDAGP 353

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           SKL K +++ +K + EE    L+++
Sbjct: 354 SKLRKIKEMNIKTIGEEGLFELIRR 378


>gi|195054401|ref|XP_001994113.1| GH23049 [Drosophila grimshawi]
 gi|193895983|gb|EDV94849.1| GH23049 [Drosophila grimshawi]
          Length = 1008

 Score = 97.2 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++P      K     ++    + TG L+ ++R +A   + + G  +  ++ +K + ++VG
Sbjct: 213 LNPGSKEIPKGAPDCLKGLTFLVTGILESMERDEAASVIKEFGGRIMTVVGKKLNYLVVG 272

Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  G  KL +A++  V I++E+    L+++
Sbjct: 273 EEAGPKKLAQAEEHNVSILSEDALFELIRE 302


>gi|255078488|ref|XP_002502824.1| predicted protein [Micromonas sp. RCC299]
 gi|226518090|gb|ACO64082.1| predicted protein [Micromonas sp. RCC299]
          Length = 917

 Score = 96.8 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +E   +V +G L  ++R +A++YV + G  V++ +S KT  ++VG + G SK  KA+Q G
Sbjct: 207 LEGVTVVVSGVLDSLEREEAEDYVKRHGGKVTSTVSGKTTYLLVGMDCGKSKYNKAKQHG 266

Query: 706 VKIMNEEQFLFLLQ 719
             +++E+    ++ 
Sbjct: 267 TTLIDEDGLFAMVA 280


>gi|242809846|ref|XP_002485458.1| DNA replication factor C subunit Rfc1, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218716083|gb|EED15505.1| DNA replication factor C subunit Rfc1, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 1028

 Score = 96.8 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L  + R + Q  V + G  V+   S KT  +++G + G SKL K +++ 
Sbjct: 304 LAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTGAPSSKTSYVVLGSDAGPSKLRKIKEMN 363

Query: 706 VKIMNEEQFLFLLQQ 720
           +K + EE    L+++
Sbjct: 364 IKTIGEEGLFELIRR 378


>gi|170724912|ref|YP_001758938.1| BRCT domain-containing protein [Shewanella woodyi ATCC 51908]
 gi|169810259|gb|ACA84843.1| BRCT domain protein [Shewanella woodyi ATCC 51908]
          Length = 209

 Score = 96.8 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 2/73 (2%)

Query: 646 EIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQ 703
           E E++ +V TG  +    R +  E +  LGA + + +S+KT +++ G   G SKLEKA+ 
Sbjct: 132 EWEDQNIVLTGKFENYESRDELAEELEDLGANIRSSISKKTTLLVTGLRVGPSKLEKAKS 191

Query: 704 LGVKIMNEEQFLF 716
           LGV+I+ E + + 
Sbjct: 192 LGVRIITENELME 204


>gi|170106533|ref|XP_001884478.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164640824|gb|EDR05088.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 950

 Score = 96.8 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L    R +A +   + G  V    S KTD +++GDN G SK+   ++  
Sbjct: 288 LAGLSFVFTGELSSFSRDEAIDLAKRFGGRVVLQPSSKTDYVVLGDNAGPSKIAAIKKHK 347

Query: 706 VKIMNEEQFLFLLQQYNTTLRIHDD 730
           +  ++E++FL L+     + ++ D 
Sbjct: 348 INTLSEDEFLGLIATRKGSGKLDDK 372


>gi|156841650|ref|XP_001644197.1| hypothetical protein Kpol_1059p29 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114834|gb|EDO16339.1| hypothetical protein Kpol_1059p29 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 858

 Score = 96.4 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +    +VFTG L  ++R  A+    + GA V++ +SRKT ++++G+  G  K+EK +QLG
Sbjct: 148 LLGLTIVFTGVLPTLERGNAETLAKRYGARVTSSISRKTSVVVLGEEAGPKKVEKIKQLG 207

Query: 706 VKIMNEEQFLFLLQ 719
           VK +NE+ F  L+ 
Sbjct: 208 VKAINEDGFKQLIA 221


>gi|302307023|ref|NP_983504.2| ACR102Wp [Ashbya gossypii ATCC 10895]
 gi|299788800|gb|AAS51328.2| ACR102Wp [Ashbya gossypii ATCC 10895]
          Length = 840

 Score = 96.4 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +    +VFTG L  I R  A+    + GA V+  +S KT ++++GD  G  KLEK +QLG
Sbjct: 147 LLGLTMVFTGVLPNIDRPAAEALAKKYGARVTKSISSKTSVVVLGDEAGPKKLEKIRQLG 206

Query: 706 VKIMNEEQFLFLLQ 719
           +K ++E  F  L+ 
Sbjct: 207 IKAIDENGFRQLIN 220


>gi|300706363|ref|XP_002995454.1| hypothetical protein NCER_101643 [Nosema ceranae BRL01]
 gi|239604566|gb|EEQ81783.1| hypothetical protein NCER_101643 [Nosema ceranae BRL01]
          Length = 598

 Score = 96.4 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLG 705
            +NK  VFTG L  + R  A+  V  LG  V+   S+KTD ++VG  PG  KL+KAQ L 
Sbjct: 5   FKNKTFVFTGEL-TLDREYAKSKVILLGGRVTIAPSKKTDFLVVGAEPGPVKLKKAQDLN 63

Query: 706 VKIMNEEQFLFLLQQ 720
           +KI+ E++F   L +
Sbjct: 64  IKIIYEQEFTTNLNE 78


>gi|238882346|gb|EEQ45984.1| activator 1 95 kDa subunit [Candida albicans WO-1]
          Length = 890

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 11/122 (9%)

Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658
             +P +        V F+        + A   E + +     +   + +    +VFTG +
Sbjct: 154 AELPEIDPTKK---VNFFA-------LNAARNETTQTSVELPEAQPNCLTGLTIVFTGQM 203

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
             + R  A++   Q GA V+  +S KT ++++G + G SK++K +Q  +K ++E  F+ L
Sbjct: 204 PNLDRGTAEQTAKQYGAKVTKSISGKTSLVVLGTDAGPSKVQKIKQHKIKAIDEAGFIKL 263

Query: 718 LQ 719
           L+
Sbjct: 264 LE 265


>gi|146423370|ref|XP_001487614.1| hypothetical protein PGUG_00991 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 708

 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +    +VFTG L  + R +A+    Q GA V+  +S KT ++++GD  G SK++K +   
Sbjct: 12  LSGLTIVFTGVLPNLDRDQAEGLAKQYGAKVTKAISGKTSLVVLGDEAGPSKVQKIKANK 71

Query: 706 VKIMNEEQFLFLLQQ 720
           +K + EE FL LL++
Sbjct: 72  IKAITEESFLELLRR 86


>gi|190345075|gb|EDK36893.2| hypothetical protein PGUG_00991 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 708

 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +    +VFTG L  + R +A+    Q GA V+  +S KT ++++GD  G SK++K +   
Sbjct: 12  LSGLTIVFTGVLPNLDRDQAEGLAKQYGAKVTKAISGKTSLVVLGDEAGPSKVQKIKANK 71

Query: 706 VKIMNEEQFLFLLQQ 720
           +K + EE FL LL++
Sbjct: 72  IKAITEESFLELLRR 86


>gi|195111811|ref|XP_002000470.1| GI10247 [Drosophila mojavensis]
 gi|193917064|gb|EDW15931.1| GI10247 [Drosophila mojavensis]
          Length = 1026

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 50/101 (49%), Gaps = 4/101 (3%)

Query: 635 SIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           + G  E    S   ++    + TG L+ ++R +A   +   G  V  ++ +K + ++VG+
Sbjct: 242 NPGSKEIPKGSPDCLKGLTFLVTGILESMERDEAASVIKGFGGRVMTVVGKKLNYLVVGE 301

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLL-QQYNTTLRIHDDD 731
             G  KL +A++  V I++E+    L+ ++   T++    +
Sbjct: 302 EAGPKKLAQAEEFHVTILSEDGLFDLIREKSGETVKAKSSE 342


>gi|169865629|ref|XP_001839413.1| purine nucleotide binding protein [Coprinopsis cinerea
           okayama7#130]
 gi|116499532|gb|EAU82427.1| purine nucleotide binding protein [Coprinopsis cinerea
           okayama7#130]
          Length = 920

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
           P            +     VFTG L    R +A +   + G  V    S KTD +++G++
Sbjct: 222 PGSKPIPDGAPDALAGLSFVFTGELTAFSRDEAVDLAKRFGGRVVGQPSSKTDYVVLGED 281

Query: 694 PG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            G  KLE  ++  +  ++E+ FL L+ 
Sbjct: 282 AGPKKLEAIKKHKLNTLDEDGFLNLIA 308


>gi|172038660|ref|YP_001805161.1| hypothetical protein cce_3747 [Cyanothece sp. ATCC 51142]
 gi|171700114|gb|ACB53095.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 534

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 50/87 (57%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697
           + +      +E KKLV  G+L  + R  A+  V Q G  +++  S +T  ++VG NPG K
Sbjct: 443 QEKIKNEIILEGKKLVVVGSLNSMNREIAKSLVQQAGGTLTSSPSSRTHYVVVGKNPGDK 502

Query: 698 LEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           L+KAQ+LG+  ++E+QFL  L     T
Sbjct: 503 LKKAQKLGIAQLSEDQFLEALAATGIT 529


>gi|307166495|gb|EFN60580.1| Replication factor C subunit 1 [Camponotus floridanus]
          Length = 935

 Score = 95.2 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 628 LLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +  + + G  E    +   +     + TG    ++R +A+  + +        +S K 
Sbjct: 212 LQRGGARNPGSKEIPTGAPNCLAGVSFLLTGVFDSLERDEAEHLIRKYSGRTVNTVSGKV 271

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + IIVGD  G +KL KA  LG+K ++E+  L ++
Sbjct: 272 NYIIVGDEAGPAKLAKANSLGIKQISEDDLLEMI 305


>gi|238574191|ref|XP_002387514.1| hypothetical protein MPER_13721 [Moniliophthora perniciosa FA553]
 gi|215443056|gb|EEB88444.1| hypothetical protein MPER_13721 [Moniliophthora perniciosa FA553]
          Length = 108

 Score = 95.2 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707
               VFTG L    R +A +   + G  V    S KTD +I+GDN G SKL   ++ G+ 
Sbjct: 2   GLSFVFTGELSAFSREEAVDIAKRFGGRVVGQPSSKTDYVILGDNAGPSKLNAIKKHGLH 61

Query: 708 IMNEEQFLFLLQQYNTTLRI 727
            +NE++FL L+     + ++
Sbjct: 62  TLNEDEFLNLIATRKGSGKL 81


>gi|67611464|ref|XP_667157.1| replication factor C subunit 1 [Cryptosporidium hominis TU502]
 gi|54658259|gb|EAL36923.1| replication factor C subunit 1 [Cryptosporidium hominis]
          Length = 854

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN--------PGS 696
                  +V TGT     R + +++V  LG  +++ +S +T  +I G++         GS
Sbjct: 127 GPFNGMSIVVTGTFNSNSRQEIEDFVKILGGKLTSAVSGRTSYLIAGNSLEDGRSIEEGS 186

Query: 697 KLEKAQQLGVKIMNEEQFLFL 717
           K   A+  GVKI++E++F+ +
Sbjct: 187 KYRNAKSKGVKILSEDEFIEI 207


>gi|167390687|ref|XP_001739454.1| replication factor C large subunit [Entamoeba dispar SAW760]
 gi|165896833|gb|EDR24155.1| replication factor C large subunit, putative [Entamoeba dispar
           SAW760]
          Length = 576

 Score = 94.9 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQ 702
            +E E K  V TG   ++ R + +EY+T  G  V+  +S KT ++I G+ PG SK+EKA+
Sbjct: 159 ENEFEKKNFVLTGVYDELDRDEMKEYITNFGGNVATSISGKTGVLIAGEEPGPSKIEKAK 218

Query: 703 QLGVKIMNEEQFLFLLQQY 721
           + G+ I NE+     +++ 
Sbjct: 219 EKGIAIWNEDDVFDYVKKK 237


>gi|67922509|ref|ZP_00516018.1| BRCT [Crocosphaera watsonii WH 8501]
 gi|67855680|gb|EAM50930.1| BRCT [Crocosphaera watsonii WH 8501]
          Length = 490

 Score = 94.9 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 53/95 (55%)

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
           +       + +      +++KKLV  G+L  + R KA+  V Q+G  +++  S KT+ ++
Sbjct: 393 ESAEVEESKEQVKSELVLKSKKLVIVGSLDSMNREKAKSLVQQVGGNLTSSPSSKTNYVV 452

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           VG NPG KL+KA++ G+  ++E QFL  L     T
Sbjct: 453 VGKNPGDKLKKAKKFGIAQLSETQFLEALAAAGVT 487


>gi|217973787|ref|YP_002358538.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223]
 gi|217498922|gb|ACK47115.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223]
          Length = 300

 Score = 94.9 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 15/89 (16%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NP--------G 695
            E+  + +VFTG L  + R +A E   +LG  + + +S+KTD ++VG+ +          
Sbjct: 210 GELYGQTIVFTGELS-MTRAEAFEAAVELGLEIKSGVSKKTDYLVVGEQDANLVGPTGIS 268

Query: 696 SKLEKAQQL-----GVKIMNEEQFLFLLQ 719
           SK  KA+ L      ++I++E++F+ L+ 
Sbjct: 269 SKQIKAEALIDEGFDIQIIDEDEFITLIN 297


>gi|242011918|ref|XP_002426690.1| Replication factor C subunit, putative [Pediculus humanus corporis]
 gi|212510861|gb|EEB13952.1| Replication factor C subunit, putative [Pediculus humanus corporis]
          Length = 842

 Score = 94.5 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 1/89 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +P+     K  S+ ++N   V TG L  +++ KA E + + G  V+  +S+KTD I+VG+
Sbjct: 110 NPNSKTIPKGTSNCLQNLTFVITGILDSLEKKKAVELIQKYGGRVTTQVSKKTDFIVVGE 169

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
            PG SKL KA++   K +NE++ L L+ +
Sbjct: 170 EPGESKLSKAEKFCTKKINEDELLALITE 198


>gi|207109383|ref|ZP_03243545.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_CA4C1]
          Length = 53

 Score = 94.5 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 37/51 (72%)

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  LGA +S+ +S KTD +I G+NPGSKL  A++ GV ++NEE+ L  L++
Sbjct: 1   LENLGAKISSSVSAKTDFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKE 51


>gi|50306785|ref|XP_453368.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642502|emb|CAH00464.1| KLLA0D06897p [Kluyveromyces lactis]
          Length = 835

 Score = 94.5 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +    +VFTGTL  + R  ++    + GA V+  +S+ T ++++G+  G  KLE  ++LG
Sbjct: 152 LLGLTIVFTGTLPNLDRSTSENLAKRYGARVTKSISKNTSVVVLGEEAGPKKLENIKKLG 211

Query: 706 VKIMNEEQFLFLLQ 719
           +K ++EE F  L+ 
Sbjct: 212 IKAIDEEGFKRLIA 225


>gi|330948476|gb|EGH48736.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 60

 Score = 94.1 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           +E    LGA VS  +S KT  ++ G   GSKL KA +LG+ +++E+  L  L +    + 
Sbjct: 1   KEKRESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRLTELGVAVD 60


>gi|307197038|gb|EFN78410.1| Replication factor C subunit 1 [Harpegnathos saltator]
          Length = 1045

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 628 LLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           L +  + + G       ++  +     + TG  + ++R++ ++ +   G  +   +S K 
Sbjct: 312 LQRGGARNPGSKTIPTGAKNCLAGLTFLTTGVFESLERNEVEDLIKNYGGRIVNSVSSKV 371

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           + I+VGD  G +KL KA  L +K + E+  L ++
Sbjct: 372 NYIMVGDEAGPAKLAKANTLSIKQITEDDLLEMI 405


>gi|156093631|ref|XP_001612854.1| replication factor C subunit 1 [Plasmodium vivax SaI-1]
 gi|148801728|gb|EDL43127.1| replication factor C subunit 1, putative [Plasmodium vivax]
          Length = 945

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 14/96 (14%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSK 697
              N K V TG  +   R + Q  + + G  V + +S KT  +I G+        N G K
Sbjct: 232 PFHNLKFVLTGVFKNFSRDELQSKIKEHGGSVMSAVSSKTHYLIHGEYLEDGRMYNEGKK 291

Query: 698 LEKAQQLG------VKIMNEEQFLFLLQQYNTTLRI 727
            +KA +L       +KI+NEEQ L ++ Q       
Sbjct: 292 YQKAFELQKMSKSIIKILNEEQLLQMMPQEKDQTPK 327


>gi|221507917|gb|EEE33504.1| replication factor C subunit, putative [Toxoplasma gondii VEG]
          Length = 1260

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 29/128 (22%)

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSE---------IENKKLVFTGTLQKIQRHKAQEYVT 671
           N    +  ++E    + + +K   S             K  VFTG L  + R +A   V 
Sbjct: 434 NRK--KRKVEESVVPLTKKDKEEGSTNPLAGSTSCFAGKTFVFTGVLDSMAREEAVSAVV 491

Query: 672 QLGAVVSAILSRKTDIIIVG---DN-----PGSKLEKAQQL----------GVKIMNEEQ 713
             G   ++ +S +TD ++ G   ++      GSK  KA QL           +KI++E++
Sbjct: 492 GNGGRCTSAVSGRTDYLVAGALLEDGRDVTTGSKYRKALQLMHDGKGKQKTSLKILHEQE 551

Query: 714 FLFLLQQY 721
           FL +L + 
Sbjct: 552 FLAMLPEN 559


>gi|221483441|gb|EEE21760.1| replication factor C subunit, putative [Toxoplasma gondii GT1]
          Length = 1260

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 29/128 (22%)

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSE---------IENKKLVFTGTLQKIQRHKAQEYVT 671
           N    +  ++E    + + +K   S             K  VFTG L  + R +A   V 
Sbjct: 434 NRK--KRKVEESVVPLTKKDKEEGSTNPLAGSTSCFAGKTFVFTGVLDSMAREEAVSAVV 491

Query: 672 QLGAVVSAILSRKTDIIIVG---DN-----PGSKLEKAQQL----------GVKIMNEEQ 713
             G   ++ +S +TD ++ G   ++      GSK  KA QL           +KI++E++
Sbjct: 492 GNGGRCTSAVSGRTDYLVAGALLEDGRDVTTGSKYRKALQLMHDGKGKQKTSLKILHEQE 551

Query: 714 FLFLLQQY 721
           FL +L + 
Sbjct: 552 FLAMLPEN 559


>gi|237839249|ref|XP_002368922.1| replication factor C subunit, putative [Toxoplasma gondii ME49]
 gi|211966586|gb|EEB01782.1| replication factor C subunit, putative [Toxoplasma gondii ME49]
          Length = 1260

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 29/128 (22%)

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSE---------IENKKLVFTGTLQKIQRHKAQEYVT 671
           N    +  ++E    + + +K   S             K  VFTG L  + R +A   V 
Sbjct: 434 NRK--KRKVEESVVPLTKKDKEEGSTNPLAGSTSCFAGKTFVFTGVLDSMAREEAVSAVV 491

Query: 672 QLGAVVSAILSRKTDIIIVG---DN-----PGSKLEKAQQL----------GVKIMNEEQ 713
             G   ++ +S +TD ++ G   ++      GSK  KA QL           +KI++E++
Sbjct: 492 GNGGRCTSAVSGRTDYLVAGALLEDGRDVTTGSKYRKALQLMHDGKGKQKTSLKILHEQE 551

Query: 714 FLFLLQQY 721
           FL +L + 
Sbjct: 552 FLAMLPEN 559


>gi|6324791|ref|NP_014860.1| Rfc1p [Saccharomyces cerevisiae S288c]
 gi|584899|sp|P38630|RFC1_YEAST RecName: Full=Replication factor C subunit 1; Short=Replication
           factor C1; AltName: Full=Activator 1 95 kDa subunit;
           AltName: Full=Cell division control protein 44
 gi|437274|gb|AAC48916.1| Cdc44p [Saccharomyces cerevisiae]
 gi|841462|gb|AAC49060.1| Rfc1p [Saccharomyces cerevisiae]
 gi|1050769|emb|CAA63180.1| CDC44 [Saccharomyces cerevisiae]
 gi|1420505|emb|CAA99434.1| RFC1 [Saccharomyces cerevisiae]
 gi|256269587|gb|EEU04869.1| Rfc1p [Saccharomyces cerevisiae JAY291]
 gi|259149697|emb|CAY86501.1| Rfc1p [Saccharomyces cerevisiae EC1118]
 gi|285815096|tpg|DAA10989.1| TPA: Rfc1p [Saccharomyces cerevisiae S288c]
          Length = 861

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
           E+   IG   +   + +    +VFTG L  ++R  ++    + GA V+  +S KT ++++
Sbjct: 142 EIVSEIGSFPEGKPNCLLGLTIVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVL 201

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           GD  G  KLEK +QL +K ++EE F  L+ 
Sbjct: 202 GDEAGPKKLEKIKQLKIKAIDEEGFKQLIA 231


>gi|39942248|ref|XP_360661.1| hypothetical protein MGG_03204 [Magnaporthe oryzae 70-15]
 gi|145015808|gb|EDK00298.1| hypothetical protein MGG_03204 [Magnaporthe oryzae 70-15]
          Length = 1084

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L+ I R +AQ  V + G  V+   S KT  +++GD+ G SKL K +Q  
Sbjct: 344 LSGLTFVFTGLLKTIGREEAQALVKRYGGKVTGAPSGKTSFVVLGDDAGPSKLAKIKQHR 403

Query: 706 VKIMNEEQFLFLL 718
           +K ++E     L+
Sbjct: 404 LKTIDEVGLFHLI 416


>gi|190407527|gb|EDV10794.1| replication factor C subunit 1 [Saccharomyces cerevisiae RM11-1a]
          Length = 861

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
           E+   IG   +   + +    +VFTG L  ++R  ++    + GA V+  +S KT ++++
Sbjct: 142 EIVSEIGSFPEGKPNCLLGLTIVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVL 201

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           GD  G  KLEK +QL +K ++EE F  L+ 
Sbjct: 202 GDEAGPKKLEKIKQLKIKAIDEEGFKQLIA 231


>gi|66356684|ref|XP_625520.1| DNA replication repC1, AAA+ ATpase with a BRCT domain at the
           N-terminus [Cryptosporidium parvum Iowa II]
 gi|46226521|gb|EAK87515.1| DNA replication repC1, AAA+ ATpase with a BRCT domain at the
           N-terminus [Cryptosporidium parvum Iowa II]
          Length = 874

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 8/81 (9%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN--------PGS 696
                  +V TGT     R + +++V  LG  +++ +S +T  +I G++         GS
Sbjct: 147 GPFNGMSIVVTGTFNNNSRQEIEDFVKILGGKLTSAVSGRTSYLIAGNSLEDGRSIEEGS 206

Query: 697 KLEKAQQLGVKIMNEEQFLFL 717
           K   A+  GV I++E++F+ +
Sbjct: 207 KYRNAKSKGVNILSEDEFIEI 227


>gi|209876712|ref|XP_002139798.1| replication factor C subunit protein [Cryptosporidium muris RN66]
 gi|209555404|gb|EEA05449.1| replication factor C subunit protein, putative [Cryptosporidium
           muris RN66]
          Length = 845

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---DN 693
              EK+ +  +E K +V TG  +K  R   ++ V  LG  +++ +S +T  +I G   ++
Sbjct: 141 SITEKDPNLPLEGKSIVVTGLFEKKSRSDIEDLVKILGGKLTSAVSGRTSYLIAGYILED 200

Query: 694 P-----GSKLEKAQQLGVKIMNEEQFLFL 717
                 GSK + A    ++I++E++F+ +
Sbjct: 201 GRGITEGSKYKSAISKNIQILSEDEFINM 229


>gi|229137130|ref|ZP_04265749.1| DNA ligase [Bacillus cereus BDRD-ST26]
 gi|228646302|gb|EEL02517.1| DNA ligase [Bacillus cereus BDRD-ST26]
          Length = 74

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71
          +S E A+K +  L   ++  +  Y+    P + D+EYD   +    +    P+       
Sbjct: 1  MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM---SE 57

Query: 72 NGPLNKIGGEMNLSLFK 88
          + P  ++G    + L K
Sbjct: 58 DSPSVRVGERFLIYLKK 74


>gi|302853225|ref|XP_002958129.1| DNA replication factor C complex subunit 1 [Volvox carteri f.
           nagariensis]
 gi|300256597|gb|EFJ40860.1| DNA replication factor C complex subunit 1 [Volvox carteri f.
           nagariensis]
          Length = 963

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           P+  + E        +  +  V TG L  + R +A++ + + G  V+  +S KT  ++VG
Sbjct: 204 PNYRKKEVPRGHPDCLTGRTFVITGILDSLMRPEAEDLIKRHGGKVTKSVSGKTAFVVVG 263

Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
            N G  K   A+Q   K+++E+    LL+
Sbjct: 264 HNCGRGKYRDAKQHKTKLIDEDGLFALLK 292


>gi|224011579|ref|XP_002295564.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209583595|gb|ACI64281.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 649

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 9/85 (10%)

Query: 643 VSSEIENKKLVFTGTLQ--------KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
           ++  +  K++V TGT             + + +E +   G  V+  +S KTD +IVG +P
Sbjct: 532 IAGILNGKRVVLTGTFPEVGGGTGLNAGKDRMKEMIESFGGKVTGSVSGKTDYLIVGRDP 591

Query: 695 G-SKLEKAQQLGVKIMNEEQFLFLL 718
           G SK+ KA Q G+ +MN  Q   LL
Sbjct: 592 GASKVGKAHQRGLPLMNILQLQHLL 616



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 14/97 (14%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKI------QRH---KAQEYVTQLGAVVSAILSRK 684
           P+ G      +S ++ K  + TG+  ++      +       +  +      V+   S+ 
Sbjct: 295 PTPGVDGSADASFLKGKTFIITGSFPELVGGVKAKDAGVGDVKHCLESFEGKVTTRFSKM 354

Query: 685 TDIIIVGDNP-GSKLEKA--QQLGVKIMNEEQFLFLL 718
           T+ ++VG +   SK   A  ++  V ++N  +   LL
Sbjct: 355 TNYLVVGRDAVQSKFSDAFTRE--VTVINLPRLKSLL 389


>gi|187776894|ref|ZP_02993367.1| hypothetical protein CLOSPO_00433 [Clostridium sporogenes ATCC
           15579]
 gi|187775553|gb|EDU39355.1| hypothetical protein CLOSPO_00433 [Clostridium sporogenes ATCC
           15579]
          Length = 242

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 120/262 (45%), Gaps = 29/262 (11%)

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
            ++K+ V     NI+ L  + ++  FK+      +    DIF L++ +         I G
Sbjct: 8   NKIKNMVGEKGLNIKKLNDETINILFKN----GFLNNVYDIFLLKKEELYK------ING 57

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
           F    V  L  SI+K +N S E+FI++  I  V  + A ++A  +L++ +       +I 
Sbjct: 58  FTKEHVDELIKSIDKAKNCSFEKFIYASSIPKVKEKEAMAIAHTFLNFTDL------VID 111

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIE 648
            NN+D   L R+  + + + ++I       RN   +  L   V+P SI     N+     
Sbjct: 112 INNNDCDRLRRIDGISEELVESI------KRNRVFLVNLFMYVNPTSIDEKNANIKRY-- 163

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707
             K   TG L K   +  +E + +   +V   +++  D ++ GD   + K+  A++   +
Sbjct: 164 --KFCITGVLNKDT-NYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220

Query: 708 IMNEEQFLFLLQQYNTTLRIHD 729
           +++E Q + +L++   + ++ +
Sbjct: 221 LISERQLVDILKEIKESNKMKN 242


>gi|151945307|gb|EDN63550.1| replication factor C subunit 1 [Saccharomyces cerevisiae YJM789]
          Length = 861

 Score = 92.6 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
           E++  IG   +   + +    +VFTG L  ++R  ++    + GA V+  +S KT ++++
Sbjct: 142 EIASEIGSFPEGKPNCLLGLTIVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVL 201

Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           GD  G  KLEK +QL +K ++EE F  L+ 
Sbjct: 202 GDEAGPKKLEKIKQLKIKAIDEEGFKQLIA 231


>gi|293374981|ref|ZP_06621276.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909]
 gi|325843349|ref|ZP_08167932.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1]
 gi|292646391|gb|EFF64406.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909]
 gi|325489378|gb|EGC91751.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1]
          Length = 306

 Score = 92.6 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 14/106 (13%)

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
            +  +PS      + S   ++K +VFTGTL+ + R  A + ++QLG  V + ++RKTD +
Sbjct: 201 KRNFTPSPLPFISSKSDVFKHKTVVFTGTLKSMSRLSAIQLISQLGGTVGSSVTRKTDFL 260

Query: 689 IVG---------DNPGSKLEKAQQL-----GVKIMNEEQFLFLLQQ 720
           IV              +KL+KA +L      ++I+NE +FL  L +
Sbjct: 261 IVSHPAVYELQPHEMSTKLKKAIELIYKGQAIQILNESEFLEQLTK 306


>gi|227894105|ref|ZP_04011910.1| conserved hypothetical protein [Lactobacillus ultunensis DSM 16047]
 gi|227864083|gb|EEJ71504.1| conserved hypothetical protein [Lactobacillus ultunensis DSM 16047]
          Length = 183

 Score = 92.6 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
                  + + S+    K +  TGTL    R +  + +  +G        + TD +IVG+
Sbjct: 90  DIPGDSTKNDESNAFYGKNVSATGTLTNYTRKEIGQIINNIGGKFQMNPGKSTDYLIVGN 149

Query: 693 --NPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
              P +K +KA++LG+ I++E  FL ++  Y+
Sbjct: 150 LNKPSAKQKKAEKLGIPILSENDFLSMIAGYD 181


>gi|33322833|gb|AAQ07152.1|AF496462_1 DNA ligase [Lactobacillus delbrueckii subsp. lactis]
          Length = 69

 Score = 92.6 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 33/53 (62%)

Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
           +  LGA V+  +S+KTD ++ G++ GSKL KA+ L +  + E + +  +++  
Sbjct: 1   LQALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKG 53


>gi|169347247|ref|ZP_02866186.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
 gi|169296643|gb|EDS78774.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
          Length = 302

 Score = 92.6 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 14/97 (14%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691
              +K     ++ K +VFTG L  + R +A   V + G  VS+ +S+KT+ ++ G     
Sbjct: 206 KEKKKEGEISLKCKNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLVTGIRDLS 265

Query: 692 ---DNPGS-KLEKAQQL-----GVKIMNEEQFLFLLQ 719
              +N  S KL+KA+ L      +KI+NEE+FL +++
Sbjct: 266 ELKENEKSIKLKKAENLIKENFDIKIINEEEFLSIIE 302


>gi|110802120|ref|YP_698713.1| DNA polymerase III subunit epsilon [Clostridium perfringens SM101]
 gi|110682621|gb|ABG85991.1| exonuclease family protein [Clostridium perfringens SM101]
          Length = 302

 Score = 92.6 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 14/97 (14%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691
              +K     ++ K +VFTG L  + R +A   V + G  VS+ +S+KT+ ++ G     
Sbjct: 206 KEKKKEGEISLKCKNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLVTGIRDLS 265

Query: 692 ---DNPGS-KLEKAQQL-----GVKIMNEEQFLFLLQ 719
              +N  S KL+KA+ L      +KI+NEE+FL +++
Sbjct: 266 ELKENEKSIKLKKAENLIKENFDIKIINEEEFLSIIE 302


>gi|168206308|ref|ZP_02632313.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
 gi|170662180|gb|EDT14863.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
          Length = 302

 Score = 92.6 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 14/97 (14%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691
              +K+    ++ K +VFTG L  + R +A   V + G  VS+ +S+KT+ +I G     
Sbjct: 206 KEKKKDGEISLKCKNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDLN 265

Query: 692 ---DNPGS-KLEKAQQL-----GVKIMNEEQFLFLLQ 719
              +N  S KL+KA+ L      +KI+NEE+FL +++
Sbjct: 266 KLKENEKSIKLKKAENLIKENFDIKIINEEEFLSIIE 302


>gi|168215255|ref|ZP_02640880.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|168216790|ref|ZP_02642415.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
 gi|170713347|gb|EDT25529.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|182381117|gb|EDT78596.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
          Length = 302

 Score = 92.2 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 14/97 (14%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691
              +K+    ++ K +VFTG L  + R +A   V + G  VS+ +S+KT+ +I G     
Sbjct: 206 KEKKKDGEISLKCKNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDLN 265

Query: 692 ---DNPGS-KLEKAQQL-----GVKIMNEEQFLFLLQ 719
              +N  S KL+KA+ L      +KI+NEE+FL +++
Sbjct: 266 KLKENEKSIKLKKAENLIKENFDIKIINEEEFLSIIE 302


>gi|110799993|ref|YP_696096.1| DNA polymerase III subunit epsilon [Clostridium perfringens ATCC
           13124]
 gi|168209994|ref|ZP_02635619.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|110674640|gb|ABG83627.1| exonuclease family protein [Clostridium perfringens ATCC 13124]
 gi|170711840|gb|EDT24022.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 302

 Score = 92.2 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 14/97 (14%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691
              +K     ++ K +VFTG L  + R +A   V + G  VS+ +S+KT+ +I G     
Sbjct: 206 KEKKKEGEISLKCKNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDLN 265

Query: 692 ---DNPGS-KLEKAQQL-----GVKIMNEEQFLFLLQ 719
              +N  S KL+KA+ L      +KI+NEE+FL +++
Sbjct: 266 KLKENEKSIKLKKAENLIKENFDIKIINEEEFLSIIE 302


>gi|320170447|gb|EFW47346.1| replication factor C subunit 1 [Capsaspora owczarzaki ATCC 30864]
          Length = 1056

 Score = 92.2 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +E    V TG    I R   +  +   G  V+  +S+KT  ++ G + G SK   A+++G
Sbjct: 308 LEGLTFVVTGIFDAIDRTDLENLIKAHGGKVTGAVSKKTTYLVAGRDCGISKTRTAKEVG 367

Query: 706 VKIMNEEQFLFLL 718
            KI++++    L+
Sbjct: 368 TKIVDDDAVFDLI 380


>gi|18310383|ref|NP_562317.1| DNA polymerase III subunit epsilon [Clostridium perfringens str.
           13]
 gi|18145063|dbj|BAB81107.1| probable DNA polymerase III epsilon chain [Clostridium perfringens
           str. 13]
          Length = 302

 Score = 92.2 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 14/97 (14%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691
              +K     ++ K +VFTG L  + R +A   V + G  VS+ +S+KT+ +I G     
Sbjct: 206 KEKKKEGEISLKCKNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDLN 265

Query: 692 ---DNPGS-KLEKAQQL-----GVKIMNEEQFLFLLQ 719
              +N  S KL+KA+ L      +KI+NEE+FL +++
Sbjct: 266 KLKENEKSIKLKKAENLIKENFDIKIINEEEFLSIIE 302


>gi|299472502|emb|CBN77287.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 978

 Score = 92.2 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           P+ G+ E  V  E  +  K  V +G L  + R  A++ + Q G  V+  +S +T  +++G
Sbjct: 242 PNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLG 301

Query: 692 --------DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
                      GSK ++A  +  +I++E+    +L+  N
Sbjct: 302 TVLDDGRPPEEGSKYKRAMVMKTRIIDEDGLFKMLRDSN 340


>gi|182626433|ref|ZP_02954185.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|177908230|gb|EDT70788.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
          Length = 302

 Score = 91.8 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 14/97 (14%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691
              +K+    ++ K +VFTG L  + R +A   V + G  VS+ +S+KT+ +I G     
Sbjct: 206 KEKKKDGEISLKCKNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDLN 265

Query: 692 ---DNPGS-KLEKAQQL-----GVKIMNEEQFLFLLQ 719
              +N  S KLEKA+ L      +KI+NEE+FL +++
Sbjct: 266 KLKENEKSIKLEKAENLIKENFDIKIINEEEFLSIIE 302


>gi|256071069|ref|XP_002571864.1| chromosome transmission fidelity factor [Schistosoma mansoni]
 gi|238657012|emb|CAZ28094.1| chromosome transmission fidelity factor, putative [Schistosoma
           mansoni]
          Length = 1015

 Score = 91.8 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           ++    + TG L+ I+R  A   +   G  V   L +KTD ++VG  PG +K+EKA  L 
Sbjct: 211 LKGLNFLITGILECIEREDAANLIQNCGGKVLKTLGKKTDYLVVGREPGAAKIEKANNLK 270

Query: 706 VKIMNEEQFLFLLQQYNTTLRIH 728
           +K + EE    ++++ +    +H
Sbjct: 271 IKQITEEYLFEMIEKSSNVPLVH 293


>gi|119481305|ref|XP_001260681.1| chromosome transmission fidelity factor [Neosartorya fischeri NRRL
           181]
 gi|119408835|gb|EAW18784.1| chromosome transmission fidelity factor [Neosartorya fischeri NRRL
           181]
          Length = 1064

 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L  + R + Q  V + G  V+   S KT  +++G + G +KL+K Q+  
Sbjct: 333 LAGLSFVFTGVLDTLGREEGQNLVKKYGGKVTTAPSSKTSYVVLGSDAGPNKLKKIQEHN 392

Query: 706 VKIMNEEQFLFLLQQ 720
           ++ +NEE    L+++
Sbjct: 393 LRTINEEGLFELIRR 407


>gi|255713750|ref|XP_002553157.1| KLTH0D10296p [Lachancea thermotolerans]
 gi|238934537|emb|CAR22719.1| KLTH0D10296p [Lachancea thermotolerans]
          Length = 864

 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
                 +   + +    +VFTG L  I+R  A+    + GA V+  +S KT ++++GD  
Sbjct: 150 EEANFPEGAPNCLLGLTIVFTGQLPTIERGVAEAIAKRYGARVTKSISSKTSVVVLGDEA 209

Query: 695 G-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           G  KLEK +QL +K ++E+ F  L+ 
Sbjct: 210 GPKKLEKIKQLKIKAIDEDGFKQLVA 235


>gi|213402719|ref|XP_002172132.1| replication factor C subunit 1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000179|gb|EEB05839.1| replication factor C subunit 1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 930

 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 635 SIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
             G           +     V TG L+ + R +A + + Q G  V+   S KTD +++GD
Sbjct: 204 EQGSKPIPSGQPGCLSGLSFVITGILETLTRQEAGDLIKQYGGKVTGAPSTKTDFVVLGD 263

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           N G  K+E  +   ++ ++E+  LFL+
Sbjct: 264 NAGPRKVETIKTHNIRAIDEDGLLFLI 290


>gi|146322944|ref|XP_755554.2| DNA replication factor C subunit Rfc1 [Aspergillus fumigatus Af293]
 gi|129558538|gb|EAL93516.2| DNA replication factor C subunit Rfc1, putative [Aspergillus
           fumigatus Af293]
 gi|159129617|gb|EDP54731.1| DNA replication factor C subunit Rfc1, putative [Aspergillus
           fumigatus A1163]
          Length = 1085

 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L  + R + Q  V + G  V+   S KT  +++G + G +KL+K Q+  
Sbjct: 336 LAGLSFVFTGVLDTLGREEGQNLVKKYGGKVTTAPSSKTSYVVLGSDAGPNKLKKIQEHN 395

Query: 706 VKIMNEEQFLFLLQQ 720
           ++ +NE+    L+++
Sbjct: 396 LRTINEQGLFELIRR 410


>gi|320586272|gb|EFW98951.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
          Length = 1507

 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +  +  VFTG LQ I R + Q  V + G  V+   SR T  +++GD+ G SKL K  QL 
Sbjct: 754 LVGQTFVFTGLLQTISRDEGQALVKRYGGKVTTAPSRNTSWVVLGDDAGPSKLAKISQLS 813

Query: 706 VKIMNEEQFLFLLQQ 720
           ++ ++E     L+++
Sbjct: 814 LRTIDENGLFELIKR 828


>gi|326437790|gb|EGD83360.1| hypothetical protein PTSG_03969 [Salpingoeca sp. ATCC 50818]
          Length = 1046

 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707
             K V TG L  I+R  A+  +   G  V   +S + + I+ G  PG SK++KA++L + 
Sbjct: 340 GLKFVLTGVLDSIERDTAERLIKDHGGAVQKSVSGRVNYIVAGIEPGPSKMKKAEELKLN 399

Query: 708 IMNEEQFLFLL 718
           +++E+    L+
Sbjct: 400 VIDEDGLFDLI 410


>gi|145232225|ref|XP_001399565.1| replication factor C subunit 1 [Aspergillus niger CBS 513.88]
 gi|134056478|emb|CAK37567.1| unnamed protein product [Aspergillus niger]
          Length = 1058

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L  + R + Q  V + G  V+   S KT  +++G + G  KL   +Q  
Sbjct: 327 LAGLSFVFTGVLDTLGRDEGQNLVKKYGGKVTGAPSSKTSYVVLGADAGPKKLATIKQHN 386

Query: 706 VKIMNEEQFLFLLQQ 720
           +K +NEE    L+++
Sbjct: 387 LKTINEEGLFELIRR 401


>gi|327349015|gb|EGE77872.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis
           ATCC 18188]
          Length = 1065

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L  + R + Q  V + G  V++  S KT  +++G++ G  KLE  ++ G
Sbjct: 330 LAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSGPSSKTSYVVLGNDAGPKKLETIRKFG 389

Query: 706 VKIMNEEQFLFLLQQ 720
           +K +NE+    L+++
Sbjct: 390 LKTINEDGLFELIRR 404


>gi|261195366|ref|XP_002624087.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis
           SLH14081]
 gi|239587959|gb|EEQ70602.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis
           SLH14081]
          Length = 1065

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L  + R + Q  V + G  V++  S KT  +++G++ G  KLE  ++ G
Sbjct: 330 LAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSGPSSKTSYVVLGNDAGPKKLETIRKFG 389

Query: 706 VKIMNEEQFLFLLQQ 720
           +K +NE+    L+++
Sbjct: 390 LKTINEDGLFELIRR 404


>gi|239610551|gb|EEQ87538.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis
           ER-3]
          Length = 1068

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L  + R + Q  V + G  V++  S KT  +++G++ G  KLE  ++ G
Sbjct: 333 LAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSGPSSKTSYVVLGNDAGPKKLETIRKFG 392

Query: 706 VKIMNEEQFLFLLQQ 720
           +K +NE+    L+++
Sbjct: 393 LKTINEDGLFELIRR 407


>gi|253742407|gb|EES99241.1| Replication factor C, subunit 1 [Giardia intestinalis ATCC 50581]
          Length = 886

 Score = 89.9 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQ 703
           + +     V TG L+ +     + Y+  LG  V+  +S KT  +IVGD+PG +KL  A+ 
Sbjct: 173 NSLSKLIFVRTGNLRTMSDTDMKLYIANLGGTVTTSVSGKTSYLIVGDDPGATKLRDAKA 232

Query: 704 LGVKIMNEEQFLFLLQQYNT 723
             V+I++E++F  L+ +  +
Sbjct: 233 KFVRIISEKEFYDLIVKKGS 252


>gi|254583820|ref|XP_002497478.1| ZYRO0F06446p [Zygosaccharomyces rouxii]
 gi|238940371|emb|CAR28545.1| ZYRO0F06446p [Zygosaccharomyces rouxii]
          Length = 841

 Score = 89.5 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +    LVFTGTL  I+R  A+    + GA ++  +S KT  +++G+  G  K++  ++LG
Sbjct: 137 LLGLTLVFTGTLPNIERGVAESIAKRYGARITKSISSKTSAVVLGEEAGPKKVDTIKKLG 196

Query: 706 VKIMNEEQFLFLL 718
           +K ++EE F  L+
Sbjct: 197 IKAIDEEGFKQLI 209


>gi|251779366|ref|ZP_04822286.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243083681|gb|EES49571.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 309

 Score = 89.5 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 14/84 (16%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSK 697
             ++ +VFTG L  + R +A   V +LG  V + +++KT  ++           D   +K
Sbjct: 221 FTDEVVVFTGGLASMTRDEAIRLVRKLGGSVGSSVTKKTTYLVTNTKDIDNLHRDEMSTK 280

Query: 698 LEKAQQL-----GVKIMNEEQFLF 716
           L KA  L     G+K +NEE FL 
Sbjct: 281 LRKAVDLKNKGQGIKCLNEEDFLK 304


>gi|295674213|ref|XP_002797652.1| replication factor C subunit 1 [Paracoccidioides brasiliensis Pb01]
 gi|226280302|gb|EEH35868.1| replication factor C subunit 1 [Paracoccidioides brasiliensis Pb01]
          Length = 1066

 Score = 89.5 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L  + R + Q  V + G  V+   S KT  +++GD+ G  KLE  ++ G
Sbjct: 328 LVGLSFVFTGVLSSLGREEGQSLVKRYGGKVTTGPSSKTSYVVLGDDAGPKKLETIKKFG 387

Query: 706 VKIMNEEQFLFLLQQ 720
           +K +NEE    L+++
Sbjct: 388 LKTINEEGLFELIRR 402


>gi|225684712|gb|EEH22996.1| replication factor C subunit 1 [Paracoccidioides brasiliensis Pb03]
          Length = 1066

 Score = 89.5 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L  + R + Q  V + G  V+   S KT  +++GD+ G  KLE  ++ G
Sbjct: 328 LVGLSFVFTGVLSSLGREEGQSLVKRYGGKVTTGPSSKTSYVVLGDDAGPKKLETIKKFG 387

Query: 706 VKIMNEEQFLFLLQQ 720
           +K +NEE    L+++
Sbjct: 388 LKTINEEGLFELIRR 402


>gi|226286728|gb|EEH42241.1| replication factor C subunit 1 [Paracoccidioides brasiliensis Pb18]
          Length = 1066

 Score = 89.5 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L  + R + Q  V + G  V+   S KT  +++GD+ G  KLE  ++ G
Sbjct: 328 LVGLSFVFTGVLSSLGREEGQSLVKRYGGKVTTGPSSKTSYVVLGDDAGPKKLETIKKFG 387

Query: 706 VKIMNEEQFLFLLQQ 720
           +K +NEE    L+++
Sbjct: 388 LKTINEEGLFELIRR 402


>gi|269860225|ref|XP_002649835.1| replication factor C subunit [Enterocytozoon bieneusi H348]
 gi|220066776|gb|EED44248.1| replication factor C subunit [Enterocytozoon bieneusi H348]
          Length = 570

 Score = 89.5 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 2/81 (2%)

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709
             VFTG + K+ R  AQ  + QLG   ++ +S KT  +IVG++PG SKL+KA++LG+ I+
Sbjct: 9   TFVFTGIM-KMDREHAQFQIRQLGHRSTSAISGKTTHLIVGNDPGVSKLKKAKELGILIL 67

Query: 710 NEEQFLFLLQQYNTTLRIHDD 730
           NE +F  LL +   +++  + 
Sbjct: 68  NETEFEQLLHKMQESVKKREA 88


>gi|121715788|ref|XP_001275503.1| chromosome transmission fidelity factor [Aspergillus clavatus NRRL
           1]
 gi|119403660|gb|EAW14077.1| chromosome transmission fidelity factor [Aspergillus clavatus NRRL
           1]
          Length = 1068

 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L  + R + Q  V + G  V+   S KT  +++G + G  KL+  Q   
Sbjct: 338 LAGLSFVFTGVLDTLGRDEGQALVKKYGGKVTTAPSSKTSYVVLGSDAGPKKLKTIQDHK 397

Query: 706 VKIMNEEQFLFLLQQ 720
           +K +NEE    L+++
Sbjct: 398 LKTINEEGLFELIRR 412


>gi|237796641|ref|YP_002864193.1| BRCT domain protein [Clostridium botulinum Ba4 str. 657]
 gi|229263554|gb|ACQ54587.1| BRCT domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 242

 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 61/262 (23%), Positives = 116/262 (44%), Gaps = 29/262 (11%)

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
            R+K+ V     NI+ L  + ++  FK+      +    DIF L++ +         I G
Sbjct: 8   NRIKNMVGEKGINIKELNDETINILFKN----GLLNNAYDIFLLKKEELYK------IDG 57

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
                V  L  SINK +N S E+FI++  I  V  + A  +A  +L++ +       +I 
Sbjct: 58  LTKEYVDKLIKSINKTKNCSFEKFIYACSIPKVKEKEAIVIAHTFLNFTDL------VID 111

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIE 648
            NN+D   L R+  + + I ++I       RN   +  L   V+P SI     N+     
Sbjct: 112 INNNDCDRLKRIDGMSEEIVESI------KRNKVLLVNLFMYVNPISIDEKNANIKRY-- 163

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707
             K   TG L K      +E + +   +V   +++  D ++ GD   + K+  A++   +
Sbjct: 164 --KFCITGVLNKDT-SYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220

Query: 708 IMNEEQFLFLLQQYNTTLRIHD 729
           +++E Q + +L++     ++ +
Sbjct: 221 LISERQLVDILKEIKENNKMKN 242


>gi|320035705|gb|EFW17646.1| chromosome transmission fidelity factor [Coccidioides posadasii
           str. Silveira]
          Length = 1045

 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
                     + +     VFTG L  + R + Q  V + G  V+   S KT  +++G + 
Sbjct: 288 EPAELPIGAENCLAGLSFVFTGVLDSLGRDEGQALVKRYGGKVTGAPSSKTSYVVLGSDA 347

Query: 695 G-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  KLE  ++  +K +NE     L+++
Sbjct: 348 GPKKLETIRKHNLKTINEYGLFELIRK 374


>gi|255946327|ref|XP_002563931.1| Pc20g14550 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588666|emb|CAP86784.1| Pc20g14550 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1053

 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L+ + R +  + V + G  V    S KT  +++G + G  KLE   +  
Sbjct: 326 LAGLSFVFTGVLESLGREEGAQLVKKYGGKVVGAPSSKTSYVVLGADAGPKKLETIAKHK 385

Query: 706 VKIMNEEQFLFLLQQ 720
           +K +NE+    L+++
Sbjct: 386 IKTINEDGLFELIRR 400


>gi|145483437|ref|XP_001427741.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124394824|emb|CAK60343.1| unnamed protein product [Paramecium tetraurelia]
          Length = 807

 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 13/110 (11%)

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
             P N   ++     V        KN    +    +V +G L    R K ++++   GA 
Sbjct: 82  SKPENKKQMD-----VEIEKQDVFKNDPDLLNGLTIVLSGILNVCSRDKFEQFLKNNGAK 136

Query: 677 VSAILSRKTDIIIVGDN--------PGSKLEKAQQLGVKIMNEEQFLFLL 718
           V+  +S KT+ +IVGD          G+K ++A + G KI+ E +    L
Sbjct: 137 VTGSVSGKTNYLIVGDKLEDGRKGEEGNKFKEATKKGTKIIRENELNNWL 186


>gi|303315067|ref|XP_003067541.1| BRCA1 C Terminus domain containing protein [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240107211|gb|EER25396.1| BRCA1 C Terminus domain containing protein [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 1068

 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
                     + +     VFTG L  + R + Q  V + G  V+   S KT  +++G + 
Sbjct: 311 EPAELPIGAENCLAGLSFVFTGVLDSLGRDEGQALVKRYGGKVTGAPSSKTSYVVLGSDA 370

Query: 695 G-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  KLE  ++  +K +NE     L+++
Sbjct: 371 GPKKLETIRKHNLKTINEYGLFELIRK 397


>gi|119190369|ref|XP_001245791.1| hypothetical protein CIMG_05232 [Coccidioides immitis RS]
          Length = 1068

 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
                     + +     VFTG L  + R + Q  V + G  V+   S KT  +++G + 
Sbjct: 311 EPAELPIGAENCLAGLSFVFTGVLDSLGRDEGQALVKRYGGKVTGAPSSKTSYVVLGSDA 370

Query: 695 G-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           G  KLE  ++  +K +NE     L+++
Sbjct: 371 GPKKLETIRKHNLKTINEYGLFELIRK 397


>gi|170760368|ref|YP_001788506.1| BRCT domain-containing protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407357|gb|ACA55768.1| BRCT domain protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 242

 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 61/262 (23%), Positives = 116/262 (44%), Gaps = 29/262 (11%)

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
            R+K+ V     NI+ L  + ++  FK+      +    DIF L++ +         I G
Sbjct: 8   NRIKNMVGEKGINIKELNDKTINILFKN----GLLNNAYDIFLLKKEELYK------IDG 57

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
                V  L  SINK +N S E+FI++  I  V  + A  +A  +L++ +       +I 
Sbjct: 58  LTKEYVDELIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFLNFTDL------VID 111

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIE 648
            NN+D   L R+  + + I ++I       RN   +  L   V+P SI     N+     
Sbjct: 112 INNNDCDRLKRIDGMSEEIVESI------KRNKVLLVNLFMYVNPISIDEKNANIKRY-- 163

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707
             K   TG L K      +E + +   +V   +++  D ++ GD   + K+  A++   +
Sbjct: 164 --KFCITGVLNKDT-SYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220

Query: 708 IMNEEQFLFLLQQYNTTLRIHD 729
           +++E Q + +L++     ++ +
Sbjct: 221 LISERQLVDILKEIKENNKMKN 242


>gi|154281839|ref|XP_001541732.1| hypothetical protein HCAG_03830 [Ajellomyces capsulatus NAm1]
 gi|150411911|gb|EDN07299.1| hypothetical protein HCAG_03830 [Ajellomyces capsulatus NAm1]
          Length = 1066

 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L  + R + Q  V + G  V++  S KT+ +++G + G  KLE  ++ G
Sbjct: 329 LAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSAPSSKTNYVVLGSDAGPKKLETIRKFG 388

Query: 706 VKIMNEEQFLFLLQQ 720
           +K +NE+    L+++
Sbjct: 389 LKSINEDGLFELIRR 403


>gi|325093242|gb|EGC46552.1| chromosome transmission fidelity protein [Ajellomyces capsulatus
           H88]
          Length = 1071

 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L  + R + Q  V + G  V++  S KT+ +++G + G  KLE  ++ G
Sbjct: 334 LAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSAPSSKTNYVVLGSDAGPKKLETIRKFG 393

Query: 706 VKIMNEEQFLFLLQQ 720
           +K +NE+    L+++
Sbjct: 394 LKSINEDGLFELIRR 408


>gi|312128938|ref|YP_003996278.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella
           byssophila DSM 17132]
 gi|311905484|gb|ADQ15925.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella
           byssophila DSM 17132]
          Length = 303

 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 71/203 (34%), Gaps = 20/203 (9%)

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
             +    L  S +   +  + + + +  ++ +      +L  +     + A     + A 
Sbjct: 102 YQLPFPTLNYSCSYIFSKKVWQGLPAYDLKTLCKVNNINLKHHRAGADSKATAELTLKAF 161

Query: 591 NNDDWLSLIRVPLVGDI---IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
                     +    +        +      P     +              + N  S  
Sbjct: 162 EIAGV---SSIDDFPEKLKTTVGQLYNGGYKPAETKRIYKAKDLTKIEGDPTKHNTESIF 218

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKL 698
             + +VFTG L  + R +AQ+ +  +G ++   ++++TD ++VG         D   SK 
Sbjct: 219 YGRTVVFTGALSSMVRAEAQQTIADIGGILGNGVTKETDFLVVGQQDYRVVGEDGMSSKQ 278

Query: 699 EKAQQL-----GVKIMNEEQFLF 716
           +KA  L      ++I++E+ FL 
Sbjct: 279 KKAISLIEKGSSLEILSEDDFLK 301


>gi|168183502|ref|ZP_02618166.1| BRCT domain protein [Clostridium botulinum Bf]
 gi|182673380|gb|EDT85341.1| BRCT domain protein [Clostridium botulinum Bf]
          Length = 242

 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 115/262 (43%), Gaps = 29/262 (11%)

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
            R+K+ V     NI+ L  + ++  FK+      +    DIF L++ +         I G
Sbjct: 8   NRIKNMVGEKGINIKELNDETINILFKN----GLLNNAYDIFLLKKEELYK------IDG 57

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
                V  L  SINK +N S E+FI++  I  V  + A  +A  + ++ +       +I 
Sbjct: 58  LTKEYVDKLIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFFNFTDL------VID 111

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIE 648
            NN+D   L R+  + + I ++I       RN   +  L   V+P SI     N+     
Sbjct: 112 INNNDCDRLKRIDGMSEEIVESI------KRNKVLLVNLFMYVNPISIDEKNANIKRY-- 163

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707
             K   TG L K      +E + +   +V   +++  D ++ GD   + K+  A++   +
Sbjct: 164 --KFCITGVLNKDT-SYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220

Query: 708 IMNEEQFLFLLQQYNTTLRIHD 729
           +++E Q + +L++     ++ +
Sbjct: 221 LISERQLVDILKEIKENNKMKN 242


>gi|82541068|ref|XP_724804.1| replication factor C, 140 kDa subunit [Plasmodium yoelii yoelii
           str. 17XNL]
 gi|23479576|gb|EAA16369.1| replication factor C, 140 kDa subunit [Plasmodium yoelii yoelii]
          Length = 888

 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 19/118 (16%)

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            +N    + +  E +  + ++E NVS         NKK V TG  +   R   Q  + + 
Sbjct: 150 EQNRSKKKHISTEDNNILQKNETNVSQNFDYLPFINKKFVLTGVFKTYSRDDLQNKIKEH 209

Query: 674 GAVVSAILSRKTDIIIVGD--------NPGSKLEKAQQLG------VKIMNEEQFLFL 717
           G  V + +S +T  ++ G+        + G K +KA +L       +KI+NEE+ L +
Sbjct: 210 GGSVMSAVSSRTHYLVHGEYLEDGRLYSEGKKYQKAYELSKQSKSIIKILNEEELLQM 267


>gi|240275879|gb|EER39392.1| chromosome transmission fidelity factor [Ajellomyces capsulatus
           H143]
          Length = 1071

 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L  + R + Q  V + G  V++  S KT+ +++G + G  KLE  ++ G
Sbjct: 334 LAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSAPSSKTNYVVLGSDAGPKKLETIRKFG 393

Query: 706 VKIMNEEQFLFLLQQ 720
           +K +NE+    L+++
Sbjct: 394 LKSINEDGLFELIRR 408


>gi|225563290|gb|EEH11569.1| chromosome transmission fidelity factor [Ajellomyces capsulatus
           G186AR]
          Length = 1071

 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L  + R + Q  V + G  V++  S KT+ +++G + G  KLE  ++ G
Sbjct: 334 LAGLSFVFTGVLDTLGREEGQSLVKRYGGKVTSAPSSKTNYVVLGSDAGPKKLETIRKFG 393

Query: 706 VKIMNEEQFLFLLQQ 720
           +K +NE+    L+++
Sbjct: 394 LKSINEDGLFELIRR 408


>gi|7493936|pir||T18306 replication factor C protein - Emericella nidulans
 gi|2258283|gb|AAB63574.1| replication factor C like protein [Emericella nidulans]
 gi|27735373|gb|AAB63523.2| replication factor C like protein [Emericella nidulans]
          Length = 1092

 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L  + R + Q  V + G  V+   S KT  +++G + G SKL    +  
Sbjct: 328 LAGLTFVFTGVLDTLGREEGQALVKRYGGKVTTAPSGKTSFVVLGSDAGPSKLATISKHK 387

Query: 706 VKIMNEEQFLFLLQQ 720
           +K ++EE    L+++
Sbjct: 388 LKTISEEGLFELIRR 402


>gi|67540266|ref|XP_663907.1| hypothetical protein AN6303.2 [Aspergillus nidulans FGSC A4]
 gi|40739497|gb|EAA58687.1| hypothetical protein AN6303.2 [Aspergillus nidulans FGSC A4]
 gi|259479483|tpe|CBF69746.1| TPA: Replication factor C like protein
           [Source:UniProtKB/TrEMBL;Acc:P78622] [Aspergillus
           nidulans FGSC A4]
          Length = 1092

 Score = 87.5 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L  + R + Q  V + G  V+   S KT  +++G + G SKL    +  
Sbjct: 328 LAGLTFVFTGVLDTLGREEGQALVKRYGGKVTTAPSGKTSFVVLGSDAGPSKLATISKHK 387

Query: 706 VKIMNEEQFLFLLQQ 720
           +K ++EE    L+++
Sbjct: 388 LKTISEEGLFELIRR 402


>gi|229175172|ref|ZP_04302688.1| DNA polymerase III subunit epsilon [Bacillus cereus MM3]
 gi|228608308|gb|EEK65614.1| DNA polymerase III subunit epsilon [Bacillus cereus MM3]
          Length = 280

 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 13/94 (13%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----- 692
             E +       K +VFTG L    R +A + +   G +    +++ T+ II+GD     
Sbjct: 187 ATEVSEDHPFYQKHIVFTGKLNAYTRIEAAQLIANKGGIPQNGINKNTNYIIIGDFDNVM 246

Query: 693 ---NPGSKLEKAQQL-----GVKIMNEEQFLFLL 718
              N  SKLEKA++L      ++I++EE+F+ +L
Sbjct: 247 IKGNKSSKLEKAEKLIAQGKELEIISEEEFMRML 280


>gi|296422835|ref|XP_002840964.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637191|emb|CAZ85155.1| unnamed protein product [Tuber melanosporum]
          Length = 1025

 Score = 87.2 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 3/101 (2%)

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
           N    +     V  + G  E  V  E  +     VFTG L+ + R   Q+ V + G  ++
Sbjct: 288 NYRDFKQRQGAVPIAPGSKEIPVGQENCLTGLTFVFTGILESLAREDGQQLVKKYGGKIT 347

Query: 679 AILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718
           +  S KT  +++G + G  KL    +L +K +NE+    L+
Sbjct: 348 SAPSTKTSYVVLGSDAGPKKLATIHKLKIKTINEDGLFKLI 388


>gi|307690045|ref|ZP_07632491.1| BRCT domain-containing protein [Clostridium cellulovorans 743B]
          Length = 200

 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
            + ++ +E + + FTG      R+  QE   + GA +S  ++ KT +++VG N GSKL+K
Sbjct: 115 ISSTNILEGEVVCFTGQ-SDYPRNTMQEIAMKNGAEISNSITLKTTMLVVGLNSGSKLDK 173

Query: 701 AQQLGVKIMNEEQFLFLL 718
           A + G+ I+++ +F+ +L
Sbjct: 174 AHEKGISIIDDTEFMKML 191


>gi|149248210|ref|XP_001528492.1| activator 1 95 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
 gi|146448446|gb|EDK42834.1| activator 1 95 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
          Length = 709

 Score = 86.8 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716
           +  + R+ A+    + GA V+  +S+ T  +++G + G SK++K ++LG K ++E+ FL 
Sbjct: 1   MPNLDRNYAESTAQRYGAKVTKSISKNTSFVVIGADAGWSKVDKIKKLGTKTIDEDGFLQ 60

Query: 717 LLQQ 720
           LL++
Sbjct: 61  LLEK 64


>gi|308235755|ref|ZP_07666492.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14018]
          Length = 301

 Score = 86.8 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 14/100 (14%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                   +      N+ +VFTG L+K+ R  AQ+ V  LG V+   ++++T+ +I+GDN
Sbjct: 201 IKPDEVVVDKDGFFYNRHVVFTGKLEKMLRKDAQQIVVNLGGVLDNSVTKQTNYLILGDN 260

Query: 694 ---------PGSKLEKAQQLG-----VKIMNEEQFLFLLQ 719
                      SK +KA++L      ++I++E  F  LL 
Sbjct: 261 DYNAILKGDKSSKHKKAEKLKIEGQDIEIIDEHTFYDLLN 300


>gi|281202783|gb|EFA76985.1| replication factor C subunit [Polysphondylium pallidum PN500]
          Length = 1512

 Score = 86.8 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKI 708
           K  + +G L+  +R + ++ + + G VV   +++K +  + G   G SKLEK ++ G+ I
Sbjct: 631 KNYLISGALESFERDELKDIIERHGGVVVTTVTKKLNFFVEGFEAGVSKLEKVKKYGIPI 690

Query: 709 MNEEQFLFLLQQ 720
           + E+  L  + +
Sbjct: 691 ITEDDVLDRINK 702


>gi|311114663|ref|YP_003985884.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019]
 gi|310946157|gb|ADP38861.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019]
          Length = 307

 Score = 86.8 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 14/100 (14%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                   +      N+ +VFTG L+K+ R  AQ+ V  LG V+   ++++T+ +I+GDN
Sbjct: 207 IKPDEVVVDKDGFFYNRHVVFTGKLEKMLRKDAQQIVVNLGGVLDNSVTKQTNYLILGDN 266

Query: 694 ---------PGSKLEKAQQLG-----VKIMNEEQFLFLLQ 719
                      SK +KA++L      ++I++E  F  LL 
Sbjct: 267 DYNAILKGDKSSKHKKAEKLKIEGQDIEIIDEHTFYDLLN 306


>gi|83769742|dbj|BAE59877.1| unnamed protein product [Aspergillus oryzae]
          Length = 1054

 Score = 86.8 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
                   + +     VFTG L  + R + Q  V + G  V+   S KT  +++G + G 
Sbjct: 314 AEIPVGAENCLAGLSFVFTGVLDTLGREEGQNLVKKYGGKVTGAPSSKTSYVVLGGDAGP 373

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQ 720
            KL+  +   +K +NEE    L+++
Sbjct: 374 KKLKTIRDHNLKTINEEGLFELIRR 398


>gi|154301785|ref|XP_001551304.1| hypothetical protein BC1G_10044 [Botryotinia fuckeliana B05.10]
 gi|150855706|gb|EDN30898.1| hypothetical protein BC1G_10044 [Botryotinia fuckeliana B05.10]
          Length = 1054

 Score = 86.8 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
               +   + +     VFTG L  I R +  E V + G  ++   S KT+ +++G + G 
Sbjct: 302 AEIPEGPENCLVGLTFVFTGMLDTISRDEGIELVKRYGGKITGAPSSKTNFVVLGKDAGP 361

Query: 696 SKLEKAQQLGVKIMNEEQFLFLL 718
           SKL K   L +K ++E     LL
Sbjct: 362 SKLRKIATLKIKTIDEHGIFHLL 384


>gi|71027899|ref|XP_763593.1| replication factor C large subunit [Theileria parva strain Muguga]
 gi|68350546|gb|EAN31310.1| replication factor C large subunit, putative [Theileria parva]
          Length = 1084

 Score = 86.8 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 16/107 (14%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN----- 693
             +  +S IE KK VFTG +  I R +A   V +LG +V + +S  TD ++ GD      
Sbjct: 367 ENEKSTSRIEGKKFVFTGEM-GIDRLEATLRVKKLGGIVVSAVSGVTDYLVYGDRLEDGR 425

Query: 694 ---PGSKLEKAQQL------GVKIMNEEQFLFLLQQYNTTLRIHDDD 731
               G K +KA +L       ++++NEEQFL LL Q N    +  D+
Sbjct: 426 PYQSGLKYKKAIELNNKKKRNIQLLNEEQFLQLL-QSNIDENVKTDN 471


>gi|317147094|ref|XP_001821879.2| replication factor C subunit 1 [Aspergillus oryzae RIB40]
          Length = 1056

 Score = 86.4 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
                   + +     VFTG L  + R + Q  V + G  V+   S KT  +++G + G 
Sbjct: 316 AEIPVGAENCLAGLSFVFTGVLDTLGREEGQNLVKKYGGKVTGAPSSKTSYVVLGGDAGP 375

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQ 720
            KL+  +   +K +NEE    L+++
Sbjct: 376 KKLKTIRDHNLKTINEEGLFELIRR 400


>gi|302873722|ref|YP_003842355.1| BRCT domain-containing protein [Clostridium cellulovorans 743B]
 gi|302576579|gb|ADL50591.1| BRCT domain protein [Clostridium cellulovorans 743B]
          Length = 271

 Score = 86.4 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
            + ++ +E + + FTG      R+  QE   + GA +S  ++ KT +++VG N GSKL+K
Sbjct: 186 ISSTNILEGEVVCFTGQ-SDYPRNTMQEIAMKNGAEISNSITLKTTMLVVGLNSGSKLDK 244

Query: 701 AQQLGVKIMNEEQFLFLL 718
           A + G+ I+++ +F+ +L
Sbjct: 245 AHEKGISIIDDTEFMKML 262


>gi|238496567|ref|XP_002379519.1| DNA replication factor C subunit Rfc1, putative [Aspergillus flavus
           NRRL3357]
 gi|220694399|gb|EED50743.1| DNA replication factor C subunit Rfc1, putative [Aspergillus flavus
           NRRL3357]
          Length = 852

 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG- 695
                   + +     VFTG L  + R + Q  V + G  V+   S KT  +++G + G 
Sbjct: 112 AEIPVGAENCLAGLSFVFTGVLDTLGREEGQNLVKKYGGKVTGAPSSKTSYVVLGGDAGP 171

Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQ 720
            KL+  +   +K +NEE    L+++
Sbjct: 172 KKLKTIRDHNLKTINEEGLFELIRR 196


>gi|104774090|ref|YP_619070.1| putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103423171|emb|CAI97964.1| Putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 261

 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 2/101 (1%)

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
              ++  L + +  I    K V S +  ++ V TG  ++  R++    +   G  V+  +
Sbjct: 161 QKLLDGDLAKATEIIDFTPKQVDSRLAGQRFVITGQFRQATRYELTSLIQSHGGKVTGSV 220

Query: 682 SRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           S  TD ++ G+  +   K +KA + G  ++  E  + LLQ+
Sbjct: 221 SGVTDYLLKGELDHVTGKCKKAAEKGTAVIGYEDLMLLLQK 261


>gi|168179165|ref|ZP_02613829.1| BRCT domain protein [Clostridium botulinum NCTC 2916]
 gi|226950614|ref|YP_002805705.1| BRCT domain-containing protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|182670000|gb|EDT81976.1| BRCT domain protein [Clostridium botulinum NCTC 2916]
 gi|226842284|gb|ACO84950.1| BRCT domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 242

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 116/262 (44%), Gaps = 29/262 (11%)

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
            R+K  V     NI+ L  + ++  FK+      +    DIF L++ +         I G
Sbjct: 8   NRIKIMVGEKGINIKELNDETINILFKN----GLLNNAYDIFLLKKEELYK------IDG 57

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
           F    V  L  SINK +N S E+FI++  I  V  + A  +A  +L++ +       +I 
Sbjct: 58  FTKEYVDELIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFLNFTDL------VID 111

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIE 648
            NN+D   L R+  + + I ++I       RN   +  L   V+P SI     N+     
Sbjct: 112 INNNDCDRLKRIDGMSEEIVESI------KRNKVLLVNLFMYVNPISIDEKNTNIKRY-- 163

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707
             K   TG L K      +E + +   +V   +++  D ++ GD   + K+  A++   +
Sbjct: 164 --KFAITGVLNKDT-SYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220

Query: 708 IMNEEQFLFLLQQYNTTLRIHD 729
           +++E Q + +L++     ++ +
Sbjct: 221 LISERQLVDILKEIKENNKMKN 242


>gi|23011878|ref|ZP_00052110.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 295

 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 95/224 (42%), Positives = 137/224 (61%), Gaps = 25/224 (11%)

Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426
           +++NATLHNE Y++G+ A G+ +R G DIRVGD V+V RAG+VIPKV+D+++++R  DA 
Sbjct: 1   MLSNATLHNEGYVQGVGADGEPIREGLDIRVGDTVIVVRAGDVIPKVMDVLLDKRPADAV 60

Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486
           PF FP  CP C S+ VR+LNP+T KL A  RCTGGL C AQ +ERLKHFVSR+ F++EG 
Sbjct: 61  PFVFPETCPACGSKAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNGFDLEGF 120

Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRR---------------------QQTSTTKIE 525
           G+  ++  F+    A  ++ PAD+F L+                       +       +
Sbjct: 121 GQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRAEGEPAPKKPTK 176

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569
                 D ++ NL  S+  RR+I L RF+F+LGI  +G   A++
Sbjct: 177 KKGEEEDKAIKNLLASLEARRSIPLNRFLFALGIPQIGESTAKA 220


>gi|148986116|ref|ZP_01819102.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           SP3-BS71]
 gi|149004079|ref|ZP_01828884.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69]
 gi|147757891|gb|EDK64900.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69]
 gi|147921830|gb|EDK72957.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           SP3-BS71]
 gi|301799167|emb|CBW31680.1| unnamed protein product [Streptococcus pneumoniae OXC141]
          Length = 307

 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 14/100 (14%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-- 692
              +   N           FTG L+++ R +A +    +G +    +++ T+I++VG+  
Sbjct: 208 EEEKAAMNPDHYFYGLYFCFTGKLERMTRKEANKAAALVGGIPEKGVTKHTNILVVGEQD 267

Query: 693 -------NPGSKLEKAQQL-----GVKIMNEEQFLFLLQQ 720
                     SK++KAQ L      ++IM E  F+ LL++
Sbjct: 268 WRVVGTDGLSSKMKKAQTLLEKGQDIEIMTENDFIRLLEE 307


>gi|123395219|ref|XP_001300705.1| differentiation specific element binding protein [Trichomonas
           vaginalis G3]
 gi|121881785|gb|EAX87775.1| differentiation specific element binding protein, putative
           [Trichomonas vaginalis G3]
          Length = 876

 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 8/81 (9%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII-----VGDNPGSKLEKA 701
           +E    V TGT+  I R   ++ + + G  ++  +S KTD++I     VG    SKL +A
Sbjct: 52  LEGITFVATGTMPSITRETLKDIIEKYGGRLTTSISGKTDVVIRGCIEVGP---SKLAQA 108

Query: 702 QQLGVKIMNEEQFLFLLQQYN 722
           ++ G+ I++EE     LQ  N
Sbjct: 109 RERGLLIIDEESLFQYLQSTN 129


>gi|188588313|ref|YP_001920971.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498594|gb|ACD51730.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 309

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 14/84 (16%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSK 697
             ++ +VFTG L  + R +A   V +LG  V + +++KT  ++           D   +K
Sbjct: 221 FTDEVVVFTGGLASMTRDEAIRLVRKLGGSVGSSVTKKTTYLVTNTKDIDNLHRDEMSTK 280

Query: 698 LEKAQQL-----GVKIMNEEQFLF 716
           L KA  L     G+K +NE  FL 
Sbjct: 281 LRKAVDLKNKGQGIKCLNEGAFLK 304


>gi|298252856|ref|ZP_06976650.1| NAD-dependent DNA ligase [Gardnerella vaginalis 5-1]
 gi|297533220|gb|EFH72104.1| NAD-dependent DNA ligase [Gardnerella vaginalis 5-1]
          Length = 196

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 14/100 (14%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                   +      N+ +VFTG L+K+ R  A + V  LG V+   ++++T+ +I+GDN
Sbjct: 96  IKPDEVVVDKDGFFYNRHVVFTGKLEKMLRKDAMQIVVNLGGVLDNSVTKQTNYLILGDN 155

Query: 694 ---------PGSKLEKAQQLG-----VKIMNEEQFLFLLQ 719
                      SK +KA++L      ++I++E  F  LL+
Sbjct: 156 DYNAILKDEKSSKHKKAEKLKLEGQDIEIIDERTFYDLLE 195


>gi|33861216|ref|NP_892777.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33639948|emb|CAE19118.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 249

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 106/307 (34%), Gaps = 64/307 (20%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           LE+ + ++D  Y +    +I D ++D L++    I          +              
Sbjct: 5   LEERLEWYDHNY-RIGNSLITDKQFDQLEKNLLRIDPDCDYFTNKKS------------- 50

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
                    +P  SL+K      + +F+  +               +EPKIDG  I ++Y
Sbjct: 51  ---------LPLPSLKK----NSIDEFLEGLL--------PDTRLLIEPKIDGIAIALQY 89

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
             G    +  R     G DV+  I  I  IP  L L +  I+++RGE++           
Sbjct: 90  RDGTLEKSISR----KGIDVTNKIAEIQDIP--LKLPVSGILQIRGELFTPNRSPNFSQR 143

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
                 R    +P   +    + +N                         QYE +Q ++ 
Sbjct: 144 IASGFVRAAAGSPEGISFCGFQIINGK---------------------LNQYETIQYLKK 182

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE-RARSP 322
           LGF     ++  N    +  +  +    +    Y  DG+V K++   LQ    + +   P
Sbjct: 183 LGF-NTPDIKSCNYTSQVQVFRKQWLDKKIFTEYPTDGIVVKINSRKLQLIREKSKIDYP 241

Query: 323 RWMISHK 329
            W I+ K
Sbjct: 242 HWQIAIK 248


>gi|15894025|ref|NP_347374.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum ATCC
           824]
 gi|15023620|gb|AAK78714.1|AE007589_2 DNA polymerase III epsilon subunit (3'-5' exonuclease) containing
           BRCT domain [Clostridium acetobutylicum ATCC 824]
          Length = 306

 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 34/176 (19%)

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +L   ++   I++ L          ++ +   +   +       +   +    +  I  +
Sbjct: 150 ALACSNIMLSISKEL--KCKDITEISKLLGVTVGKVDSKGYKPSQTKGIAVRTSDRI--Y 205

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +   +   A E L                 E +N+ +VFTG L  + R +A   V +LG 
Sbjct: 206 FSKKK--SAFERLKA--------------DEFKNEVVVFTGRLDSMSRDEAMGLVRRLGG 249

Query: 676 VVSAILSRKTDIIIVG---------DNPGSKLEKAQQL-----GVKIMNEEQFLFL 717
              + +++KT I++           +   +KL++A  L      +K +NEE+FL +
Sbjct: 250 TAGSSVTKKTTILVTNMKNIKNLRREEMSNKLKRASDLNARGQNIKFLNEEEFLKI 305


>gi|170755519|ref|YP_001782825.1| BRCT domain-containing protein [Clostridium botulinum B1 str. Okra]
 gi|169120731|gb|ACA44567.1| BRCT domain protein [Clostridium botulinum B1 str. Okra]
          Length = 242

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 117/262 (44%), Gaps = 29/262 (11%)

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
            R+K+ V     NI+ L  + ++  F++      +    DIF L++ +         I G
Sbjct: 8   NRIKNMVGEKGINIKELNDETINILFEN----GFLNNAYDIFLLKKEELYK------IDG 57

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
           F    V  L  SINK +N + E+FI++  I  V  + A  +A  +L++ +       +I 
Sbjct: 58  FTKEYVDELIKSINKTKNCNFEKFIYACSIPKVTEKEAIVIAHTFLNFTDL------VID 111

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIE 648
            NN+D   L R+  + + I ++I       RN   +  L   V+P SI     N+     
Sbjct: 112 INNNDCDRLKRIDGMSEEIVESI------KRNKVLLVNLFMYVNPISIDEKNANIKRY-- 163

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707
             K   TG L K      +E + +   +V   +++  D ++ GD   + K+  A++   +
Sbjct: 164 --KFSITGVLNKDT-SYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220

Query: 708 IMNEEQFLFLLQQYNTTLRIHD 729
           +++E Q + +L++     ++ +
Sbjct: 221 LISERQLVDILKEIKENNKMKN 242


>gi|153938097|ref|YP_001392537.1| BRCT domain-containing protein [Clostridium botulinum F str.
           Langeland]
 gi|152933993|gb|ABS39491.1| BRCT domain protein [Clostridium botulinum F str. Langeland]
 gi|295320523|gb|ADG00901.1| BRCT domain protein [Clostridium botulinum F str. 230613]
          Length = 242

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 115/262 (43%), Gaps = 29/262 (11%)

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
            R+K  V     NI+ L  + ++  FK+      +    DIF L++ +         I G
Sbjct: 8   NRIKSMVGEKGINIKELNDETINILFKN----GLLNNAYDIFLLKKEELYK------IDG 57

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
           F    V  L  SINK +N S E+FI++  I  V  + A  +A  +L+  +       +I 
Sbjct: 58  FTKEYVDELIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFLNLTDL------VID 111

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIE 648
            NN+D   L R+  + + I ++I       RN   +  L   V+P SI     N+     
Sbjct: 112 INNNDCDRLKRIDGMSEEIVESI------KRNKVLLVNLFMYVNPISIDEKNANIKRY-- 163

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707
             K   TG L K      +E + +   +V   +++  D ++ GD   + K+  A++   +
Sbjct: 164 --KFSITGVLNKDT-SYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220

Query: 708 IMNEEQFLFLLQQYNTTLRIHD 729
           +++E Q + +L++     ++ +
Sbjct: 221 LISERQLVDILKEIKENNKMKN 242


>gi|145640787|ref|ZP_01796370.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
 gi|145274713|gb|EDK14576.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.4-21]
          Length = 191

 Score = 84.5 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 82/216 (37%), Positives = 126/216 (58%), Gaps = 27/216 (12%)

Query: 339 LLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVG 398
           + D++ Q+GRTG +TPVA+LEPV + G  ++NATLHN D I+ L           +I +G
Sbjct: 1   MNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERL-----------NIAIG 49

Query: 399 DRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
           D V+++RAG+VIP+++ ++   R  +A+P  FP+ CP+C S+++R          A  RC
Sbjct: 50  DTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIEGE------AVARC 103

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
           TGGL C+AQ+ E LKHFVSR A +I+G+G + ++     E     I  PAD+F L     
Sbjct: 104 TGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRE----LIHTPADLFKL----- 154

Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
              T +  +   G  S  N  +S+   ++ +L RFI
Sbjct: 155 -DLTTLTRLERMGAKSAENALNSLENAKSTTLARFI 189


>gi|317503610|ref|ZP_07961630.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
 gi|315665271|gb|EFV04918.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
          Length = 284

 Score = 84.5 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           P      +N  +    K++V TG L+    R    + +   GA ++  +S++TDI+IVG 
Sbjct: 186 PLSPEEVENKETPFFMKRVVLTGNLETFPARETIAKMLKAYGADINTSISKRTDIVIVGK 245

Query: 693 NPG-SKLEK-----AQQLGVKIMNEEQFLFLLQQYNTT 724
             G SK++K     AQ   ++++ E + L +++++N  
Sbjct: 246 GAGPSKMQKIEELQAQGHNLRVIEEPELLSIMKEFNIE 283


>gi|260578055|ref|ZP_05845977.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
           43734]
 gi|258603795|gb|EEW17050.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
           43734]
          Length = 260

 Score = 84.5 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 49/93 (52%), Gaps = 7/93 (7%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD- 692
                 E ++   I  + +  TG ++   + +  + +   G VV+  +++KT ++IVG+ 
Sbjct: 168 VPETNEEADIDGPIYGQTVCVTGDVEPYDKGEVWDMIASRGGVVAKNVTKKTTMLIVGEW 227

Query: 693 -NPGSKLEKAQQLG-----VKIMNEEQFLFLLQ 719
            +  SK ++A++L      ++I+  ++FL L++
Sbjct: 228 HSMTSKEKRARELQDKGQELQIIGFQEFLQLIK 260


>gi|68535854|ref|YP_250559.1| hypothetical protein jk0779 [Corynebacterium jeikeium K411]
 gi|68263453|emb|CAI36941.1| hypothetical protein jk0779 [Corynebacterium jeikeium K411]
          Length = 260

 Score = 84.5 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 49/93 (52%), Gaps = 7/93 (7%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD- 692
                 E ++   I  + +  TG ++   + +  + +   G VV+  +++KT ++IVG+ 
Sbjct: 168 VPETNEEADIDGPIYGQTVCVTGDVEPYDKGEVWDMIASRGGVVAKNVTKKTTMLIVGEW 227

Query: 693 -NPGSKLEKAQQLG-----VKIMNEEQFLFLLQ 719
            +  SK ++A++L      ++I+  ++FL L++
Sbjct: 228 HSMTSKEKRARELQDKGQELQIIGFQEFLQLIK 260


>gi|116514157|ref|YP_813063.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093472|gb|ABJ58625.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 261

 Score = 84.5 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 621 NICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           N    + L    L + +  I    K V S +  ++ V TG  ++  R++    +   G  
Sbjct: 156 NNIVYQKLRDGDLAKATEIIDFTPKQVDSRLAGQRFVITGQFRQATRYELTSLIQSHGGK 215

Query: 677 VSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           V+  +S  TD ++ G+  +   K +KA + G  ++  E  + LLQ+
Sbjct: 216 VTGSVSGVTDYLLKGELDHVTGKCKKAAEKGTAVIGYEDLMLLLQK 261


>gi|147867164|emb|CAN82054.1| hypothetical protein VITISV_029381 [Vitis vinifera]
          Length = 783

 Score = 84.5 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-P 694
                +  S  +     V +GTL  ++R +A++ + + G  V+       + ++  ++  
Sbjct: 186 EKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS-----NFLLCDEDIG 240

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLL 718
           G+K  KA++LG   + E+    ++
Sbjct: 241 GNKSAKAKELGTAFLTEDGLFDMI 264


>gi|325508152|gb|ADZ19788.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum EA
           2018]
          Length = 317

 Score = 84.5 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 34/176 (19%)

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +L   ++   I++ L          ++ +   +   +       +   +    +  I  +
Sbjct: 161 ALACSNIMLSISKEL--KCKDITEISKLLGVTVGKVDSKGYKPSQTKGIAVRTSDRI--Y 216

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +   +   A E L                 E +N+ +VFTG L  + R +A   V +LG 
Sbjct: 217 FSKKK--SAFERLKA--------------DEFKNEVVVFTGRLDSMSRDEAMGLVRRLGG 260

Query: 676 VVSAILSRKTDIIIVG---------DNPGSKLEKAQQL-----GVKIMNEEQFLFL 717
              + +++KT I++           +   +KL++A  L      +K +NEE+FL +
Sbjct: 261 TAGSSVTKKTTILVTNMKNIKNLRREEMSNKLKRASDLNARGQNIKFLNEEEFLKI 316


>gi|115383954|ref|XP_001208524.1| hypothetical protein ATEG_01159 [Aspergillus terreus NIH2624]
 gi|114196216|gb|EAU37916.1| hypothetical protein ATEG_01159 [Aspergillus terreus NIH2624]
          Length = 1053

 Score = 84.5 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L  + R +    V Q G  V    S KT  +++G + G SKL   +   
Sbjct: 337 LAGLSFVFTGVLDTLGRDEGVSLVKQYGGRVVGTPSSKTSYVVLGHDAGPSKLRTIKDNN 396

Query: 706 VKIMNEEQFLFLLQQ 720
           +K +NE+    L+++
Sbjct: 397 LKTINEQGLFELIRR 411


>gi|148381134|ref|YP_001255675.1| BRCT domain protein [Clostridium botulinum A str. ATCC 3502]
 gi|153933573|ref|YP_001385509.1| BRCT domain-containing protein [Clostridium botulinum A str. ATCC
           19397]
 gi|153936307|ref|YP_001388915.1| BRCT domain-containing protein [Clostridium botulinum A str. Hall]
 gi|148290618|emb|CAL84747.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152929617|gb|ABS35117.1| BRCT domain protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932221|gb|ABS37720.1| BRCT domain protein [Clostridium botulinum A str. Hall]
          Length = 242

 Score = 84.1 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 116/262 (44%), Gaps = 29/262 (11%)

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
            R+K  V     NI+ L  + ++  FK+      +    DIF L++ +         I G
Sbjct: 8   NRIKSMVGEKGINIKELNDETINILFKN----GLLNNAYDIFLLKKEELYK------IDG 57

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
           F    V  L  SINK +N S E+FI++  I  V  + A  +A  +L++ +       +I 
Sbjct: 58  FTKEYVDELIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFLNFTDL------VID 111

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIE 648
            NN+D   L R+  + + I ++I       RN   +  L   V+P SI     N+     
Sbjct: 112 INNNDCDRLKRIDGMSEEIVESI------KRNKVLLVNLFMYVNPISIDEKNTNIKRY-- 163

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707
             K   TG L K      +E + +   +V   +++  D ++ GD   + K+  A++   +
Sbjct: 164 --KFSITGVLNKDT-SYYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220

Query: 708 IMNEEQFLFLLQQYNTTLRIHD 729
           +++E Q + +L++     +I +
Sbjct: 221 LISERQLVDILKEIKENNKIKN 242


>gi|219113609|ref|XP_002186388.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583238|gb|ACI65858.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 942

 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 9/105 (8%)

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687
           L  +++ S    +K     +     VF+G L  + R   QE V  LG  ++  +S  T+ 
Sbjct: 182 LEPKLTQSSFNVDKAAPECLRGCTFVFSGVLPNLSREDGQEMVKTLGGRITGAVSSLTNY 241

Query: 688 IIVGDN--------PGSKLEKAQQLGVKIM-NEEQFLFLLQQYNT 723
           ++VG+          GSK ++A Q G  I+  EE F  LLQQYN 
Sbjct: 242 LVVGEELEDGRVYTEGSKYKRAVQEGTHIVQGEEAFYGLLQQYND 286


>gi|325125846|gb|ADY85176.1| DNA polymerase III, epsilon subunit [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 286

 Score = 83.7 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 621 NICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           N    + L    L + +  I    K + S +  ++ V TG  ++  R++    +   G  
Sbjct: 181 NNIVYQKLRDGDLAKATEIIDFTPKQIDSRLAGQRFVITGQFRQATRYELTSLIQSHGGK 240

Query: 677 VSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           V+  +S  TD ++ G+  +   K +KA + G  ++  E  + LLQ+
Sbjct: 241 VTGSVSGVTDYLLKGELDHVTGKCKKAAEKGTAVIGYEDLMLLLQK 286


>gi|294932355|ref|XP_002780231.1| replication factor C subunit, putative [Perkinsus marinus ATCC
           50983]
 gi|239890153|gb|EER12026.1| replication factor C subunit, putative [Perkinsus marinus ATCC
           50983]
          Length = 829

 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 14/102 (13%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-- 692
                          K LVFTG L++++R  A       GA V+  +S +T  ++VG   
Sbjct: 151 KSPPPAVTDEKPFNGKTLVFTGNLERLERDLAVTKAKLAGAKVTTAVSGRTTYLVVGSVL 210

Query: 693 ------NPGSKLEKAQQL------GVKIMNEEQFLFLLQQYN 722
                   GSK +K Q+L      G  ++ E +F+  LQ+  
Sbjct: 211 EDGRPIEEGSKFKKTQELRAAGKPGPSLLQESEFIEKLQKAG 252


>gi|313124719|ref|YP_004034978.1| DNA polymerase iii polc-type [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312281282|gb|ADQ62001.1| DNA polymerase III PolC-type [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 298

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 50/106 (47%), Gaps = 14/106 (13%)

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           +   + +    + +       + +VFTG L+++ R  A + V  LG ++   +++ T+ +
Sbjct: 191 IDIGAITATTDDIDEDGFFYGRHVVFTGKLERMARKDAMQTVVNLGGILDNSVNKNTNYL 250

Query: 689 IVGDN---------PGSKLEKAQQLG-----VKIMNEEQFLFLLQQ 720
           I+G+N           SK +KA++L      + I++E  F  ++  
Sbjct: 251 ILGNNDYNAVLHGEKSSKHKKAEKLKLEGQDIDIIDEFTFYDIIND 296


>gi|187932792|ref|YP_001886212.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str.
           Eklund 17B]
 gi|187720945|gb|ACD22166.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str.
           Eklund 17B]
          Length = 309

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 14/84 (16%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSK 697
             ++ +VFTG L  + R +A   V +L   V + +++KT  ++           D   +K
Sbjct: 221 FTDEVVVFTGGLASMTRDEAIRLVRKLNGSVGSSVTKKTTYLVTNTKNIDDLHRDEMSNK 280

Query: 698 LEKAQQL-----GVKIMNEEQFLF 716
           L KA  L     G+K +NEE FL 
Sbjct: 281 LRKAVDLKDKGQGIKFLNEEAFLK 304


>gi|168494862|ref|ZP_02719005.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|168494874|ref|ZP_02719017.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|168495024|ref|ZP_02719167.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575147|gb|EDT95675.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575215|gb|EDT95743.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575301|gb|EDT95829.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
          Length = 307

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 14/100 (14%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-- 692
              +   N           FTG L+++ R +A +    +G +    +++ T+I++VG+  
Sbjct: 208 EEEKAAMNPDHYFYGLYFCFTGKLERMTRKEANKATALVGGIPEKGVTKHTNILVVGEQD 267

Query: 693 -------NPGSKLEKAQQL-----GVKIMNEEQFLFLLQQ 720
                     SK++KAQ L      ++IM E  F+ LL++
Sbjct: 268 WRVVGTDGLSSKMKKAQTLLEKGQDIEIMTENDFIRLLEE 307


>gi|120599313|ref|YP_963887.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1]
 gi|120559406|gb|ABM25333.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1]
          Length = 298

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 15/89 (16%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---------NPG 695
            E+  + +VFTG L  + R +A E   +LG  + + +S+KTD ++VG+            
Sbjct: 210 GELYGQTIVFTGELS-MTRAEAFEAAAELGLEIKSGVSKKTDYLVVGEQDESLVGPSGIS 268

Query: 696 SKLEKAQQL-----GVKIMNEEQFLFLLQ 719
           SK  KAQ L      ++I++E++F+ L++
Sbjct: 269 SKQLKAQDLIDEGFDIQILDEDEFMELIE 297


>gi|168490120|ref|ZP_02714319.1| exonuclease family protein [Streptococcus pneumoniae SP195]
 gi|183571500|gb|EDT92028.1| exonuclease family protein [Streptococcus pneumoniae SP195]
          Length = 307

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 14/100 (14%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-- 692
              +   N           FTG L+++ R +A +    +G +    +++ T+I++VG+  
Sbjct: 208 EEEKAAMNPDHYFYGLYFCFTGKLERMTRKEANKATALVGGIPEKGVTKHTNILVVGEQD 267

Query: 693 -------NPGSKLEKAQQL-----GVKIMNEEQFLFLLQQ 720
                     SK++KAQ L      ++IM E  F+ LL++
Sbjct: 268 WRVVGTDGLSSKMKKAQTLLEKGQDIEIMTENDFIRLLEE 307


>gi|154416257|ref|XP_001581151.1| transcription factor [Trichomonas vaginalis G3]
 gi|121915376|gb|EAY20165.1| transcription factor, putative [Trichomonas vaginalis G3]
          Length = 687

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQL 704
           +     V TGT+  ++R + ++ +T+ G  V++ +S KTD ++VG  +    K++  ++ 
Sbjct: 50  LLGNTFVPTGTMVSLKREQVKDLITKYGGKVTSSISGKTDCVVVGCIEVGPKKIQTCREK 109

Query: 705 GVKIMNEEQFLFLLQQYN 722
            +  ++E+   +L+ + +
Sbjct: 110 NIPTIDEDGLFYLIARSD 127


>gi|72042956|ref|XP_797949.1| PREDICTED: similar to replication factor C large subunit
           [Strongylocentrotus purpuratus]
 gi|115960148|ref|XP_001189165.1| PREDICTED: similar to replication factor C large subunit
           [Strongylocentrotus purpuratus]
          Length = 906

 Score = 82.2 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-S 696
              K     +     V TG ++   + + +  V Q G  ++  +S+KT  +++G  PG S
Sbjct: 316 EEPKGADGCLSGLTFVLTGVIEYFDKDQIKTMVEQHGGRLTTSVSKKTSHLVIGREPGES 375

Query: 697 KLEK 700
           K+ K
Sbjct: 376 KVAK 379


>gi|145552994|ref|XP_001462172.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124430010|emb|CAK94799.1| unnamed protein product [Paramecium tetraurelia]
          Length = 972

 Score = 82.2 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 11/111 (9%)

Query: 618 NPRNICAVE-ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
             +N   ++    K++        KN    ++   +V +G L    R K ++++   GA 
Sbjct: 247 EKQNSKVLKPENKKQIEQEHQPEFKNDPDLLKGLTIVLSGLLNVCSRDKLEQFLKNNGAK 306

Query: 677 VSAILSRKTDIIIV---------GDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           V+  +S KT  +IV         G+  G+K ++A + G KI+ E +    L
Sbjct: 307 VTGSISGKTSYLIVADKLEDGRKGEE-GNKFKEATKKGTKIVRESELNDWL 356


>gi|282881940|ref|ZP_06290585.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B]
 gi|281298215|gb|EFA90666.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B]
          Length = 298

 Score = 81.8 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 14/100 (14%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 E +  +   N+ +VFTG L+K+ R  A + V  LG ++   +++ T+ +I+G+N
Sbjct: 198 IHPTEVEIDEDNFFFNRHVVFTGKLEKMIRQDAMQIVVNLGGILDNSVTKSTNYLILGNN 257

Query: 694 ---------PGSKLEKAQQLG-----VKIMNEEQFLFLLQ 719
                      SK +KA++L      ++I++E  F  L++
Sbjct: 258 DYNAILKGEKSSKHKKAEKLKLEGQDIEIIDEFTFYDLIE 297


>gi|301111033|ref|XP_002904596.1| replication factor C subunit 1 [Phytophthora infestans T30-4]
 gi|262095913|gb|EEY53965.1| replication factor C subunit 1 [Phytophthora infestans T30-4]
          Length = 770

 Score = 81.8 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 15/119 (12%)

Query: 626 EALLKEVSPSIGRHE---KNVSSE----IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
           +  + EV P   + E   K V +     ++ K   F+G L+ + R  A   V   G  V+
Sbjct: 61  DEEMPEVKPEAKKEEGALKKVPAPCSGCLDGKTFAFSGVLESLSREDAVHLVKSCGGSVA 120

Query: 679 AILSRKTDIIIVGD------NP--GSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
             ++R T  +++G       N   GSK ++A    V+I+ + +F  L+ +  T  +  D
Sbjct: 121 NSITRSTKYLVIGSTLEQGGNVTDGSKYKEAVAKNVRILTQNEFYNLITEAATAQQTQD 179


>gi|299142830|ref|ZP_07035958.1| exonuclease [Prevotella oris C735]
 gi|298575698|gb|EFI47576.1| exonuclease [Prevotella oris C735]
          Length = 284

 Score = 81.8 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           P      +N  +    K++V TG L+    R    E +   GA ++  +S++TDI+IVG 
Sbjct: 186 PLSPEEVENKETPFFMKRVVLTGNLEMFPARETIAEVLKAYGADINTSISKRTDIVIVGK 245

Query: 693 NPG-SKLEK-----AQQLGVKIMNEEQFLFLLQQYNTT 724
             G SK++K     AQ   ++++ E + L +++++N  
Sbjct: 246 GAGPSKMQKIEELQAQGHNLRVIEEPELLSIMKEFNIE 283


>gi|157413113|ref|YP_001483979.1| hypothetical protein P9215_07781 [Prochlorococcus marinus str. MIT
           9215]
 gi|157387688|gb|ABV50393.1| Hypothetical protein P9215_07781 [Prochlorococcus marinus str. MIT
           9215]
          Length = 249

 Score = 81.8 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 110/308 (35%), Gaps = 64/308 (20%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           LE+ I ++DD Y   +  +I D ++D L++                              
Sbjct: 5   LEERIEWYDDNYRNGNA-LISDKQFDQLEKNLLRTNPNCDYFK----------------- 46

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               K    +P  SLEK    + + +F+  +               +EPKIDG  + ++Y
Sbjct: 47  ---KKNKLVLP--SLEK----DSIDEFLKGLL--------VDTRLLIEPKIDGCAVALQY 89

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
             G    A  R     G D+++ +  +  IP  L L    +++VRGE+Y           
Sbjct: 90  RDGTLEKAISR----KGVDITSKLIKVQDIPNNLPL--RGVLQVRGELYAPN-------- 135

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
                 + P  + R A+  +  +   ++   +  F +             QYE  + +  
Sbjct: 136 ------QSPNISQRIASGFLRAKEGFSERLSFCAFQILN-------STLNQYESKKNLSK 182

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA-RSP 322
           LGF +   +   N    +  +  +    +    Y  DG+V K++   LQ    +     P
Sbjct: 183 LGFTIPQDI-SCNFTSQVEVFRKQWLEGKLFSKYPTDGIVVKINSRKLQLIREKSNLDYP 241

Query: 323 RWMISHKF 330
            W ++ K 
Sbjct: 242 YWQVAIKR 249


>gi|157311015|ref|YP_001469010.1| gp012 [Lactococcus phage KSY1]
 gi|108861355|gb|ABG21554.1| gp012 [Lactococcus phage KSY1]
          Length = 471

 Score = 81.8 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 65/470 (13%), Positives = 137/470 (29%), Gaps = 92/470 (19%)

Query: 25  EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84
            +E+       Y+   P++ D+ YD L          F +L                   
Sbjct: 4   VKELQEA----YEQGTPLMTDAAYDVLVGDN----EEFTELEDETYV------------- 42

Query: 85  SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144
               + H++   +  K  N+++         + + K    +     +PK DG    +  E
Sbjct: 43  ----IKHAVFMGTCPKTRNVKEF--------KLYCKGLLGTTNVVFQPKFDGVSGELIVE 90

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204
            GK    + RG+G+ G+D+S     +     ++        E                  
Sbjct: 91  HGKITAISSRGNGNFGQDLSDLKDILFNDVVIMPTVRAIYGEF----------------- 133

Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
            +     P    RN  SG L +    +   +L+F  +   K  +   +    M  ++   
Sbjct: 134 -VWRNDNPSQKDRNLVSGYLNK-KVHNKEPHLDFIAY---KAIDSNGRVMDFMQSQLYTT 188

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324
           G   ++     +               R                       G   ++   
Sbjct: 189 GIKWSDCAILTDELEIPNFDGRYPDIKRD----------------------GTIIKNSVD 226

Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384
           + + K   +   T +  +  +  ++   +  A+LEPV IG   +++ TL           
Sbjct: 227 IFALKPEPEAGITTITGVTWKKCKSK-FSATAQLEPVTIGAVNVSSVTLP---------- 275

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
                    D+ +GD+V++ R G+VIP +  ++ +    ++ P    S C  C       
Sbjct: 276 --LSYIKDMDLMIGDKVMISRRGDVIPCIEFLVEH--TEESSPIINDSKCEYCGGHFHLY 331

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
                 +                +    K   +   + +           
Sbjct: 332 GKKLLCENENCVSYLVDYENKVLETMMSKVKGANTKWFMTEAKGNPGMIL 381


>gi|126696079|ref|YP_001090965.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9301]
 gi|126543122|gb|ABO17364.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9301]
          Length = 249

 Score = 81.8 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 108/308 (35%), Gaps = 64/308 (20%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           LE+ I ++DD Y   +  +I D ++D L++                              
Sbjct: 5   LEERIEWYDDNYRNGNA-LISDKQFDQLEKNLLRTNPNCDYFK----------------- 46

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               K    +P  SLEK    + + +F+  +               +EPKIDG  + ++Y
Sbjct: 47  ---KKNKLVLP--SLEK----DSIDEFLKGLL--------ADTRLLIEPKIDGCAVALQY 89

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
             G    A  R     G DV++ +  I  IP  L L    +++VRGE+Y           
Sbjct: 90  RDGTLEKAISR----KGTDVTSKLIKIQDIPNNLPL--QGVLQVRGELYAPN-------- 135

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
                 + P  + R A+  +  +   +    +  F +             QYE  + +  
Sbjct: 136 ------QSPNISQRIASGFLRAKEGFSQSLSFCAFQILN-------STLNQYESKKSLSK 182

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA-RSP 322
           LGF +   +   N    +  +       +    Y  DG+V K++   LQ    +     P
Sbjct: 183 LGFKIPQDI-SCNFTSQVEVFRKRWLEGKLFSEYPTDGIVVKINSRKLQLIREKSNLDYP 241

Query: 323 RWMISHKF 330
            W ++ K 
Sbjct: 242 YWQVAIKR 249


>gi|19113399|ref|NP_596607.1| DNA replication factor C complex subunit Rfc1 [Schizosaccharomyces
           pombe 972h-]
 gi|30913227|sp|O60182|RFC1_SCHPO RecName: Full=Replication factor C subunit 1; Short=Replication
           factor C1
 gi|3116125|emb|CAA18875.1| DNA replication factor C complex subunit Rfc1 [Schizosaccharomyces
           pombe]
          Length = 934

 Score = 81.8 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     V TG L+ + R +A + + Q G  V+   S +TD I++G+N G  K+E  +Q  
Sbjct: 241 LSGISFVITGILETLTRQEATDLIKQYGGKVTGAPSVRTDFILLGENAGPRKVETIKQHK 300

Query: 706 VKIMNEEQFLFLL 718
           +  +NE+   +L+
Sbjct: 301 IPAINEDGLFYLI 313


>gi|207109554|ref|ZP_03243716.1| NAD-dependent DNA ligase LigA [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 87

 Score = 81.4 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
          +++KE       ++     YY    PI+ D+ YD L +   A     P+  ++   N P 
Sbjct: 3  KSQKEYLERIAYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQA---NSPT 59

Query: 76 NKIGGEMNLSLFK 88
           K+G     S  K
Sbjct: 60 QKVGAITTNSFNK 72


>gi|254526990|ref|ZP_05139042.1| NAD-dependent DNA ligase N-terminal domain protein [Prochlorococcus
           marinus str. MIT 9202]
 gi|221538414|gb|EEE40867.1| NAD-dependent DNA ligase N-terminal domain protein [Prochlorococcus
           marinus str. MIT 9202]
          Length = 249

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 109/308 (35%), Gaps = 64/308 (20%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           LE+ I ++DD Y   +  +I D ++D L++                              
Sbjct: 5   LEERIEWYDDNYRNGNA-LISDKQFDQLEKNLLRTNPNCDYFK----------------- 46

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               K    +P  SLEK    + + +F+  +               +EPKIDG  + ++Y
Sbjct: 47  ---KKNKLVLP--SLEK----DSIDEFLKGLL--------VDTRLLIEPKIDGCAVALQY 89

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
             G    A  R     G DV+  +  I  IP  L L    +++VRGE+Y           
Sbjct: 90  RDGTLEKAISR----KGVDVTTKLIKIQDIPNNLPL--RGVLQVRGELYAPN-------- 135

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
                 + P  + R A+  +  +   ++   +  F +             QYE  + +  
Sbjct: 136 ------QSPNISQRIASGFLRAKEGFSERLSFCAFQILN-------STLNQYESKKNLSK 182

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA-RSP 322
           LGF +   +   N    +  +  +    +    Y  DG+V K++   LQ    +     P
Sbjct: 183 LGFTITQDI-SCNFTSQVDVFRKQWLEGKLFSKYPTDGIVVKINSRKLQLIREKSNLDYP 241

Query: 323 RWMISHKF 330
            W ++ K 
Sbjct: 242 YWQVAIKR 249


>gi|126651945|ref|ZP_01724137.1| DNA polymerase III subunit epsilon [Bacillus sp. B14905]
 gi|126591214|gb|EAZ85323.1| DNA polymerase III subunit epsilon [Bacillus sp. B14905]
          Length = 132

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 8/95 (8%)

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           +        +++     +K++VFTG L  + R +A + V   G  +   ++++TD +I+G
Sbjct: 30  LDIFFSDPTESLPHPFYHKQIVFTGALSTMTRSEAAKQVKACGGFLQGTVTQQTDFVILG 89

Query: 692 DN---PGSKLEKAQQL-----GVKIMNEEQFLFLL 718
           D      +K  KA+QL      ++I+ E+ FL+L+
Sbjct: 90  DKRRGISTKQRKAEQLMNYGEDIQILIEDDFLWLI 124


>gi|66395669|ref|YP_240034.1| ORF013 [Staphylococcus phage 47]
 gi|209363557|ref|YP_002267975.1| hypothetical protein phi2958PVL_gp05 [Staphylococcus phage
           phi2958PVL]
 gi|257428268|ref|ZP_05604666.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|282905892|ref|ZP_06313747.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282919259|ref|ZP_06326994.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           C427]
 gi|284024544|ref|ZP_06378942.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus 132]
 gi|62636093|gb|AAX91204.1| ORF013 [Staphylococcus phage 47]
 gi|208973058|dbj|BAG74374.1| hypothetical protein [Staphylococcus phage phi2958PVL]
 gi|257275109|gb|EEV06596.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|282317069|gb|EFB47443.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           C427]
 gi|282331184|gb|EFB60698.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
          Length = 306

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 15/104 (14%)

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
           K++         + +  +  K + FTG L+   R++  + VT +G+V  + + + T+ ++
Sbjct: 193 KKIELVYNEELNDKNHILYGKHVCFTGALKGFTRNEIAQTVTNIGSVYDSSVKKSTNYLV 252

Query: 690 VG-----DNP-----GSKLEKAQQL-----GVKIMNEEQFLFLL 718
           VG     +        SK++KA++L      ++I++E  FL LL
Sbjct: 253 VGNLENLEKTHNYTKSSKIKKAEKLSSEGQDIEILSEMDFLKLL 296


>gi|169609112|ref|XP_001797975.1| hypothetical protein SNOG_07642 [Phaeosphaeria nodorum SN15]
 gi|160701784|gb|EAT85108.2| hypothetical protein SNOG_07642 [Phaeosphaeria nodorum SN15]
          Length = 1019

 Score = 81.0 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 11/74 (14%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +     VFTG L+K  R +AQE V + G  V+   S+KT+ +           K   LG+
Sbjct: 356 LAGLNFVFTGVLKKWGRTEAQELVKRHGGKVTGAPSKKTNYV-----------KIHDLGI 404

Query: 707 KIMNEEQFLFLLQQ 720
           + + E+    L+++
Sbjct: 405 QTIEEDGLSMLIEK 418


>gi|32477333|ref|NP_870327.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica SH 1]
 gi|32447884|emb|CAD77402.1| probable DNA polymerase III polC-type [Rhodopirellula baltica SH 1]
          Length = 355

 Score = 81.0 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 17/89 (19%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQL-GAVVSAILSRKTDIIIVGD----------NP 694
            +E +K+VFTG LQK+QR +A E +T   G    + +SRKTD+++VGD            
Sbjct: 265 PLEGRKVVFTGVLQKLQREEA-EMLTSRCGGKCQSSVSRKTDLVVVGDPDSRTVQASRTM 323

Query: 695 GSKLEKAQQL---G--VKIMNEEQFLFLL 718
             K   A+QL   G  ++IM E +FL ++
Sbjct: 324 SVKEATARQLAAEGAPLRIMTEHEFLEMI 352


>gi|118397505|ref|XP_001031085.1| BRCT domain containing protein [Tetrahymena thermophila]
 gi|89285407|gb|EAR83422.1| BRCT domain containing protein [Tetrahymena thermophila SB210]
          Length = 1123

 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 20/123 (16%)

Query: 618 NPRNICAVEALLKEVSPSIGR------HEKNVSS------EIENKKLVFTGTLQKIQRHK 665
             +N+  +E   ++   S  +       +KN S+       +  + +VFTG    I R  
Sbjct: 294 EEKNLKKIEENKQKQQVSAKKDKAPPQKDKNSSNGNIDSDILAGQTIVFTGDFDGISRDT 353

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVG--------DNPGSKLEKAQQLGVKIMNEEQFLFL 717
             + VT +GA  +  +S KT +++ G           G K + A+Q G KIMN+ QF   
Sbjct: 354 MSKIVTDMGAKNTGSVSGKTTLLVHGSVLEDGRPPEQGKKYQTAKQKGTKIMNQSQFSDY 413

Query: 718 LQQ 720
           L+ 
Sbjct: 414 LKD 416


>gi|123966480|ref|YP_001011561.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           MIT 9515]
 gi|123200846|gb|ABM72454.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           MIT 9515]
          Length = 251

 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 112/308 (36%), Gaps = 62/308 (20%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           LE+ I ++D  Y +   P+I D ++D L+                        ++  + N
Sbjct: 5   LEERIEWYDHNY-RMGTPLISDVQFDQLEANLY--------------------RVNPKAN 43

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               K    +P  SL K    + + +F+  +          +    +EPKIDG  I I+Y
Sbjct: 44  YFHKKSILPLP--SLPK----DKISEFLEGLL--------PNTRLIIEPKIDGCAIGIQY 89

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
             G+ + A  R     G+DV+  I+ I  +P    + +  +I+VRGE++    +      
Sbjct: 90  IDGQLIKAISR----KGDDVTNKIKEILDVPN--EIKVKGLIQVRGELFAPLENERPTYS 143

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
           +  A G       +N                +L+F    +           ++ L  ++ 
Sbjct: 144 QRKAGGYLRNEASKN---------------DHLSFCGFQIINGRLNE----HDSLVYLKK 184

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS-P 322
           LGF      +       +  Y  +    +    Y  DG+V K++   LQ    +     P
Sbjct: 185 LGF-TIPEYKSLKYLTQVEMYRKQWAEKKLFTQYPTDGIVVKLNSRKLQLIREKSVGCYP 243

Query: 323 RWMISHKF 330
            W ++  F
Sbjct: 244 YWQMAINF 251


>gi|70933831|ref|XP_738232.1| replication factor C subunit 1 [Plasmodium chabaudi chabaudi]
 gi|56514278|emb|CAH82044.1| replication factor C subunit 1, putative [Plasmodium chabaudi
           chabaudi]
          Length = 368

 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 14/79 (17%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSK 697
              NKK V TG  +   R + Q  + + G  V + +S KT  +I G+        + G K
Sbjct: 122 PFINKKFVLTGVFKSFTRDELQSKIKEHGGSVMSAVSSKTHYLIHGEYLEDGRLYSEGKK 181

Query: 698 LEKAQQLG------VKIMN 710
            +KA +L       +KI+N
Sbjct: 182 YQKAYELSKQPKTIIKILN 200


>gi|88596045|ref|ZP_01099282.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88190886|gb|EAQ94858.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|315058737|gb|ADT73066.1| Exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni S3]
 gi|315927070|gb|EFV06421.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 326

 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 14/103 (13%)

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
           K         E ++S  + N+  V TG L +  R +A + +  LG +    +++KT+I+I
Sbjct: 223 KAKDIQAKIQEFDISHPLYNQNCVITGILGRFTRSQAMQIIADLGGINQDSVTKKTNILI 282

Query: 690 VGDN---------PGSKLEKAQQL-----GVKIMNEEQFLFLL 718
           +GDN           +KL++A++L      +KI++E  F  ++
Sbjct: 283 LGDNDYRAMIKGGISNKLKRARELILKGQDLKIISENVFYDMI 325


>gi|315050906|ref|XP_003174827.1| hypothetical protein MGYG_02357 [Arthroderma gypseum CBS 118893]
 gi|311340142|gb|EFQ99344.1| hypothetical protein MGYG_02357 [Arthroderma gypseum CBS 118893]
          Length = 1055

 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 1/96 (1%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           +      +           + +     VFTG L  + R + Q  V + G    +  S KT
Sbjct: 292 QRAQSNGTIDDADLPVGEPNCLAGLSFVFTGVLDSLGREQGQNLVKKFGGKSMSAPSSKT 351

Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +++G++ G  KLE  Q+  +K +NEE    L+++
Sbjct: 352 SYVVLGNDAGPKKLETIQKYKLKTINEEGLFELIRK 387


>gi|225018549|ref|ZP_03707741.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum
           DSM 5476]
 gi|224948681|gb|EEG29890.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum
           DSM 5476]
          Length = 319

 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 14/104 (13%)

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           LK         E + +  + NK  VFTG L+K+ R +A + V   G      L++KT+ +
Sbjct: 210 LKACDILPECDEFDEAHPLFNKVCVFTGALEKMTRSEAMQAVVNFGGTCKDNLTKKTNFL 269

Query: 689 IVGDNP---------GSKLEKAQQLG-----VKIMNEEQFLFLL 718
           I+G+N           +K +KA+        ++I++E  F  ++
Sbjct: 270 ILGNNSYCSTLKDGKSTKQKKAESYKLTGADIEIISENVFYDMI 313


>gi|85001193|ref|XP_955315.1| replication factor c-related protein [Theileria annulata strain
           Ankara]
 gi|65303461|emb|CAI75839.1| replication factor c-related protein, putative [Theileria annulata]
          Length = 961

 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 15/93 (16%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN------- 693
           ++    IE KK VFTG +  I R +A   V +LG +V + +S  T+ ++ G+        
Sbjct: 341 ESSVGGIEGKKFVFTGEMS-IDRLEATFRVKKLGGIVVSAVSGVTNYLVYGEKLEDGRPY 399

Query: 694 -PGSKLEKA------QQLGVKIMNEEQFLFLLQ 719
             G K +KA      + L ++++NE+QFL LLQ
Sbjct: 400 QSGVKYKKALELNSKKNLNIQLLNEQQFLQLLQ 432


>gi|167519801|ref|XP_001744240.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777326|gb|EDQ90943.1| predicted protein [Monosiga brevicollis MX1]
          Length = 613

 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
           K      G+ +   +  +    +VFTGT     R + +      G  V   +S  TD+++
Sbjct: 239 KSAKVQPGQKKATSTKSL---TVVFTGTFTGGTRKEIEAQAVAAGHHVVGKVSGNTDVLV 295

Query: 690 VG--DNP-GSKLEKAQQLGVKIMNEEQFLFLLQ 719
           VG   NP G+K++ AQ  GVK+++E Q+   L 
Sbjct: 296 VGGAKNPQGAKVDDAQAKGVKVLSEPQWAMRLN 328



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNP-GSKLEKAQQLGV 706
           + +VFTGT +   R + +E     G  V   +S K D+++VG   +P G+K   A   G+
Sbjct: 12  QTVVFTGTFEGGNRKEVEEAARANGFRVVGKISDKVDLLVVGGVQDPHGAKWADASSRGI 71

Query: 707 KIMNEEQFLF 716
            I++E+ +  
Sbjct: 72  TILSEDAWRA 81



 Score = 63.3 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNP-GSKLEKAQQLGVK 707
            +VFTGT    +R   +    + G  V++ +S  T +++VG   +P G+K++ A + G  
Sbjct: 147 NVVFTGTFAGGKRQVIENQAREAGYQVASKVSGNTHVLVVGGVKDPQGAKVDDAHRHGAL 206

Query: 708 IMNEEQFLFLL-QQYNTTLRIHDD 730
           ++ E Q+  ++  + N   +   D
Sbjct: 207 VVTEPQWEEMVRNKANDPAKPAKD 230


>gi|330447729|ref|ZP_08311377.1| DNA ligase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491920|dbj|GAA05874.1| DNA ligase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 187

 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
           +  ++ L +E +             + N ++  TGTL  + R + +  +   GA+V   +
Sbjct: 98  LKDIDELQREFATIDEVLNTLS---LTNLRVAVTGTLP-LPRAEFKSLLESKGAIVVGSV 153

Query: 682 SRKTDIIIVGD----NPGSKLEKAQQLGVKIMN 710
           S KT  + +GD       SK+ KA  +GVKI+ 
Sbjct: 154 SNKTSFLFMGDTGKYEITSKMAKAHAVGVKIIT 186


>gi|258565361|ref|XP_002583425.1| hypothetical protein UREG_06392 [Uncinocarpus reesii 1704]
 gi|237907126|gb|EEP81527.1| hypothetical protein UREG_06392 [Uncinocarpus reesii 1704]
          Length = 729

 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L  + R + Q  V + G  V+   S KT  +++G + G  KLE  ++ G
Sbjct: 26  LAELSFVFTGVLDALGREEGQALVKRYGGKVTTAPSSKTSYVVLGGDAGPKKLETIRKHG 85

Query: 706 VKIMNEEQFLFLLQQ 720
           +K ++E     L+++
Sbjct: 86  LKTIDEHGLFELIRK 100


>gi|170758900|ref|YP_001785582.1| DNA polymerase III subunit epsilon [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169405889|gb|ACA54300.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 309

 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 28/119 (23%)

Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
            +  N   +E      + +  + E           +VFTG L  + R +A   V +L   
Sbjct: 205 ASKENKKIIENF----NFTAFKEEV----------VVFTGRLASMTRDEAIILVRKLNGT 250

Query: 677 VSAILSRKTDIIIVG---------DNPGSKLEKAQQL-----GVKIMNEEQFLFLLQQY 721
           V + ++++T  ++           +   +KL+KA  L      +K +NEE FL   ++ 
Sbjct: 251 VGSSVTKRTTYLVTNTNDIEDLNREEMSNKLKKATDLRKKGQNIKFLNEEAFLQKCKEK 309


>gi|118139511|ref|YP_390933.2| NAD-dependent DNA ligase [Thiomicrospira crunogena XCL-2]
 gi|110744162|gb|ABB41259.2| DNA ligase [Thiomicrospira crunogena XCL-2]
          Length = 312

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 14/85 (16%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GS 696
           E + K    TG L    R + Q+ + + G  VS  +++K D ++VG            G 
Sbjct: 226 EFDGKVFCITGALAYGTRKECQDLILKFGGKVSKGITKKLDYLVVGPVASRDWFNTSYGR 285

Query: 697 KLEKA-----QQLGVKIMNEEQFLF 716
           K+EKA     +  G+KI++EE +  
Sbjct: 286 KIEKAVGYRDEGYGLKIISEEVWRK 310


>gi|327537942|gb|EGF24639.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica WH47]
          Length = 355

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 17/89 (19%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQL-GAVVSAILSRKTDIIIVGD----------NP 694
            +E +K+VFTG LQK+QR +A E +T   G    + +SRKTD+++VGD            
Sbjct: 265 PLEGRKVVFTGVLQKLQREEA-EMLTSRCGGKCQSNVSRKTDLVVVGDPDSRTVQASRTM 323

Query: 695 GSKLEKAQQL---G--VKIMNEEQFLFLL 718
             K   A+QL   G  +KIM E +FL ++
Sbjct: 324 SVKEATARQLAAEGAPLKIMTEHEFLEMI 352


>gi|224372066|ref|YP_002606231.1| predicted type III DNA polymerase PolC [Desulfobacterium
           autotrophicum HRM2]
 gi|223694785|gb|ACN18067.1| predicted type III DNA polymerase PolC [Desulfobacterium
           autotrophicum HRM2]
          Length = 290

 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 15/94 (15%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD------- 692
           E N   E+  + +VFTG L  I R  A      +G  V+  +S+K D ++VGD       
Sbjct: 192 EGNPEGELYGQSVVFTGALS-IPRKDAAAMAASIGCSVAPTVSKKIDYLVVGDQDASRLA 250

Query: 693 --NPGSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
             +  SK  KA++L      ++I+ E  F  L+ 
Sbjct: 251 GKDKSSKHIKAEKLIASGVQIRILKESDFKELVD 284


>gi|319654072|ref|ZP_08008164.1| hypothetical protein HMPREF1013_04784 [Bacillus sp. 2_A_57_CT2]
 gi|317394265|gb|EFV75011.1| hypothetical protein HMPREF1013_04784 [Bacillus sp. 2_A_57_CT2]
          Length = 91

 Score = 79.5 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 13/87 (14%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-DNP-------GS 696
             ++ +  VF+G +  + R +A + V   G +    +++ T  ++VG +NP        +
Sbjct: 4   HPLKGEVFVFSGKMHTLLRKEAIKEVLIRGGICEENVTKNTTYLVVGIENPEAIKRNVST 63

Query: 697 KLEKAQQLG-----VKIMNEEQFLFLL 718
           KL KA++       +KI+NEE+FL LL
Sbjct: 64  KLGKAEEYNAAGISIKIINEEEFLNLL 90


>gi|163840229|ref|YP_001624634.1| DNA polymerase III alpha subunit [Renibacterium salmoninarum ATCC
           33209]
 gi|162953705|gb|ABY23220.1| DNA polymerase III alpha subunit [Renibacterium salmoninarum ATCC
           33209]
          Length = 327

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 55/109 (50%), Gaps = 21/109 (19%)

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
           +E +        + +  +  + +VFTG L +I R  A+    +LGA  ++ ++R+T +++
Sbjct: 219 EEGANPAANTAADANHPLFGQTVVFTGNL-QIPRGNAKVKAAELGAQPASSVTRRTTVLV 277

Query: 690 VGDN-----------PGSKLE-KAQ---QL-----GVKIMNEEQFLFLL 718
           VGD             GS+L  KA+   +L      +++++E +F+ ++
Sbjct: 278 VGDGFIAADLRRGETKGSRLTAKAKRVLELHGKGQQIEVLSEGEFMQMI 326


>gi|163735140|ref|ZP_02142576.1| Exonuclease [Roseobacter litoralis Och 149]
 gi|161391598|gb|EDQ15931.1| Exonuclease [Roseobacter litoralis Och 149]
          Length = 287

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 15/92 (16%)

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-----PG- 695
           N    +  + +VFTG L+ I R +A +    +G  V A +++KT +++VGD       G 
Sbjct: 193 NPDGALAGEVVVFTGALE-IPRREAADLAASIGCSVGASVTKKTTLLVVGDTDVARLAGH 251

Query: 696 ---SKLEKAQQL---GVK--IMNEEQFLFLLQ 719
              SK  KA+ L   GV   I+ E  F  L++
Sbjct: 252 AKSSKHRKAEDLAAKGVPIRIIRETDFRELVE 283


>gi|123968278|ref|YP_001009136.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           AS9601]
 gi|123198388|gb|ABM70029.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           AS9601]
          Length = 249

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 97/308 (31%), Gaps = 64/308 (20%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           LE+ I ++DD Y   +  +I D ++D L++                              
Sbjct: 5   LEERIEWYDDNYRNGNA-LISDKQFDQLEKNLLRTNPNCDYFK----------------- 46

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               K+       SLEK    + + +F+  +               +EPKIDG  + ++Y
Sbjct: 47  -KKNKIVLP----SLEK----DSIDEFLKGLL--------VDTRLLIEPKIDGCAVALQY 89

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
             G    A  R     G DV++ +  +  IP  L L    +++VRGE+Y           
Sbjct: 90  RDGTLEKAISR----KGADVTSKLIKVQDIPNNLPL--RGVLQVRGELYAPNQSPNISQK 143

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
                 R       + +    + LN T         +  LG T                 
Sbjct: 144 IASGFLRAKEGFSESLSFCAFQILNSTLNQYESKKSLSKLGFTIPQDIS----------- 192

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA-RSP 322
                       N    +  +  +    +    Y  DG+V K++   LQ    +     P
Sbjct: 193 -----------CNFTSQVEVFRKQWLEGKLFSKYPTDGIVVKINSRKLQLIREKSNLDYP 241

Query: 323 RWMISHKF 330
            W ++ K 
Sbjct: 242 YWQVAIKR 249


>gi|333030386|ref|ZP_08458447.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
 gi|332740983|gb|EGJ71465.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
          Length = 279

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 53/96 (55%), Gaps = 7/96 (7%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
                  + N  +   N+K+V TGT Q+  R +  E + QLGA ++  +S +T+ ++ G+
Sbjct: 184 VLKQDLSQANPQNPFYNQKVVITGTFQR-DRMELAEQIQQLGAKINTSISSRTNFVLKGE 242

Query: 693 NPG-SKLEKAQQL---GVKI--MNEEQFLFLLQQYN 722
             G +KL++  +L   GV I  + EE+ + +L+++ 
Sbjct: 243 KAGPAKLKRIHELQSQGVPIQVVEEEKLMKVLEKWG 278


>gi|91081967|ref|XP_967820.1| PREDICTED: similar to replication factor C large subunit, putative
           [Tribolium castaneum]
 gi|270007366|gb|EFA03814.1| hypothetical protein TcasGA2_TC013927 [Tribolium castaneum]
          Length = 985

 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQ 713
           TG L  +   +    + Q G  V   +S+K + ++VG  PG +KL KA+   +  ++E++
Sbjct: 260 TGVLDSLDSEEFANIIKQHGGRVVHAVSKKVNYVVVGAEPGPAKLAKAESYNIPNISEDE 319

Query: 714 FLFLL 718
            L ++
Sbjct: 320 LLDMI 324


>gi|153213490|ref|ZP_01948801.1| DNA ligase [Vibrio cholerae 1587]
 gi|124115954|gb|EAY34774.1| DNA ligase [Vibrio cholerae 1587]
          Length = 124

 Score = 78.7 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 608 IAQAIVEFYQNPRNICAVEA--LLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRH 664
           +AQ I +F+         +    L+++        + + + +++N K+  TGTL  + R 
Sbjct: 15  VAQRIEDFHSGKNKQKEAQRNIKLEDIEREFASISEVLDTIKLDNLKVAITGTLP-LPRA 73

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-----KLEKAQQLGVKIMN 710
            A+  +   GA+V   ++++T  + +G N G      K++KA  LGVKI+ 
Sbjct: 74  DARALLESKGAIVVGSVNKQTSFLFMG-NTGRYEITEKMKKAHSLGVKIIT 123


>gi|168182135|ref|ZP_02616799.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Bf]
 gi|237793573|ref|YP_002861125.1| DNA polymerase III subunit epsilon [Clostridium botulinum Ba4 str.
           657]
 gi|182674639|gb|EDT86600.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Bf]
 gi|229262587|gb|ACQ53620.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Ba4 str. 657]
          Length = 309

 Score = 78.7 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 14/84 (16%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702
           +VFTG L  + R++A   V +L   V + +++KT  ++           +   +KL+KA 
Sbjct: 226 VVFTGGLASMTRNEAMILVGKLNGTVGSSVTKKTTCLVTNTKDIEDLNREEMSNKLKKAI 285

Query: 703 QL-----GVKIMNEEQFLFLLQQY 721
            L      +K++NEE FL   ++ 
Sbjct: 286 DLKKKGQNIKVLNEEAFLQKCKEK 309


>gi|331082129|ref|ZP_08331257.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405724|gb|EGG85254.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 405

 Score = 78.7 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 15/92 (16%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSK 697
           I   + V TG    + + +  +Y+   G  V++ +S  T+ +IVG  P         GSK
Sbjct: 314 ITGMRFVLTGIFTLMPKDEIVDYIETNGGKVTSAVSGVTNYLIVGSEPEPAWKHGNYGSK 373

Query: 698 LEKAQQL------GVKIMNEEQFLFLLQQYNT 723
           +EKA  L       +  + EE F+      N+
Sbjct: 374 IEKALSLISENNKHILFIKEEDFISFFASENS 405


>gi|254431865|ref|ZP_05045568.1| DNA ligase [Cyanobium sp. PCC 7001]
 gi|197626318|gb|EDY38877.1| DNA ligase [Cyanobium sp. PCC 7001]
          Length = 41

 Score = 78.7 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           S+KT  ++ G+  GSKL KA+ LGV +++E   L LL 
Sbjct: 2   SKKTSYVVAGEEAGSKLTKAESLGVAVLDEAGLLALLD 39


>gi|320179985|gb|EFW54927.1| DNA ligase , LigB [Shigella boydii ATCC 9905]
          Length = 140

 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 23/156 (14%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F               +          V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCF---------GNETRDVMMPPLNG--AVMHPVAHTGVRKMA 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMREHSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
            +  +R I  +P+ +S        ++GE+++ +   
Sbjct: 99  WTQKVRLISAVPQTVSGP-LANSTLQGEIFLKREGH 133


>gi|172040860|ref|YP_001800574.1| hypothetical protein cur_1180 [Corynebacterium urealyticum DSM
           7109]
 gi|171852164|emb|CAQ05140.1| hypothetical protein cu1180 [Corynebacterium urealyticum DSM 7109]
          Length = 258

 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 7/92 (7%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                 E +V   +  + +V TG ++   + +    +   GA+V+  +++KT ++IVG+ 
Sbjct: 163 VPEQNTEADVDGPVFGETVVITGDVEPYSKGEVWNMLADAGAIVAKNVTKKTTLLIVGEW 222

Query: 694 P--GSKLEKAQQLG-----VKIMNEEQFLFLL 718
               SK ++A++L      + I   E+ L  L
Sbjct: 223 ATVTSKEKRARELQEQGQELAIWTFEELLQKL 254


>gi|325289205|ref|YP_004265386.1| DNA polymerase III, epsilon subunit [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964606|gb|ADY55385.1| DNA polymerase III, epsilon subunit [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 410

 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 616 YQNPRNICAVEAL-LKEVSPSIGRHEKNVSSE------IENKKLVFTGTLQKI------Q 662
            Q+ RN+  +  +  +E++  I   + N S+        + K + FTGTLQ +       
Sbjct: 288 LQDLRNVACILDIDQEELNQMIITGKTNTSTREFYKKDCKGKSVCFTGTLQTMKEGRPLT 347

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           R +A     + G ++ + +++  D ++    D+   K +KA+Q  V IM E+ F  +L
Sbjct: 348 REEAHALALEYGLIIKSGVTKDLDFLVAADSDSMSGKAKKARQYNVNIMAEQAFWNML 405


>gi|326427870|gb|EGD73440.1| DNA ligase [Salpingoeca sp. ATCC 50818]
          Length = 664

 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---DNP 694
           +     +S I + K+VFTGT +   R   +   ++LGA+V + +S KTD++++G      
Sbjct: 154 KTSAATASSIRDLKVVFTGTFESGIRRVVENEASKLGAIVGSSVSSKTDLLVIGGLVRPF 213

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLL 718
           G+K ++A  LGV+++ E+++  ++
Sbjct: 214 GAKEDRASDLGVRVIFEKEWNDMV 237


>gi|302657732|ref|XP_003020581.1| hypothetical protein TRV_05323 [Trichophyton verrucosum HKI 0517]
 gi|291184429|gb|EFE39963.1| hypothetical protein TRV_05323 [Trichophyton verrucosum HKI 0517]
          Length = 1069

 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 10/150 (6%)

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLV---GDIIAQAIVEFYQNPRNICAVEALLKE 631
            S     +        + +    L  +P V       A     F      + A +     
Sbjct: 257 KSTPKKPRATKADQPESKEIQDILNSIPEVKAPSPPTATKKFNF------VAAAQRAQSG 310

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
            +           + +     VFTG L  + R + Q  V + G    +  S KT  +++G
Sbjct: 311 GTIDDSDLPVGEPNCLAGLSFVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLG 370

Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ G  KLE  Q+  +K +NE     L+++
Sbjct: 371 NDAGPKKLETIQKYKLKTINEGGLFELIRK 400


>gi|296812349|ref|XP_002846512.1| replication factor C subunit 1 [Arthroderma otae CBS 113480]
 gi|238841768|gb|EEQ31430.1| replication factor C subunit 1 [Arthroderma otae CBS 113480]
          Length = 1056

 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +     VFTG L  + R + Q  V + G       S KT  +++G++ G  KLE  ++  
Sbjct: 316 LAGLSFVFTGVLDSLGREQGQNLVKKYGGKSMTAPSSKTSYVVLGNDAGPKKLETIKKYK 375

Query: 706 VKIMNEEQFLFLLQQ 720
           +K +NEE    L+++
Sbjct: 376 LKTINEEGLFELIRK 390


>gi|257791384|ref|YP_003181990.1| Exonuclease RNase T and DNA polymerase III [Eggerthella lenta DSM
           2243]
 gi|257475281|gb|ACV55601.1| Exonuclease RNase T and DNA polymerase III [Eggerthella lenta DSM
           2243]
          Length = 367

 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 19/133 (14%)

Query: 596 LSLIRVPLVGDIIA---QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652
             L   P +  I+A    AI + + +      +  L+  +       E +V     N+K 
Sbjct: 230 EELTSDPALSPIVALLQNAIADGWVDEAESNELANLISHIVNPSSSIEDSVD--FANRKF 287

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII---VGDNP------GSKLEKA-- 701
           V TG+     +     ++ + G  V   +++  D ++    G         G K++KA  
Sbjct: 288 VLTGSFNHGTKDDVSAFIQERGGEVLQNVTKTCDYVVIGGCGSEAYSLGSYGGKVKKALD 347

Query: 702 -QQLGVK--IMNE 711
            Q  GV   ++ E
Sbjct: 348 WQAKGVPMQVIEE 360


>gi|308160758|gb|EFO63231.1| Replication factor C, subunit 1 [Giardia lamblia P15]
          Length = 887

 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQ 703
           S +     V TG L+ +     + YVT LG  V+  +S +T  ++VGD+PG +K+  A+ 
Sbjct: 175 SSLSKLIFVRTGNLRTMSDTDFKLYVTNLGGTVTTAVSGRTSYLVVGDDPGATKIRDAKA 234

Query: 704 LGVKIMNEEQFLFLL 718
             V+I++E++F  L+
Sbjct: 235 KFVRIISEKEFYNLV 249


>gi|218245952|ref|YP_002371323.1| BRCT domain-containing protein [Cyanothece sp. PCC 8801]
 gi|218166430|gb|ACK65167.1| BRCT domain protein [Cyanothece sp. PCC 8801]
          Length = 600

 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 24/110 (21%)

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL------------GAV 676
           + EV+P   +      + +  KK+V  G+L ++ R +A+ Y+ +                
Sbjct: 503 IAEVTPEESQESSAKENPLSGKKVVIAGSLSQMTREEARGYLQKAGGSLTSSLSSKT--- 559

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
                      I++G+ PG K++KA +LGV  + E QF+ LL+  N ++ 
Sbjct: 560 ---------HYIVIGNAPGDKVKKAHKLGVTQLTETQFMDLLKSANISIS 600


>gi|326469755|gb|EGD93764.1| replication factor C protein [Trichophyton tonsurans CBS 112818]
 gi|326485097|gb|EGE09107.1| replication factor C subunit 1 [Trichophyton equinum CBS 127.97]
          Length = 1060

 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 10/150 (6%)

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLV---GDIIAQAIVEFYQNPRNICAVEALLKE 631
            S     +        + +    L  +P V       A     F      + A +     
Sbjct: 249 KSTPKKPRATKADQPESKEIQDILNSIPEVKAPSPPTATKKFNF------VAAAQRAQSS 302

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
            +           + +     VFTG L  + R + Q  V + G    +  S KT  +++G
Sbjct: 303 GTIDDSDLPVGEPNCLAGLSFVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLG 362

Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ G  KLE  Q+  +K +NE     L+++
Sbjct: 363 NDAGPKKLETIQKYKLKTINEGGLFELIRK 392


>gi|302509032|ref|XP_003016476.1| hypothetical protein ARB_04765 [Arthroderma benhamiae CBS 112371]
 gi|291180046|gb|EFE35831.1| hypothetical protein ARB_04765 [Arthroderma benhamiae CBS 112371]
          Length = 1073

 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 10/150 (6%)

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLV---GDIIAQAIVEFYQNPRNICAVEALLKE 631
            S     +        + +    L  +P V       A     F      + A +     
Sbjct: 258 KSTPKKPRATKADQPESKEIQDILNSIPEVKAPSPPTATKKFNF------VAAAQRAQSS 311

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
            +           + +     VFTG L  + R + Q  V + G    +  S KT  +++G
Sbjct: 312 GTIDDSDLPVGEPNCLAGLSFVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLG 371

Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ G  KLE  Q+  +K +NE     L+++
Sbjct: 372 NDAGPKKLETIQKYKLKTINEGGLFELIRK 401


>gi|255074155|ref|XP_002500752.1| predicted protein [Micromonas sp. RCC299]
 gi|226516015|gb|ACO62010.1| predicted protein [Micromonas sp. RCC299]
          Length = 669

 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 10/83 (12%)

Query: 647 IENKKLVFTGTLQKIQ--------RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SK 697
           +  K +V TG   ++         + +A+  +   G  V+  +S +TD+++VG  PG SK
Sbjct: 519 LAGKTVVLTGVFPQLGGGQGLDLGKARARAMIESFGGRVTGSVSGRTDVLLVGKEPGMSK 578

Query: 698 LEKAQ-QLGVKIMNEEQFLFLLQ 719
           + KA+ Q G  +++ E    LL 
Sbjct: 579 VTKARNQPGCMVLSLENLCELLN 601


>gi|257059000|ref|YP_003136888.1| BRCT domain protein [Cyanothece sp. PCC 8802]
 gi|256589166|gb|ACV00053.1| BRCT domain protein [Cyanothece sp. PCC 8802]
          Length = 569

 Score = 77.5 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 24/110 (21%)

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL------------GAV 676
           + EV+P   +      + +  KK+V  G+L ++ R +A+ Y+ +                
Sbjct: 472 IAEVTPEESQESSAKENPLSGKKVVIAGSLSQMTREEARGYLQKAGGSLTSSLSSKT--- 528

Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
                      I++G+ PG K++KA +LGV  + E QF+ LL+  N ++ 
Sbjct: 529 ---------HYIVIGNAPGDKVKKAHKLGVTQLTETQFMDLLKSANISIS 569


>gi|326795140|ref|YP_004312960.1| hypothetical protein Marme_1869 [Marinomonas mediterranea MMB-1]
 gi|326545904|gb|ADZ91124.1| hypothetical protein Marme_1869 [Marinomonas mediterranea MMB-1]
          Length = 286

 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 14/82 (17%)

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSKLEKA 701
            +V +G      R   ++     G  +   +S+KTD ++ G            G K+EKA
Sbjct: 205 SIVVSGEFDMGSRDDVKDIAIGRGYRLLGSVSKKTDYLVFGSKVSPNWGANNFGGKIEKA 264

Query: 702 QQLG-----VKIMNEEQFLFLL 718
            +L      +KI++E Q++  L
Sbjct: 265 VKLKLEGYPIKIISESQWISFL 286


>gi|168703129|ref|ZP_02735406.1| hypothetical protein GobsU_26601 [Gemmata obscuriglobus UQM 2246]
          Length = 1098

 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 641 KNVSSEIE-NK-KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---- 694
                 ++  K    FTGTL  I    A+  V      V+A +S K   ++VGD+     
Sbjct: 641 AAAGGPVDLGKASFCFTGTLANITAKDAEARVKGANGTVAANVSPKLHYLVVGDSGSPFL 700

Query: 695 -----GSKLEKAQQL-----GVKIMNEEQFLFLL 718
                G+K  KA++L      + I++E  FL +L
Sbjct: 701 GQGQKGAKYIKAEELNANGANISIISETMFLQML 734


>gi|254510966|ref|ZP_05123033.1| exonuclease [Rhodobacteraceae bacterium KLH11]
 gi|221534677|gb|EEE37665.1| exonuclease [Rhodobacteraceae bacterium KLH11]
          Length = 334

 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 15/97 (15%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD------- 692
           E N +  +      FTG L  + R +A       G  V   +S+K  ++IVGD       
Sbjct: 233 EGNQNGPLYGHVACFTGKLS-MSRSEASTVAAGAGLSVKTSVSKKITLLIVGDQDLELLN 291

Query: 693 --NPGSKLEKAQQL-----GVKIMNEEQFLFLLQQYN 722
                SK  +A++L      +KI+ E  F  L+++ N
Sbjct: 292 GQEKSSKHRRAEELIEQGQDIKIIGESDFRSLVEKSN 328


>gi|171676372|ref|XP_001903139.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936252|emb|CAP60911.1| unnamed protein product [Podospora anserina S mat+]
          Length = 676

 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 7/90 (7%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----NPGSKLEKA 701
            ++  K+  +GT   + +   +     +GA VS  ++  T  ++  +     P +K+ KA
Sbjct: 17  PLDGCKIALSGTFAGMTQSAVKAKAEAVGATVSTAVTEDTTHLVATEADFNKPSAKVTKA 76

Query: 702 QQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
           Q LG+ I++  ++L L +Q N+  +  +DD
Sbjct: 77  QTLGIPIVSF-EWLSLSEQKNS--KQAEDD 103


>gi|153933783|ref|YP_001382659.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935123|ref|YP_001386211.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str.
           Hall]
 gi|152929827|gb|ABS35327.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. ATCC 19397]
 gi|152931037|gb|ABS36536.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. Hall]
          Length = 309

 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 14/84 (16%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702
           +VFTG L  + R++A   V +L   V + +++KT  ++           +   +KL+KA 
Sbjct: 226 VVFTGGLASMTRNEAMILVGKLNGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAI 285

Query: 703 QL-----GVKIMNEEQFLFLLQQY 721
            L      +K +NEE FL   ++ 
Sbjct: 286 DLKKKGQNIKFLNEEAFLQKCKEK 309


>gi|11999114|gb|AAG43050.1|AF139827_1 replication factor C subunit 1 [Plasmodium falciparum]
          Length = 904

 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 25/105 (23%)

Query: 629 LKEVSPSIGRHEKNVSS-----------EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
            K V  S  + +K  ++              N+K V TG  +   R + Q  + + G  V
Sbjct: 184 KKNVLISPAKKQKTQNNNNEDLQKFDYLPFHNQKFVITGVFKNFTRDELQSKIKEHGGSV 243

Query: 678 SAILSRKTDIIIVGD--------NPGSKLEKAQQL------GVKI 708
              +S KT+ ++ G+        N G K  KA +L       +KI
Sbjct: 244 MTAVSTKTNYLVHGEYLEDGRLFNEGRKYTKAFELQQQNKSNIKI 288


>gi|330872403|gb|EGH06552.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 379

 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 61/392 (15%), Positives = 112/392 (28%), Gaps = 57/392 (14%)

Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301
            +G     +  G  +M Q++  L           +      +     +      P     
Sbjct: 39  AIGLFVWDWPNGPGDMAQRLAGLQAMGFEDSAAYSHPLENYAKAARWREHWYRNPLPFAT 98

Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361
               + +         +A +P W+ + K    QA   +  +   +GR+G +TPV  L PV
Sbjct: 99  DGVIMRQGQRPPMQRWQASAPYWIAAWKHPYAQALAEVRKVSFNVGRSGRITPVLELTPV 158

Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
            +    ++  +                     DIR GD+V V  AG  IP++  +I    
Sbjct: 159 RLDDRTVSRIS-----------TGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRAA 207

Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDA 480
                                               C      C +Q   RL     +  
Sbjct: 208 ERVEMII-------------------PQADDFHELSCWQATPGCESQFRARLIWLSGKKG 248

Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540
             + G+G    D   ++            I +L      +  ++ NI GF + S   L  
Sbjct: 249 LALPGVGPGTWDKLIENG----------QIESLLDWMTLNHAELANIPGFAERSSAKLLA 298

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           S+   R    + ++ ++G+   G+                    +N              
Sbjct: 299 SLQTARERPFQTWLKAIGLPPTGSAT----------------LPDNWQELAGRSVEQWQA 342

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
            P +G   A  +  F+Q P        L  + 
Sbjct: 343 EPGIGPGRAAKLRSFFQAPEVQALSHQLQAQG 374


>gi|148378258|ref|YP_001252799.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. ATCC 3502]
 gi|148287742|emb|CAL81808.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502]
          Length = 309

 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 14/84 (16%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702
           +VFTG L  + R++A   V +L   V + +++KT  ++           +   +KL+KA 
Sbjct: 226 VVFTGGLASMTRNEAMILVGKLNGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAI 285

Query: 703 QL-----GVKIMNEEQFLFLLQQY 721
            L      +K +NEE FL   ++ 
Sbjct: 286 DLKKKGQNIKFLNEEAFLQKCKEK 309


>gi|124801451|ref|XP_001349697.1| replication factor C subunit 1, putative [Plasmodium falciparum
           3D7]
 gi|3845304|gb|AAC71968.1| replication factor C subunit 1, putative [Plasmodium falciparum
           3D7]
          Length = 904

 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 25/105 (23%)

Query: 629 LKEVSPSIGRHEKNVSS-----------EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
            K V  S  + +K  ++              N+K V TG  +   R + Q  + + G  V
Sbjct: 184 KKNVLISPAKKQKTQNNNNEDLQKFDYLPFHNQKFVITGVFKNFTRDELQSKIKEHGGSV 243

Query: 678 SAILSRKTDIIIVGD--------NPGSKLEKAQQL------GVKI 708
              +S KT+ ++ G+        N G K  KA +L       +KI
Sbjct: 244 MTAVSTKTNYLVHGEYLEDGRLFNEGRKYTKAFELQQQNKSNIKI 288


>gi|304311282|ref|YP_003810880.1| exonuclease domain in DNA-polymerase alpha and epsilon chain [gamma
           proteobacterium HdN1]
 gi|301797015|emb|CBL45228.1| exonuclease domain in DNA-polymerase alpha and epsilon chain [gamma
           proteobacterium HdN1]
          Length = 297

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 15/94 (15%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699
           E N   E+  + LVFTG L+ + R +A      +G  V   +++KT I++VGD   SKL 
Sbjct: 199 EGNPQGELTGEILVFTGQLE-MSRQEAANIAASVGCEVVPSVTKKTTILVVGDQDISKLA 257

Query: 700 ---------KAQQ-----LGVKIMNEEQFLFLLQ 719
                    KA++     L ++I+ E  F+ L++
Sbjct: 258 GHEKSAKHRKAEELISMGLSIRILGESDFMELVK 291


>gi|226947476|ref|YP_002802567.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A2 str. Kyoto]
 gi|226841365|gb|ACO84031.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A2 str. Kyoto]
          Length = 309

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 14/84 (16%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702
           +VFTG L  + R++A   V +L   V + +++KT  ++           +   +KL+KA 
Sbjct: 226 VVFTGGLASMTRNEAMILVGKLNGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAI 285

Query: 703 QL-----GVKIMNEEQFLFLLQQY 721
            L      +K +NEE FL   ++ 
Sbjct: 286 DLKKKGQNIKFLNEEAFLQKCKEK 309


>gi|153938164|ref|YP_001389626.1| DNA polymerase III subunit epsilon [Clostridium botulinum F str.
           Langeland]
 gi|152934060|gb|ABS39558.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum F str. Langeland]
 gi|295317718|gb|ADF98095.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum F str. 230613]
          Length = 309

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 14/84 (16%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702
           +VFTG L  + R++A   V +L   V + +++KT  ++           +   +KL+KA 
Sbjct: 226 VVFTGGLASMTRNEAMILVGKLNGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAI 285

Query: 703 QL-----GVKIMNEEQFLFLLQQY 721
            L      +K +NEE FL   ++ 
Sbjct: 286 DLKKKGQNIKFLNEEAFLQKCKEK 309


>gi|66808577|ref|XP_638011.1| replication factor C subunit [Dictyostelium discoideum AX4]
 gi|74853625|sp|Q54MH9|RFC1_DICDI RecName: Full=Probable replication factor C subunit 1; AltName:
           Full=Activator 1 subunit 1
 gi|60466460|gb|EAL64515.1| replication factor C subunit [Dictyostelium discoideum AX4]
          Length = 1401

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705
           +  K  + +G +   +R +  + + + G  V+    +  + ++ G + G  KLE A+++G
Sbjct: 642 LRGKVFLVSGVMDCFERDEMHDIIKRWGGKVAKSAVKLLNYLVSGKDVGEKKLEGAKKVG 701

Query: 706 VKIMNEEQFLFLLQQ 720
            KI+ E++FL ++ +
Sbjct: 702 AKIITEDEFLEMINK 716


>gi|309784373|ref|ZP_07679012.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           dysenteriae 1617]
 gi|308927880|gb|EFP73348.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           dysenteriae 1617]
          Length = 153

 Score = 76.8 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 23/156 (14%)

Query: 43  ILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102
           + D  YD L  R       F               +          V H +    + K+ 
Sbjct: 1   MEDGVYDQLSARLTQWQRCF---------GSEPRDVMMPPLNG--AVMHPVAHTGVRKMV 49

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           +   L  ++      W           ++PK+DG  +T+ Y  GK   A  RG+G  GED
Sbjct: 50  DKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGED 98

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
            +  +  I  +P+ +S        ++GE+++ +   
Sbjct: 99  WTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREGH 133


>gi|78779078|ref|YP_397190.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9312]
 gi|78712577|gb|ABB49754.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9312]
          Length = 249

 Score = 76.8 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 59/306 (19%), Positives = 107/306 (34%), Gaps = 64/306 (20%)

Query: 25  EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84
           E+ I ++DD Y   +  +I D ++D L++             +      P          
Sbjct: 6   EERIEWYDDNYRNGNA-LISDKQFDQLEKNLLRTNPNCDYFKKRSKLVLP---------- 54

Query: 85  SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144
                       SLEK    + + +F+  +               +EPKIDG  + ++Y 
Sbjct: 55  ------------SLEK----DSIDRFLEGLL--------ADTRLLIEPKIDGCAVALQYR 90

Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204
            G    A  R     G DV+  +  +  IP  L L    +++VRGE+Y S          
Sbjct: 91  DGILEKAISR----KGTDVTTKLIKVQDIPNHLPL--RGVLQVRGELYASN--------- 135

Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264
                + P  + R A+  +  +    +   +  F +             QYE  + +  L
Sbjct: 136 -----QTPNISQRMASGYLRAKEGFPERLSFCAFQILN-------STLNQYESKKSLSEL 183

Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA-RSPR 323
           GF +   +   N    +  +  +    +    Y  DG+V K++   LQ    +     P 
Sbjct: 184 GFTIPQDI-SCNFTSQVQVFRKQWIEGKLFREYPTDGIVVKINSRKLQLIREKSNLDYPY 242

Query: 324 WMISHK 329
           W ++ K
Sbjct: 243 WQVAIK 248


>gi|182418640|ref|ZP_02949917.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521]
 gi|237668503|ref|ZP_04528487.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377502|gb|EDT75056.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521]
 gi|237656851|gb|EEP54407.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 308

 Score = 76.4 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 14/84 (16%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSK 697
            +   +VFTG L  + R +A   V +LG    + +++KT I++           +   +K
Sbjct: 221 FKGDTVVFTGRLSSMTRDEAIRLVRRLGGASGSSVTKKTTILVSNIKDIHELKRNEMSTK 280

Query: 698 LEKAQQL-----GVKIMNEEQFLF 716
           + KA  L      +  ++E +F+ 
Sbjct: 281 MRKAVDLKLMGQKIDFIDENEFIK 304


>gi|299541821|ref|ZP_07052144.1| DNA polymerase III [Lysinibacillus fusiformis ZC1]
 gi|298725559|gb|EFI66200.1| DNA polymerase III [Lysinibacillus fusiformis ZC1]
          Length = 110

 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 13/105 (12%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
                  +N++    NK++VFTG L  + R +A + V   G  +   +++ TD +++G+ 
Sbjct: 10  IFFSDPIENLTHPFYNKQIVFTGALSTMTRSEAAKQVKAYGGYLQGAVTQHTDFVVLGNK 69

Query: 694 ---PGSKLEKAQQL-----GVKIMNEEQFLFLLQQYNTTLRIHDD 730
                +K  KA+QL      ++++ E+ FL+L+     ++   DD
Sbjct: 70  RRGISAKQHKAEQLIRQGQDIQMLIEDDFLWLI-----SIPKKDD 109


>gi|302873810|ref|YP_003842443.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
 gi|307689948|ref|ZP_07632394.1| DNA polymerase III subunit epsilon [Clostridium cellulovorans 743B]
 gi|302576667|gb|ADL50679.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
          Length = 306

 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 14/85 (16%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSK 697
            +++ +VFTG L  + R +A   V +LG    + +++KT I++           +   +K
Sbjct: 221 FKDEVVVFTGRLCSMARDEAMRLVRRLGGTAGSSVTKKTTILVTNTKDPKELRKEEMSTK 280

Query: 698 LEKAQQL-----GVKIMNEEQFLFL 717
           L KA  L      ++ +NEE FL +
Sbjct: 281 LRKATDLSEKGQNIRFLNEEDFLNI 305


>gi|159111709|ref|XP_001706085.1| Replication factor C, subunit 1 [Giardia lamblia ATCC 50803]
 gi|157434178|gb|EDO78411.1| Replication factor C, subunit 1 [Giardia lamblia ATCC 50803]
          Length = 890

 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQ 703
           + +     V TG L+ +     + YV  LG  V+  +S +T  ++VGD+PG +K+  A+ 
Sbjct: 175 NSLSKLIFVRTGNLRTMSDTDFKLYVANLGGTVTTAVSGRTSYLVVGDDPGVTKIRDAKA 234

Query: 704 LGVKIMNEEQFLFLL 718
             V+I++E++F  L+
Sbjct: 235 KFVRIISEKEFYDLV 249


>gi|327303742|ref|XP_003236563.1| chromosome transmission fidelity factor [Trichophyton rubrum CBS
           118892]
 gi|326461905|gb|EGD87358.1| chromosome transmission fidelity factor [Trichophyton rubrum CBS
           118892]
          Length = 1058

 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 10/150 (6%)

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLV---GDIIAQAIVEFYQNPRNICAVEALLKE 631
            S     +        + +    L  +P V       A     F      + A +     
Sbjct: 247 KSTPKKPRATKADQQESKEIQAILNSIPEVKAPSPPTATKKFNF------VAAAQRAQSS 300

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
            +           + +     VFTG L  + R + Q  V + G    +  S KT  +++G
Sbjct: 301 GTIDDSDLPVGEPNCLAGLSFVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLG 360

Query: 692 DNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720
           ++ G  KLE  Q+  ++ +NE     L+++
Sbjct: 361 NDAGPKKLETIQKYKLRTINEGGLFELIRK 390


>gi|213621265|ref|ZP_03374048.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-2068]
          Length = 50

 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63
          +E   ++L+ L   + +H+  Y+    P ILD+EYD L R    +    P
Sbjct: 1  MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRP 50


>gi|90019261|gb|ABD84282.1| NAD-dependent DNA ligase-like [Yersinia sp. MH-1]
          Length = 167

 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 22/162 (13%)

Query: 41  PIILDSEYDALKRRCDAIAH--AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSL 98
            +I D  YD L+ R +      A P+  R  +   P             +++H +    L
Sbjct: 5   SLIEDDIYDQLRYRLNHWVRCIAIPE-KRVNNALSPT-------ISLQNRLSHPVAHTGL 56

Query: 99  EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGH 158
           +K+     L +++      W           ++PK+DG  +T+ Y +G    A  RGDG 
Sbjct: 57  KKLHGKGALSEWLAERKNLW-----------VQPKVDGVAVTLTYVQGNLTQAISRGDGA 105

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200
            G++ +  ++ IP IP  +S   P ++ + GE+++       
Sbjct: 106 VGQNWTDKVKYIPAIPHFISQAPP-LLVLHGELFLKVTHHKQ 146


>gi|301093002|ref|XP_002997350.1| replication factor C subunit, putative [Phytophthora infestans
           T30-4]
 gi|262110748|gb|EEY68800.1| replication factor C subunit, putative [Phytophthora infestans
           T30-4]
          Length = 893

 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD------NP--GSKL 698
           ++ K   F+G L+ + R  A   V   G  ++  ++R T  +++G       N   GSK 
Sbjct: 212 LDGKTFAFSGVLESLSREDAVHLVKSCGGSIAISITRSTKYLVIGSTLEQGGNVTDGSKY 271

Query: 699 EKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
           ++A    V+I+ + +F  L+ +  T  +  D
Sbjct: 272 KEAVAKNVRILTQNEFYNLITEAATAQQTQD 302


>gi|330883891|gb|EGH18040.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 105

 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 13/114 (11%)

Query: 90  THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149
            H +    + K+ +   ++ ++      W           ++PK+DG  +T+ YE G+ V
Sbjct: 2   PHPVAHTGVNKLADESSVKDWLEGRNDLW-----------IQPKVDGVAVTLVYENGQLV 50

Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
            A  RGDG  G+D ++  R I TIP    L  PE   ++GE+Y   +D +    
Sbjct: 51  QAISRGDGRKGQDWTSQARLIKTIP--QHLPQPESAILQGELYWRLDDHIQSAS 102


>gi|257880530|ref|ZP_05660183.1| predicted protein [Enterococcus faecium 1,230,933]
 gi|257883538|ref|ZP_05663191.1| predicted protein [Enterococcus faecium 1,231,502]
 gi|294623257|ref|ZP_06702124.1| DNA polymerase III, epsilon subunit [Enterococcus faecium U0317]
 gi|314940265|ref|ZP_07847437.1| conserved domain protein [Enterococcus faecium TX0133a04]
 gi|314943571|ref|ZP_07850331.1| conserved domain protein [Enterococcus faecium TX0133C]
 gi|314950783|ref|ZP_07853856.1| conserved domain protein [Enterococcus faecium TX0133A]
 gi|314992904|ref|ZP_07858303.1| conserved domain protein [Enterococcus faecium TX0133B]
 gi|314996095|ref|ZP_07861170.1| conserved domain protein [Enterococcus faecium TX0133a01]
 gi|257814758|gb|EEV43516.1| predicted protein [Enterococcus faecium 1,230,933]
 gi|257819196|gb|EEV46524.1| predicted protein [Enterococcus faecium 1,231,502]
 gi|291597328|gb|EFF28512.1| DNA polymerase III, epsilon subunit [Enterococcus faecium U0317]
 gi|313589722|gb|EFR68567.1| conserved domain protein [Enterococcus faecium TX0133a01]
 gi|313592581|gb|EFR71426.1| conserved domain protein [Enterococcus faecium TX0133B]
 gi|313597029|gb|EFR75874.1| conserved domain protein [Enterococcus faecium TX0133A]
 gi|313597738|gb|EFR76583.1| conserved domain protein [Enterococcus faecium TX0133C]
 gi|313640509|gb|EFS05089.1| conserved domain protein [Enterococcus faecium TX0133a04]
          Length = 99

 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 14/89 (15%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-------DNP--GSK 697
           + N+++VFTGTLQ++ R +A   V  L     + ++ KT+ ++ G       D+     K
Sbjct: 3   LTNQRVVFTGTLQQMTRTQAIGLVHSLNGHCQSSVTSKTNFLVCGQYSKSLFDDSLYTKK 62

Query: 698 LEKAQQL-----GVKIMNEEQFLFLLQQY 721
            + A+ L      + I++E +F  L+ Q 
Sbjct: 63  EQTARDLIALGHEITILSEVEFYALISQQ 91


>gi|169830139|ref|YP_001700297.1| DNA polymerase III [Lysinibacillus sphaericus C3-41]
 gi|168994627|gb|ACA42167.1| DNA polymerase III [Lysinibacillus sphaericus C3-41]
          Length = 126

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 8/95 (8%)

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           +        ++ S    +K++VFTG L K+ R +A ++V   G  +   ++++TD II+G
Sbjct: 24  LDIIFSDPIESPSHPFYHKQIVFTGALSKMTRSEAAKHVKACGGFLQGTVTQQTDFIILG 83

Query: 692 DN---PGSKLEKAQQL-----GVKIMNEEQFLFLL 718
           D      +K  KA+QL      ++I+ E  FL+++
Sbjct: 84  DKRRGISTKQRKAEQLINLGQDIQILIESDFLWII 118


>gi|168177595|ref|ZP_02612259.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum NCTC 2916]
 gi|182670548|gb|EDT82522.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum NCTC 2916]
          Length = 309

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 14/84 (16%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702
           +VFTG L  + R++    V +L   V + +++KT  ++           +   +KL+KA 
Sbjct: 226 VVFTGGLASMTRNEVMILVGKLNGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAI 285

Query: 703 QL-----GVKIMNEEQFLFLLQQY 721
            L      +K +NEE FL   ++ 
Sbjct: 286 DLKKKGQNIKFLNEEAFLQKCKEK 309


>gi|187777136|ref|ZP_02993609.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC
           15579]
 gi|187774064|gb|EDU37866.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC
           15579]
          Length = 309

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 14/84 (16%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702
           +VFTG L  + R++A   V +L   V + +++KT  ++           +   +KL+KA 
Sbjct: 226 VVFTGGLASMTRNEAIILVGKLNGTVGSSVTKKTTCLVTNTKDIEDLNREEMSNKLKKAV 285

Query: 703 QL-----GVKIMNEEQFLFLLQQY 721
            L      +K +NEE FL   ++ 
Sbjct: 286 DLKKKGQNIKFLNEETFLQKCKEK 309


>gi|170755669|ref|YP_001779899.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str.
           Okra]
 gi|169120881|gb|ACA44717.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str.
           Okra]
          Length = 309

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 14/84 (16%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702
           +VFTG L  + R++A   V +L   V + +++KT  ++           +   +KL+KA 
Sbjct: 226 VVFTGGLASMTRNEAMILVGKLNGTVGSSVTKKTTCLVTNTKDIEDLNREEMSNKLKKAI 285

Query: 703 QL-----GVKIMNEEQFLFLLQQY 721
            L      +K +NEE FL   ++ 
Sbjct: 286 DLKKKGQNIKFLNEEAFLQKCKEK 309


>gi|307825547|ref|ZP_07655765.1| BRCT domain protein [Methylobacter tundripaludum SV96]
 gi|307733433|gb|EFO04292.1| BRCT domain protein [Methylobacter tundripaludum SV96]
          Length = 211

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 54/139 (38%), Gaps = 23/139 (16%)

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALL---------KEVSPSIGRHEKNVSSEIENKKLVF 654
           + DI+A  I+   +       +  L+              +   +++     +       
Sbjct: 70  IDDILADNIITQEEREDFYQTLSKLIGGTFQETGAAGGFSTSFGNQEPDELIVNGSTFCL 129

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSKLEKA---Q 702
           TG      R K ++ +T+LG + +  +++K D +++G            G K+EKA   Q
Sbjct: 130 TGAFITGTRDKCEQIITELGGIPAKSVTKKLDYLVIGALASRDWIATSHGRKIEKALLYQ 189

Query: 703 QLG--VKIMNEEQFLFLLQ 719
           + G  V I+ EE +   + 
Sbjct: 190 EQGSPVTILCEESWAKFIN 208


>gi|300933324|ref|ZP_07148580.1| hypothetical protein CresD4_04595 [Corynebacterium resistens DSM
           45100]
          Length = 277

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD- 692
                 + ++ + +  + +  TG ++   + +  + + Q G  V   +++KT ++I+G+ 
Sbjct: 183 VPETNEKADIDNPVYGQVVCVTGDVEPYDKGQIWDMIAQAGGEVGKNVTKKTTMLIIGEW 242

Query: 693 -NPGSKLEKAQQL-----GVKIMNEEQFLFLLQQ 720
               SK ++A++L      +K++   +FL ++ +
Sbjct: 243 ATTTSKEKRARELIDKGQEIKLVQLAEFLEMVGE 276


>gi|322804522|emb|CBZ02073.1| putative DNA polymerase III epsilon chain [Clostridium botulinum
           H04402 065]
          Length = 309

 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 14/84 (16%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702
           +VFTG L  + R++A   V +L   V + +++KT  ++           +   +KL+KA 
Sbjct: 226 VVFTGGLASMTRNEAMILVGKLNGTVGSSVTKKTTCLVTNTKDIEDLNREEMSNKLKKAI 285

Query: 703 QL-----GVKIMNEEQFLFLLQQY 721
            L      +K +NEE FL   ++ 
Sbjct: 286 DLKKKGQNIKFLNEEAFLQKCKEK 309


>gi|255524855|ref|ZP_05391804.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|255511425|gb|EET87716.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
          Length = 306

 Score = 74.1 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 14/82 (17%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKL 698
           +N+ +VFTG L  + R +A   V  LG    + ++RKT I++           +   +KL
Sbjct: 222 KNEVVVFTGRLDSMPRDEAMGLVRVLGGTTGSSVTRKTTILVTNMKDAKDLRREEMSTKL 281

Query: 699 EKAQQLGVK---I--MNEEQFL 715
           ++A  L +K   I  +NE++FL
Sbjct: 282 KRAVDLNIKGQNIRFLNEDEFL 303


>gi|149911915|ref|ZP_01900514.1| DNA ligase [Moritella sp. PE36]
 gi|149805008|gb|EDM65036.1| DNA ligase [Moritella sp. PE36]
          Length = 189

 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 18/133 (13%)

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEI 647
             +D+ + L  +P +       + E+ +   N        K +        +   +   +
Sbjct: 62  ATDDEVIQLKDLPYIKQK----LEEWEEFKLNGKVAHERAKTILKQEDIEREYSTLDEIL 117

Query: 648 E--NKK---LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-----SK 697
              N     +  TGTL  I R  A+  +   GA+V   + ++T  + +G N G     SK
Sbjct: 118 TTINMTDIRVALTGTLP-IPRADAKSLLESHGAIVMGSVGKQTSFLFMG-NTGRHEITSK 175

Query: 698 LEKAQQLGVKIMN 710
           ++KA  LGVKI+ 
Sbjct: 176 MKKAHDLGVKIIT 188


>gi|238764312|ref|ZP_04625263.1| DNA ligase B [Yersinia kristensenii ATCC 33638]
 gi|238697463|gb|EEP90229.1| DNA ligase B [Yersinia kristensenii ATCC 33638]
          Length = 318

 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 108/363 (29%), Gaps = 58/363 (15%)

Query: 278 FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAST 337
           F G    +         LP+  DG+V + D           A    W ++ K+   Q  T
Sbjct: 14  FSGSDVAHWRKLWFEMPLPFVTDGVVIRQD--DEPAGRYWHATPGNWSVAWKYPPPQQIT 71

Query: 338 RLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRV 397
            + DI   +GRTG +T + ++ PV I    I    +                    DI  
Sbjct: 72  EIKDIHFTVGRTGKVTAILQVVPVKIDDKWIRRVNV-----------GSIARWKQWDIVP 120

Query: 398 GDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR 457
           GD+V +  AG  IP++ +++      D                   ++ P          
Sbjct: 121 GDQVTITLAGLGIPRLDNVVWRVSQRD-------------------EITPPAANKFHQLS 161

Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ 517
           C   L+   +     +      A  ++   +      ++       I    D  +L   Q
Sbjct: 162 CFRLLSVECKPQFLARLAWLSGANGLDM--QNVGSGLWRELVHHGLINSLVDWLSLSIEQ 219

Query: 518 QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
             +      + G G V    +Y      R     +++ +LG        ++  +    S 
Sbjct: 220 IAA------VPGIGQVRAEKIYLQFQLARQQPFPQWLQALGFPQEIPIDSQWYSLQQRSI 273

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637
             +                    +  +G + A+ I  F  +P      + L ++      
Sbjct: 274 TEWRL------------------ISGIGAVRAKQINHFLHHPEIQMMADFLSQQGITGFR 315

Query: 638 RHE 640
             E
Sbjct: 316 PEE 318


>gi|229516132|ref|ZP_04405581.1| hypothetical protein VCC_000147 [Vibrio cholerae RC9]
 gi|229346782|gb|EEO11751.1| hypothetical protein VCC_000147 [Vibrio cholerae RC9]
          Length = 207

 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 17/148 (11%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
            +++ +E + +     DD   ++ V    D  A  I+    +  +    E   K  +   
Sbjct: 57  LESYNRESSLLDIGAGDDRDLIVTVEGFKDKTAFKIMAGMAS--HAELFE---KISTIIK 111

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696
            + +  V      +K+V TG     +    ++ +   G  +   +S KT ++I     GS
Sbjct: 112 FQQKVAVGKRFAGQKVVITG----FRDGALEKMIEAEGGEMQTSVSAKTTLVIAASISGS 167

Query: 697 --KLEKAQQLG------VKIMNEEQFLF 716
             KL+K   L       +K+M+   F  
Sbjct: 168 SGKLKKVHDLNNSGKASIKLMDLATFRK 195


>gi|207110629|ref|ZP_03244791.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_CA4C1]
          Length = 77

 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKI 661
           G  +A+++V FY +  N   + +L   ++P    +   ++  SS   NK +V TGTL K 
Sbjct: 1   GVEMARSLVNFYAS--NQEFIRSLFDLLNPKNSDMTEEKQKSSSVFNNKTIVLTGTLSK- 57

Query: 662 QRHKAQEYVTQLGAVVS 678
            R +  + +  LGA +S
Sbjct: 58  PRQEYAQTLENLGAKIS 74


>gi|227487575|ref|ZP_03917891.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092557|gb|EEI27869.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 310

 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 16/115 (13%)

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
             A+  +  +   +    E+  +S  +  + +VFTGTL++ +R   Q+ V+ +G +    
Sbjct: 196 RQAIPRVRADHVSAEALIEQYGNSPALVGEHVVFTGTLKRGKRTDVQQLVSAIGGIADKS 255

Query: 681 LSRKTDIIIVG--------D--NPGSKLEKAQQL---G--VKIMNEEQFLFLLQQ 720
           L++KT +++VG        +  +  SKL KA +L   G  +++++EE+F   L  
Sbjct: 256 LTKKTTLLVVGILDPRRWVEGCSGSSKLLKATKLRESGSPIEVISEEEFFNRLGD 310


>gi|90023505|ref|YP_529332.1| hypothetical protein Sde_3865 [Saccharophagus degradans 2-40]
 gi|89953105|gb|ABD83120.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Saccharophagus degradans 2-40]
          Length = 201

 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 26/136 (19%)

Query: 607 IIAQAIVEF-YQNPRNICAVEALLKEVSPSIGRHEKNVSS-----------EIENKKLVF 654
            +++A+ +       +   +  L      S    E   +S           E   K  +F
Sbjct: 62  KVSEALADGVLDEEESRELLTILRTISGESSEIGEVAKTSALPLCSPAPKLEFAGKSYLF 121

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKA---Q 702
           TGT     R + Q  +  LG VV++ +++K D++++G         +  G K+EKA   +
Sbjct: 122 TGTCAYGNRKQCQAAIETLGGVVASSVTKKLDVLVLGTYVTESWAHETFGRKIEKAMAYR 181

Query: 703 QLG--VKIMNEEQFLF 716
           + G  + I++E+ ++ 
Sbjct: 182 ESGLPIAIVSEQHWVN 197


>gi|296122435|ref|YP_003630213.1| hypothetical protein Plim_2188 [Planctomyces limnophilus DSM 3776]
 gi|296014775|gb|ADG68014.1| Tetratricopeptide TPR_2 repeat protein [Planctomyces limnophilus
           DSM 3776]
          Length = 442

 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 14/92 (15%)

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-------- 693
             ++ ++ +++ FTGTL  +   +A  YV Q G   +  +S++T +++VGD         
Sbjct: 18  KSTAPLQGERVTFTGTLASMTHREAAGYVEQFGGTFTTQVSQQTTLLVVGDEGWPLEEDG 77

Query: 694 -PGSKLEKAQQL---G--VKIMNEEQFLFLLQ 719
            P  KLE A++L   G  +KI++E ++L L++
Sbjct: 78  QPSLKLEAARELLERGFPIKILSEPEWLQLIE 109


>gi|325109435|ref|YP_004270503.1| BRCT domain protein [Planctomyces brasiliensis DSM 5305]
 gi|324969703|gb|ADY60481.1| BRCT domain protein [Planctomyces brasiliensis DSM 5305]
          Length = 465

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 16/105 (15%)

Query: 631 EVSPSIGRHEKNVSSEI--ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
            V  S     +   + +  E + +  TGTL  +   +A E + + G V +  +SR+T ++
Sbjct: 48  AVGQSSAAQPEPQENPLVLEGESVAITGTLASMTHDQAAEQIQRHGGVTTTHVSRQTTML 107

Query: 689 IVGD---------NPGSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
           ++G+          P  KL+ AQ L      ++I+ E  +L +L+
Sbjct: 108 VIGEEGWPLESDGKPSQKLQAAQALIDDGHSLRIVPETDWLRMLE 152


>gi|325188879|emb|CCA23408.1| replication factor C subunit putative [Albugo laibachii Nc14]
          Length = 774

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--------DNPGSKL 698
           +       +G  +   R      +   G  ++  ++R T+ +++G             K 
Sbjct: 102 LNGTTFALSGIFENCSRDDCIHLIKVCGGSITNSVTRNTNYLVLGTKLENGNDPKTSMKY 161

Query: 699 EKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727
           + A +  V+I+++     L+++   T   
Sbjct: 162 KDAIEKNVQIISQADLYDLIKEAPETPAK 190


>gi|308177075|ref|YP_003916481.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis
           Re117]
 gi|307744538|emb|CBT75510.1| putative DNA polymerase III subunit epsilon [Arthrobacter
           arilaitensis Re117]
          Length = 333

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 16/118 (13%)

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
             A     +E          + S  +  + +VFTG L  + R KA+E   + GA  ++ +
Sbjct: 216 QDAFNNWPQEGPNPDPNQNADPSHPLFGQTMVFTGNLS-MPRPKAKELAAEHGAQTASRV 274

Query: 682 SRKTDIIIVGDN------PGSKLE-KAQ------QLG--VKIMNEEQFLFLLQQYNTT 724
           +R T  ++VGD          +L  KA+      + G  V I++E +F+ ++  +  T
Sbjct: 275 TRATTALVVGDGFVPQDLANGRLTNKAKHVLRLREKGQRVSIISEGEFMQMVGGFGLT 332


>gi|325119805|emb|CBZ55358.1| putative NAD-dependent DNA ligase OB-fold domain containing protein
           [Neospora caninum Liverpool]
          Length = 1981

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 6/73 (8%)

Query: 18  RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
           ++E   L + +   D  Y+  +   + D+ YD LK R   +    P L     P  P + 
Sbjct: 285 KEEYHKLVETLRACDRAYHVGAHSPLPDAVYDQLKARLLHLEEVHPSLV---TPESPSSY 341

Query: 78  IGGEMNLSLFKVT 90
           +G         VT
Sbjct: 342 VGAGP---FASVT 351



 Score = 47.5 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 18/113 (15%)

Query: 147 KFVYAALRGDGHSGEDVSACIRAIPT---------------IPRVLSLNIPEIIEVRGEV 191
           + V A+ RG+G  GED+S  +R +                  P        + +E+RGE+
Sbjct: 707 ELVDASPRGNGSWGEDISHSVRVMHQAGRLPVAFSTRLLTSQPLAPGALANQFLEIRGEL 766

Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244
           ++ +++F    +     G+    + R+AA GI    +  +    L F  +GL 
Sbjct: 767 FLPRSNFQDYVERRRKEGKNTPLHERHAARGIA---DTGEHADLLCFAAYGLV 816


>gi|219110151|ref|XP_002176827.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411362|gb|EEC51290.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 609

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 21/123 (17%)

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ--------KIQRHKAQEYVTQLGAVVSAI 680
            +     I       S  ++ K++V TG            + + K ++ V   G  V+  
Sbjct: 272 RESFIVPIPGENGVASDALKGKRVVLTGVFPEVGGGRGLTLGKEKVKKMVESFGGRVTGS 331

Query: 681 LSRKTDI------------IIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727
           +S KTD+            +IVG +PG SK+ +A+   V +++ +     ++        
Sbjct: 332 VSGKTDMVLFTLSPSTNLKLIVGKDPGFSKVSQARGRSVTLLSLKDLKEGIESNCLEYTR 391

Query: 728 HDD 730
           H+D
Sbjct: 392 HED 394


>gi|72382253|ref|YP_291608.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL2A]
 gi|72002103|gb|AAZ57905.1| putative NAD-dependent DNA ligase (contains BRCT domain type II)
           [Prochlorococcus marinus str. NATL2A]
          Length = 210

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 77/217 (35%), Gaps = 26/217 (11%)

Query: 111 ITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI 170
               +  W  K        ++PKIDG  I +RY+ G+ V A  R D      +   IR I
Sbjct: 17  DKDCFSSWWAKLPEGSTMVVQPKIDGCAIGLRYKYGQLVDAYTRDDSE----IIENIRNI 72

Query: 171 PTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230
            +IP  +  ++   +E+ G +Y   ++                 +     S     ++ +
Sbjct: 73  NSIPLSIDDSLKVEVELEGVLYTPFSN--------------SKISIEQLLSNSFSEIDNS 118

Query: 231 DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290
               +  F +             +   L +++  GF V   +R  +    +  ++++   
Sbjct: 119 TSILFKAFQIF-------CSKSDELSDLTQLQNWGFEVPITLRT-DDPRQVKRWHSQWIK 170

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
                    +G+V K +    +  LG    SP W ++
Sbjct: 171 NELFSNLPTNGIVAKCNSSLTKNFLGSSPSSPNWALA 207


>gi|124025816|ref|YP_001014932.1| hypothetical protein NATL1_11091 [Prochlorococcus marinus str.
           NATL1A]
 gi|123960884|gb|ABM75667.1| Hypothetical protein NATL1_11091 [Prochlorococcus marinus str.
           NATL1A]
          Length = 200

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 78/217 (35%), Gaps = 26/217 (11%)

Query: 111 ITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI 170
               +  W  K        ++PKIDG  I +RY+ G+ V A  R D      +   IR I
Sbjct: 7   DKDCFSSWWAKLPEGSTMVVQPKIDGCAIGLRYKYGQLVDAYTRDDSE----IIENIRNI 62

Query: 171 PTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230
            +IP  +  ++   +E+ G +Y   ++                 +     S    +++ +
Sbjct: 63  NSIPLSIDDSLKVEVELEGVLYSPFSN--------------SKISIEQLLSNSFSKIDNS 108

Query: 231 DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290
               +  F +             +   L +++  GF V   +R  +    +  ++++   
Sbjct: 109 TSILFKAFQIF-------CSKSDELSDLTQLQNWGFEVPITLRT-DDPRQVKRWHSQWIK 160

Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
                    +G+V K +    +  LG    SP W ++
Sbjct: 161 NELFSNLPTNGIVAKCNSSLTKNFLGASPSSPNWALA 197


>gi|68486652|ref|XP_712820.1| hypothetical protein CaO19.6891 [Candida albicans SC5314]
 gi|46434235|gb|EAK93651.1| hypothetical protein CaO19.6891 [Candida albicans SC5314]
          Length = 688

 Score = 71.8 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716
           +  + R  A++   Q GA V+  +S KT ++++G + G SK++K +Q  +K ++E  F+ 
Sbjct: 1   MPNLDRGTAEQTAKQYGAKVTKSISGKTSLVVLGADAGPSKVQKIKQHKIKAIDEAGFIK 60

Query: 717 LLQ 719
           LL+
Sbjct: 61  LLE 63


>gi|92115957|ref|YP_575686.1| exonuclease [Nitrobacter hamburgensis X14]
 gi|91798851|gb|ABE61226.1| Exonuclease [Nitrobacter hamburgensis X14]
          Length = 334

 Score = 71.8 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 15/93 (16%)

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----DNPG-- 695
           N       + +VFTG L  I R +A +   +LG  V   ++++T ++  G       G  
Sbjct: 194 NPDGPFSGETIVFTGEL-NIPRSEAADIAKRLGFRVEDGVTKRTTVLCAGVQDRTKTGGY 252

Query: 696 ---SKLEKAQQL-----GVKIMNEEQFLFLLQQ 720
              SK  KA+ L      ++I++E  F  ++ +
Sbjct: 253 DKSSKHRKAESLAGLGQDIRILSEGDFWAIVPK 285


>gi|332557484|ref|ZP_08411806.1| Exonuclease [Rhodobacter sphaeroides WS8N]
 gi|332275196|gb|EGJ20511.1| Exonuclease [Rhodobacter sphaeroides WS8N]
          Length = 309

 Score = 71.8 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 15/99 (15%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN- 693
              R   +     E   +VFTG+L  + R +A +     G  V A ++++T +++VGD  
Sbjct: 210 EPVRRAPSPGRAFEGCAVVFTGSLS-LSRKEAADLAAARGMTVLAGVTKQTTLLVVGDQD 268

Query: 694 ----PG----SKLEKAQ---QLG--VKIMNEEQFLFLLQ 719
                G    SK  KA+     G  ++I+ E +FL ++Q
Sbjct: 269 LSCLAGQLKSSKHRKAEACIANGQPIRIIGEAEFLTMVQ 307


>gi|6739583|gb|AAF27316.1| unknown [Lactococcus lactis]
          Length = 98

 Score = 71.4 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 16/90 (17%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----D-----NPGSK 697
           +EN+  VFTGTL  + R +AQ  ++ L     + +++KT  ++ G    D     +P  K
Sbjct: 2   LENEYFVFTGTLTTMTRKQAQAIISGLEGHNQSSVTKKTTRLVTGYFPIDLIKGYSPSQK 61

Query: 698 LEKAQQLGVK------IMNEEQFLFLLQQY 721
           L +A+Q  ++      IM+E++F+  L Q+
Sbjct: 62  LTEAEQ-AIESGQPLIIMSEKEFVDFLAQF 90


>gi|119960742|ref|YP_948285.1| DNA polymerase III epsilon subunit [Arthrobacter aurescens TC1]
 gi|119947601|gb|ABM06512.1| putative DNA polymerase III epsilon subunit [Arthrobacter aurescens
           TC1]
          Length = 336

 Score = 71.4 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 47/104 (45%), Gaps = 16/104 (15%)

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
           +E    +          +  + +VFTG L  I R +A+     +GA   + ++ +T ++I
Sbjct: 231 EEGPNPLPNPAAEPGHPLFGQTVVFTGDLA-ITRPEAKSRAADMGARPESRVTARTTVLI 289

Query: 690 VGDN--PG--------SKLEKAQQL-----GVKIMNEEQFLFLL 718
           VGD    G         K ++  +L      +++++E +FL ++
Sbjct: 290 VGDGFVAGDLRAGRLTGKAKRVLELHAKGQQIEVVSEGEFLQMV 333


>gi|406012|gb|AAD10575.1| Significant homology to DNA ligase M74792 [Mycoplasma genitalium]
          Length = 60

 Score = 71.4 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 26 QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77
            I  +D  YY  S+P+I D EYD L +    +    PDL +    + P  +
Sbjct: 1  NLIKNYDYHYYVLSEPLIDDFEYDMLYKSLQQLEKDHPDLIQI---DSPTQR 49


>gi|153956080|ref|YP_001396845.1| DNA ligase [Clostridium kluyveri DSM 555]
 gi|146348938|gb|EDK35474.1| DNA ligase [Clostridium kluyveri DSM 555]
          Length = 60

 Score = 71.0 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 8/67 (11%)

Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
            + ++  L + I      YY   +  I D EYD L  +   +   +P+ AR    + P 
Sbjct: 2  DIKNKVEGLSKLIE-----YYNKDESEITDHEYDKLSLKLRKLEKEYPEYARK---DSPT 53

Query: 76 NKIGGEM 82
           K+GG +
Sbjct: 54 QKVGGSI 60


>gi|68486597|ref|XP_712849.1| hypothetical protein CaO19.14180 [Candida albicans SC5314]
 gi|46434265|gb|EAK93680.1| hypothetical protein CaO19.14180 [Candida albicans SC5314]
          Length = 688

 Score = 70.6 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716
           +  + R  A++   Q GA V+  +S KT ++++G + G SK++K +Q  +K ++E  F+ 
Sbjct: 1   MPNLDRGTAEQTAKQYGAKVTKSISGKTSLVVLGTDAGPSKVQKIKQHKIKAIDEAGFIK 60

Query: 717 LLQ 719
           LL+
Sbjct: 61  LLE 63


>gi|304311280|ref|YP_003810878.1| probable NAD-dependent DNA ligase (contains BRCT domain type II)
           [gamma proteobacterium HdN1]
 gi|301797013|emb|CBL45226.1| probable NAD-dependent DNA ligase (contains BRCT domain type II)
           [gamma proteobacterium HdN1]
          Length = 307

 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSK 697
             +     TG   +    + +E +T LG    + +S+K + ++VG +          G K
Sbjct: 211 FADAVFCLTGKSSEYTCDEFKELITSLGGKAVSGISKKVNYLVVGADGNPCSAYACYGRK 270

Query: 698 LEKAQQL 704
           +EKA +L
Sbjct: 271 IEKAVEL 277


>gi|330792427|ref|XP_003284290.1| hypothetical protein DICPUDRAFT_96642 [Dictyostelium purpureum]
 gi|325085743|gb|EGC39144.1| hypothetical protein DICPUDRAFT_96642 [Dictyostelium purpureum]
          Length = 1334

 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQL-GVKI 708
               +G L  ++R +A+  + + G  V+    +K   +IVG   G  KLEKA+++ GV  
Sbjct: 609 TFFISGVLDSLERDEAENLIKKYGGNVAKSAVKKLTHMIVGTGAGEQKLEKAKKIRGVVF 668

Query: 709 MNEEQFLFLLQQ 720
           ++E+    ++ +
Sbjct: 669 IDEDGLFEMISK 680


>gi|291531551|emb|CBK97136.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eubacterium siraeum 70/3]
          Length = 361

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 14/116 (12%)

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671
           I +       +  +    K     +      V  E+ NK +  TG      + + QE ++
Sbjct: 243 IEDGIIEQSELDYLLEFFKAQINPLNAEIGAVDIELSNKSICLTGDFDYGSKQEVQERLS 302

Query: 672 QLGAVVSAILSRKTDIIIVGDNP---------GSKLEKAQQL---G--VKIMNEEQ 713
           ++GA V + ++RKTDI+++G+           G+K +KA +L   G  + I+ E+ 
Sbjct: 303 EIGATVVSNVTRKTDILLIGEKGSDSWACGTYGTKAKKAIELRSKGYPIMILKEKD 358


>gi|254994697|ref|ZP_05276887.1| DNA ligase [Anaplasma marginale str. Mississippi]
          Length = 47

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 29/43 (67%)

Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
           +  +S  T +++ G NPGSK EKA  L V++++E+ ++ +++ 
Sbjct: 2   ANSVSANTWLLVAGSNPGSKHEKALSLNVRVIDEQTWVKMVED 44


>gi|156933190|ref|YP_001437106.1| hypothetical protein ESA_01001 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531444|gb|ABU76270.1| hypothetical protein ESA_01001 [Cronobacter sakazakii ATCC BAA-894]
          Length = 301

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 19/127 (14%)

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           +++ +A+++F     +   V+ L   +       +     ++  K    TG     +R  
Sbjct: 179 EVLHKALIDFTGCDLDSGTVDGLATRL-----PVDDIADVKVSGKAFCLTGIFLAGKRSA 233

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKA---QQLG--VKIMNE 711
            ++ + + G  +S+ +++K D +++G          + G K+EKA   +  G  +KI+ E
Sbjct: 234 IEDLIQKQGGTISSGVTKKIDYLVIGTLSSRDWRFSSHGRKIEKAVTYRDDGAQIKIITE 293

Query: 712 EQFLFLL 718
           E  +  L
Sbjct: 294 EMLIEAL 300


>gi|406360|gb|AAD12433.1| homology to DNA ligase M36417 [Mycoplasma genitalium]
          Length = 98

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 10/97 (10%)

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
           D     L D+I   +   + R +  LGI+HVG  +A++LA ++ + +             
Sbjct: 6   DKLFNKLVDNIENSKQKGMARLLTGLGIKHVGNVLAKNLANHFKNIKALQHA-------- 57

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
                +LI +  VG  +A+++  ++ +P ++  +E L
Sbjct: 58  --SLENLISLNDVGITVAESLYNWFHDPNHLQLIEQL 92


>gi|237785374|ref|YP_002906079.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758286|gb|ACR17536.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 555

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
                  + + +  +  K +  TG    + + +  + + Q G  V   +++KT +++ G+
Sbjct: 460 DIPETNTDADPNGPLFGKNVTLTGEFSPLDKGQLWQAIAQAGGTVGKNVTKKTTLLVCGE 519

Query: 693 --NPGSKLEKAQQLG-----VKIMNEEQFLFLLQ 719
                SK ++A++L      ++I N+ Q L  L 
Sbjct: 520 WNGKTSKQKRAEELQEKGQEIEIWNQGQLLDALD 553


>gi|330828876|ref|YP_004391828.1| NAD-dependent DNA ligase [Aeromonas veronii B565]
 gi|328804012|gb|AEB49211.1| NAD-dependent DNA ligase [Aeromonas veronii B565]
          Length = 303

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 92/280 (32%), Gaps = 47/280 (16%)

Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
            +    +  L     D     ++  +      +  +L         ++   +        
Sbjct: 22  KQLNNLMGILDGIIADSLIDEQEILYLDTWLKESASLNGWIFRELREMVANVLQDGKLCE 81

Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK-----------------YYLSYQN 579
                +       +E +    G+     E  + L +                 +YLS+  
Sbjct: 82  EEKVHLMSALPRLMETYRHLPGVDFYSEESDKLLLEGLCQGLMGDQQLSDDEIHYLSWWM 141

Query: 580 FAQEINNIIAHNNDDWLSLIRV--PLVGDIIAQ-------AIVEFYQNPRNICAVEALLK 630
               +          + ++ R+    +  I A+        ++ F  NP    AV  +  
Sbjct: 142 KQNSMLRAHYPGKQLYQTVERILLDGI--ITAEEREELQQQLMLFIGNPFEQGAVTGMAT 199

Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
           +++ S    +      + +  + FTG      R + +E    LGA     +++K D +I+
Sbjct: 200 KLAISNSEIDT-----LYDCTVCFTGMFLSGTRRQCEETALLLGATPQDSVTQKLDYLII 254

Query: 691 GD---------NPGSKLEKA---QQLG--VKIMNEEQFLF 716
           G+         + G K+EKA   Q+ G  V+I+ EE +L 
Sbjct: 255 GELSSRDWRFSSYGRKIEKAMLLQEKGHSVRIVTEEAWLA 294


>gi|326789827|ref|YP_004307648.1| exonuclease RNase T and DNA polymerase III [Clostridium lentocellum
           DSM 5427]
 gi|326540591|gb|ADZ82450.1| Exonuclease RNase T and DNA polymerase III [Clostridium lentocellum
           DSM 5427]
          Length = 305

 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 16/90 (17%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV----------GDN 693
           S  + +  ++FTGTL  + R  A + V  +G      + +  + +++          G+ 
Sbjct: 217 SHPLYDMTVIFTGTLSSMLRRDAMQKVVDVGGHCKDTVGKSANYLVIGIQDYSRFVDGEK 276

Query: 694 PGSKLEKAQQL-----GVKIMNEEQFLFLL 718
             SKL+KA+ L      ++I++E  FL +L
Sbjct: 277 -SSKLKKAELLISEGYDLEIIDESTFLQML 305


>gi|218547976|ref|YP_002381767.1| hypothetical protein EFER_0581 [Escherichia fergusonii ATCC 35469]
 gi|218355517|emb|CAQ88128.1| conserved hypothetical protein from phage origin [Escherichia
           fergusonii ATCC 35469]
          Length = 306

 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 20/124 (16%)

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +A+V+F         V+ L   +   +G   +     +E K    TGT    +R   +  
Sbjct: 184 KALVDFTGCDLESGVVDGLATRLPIDVGASIE-----LEGKTYCLTGTFVAGKRAVVENL 238

Query: 670 VTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQQL------GVKIMNEEQF 714
           +   G  +S+ +++K D +++G          + G K+EKA          +KI++EE  
Sbjct: 239 IKNAGGNISSGITQKLDFLVIGTLSSRDWKFSSHGRKIEKAISYRDDNGAKLKIISEEML 298

Query: 715 LFLL 718
              L
Sbjct: 299 FDAL 302


>gi|227892034|ref|ZP_04009839.1| possible DNA polymerase III subunit epsilon [Lactobacillus
           salivarius ATCC 11741]
 gi|227866144|gb|EEJ73565.1| possible DNA polymerase III subunit epsilon [Lactobacillus
           salivarius ATCC 11741]
          Length = 95

 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 14/88 (15%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV---------GDNPGS 696
             +NK +VFTG+LQ + R  A E +   G +V   +S++TD +++          +    
Sbjct: 8   TFKNKCVVFTGSLQSMLRKDAIEKINAAGGIVKNYVSKETDYLVIAPRQLDMFEEERKSK 67

Query: 697 KLEKAQQLG-----VKIMNEEQFLFLLQ 719
           K   A+++      +KI++EE+FL +L+
Sbjct: 68  KQIAAEKINMNGGEIKIISEEKFLSMLK 95


>gi|293433432|ref|ZP_06661860.1| hypothetical protein ECCG_01557 [Escherichia coli B088]
 gi|291324251|gb|EFE63673.1| hypothetical protein ECCG_01557 [Escherichia coli B088]
 gi|324115563|gb|EGC09502.1| hypothetical protein ERBG_04476 [Escherichia coli E1167]
          Length = 296

 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 20/124 (16%)

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669
           +A+V+F         V+ L   +   +G   +     +E K    TGT    +R   +  
Sbjct: 174 KALVDFTGCDLESGVVDGLATRLPIDVGASIE-----LEGKTYCLTGTFVAGKRAVVENL 228

Query: 670 VTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQQL------GVKIMNEEQF 714
           +   G  +S+ +++K D +++G          + G K+EKA          +KI++EE  
Sbjct: 229 IKNAGGNISSGITQKLDFLVIGTLSSRDWKFSSHGRKIEKAISYRDDNGAKLKIISEEML 288

Query: 715 LFLL 718
              L
Sbjct: 289 FDAL 292


>gi|306819092|ref|ZP_07452806.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus
           mulieris ATCC 35239]
 gi|304648068|gb|EFM45379.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus
           mulieris ATCC 35239]
          Length = 305

 Score = 68.7 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 19/110 (17%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           + L  E    I  + +     +E +++VFTGTL+  +R   ++ V   G      L+++T
Sbjct: 200 DQLAAEELIKIYGNTRT----LEGERVVFTGTLKHGRRADVEQLVLAAGGATDKNLTKQT 255

Query: 686 DIIIV----------GDNPGSKLEKAQQL---G--VKIMNEEQFLFLLQQ 720
            +++V          G +   KL KA QL   G  +++++EE+F   L  
Sbjct: 256 TLLVVGIPNPSAWKEGTSASRKLMKASQLRDSGSPIEVISEEEFFNRLSD 305


>gi|269977446|ref|ZP_06184418.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
 gi|269934362|gb|EEZ90924.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
          Length = 303

 Score = 68.7 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 19/110 (17%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
           + L  E    I  + +     +E +++VFTGTL+  +R   ++ V   G      L+++T
Sbjct: 198 DQLAAEELIKIYGNTRT----LEGERVVFTGTLKHGRRADVEQLVLAAGGATDKNLTKQT 253

Query: 686 DIIIV----------GDNPGSKLEKAQQL---G--VKIMNEEQFLFLLQQ 720
            +++V          G +   KL KA QL   G  +++++EE+F   L  
Sbjct: 254 TLLVVGIPNPSAWKEGTSASRKLMKASQLRDSGSPIEVISEEEFFNRLSD 303


>gi|329570556|gb|EGG52279.1| hypothetical protein HMPREF9520_02996 [Enterococcus faecalis
           TX1467]
          Length = 106

 Score = 68.7 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 14/89 (15%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-------DNP--GSK 697
           + N+++VFTGTLQ++ R +    V  L     + ++ KT+ ++ G       D+     K
Sbjct: 10  LTNQRVVFTGTLQQMTRTQTDGLVHSLNGHCQSSVTSKTNFLVCGQYSKSLFDDSLYTKK 69

Query: 698 LEKAQQL-----GVKIMNEEQFLFLLQQY 721
            + A+ L      + I++E +F  L+ Q 
Sbjct: 70  EQTARDLIALGHEITILSEVEFYALISQQ 98


>gi|309810273|ref|ZP_07704115.1| exonuclease [Dermacoccus sp. Ellin185]
 gi|308435765|gb|EFP59555.1| exonuclease [Dermacoccus sp. Ellin185]
          Length = 534

 Score = 68.3 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 15/105 (14%)

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
             ++      + + S  +  + +VFTG L  + R  A + V   G   +   ++KT++++
Sbjct: 207 AALALPDANPDADPSGYLYGRTVVFTGALMSMTRQMAWDAVADAGGQPAPTTTKKTNVLV 266

Query: 690 VGD-NPGS---------KLEKA---QQLG--VKIMNEEQFLFLLQ 719
           +GD NP S         K  KA   Q  G  +++M E  FL +L 
Sbjct: 267 IGDFNPASLRPRANVSGKAAKAFALQDKGQDIELMTEADFLQVLD 311


>gi|123966756|ref|YP_001011837.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           MIT 9515]
 gi|123201122|gb|ABM72730.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           MIT 9515]
          Length = 249

 Score = 68.3 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 58/308 (18%), Positives = 100/308 (32%), Gaps = 64/308 (20%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           LE+ + + D+ Y +    +I D  +D L++             +  +   P         
Sbjct: 5   LEKNVKHLDEQY-RIGNALISDKAFDQLEKNLLRTDPQCDYFNQKNNLLLP--------- 54

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
                        SL      E+  +F+  + +        +   +++PKIDG  I I Y
Sbjct: 55  -------------SLAN----ENHIEFLASLLK--------NTRLSIQPKIDGCAIAINY 89

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
             GKF  A  R    +G DV++ I+ I  +P  L +      +VRGE+Y           
Sbjct: 90  INGKFNKAITR----TGFDVTSKIKKIKDVPSRLPIQR--DFQVRGELYSPN---QTPYF 140

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
                        R A S               +F    +          QYE L  ++ 
Sbjct: 141 SQKITSEFLNNKKRIAKS--------------FSFCCFQILNGR----LNQYETLNYLKK 182

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG-ERARSP 322
            GF   +     N    +  +       +    Y  DG+V K++   LQ       ++  
Sbjct: 183 CGFNTPHSYFT-NFTSQVELFRKRWLDGKIFSKYPTDGIVIKINSRKLQLLRETNLSKYN 241

Query: 323 RWMISHKF 330
            W  + K 
Sbjct: 242 EWQYAIKK 249


>gi|315223236|ref|ZP_07865097.1| BRCA1 domain protein [Streptococcus anginosus F0211]
 gi|315187668|gb|EFU21422.1| BRCA1 domain protein [Streptococcus anginosus F0211]
          Length = 100

 Score = 67.9 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 14/89 (15%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGS 696
           ++ +KK+V TG+L+ + R +   ++   GA V   +S +TDI+IVG         D    
Sbjct: 9   KLSDKKIVITGSLRPMTREEVILFLKDQGATVQGFISAQTDILIVGHKQLDLFQVDKRSK 68

Query: 697 KLEKAQQL-----GVKIMNEEQFLFLLQQ 720
           K E A         + +++EE+F  ++++
Sbjct: 69  KYEAALSRIAEGQAITLLSEEEFFQIVKK 97


>gi|34764323|ref|ZP_00145155.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27885905|gb|EAA23249.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 89

 Score = 67.9 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 53  RRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFI 111
           ++   +   +P        + P   +G  +      KV H+ P LSL   +NI ++  FI
Sbjct: 5   KKIGKLRRKYPQYKEI---SSPTTSVGASLKENKFKKVEHTHPMLSLANSYNIGEIVDFI 61

Query: 112 TRIYRFWQKKDDNSIFFTLE 131
            RI +   K+    + + LE
Sbjct: 62  ERIKKKITKE--QELKYCLE 79


>gi|255724588|ref|XP_002547223.1| activator 1 95 kDa subunit [Candida tropicalis MYA-3404]
 gi|240135114|gb|EER34668.1| activator 1 95 kDa subunit [Candida tropicalis MYA-3404]
          Length = 695

 Score = 67.9 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716
           +  + R  A++   Q GA V+  +S +T ++++G   G SK++K  QL +K ++E  F+ 
Sbjct: 1   MPNLDRTTAEQTAKQYGANVTKSISGRTSLVVLGAEAGPSKVKKINQLKIKAIDEAGFIK 60

Query: 717 LLQ 719
           LL+
Sbjct: 61  LLE 63


>gi|297194325|ref|ZP_06911723.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152225|gb|EFH31608.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 658

 Score = 67.9 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 644 SSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPGS-KLEK 700
              + +  K+  TG    + R +        G  V   +SR T +++  D + GS K  +
Sbjct: 222 GGPLVQGMKIAVTGP-TAMSRPELVARAVAAGLNVMGSVSRHTGVLVTNDRSSGSAKARR 280

Query: 701 AQQLGVKIMNEEQFLFLLQQ 720
           A   GV +++E++FL LL+ 
Sbjct: 281 AVAEGVPVIDEQEFLRLLED 300


>gi|301299722|ref|ZP_07205973.1| conserved hypothetical protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852696|gb|EFK80329.1| conserved hypothetical protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 89

 Score = 67.5 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 14/88 (15%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV---------GDNPGS 696
             +NK +VFTG+LQ + R  A E +   G +V   +SR+TD +++          +    
Sbjct: 2   TFKNKCVVFTGSLQSMLRKDAIEKINAAGGIVKNYVSRETDYLVIAPRQLDMFEEERKSK 61

Query: 697 KLEKAQQLG-----VKIMNEEQFLFLLQ 719
           K   A+++      +KI++EE+FL +L+
Sbjct: 62  KQIAAEKINMNGGEIKIISEEKFLSMLK 89


>gi|295397429|ref|ZP_06807516.1| DNA polymerase III [Aerococcus viridans ATCC 11563]
 gi|294974330|gb|EFG50070.1| DNA polymerase III [Aerococcus viridans ATCC 11563]
          Length = 314

 Score = 67.5 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 41/121 (33%)

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
              VE L  E S             + NK +VF+G L  + R +A +     GA++   +
Sbjct: 210 QIKVEDLKAETSDFNPM------HPLFNKTIVFSGDLDNMSREEAMQASLNKGAILGKSV 263

Query: 682 SRKTDIIIV-----------------------GDNPGSKLEKAQQLGVKIMNEEQFLFLL 718
           + KTD +IV                       G+             +KI++E+ F  LL
Sbjct: 264 TLKTDYLIVSQSDLNKQKKTSKFKKAEEYANRGEK------------IKIISEKIFKQLL 311

Query: 719 Q 719
           +
Sbjct: 312 E 312


>gi|319440291|ref|ZP_07989447.1| hypothetical protein CvarD4_00856 [Corynebacterium variabile DSM
           44702]
          Length = 287

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 42/87 (48%), Gaps = 7/87 (8%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKL 698
            +    +  + +  TG  +  ++ +  + +   G  V   +++KT ++++G  D+  SK 
Sbjct: 185 ADADGPVFGQNVTVTGDFEPYEKGEVWDMIAAAGGTVGKNVTKKTTVLVLGTWDSVTSKE 244

Query: 699 EKAQQL-----GVKIMNEEQFLFLLQQ 720
           ++A++L      +++    +FL  + +
Sbjct: 245 KRARELQEKGQDIQLWTFAEFLEKVGR 271


>gi|294656132|ref|XP_458382.2| DEHA2C15994p [Debaryomyces hansenii CBS767]
 gi|199430883|emb|CAG86464.2| DEHA2C15994p [Debaryomyces hansenii]
          Length = 915

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           PS    E   +    +    ++FTG L +++R  A+    + GA V+  +S KT ++++G
Sbjct: 202 PSGEELEIPEAQPNCLSGLTMIFTGILPRLERTVAENLAKKYGAKVTKSISGKTSLVVIG 261

Query: 692 DNPG 695
           +  G
Sbjct: 262 EEAG 265


>gi|33601305|ref|NP_888865.1| hypothetical protein BB2322 [Bordetella bronchiseptica RB50]
 gi|33575741|emb|CAE32818.1| hypothetical protein BB2322 [Bordetella bronchiseptica RB50]
          Length = 224

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 14/80 (17%)

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NP-------GSKLEKA 701
              FTG      R    + V + G    + +++K D +++G+  NP       G K++KA
Sbjct: 141 TFCFTGKFTSGTRDWCSQQVVERGGSSLSNVTKKLDYLVIGELGNPDWLHSTFGLKIKKA 200

Query: 702 ---QQLGV--KIMNEEQFLF 716
              +  GV  +I++E+ +  
Sbjct: 201 VDYRSSGVALRIISEQAWYE 220


>gi|33595923|ref|NP_883566.1| hypothetical protein BPP1254 [Bordetella parapertussis 12822]
 gi|33566002|emb|CAE36556.1| hypothetical protein BPP1254 [Bordetella parapertussis]
          Length = 224

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 14/80 (17%)

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NP-------GSKLEKA 701
              FTG      R    + V + G    + +++K D +++G+  NP       G K++KA
Sbjct: 141 TFCFTGKFTSGTRDWCSQQVVERGGSSLSNVTKKLDYLVIGELGNPDWLHSTFGLKIKKA 200

Query: 702 ---QQLGV--KIMNEEQFLF 716
              +  GV  +I++E+ +  
Sbjct: 201 VDYRSSGVALRIISEQAWYE 220


>gi|320582361|gb|EFW96578.1| Replication factor C subunit [Pichia angusta DL-1]
          Length = 804

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
           +    +VFTG L  I R +     ++ GA V+  +S KT ++++G   G
Sbjct: 117 LNGLTIVFTGILPTIDRDECVRIASKYGAKVTKSISGKTSLVVIGHEAG 165


>gi|238898092|ref|YP_002923773.1| NAD-dependent DNA ligase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465851|gb|ACQ67625.1| NAD-dependent DNA ligase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 294

 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 15/85 (17%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKL 698
             K +  TG     +R   ++ + + GA V   +++K D +IVG          + G K+
Sbjct: 206 SGKTVCLTGEFIYGKRSVCEQEIIRQGANVIGNVTKKLDYLIVGTMSSKNWRYTSHGRKI 265

Query: 699 EKAQ----QLGVK--IMNEEQFLFL 717
           EKA     + G+   I+NEEQ+   
Sbjct: 266 EKAVHYRDEKGIPLKIINEEQWQDF 290


>gi|307330749|ref|ZP_07609886.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
 gi|306883641|gb|EFN14690.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
          Length = 328

 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKL 698
           +     ++  ++ F+G    + R   ++   + G  V+  +SR T +++  D  +P SK 
Sbjct: 239 EPGGQLVQGMRVAFSGD-TSVDRELLEDRAIEAGLHVATSVSRLTSVLVTNDPDSPTSKT 297

Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720
            KA+  G  +++E  F+ LLQ 
Sbjct: 298 AKARSFGTPVIDEAAFMQLLQD 319


>gi|300175670|emb|CBK20981.2| unnamed protein product [Blastocystis hominis]
          Length = 344

 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 8/59 (13%)

Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNP--------GSKLEKAQQLGVKIMNEEQFLFLL 718
           E +++ G +  + +S KT+ ++VG           GSK +KA +  V+I+NE++ L ++
Sbjct: 3   ELISRYGGIERSAVSGKTNYLVVGFEMEDGRPITEGSKYKKAVEKNVRIINEDELLAMI 61


>gi|303290318|ref|XP_003064446.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454044|gb|EEH51351.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 370

 Score = 66.0 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 9/66 (13%)

Query: 647 IENKKLVFTGTLQ--------KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SK 697
           +  K +V TG            + + KA+    Q G  V+  +S +TD+++VG  PG SK
Sbjct: 224 LAGKTIVLTGVFPELGGGCGLNLGKDKARRLCEQFGGRVTTAVSGRTDLLLVGSEPGASK 283

Query: 698 LEKAQQ 703
           + KA+ 
Sbjct: 284 VAKARS 289


>gi|149178535|ref|ZP_01857123.1| probable O-linked GlcNAc transferase [Planctomyces maris DSM 8797]
 gi|148842650|gb|EDL57025.1| probable O-linked GlcNAc transferase [Planctomyces maris DSM 8797]
          Length = 421

 Score = 66.0 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 14/87 (16%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP------GS---K 697
           ++ +++VFTGTL  +   KA E+V + G   +  +SR+T +++VG+        GS    
Sbjct: 19  LQGERVVFTGTLASMTHQKAGEFVEEHGGQAAQHVSRQTTLLVVGEEGWPLEADGSPSVN 78

Query: 698 LEKAQQL---G--VKIMNEEQFLFLLQ 719
           L  AQ+L   G  ++I+ E  +L L++
Sbjct: 79  LTHAQELIAEGVAIQIIKESDWLALIE 105


>gi|83646824|ref|YP_435259.1| NAD-dependent DNA ligase [Hahella chejuensis KCTC 2396]
 gi|83634867|gb|ABC30834.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Hahella
           chejuensis KCTC 2396]
          Length = 202

 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 25/126 (19%)

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS-----------EIENKKLVFTGTLQKIQRH 664
             N  +   +  L K         E   +S             + +  +FTG      R 
Sbjct: 73  LDNEESSELLSVLRKISGDESYIGEVAKASRLPIIEPMPPITFQGRSFLFTGVCALGTRE 132

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKA---QQLGVK--IMN 710
           + QE     G V++  +++  D +++G         +N G K+EKA   +  GV   I+ 
Sbjct: 133 QCQEATEARGGVIAKNVTKSLDYLVIGTYVTDSWVHENFGRKIEKAMTYRDSGVPVVIIT 192

Query: 711 EEQFLF 716
           E+ +  
Sbjct: 193 EQHWAQ 198


>gi|4204105|gb|AAD10576.1| Siginificant homology to DNA ligase M74792 [Mycoplasma genitalium]
          Length = 50

 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 91  HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142
           H+ P LSLE  ++ +++  FI  I      + ++   F +EPKIDG  I++ 
Sbjct: 3   HNSPMLSLENAFSTKEIANFIDNI----NFQTNSKNEFVVEPKIDGVSISLT 50


>gi|227548945|ref|ZP_03978994.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227078970|gb|EEI16933.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 472

 Score = 65.2 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 7/93 (7%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +      + + +S +    +  TG  +   + +    +   GA V   +++KT I+I G+
Sbjct: 372 TIPEPDPQADPNSPLYGHNVTLTGEFEPFDKGQLWSGIAAQGAQVGKNVTKKTTILITGE 431

Query: 693 --NPGSKLEKAQQL-----GVKIMNEEQFLFLL 718
                SK ++A++L      ++I + EQ L  L
Sbjct: 432 WATMTSKEKRARELMDKGQDIQIWSAEQLLDAL 464


>gi|257082986|ref|ZP_05577347.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256991016|gb|EEU78318.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
          Length = 98

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 14/88 (15%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----D-----NPGSK 697
           +EN+  VFTGTL  + R +AQ  +  L       +++KT  ++ G    D     +P  K
Sbjct: 2   LENEYFVFTGTLTTMTRRQAQSIIIGLKGHNQNAVTKKTTRLVTGYFPIDLIKGYSPSHK 61

Query: 698 LEKAQQLG-----VKIMNEEQFLFLLQQ 720
           + +A+Q       + IM E++F+  L Q
Sbjct: 62  ISEAKQSKRKGQRIMIMTEKEFIEFLAQ 89


>gi|27922874|gb|AAO25527.1| DNA ligase [Paramecium aurelia]
          Length = 143

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 20/144 (13%)

Query: 89  VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148
           V H +    + K+ +   L  ++      W           ++PK+DG  +T+ Y  GK 
Sbjct: 20  VMHPVAHTGVRKMVDKNALSLWMRERSDLW-----------VQPKVDGVAVTLVYRDGKL 68

Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208
             A  RG+G  GED +  +  I  +P+ +S        ++GE+++ +             
Sbjct: 69  NKAISRGNGLKGEDWTQKVSLISAVPQTVSGP-LANSTLQGEIFLQREG--------HIQ 119

Query: 209 GRKPYANPRNAASGILRRLNPTDI 232
            +    N R   +G++ R + +D 
Sbjct: 120 QQMGGINARAKVAGLMXRQDDSDT 143


>gi|325963798|ref|YP_004241704.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469885|gb|ADX73570.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 334

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 50/108 (46%), Gaps = 24/108 (22%)

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
           +E +  +   +      +  + +VFTG L  + R +A++    +GA   + ++ +T +++
Sbjct: 223 EEGANPLPNPDAEPGHPLYGQTVVFTGQLA-MGRPEAKKRSADVGARPESRVTGRTTVLV 281

Query: 690 VGDN-----------PGSKLEKAQ---QLG-----VKIMNEEQFLFLL 718
           VGD             G    KA+   +L      +++++E +FL ++
Sbjct: 282 VGDGFVASDLRSGRLTG----KARRVLELHERGQAIEVLSEGEFLQMV 325


>gi|328463820|gb|EGF35363.1| DNA polymerase III PolC [Lactobacillus helveticus MTCC 5463]
          Length = 210

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
             +    + + ++   +K++  TG L    R +  + +  +G        + TD  IVG 
Sbjct: 115 DIAGDSTKNDKNNIFYDKRVSATGKLNAYTRREVGQMINDIGGHFQMNPGKTTDYFIVGK 174

Query: 693 ---NPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722
              N   KLEKA++L  VKI++E+ FL ++  Y 
Sbjct: 175 LKGNTSHKLEKAEKLPNVKIIHEDDFLDMVAGYE 208


>gi|119718032|ref|YP_924997.1| exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
           JS614]
 gi|119538693|gb|ABL83310.1| Exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
           JS614]
          Length = 405

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIM 709
           +VFTG L  + R +  +   Q G      +++ T +++  D  +   K  KA+  G+ ++
Sbjct: 335 VVFTGELS-VPRDQLIDLAQQAGLK-HGGVNKSTKLVVAADPDSQSGKAAKARSYGIPVV 392

Query: 710 NEEQFLFLLQQ 720
            E  F  +L  
Sbjct: 393 TEAAFARMLAD 403


>gi|301109773|ref|XP_002903967.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262096970|gb|EEY55022.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 510

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           +VFTGTL +  R +A     Q G VV A L++ +  +I G   G  K+E+A++LGV  + 
Sbjct: 4   VVFTGTLCQ-PRKEATAEAEQYGYVVGARLTKTSSFLICGAKVGAKKMEEAEKLGVATLT 62

Query: 711 EEQFLFLLQ 719
           E ++   L 
Sbjct: 63  ELEWREKLA 71


>gi|62390951|ref|YP_226353.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326290|emb|CAF20452.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease
           [Corynebacterium glutamicum ATCC 13032]
          Length = 476

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
                  + + SS +  + +  TG  +  ++    + +   GA++   +++KT I++ G 
Sbjct: 376 VIPDPNPDADPSSILYGQNVTLTGDFEPYEKGALWQRIADQGALIGKNVTKKTTILVAGP 435

Query: 693 NP--GSKLEKAQQLG-----VKIMNEEQF 714
                SK ++A++L      ++I +E+Q 
Sbjct: 436 WATITSKQKRAEELKEKGQDIQIWDEKQL 464


>gi|23308895|ref|NP_601316.2| DNA polymerase III epsilon subunit [Corynebacterium glutamicum ATCC
           13032]
 gi|21324886|dbj|BAB99509.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases
           [Corynebacterium glutamicum ATCC 13032]
          Length = 381

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
                  + + SS +  + +  TG  +  ++    + +   GA++   +++KT I++ G 
Sbjct: 281 VIPDPNPDADPSSILYGQNVTLTGDFEPYEKGALWQRIADQGALIGKNVTKKTTILVAGP 340

Query: 693 NP--GSKLEKAQQLG-----VKIMNEEQF 714
                SK ++A++L      ++I +E+Q 
Sbjct: 341 WATITSKQKRAEELKEKGQDIQIWDEKQL 369


>gi|261252670|ref|ZP_05945243.1| hypothetical protein VIA_002694 [Vibrio orientalis CIP 102891]
 gi|260936061|gb|EEX92050.1| hypothetical protein VIA_002694 [Vibrio orientalis CIP 102891]
          Length = 125

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 9/102 (8%)

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG--TLQKIQRHKAQEYVTQLGAV 676
              I  +            R +K V S ++   + FTG  T +K   ++  E  +     
Sbjct: 18  EEEISQLSDAEAWQIIYSTRAKKVVDSRLQ---VCFTGFGTTEK---NELTEMASANNFN 71

Query: 677 VSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717
           V   +++K D ++ G N G  KLEKA+  GV+++  +QF  L
Sbjct: 72  VVKSVTKKLDFLVGGVNAGPKKLEKAEMQGVQVLTADQFKSL 113


>gi|29374711|ref|NP_813863.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583]
 gi|227555735|ref|ZP_03985782.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
 gi|256761903|ref|ZP_05502483.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|29342169|gb|AAO79935.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583]
 gi|227175140|gb|EEI56112.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
 gi|256683154|gb|EEU22849.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|315573941|gb|EFU86132.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecalis TX0309B]
 gi|315581892|gb|EFU94083.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecalis TX0309A]
          Length = 289

 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTL--QKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           LK+ S      + + +   E    V TG     K  R + +  + Q G  VS+ LS KTD
Sbjct: 175 LKKSSLDSFELDDDTTPFFEGMSFVVTGAFDDSKYNRKQIETLIKQHGGRVSSSLSAKTD 234

Query: 687 IIIVG 691
             I G
Sbjct: 235 YFIQG 239


>gi|237803899|ref|ZP_04591484.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|237805538|ref|ZP_04592242.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331025879|gb|EGI05935.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331026645|gb|EGI06700.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 112

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 18/125 (14%)

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL-I 599
                 + +LE  I  L I  VG   A  LA+ + + +               DWL +  
Sbjct: 1   GAEFAASTTLEGLIDKLHIPLVGPGAALKLAEKFGTLEAIIGA----------DWLDMRQ 50

Query: 600 RVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFT 655
            +P   +  A+++ +F+ +  N     A+EA LK+        +K V    +  +  V T
Sbjct: 51  ALP---EKQAKSVRDFFDDSANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQTWVLT 107

Query: 656 GTLQK 660
           G+L++
Sbjct: 108 GSLER 112


>gi|146322254|ref|YP_001174711.1| hypothetical protein pGdh442_p14 [Lactococcus lactis]
 gi|145968745|gb|ABQ00023.1| hypothetical protein [Lactococcus lactis]
          Length = 98

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 14/88 (15%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSK 697
           +EN+  VFTGTL  + R +AQ  +  L       +++KT  ++ G+ P           K
Sbjct: 2   LENEYFVFTGTLTTMTRKQAQSIIIGLKGHNQNAVTKKTTRLVTGNFPIDLIKGYHHSHK 61

Query: 698 LEKAQQLG-----VKIMNEEQFLFLLQQ 720
           + +A+Q       + IM E++F+  L Q
Sbjct: 62  ISEAKQSKRKGQRIMIMTEKEFIEFLAQ 89


>gi|76574907|gb|ABA47377.1| conserved hypothetical protein [Lactococcus lactis]
          Length = 112

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 14/88 (15%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSK 697
           +EN+  VFTGTL  + R +AQ  +  L       +++KT  ++ G+ P           K
Sbjct: 16  LENEYFVFTGTLTTMTRKQAQSIIIGLKGHNQNAVTKKTTRLVTGNFPIDLIKGYHHSHK 75

Query: 698 LEKAQQLG-----VKIMNEEQFLFLLQQ 720
           + +A+Q       + IM E++F+  L Q
Sbjct: 76  ISEAKQSKRKGQRIMIMTEKEFIEFLAQ 103


>gi|116671124|ref|YP_832057.1| exonuclease, RNase T and DNA polymerase III [Arthrobacter sp. FB24]
 gi|116611233|gb|ABK03957.1| Exonuclease, RNase T and DNA polymerase III [Arthrobacter sp. FB24]
          Length = 337

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 48/108 (44%), Gaps = 24/108 (22%)

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
           +E +      +      +  + +VFTG L  + R +A+    + GA   + ++ +T +++
Sbjct: 224 EEGANPAPNSDAEPGHPLFGQTVVFTGELA-MPRPEAKVLSAEFGAQPESRVTGRTTVLV 282

Query: 690 VGDN-----------PGSKLEKAQ---QLG-----VKIMNEEQFLFLL 718
           VGD             G    KA+   +L      +++++E +FL ++
Sbjct: 283 VGDGFVASDLRSGRLTG----KARRVLELHERGQRIEVLSEGEFLQMV 326


>gi|239631939|ref|ZP_04674970.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239526404|gb|EEQ65405.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 309

 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 3/111 (2%)

Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638
             A+  +      N    +L     +      A+ +       I     L       I  
Sbjct: 156 RLAKNKDFPEPLKNLKLPTLKEYFGISGSSHNALDD---CKTTITVYRHLRDNKLERIAP 212

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
            ++  ++E+   +   TG    I R++ +  +   G  V + +S KTD ++
Sbjct: 213 VDRETTNELRGLRFAITGEFIGISRNEVETMIKLHGGRVISTVSSKTDYLV 263


>gi|213421873|ref|ZP_03354939.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 73

 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186
              ++PK+DG  +T+ Y+ GK   A  RG+G  GED +  IR IP+IP+           
Sbjct: 6   ELWVQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGA-LANAV 64

Query: 187 VRGEVYISK 195
           ++GE+++ +
Sbjct: 65  LQGEIFLQR 73


>gi|296119762|ref|ZP_06838316.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295966916|gb|EFG80187.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 1149

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 7/119 (5%)

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-NKKLVFTGTLQKIQR 663
           G + A+ I       +++     ++ E+   +     N   ++    ++  TGT  ++ R
Sbjct: 282 GVVTAREIKTLESVAKSLNVDAKVVDEMLEQVSESPLNEPLQLSPGDRIALTGT-TEVSR 340

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS---KLEKAQQLGVKIMNEEQFLFLLQ 719
            +     T  G +V   +++ T +++   +PGS   K ++A++L + I+NE +F  LL 
Sbjct: 341 EEWNLRATAAG-LVVGEVAKNTKVLVA-SDPGSRNSKAQRARELNIPIVNETKFAALLN 397


>gi|306824811|ref|ZP_07458155.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304433022|gb|EFM35994.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 93

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 13/85 (15%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSK 697
           +  K +V TG+L+ + R ++  ++   GAVV + +S KTDI+++G         D    K
Sbjct: 3   LTGKNIVITGSLRPLTREESIRFLESKGAVVQSYVSNKTDILVLGHKQLNLFDPDKRSKK 62

Query: 698 LEKAQQLGVKIMNEEQFLFLLQQYN 722
            + A    ++ ++E QF+  L + +
Sbjct: 63  HDAA----LRRISEGQFITFLSEES 83


>gi|220913055|ref|YP_002488364.1| exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
 gi|219859933|gb|ACL40275.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
          Length = 336

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 34/177 (19%)

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNII-AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
                A SLA+ YLS        +    A +     SL  +   G     A+V  +Q+  
Sbjct: 165 ARRNGANSLAELYLSLGLVMPRQHAFDPAVDQLSKQSLTALAG-GSGNGAALVRPFQS-- 221

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680
                     E        +      +  + +VFTG L  I R +A+    + GA   + 
Sbjct: 222 ------GWPDEGLNPEPNPDAEPGHPLYGQTVVFTGQLS-IGRPEAKVRSAEAGARTESR 274

Query: 681 LSRKTDIIIVGDN-----------PGSKLEKAQ---QLG-----VKIMNEEQFLFLL 718
           ++ +T +++VGD             G    KA+   +L      +++++E +FL ++
Sbjct: 275 VTGRTTVLVVGDGFVAADLRSGRLTG----KARRVLELHDRGQAIEVLSEGEFLQMV 327


>gi|297161567|gb|ADI11279.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
           BCW-1]
          Length = 324

 Score = 63.7 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQL 704
           ++  ++ F+G    I R   ++   + G  V+  +SR T +++    +   SK+ KA+  
Sbjct: 243 VQGMRVAFSGD-TSIDRELLEDQAIEAGLHVATSVSRLTSLLVTNDPEAATSKITKARSF 301

Query: 705 GVKIMNEEQFLFLLQQ 720
              +++E  F  LL+ 
Sbjct: 302 DTPVIDEAAFTQLLRD 317


>gi|146279555|ref|YP_001169713.1| transposase [Rhodobacter sphaeroides ATCC 17025]
 gi|145557796|gb|ABP72408.1| Transposase and inactivated derivatives-like protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 282

 Score = 63.7 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 35/165 (21%)

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
           +LA+++         +++  A               G I+A+AI E   +P        L
Sbjct: 132 NLARHFGITFQHHDALHDARAA--------------GLILARAIEETGHDPSE---WIRL 174

Query: 629 LKEVSPSIGRH---EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685
             + +    +    + +    +  + +VFTG L ++ R +A +   Q GA V   +++ T
Sbjct: 175 CNQATRQDRQTLRRDGDGDGPLVGESIVFTGAL-QVPRREAADLAHQAGAAVEPNVTKGT 233

Query: 686 DIIIVGD---------NPGSKLEKAQQL-----GVKIMNEEQFLF 716
            I++VGD         +  SK  KA+ L      ++I+ E  F+ 
Sbjct: 234 TILVVGDQDIDKLAGHDKSSKHRKAEALIEAGQSLRILGEADFMR 278


>gi|154499224|ref|ZP_02037602.1| hypothetical protein BACCAP_03219 [Bacteroides capillosus ATCC
           29799]
 gi|150272064|gb|EDM99290.1| hypothetical protein BACCAP_03219 [Bacteroides capillosus ATCC
           29799]
          Length = 370

 Score = 63.7 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 98/326 (30%), Gaps = 46/326 (14%)

Query: 27  EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-GPLNKIGGEMNLS 85
            I+      Y   +PI+ D+EY  L R   A     P   RS   +  P+      +   
Sbjct: 8   IIARWA---YSVGQPIMTDAEYTVLDRAMKAKYPQNPYCKRSWSSDPCPV-----ALLKE 59

Query: 86  LFKVTHSIPTLSL-------EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138
                   P  SL       +K  +I+ L   I     +      +S+ +    KIDG  
Sbjct: 60  FG-----YP--SLIKAVVLSDKTESIQSLNSLIEVRTAYEAMHAKHSVSY----KIDGWN 108

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198
           I   Y  G+ +    RG      D SA    +P       +     + V  E  +   +F
Sbjct: 109 IQASYYNGELINIQTRGRASDAMDASAVAPLLPKQ-----IPEMGRVLVVMECSVPDAEF 163

Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258
               +           + R A S  L   NP     ++    HG+  ++ +      +  
Sbjct: 164 AWFKET------FGVTSQRGAVSTALA--NPEKCLSHIAIHAHGVRCSNRV-----SDKF 210

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             ++  GF           +  ++         +       DGLV + +  +  +     
Sbjct: 211 DLLKSWGF-QVPMYAWVQNYQELMDQVKAFSDYKEQYGVPTDGLVVEGESTNALRICAWE 269

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDI 344
               R  ++         +  +   I
Sbjct: 270 EPIYRSFVTGYAESYGPHSIAVQCTI 295


>gi|323446745|gb|EGB02801.1| hypothetical protein AURANDRAFT_68555 [Aureococcus anophagefferens]
          Length = 1440

 Score = 63.7 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 668  EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
              V   G  V+  +S KTDI+IVG  PG SK+ KA+   V +M 
Sbjct: 1319 AMVESFGGRVTGAVSGKTDILIVGKEPGMSKVSKARAANVTLMT 1362


>gi|237745763|ref|ZP_04576243.1| predicted protein [Oxalobacter formigenes HOxBLS]
 gi|229377114|gb|EEO27205.1| predicted protein [Oxalobacter formigenes HOxBLS]
          Length = 221

 Score = 63.3 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGV 706
             K ++FTG  +   R + +  V Q+G  V   +S+  DI++ G N G  K+++A  LG+
Sbjct: 142 SGKGVLFTG-FKAADRAELEAMVPQIGWHVRKSVSQTVDIVVAGYNAGPKKVQQAIDLGI 200

Query: 707 KIMNEEQFLFL 717
           ++++E+ F  +
Sbjct: 201 QVVSEKVFREM 211


>gi|221369901|ref|YP_002520997.1| Exonuclease [Rhodobacter sphaeroides KD131]
 gi|221162953|gb|ACM03924.1| Exonuclease [Rhodobacter sphaeroides KD131]
          Length = 293

 Score = 63.3 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 18/127 (14%)

Query: 609 AQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           A A+V  +         E L+K      P+    E + +  +    +VFTG L  + R +
Sbjct: 162 AAALVVLHAETHLNLTFEELIKPARKNHPAAITREGDPTGALSGSVVVFTGALS-MSREE 220

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDN-----PG----SKLEKAQQLG-----VKIMNE 711
           A     ++G  V + ++ KT  ++VGD       G    SK  +A+++      ++I+ E
Sbjct: 221 AAAAAARVGMDVKSSVTNKTTYLVVGDQDLNVLAGHTKSSKHRRAEEMQSAGHPIQIVGE 280

Query: 712 EQFLFLL 718
            +F  L+
Sbjct: 281 TEFRTLV 287


>gi|145296078|ref|YP_001138899.1| hypothetical protein cgR_2000 [Corynebacterium glutamicum R]
 gi|140845998|dbj|BAF54997.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 467

 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
                  + + +S +  + +  TG  +  ++    + +   GA++   +++KT I++ G 
Sbjct: 367 VIPDPNPDADPASILYGQNVTLTGDFEPYEKGALWQQIADQGALIGKNVTKKTTILVAGP 426

Query: 693 NP--GSKLEKAQQLG-----VKIMNEEQF 714
                SK ++A++L      ++I +E+Q 
Sbjct: 427 WATITSKQKRAEELKEKGQDIQIWDEKQL 455


>gi|288923046|ref|ZP_06417199.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f]
 gi|288345596|gb|EFC79972.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f]
          Length = 296

 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 9/78 (11%)

Query: 647 IENKKLVFTGTLQKIQRHK---AQEYVTQLGAVVSAILSRKTDIIIVGDN--PGSKLEKA 701
           ++  ++VFTG      R +     +     G  V+A +SR+T +++  +      K   A
Sbjct: 208 VQGMRVVFTG----PTRTERGALVDRAAAAGLEVTASVSRRTSLLVTNEKHGATRKARAA 263

Query: 702 QQLGVKIMNEEQFLFLLQ 719
            QLG+   +E +FL LL+
Sbjct: 264 AQLGIPTRDEGEFLALLE 281


>gi|299142726|ref|ZP_07035855.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Prevotella
           oris C735]
 gi|298575755|gb|EFI47632.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Prevotella
           oris C735]
          Length = 175

 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 7/107 (6%)

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
           + P       N ++    KK+V TG      +R    + +   GA ++  +S+ T+I+I+
Sbjct: 63  LKPLSVDEVDNPNTPFCGKKIVITGQFDAFPKRDVLGKLLRLYGADINTAISKHTNIVIM 122

Query: 691 GDNPG-SKLEKAQQLG-----VKIMNEEQFLFLLQQYNTTLRIHDDD 731
           G+  G  K EK + L      +++ NE Q L    +YN      ++D
Sbjct: 123 GNAAGPKKKEKIKDLQGQGFPIEVFNEFQLLKTFDEYNIPYEKPNED 169


>gi|257784354|ref|YP_003179571.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
 gi|257472861|gb|ACV50980.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
          Length = 342

 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 7/93 (7%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII--VG 691
                 +   S+++       TG    + +    + +   GA +S  ++ KT+ +I   G
Sbjct: 250 IEKYTDKNTESTKLSGTVFCLTGVPCCMPKSDFLKMLITNGATLSERVTLKTNYLIDCSG 309

Query: 692 DNPGSKLEKAQQL----GVKIMNEEQFLFLLQQ 720
           D    K++ A++     G+KI++E+Q L +L+Q
Sbjct: 310 DETT-KIKTARKYADRTGIKIISEQQMLEMLKQ 341


>gi|290986488|ref|XP_002675956.1| BRCT domain-containing protein [Naegleria gruberi]
 gi|284089555|gb|EFC43212.1| BRCT domain-containing protein [Naegleria gruberi]
          Length = 615

 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-- 693
           + +     S  + +     +GTL K +R   +  + + G   S+ ++  T+ +I  ++  
Sbjct: 1   MVKKSNGKSGVLSSLVFCCSGTLSK-KRSDVESDIKKNGGKTSSSVTNSTNFLITTEHEA 59

Query: 694 ---PGSKLEKAQQLGVKIMNEEQFLFLLQ 719
              P SK+  A+   V I++E+     + 
Sbjct: 60  RGIPTSKVNNAKAKDVPIVSEDFLWKCID 88


>gi|328464330|gb|EGF35747.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus MTCC 5462]
          Length = 47

 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           TD++I GD  GSKL KAQ L V IM+E   L  L+
Sbjct: 12  TDLVIAGDAAGSKLTKAQDLNVPIMDETALLTNLK 46


>gi|312958406|ref|ZP_07772927.1| NAD-dependent DNA ligase [Pseudomonas fluorescens WH6]
 gi|311287470|gb|EFQ66030.1| NAD-dependent DNA ligase [Pseudomonas fluorescens WH6]
          Length = 213

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 14/81 (17%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NP-GSKLEKAQ 702
            VFTG +    R   Q  V + G ++   +S+K   ++VG         +  G+K+ KA 
Sbjct: 131 FVFTGVMAFGPRKDCQALVEERGGLIGGGVSKKVHYLVVGSVGNEQWRHSTYGTKIMKAV 190

Query: 703 QL-----GVKIMNEEQFLFLL 718
           +L      + I+ E  +  +L
Sbjct: 191 ELREAGASIAIVGEGHWQKML 211


>gi|325268586|ref|ZP_08135216.1| NAD-dependent DNA ligase LigA [Prevotella multiformis DSM 16608]
 gi|324989114|gb|EGC21067.1| NAD-dependent DNA ligase LigA [Prevotella multiformis DSM 16608]
          Length = 206

 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
           + P      +N ++    KK+V TG      +R    + + Q GA ++  +S+KTDI+I+
Sbjct: 94  LKPLSAEEVENPNTPFFGKKIVITGQFLAFPKRDVLGKLLKQYGADMNTSISKKTDIVIM 153

Query: 691 GDNPG 695
           G   G
Sbjct: 154 GYAAG 158


>gi|116200486|ref|XP_001226055.1| hypothetical protein CHGG_10788 [Chaetomium globosum CBS 148.51]
 gi|88175502|gb|EAQ82970.1| hypothetical protein CHGG_10788 [Chaetomium globosum CBS 148.51]
          Length = 1409

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----NPGSKLEKAQ 702
           +E   +V +GT         +  V  LGA ++  ++     ++  +     P  K+ KA+
Sbjct: 17  LEGCTIVLSGTFPGATHATIKARVEALGATLATSVTGDATHLVATESDYKKPSPKVTKAK 76

Query: 703 QLGVKIMNEEQFLFLLQQYNT 723
            L + I+  + +L   +Q   
Sbjct: 77  SLDIHIVGLD-WLSACEQNGA 96


>gi|169794726|ref|YP_001712519.1| NAD-dependent DNA ligase [Acinetobacter baumannii AYE]
 gi|169147653|emb|CAM85516.1| hypothetical protein; putative NAD-dependent DNA ligase
           [Acinetobacter baumannii AYE]
          Length = 292

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 14/90 (15%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV--GDNP-------GS 696
           E+  K +  TG   +  + + ++ +   G +    L++  D +++    NP       G 
Sbjct: 203 ELIGKTICLTGASARYSKAEWKKVIESQGGIFKDDLTKTVDYLVICNKGNPHWAHMSYGR 262

Query: 697 KLEKAQQL-----GVKIMNEEQFLFLLQQY 721
           K E+A +       ++I+ E+ F+ +L++ 
Sbjct: 263 KFEQALKWQKDGANIRILTEDDFVKVLEEN 292


>gi|90077296|dbj|BAE88328.1| unnamed protein product [Macaca fascicularis]
          Length = 452

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681
               K   + +E    V TG L+ I+R +A+  + + G  V+  +
Sbjct: 397 KEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNV 441


>gi|258624897|ref|ZP_05719825.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258582895|gb|EEW07716.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 302

 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 16/90 (17%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSK 697
           +   ++ FTG      R   +    + GA V + +S++ D++++G            G K
Sbjct: 214 VSGLQICFTGKFFAGNRKSVESLAKEHGADVRSSVSKQLDLLVIGSMASRDWIHTSHGRK 273

Query: 698 LEKA----QQLG--VKIMNEEQFLFLLQQY 721
           +E A    +Q G   KI+ E+ +  L+ + 
Sbjct: 274 IE-AVINNRQYGSLTKILTEQAWFELIDKQ 302


>gi|51512055|gb|AAU05254.1| NAD-dependent DNA ligase subunit B [Enterobacteria phage T5]
          Length = 260

 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 91/302 (30%), Gaps = 57/302 (18%)

Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484
                 P+ CP C S++                C     C AQ  + +++F ++      
Sbjct: 1   MMKIEIPTQCPSCGSKLDLVNG--------QLFCRNKSNCPAQSSKLIENFCTKMKLK-- 50

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544
                    F         +   +++F L               G    +      +   
Sbjct: 51  --------GFGPKTIEKLELTKISELFYLTEEDLVRAV------GSKVAAKLISELNTKV 96

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
           R +I     + SLGI  +G   A+ L++   S+Q+                         
Sbjct: 97  RGDIDFGSVLGSLGIPLIGEVAAKKLSQNCTSFQDVKA-------------------DG- 136

Query: 605 GDIIAQAIVEFYQNPRNICAVEAL---LKEVSPSIGRHEKNVSSEIE---NKKLVFTGTL 658
                +    +  +P+    +E L     +               +       +  TG+L
Sbjct: 137 --KAGENYKAWLNSPQGKDVIE-LPWKFSKGIKGAKAEVIITDGLVAQPNGITVCITGSL 193

Query: 659 QKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEKAQQLGVKIMNEEQF 714
           Q    R  A  Y+  LG  V   +++    +I  D      S  +KA+  G++I++ ++ 
Sbjct: 194 QDFANRTDATNYLEGLGYTVKKSVTKDVKYLICEDESKRSSSSYKKAETNGIEILSIKEL 253

Query: 715 LF 716
           L 
Sbjct: 254 LE 255


>gi|46401853|ref|YP_006945.1| NAD-dependent DNA ligase, subunit B [Enterobacteria phage T5]
 gi|45775031|gb|AAS77163.1| NAD-dependent DNA ligase, subunit B [Enterobacteria phage T5]
          Length = 259

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 91/301 (30%), Gaps = 57/301 (18%)

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                P+ CP C S++                C     C AQ  + +++F ++       
Sbjct: 1   MKIEIPTQCPSCGSKLDLVNG--------QLFCRNKSNCPAQSSKLIENFCTKMKLK--- 49

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
                   F         +   +++F L               G    +      +   R
Sbjct: 50  -------GFGPKTIEKLELTKISELFYLTEEDLVRAV------GSKVAAKLISELNTKVR 96

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
            +I     + SLGI  +G   A+ L++   S+Q+                          
Sbjct: 97  GDIDFGSVLGSLGIPLIGEVAAKKLSQNCTSFQDVKA-------------------DG-- 135

Query: 606 DIIAQAIVEFYQNPRNICAVEAL---LKEVSPSIGRHEKNVSSEIE---NKKLVFTGTLQ 659
               +    +  +P+    +E L     +               +       +  TG+LQ
Sbjct: 136 -KAGENYKAWLNSPQGKDVIE-LPWKFSKGIKGAKAEVIITDGLVAQPNGITVCITGSLQ 193

Query: 660 KI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEKAQQLGVKIMNEEQFL 715
               R  A  Y+  LG  V   +++    +I  D      S  +KA+  G++I++ ++ L
Sbjct: 194 DFANRTDATNYLEGLGYTVKKSVTKDVKYLICEDESKRSSSSYKKAETNGIEILSIKELL 253

Query: 716 F 716
            
Sbjct: 254 E 254


>gi|254781196|ref|YP_003065609.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040873|gb|ACT57669.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 119

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + +LS  +A  E+  L +   +H   YY+   P+  D  YD +  R DA+   FP+L   
Sbjct: 51  VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF-- 108

Query: 69  EDPNGPLNKIGG 80
            D + P N +G 
Sbjct: 109 -DEDHPWNTVGY 119


>gi|294629410|ref|ZP_06707970.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
 gi|292832743|gb|EFF91092.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
          Length = 653

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 644 SSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GS-KLEK 700
              + +  K+  TG      R +        G  + + +SR T  ++  D   GS K  +
Sbjct: 221 GGPLVQGMKIAVTGETAT-SRAELVARAVAAGLNIMSSVSRHTSALVTNDAASGSAKARR 279

Query: 701 AQQLGVKIMNEEQFLFLLQQ 720
           A   GV I++E  FL LL +
Sbjct: 280 AIAEGVPILDERTFLGLLSE 299


>gi|313608254|gb|EFR84261.1| DNA ligase [Listeria monocytogenes FSL F2-208]
          Length = 66

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 16/42 (38%)

Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59
          +K    L   +  +   YY    P + D+EYD   +    I 
Sbjct: 5  KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIE 46


>gi|326633002|ref|YP_004306591.1| NAD-dependent DNA ligase subunit B [Enterobacteria phage SPC35]
 gi|321272196|gb|ADW80088.1| NAD-dependent DNA ligase subunit B [Enterobacteria phage SPC35]
          Length = 259

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/300 (15%), Positives = 96/300 (32%), Gaps = 55/300 (18%)

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                P+ CP C S++                C     C AQ  + +++F ++       
Sbjct: 1   MKIEIPTQCPSCGSKLDLVNG--------QLFCRNKSNCPAQSSKLIENFCTKMKLK--- 49

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
                   F         +   +++F L               G    +      +   R
Sbjct: 50  -------GFGPKTIEKLELTKISELFYLTEEDLVRAV------GSKVAAKLISELNTKVR 96

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
            +I     + SLGI  +G   A+ L++   S+ +                   ++V    
Sbjct: 97  GDIDFGSVLGSLGIPLIGEVAAKKLSQNCTSFHD-------------------VKVDG-- 135

Query: 606 DIIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEI----ENKKLVFTGTLQK 660
               +    +  +P+    +E            + +  ++ E+        +  TG+LQ 
Sbjct: 136 -KAGENYKAWLNSPQGKDVIELPWKFSTGIKGAKADIIITDELVAQPNGIAVCITGSLQD 194

Query: 661 I-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEKAQQLGVKIMNEEQFLF 716
              R  A  Y+  LG  V   +++    +I  D      S  +KA+  G++I++ ++ L 
Sbjct: 195 FANRTDATNYLESLGYTVKKSVTKDVKYLICEDESKRSSSSYKKAETNGIEILSIKELLE 254


>gi|254780131|ref|YP_003064544.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254039808|gb|ACT56604.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|317120701|gb|ADV02524.1| DNA ligase [Liberibacter phage SC1]
 gi|317120744|gb|ADV02566.1| DNA ligase [Liberibacter phage SC2]
 gi|317120758|gb|ADV02579.1| DNA ligase [Liberibacter phage SC2]
 gi|317120805|gb|ADV02626.1| DNA ligase [Liberibacter phage SC1]
 gi|317120845|gb|ADV02666.1| DNA ligase [Candidatus Liberibacter asiaticus]
          Length = 119

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 9   IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
           + +LS  +A  E+  L +   +H   YY+   P+  D  YD +  R DA+   FP+L   
Sbjct: 51  VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPELF-- 108

Query: 69  EDPNGPLNKIGG 80
            D + P N +G 
Sbjct: 109 -DEDHPWNTVGY 119


>gi|149374650|ref|ZP_01892424.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Marinobacter algicola DG893]
 gi|149361353|gb|EDM49803.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Marinobacter algicola DG893]
          Length = 203

 Score = 61.0 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 16/108 (14%)

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             +  L K  S  I      +    E    +FTGT     R +  E    LG  +   +S
Sbjct: 93  AEIGELAKTTSLPINEPLPEIE--FEGASFLFTGTCAFGTRKQCHEATEALGGAIVKNVS 150

Query: 683 RKTDIIIVG---------DNPGSKLEKA---QQLG--VKIMNEEQFLF 716
           +  + +++G         +  G K+EKA   +  G  + I+ EE +  
Sbjct: 151 KNLNYLVLGTYVTDSWAHETFGRKIEKAVEYRDNGAPIVILTEEHWAE 198


>gi|259507628|ref|ZP_05750528.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
 gi|259164807|gb|EEW49361.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
          Length = 494

 Score = 61.0 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
                  + + +  +  + +  TG  +  ++    + +   G  V   ++RKT I++ G 
Sbjct: 394 VIPDPNPDADPNGLLFGQNVTLTGDFEPYEKGALWQRIADQGGQVGKNVTRKTTILVAGP 453

Query: 693 NP--GSKLEKAQQLG-----VKIMNEEQFLFLL 718
                SK ++A++L      ++I +++Q    L
Sbjct: 454 WATITSKQKRAEELKEKGQDIQIWDDKQLFAAL 486


>gi|25028571|ref|NP_738625.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           efficiens YS-314]
 gi|23493856|dbj|BAC18825.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           efficiens YS-314]
          Length = 569

 Score = 61.0 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
                  + + +  +  + +  TG  +  ++    + +   G  V   ++RKT I++ G 
Sbjct: 469 VIPDPNPDADPNGLLFGQNVTLTGDFEPYEKGALWQRIADQGGQVGKNVTRKTTILVAGP 528

Query: 693 NP--GSKLEKAQQLG-----VKIMNEEQFLFLL 718
                SK ++A++L      ++I +++Q    L
Sbjct: 529 WATITSKQKRAEELKEKGQDIQIWDDKQLFAAL 561


>gi|118616866|ref|YP_905198.1| DNA polymerase [Mycobacterium ulcerans Agy99]
 gi|118568976|gb|ABL03727.1| DNA polymerase [Mycobacterium ulcerans Agy99]
          Length = 500

 Score = 61.0 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLG 705
               L  TG++++ +R + +  + Q G  V   L+R+T +++  D  +   K  KA++ G
Sbjct: 423 AGDVLCLTGSMRR-RRSEWEAELAQRGIEV-GSLTRRTRLLVAADPDSATGKARKARKYG 480

Query: 706 VKIMNEEQFLFLL 718
           + I+NE+    LL
Sbjct: 481 IPIINEDALSRLL 493


>gi|242279609|ref|YP_002991738.1| hypothetical protein Desal_2140 [Desulfovibrio salexigens DSM 2638]
 gi|242122503|gb|ACS80199.1| conserved hypothetical protein [Desulfovibrio salexigens DSM 2638]
          Length = 217

 Score = 60.6 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 34/146 (23%)

Query: 605 GDIIAQAIVEFYQN----PRNICAVEALLKEVSPSIGRHEKNVSSE-------------- 646
           G I+ + + E+  +             L K+V       ++ + ++              
Sbjct: 64  GSILKERLDEYLADGVWTEEEQENFCELAKKVVGMDTEADEPMPTKTGATTLPLSDPLPV 123

Query: 647 --IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NP-------G 695
              E +  V TG      R K  E VT  G  V   +S+K   +++GD  +P       G
Sbjct: 124 MEFEERNFVVTGKFATGVRKKVVEMVTNRGGEVKKTVSKKVHYLVIGDLSSPNWKHSSYG 183

Query: 696 SKLEKAQQL-----GVKIMNEEQFLF 716
            K+EKA  L      + I++EE +  
Sbjct: 184 RKIEKAIDLRDQGSEIYIVSEEHWYA 209


>gi|145636818|ref|ZP_01792483.1| hypothetical protein CGSHiHH_01017 [Haemophilus influenzae PittHH]
 gi|145269899|gb|EDK09837.1| hypothetical protein CGSHiHH_01017 [Haemophilus influenzae PittHH]
          Length = 243

 Score = 60.6 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           + FTG   K+ R   +         V   +++  + +I+GDN G +K+  A  +G  +++
Sbjct: 170 ICFTG-FSKVDREYLESLAEIHDFKVRKTVTKNLNFLIMGDNAGPTKINSAIDVGATLLD 228

Query: 711 EEQFLFLLQ 719
           E +F  +++
Sbjct: 229 ENEFKTMIE 237


>gi|182439459|ref|YP_001827178.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780122|ref|ZP_08239387.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus
           XylebKG-1]
 gi|178467975|dbj|BAG22495.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326660455|gb|EGE45301.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus
           XylebKG-1]
          Length = 341

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 642 NVSSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKL 698
                ++   ++ F+G    I R   ++   + G  V+  +SR T +++  D     SK 
Sbjct: 236 EKEKPLQQGMRVAFSGD-TSIDRELLEDRAIEAGLHVATSVSRLTSLLVTNDPDAATSKT 294

Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720
           +KA+  G  I+ E  F  LL+ 
Sbjct: 295 QKAKSFGTPILEESAFTHLLRD 316


>gi|291300433|ref|YP_003511711.1| exonuclease RNase T and DNA polymerase III [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569653|gb|ADD42618.1| Exonuclease RNase T and DNA polymerase III [Stackebrandtia
           nassauensis DSM 44728]
          Length = 410

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 63/150 (42%), Gaps = 20/150 (13%)

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
           ++   +  A+        + ++   L +V  +              P  + A++ L  + 
Sbjct: 269 HHDYLEALARVALADHHLSAEEEEDLRQVAGI-----------LDLP--LEAID-LAIKA 314

Query: 633 SPSIGRHEKNVSSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           + ++ +        I     +VFTGT+ +  R + ++   + G V    +++K  ++I  
Sbjct: 315 AQALSKDSDTTPLPIAPGDMVVFTGTMPE-SREEWEQRAIEHGFVPHRAVTKKVKLVIAA 373

Query: 692 DN---PGSKLEKAQQLGVKIMNEEQFLFLL 718
           D+    G K +KA+   + IM+ ++F  +L
Sbjct: 374 DSDSLSG-KAKKARGYNIPIMDVDRFREVL 402


>gi|239986791|ref|ZP_04707455.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           11379]
 gi|291443743|ref|ZP_06583133.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
 gi|291346690|gb|EFE73594.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 343

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 642 NVSSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKL 698
                ++   ++ F+G    I R   ++   + G  V+  +SR T +++  D     SK 
Sbjct: 238 EKEKPLKQGMRVAFSGD-TSIDRELLEDRAVEAGLHVATSVSRLTSLLVTNDPDAATSKT 296

Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720
           +KA+  G  I+ E  F  LL+ 
Sbjct: 297 QKAKSFGTPILEESAFTHLLRD 318


>gi|239940309|ref|ZP_04692246.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 341

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 642 NVSSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKL 698
                ++   ++ F+G    I R   ++   + G  V+  +SR T +++  D     SK 
Sbjct: 236 EKEKPLKQGMRVAFSGD-TSIDRELLEDRAVEAGLHVATSVSRLTSLLVTNDPDAATSKT 294

Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720
           +KA+  G  I+ E  F  LL+ 
Sbjct: 295 QKAKSFGTPILEESAFTHLLRD 316


>gi|311899062|dbj|BAJ31470.1| putative DNA polymerase III subunit epsilon [Kitasatospora setae
           KM-6054]
          Length = 329

 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 6/81 (7%)

Query: 644 SSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS---KLE 699
            S + +  ++  TG      R   ++  T+ G  +++ +SR T +++  + P S   K  
Sbjct: 244 GSPLVQGMRVAITGDTAT-DRELLEDRATEAGLHIASSVSRLTSLLVTNE-PTSWSGKAR 301

Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720
           KA++ G  ++ E+ FL LL++
Sbjct: 302 KAREYGTPVVGEDAFLQLLRE 322


>gi|239629265|ref|ZP_04672296.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239528470|gb|EEQ67471.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 94

 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 12/91 (13%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNP------GSKL 698
           +  K+++FTG L+  +R +AQ+  T LGA     + +K DI++VG    P        KL
Sbjct: 4   LRGKRILFTGRLRSFRRFQAQQLATILGAKPVNGIDKKVDILVVGIISKPYDQLLTTQKL 63

Query: 699 EKAQQLGVKIMNEEQFLFL----LQQYNTTL 725
             A+  G+  ++E  F+      L Q   T+
Sbjct: 64  TYARTYGIPKIDELAFISWCQWRLDQLKATI 94


>gi|220929247|ref|YP_002506156.1| NAD-dependent DNA ligase [Clostridium cellulolyticum H10]
 gi|219999575|gb|ACL76176.1| NAD-dependent DNA ligase [Clostridium cellulolyticum H10]
          Length = 247

 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 23/123 (18%)

Query: 616 YQNPRNICA--VEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           + N  NI    +  L   +          + N  +E+      FTG   +++R   Q  V
Sbjct: 126 FNNSVNIDIYEINKLKDIIKIEGLCSVDPDINFCNEL----FCFTGVSSRLRRADIQNIV 181

Query: 671 TQLGAVVSAILSRKTDIIIVGDNP---------GSKLEKAQQL-----GVKIMNEEQFLF 716
             LG      +++ T  +++GDN          G K+E+A  L      + I++E  F  
Sbjct: 182 ESLGGKFKNTVTKDTKYLVIGDNGNPCWAFSCYGRKVEQAVTLRKSGKSILIVHENDFWN 241

Query: 717 LLQ 719
            ++
Sbjct: 242 AVE 244


>gi|302546442|ref|ZP_07298784.1| putative DNA polymerase III epsilon subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302464060|gb|EFL27153.1| putative DNA polymerase III epsilon subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 335

 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGV 706
             ++ F+G    + R   ++   + G  V+  +SR T +++  D     SK  KA+  G 
Sbjct: 250 GMRVAFSGD-TSVDRELLEDRAIEAGLHVATSVSRLTSLLVTNDPDAATSKTAKARSFGT 308

Query: 707 KIMNEEQFLFLL 718
            I++E  F  LL
Sbjct: 309 PIVDEAAFTHLL 320


>gi|288921215|ref|ZP_06415500.1| stress protein [Frankia sp. EUN1f]
 gi|288347369|gb|EFC81661.1| stress protein [Frankia sp. EUN1f]
          Length = 622

 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 7/80 (8%)

Query: 642 NVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIII---VGDNPGSK 697
             +  I+  ++ FTG  +    R + ++     G  V+  +SR+T +++   VG   G K
Sbjct: 195 AEAGLIQGMRIAFTG--ETDTPRDRLEQLAIDAGLAVATSVSRRTSVLVTNHVGSGSG-K 251

Query: 698 LEKAQQLGVKIMNEEQFLFL 717
            + A   GV +++E  FL L
Sbjct: 252 AKAAVAHGVPVIDEATFLRL 271


>gi|307826184|ref|ZP_07656395.1| hypothetical protein MettuDRAFT_4242 [Methylobacter tundripaludum
           SV96]
 gi|307732823|gb|EFO03689.1| hypothetical protein MettuDRAFT_4242 [Methylobacter tundripaludum
           SV96]
          Length = 309

 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 25/102 (24%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK----TDIIIVGD---NP------GSKL 698
            V TG L+   R    + + + G  V   + +     TD +++GD           G K+
Sbjct: 123 FVITGNLKMGARRTVIQAIEEQGGEV---VLKNIRMDTDYLVIGDIGSKAWMHSTHGRKI 179

Query: 699 EKAQQL-----GVKIMNEEQFLF-L---LQQYNTTLRIHDDD 731
           EKA +L     G+ I++E+ F+  L   ++Q + ++   + +
Sbjct: 180 EKAVELREQGHGIAIISEQHFMDSLIPNIEQQSASIDAANTN 221


>gi|300780873|ref|ZP_07090727.1| DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC
           33030]
 gi|300532580|gb|EFK53641.1| DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC
           33030]
          Length = 389

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 41/93 (44%), Gaps = 7/93 (7%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +      + + +S +  + +  TG      + +  + +   G  V   +++KT I++ G+
Sbjct: 289 TIPDPAVDADPNSPLYGQNVTLTGEFDPFDKGQLWDGIANQGGQVGKNVTKKTTILVTGE 348

Query: 693 --NPGSKLEKAQQL-----GVKIMNEEQFLFLL 718
                SK ++A++L      + I   E+ L +L
Sbjct: 349 WATMTSKEKRARELMDKGQDIDIWPAEKLLNVL 381


>gi|153812315|ref|ZP_01964983.1| hypothetical protein RUMOBE_02714 [Ruminococcus obeum ATCC 29174]
 gi|149831477|gb|EDM86564.1| hypothetical protein RUMOBE_02714 [Ruminococcus obeum ATCC 29174]
          Length = 42

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 2/38 (5%)

Query: 682 SRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFL 717
           + KT+ +I  D  +  SK +KA++LG+ I++EE FL L
Sbjct: 2   TGKTNYLINNDVTSNSSKNKKARELGIPILSEEDFLKL 39


>gi|224007511|ref|XP_002292715.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220971577|gb|EED89911.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1233

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 8/53 (15%)

Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSKLEKAQQ 703
           +++ R  A + V  LG  V++ +S KTD ++VG           GSK  KA +
Sbjct: 372 EELARDLASDLVLSLGGKVTSAVSGKTDYLVVGSILEDGREVEEGSKYRKALE 424


>gi|145344042|ref|XP_001416548.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576774|gb|ABO94841.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 597

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 13/88 (14%)

Query: 650 KKLVFTGTLQKIQ--R-------HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLE 699
              V TG    +   R         A++ + + G VV + +S  TD+++VG+ PG SKL 
Sbjct: 403 MTFVLTGIFPDLGGDRIGLMQGKDMAEKLIQRFGGVVRSAVSGATDVLLVGEEPGVSKLS 462

Query: 700 KAQ-QLGVKIMNEEQFLFLLQQYNTTLR 726
            A+ +   K++N E  L ++  +  ++ 
Sbjct: 463 AARTKANCKVLNLEHILDMI--HGRSIE 488


>gi|258510010|ref|YP_003175673.1| predicted ORF [Lactobacillus rhamnosus Lc 705]
 gi|257152851|emb|CAR91822.1| Conserved cytosolic protein [Lactobacillus rhamnosus Lc 705]
          Length = 94

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 12/91 (13%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNP------GSKL 698
           +  K+++FTG L+  +R +AQ+  T LGA     + +  DI++VG    P        KL
Sbjct: 4   LRGKRILFTGRLRSFRRLQAQQLATILGAKPVNGIDKNVDILVVGIISKPYDQLLTTQKL 63

Query: 699 EKAQQLGVKIMNEEQFLFL----LQQYNTTL 725
             A+  G+  ++E  F+      L Q   TL
Sbjct: 64  TYARTYGIPKIDELAFISWCQWRLDQLKATL 94


>gi|59897250|gb|AAX12045.1| DNA ligase [Enterobacteria phage T5]
          Length = 259

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 88/301 (29%), Gaps = 57/301 (18%)

Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
                P+ CP C S++                C     C AQ  + +++F ++       
Sbjct: 1   MKIEIPTQCPSCGSKLDLVNG--------QLFCRNKSNCPAQSSKLIENFCTKMKLK--- 49

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
                   F         +   +++F L               G    +      +   R
Sbjct: 50  -------GFGPKTIEKLELTKISELFYLTEEDLVRAV------GSKVAAKLISELNTKVR 96

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
            +I     + SLGI  +G   A+ L++   S+Q+                          
Sbjct: 97  GDIDFGSVLGSLGIPLIGEVAAKKLSQNCTSFQDVKA-------------------DG-- 135

Query: 606 DIIAQAIVEFYQNPRNICAVEAL---LKEVSPSIGRHEKNVSSEIE---NKKLVFTGTLQ 659
               +    +  +P+    +E L     +               +       +  TG+LQ
Sbjct: 136 -KAGENYKAWLNSPQGKDVIE-LPWKFSKGIKGAKAEVIITDGLVAQPNGITVCITGSLQ 193

Query: 660 KI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK---AQQLGVKIMNEEQFL 715
               R  A  Y+  LG  V   +++    +I  D           A+  G++I++ ++ L
Sbjct: 194 DFANRTDATNYLEGLGYTVKKSVTKDVKCLICEDESKRSSSSYKKAETNGIEILSIKELL 253

Query: 716 F 716
            
Sbjct: 254 E 254


>gi|318605372|emb|CBY26870.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 294

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 58/160 (36%), Gaps = 34/160 (21%)

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIR--VPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
                  ++I        D+  +L +  +   G  IA  +V+                  
Sbjct: 150 KELYKLVKDILADGIITPDEREALKQALIDFTGCDIANGVVDGMA--------------- 194

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +     H  N+   +++  +  TG      R++ +  +   G +V   +++K D +I+G 
Sbjct: 195 TRLPIEHVDNID--LQDSVVCLTGKFLCGSRNQCKTEIEAAGGIVVDTITQKIDYLIIGA 252

Query: 693 ---------NPGSKLEKAQ----QLGVK--IMNEEQFLFL 717
                    + G K+E A     + GV   I++EEQ+   
Sbjct: 253 LSSRDWRFQSYGRKIELAINYRDEKGVPLKIISEEQWKSF 292


>gi|34764272|ref|ZP_00145116.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp.
          vincentii ATCC 49256]
 gi|27885952|gb|EAA23284.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp.
          vincentii ATCC 49256]
          Length = 99

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 24/55 (43%)

Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
          +++  L +++  + + YY  +  +I D E+D      +++   +P L        
Sbjct: 29 EKIVKLREDLDKYRNSYYNDNISLISDYEFDMSLTELESLKEKYPSLRNFSSTTS 83


>gi|227833455|ref|YP_002835162.1| hypothetical protein cauri_1631 [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184446|ref|ZP_06043867.1| hypothetical protein CaurA7_10673 [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454471|gb|ACP33224.1| hypothetical protein cauri_1631 [Corynebacterium aurimucosum ATCC
           700975]
          Length = 461

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 39/95 (41%), Gaps = 10/95 (10%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +      + +    +  + +  TG  +   +      + + G  V   +++KT I++VG 
Sbjct: 361 TIPDPNPDADPEGALFGQNVTLTGDFEPFDKGLLWSKIAERGGQVGKNVTKKTTILVVGQ 420

Query: 693 NP--GSKLEKAQQL-----GVKIMNEEQFLFLLQQ 720
                SK ++A++L      + I   +    LL++
Sbjct: 421 WATKTSKEKRAEELQGKGQDIAIWQTD---KLLEE 452


>gi|38234148|ref|NP_939915.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200410|emb|CAE50098.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           diphtheriae]
          Length = 448

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG- 691
           +      + +    +  + +  +G      + +    +   G ++   +++KT I++ G 
Sbjct: 345 TIPDPNPDADPQGRLFGQSVTLSGDFAPYDKGELWAGIANQGGIIGKNVTKKTTILVCGP 404

Query: 692 -DNPGSKLEKAQQL-----GVKIMNEEQFLFLL 718
            D P SK ++A++L      + +  +E     L
Sbjct: 405 WDKPTSKQKRAEELRAKGQEIDLWTQEDLFAQL 437


>gi|305681196|ref|ZP_07404003.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Corynebacterium matruchotii ATCC 14266]
 gi|305659401|gb|EFM48901.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Corynebacterium matruchotii ATCC 14266]
          Length = 444

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG- 691
           +      + + +  +    +  TG  +   + +  E +  +GA V+  +++KT ++++G 
Sbjct: 335 TIPDPNPDADPNHPLFGHVITLTGDFEPYDKGELWEKMAAVGATVAKNVTKKTTMLVMGP 394

Query: 692 -DNPGSKLEKAQQL 704
            D+  SK ++A++L
Sbjct: 395 WDSVTSKQKRAEEL 408


>gi|225021962|ref|ZP_03711154.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945248|gb|EEG26457.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 456

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG- 691
           +      + + +  +    +  TG  +   + +  E +  +GA V+  +++KT ++++G 
Sbjct: 347 TIPDPNPDADPNHPLFGHVITLTGDFEPYDKGELWEKMAAVGATVAKNVTKKTTMLVMGP 406

Query: 692 -DNPGSKLEKAQQL 704
            D+  SK ++A++L
Sbjct: 407 WDSVTSKQKRAEEL 420


>gi|203284766|ref|YP_002221610.1| Hypothetical cytosolic protein [Lactobacillus rhamnosus HN001]
 gi|229553843|ref|ZP_04442568.1| hypothetical cytosolic protein [Lactobacillus rhamnosus LMS2-1]
 gi|258507432|ref|YP_003170183.1| cytosolic protein [Lactobacillus rhamnosus GG]
 gi|290891682|ref|ZP_06554731.1| hypothetical protein AWRIB429_2121 [Oenococcus oeni AWRIB429]
 gi|199631655|gb|ACH91631.1| Hypothetical cytosolic protein [Lactobacillus rhamnosus HN001]
 gi|229312792|gb|EEN78765.1| hypothetical cytosolic protein [Lactobacillus rhamnosus LMS2-1]
 gi|257147359|emb|CAR86332.1| Conserved cytosolic protein [Lactobacillus rhamnosus GG]
 gi|259648787|dbj|BAI40949.1| hypothetical protein [Lactobacillus rhamnosus GG]
 gi|290478681|gb|EFD87356.1| hypothetical protein AWRIB429_2121 [Oenococcus oeni AWRIB429]
 gi|327383984|gb|AEA55459.1| cytosolic protein [Lactobacillus casei LC2W]
 gi|327387196|gb|AEA58669.1| cytosolic protein [Lactobacillus casei BD-II]
          Length = 94

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 12/91 (13%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNP------GSKL 698
           +  K+++FTG L+  +R +AQ+  T LGA     + +  DI++VG    P        KL
Sbjct: 4   LRGKRILFTGRLRSFRRFQAQQLATILGAKPVNGIDKNVDILVVGIISKPYDQLLTTQKL 63

Query: 699 EKAQQLGVKIMNEEQFLFL----LQQYNTTL 725
             A+  G+  ++E  F+      L Q   TL
Sbjct: 64  TYARTYGIPKIDELAFISWCQWRLDQLKATL 94


>gi|330503081|ref|YP_004379950.1| NAD-dependent DNA ligase [Pseudomonas mendocina NK-01]
 gi|328917367|gb|AEB58198.1| NAD-dependent DNA ligase [Pseudomonas mendocina NK-01]
          Length = 212

 Score = 58.7 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 14/76 (18%)

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQQ 703
           VFTGT+    R   Q+ V + G ++   +++KT  ++VG          + G K+ KA +
Sbjct: 131 VFTGTMAYGPRKACQQLVEERGGLIGGGVNKKTHYLVVGSIGNEQWRHSSYGLKIMKAVE 190

Query: 704 L---G--VKIMNEEQF 714
           L   G  + I+ E+ +
Sbjct: 191 LRESGTPISIVGEDTW 206


>gi|320011539|gb|ADW06389.1| DNA polymerase III, epsilon subunit [Streptomyces flavogriseus ATCC
           33331]
          Length = 346

 Score = 58.7 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 642 NVSSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKL 698
                + +  ++ F+G    I R   ++   + G  V+  +SR T +++  D  +  SK 
Sbjct: 249 ESDKPLMQGMRVAFSGD-TSIDRELLEDRAVEAGLHVATSVSRLTSLLVTNDPDSATSKT 307

Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720
            KA+  G  ++ E  F  LL+ 
Sbjct: 308 VKAKSFGTPVLEESAFTHLLRD 329


>gi|289706337|ref|ZP_06502695.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Micrococcus luteus SK58]
 gi|289556832|gb|EFD50165.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Micrococcus luteus SK58]
          Length = 371

 Score = 58.3 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
               E    +     +    +  + +VFTG +  + R  A+      GA  +  +   T 
Sbjct: 244 RWPDEGVNPLPNPAADPGHPLFGQTVVFTGGI-GMSRQSAKTRAAAQGAQTANRVGAATT 302

Query: 687 IIIVGDN 693
           +++VGD 
Sbjct: 303 MLVVGDG 309


>gi|254386412|ref|ZP_05001717.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
 gi|194345262|gb|EDX26228.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
          Length = 334

 Score = 58.3 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 644 SSEIE-NKKLVFTG--TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKL 698
              ++   ++ F+G  +++   R   ++   + G  ++  +SR T +++  D  +  SK 
Sbjct: 250 GKPLKQGMRIAFSGDTSVE---RELLEDRAVEAGLHIATSVSRLTSLLVTNDPDSATSKT 306

Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720
            KA+  G  +++E  F  LL+ 
Sbjct: 307 VKAKSFGTPVVDEAAFTQLLRD 328


>gi|297198751|ref|ZP_06916148.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
 gi|297147193|gb|EDY59400.2| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
          Length = 327

 Score = 58.3 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 644 SSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPG-SKLEK 700
              ++   ++ F+G    I+R   ++   + G  V+  +SR T +++  D + G SK+ K
Sbjct: 242 GKPLKQGMRIAFSGD-TSIERDLLEDRAIEAGLHVATSISRLTSLLVTNDPDSGTSKVVK 300

Query: 701 AQQLGVKIMNEEQFLFLLQQ 720
           A+Q G  +++E  F  LL+ 
Sbjct: 301 ARQFGTPVVDEAAFGQLLRD 320


>gi|328881521|emb|CCA54760.1| DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC
           10712]
          Length = 330

 Score = 58.3 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 642 NVSSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKL 698
                ++   ++ F+G    + R   ++     G  V+  +SR T +++  D  +  SK 
Sbjct: 244 ETDKPLKQGMRVAFSGD-TSVDRELLEDRTVDAGLHVAGSVSRLTSLLVTNDPDSATSKT 302

Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720
            KA+  G  I++E  +  LL+ 
Sbjct: 303 VKAKSFGTPIVDEAAYTQLLRD 324


>gi|333027027|ref|ZP_08455091.1| putative DNA polymerase III [Streptomyces sp. Tu6071]
 gi|332746879|gb|EGJ77320.1| putative DNA polymerase III [Streptomyces sp. Tu6071]
          Length = 611

 Score = 57.9 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 641 KNVSSEIENKKLVFTG---TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GS 696
           +     ++  K+  TG   T     R +        G  V + +S  T +++  +   GS
Sbjct: 220 EPGGRLVQGMKIALTGQTAT----SRAELVARSVAAGLNVMSSVSGHTSVLVTNEPASGS 275

Query: 697 -KLEKAQQLGVKIMNEEQFLFLL 718
            K  +A   GV +++E  FL LL
Sbjct: 276 AKARRAAAEGVPVIDEHAFLRLL 298


>gi|318060238|ref|ZP_07978961.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
 gi|318076974|ref|ZP_07984306.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
          Length = 647

 Score = 57.9 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 641 KNVSSEIENKKLVFTG---TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GS 696
           +     ++  K+  TG   T     R +        G  V + +S  T +++  +   GS
Sbjct: 216 EPGGRLVQGMKIALTGQTAT----SRAELVARSVAAGLNVMSSVSGHTSVLVTNEPASGS 271

Query: 697 -KLEKAQQLGVKIMNEEQFLFLL 718
            K  +A   GV +++E  FL LL
Sbjct: 272 AKARRAAAEGVPVIDEHAFLRLL 294


>gi|302519143|ref|ZP_07271485.1| DNA polymerase III [Streptomyces sp. SPB78]
 gi|302428038|gb|EFK99853.1| DNA polymerase III [Streptomyces sp. SPB78]
          Length = 664

 Score = 57.9 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 641 KNVSSEIENKKLVFTG---TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GS 696
           +     ++  K+  TG   T     R +        G  V + +S  T +++  +   GS
Sbjct: 273 EPGGRLVQGMKIALTGQTAT----SRAELVARSVAAGLNVMSSVSGHTSVLVTNEPASGS 328

Query: 697 -KLEKAQQLGVKIMNEEQFLFLL 718
            K  +A   GV +++E  FL LL
Sbjct: 329 AKARRAAAEGVPVIDEHAFLRLL 351


>gi|224541263|ref|ZP_03681802.1| hypothetical protein CATMIT_00423 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525812|gb|EEF94917.1| hypothetical protein CATMIT_00423 [Catenibacterium mitsuokai DSM
           15897]
          Length = 102

 Score = 57.9 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 15/84 (17%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV-GDNP--------GSK 697
           +  K  V TG    ++R     Y+   G  V +  +R TD +IV G+          G+K
Sbjct: 16  LTGK-FVVTGLFTSMRRSDVVHYIYTHGGSVLSAPTRATDYLIVGGEKSKTWKYGQYGTK 74

Query: 698 LEKAQQL-----GVKIMNEEQFLF 716
           + K   L      + I++EE F+ 
Sbjct: 75  IRKGLDLREKDEKILIISEEDFMR 98


>gi|309784374|ref|ZP_07679013.1| NAD-dependent DNA ligase OB-fold domain protein [Shigella
           dysenteriae 1617]
 gi|308927881|gb|EFP73349.1| NAD-dependent DNA ligase OB-fold domain protein [Shigella
           dysenteriae 1617]
          Length = 329

 Score = 57.9 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 105/339 (30%), Gaps = 57/339 (16%)

Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQI 346
             +  ++ LP+  DG+V +  +    +          W+++ K+        +  I   +
Sbjct: 33  RNEWWKAKLPFVTDGVVVRAAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAV 90

Query: 347 GRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRA 406
           G++G ++ VA L PV +    +    +                    DI  GD++LV  A
Sbjct: 91  GKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQILVSLA 139

Query: 407 GEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CS 465
           G+ IP++                      +      R           +  C      C 
Sbjct: 140 GQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQ 179

Query: 466 AQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE 525
            Q + RL    S+    ++G+G+       ++               L   Q  +T    
Sbjct: 180 EQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT---- 231

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
              G        L+   N+ R     R++ ++GI       A   A    S+        
Sbjct: 232 --PGIAKSKSAQLWHQFNQARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLLVSTE 286

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
                    W  L   P +G   A+ ++E+ +N +    
Sbjct: 287 QF-------WQQL---PGIGSGRARQVIEWKENAQIKKL 315


>gi|291164964|gb|ADD80993.1| gp102 [Rhodococcus phage ReqiPepy6]
          Length = 542

 Score = 57.9 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 19/46 (41%)

Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
            +  L   I  H   YY+  + I+ D E+D L      +   +P+
Sbjct: 18 DRIQQLRMRILVHSYLYYELDQNILTDREFDTLAYELVDLQKRYPE 63


>gi|291165072|gb|ADD81100.1| gp102 [Rhodococcus phage ReqiPoco6]
          Length = 541

 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
            +  L   I  H   YY+  + I+ D E+DAL      +   +P+
Sbjct: 18 DRIQHLRIRILVHSYLYYEMDQNILTDREFDALAYELVDLQKRYPE 63


>gi|282861901|ref|ZP_06270964.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE]
 gi|282562926|gb|EFB68465.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE]
          Length = 333

 Score = 57.5 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 642 NVSSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKL 698
                + +  ++ F+G    + R   ++   + G  V+  +SR T +++  D     SK 
Sbjct: 236 ESDKPLVQGMRVAFSGD-TSVDRELLEDRAVEAGLHVATSVSRLTSLLVTNDPDAATSKT 294

Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720
            KA+  G  I+ E  F  LL+ 
Sbjct: 295 VKAKSFGTPILEESAFTHLLRD 316


>gi|330977977|gb|EGH77880.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 210

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 12/69 (17%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702
            +FTGT+    R   +E V + G  + + L++KT  +IVG          + G K++KA 
Sbjct: 128 FMFTGTMAYGPRKHCEELVLERGGQICSGLTKKTSFLIVGSLGNDQWLHSSYGLKIKKAV 187

Query: 703 QL---GVKI 708
           +L   GV I
Sbjct: 188 ELREAGVPI 196


>gi|289675448|ref|ZP_06496338.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. syringae FF5]
          Length = 210

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 12/69 (17%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702
            +FTGT+    R   +E V + G  + + L++KT  +IVG          + G K++KA 
Sbjct: 128 FMFTGTMAYGPRKHCEELVLERGGQICSGLTKKTSFLIVGSLGNDQWLHSSYGLKIKKAV 187

Query: 703 QL---GVKI 708
           +L   GV I
Sbjct: 188 ELREAGVPI 196


>gi|306836447|ref|ZP_07469422.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49726]
 gi|304567666|gb|EFM43256.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49726]
          Length = 454

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +      + +    +  + +  TG  +   +    + + + G  V   +++KT +++VG+
Sbjct: 354 TIPDPNPDADPKGALYGQHVTLTGDFEPYDKGLLWQGIAKRGGQVGKNVTKKTTLLVVGE 413

Query: 693 --NPGSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
                SK ++A++L      + + +  Q    L+
Sbjct: 414 WAKKTSKEKRAEELQEKGQDITMWSGAQLFSELE 447


>gi|256851899|ref|ZP_05557287.1| DNA polymerase III [Lactobacillus jensenii 27-2-CHN]
 gi|260661840|ref|ZP_05862750.1| DNA polymerase III [Lactobacillus jensenii 115-3-CHN]
 gi|282931860|ref|ZP_06337341.1| DNA polymerase III [Lactobacillus jensenii 208-1]
 gi|256615857|gb|EEU21046.1| DNA polymerase III [Lactobacillus jensenii 27-2-CHN]
 gi|260547309|gb|EEX23289.1| DNA polymerase III [Lactobacillus jensenii 115-3-CHN]
 gi|281304023|gb|EFA96144.1| DNA polymerase III [Lactobacillus jensenii 208-1]
          Length = 317

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 15/113 (13%)

Query: 619 PRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           P  +  V+  LK    +     +     + ++NK +VF GT+ K    + +  V+ +G  
Sbjct: 203 PEMLNEVKDSLKSCVLTEEIPFEYLIKRNPLKNKTVVFAGTVNK---EELELIVSNMGGQ 259

Query: 677 VSAILSRKTDIIIVGD-----NPGSKLEKAQQL---GVKI--MNEEQFLFLLQ 719
           V   +    D +++GD        S+L+KA++L   G+KI  ++E  FL +L 
Sbjct: 260 VRDHVDSTIDYLVMGDKDFFSKSNSELQKARRLISEGIKISRLSESFFLDMLD 312


>gi|85712349|ref|ZP_01043399.1| hypothetical protein OS145_06549 [Idiomarina baltica OS145]
 gi|85693792|gb|EAQ31740.1| hypothetical protein OS145_06549 [Idiomarina baltica OS145]
          Length = 124

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 652 LVFTGTLQKIQRHK-AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709
           + FTG    I                V A +++K D ++ G N G  K+EKA+  G + +
Sbjct: 48  VCFTGF--GISDKDYLSNLAHDNRFKVVASVTKKLDYLVGGANAGPKKIEKAEAQGAQCL 105

Query: 710 NEEQFLFLLQ 719
           N+++F+ L++
Sbjct: 106 NQQEFIRLVE 115


>gi|326497313|dbj|BAK02241.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 978

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
                 +  T  L   +R +  E + Q G   SA L++K   ++  +  G K   A++ G
Sbjct: 204 PFTGLNICIT-KLDADKRKELMEIIEQNGGQYSANLTKKCTHLVANEPGGDKYLVAKRWG 262

Query: 706 -VKIMNE 711
            ++I+N+
Sbjct: 263 NIQIVNQ 269



 Score = 37.9 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 19/46 (41%)

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           K  S ++       S+  + K   F+ +    +R +  ++V + G 
Sbjct: 554 KATSSAVKSQSSTSSNIFKGKTFCFSNSFSHDRRAEVIDWVREGGG 599


>gi|297561085|ref|YP_003680059.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296845533|gb|ADH67553.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 335

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 44/94 (46%), Gaps = 11/94 (11%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--D 692
                + + +  +  + +  +G L+ + + +    V + G   +  ++RKTD++++G   
Sbjct: 237 PEPSPDADPTGPLYGRTVCVSGDLESMDKPEVWRRVAEAGGRPAKNVTRKTDMLVLGGHG 296

Query: 693 NPGSKLEK---AQ---QLG--VKIMNEEQFLFLL 718
            PG K  K   A+   + G  + ++ E + L LL
Sbjct: 297 GPG-KTAKHLRAEIYRERGQRIDLVTEAELLALL 329


>gi|297205524|ref|ZP_06922920.1| DNA polymerase III [Lactobacillus jensenii JV-V16]
 gi|297150102|gb|EFH30399.1| DNA polymerase III [Lactobacillus jensenii JV-V16]
          Length = 317

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 15/113 (13%)

Query: 619 PRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
           P  +  V+  LK    +     +     + ++NK +VF GT+ K    + +  V+ +G  
Sbjct: 203 PEMLNEVKDSLKSCVLTEEIPFEYLIKRNPLKNKTVVFAGTVNK---EELELIVSNMGGQ 259

Query: 677 VSAILSRKTDIIIVGD-----NPGSKLEKAQQL---GVKI--MNEEQFLFLLQ 719
           V   +    D +++GD        S+L+KA++L   G+KI  ++E  FL +L 
Sbjct: 260 VRDHVDSTIDYLVMGDKDFFSKSNSELQKARRLISEGIKISRLSESFFLDMLD 312


>gi|293392402|ref|ZP_06636724.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291425056|gb|EFE98263.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 293

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 19/87 (21%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLE 699
            +    TG     +R   +E +   G  V   +++K D +++G          + G K+E
Sbjct: 208 GRVFCLTGIFMAGKRSIVEERIKFAGGNVIDNITKKLDYLVIGTLSSRDWKFSSHGRKIE 267

Query: 700 KA--------QQLGVKIMNEEQFLFLL 718
           KA         +L  KI++EE     L
Sbjct: 268 KAINYRDEEGAKL--KIISEENLFEFL 292


>gi|29832981|ref|NP_827615.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
           MA-4680]
 gi|29610102|dbj|BAC74150.1| putative DNA polymerase III epsilon subunit [Streptomyces
           avermitilis MA-4680]
          Length = 325

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 6/83 (7%)

Query: 642 NVSSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS---K 697
                ++   ++ F+G    + R   ++   + G  V+  LSR T +++  D PGS   K
Sbjct: 238 EEGKPLKQGMRVAFSGD-TSVDRELLEDRAVEAGLHVATSLSRLTSLLVTND-PGSGTSK 295

Query: 698 LEKAQQLGVKIMNEEQFLFLLQQ 720
             KA+Q G  +++E  F  LL+ 
Sbjct: 296 TAKARQYGTPVIDEAAFGQLLRD 318


>gi|269956916|ref|YP_003326705.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305597|gb|ACZ31147.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 547

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV-GDNPGSKLEKAQQLGVKIMN 710
           +VFTG      R          G  V   +SRKT  ++  G+  G+K  +A +LG +I++
Sbjct: 397 VVFTGDFP--SRAALTAKAEAAGLRVVGSVSRKTAALVTDGEFIGNKANRAAELGTRIVS 454

Query: 711 EEQFLFLL 718
            + F  LL
Sbjct: 455 PDDFTVLL 462


>gi|145631925|ref|ZP_01787680.1| hypothetical protein CGSHi22421_00747 [Haemophilus influenzae
           R3021]
 gi|145642324|ref|ZP_01797887.1| hypothetical protein CGSHiR3021_00587 [Haemophilus influenzae
           R3021]
 gi|260582516|ref|ZP_05850307.1| NAD-dependent DNA ligase [Haemophilus influenzae NT127]
 gi|144982430|gb|EDJ90000.1| hypothetical protein CGSHi22421_00747 [Haemophilus influenzae
           R3021]
 gi|145272981|gb|EDK12864.1| hypothetical protein CGSHiR3021_00587 [Haemophilus influenzae
           22.4-21]
 gi|260094496|gb|EEW78393.1| NAD-dependent DNA ligase [Haemophilus influenzae NT127]
          Length = 162

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 22/123 (17%)

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRH--------EKNVSSEIENKKLVFTGTLQKIQR 663
           I EF          E L +E+     +          K +   +      FTG      +
Sbjct: 41  IKEFVNFDDAQHYAENLPEEIFIQFDQKLNAIKHIPSKPIQHPL---TFCFTG----FSK 93

Query: 664 HKAQEYV---TQLGAVVSAILSRKTDIIIVGDNP---G-SKLEKAQQLGVKIMNEEQFLF 716
            + Q  +    Q+G      ++ K D +++ +N    G SK  KA+ LGVK++ E QF  
Sbjct: 94  AQKQALIDLTIQVGLRAIQDVTSKCDYLVMCENSKTIGPSKRAKAESLGVKLIFENQFFH 153

Query: 717 LLQ 719
           L++
Sbjct: 154 LIE 156


>gi|119182012|ref|XP_001242164.1| hypothetical protein CIMG_06060 [Coccidioides immitis RS]
          Length = 1406

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----DNPGSKLEKAQ 702
            +NK +V +GT    ++   +  +   G   SA ++     ++      +N G+K ++A 
Sbjct: 5   FKNKTVVLSGTFPGYKQADLKNLIETNGGTFSAKVTDDCTHLVCTQKEFENNGTKNKQAS 64

Query: 703 QL-GVKIMN 710
            + G+ I++
Sbjct: 65  SITGISIVS 73


>gi|323195836|gb|EFZ81008.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
          Length = 380

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 68/426 (15%), Positives = 136/426 (31%), Gaps = 61/426 (14%)

Query: 206 IAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
               R    N R+  +G+L R +       L  F+           +   ++ +    L 
Sbjct: 8   HIQQRMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPERLSQLAKAGFSLT 67

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
                 V+ A+        +     + S LP+  DG+V ++ +    +          W+
Sbjct: 68  KKYTLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPAAQYWRPGQGD--WL 120

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            + K+       ++  I   +G++G +T VA L PV +    +    +            
Sbjct: 121 AAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI-----------G 169

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445
                   DI  GD++LV  AG+ IP++ +++   R                        
Sbjct: 170 SVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV------------------ 211

Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505
            P      +         C  Q + RL    SR A  ++G+G+       ++        
Sbjct: 212 -PPDSHFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRALHQT-------- 262

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
                  +      ++ +I N  GF       ++   N  R     R+I ++    +   
Sbjct: 263 --HRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRWIMAM---DIPLT 317

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
            A   A    S++                     ++P  G+  A  ++++  NP+ I A+
Sbjct: 318 QAALQASGDRSWEQLLMRTEQHWR----------QLPSTGERRAGRVIDWRDNPQ-IKAL 366

Query: 626 EALLKE 631
              L  
Sbjct: 367 SRWLAA 372


>gi|167623238|ref|YP_001673532.1| hypothetical protein Shal_1305 [Shewanella halifaxensis HAW-EB4]
 gi|167353260|gb|ABZ75873.1| hypothetical protein Shal_1305 [Shewanella halifaxensis HAW-EB4]
          Length = 396

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           + FTG    ++R++ +     +G  V   +++   I+ +G+N G SK++KA++ G  +++
Sbjct: 6   ICFTG-FNAVERNELETQAELVGLSVKKNVTKNLHILCIGENAGPSKVDKAREGGSVVID 64

Query: 711 EEQF 714
           + QF
Sbjct: 65  KSQF 68



 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 14/81 (17%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSKLEKAQ 702
             FTG  +   R   +     LGA+ S  +   T  +++G            G K+E A 
Sbjct: 316 FCFTGKFKSGSRKTVESKAQSLGAITSKGVLLSTQFVVIGTLASRDWKYLSHGRKIETAM 375

Query: 703 QLG-----VKIMNEEQFLFLL 718
            L      + +++EEQ+L  +
Sbjct: 376 SLKEKGHEIYVISEEQWLKFI 396


>gi|294677511|ref|YP_003578126.1| hypothetical protein RCAP_rcc01975 [Rhodobacter capsulatus SB 1003]
 gi|294476331|gb|ADE85719.1| conserved hypothetical protein [Rhodobacter capsulatus SB 1003]
          Length = 204

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 17/104 (16%)

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
           L+  +        N+    + ++  FTGT    +R + +  V + GA V   + + TD +
Sbjct: 104 LRSTTLPFTEPAPNID--FDGRRFCFTGTFSFGRRQQCEAAVQRYGA-VCGSMVKNTDYL 160

Query: 689 IVGDNP---------GSKLEKAQQL-----GVKIMNEEQFLFLL 718
           ++GD           G K+E+A +       + I++E+ +   +
Sbjct: 161 VIGDYASAAWKQSSFGRKIERAVEWRAQGASICIVSEQHWRNYI 204


>gi|297516518|ref|ZP_06934904.1| NAD-dependent DNA ligase LigB [Escherichia coli OP50]
          Length = 83

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 9  IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62
            A S  +A++E+S L+Q+I   DD Y++  K  + D  YD L  R       F
Sbjct: 22 CPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75


>gi|258571954|ref|XP_002544780.1| hypothetical protein UREG_04297 [Uncinocarpus reesii 1704]
 gi|237905050|gb|EEP79451.1| hypothetical protein UREG_04297 [Uncinocarpus reesii 1704]
          Length = 661

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII--VG--DNPGSKLEKA 701
             +NK +V +GT         +  V   G   SA ++     +I      +N G+K ++A
Sbjct: 4   IFKNKTIVLSGTFSGHTHASLKSLVETHGGTFSAKVTDDCTHLISSAKEFENNGTKNKQA 63

Query: 702 QQLGVKIMNEEQFLF 716
               V +++ +  L 
Sbjct: 64  ASNNVDVVSVDWLLD 78


>gi|238798089|ref|ZP_04641577.1| hypothetical protein ymoll0001_17550 [Yersinia mollaretii ATCC
           43969]
 gi|238718069|gb|EEQ09897.1| hypothetical protein ymoll0001_17550 [Yersinia mollaretii ATCC
           43969]
          Length = 293

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 34/160 (21%)

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIR--VPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
                  ++I        D+  +L +  +   G  IA  +V+                  
Sbjct: 149 KELYKLVKDILADGVITPDEREALKQALIDFTGCDIANGVVDGMA--------------- 193

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG- 691
           +     H  N+   +++  +  TG      R+K +  +   G VV   +++K D +I+G 
Sbjct: 194 TRLPIEHVDNID--LQDAVVCLTGKFLCGSRNKCKTDIEAAGGVVVDTITQKIDYLIIGT 251

Query: 692 --------DNPGSKLEKAQ----QLGVK--IMNEEQFLFL 717
                    + G K+E A     + GV   I++EEQ+   
Sbjct: 252 LSSRDWRFQSFGRKIELAINYRDEKGVPLKIISEEQWKSF 291


>gi|182682930|ref|YP_001837054.1| NAD-dependent DNA ligase subunit B [Enterobacteria phage EPS7]
 gi|182630642|gb|ACB97574.1| NAD-dependent DNA ligase subunit B [Enterobacteria phage EPS7]
          Length = 129

 Score = 55.6 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 9/119 (7%)

Query: 607 IIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEI----ENKKLVFTGTLQKI 661
              +    +  +P+    +E            + +  ++ ++        +  TG+LQ  
Sbjct: 6   KAGENYKTWLNSPQGKDVIELPWKFSTGIRGAKADIIITDDLVAQPNGITVCITGSLQDF 65

Query: 662 -QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEKAQQLGVKIMNEEQFLF 716
             R  A  Y+  LG  V   +++    +I  D      S  +KA+  G++I++ ++ L 
Sbjct: 66  ANRTDATNYLESLGYTVKKSVTKDVKYLICEDESKRSSSSYKKAETNGIEILSIKELLE 124


>gi|237733311|ref|ZP_04563792.1| 3'-5' exonuclease [Mollicutes bacterium D7]
 gi|229383692|gb|EEO33783.1| 3'-5' exonuclease [Coprobacillus sp. D7]
          Length = 443

 Score = 55.6 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 46/109 (42%), Gaps = 15/109 (13%)

Query: 626 EALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
           + LL  +               ++NK +  TG     +R + ++ +     ++S  +++K
Sbjct: 332 DELLYYIKNFFKPELDQGDLFDVKNKVICLTGNFCFGERSQLEKLIVLKQGIISKSVTKK 391

Query: 685 TDIIIVGDNP---------GSKLEKA-----QQLGVKIMNEEQFLFLLQ 719
            D +++G            G+K  KA     +   +++++E + + +L+
Sbjct: 392 VDYLVLGSKGSAGYKYGKYGAKTNKALTMKSEGHKIELISEARLMEVLK 440


>gi|167755995|ref|ZP_02428122.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402]
 gi|167703987|gb|EDS18566.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402]
          Length = 443

 Score = 55.6 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 46/109 (42%), Gaps = 15/109 (13%)

Query: 626 EALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
           + LL  +               ++NK +  TG     +R + ++ +     ++S  +++K
Sbjct: 332 DELLYYIKNFFKPELDQGDLFDVKNKVICLTGNFCFGERSQLEKLIVLKQGIISKSVTKK 391

Query: 685 TDIIIVGDNP---------GSKLEKA-----QQLGVKIMNEEQFLFLLQ 719
            D +++G            G+K  KA     +   +++++E + + +L+
Sbjct: 392 VDYLVLGSKGSAGYKYGKYGAKTNKALTMKSEGHKIELISEARLMEVLK 440


>gi|300933403|ref|ZP_07148659.1| exonuclease, RNase T and DNA polymerase III [Corynebacterium
           resistens DSM 45100]
          Length = 1144

 Score = 55.6 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 68/177 (38%), Gaps = 24/177 (13%)

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ-AIVEFYQ- 617
                 +A +LA  YLS     Q +      +      ++ +    + + Q ++  +   
Sbjct: 226 DRYRKLLAAALADKYLSASEIKQ-LEESAVRDGISHDDIVAIHE--EFLRQLSVEAWLDG 282

Query: 618 --NPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-KKL---------V-FTGTLQKIQRH 664
                    +  L  ++       E+ +++     + +         V FTG L  + R 
Sbjct: 283 VVTDEEKHTLRTLAGQLGVDPKLTEQLIATPQTGEQTVGLALAPGDRVTFTGQLD-LPRG 341

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS---KLEKAQQLGVKIMNEEQFLFLL 718
           + ++    +G  V   +++K  +++V  NP S   K  +A+ LGV I+ E  F  LL
Sbjct: 342 EWEQRAKSVGLDVGG-VTKK-SVLVVAANPDSTSAKARRARDLGVPIIGERMFAQLL 396


>gi|116326592|ref|YP_796513.1| hypothetical protein LACR_C46 [Lactococcus lactis subsp. cremoris
           SK11]
 gi|76574947|gb|ABA47416.1| conserved hypothetical protein [Lactococcus lactis]
 gi|116108960|gb|ABJ74082.1| hypothetical protein LACR_C46 [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 98

 Score = 55.6 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 14/88 (15%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----D-----NPGSK 697
           +EN+  VFT TL  + R +AQ  +T L       +++ T  ++ G    D      P  K
Sbjct: 2   LENEYFVFTSTLTTMIRKQAQSIITGLKGHNQNSVTKNTTRLVTGYFPIDLIKGYRPSQK 61

Query: 698 L---EKAQQLG--VKIMNEEQFLFLLQQ 720
           L   ++A+Q G  + +M E+QF+  L Q
Sbjct: 62  LSEAKQAEQRGQQIIMMTEKQFIDFLAQ 89


>gi|218659837|ref|ZP_03515767.1| NAD-dependent DNA ligase LigA [Rhizobium etli IE4771]
          Length = 39

 Score = 55.6 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 22/27 (81%)

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLL 718
              GSKL+KA++LGV+ M+E+++L L+
Sbjct: 11  PGAGSKLDKARELGVQTMDEDEWLALI 37


>gi|311896062|dbj|BAJ28470.1| putative exonuclease [Kitasatospora setae KM-6054]
          Length = 617

 Score = 55.6 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GS-KLEKAQQL 704
           ++  K+  TG      R +        G  V + +SR T +++  D   GS K  +A   
Sbjct: 225 VQGVKIAITGE-TAASRAELVARAVAAGLNVMSSVSRHTGVLVTNDTASGSAKARRAAAE 283

Query: 705 GVKIMNEEQFLFLLQQ 720
           G+ +++E  FL LL  
Sbjct: 284 GITVVDEPTFLKLLAD 299


>gi|300858788|ref|YP_003783771.1| hypothetical protein cpfrc_01371 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686242|gb|ADK29164.1| hypothetical protein cpfrc_01371 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206493|gb|ADL10835.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis C231]
 gi|302331048|gb|ADL21242.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276735|gb|ADO26634.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis I19]
          Length = 453

 Score = 55.6 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +      + +    +  + +  TG  +   + K  + + + G  +   +++KT I++ G 
Sbjct: 350 TVPEANLDADPHGRLFQQNVTLTGDFEPFDKGKLWDSIAEQGGTIGKNVTKKTTILVCGP 409

Query: 693 NPG--SKLEKAQQL-----GVKIMNEEQFLFLL 718
                SK ++A++L      ++I   E     L
Sbjct: 410 WASKTSKQKRAEELIDKGQNIQIWTAEDLFAQL 442


>gi|296117576|ref|ZP_06836160.1| DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969307|gb|EFG82548.1| DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 467

 Score = 55.2 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +      + + +S +  + +  TG  +   +      +   G  V   +++KT I+++G+
Sbjct: 367 TIPDPNPDADKNSPLYGQHVTLTGDFEPFDKGVLWNGIAHHGGQVGKNVTKKTTILVLGE 426

Query: 693 --NPGSKLEKAQQLG 705
                SK ++A +L 
Sbjct: 427 WATTTSKEKRADELN 441


>gi|227503316|ref|ZP_03933365.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49725]
 gi|227075819|gb|EEI13782.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49725]
          Length = 470

 Score = 55.2 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +      + +    +  + +  TG  +   +    + + + G  V   +++KT +++VG+
Sbjct: 370 TIPDPNLDADPQGALYGQHVTLTGDFEPYDKGLLWQGIAKRGGQVGKNVTKKTTLLVVGE 429

Query: 693 --NPGSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
                SK ++A++L      + + +  Q    L+
Sbjct: 430 WAKKTSKEKRAEELQEKGQDITMWSGAQLFSELE 463


>gi|33322831|gb|AAQ07151.1|AF496461_1 DNA ligase [Lactobacillus delbrueckii subsp. lactis]
          Length = 128

 Score = 55.2 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 18/141 (12%)

Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417
           ++PV + G  +  A+LHN D +  L           D+R+G  V + +AG++IP++ +++
Sbjct: 2   MDPVRLXGTTVARASLHNPDLLAKL-----------DVRLGXTVKLHKAGDIIPEISEVV 50

Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477
           +++R  D+ P+  P+ CP C   +V            A RC    +C AQ  E + HF S
Sbjct: 51  LSKRPEDSVPYEVPTKCPSCGEDLVHLNEE------VALRCINP-SCPAQVEEGITHFAS 103

Query: 478 RDAFNIEGLGKQQLDFFFKSE 498
           R A NI GLG + +      +
Sbjct: 104 RQAMNIAGLGPKIVKQLIAKD 124


>gi|217974210|ref|YP_002358961.1| BRCT domain-containing protein [Shewanella baltica OS223]
 gi|217499345|gb|ACK47538.1| BRCT domain protein [Shewanella baltica OS223]
          Length = 298

 Score = 55.2 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 23/88 (26%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-----TDIIIVG---------DN 693
             K   FTG  +   R   +     LGA +     +K     T  ++VG          +
Sbjct: 213 TGKGFCFTGKFKTDNRTNIEAKAKSLGANII----KKTPTLATHYVVVGSLSSRDWAYSS 268

Query: 694 PGSKLE-----KAQQLGVKIMNEEQFLF 716
            G+K++     +A+   + I++E+Q+L 
Sbjct: 269 HGTKIQHAKQMQAKGYDIAIISEDQWLA 296


>gi|109289969|ref|YP_655501.1| hypothetical protein MhaA1p34 [Mannheimia phage phiMHaA1]
 gi|254360843|ref|ZP_04976990.1| hypothetical protein MHA_0409 [Mannheimia haemolytica PHL213]
 gi|90110575|gb|ABD90585.1| hypothetical protein [Mannheimia phage phiMhaA1-PHL101]
 gi|90110626|gb|ABD90635.1| hypothetical protein [Mannheimia phage phiMhaA1-BAA410]
 gi|153092317|gb|EDN73386.1| hypothetical protein MHA_0409 [Mannheimia haemolytica PHL213]
          Length = 172

 Score = 55.2 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 11/74 (14%)

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII-------VGDNPGSKLEKAQQLG 705
            FTG  ++ ++++  +        V   ++   D +I       VG     KL KA++LG
Sbjct: 97  CFTG-FKQARKNELIQLAVDNDLRVVQNVTGAVDFLIFDKESKTVGPA---KLAKAEKLG 152

Query: 706 VKIMNEEQFLFLLQ 719
           +KI+++E+FL++L+
Sbjct: 153 IKIIDDEEFLYMLE 166


>gi|239917363|ref|YP_002956921.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Micrococcus luteus NCTC 2665]
 gi|281414154|ref|ZP_06245896.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Micrococcus luteus NCTC 2665]
 gi|239838570|gb|ACS30367.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Micrococcus luteus NCTC 2665]
          Length = 381

 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
               E          +    +  + +VFTG +  + R  A+      GA  +  +   T 
Sbjct: 254 RWPDEGVNPPPNPAADPGHPLFGQTVVFTGGI-GMSRQSAKTRAAAQGAQTANRVGAATT 312

Query: 687 IIIVGDN 693
           +++VGD 
Sbjct: 313 MLVVGDG 319


>gi|145639951|ref|ZP_01795550.1| hypothetical protein CGSHiII_06993 [Haemophilus influenzae PittII]
 gi|145270917|gb|EDK10835.1| hypothetical protein CGSHiII_06993 [Haemophilus influenzae PittII]
 gi|309751665|gb|ADO81649.1| Hypothetical protein R2866_1731 [Haemophilus influenzae R2866]
          Length = 168

 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 22/123 (17%)

Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRH--------EKNVSSEIENKKLVFTGTLQKIQR 663
           I EF          E L +E+     +          K +   +      FTG      +
Sbjct: 47  IKEFVNFDDAQHYAENLPEEIFTQFDQKLNAIKRIPSKPIQHPL---TFCFTG----FSK 99

Query: 664 HKAQEYV---TQLGAVVSAILSRKTDIIIVGDNP---G-SKLEKAQQLGVKIMNEEQFLF 716
            + Q  +    Q+G      ++ K D +++ +N    G SK  KA+ LGVK++ E QF  
Sbjct: 100 AQKQALIDLTIQVGLRAIQDVTSKCDYLVMCENSKTIGPSKRAKAESLGVKLIFENQFFH 159

Query: 717 LLQ 719
           L++
Sbjct: 160 LIE 162


>gi|194467815|ref|ZP_03073801.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23]
 gi|194452668|gb|EDX41566.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23]
          Length = 283

 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 22/103 (21%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSA-----ILSRKTDIIIV 690
            +     ++ +      FTG+ ++   R +  + + + G  V        +   TD +I+
Sbjct: 185 KKDIDVTNNSLSGAHFAFTGSFKEFPDRKEITKLIIKNGGYVPNGHRCTSV---TDFLIL 241

Query: 691 GDNPGS-----KLEK-------AQQLGVKIMNEEQFLFLLQQY 721
           G  P +     K  K       A +    I+   +F+ +L + 
Sbjct: 242 G-KPTARNLTDKANKRRQSMINALKYNTNIITANEFISMLGEK 283


>gi|152987028|ref|YP_001347760.1| NAD-dependent DNA ligase [Pseudomonas aeruginosa PA7]
 gi|150962186|gb|ABR84211.1| NAD-dependent DNA ligase [Pseudomonas aeruginosa PA7]
          Length = 216

 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 14/78 (17%)

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NP-GSKLEKAQQ 703
           VFTG +    R   +E V   G  +++ +S+K   ++VG+        +  G+K+++A +
Sbjct: 133 VFTGVMVYGPRKHCEEIVVNRGGGIASGISKKVHYLVVGEIGNEQWLHSTYGTKIKRAVE 192

Query: 704 L---G--VKIMNEEQFLF 716
           L   G  + I++E+ +  
Sbjct: 193 LREEGHPIAIISEKHWQA 210


>gi|322807500|emb|CBZ05075.1| DNA ligase [Clostridium botulinum H04402 065]
          Length = 117

 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 13/126 (10%)

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           + I ++I       RN   +  L   V+P SI     N+       K   TG L K    
Sbjct: 3   EEIVESI------KRNKVLLVNLFMYVNPISIDEKNANIKRY----KFSITGVLNKDT-S 51

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             +E + +   +V   +++  D ++ GD   + K+  A++   ++++E Q + +L++   
Sbjct: 52  YYEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTRLISERQLVDILKEIKE 111

Query: 724 TLRIHD 729
             ++ +
Sbjct: 112 NNKMKN 117


>gi|303318881|ref|XP_003069440.1| Poly(ADP-ribose) polymerase domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240109126|gb|EER27295.1| Poly(ADP-ribose) polymerase domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 707

 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----DNPGSKLEKAQ 702
            +NK +V +GT    ++   +  +   G   SA ++     ++      +N G+K ++A 
Sbjct: 5   FKNKTVVLSGTFPGYKQADLKNLIETNGGTFSAKVTDDCTHLVCTQKEFENNGTKNKQAS 64

Query: 703 QL-GVKIMN 710
            + G+ I++
Sbjct: 65  SVTGISIVS 73


>gi|289772455|ref|ZP_06531833.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|289702654|gb|EFD70083.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
          Length = 330

 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 7/76 (9%)

Query: 649 NKKLVFTG--TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPG-SKLEKAQQL 704
             ++ F+G  +++   R   ++   + G  V+  LSR T +++  D + G SK+ KA+Q 
Sbjct: 252 GMRVAFSGDTSVE---RDLLEDRAVEAGLHVATSLSRLTSLLVTNDPDSGTSKVVKARQF 308

Query: 705 GVKIMNEEQFLFLLQQ 720
           G  +++E  F  LL  
Sbjct: 309 GTPVVDEAAFGQLLAD 324


>gi|21220316|ref|NP_626095.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)]
 gi|256788562|ref|ZP_05526993.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|6117870|emb|CAB59443.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
           [Streptomyces coelicolor A3(2)]
          Length = 328

 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 7/76 (9%)

Query: 649 NKKLVFTG--TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPG-SKLEKAQQL 704
             ++ F+G  +++   R   ++   + G  V+  LSR T +++  D + G SK+ KA+Q 
Sbjct: 250 GMRVAFSGDTSVE---RDLLEDRAVEAGLHVATSLSRLTSLLVTNDPDSGTSKVVKARQF 306

Query: 705 GVKIMNEEQFLFLLQQ 720
           G  +++E  F  LL  
Sbjct: 307 GTPVVDEAAFGQLLAD 322


>gi|290962326|ref|YP_003493508.1| DNA polymerase III subunit epsilon [Streptomyces scabiei 87.22]
 gi|260651852|emb|CBG74981.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
           [Streptomyces scabiei 87.22]
          Length = 613

 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 644 SSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-DNPGS-KLEK 700
              + +  K+  TG   ++ R +        G  +   +S +T +++      GS KL++
Sbjct: 219 GGPLVQGMKVAITGD-TRVSREELVARSVAAGLNMMTSVSGQTSVVVTNAPGTGSAKLKR 277

Query: 701 AQQLGVKIMNEEQFLFLLQ 719
           A   GV +++E  +L LL+
Sbjct: 278 AADEGVPLVDEPTYLRLLK 296


>gi|126173505|ref|YP_001049654.1| hypothetical protein Sbal_1267 [Shewanella baltica OS155]
 gi|125996710|gb|ABN60785.1| hypothetical protein Sbal_1267 [Shewanella baltica OS155]
          Length = 205

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGV 706
              ++ FTG   K  R   +E  T  G +V   ++R   I+  G N G  K+  A+  G 
Sbjct: 2   AGLEVCFTG-FAKQSRSDLEELATDSGFIVRKAVTRNLHILCAGSNAGPKKVADAKADGA 60

Query: 707 KIMNEEQFLFLL 718
            I+ E  F+ L+
Sbjct: 61  AILLENDFIALV 72


>gi|239932092|ref|ZP_04689045.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291440458|ref|ZP_06579848.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291343353|gb|EFE70309.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
          Length = 327

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 7/76 (9%)

Query: 649 NKKLVFTG--TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPG-SKLEKAQQL 704
             ++ F+G  +++   R   ++  T+ G  V+  LSR T +++  D + G SK  KA+Q 
Sbjct: 248 GMRVAFSGDTSVE---RELLEDRATEAGLHVATSLSRLTSLLVTNDPDSGTSKAVKARQY 304

Query: 705 GVKIMNEEQFLFLLQQ 720
           G  +++E  F  LL+ 
Sbjct: 305 GTPVVDEAAFGQLLED 320


>gi|318057718|ref|ZP_07976441.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
 gi|318079748|ref|ZP_07987080.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
 gi|333028027|ref|ZP_08456091.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
 gi|332747879|gb|EGJ78320.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
          Length = 331

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 644 SSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPG-SKLEK 700
              + +  ++ F+G     +R   ++  T+ G  V+  +SR T +++  D + G SK  +
Sbjct: 244 GQPLVQGMRIAFSGDTST-ERELLEDRATEAGLHVAGSISRLTSLLVTNDPDSGTSKTVR 302

Query: 701 AQQLGVKIMNEEQFLFLLQQYNTTLRIH 728
           A+Q G  +++E  F  LL+     +R+ 
Sbjct: 303 ARQYGTPVIDEAAFGQLLRDVAPAVRVE 330


>gi|302518301|ref|ZP_07270643.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
 gi|302427196|gb|EFK99011.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
          Length = 329

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 644 SSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPG-SKLEK 700
              + +  ++ F+G     +R   ++  T+ G  V+  +SR T +++  D + G SK  +
Sbjct: 242 GQPLVQGMRIAFSGDTST-ERELLEDRATEAGLHVAGSISRLTSLLVTNDPDSGTSKTVR 300

Query: 701 AQQLGVKIMNEEQFLFLLQQYNTTLRIH 728
           A+Q G  +++E  F  LL+     +R+ 
Sbjct: 301 ARQYGTPVIDEAAFGQLLRDVAPAVRVE 328


>gi|149926285|ref|ZP_01914547.1| NAD-dependent DNA ligase (contains BRCT domain type II)-like
           protein [Limnobacter sp. MED105]
 gi|149825103|gb|EDM84315.1| NAD-dependent DNA ligase (contains BRCT domain type II)-like
           protein [Limnobacter sp. MED105]
          Length = 286

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 17/86 (19%)

Query: 647 IENKKLVFTGTLQKIQ--RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------G 695
           IE   LVFTG        R   +E V  LG V+ A ++ KT+ ++VGD           G
Sbjct: 193 IEGSVLVFTGKFGGKTGFRKVIEERVVGLGGVLRASVTTKTNYLVVGDETAVGWITSTYG 252

Query: 696 SKLEKAQQL------GVKIMNEEQFL 715
            K++ A  L       ++++ E+   
Sbjct: 253 RKIQAAMDLRKADAPNLRVLTEQNLR 278


>gi|255325307|ref|ZP_05366413.1| DNA polymerase III epsilon subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|255297872|gb|EET77183.1| DNA polymerase III epsilon subunit [Corynebacterium
           tuberculostearicum SK141]
          Length = 443

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +      + +    +  + +  TG  +   +    + + + G  V+  +++K+ ++IVG+
Sbjct: 343 TIPEPNPDADPEGALYGQHVTLTGDFEPYDKGVLWQGIAERGGQVAKNVTKKSTLLIVGE 402

Query: 693 --NPGSKLEKAQQL 704
                SK ++A++L
Sbjct: 403 WAKKTSKEKRAEEL 416


>gi|311741567|ref|ZP_07715391.1| probable DNA polymerase III epsilon subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303737|gb|EFQ79816.1| probable DNA polymerase III epsilon subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 442

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
           +      + +    +  + +  TG  +   +    + + + G  V+  +++K+ ++IVG+
Sbjct: 342 TIPEPNPDADPEGALYGQHVTLTGDFEPYDKGVLWQGIAERGGQVAKNVTKKSTLLIVGE 401

Query: 693 --NPGSKLEKAQQL 704
                SK ++A++L
Sbjct: 402 WAKKTSKEKRAEEL 415


>gi|167567824|ref|ZP_02360740.1| Transposase and inactivated derivatives-like protein [Burkholderia
           oklahomensis EO147]
          Length = 248

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 15/92 (16%)

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-----PG- 695
           N    +  +++VFTGTL  ++R +A       G  V A + + T +++VGD       G 
Sbjct: 155 NPDGVLAGEEMVFTGTLTLLRR-EAAALAAMAGCDVVASVRKTTTLLVVGDQDIQRLAGH 213

Query: 696 --S-KLEKAQQL---G--VKIMNEEQFLFLLQ 719
             S K +KA++L   G  ++I+ E  FL ++ 
Sbjct: 214 EKSLKHQKAEELIAKGQAIRILKESDFLRIVN 245


>gi|32396683|gb|AAP49298.1| NAD-dependent DNA ligase [Bacillus coagulans]
          Length = 121

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 52/121 (42%), Positives = 76/121 (62%), Gaps = 1/121 (0%)

Query: 214 ANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA+G LR+L+P    +R L+ FV+GL    E+  +   E L  ++ LGF VN   
Sbjct: 1   ANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGIESHSEALDYLQALGFKVNPER 60

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           R+      ++++ NE    R  LPY+IDG+V KVD F+ Q++LG  A+SPRW I++KF  
Sbjct: 61  RRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQRELGATAKSPRWAIAYKFPA 120

Query: 333 K 333
           +
Sbjct: 121 E 121


>gi|291450661|ref|ZP_06590051.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
 gi|291353610|gb|EFE80512.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 345

 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPG-SKL 698
           +     ++  ++ F+G     +R   ++  T+ G  V+  LSR T +++  D + G SK 
Sbjct: 258 EPGGRLVQGMRIAFSGDTST-ERDLLEDRATEAGLHVATSLSRLTSLLVTNDPDSGTSKT 316

Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720
            KA+Q G  +++E  F  LLQ 
Sbjct: 317 VKARQFGTPVVDEAAFGQLLQD 338


>gi|239978772|ref|ZP_04701296.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 324

 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPG-SKL 698
           +     ++  ++ F+G     +R   ++  T+ G  V+  LSR T +++  D + G SK 
Sbjct: 237 EPGGRLVQGMRIAFSGDTST-ERDLLEDRATEAGLHVATSLSRLTSLLVTNDPDSGTSKT 295

Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720
            KA+Q G  +++E  F  LLQ 
Sbjct: 296 VKARQFGTPVVDEAAFGQLLQD 317


>gi|261492599|ref|ZP_05989152.1| hypothetical protein COK_1023 [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261494901|ref|ZP_05991373.1| hypothetical protein COI_0690 [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309437|gb|EEY10668.1| hypothetical protein COI_0690 [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261311758|gb|EEY12908.1| hypothetical protein COK_1023 [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 172

 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 11/74 (14%)

Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII-------VGDNPGSKLEKAQQLG 705
            FTG  ++ ++++  +        V   ++   D +I       VG     KL KA++LG
Sbjct: 97  CFTG-FKQARKNELIQLAVDNDLRVVQNVTGAVDFLIFDKESKTVGPA---KLAKAEKLG 152

Query: 706 VKIMNEEQFLFLLQ 719
           +KI+N+E+FL++L+
Sbjct: 153 IKIINDEEFLYMLE 166


>gi|300812825|ref|ZP_07093220.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496161|gb|EFK31288.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 54

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 669 YVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
            +   G  V+  +S  TD ++ G+  +   K +KA + G  ++  E  + LLQ+
Sbjct: 1   MIQSHGGKVTGSVSGVTDYLLKGELDHVTGKCKKAVEKGTAVIGYEDLMLLLQK 54


>gi|227504725|ref|ZP_03934774.1| DNA polymerase III epsilon subunit [Corynebacterium striatum ATCC
           6940]
 gi|227198735|gb|EEI78783.1| DNA polymerase III epsilon subunit [Corynebacterium striatum ATCC
           6940]
          Length = 451

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 12/79 (15%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-----RHKAQEYVTQLGAVVSAILSRKTDI 687
           +      + +    +  + +  TG  +        R      + + G  V   +++KT I
Sbjct: 351 TIPDPNLDADPEGALFGQNVTLTGEFEPFDKGLLWRS-----IAERGGQVGKNVTKKTTI 405

Query: 688 IIVGDNP--GSKLEKAQQL 704
           +++G+     SK ++A++L
Sbjct: 406 LVLGEWATKTSKEKRAEEL 424


>gi|239944923|ref|ZP_04696860.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998]
 gi|239991387|ref|ZP_04712051.1| DNA polymerase III [Streptomyces roseosporus NRRL 11379]
 gi|291448385|ref|ZP_06587775.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351332|gb|EFE78236.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 641

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 642 NVSSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GS-KL 698
                + +  K+  TG      R +        G  +   +SR T +++  +   GS K+
Sbjct: 220 ASDGPLRQGMKVAITGE-TAHARAELVGRAVAAGLNMMTSVSRHTSVLVTNEPASGSAKV 278

Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720
            +A   GV +++E  FL +L  
Sbjct: 279 RRALTEGVPVIDEHTFLRMLAD 300


>gi|207110372|ref|ZP_03244534.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_CA4C1]
          Length = 108

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 11/119 (9%)

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
              R      +DG+V  V+E  +QK+LG   +SP++  ++KF   +  T+++ +  Q+GR
Sbjct: 1   MREREGFFALLDGMVIVVNELGIQKELGYTQKSPKFACAYKFPALEKHTKIIGVINQVGR 60

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407
           +G +TPVA LEP+ I GA++T ATLHN   I+            ++I + DRV+V R+G
Sbjct: 61  SGAITPVALLEPIEIAGAMVTKATLHNYSEIEK-----------KNIMLNDRVVVIRSG 108


>gi|297157618|gb|ADI07330.1| NAD-dependent DNA ligase LigA [Streptomyces bingchenggensis BCW-1]
          Length = 858

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-PGSKLEKAQQLGVKIMNEEQFL 715
            L       A+  +  LGA VS  +S +TD++    + PG K+  A   G+ I +E+   
Sbjct: 6   KLPHTT---AKAGLEALGARVSGSVSDRTDLVFAAHDVPGRKIGAASTRGIPIYDEKALR 62

Query: 716 FLLQ 719
            +L+
Sbjct: 63  AVLK 66


>gi|84488969|ref|YP_447201.1| 3'-5' exonuclease [Methanosphaera stadtmanae DSM 3091]
 gi|84372288|gb|ABC56558.1| predicted 3'-5' exonuclease [Methanosphaera stadtmanae DSM 3091]
          Length = 445

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 16/106 (15%)

Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684
           V  +  E+   I    +++   +E K    TG  +   + K    + + G +    +S K
Sbjct: 337 VSKMFLELLSPIKTTVESLD--LEGKTYCLTGDFKHGNKAKIVSILEKRGLIKKNCVSYK 394

Query: 685 TDIIIVGD---------NPGSKLEKAQQL-----GVKIMNEEQFLF 716
            D + VGD         N G K+ KAQQ+      +KI++E+    
Sbjct: 395 LDYLFVGDYGSPAWKYGNIGGKIVKAQQIIDKGAKIKIISEKNLFN 440


>gi|332084531|gb|EGI89726.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           dysenteriae 155-74]
          Length = 355

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 58/383 (15%), Positives = 114/383 (29%), Gaps = 58/383 (15%)

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
                    +   + L+++   GF +     +A         +   +  ++ LP+  DG+
Sbjct: 16  FVWAWPDGPQLMTDRLKELATAGFTLTQTYTRAVKNADE-VAHVRNEWWKARLPFVTDGV 74

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V +  +               W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 75  VVRAAKEPESHHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 132

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +    +    +                    DI  GD++LV  AG+ IP++         
Sbjct: 133 LDDKKVQRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------- 173

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAF 481
                        +      R           +  C      C  Q + RL    S+   
Sbjct: 174 ------------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVL 221

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
            ++G+G+       ++               L   Q  +T       G        L+  
Sbjct: 222 GLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQ 271

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
            N  R     R++ ++GI       A   A    S+                 W  L   
Sbjct: 272 FNLARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL--- 318

Query: 602 PLVGDIIAQAIVEFYQNPRNICA 624
           P  G   A+ ++E+ +N +    
Sbjct: 319 PGTGSGRARQVIEWKENAQIKKL 341


>gi|114048081|ref|YP_738631.1| NAD-dependent DNA ligase [Shewanella sp. MR-7]
 gi|113889523|gb|ABI43574.1| NAD-dependent DNA ligase (contains BRCT domain type II)-like
           protein [Shewanella sp. MR-7]
          Length = 298

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 23/84 (27%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-----TDIIIVG---------DNPGSK 697
             FTG  ++++R + ++    LGAV++    +K     TD ++VG          + G K
Sbjct: 217 FCFTGKFKQLKRVQLEDKAKSLGAVIA----KKIPTLSTDYVVVGSLSSRDWLYSSHGLK 272

Query: 698 LEKAQQLG-----VKIMNEEQFLF 716
           ++ A+++      + I++E+Q+L 
Sbjct: 273 IQHAKKMQESGHHISIISEDQWLA 296


>gi|320168366|gb|EFW45265.1| DNA ligase [Capsaspora owczarzaki ATCC 30864]
          Length = 881

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 8/90 (8%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694
           +        +  +       TG +  + R    + + + G  V+  ++     +I     
Sbjct: 153 NEDEDGNPSTRALAGMTFCLTGAMS-VTRKVMTKLIQRHGGRVANTVTGAVTHLISAVEG 211

Query: 695 GSKLEKAQQL---GVKIMNEEQFL-FLLQQ 720
            SK ++A  L    V I +E +F+  L+ +
Sbjct: 212 TSKHDRA--LLRDDVAIESE-EFIHDLISK 238


>gi|117921128|ref|YP_870320.1| NAD-dependent DNA ligase [Shewanella sp. ANA-3]
 gi|117613460|gb|ABK48914.1| NAD-dependent DNA ligase (contains BRCT domain type II)-like
           protein [Shewanella sp. ANA-3]
          Length = 298

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 23/84 (27%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-----TDIIIVG---------DNPGSK 697
             FTG  ++++R + ++    LGAV++    +K     TD ++VG          + G K
Sbjct: 217 FCFTGKFKQLKRVQLEDKAKSLGAVIA----KKIPTLSTDYVVVGSLSSRDWLYSSHGLK 272

Query: 698 LEKAQQLG-----VKIMNEEQFLF 716
           ++ A+++      + I++E+Q+L 
Sbjct: 273 IQHAKKMQESGHHISIISEDQWLA 296


>gi|302554712|ref|ZP_07307054.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
 gi|302472330|gb|EFL35423.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
          Length = 623

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 644 SSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEK 700
              +    K+  TG   ++ R +        G  +   +S +T +++  D      KL +
Sbjct: 232 GGPLTQGMKVAITGD-TQVSREELVARSVAAGLNMMTSVSGQTSVVVTNDPSTASGKLRR 290

Query: 701 AQQLGVKIMNEEQFLFLLQ 719
           A   GV +++E  +L LL+
Sbjct: 291 AADEGVPLLDEPMYLRLLE 309


>gi|213965286|ref|ZP_03393483.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           amycolatum SK46]
 gi|213952138|gb|EEB63523.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           amycolatum SK46]
          Length = 545

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG- 691
           +      + + S  +  +++  TG      +    + +   GA ++  +++KT I++ G 
Sbjct: 404 TIPDPNPDADPSGLLYQQRVTLTGDFAPYDKGFLWDKIAFAGANINKGVTKKTTILVAGP 463

Query: 692 -DNPGSKLEKAQQLG-----VKIMNEEQF 714
            D+  SK ++A+QL      ++I  E++ 
Sbjct: 464 WDSVTSKEKRARQLQAEGQEIQIWTEKEL 492


>gi|289679599|ref|ZP_06500489.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
           FF5]
          Length = 109

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/120 (35%), Positives = 62/120 (51%), Gaps = 17/120 (14%)

Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427
           + NATLHN D +  L            + +GD V+++RAG+VIP+VV ++   R  +A+ 
Sbjct: 1   VANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARA 49

Query: 428 FSFPSFCPICQSRV------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481
              P  CP+C S V       R    +T    A +RC G LAC AQ  + + H+VSR A 
Sbjct: 50  VQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAL 109


>gi|123479162|ref|XP_001322740.1| differentiation specific element binding protein [Trichomonas
           vaginalis G3]
 gi|121905592|gb|EAY10517.1| differentiation specific element binding protein, putative
           [Trichomonas vaginalis G3]
          Length = 694

 Score = 53.3 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 10/88 (11%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG------ 691
                    +   ++  +GTL    R + ++ +T  G  + A +    DI + G      
Sbjct: 64  PVPSPKPGSLTGIRICASGTLPHFTRAEVRDLITACGGTLQAAIKDNVDIFLRGCLNVSQ 123

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           D    KL  A + G+ +++EE  L +L 
Sbjct: 124 D----KLNSALKKGISVIDEEGLLAMLA 147


>gi|320179984|gb|EFW54926.1| DNA ligase , LigB [Shigella boydii ATCC 9905]
 gi|332084828|gb|EGI90011.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
           boydii 5216-82]
          Length = 355

 Score = 53.3 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 58/383 (15%), Positives = 115/383 (30%), Gaps = 58/383 (15%)

Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302
                    +   + L+++   GF +     +A         +   +  ++ LP+  DG+
Sbjct: 16  FVWAWPDGPQLMTDRLKELATAGFTLTQTYTRAVKNADE-VAHVRNEWWKARLPFVTDGV 74

Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362
           V +  +    +          W+++ K+        +  I   +G++G ++ VA L PV 
Sbjct: 75  VVRAAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 132

Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422
           +    +    +                    DI  GD++LV  AG+ IP++         
Sbjct: 133 LDDKKVQRVNI-----------GSVRRWQEWDIAPGDQILVSLAGQGIPRID-------- 173

Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CSAQQLERLKHFVSRDAF 481
                        +      R           +  C      C  Q + RL    S+   
Sbjct: 174 ------------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVL 221

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541
            ++G+G+       ++               L   Q  +T       G        L+  
Sbjct: 222 GLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT------PGIAKSKSAQLWHQ 271

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
            N  R     R++ ++GI       A   A    S+                 W  L   
Sbjct: 272 FNLARKQPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTEQF-------WQQL--- 318

Query: 602 PLVGDIIAQAIVEFYQNPRNICA 624
           P  G   A+ ++E+ +N +    
Sbjct: 319 PGTGSGRARQVIEWKENAQIKKL 341


>gi|227505453|ref|ZP_03935502.1| possible exonuclease, RNase T and DNA polymerase III
           [Corynebacterium striatum ATCC 6940]
 gi|227197946|gb|EEI77994.1| possible exonuclease, RNase T and DNA polymerase III
           [Corynebacterium striatum ATCC 6940]
          Length = 1118

 Score = 53.3 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLG 705
              ++ FTG    + R + +     +G  V   +++K+ +++    D+   K  KA++ G
Sbjct: 326 AGDRVTFTGQFD-LPREEWERRAMAVGLSVGG-VTKKSVLLVAANPDSMSGKARKAREYG 383

Query: 706 VKIMNEEQFLFLLQQYNTTLRIHDDD 731
           V I+ E  F  LL   +   ++ + D
Sbjct: 384 VPIIGETAFARLLSNMSGGGQLVEQD 409


>gi|32396688|gb|AAP49300.1| NAD-dependent DNA ligase [Bacillus circulans]
          Length = 121

 Score = 53.3 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/121 (41%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 214 ANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA+G LR+L+P    +R+L+ FV+ L    E+        L  ++ LGF VN   
Sbjct: 1   ANPRNAAAGSLRQLDPKIAASRHLDLFVYSLANAEELGIDSHSAALDYLQTLGFKVNPER 60

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           R+      ++ + +E    RS LPYDIDG+V KVD F  Q+ +G  A+SPRW I++KF  
Sbjct: 61  RRCANIDEVIRFVSEWHEKRSHLPYDIDGIVIKVDSFEQQESVGATAKSPRWAIAYKFPA 120

Query: 333 K 333
           +
Sbjct: 121 E 121


>gi|302561385|ref|ZP_07313727.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302479003|gb|EFL42096.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 314

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGV 706
             ++ F+G     +R   ++   + G  V+  LSR T +++    ++  SK+ KA+Q G 
Sbjct: 235 GMRVAFSGDTST-ERDLLEDRAAEAGLHVATSLSRLTSLLVTNDPESGTSKVVKARQYGT 293

Query: 707 KIMNEEQFLFLLQQYNTT 724
            +++E  F  LL      
Sbjct: 294 PVVDEAAFGQLLGDVEAA 311


>gi|85814043|emb|CAH05238.1| DNA polymerase III, epsilon subunit [Micromonospora echinospora]
          Length = 386

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLG 705
            N  +VFTG+++   R + +E     G  V   ++RKT + +  D  +   K ++A++ G
Sbjct: 308 ANDVVVFTGSMEP-ARDQWEEQARSAGLQVGKSVTRKTRLTVAADPDSMSGKAKQARRYG 366

Query: 706 VKIMNEEQFLFLLQQ 720
           + I++   +  LL  
Sbjct: 367 IPIVHPSGYQRLLAD 381


>gi|88799180|ref|ZP_01114760.1| NAD-dependent DNA ligase (contains BRCT domain type II)-like
           protein [Reinekea sp. MED297]
 gi|88778163|gb|EAR09358.1| NAD-dependent DNA ligase (contains BRCT domain type II)-like
           protein [Reinekea sp. MED297]
          Length = 296

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 52/151 (34%), Gaps = 35/151 (23%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
            + + + +  +++    L  +  +    AQ   E+                   +     
Sbjct: 158 EKILEDGVISSDESNELLTTLNDIS---AQKFWEYGAV------------GGLTTAFLKN 202

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP------ 694
             +    + + + FTG+     R +       +GA++S  +++  D +++G+        
Sbjct: 203 DELPYSFKGRSVCFTGSFVSGTRRRHATIAESIGALISKSVTKNLDYLVIGNVASRDWIQ 262

Query: 695 ---GSKLEK--------AQQLGVKIMNEEQF 714
              G K+E         A+    +I+ E+ +
Sbjct: 263 KSYGRKIETVIKNRNEGAK---TRILTEKDW 290


>gi|167623231|ref|YP_001673525.1| hypothetical protein Shal_1298 [Shewanella halifaxensis HAW-EB4]
 gi|167353253|gb|ABZ75866.1| hypothetical protein Shal_1298 [Shewanella halifaxensis HAW-EB4]
          Length = 396

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 14/79 (17%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSKLEKA- 701
             FTG  +   R   +     LGA+ S  +   T  +++G            G K+EKA 
Sbjct: 316 FCFTGKFKTGSRKTVESKAQSLGAITSKDVLLSTQFLVIGTLASRDWKYLSHGRKIEKAM 375

Query: 702 --QQLG--VKIMNEEQFLF 716
             ++ G  + +++EEQ+L 
Sbjct: 376 LLKEKGHEIYVISEEQWLA 394



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           + FTG    ++R++ +     +G  V   ++    I+ VGDN G SK++K+ + G  I++
Sbjct: 6   ICFTG-FNAVERNELETLGELVGLSVKKNVTNSLHILCVGDNAGPSKIDKSLEGGSVIID 64

Query: 711 EEQF 714
           + QF
Sbjct: 65  KPQF 68


>gi|302533719|ref|ZP_07286061.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
 gi|302442614|gb|EFL14430.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
          Length = 332

 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGV 706
             ++ F+G    + R   ++   + G  ++  +SR T +++  D  +  SK  +A+  G 
Sbjct: 253 GMRIAFSGD-TSVDRELLEDRAVEAGLHIATSVSRLTSLLVTNDPDSSTSKTVRAKSYGT 311

Query: 707 KIMNEEQFLFLLQQ 720
            I++E  F  LL+ 
Sbjct: 312 PIVDEAAFTQLLRD 325


>gi|302550499|ref|ZP_07302841.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
 gi|302468117|gb|EFL31210.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
          Length = 330

 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPG-SKLEKAQQLGV 706
             ++ F+G     +R   ++  T  G  V+  LSR T +++  D + G SK+ KA+Q G 
Sbjct: 251 GMRVAFSGDTST-ERELLEDRATDAGLHVATSLSRLTSLLVTNDPDSGTSKVVKARQFGT 309

Query: 707 KIMNEEQFLFLLQQ 720
            +++E  F  LL  
Sbjct: 310 PVVDEAAFGQLLAD 323


>gi|157413924|ref|YP_001484790.1| hypothetical protein P9215_15911 [Prochlorococcus marinus str. MIT
           9215]
 gi|157388499|gb|ABV51204.1| Hypothetical protein P9215_15911 [Prochlorococcus marinus str. MIT
           9215]
          Length = 249

 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/300 (18%), Positives = 88/300 (29%), Gaps = 71/300 (23%)

Query: 36  YQYSKPIILDSEYDALKRRCDAIAHAF----PDLARSEDPNGPLNKIGGEMNLSLFKVTH 91
           Y+  + II D  +         +   F    P+       N         +   L K  +
Sbjct: 16  YRIGEGIISDDAF-------KQLEKLFMHVDPESDYFNQKNS-------RVLPRLAKENY 61

Query: 92  SIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151
                SL                              +++PKIDG  I IRY  GKF  A
Sbjct: 62  KEFLGSL------------------------LTKTRLSIQPKIDGCAIAIRYINGKFNKA 97

Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRK 211
                  +G DVS+ I+ I  +P               +    K DF    + + A  + 
Sbjct: 98  IT----KTGFDVSSKIKQIKNVP---------------DCIPIKRDFQIRGE-LYATNQV 137

Query: 212 PYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
              + R          +       L+F    +          QYE L  ++  GF   + 
Sbjct: 138 AGISKR---ITRKYLNDKKGFRESLSFCCFQILNGR----LNQYETLNYLKKCGFSTPDS 190

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR-WMISHKF 330
               N    I  Y       +    Y  +G+V K++   LQ    +     + W  + + 
Sbjct: 191 YFT-NHTSEIQIYKKNWLERKIFTKYPTNGIVIKINSRKLQLLREKSLTKNKEWQYAIEK 249


>gi|88855710|ref|ZP_01130373.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
 gi|88815034|gb|EAR24893.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
          Length = 417

 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS---KLEKAQQLGVKI 708
           +V TG + +  R + +  +   G V    ++++  +++   +P S   K  KA+  G+ +
Sbjct: 348 IVLTGEMSR-TRDEIEATIVGFGFVPWRAVTKRVRLLVA-ADPDSLSGKARKARDYGIPV 405

Query: 709 MNEEQFLFLL 718
           ++E   + LL
Sbjct: 406 VDEAGLVRLL 415


>gi|254526714|ref|ZP_05138766.1| NAD-dependent DNA ligase N-terminal domain protein [Prochlorococcus
           marinus str. MIT 9202]
 gi|221538138|gb|EEE40591.1| NAD-dependent DNA ligase N-terminal domain protein [Prochlorococcus
           marinus str. MIT 9202]
          Length = 249

 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 88/300 (29%), Gaps = 71/300 (23%)

Query: 36  YQYSKPIILDSEYDALKRRCDAIAHAF----PDLARSEDPNGPLNKIGGEMNLSLFKVTH 91
           Y+  K II D  +         +   F    P+       N         +   L K  +
Sbjct: 16  YRIGKGIISDDAF-------KQLEKLFMHVDPESDYFNQKNS-------SLLPKLAKENY 61

Query: 92  SIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151
                SL                              +++PKIDG  I IRY  GKF  A
Sbjct: 62  KEFLGSL------------------------LTKTRLSIQPKIDGCAIAIRYINGKFNKA 97

Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRK 211
                  +G DVS+ I+ I  +P               +    K DF    + + A  + 
Sbjct: 98  IT----KTGFDVSSKIKQIKNVP---------------DCIPIKRDFQIRGE-LYATNQV 137

Query: 212 PYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271
              + R          +       L+F    +          QYE L  ++  GF   + 
Sbjct: 138 AGISKR---ITRKYLNDKRGFGESLSFCCFQILNGR----LNQYETLNYLKKCGFSTPDS 190

Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR-WMISHKF 330
               N    I  Y       +    Y  +G+V K++   LQ    +     + W  + + 
Sbjct: 191 YFT-NHTSEIQIYKKNWLERKIFTKYPTNGIVIKINSRKLQLLREKSLPKNKEWQYAIEK 249


>gi|262196947|ref|YP_003268156.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
 gi|262080294|gb|ACY16263.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
          Length = 365

 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 61/181 (33%), Gaps = 46/181 (25%)

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
              +       +     + +     +     + I        D +  L  +   G+    
Sbjct: 213 AMLLRGDASERITLSTLKQIDISDKTVAVIRRAIGTRSKRYGDAYEMLQELEGRGEEAVP 272

Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           AI                                  ++ K + F+G L  I+R  A+  V
Sbjct: 273 AIRS--------------------------------LQGKTVAFSGALS-IRRFDAEIMV 299

Query: 671 TQLGAVVSAILSRKTDIIIVG-----DNPG---SKLEKAQQL---G--VKIMNEEQFLFL 717
            Q G  V+  +SRK D+++ G      +PG   SKL + ++L   G  + ++ E +F  L
Sbjct: 300 LQAGGTVAHAISRKIDVLVQGGGRSPRSPGALNSKLRQTKRLIEQGQPICVIGEREFRQL 359

Query: 718 L 718
           +
Sbjct: 360 I 360


>gi|329940730|ref|ZP_08290010.1| exonuclease [Streptomyces griseoaurantiacus M045]
 gi|329300024|gb|EGG43922.1| exonuclease [Streptomyces griseoaurantiacus M045]
          Length = 336

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 642 NVSSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPG-SKL 698
                ++   ++ F+G    + R   ++     G  V+  LSR T +++  D + G SK+
Sbjct: 240 EEGRPLKQGMRVAFSGD-TSVDRELLEDRAVDAGLHVATSLSRLTSLLVTNDPDSGTSKV 298

Query: 699 EKAQQLGVKIMNEEQFLFLLQ 719
            KA+Q G  +++E  F  LLQ
Sbjct: 299 LKARQFGTPVVDEAAFGQLLQ 319


>gi|227501930|ref|ZP_03931979.1| possible exonuclease [Corynebacterium accolens ATCC 49725]
 gi|227077314|gb|EEI15277.1| possible exonuclease [Corynebacterium accolens ATCC 49725]
          Length = 1118

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNE 711
           FTG    + R + +     +G  V   +++K+ +++    D+   K  KA++ GV I+ E
Sbjct: 332 FTGQFD-LPREEWERRAMAVGLSVGG-VTKKSVLLVAANPDSMSGKARKAREYGVPIIGE 389

Query: 712 EQFLFLLQQYNTTLRIHDDD 731
             F  LL   +   ++ + D
Sbjct: 390 TTFARLLGNMSGGGQLVEQD 409


>gi|17975108|ref|NP_536630.1| hypothetical protein K139p03 [Vibrio phage K139]
 gi|147671827|ref|YP_001215913.1| NAD-dependent DNA ligase [Vibrio cholerae O395]
 gi|153820796|ref|ZP_01973463.1| NAD-dependent DNA ligase [Vibrio cholerae B33]
 gi|165970237|ref|YP_001650868.1| putative NAD-dependent DNA ligase [Vibrio phage kappa]
 gi|229512069|ref|ZP_04401548.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Vibrio
           cholerae B33]
 gi|229519205|ref|ZP_04408648.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Vibrio
           cholerae RC9]
 gi|229607240|ref|YP_002877888.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Vibrio
           cholerae MJ-1236]
 gi|254849313|ref|ZP_05238663.1| NAD-dependent DNA ligase [Vibrio cholerae MO10]
 gi|262167834|ref|ZP_06035535.1| hypothetical protein VIJ_001005 [Vibrio cholerae RC27]
 gi|4530501|gb|AAD22066.1| Orf2 [Vibrio phage K139]
 gi|126521588|gb|EAZ78811.1| NAD-dependent DNA ligase [Vibrio cholerae B33]
 gi|146314210|gb|ABQ18750.1| NAD-dependent DNA ligase [Vibrio cholerae O395]
 gi|165292214|dbj|BAF98796.1| putative NAD-dependent DNA ligase [Vibrio phage kappa]
 gi|227014825|gb|ACP11034.1| NAD-dependent DNA ligase [Vibrio cholerae O395]
 gi|229343894|gb|EEO08869.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Vibrio
           cholerae RC9]
 gi|229352034|gb|EEO16975.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Vibrio
           cholerae B33]
 gi|229369895|gb|ACQ60318.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Vibrio
           cholerae MJ-1236]
 gi|254845018|gb|EET23432.1| NAD-dependent DNA ligase [Vibrio cholerae MO10]
 gi|262023742|gb|EEY42442.1| hypothetical protein VIJ_001005 [Vibrio cholerae RC27]
          Length = 301

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 14/88 (15%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------G 695
           + I   ++ FTG      R   +    +LGA V + ++++ D++++G            G
Sbjct: 212 NSISGLQVCFTGKFFAGNRKSIENKAKELGADVRSDVNKQLDLLVIGSMASRDWIHTSHG 271

Query: 696 SKLEKA---QQLG--VKIMNEEQFLFLL 718
            K+E     ++ G   KI+ E+ +L L+
Sbjct: 272 RKIESVINNRKSGSSTKILTEQAWLALI 299


>gi|311747943|ref|ZP_07721728.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1]
 gi|126574913|gb|EAZ79271.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1]
          Length = 51

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 26/47 (55%)

Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58
          ++ ++A + ++ L +EI + +  YY   + +I D E++  +   + +
Sbjct: 1  MNHQEAAQRIAQLSKEIDHPNQLYYMEDQAVISDFEFNQSRNDLNLL 47


>gi|301155073|emb|CBW14536.1| hypothetical phage protein [Haemophilus parainfluenzae T3T1]
          Length = 233

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 15/93 (16%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA-----ILSRKTDIIIVGD 692
           + +K  SS +E   + FTG      +   +E++  L A V        ++   D ++ G 
Sbjct: 146 QTKKAKSSPLE---ICFTG----FSKAD-KEHLEIL-AKVHDFKVRKTVTHNLDFLVTGY 196

Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           N G SK++ A  +G  ++NE QF+ +++    T
Sbjct: 197 NAGPSKIDAAMNVGAILLNESQFINMIETGEIT 229


>gi|300939286|ref|ZP_07153960.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 21-1]
 gi|300455793|gb|EFK19286.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
           MS 21-1]
          Length = 329

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 103/339 (30%), Gaps = 57/339 (16%)

Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQI 346
             +  ++ LP+  DG+V +  +    +          W+++ K+        +  I   +
Sbjct: 33  RNEWWKAKLPFVTDGVVVRAAKEPESRHW--LPGQAEWLVAWKYQPVAQVAEVKAIQFAV 90

Query: 347 GRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRA 406
           G++G ++ VA L PV +    +    +                    DI  GD++LV  A
Sbjct: 91  GKSGKISVVASLAPVMLDDKKVQRVNI-----------GSVRRWQEWDIAPGDQILVSLA 139

Query: 407 GEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA-CS 465
           G+ IP++                      +      R           +  C      C 
Sbjct: 140 GQGIPRID--------------------DVVWRGAERTKPTPPENRFNSLTCYFASDVCQ 179

Query: 466 AQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE 525
            Q + RL    S+    ++G+G+       ++               L   Q  +T    
Sbjct: 180 EQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFE----HIFSWLLLTPEQLQNT---- 231

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
              G        L+   N  R     R++ ++GI       A   A    S+        
Sbjct: 232 --PGIAKSKSAQLWHQFNLARQQPFTRWVMAMGI---PLTRAALNASDERSWSQLLFSTE 286

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
                    W  L   P  G   A+ ++E+ +N +    
Sbjct: 287 QF-------WQQL---PGTGSGRARQVIEWKENAQIKKL 315


>gi|303281526|ref|XP_003060055.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458710|gb|EEH56007.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 126

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 634 PSIGRHEKNVSSEI--EN--KKLVFTGTLQK---IQRHKAQEYVTQLGAVVSAILSRKTD 686
           P+     +     +  E    K+  TG L +   ++R + +  V   G V SA LS KTD
Sbjct: 11  PAAETPAEEGGGVLFREGRALKVAVTGILAEPRPMKRDQFKAAVEAAGGVYSAALSGKTD 70

Query: 687 IIIVGD-NPGSKLE 699
           +++ G+   G K E
Sbjct: 71  VLVCGEPKTGKKEE 84


>gi|328850331|gb|EGF99497.1| hypothetical protein MELLADRAFT_79481 [Melampsora larici-populina
           98AG31]
          Length = 234

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 27/104 (25%)

Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS---- 682
           +K      G  E        +     +FTG L+ + R +AQ      G       S    
Sbjct: 18  IKSAFIFTGSKEIPEGQPNCLAGLTFLFTGELESLSREEAQTLCKLYGG------SWFRC 71

Query: 683 --RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
             +K + +I             +  +  + E++ L L+  ++ +
Sbjct: 72  SAKKLE-VIA------------KHKITTLTEDKILELIGTHSAS 102


>gi|295839646|ref|ZP_06826579.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
 gi|295827583|gb|EDY45420.2| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
          Length = 331

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 3/76 (3%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPG-SKLEKAQQL 704
           ++  ++ F+G     +R   ++  T+ G  V+  +SR T +++  D + G SK  +A+Q 
Sbjct: 248 VQGMRVAFSGDTST-ERELLEDRATEAGLHVAGSISRLTSLLVTNDPDSGTSKTVRARQY 306

Query: 705 GVKIMNEEQFLFLLQQ 720
           G  +++E  F  LL+ 
Sbjct: 307 GTPVVDEAAFGQLLRD 322


>gi|123969095|ref|YP_001009953.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           AS9601]
 gi|123199205|gb|ABM70846.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           AS9601]
          Length = 249

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 92/289 (31%), Gaps = 63/289 (21%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +++ Y D+ Y +  + II D  +         +   F  +    +P+    K   ++ 
Sbjct: 5   LVRDVKYLDEQY-RIGEGIISDDAF-------KQLEKLF--IPVDPEPDYFNQK-NNKLL 53

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
             L K  +     SL                              +++PKIDG  I IRY
Sbjct: 54  PKLAKENYKKFLESL------------------------LTKTRLSIQPKIDGCAIAIRY 89

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
             GKF  A        G DVS+ I+ I  +P               +    K DF    +
Sbjct: 90  IDGKFNKAIT----KKGFDVSSKIKQIKNVP---------------DCIPIKRDFQIRGE 130

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
            + A  +    + R          +   I   L F    +          QYE L  ++ 
Sbjct: 131 -LYATNQVAGISQR---ITRKYLNDKKGIGESLRFCCFEILNGR----LNQYETLNYLKK 182

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            GF   +     N    I  Y       +    Y  +G+V K++   L+
Sbjct: 183 CGFSTPDSYFT-NHTSEIQIYKKNWLEKKIFEKYPTNGIVIKINSRKLK 230


>gi|308177615|ref|YP_003917021.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis
           Re117]
 gi|307745078|emb|CBT76050.1| putative DNA polymerase III subunit epsilon [Arthrobacter
           arilaitensis Re117]
          Length = 412

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS---KLEKAQQLGVKI 708
           +V TG + +  R + +  +   G      +++K  +++   +P S   K +KA+  G+ +
Sbjct: 343 VVLTGDMTR-PRSEIEAQLASAGFTPHRAITKKVALLVA-ADPDSLSGKAKKARDYGIPV 400

Query: 709 MNEE 712
           + EE
Sbjct: 401 VGEE 404


>gi|290961466|ref|YP_003492648.1| exonuclease [Streptomyces scabiei 87.22]
 gi|260650992|emb|CBG74110.1| putative exonuclease [Streptomyces scabiei 87.22]
          Length = 331

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 8/82 (9%)

Query: 644 SSEIE-NKKLVFTG--TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKL 698
              ++   ++ F+G  +++   R   ++   + G  V+  LSR T +++  D  +  SK+
Sbjct: 247 GKPLKQGMRVAFSGDTSVE---RDLLEDRAIEAGLHVATSLSRVTSLLVTNDPDSHTSKV 303

Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720
            KA+Q G  +++E  F  LL+ 
Sbjct: 304 VKARQYGTPVVDEAAFGQLLRD 325


>gi|326479986|gb|EGE03996.1| WGR domain-containing protein [Trichophyton equinum CBS 127.97]
          Length = 734

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEK 700
           S+ +  + +V +G+ +       +  V QLG   SA ++     +I        G+K ++
Sbjct: 2   SNPLAGQVVVVSGSFRSYNHETIKSIVEQLGGTFSATVTDACTHLITSKAAHPAGTKNQQ 61

Query: 701 AQQLG--VKIMNEEQF 714
           A  LG  ++I++ +  
Sbjct: 62  AIALGNDIQIVSLDWL 77


>gi|325957458|ref|YP_004292870.1| DNA polymerase iii polc-type [Lactobacillus acidophilus 30SC]
 gi|325334023|gb|ADZ07931.1| DNA polymerase iii polc-type [Lactobacillus acidophilus 30SC]
          Length = 272

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692
             S    + + ++   +K +  TG L    R +  + +  +G         KTD  I G 
Sbjct: 180 DVSGDPAKNDKNNAFYDKYVSATGKLNAYTRKEIAQMINNIGGHFQKNPGEKTDYFIAGK 239

Query: 693 -----NPGSKLEKAQQL 704
                   +KLEKA++L
Sbjct: 240 FEGNRGTSNKLEKAKKL 256


>gi|301384682|ref|ZP_07233100.1| hypothetical protein PsyrptM_18697 [Pseudomonas syringae pv. tomato
           Max13]
          Length = 147

 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           +VFTG      R + +E  TQ G  V     +    +  G+N G +K+EKA   G  I++
Sbjct: 75  IVFTG-FNAAIRVELEEKATQFGLKVMKTPGKNLTFLCYGENAGPTKVEKALDAGSFIID 133

Query: 711 EEQFLFLL 718
            ++FL L+
Sbjct: 134 ADEFLSLI 141


>gi|213968049|ref|ZP_03396194.1| hypothetical protein PSPTOT1_4935 [Pseudomonas syringae pv. tomato
           T1]
 gi|213927029|gb|EEB60579.1| hypothetical protein PSPTOT1_4935 [Pseudomonas syringae pv. tomato
           T1]
          Length = 119

 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           +VFTG      R + +E  TQ G  V     +    +  G+N G +K+EKA   G  I++
Sbjct: 47  IVFTG-FNAAIRVELEEKATQFGLKVMKTPGKNLTFLCYGENAGPTKVEKALDAGSFIID 105

Query: 711 EEQFLFLL 718
            ++FL L+
Sbjct: 106 ADEFLSLI 113


>gi|326468534|gb|EGD92543.1| polymerase [Trichophyton tonsurans CBS 112818]
          Length = 723

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEK 700
           S+ +  + +V +G+ +       +  V QLG   SA ++     +I        G+K ++
Sbjct: 2   SNPLAGQVVVVSGSFRSYNHETIKSIVEQLGGTFSATVTDACTHLITSKAAHPAGTKNQQ 61

Query: 701 AQQLG--VKIMN 710
           A  LG  ++I++
Sbjct: 62  AIALGNDIQIVS 73


>gi|32307200|gb|AAP79093.1| NAD-dependent DNA ligase [Bacillus catenulatus]
          Length = 121

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 214 ANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA G  R+L P    +R L+ FV+GL    E+      E L  ++ LGF VN   
Sbjct: 1   ANPRNAAVGSFRQLEPKVAASRKLDLFVYGLANAEELGIASHSEALDYLQELGFKVNPER 60

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           R+      ++++ +E    R  LPY+IDG+V KVD F+ +++LG  A+SPRW I++KF  
Sbjct: 61  RRCANIDEVIAFISEWHEKRPQLPYEIDGIVIKVDSFAQRRELGATAKSPRWAIAYKFPA 120

Query: 333 K 333
           +
Sbjct: 121 E 121


>gi|310800017|gb|EFQ34910.1| hypothetical protein GLRG_10054 [Glomerella graminicola M1.001]
          Length = 752

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---NP-GSKLEK 700
             +    +  +GT  K +R + + +++ LGA ++  +++KT  +I          +K+  
Sbjct: 24  QPLNGAVIAISGTFDK-KRTELESWLSSLGAGIAKSITKKTTHLISTPEDFKALTTKVAS 82

Query: 701 AQQLGVKIMN 710
           AQ+  + I++
Sbjct: 83  AQKNDIPIVS 92


>gi|227543169|ref|ZP_03973218.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227180978|gb|EEI61950.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 449

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD- 692
                 E N    +  + +  TG  + + +      +   GA +   +++KT I  VG  
Sbjct: 343 IPEPNTEANPDGLLYGQNVTLTGDFEPLDKGTLWSKIADQGATIGKNVTKKTTICAVGAW 402

Query: 693 -NPGSKLEKAQQLG-----VKIMN-EEQFLFL 717
               SK ++A++L      + I + E+ F+ L
Sbjct: 403 TKKTSKQKRAEELKEQGQDIAIWSKEKLFIVL 434


>gi|227488565|ref|ZP_03918881.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091459|gb|EEI26771.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 449

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD- 692
                 E N    +  + +  TG  + + +      +   GA +   +++KT I  VG  
Sbjct: 343 IPEPNTEANPDGLLYGQNVTLTGDFEPLDKGTLWSKIADQGATIGKNVTKKTTICAVGAW 402

Query: 693 -NPGSKLEKAQQLG-----VKIMN-EEQFLFL 717
               SK ++A++L      + I + E+ F+ L
Sbjct: 403 TKKTSKQKRAEELKEQGQDIAIWSKEKLFIVL 434


>gi|32396673|gb|AAP49294.1| NAD-dependent DNA ligase [Geobacillus thermodenitrificans]
          Length = 121

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 51/121 (42%), Positives = 74/121 (61%), Gaps = 1/121 (0%)

Query: 214 ANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA+G LR+L      +R L+ FV+GL    E+  +   E L  ++ LGF VN   
Sbjct: 1   ANPRNAAAGSLRQLESKVAASRQLDLFVYGLANAEELGIESHSEALDYLQALGFKVNPER 60

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           R+      ++++ NE    R  LPY+IDG+V KVD F+ Q++LG  A+SPRW I++KF  
Sbjct: 61  RRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQRELGATAKSPRWAIAYKFPA 120

Query: 333 K 333
           +
Sbjct: 121 E 121


>gi|298381865|ref|ZP_06991462.1| predicted protein [Escherichia coli FVEC1302]
 gi|298277005|gb|EFI18521.1| predicted protein [Escherichia coli FVEC1302]
          Length = 178

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 20/168 (11%)

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
                 F      +I  LG+  L    +       ++ P D+F+       +  K+  + 
Sbjct: 28  YSACWRFFEPRGVHIHQLGQTMLKQLVEKC----YVQKPLDMFS------MTAGKLTGLD 77

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
             G    + +   I + +++ L   +F+ GI  V  E A  LAK + + +          
Sbjct: 78  QSGPKLASIICRGIEQAKDVQLGELLFACGIYGVEEEEAWLLAKRFSNLEALYGA----- 132

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
                   SL+   L+ + +A     F+++P N+ A+  L  E    +
Sbjct: 133 -----SIDSLMSYNLLNEAVAVNTYNFFRHPLNVSALNELQTEGGLKV 175


>gi|293406131|ref|ZP_06650057.1| predicted protein [Escherichia coli FVEC1412]
 gi|291426137|gb|EFE99169.1| predicted protein [Escherichia coli FVEC1412]
          Length = 171

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 20/168 (11%)

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
                 F      +I  LG+  L    +       ++ P D+F+       +  K+  + 
Sbjct: 21  YSACWRFFEPRGVHIHQLGQTMLKQLVEKC----YVQKPLDMFS------MTAGKLTGLD 70

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
             G    + +   I + +++ L   +F+ GI  V  E A  LAK + + +          
Sbjct: 71  QSGPKLASIICRGIEQAKDVQLGELLFACGIYGVEEEEAWLLAKRFSNLEALYGA----- 125

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
                   SL+   L+ + +A     F+++P N+ A+  L  E    +
Sbjct: 126 -----SIDSLMSYNLLNEAVAVNTYNFFRHPLNVSALNELQTEGGLKV 168


>gi|268320049|ref|YP_003293705.1| hypothetical protein FI9785_1583 [Lactobacillus johnsonii FI9785]
 gi|262398424|emb|CAX67438.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
           johnsonii FI9785]
          Length = 320

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 27/124 (21%)

Query: 616 YQNPRN---ICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTL--QKIQRHKAQEY 669
           ++          V+ L L    P I +  +   S   +K +V TG L        +    
Sbjct: 199 FRQEHMLRAQEMVKTLDLTSEWPEIVKQSQAFRSPFAHKNVVITGDLDVDDY---ELANA 255

Query: 670 VTQLGAVVSAILSRKTDIIIVGD---------NPGSKLEKAQQL-----GVKIMNEEQFL 715
           V  LG  +   + + TD ++VGD              L KA+ L      ++I +E+ FL
Sbjct: 256 VKNLGGFIRDEVGQDTDYLLVGDHDFLRTDIVE----LNKARALKKQGQNIRIWSEQFFL 311

Query: 716 FLLQ 719
            +L 
Sbjct: 312 NVLD 315


>gi|218706125|ref|YP_002413644.1| hypothetical protein ECUMN_2949 [Escherichia coli UMN026]
 gi|218433222|emb|CAR14120.1| hypothetical protein from bacteriophage origin; putative DNA ligase
           fragment [Escherichia coli UMN026]
          Length = 208

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 20/168 (11%)

Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528
                 F      +I  LG+  L    +       ++ P D+F+       +  K+  + 
Sbjct: 58  YSACWRFFEPRGVHIHQLGQTMLKQLVEKC----YVQKPLDMFS------MTAGKLTGLD 107

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
             G    + +   I + +++ L   +F+ GI  V  E A  LAK + + +          
Sbjct: 108 QSGPKLASIICRGIEQAKDVQLGELLFACGIYGVEEEEAWLLAKRFSNLEALYGA----- 162

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636
                   SL+   L+ + +A     F+++P N+ A+  L  E    +
Sbjct: 163 -----SIDSLMSYNLLNEAVAVNTYNFFRHPLNVSALNELQTEGGLKV 205


>gi|32482046|gb|AAP49290.1| NAD-dependent DNA ligase [Bacillus sp. IMG-1]
          Length = 121

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 1/121 (0%)

Query: 214 ANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNAA G  R+L P    +R L+ FV+GL     +      E L  ++ LGF VN   
Sbjct: 1   ANPRNAAGGSFRQLEPKVAASRQLDLFVYGLADAEALGIASHSEALDYLQALGFKVNPER 60

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           R+      ++++ +E    R  LPY+IDG+V KVD F+ Q+ LG  A+SPRW I++KF  
Sbjct: 61  RRCANIDEVIAFISEWHDKRPQLPYEIDGIVIKVDSFAQQRALGATAKSPRWAIAYKFPA 120

Query: 333 K 333
           +
Sbjct: 121 E 121


>gi|255079352|ref|XP_002503256.1| predicted protein [Micromonas sp. RCC299]
 gi|226518522|gb|ACO64514.1| predicted protein [Micromonas sp. RCC299]
          Length = 306

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-DN 693
                +   +S I+NK +V  GTL  + R  A+  +T  G      ++ KT++I++G   
Sbjct: 178 FDSPQKTAGASRIKNKCVVLVGTLHGMSRADAKTAITAAGGHWRDTITCKTELIVLGLSK 237

Query: 694 PGSKLEKAQQ----LGVKIMNEEQFLF 716
           P + LEKA++      +  +   + L 
Sbjct: 238 PSA-LEKAEETAEQKQIDTITGNELLE 263


>gi|154291124|ref|XP_001546148.1| predicted protein [Botryotinia fuckeliana B05.10]
 gi|150847097|gb|EDN22290.1| predicted protein [Botryotinia fuckeliana B05.10]
          Length = 681

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700
            N  + +  +  V +GTL  + R   ++     GA  S  +++ T  +++GDNP +K  K
Sbjct: 557 DNTGTFLAGRTFVVSGTLPTVGRINTEKLSRLYGAKTSRAITKATTDVVLGDNPLAKQVK 616

Query: 701 A-QQLGVKIMNEEQFLFL---LQQYNTTL 725
             + L    M+ + F+ +   L +YN  L
Sbjct: 617 ELKDLSPNTMDVDAFIAMLTSLSKYNNNL 645


>gi|330956774|gb|EGH57034.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae Cit 7]
          Length = 35

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
              GSKL KA +LG+ +++E+  L  L +    
Sbjct: 1   PGAGSKLTKANELGLTVLDEDALLKRLAELGVA 33


>gi|6746428|gb|AAF27555.1| unknown [Lactococcus lactis]
          Length = 83

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 16/76 (21%)

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----D-----NPGSKLEKAQQLGVK---- 707
           + R +AQ  ++ L     + +++KT  ++ G    D     +P  KL +A+Q  ++    
Sbjct: 1   MTRKQAQAIISGLEGHNQSSVTKKTTRLVTGYFPIDLIKGYSPSQKLTEAEQ-AIESGQP 59

Query: 708 --IMNEEQFLFLLQQY 721
             IM+E++F+  L Q+
Sbjct: 60  LIIMSEKEFVDFLAQF 75


>gi|330830139|ref|YP_004393091.1| hypothetical protein B565_2439 [Aeromonas veronii B565]
 gi|328805275|gb|AEB50474.1| hypothetical protein B565_2439 [Aeromonas veronii B565]
          Length = 156

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 46/98 (46%), Gaps = 7/98 (7%)

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682
             ++ LLK     + + +      +E   + FTG   K ++ +  +    +  +V   ++
Sbjct: 58  NEIQHLLKSGHIEVQKPKVKA--LLE---VCFTG-FSKKEKDELVQLAESMQCLVRKSVT 111

Query: 683 RKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
              D++  GDN G SK+  A+   V ++N+ +F+ +L 
Sbjct: 112 TDLDVLCYGDNAGPSKMRDARNKSVLVINKVEFISMLN 149


>gi|255565595|ref|XP_002523787.1| poly [ADP-ribose] polymerase, putative [Ricinus communis]
 gi|223536875|gb|EEF38513.1| poly [ADP-ribose] polymerase, putative [Ricinus communis]
          Length = 815

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 40/108 (37%), Gaps = 14/108 (12%)

Query: 625 VEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSA 679
           +  LLK+      R  + + +         +  +G   ++ R     ++ + + G  VS 
Sbjct: 164 IADLLKKHQDPKNRPRQELGAPGKPFAGMIISLSG---RLSRTHQYWKKTIEKYGGKVSN 220

Query: 680 ILSRKTDIIIVGD-----NPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
            +      ++V          SKL +A +  + +  EE  L  +++  
Sbjct: 221 SVIG-VTCLVVSPAERERGGSSKLSEAMERNIPVAREEWLLDSIEKQE 267


>gi|326489849|dbj|BAJ93998.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 549

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
                   +  TG L K  R + +E   +LG   S  L  K   ++V    G K E A +
Sbjct: 53  DGPFAGLVVCVTG-LSKEARSQVKEAAERLGGDYSGSLHPKCTHLVVQSFAGRKFEHALK 111

Query: 704 LG 705
            G
Sbjct: 112 HG 113


>gi|327300553|ref|XP_003234969.1| polymerase [Trichophyton rubrum CBS 118892]
 gi|326462321|gb|EGD87774.1| polymerase [Trichophyton rubrum CBS 118892]
          Length = 726

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEK 700
           S  +  + +V +G+ +       +  V QLG   SA ++     ++        G+K ++
Sbjct: 2   SKPLAGQVVVVSGSFRAYNHDTIKYIVEQLGGTFSATVTDACTHLVTSKAAHPAGTKNQQ 61

Query: 701 AQQLG--VKIMNEEQF 714
           A  LG  +KI++ +  
Sbjct: 62  AIALGNDIKIVSLDWL 77


>gi|167767031|ref|ZP_02439084.1| hypothetical protein CLOSS21_01549 [Clostridium sp. SS2/1]
 gi|167711006|gb|EDS21585.1| hypothetical protein CLOSS21_01549 [Clostridium sp. SS2/1]
 gi|291559629|emb|CBL38429.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [butyrate-producing bacterium SSC/2]
          Length = 509

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 26/54 (48%)

Query: 13  SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           S    +  +  L+++I  +   YY+Y+K  + D  YD + +    +   +P++ 
Sbjct: 415 SKLSIKDRIELLQRKIILNSIAYYKYNKSPMSDKAYDEMCKELVDMQKKYPNIK 468


>gi|315121970|ref|YP_004062459.1| DNA ligase, NAD-dependent [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|315122938|ref|YP_004063427.1| DNA ligase, NAD-dependent [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495372|gb|ADR51971.1| DNA ligase, NAD-dependent [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496340|gb|ADR52939.1| DNA ligase, NAD-dependent [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 127

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSK--PIILDSEYDALKRRCDAIAHA 61
               P+  LS  +A  E   L + + +H   YY+ S   P++ D++YD ++ R   +A  
Sbjct: 52  NDFKPVSQLSFWEALIETEYLTKIVLHHRRWYYRLSDETPLL-DADYDKIEIRIIKLAEH 110

Query: 62  FPDLARSEDP 71
           FP+L     P
Sbjct: 111 FPELYSLAHP 120


>gi|126696886|ref|YP_001091772.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543929|gb|ABO18171.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           MIT 9301]
          Length = 249

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 94/289 (32%), Gaps = 63/289 (21%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L +++ Y D+ Y +  + II D  +         +   F  +   ++PN    K   ++ 
Sbjct: 5   LVRDVKYLDEQY-RIGEGIISDDAF-------KQLEKLF--IPVDQEPNYFNQK-NNKLL 53

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
             L K  +     SL                              +++PKIDG  I IRY
Sbjct: 54  PKLAKENYKEFLESL------------------------LTKTRLSIQPKIDGCAIAIRY 89

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203
             GKF  A        G DVS+ I+ I  +P  + +               K DF    +
Sbjct: 90  LDGKFNKAIT----KKGFDVSSKIKQIKNVPDYIPI---------------KRDFQIRGE 130

Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
            + A  +    + R          +   I   L F    +          QYE L  ++ 
Sbjct: 131 -LYATNQVAGISQR---ITRKYLNDKKGIGESLRFCCFQILNGR----LNQYETLNYLKK 182

Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312
            GF   +     N    I  Y       +    Y  +G+V K++   LQ
Sbjct: 183 CGFSTPDSYFT-NHTSEIQIYKKNWLERKIFAKYPTNGIVVKINSRKLQ 230


>gi|307326641|ref|ZP_07605834.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
 gi|306887625|gb|EFN18618.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
          Length = 638

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG--SKLEKAQQLGV 706
             K+  TG      R +        G  +   +SR T +++  +     +K  +A   GV
Sbjct: 228 GMKVAITGE-TAHARAELVGRAVAAGLNMMTSVSRHTSVLVTNEPASDSAKARRALAEGV 286

Query: 707 KIMNEEQFLFLLQQ 720
            +++E  FL LL  
Sbjct: 287 PVIDEHTFLRLLAD 300


>gi|294628658|ref|ZP_06707218.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
 gi|292831991|gb|EFF90340.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
          Length = 328

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPGS-KLEKAQQLGV 706
             ++ F+G     +R   ++  T+ G  V+  LSR T +++  D + G+ K  KA+Q G 
Sbjct: 249 GMRVAFSGDTST-ERELLEDRATEAGLHVATSLSRLTSLLVTNDPDSGTTKTAKARQYGT 307

Query: 707 KIMNEEQFLFLLQQ 720
            +++E  F  LL  
Sbjct: 308 PVVDEAAFGQLLAD 321


>gi|111018828|ref|YP_701800.1| DNA polymerase III [Rhodococcus jostii RHA1]
 gi|110818358|gb|ABG93642.1| probable DNA polymerase III [Rhodococcus jostii RHA1]
          Length = 649

 Score = 50.2 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQ 702
             ++  KLV +G+   + R      +T  G  V   +SR+T +++  D  +  +K+ +A 
Sbjct: 274 GLVQGMKLVISGS-TDVPRLSLAARLTAAGLDVMNSVSRQTGVVVCNDPHSSSAKVRRAV 332

Query: 703 QLGVKIMNEEQFLFLL 718
             G+ ++ E Q   +L
Sbjct: 333 ADGIPVLTERQLGEML 348


>gi|271965325|ref|YP_003339521.1| DNA polymerase III subunit epsilon-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270508500|gb|ACZ86778.1| DNA polymerase III epsilon subunit and related 3'-5'
           exonuclease-like protein [Streptosporangium roseum DSM
           43021]
          Length = 407

 Score = 50.2 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS---KLEKAQQLGVKI 708
           +VFTG +    R   +    Q G +    ++RK  +++   +P S   K  KA+  G+ I
Sbjct: 339 VVFTGEMDG-PRDDWEWRALQAGYIPHGYITRKVRLLVA-ADPDSLSAKARKARDYGIPI 396

Query: 709 MNEEQFLFLL 718
           +  + F  +L
Sbjct: 397 VTPDAFARML 406


>gi|46123093|ref|XP_386100.1| hypothetical protein FG05924.1 [Gibberella zeae PH-1]
          Length = 752

 Score = 50.2 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQ--KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-- 692
              +  V   ++   +  +G            +  + + G   +  +++ T  ++  D  
Sbjct: 7   AAAKAPVDPPLDGCAIAVSGKFDDIGHSHASLETLIRRHGGTFTRSVTKATTHVVSTDDD 66

Query: 693 -NPGS-KLEKAQQLGVKIMNEEQFLF 716
            N GS K+  AQ  G+ IMN    L 
Sbjct: 67  FNSGSNKVTTAQAKGLPIMNPSWLLD 92


>gi|213421635|ref|ZP_03354701.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 325

 Score = 50.2 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 107/335 (31%), Gaps = 56/335 (16%)

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355
           P+  DG+V ++ +    +          W+ + K+       ++  I   +G++G +T V
Sbjct: 38  PFVTDGVVIRMAKEPASQYWRPGQGD--WLAAWKYPPVAQVAQVSAIQFSVGKSGKITVV 95

Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415
           A L PV +    +    +                    DI  GD++LV  AG+ IP++ +
Sbjct: 96  ASLVPVILDDKRVQRVNI-----------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDE 144

Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475
           ++   R                         P      +         C  Q + RL   
Sbjct: 145 VVWRSRERSKPV-------------------PPGSHFNSLTCFYASATCQEQFISRLVWL 185

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
            SR A  ++G+G+       ++               +      ++ +I N  G      
Sbjct: 186 GSRSALGLDGMGEASWRALHQT----------HRFEHIFSWLALTSAQIANTPGVAKGKS 235

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
             ++   N  R  S  R+I ++    +    A   A    S++                 
Sbjct: 236 EQIWRQFNLARRQSFTRWIMAM---DIPLTQAALQASGDRSWEQLLMRTEQHWRQLPAT- 291

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
                    G+  A  ++++  NP+ I A+   L 
Sbjct: 292 ---------GERRAGRVIDWRNNPQ-INALSRWLA 316


>gi|189490483|ref|YP_001957053.1| putative DNA ligase [Pseudomonas phage 201phi2-1]
 gi|164609548|gb|ABY63157.1| putative DNA ligase [Pseudomonas phage 201phi2-1]
          Length = 308

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 69/227 (30%), Gaps = 18/227 (7%)

Query: 107 LRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSAC 166
           +R ++ ++         ++I   + P  +G  + + Y+ G    A  +G G  G D +  
Sbjct: 96  VRNWLAKV----DCDYTDNIDIIMTPYYNGCRVELVYQGGSLHKAITKGGGIMGTDFTMN 151

Query: 167 IRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR 226
              +  IP    +   E I +RG +  + N     ++             R  ++ ++  
Sbjct: 152 AYLVEGIP--QQILDNERISIRGVITSTLNHVWGEDE------------KRVISASLMST 197

Query: 227 LNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYN 286
                   YL F          +        +     +     +         G +    
Sbjct: 198 EPTNINLNYLVFVPDDWHVPGAMLNTKDLRSISLAWDMEPAGMDSFPGQYKEIGYLEEKI 257

Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
           E             G+++ VD    + +LG  +  P W I  +    
Sbjct: 258 ETFRKEIKSKIPYSGILFTVDSLGRKMELGYTSIHPEWAILLEEKSN 304


>gi|254574486|ref|XP_002494352.1| DNA Polymerase II Epsilon complex with BRCT domain [Pichia pastoris
           GS115]
 gi|238034151|emb|CAY72173.1| DNA Polymerase II Epsilon complex with BRCT domain [Pichia pastoris
           GS115]
 gi|328353831|emb|CCA40228.1| DNA polymerase II complex component [Pichia pastoris CBS 7435]
          Length = 620

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 11/101 (10%)

Query: 615 FYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670
           F +        E  L    KE+S S            E  ++  T T +  QR + Q+ +
Sbjct: 67  FLRPKSIKEIYEEWLQGTRKELSFSGSELPV-----FEGLRVCLTRTKEPSQREEFQKLI 121

Query: 671 TQLGAVVSAILS-RKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
              G  VS  L+  K   I+  +  G + EKA +  +  ++
Sbjct: 122 EDRGGKVSEALTMGK-SCIVTSEKSGKRYEKALEWKIPTLD 161


>gi|239928032|ref|ZP_04684985.1| DNA polymerase III [Streptomyces ghanaensis ATCC 14672]
 gi|291436367|ref|ZP_06575757.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291339262|gb|EFE66218.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 631

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 644 SSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEK 700
              ++   K+  TG      R +        G  +   +SR T +++  +     +K  +
Sbjct: 222 GGPLQQGMKVAITGE-TAHARAELVGRAVAAGLNMMTSVSRHTSVLVTNEPAADSAKARR 280

Query: 701 AQQLGVKIMNEEQFLFLLQQ 720
           A   GV +++E  FL LL  
Sbjct: 281 ALAEGVPVVDERTFLRLLAD 300


>gi|269796817|ref|YP_003316272.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
 gi|269099002|gb|ACZ23438.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
          Length = 611

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQL 704
           ++  K+VFTG  ++  R          G  V    S +T +++         KL  A+  
Sbjct: 234 VQGMKIVFTGPTER-PRDDLVRLAVGAGLDVMNSASSRTSVVVCATPAATTRKLAAARAH 292

Query: 705 GVKIMNEEQFLFLLQQ 720
           G++I++E  FL L+ +
Sbjct: 293 GIEIVDERVFLDLVGR 308


>gi|262204572|ref|YP_003275780.1| exonuclease RNase T and DNA polymerase III [Gordonia bronchialis
           DSM 43247]
 gi|262087919|gb|ACY23887.1| Exonuclease RNase T and DNA polymerase III [Gordonia bronchialis
           DSM 43247]
          Length = 590

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS----KLEK 700
             I+  K+  TG    + R +    ++  G  V   +S KT I+I   NPGS    KL++
Sbjct: 213 GLIQGTKVAITGP-TTVPRTELARRLSDAGLDVMNSVSGKTGIVIA--NPGSPDSRKLQR 269

Query: 701 AQQLGVKIMNEEQFLFL 717
           A+  G  +++E   L L
Sbjct: 270 ARLDGTPVLDEGTMLRL 286


>gi|224105065|ref|XP_002313672.1| predicted protein [Populus trichocarpa]
 gi|222850080|gb|EEE87627.1| predicted protein [Populus trichocarpa]
          Length = 809

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 11/84 (13%)

Query: 646 EIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAILSRKTDIIIVG----DNPGS-KL 698
            +    +  +G   ++ R     +  + + G  VS+   +    ++V     +  GS KL
Sbjct: 182 PLAGIVVSLSG---RLSRTHQYWKREIEKHGGKVSSSF-KGITCLVVSPAERERGGSTKL 237

Query: 699 EKAQQLGVKIMNEEQFLFLLQQYN 722
             A + G+ ++ E+  L  +++  
Sbjct: 238 ADALEAGIPVVREDWLLDSIEKQE 261


>gi|257485000|ref|ZP_05639041.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci
          ATCC 11528]
          Length = 33

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 14/32 (43%)

Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILD 45
          ++     +  L  E+  H+  Y+   +P I D
Sbjct: 1  MKAVETRILELRAELDEHNYRYHVLDEPSIPD 32


>gi|213620560|ref|ZP_03373343.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-2068]
          Length = 99

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73
            +A +E++ L+Q+++  +D Y++     + DS YD L  R             S  P  
Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSS-TPVS 85

Query: 74 P 74
          P
Sbjct: 86 P 86


>gi|296100338|ref|YP_003620507.1| hypothetical protein LKI_10796 [Leuconostoc kimchii IMSNU 11154]
 gi|295831655|gb|ADG39538.1| hypothetical protein LKI_10796 [Leuconostoc kimchii IMSNU 11154]
          Length = 93

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 8/73 (10%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DN------PGSKLEKAQQ 703
           ++FTG L  + R +AQ+    LGA     +++K   +I G  +          K++ A+ 
Sbjct: 9   IIFTGKLNSLTRLQAQQLAAMLGAFPQTNMNQKIKYVIAGQIEQSMFEILTTKKIKYAET 68

Query: 704 LGVKIMNEEQFLF 716
             V+I+NE +FL 
Sbjct: 69  HSVEILNESEFLK 81


>gi|291222915|ref|XP_002731461.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
          Length = 1075

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 8/88 (9%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII-----VGDNPGSKLEKA 701
           +++ K+V  G L +       + + QLG  V   +++    +I     V  N   K+++A
Sbjct: 261 LQDCKIVLVGKLSE-SNKDITKKIKQLGGEVVTKINKNVACVISTQDEVN-NMSKKIKEA 318

Query: 702 QQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
           +  GV +++E+ FL  +++    L I  
Sbjct: 319 KAAGVHVVSED-FLNTVKKGGAALMIQQ 345


>gi|115395844|ref|XP_001213561.1| poly polymerase (Poly[ADP-ribose] synthetase) [Aspergillus terreus
           NIH2624]
 gi|114193130|gb|EAU34830.1| poly polymerase (Poly[ADP-ribose] synthetase) [Aspergillus terreus
           NIH2624]
          Length = 653

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 650 KKLVF--TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----DNPGSKLEKAQQ 703
           +  V   +GT    ++ + +  +   GA  S  ++     +I      DN  SK ++A +
Sbjct: 7   QSFVIALSGTFSGYKQAEVRALIESHGAKFSHSVTSDLTHLITTQREIDNKNSKYKQATK 66


>gi|317035115|ref|XP_001401109.2| subunit of DNA polymerase II [Aspergillus niger CBS 513.88]
          Length = 785

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 646 EIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
                 +  TG  + +  R++ Q+ VT  GA     L++    +I  +  G K + A Q 
Sbjct: 107 TFAGLSICITG-FEDMSLRNRIQDTVTAHGAEFRKDLTKNVTHLIARNTEGEKYKFATQW 165

Query: 705 GVKIMNEEQFLFLLQQ 720
           G++I+  + F   L++
Sbjct: 166 GIRIVTVKWFEDSLER 181


>gi|134081791|emb|CAK42047.1| unnamed protein product [Aspergillus niger]
          Length = 795

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 646 EIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
                 +  TG  + +  R++ Q+ VT  GA     L++    +I  +  G K + A Q 
Sbjct: 117 TFAGLSICITG-FEDMSLRNRIQDTVTAHGAEFRKDLTKNVTHLIARNTEGEKYKFATQW 175

Query: 705 GVKIMNEEQFLFLLQQ 720
           G++I+  + F   L++
Sbjct: 176 GIRIVTVKWFEDSLER 191


>gi|319935781|ref|ZP_08010210.1| hypothetical protein HMPREF9488_01041 [Coprobacillus sp. 29_1]
 gi|319809216|gb|EFW05665.1| hypothetical protein HMPREF9488_01041 [Coprobacillus sp. 29_1]
          Length = 301

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 84/238 (35%), Gaps = 36/238 (15%)

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
                 +   +    Q     +  +L    +S  +LY S        +   +    ++ +
Sbjct: 76  IHHYFENTIVVSHDIQGDMMNLRAVLKQNHISYPHLYMSCTNVLAHLVYPDLHKYNVKEL 135

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP-----LVGDIIAQAIVEFYQ 617
              I      ++      A     I     +   +L  +        G+          +
Sbjct: 136 SQMIGFEFQAHHALDDAKACAQILIEMLKYEHCETLQELHQRFHLDFGE---------MK 186

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
                  +     E++P +    +   + + ++ + FTG L  + R   +E   Q+ A+ 
Sbjct: 187 ENYYRNIIS---AEIAPQLRELSQREDAFLYHQFVCFTGKLS-MPRELLEEKTKQVSALA 242

Query: 678 SAILSRKTDIIIVG-----------DNPGSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
           +  +S +T+ +++G           +N   K++KA QL      ++I++E ++L LL+
Sbjct: 243 TQQVSTQTNYLVIGGKGYHKVRFGNEN--KKVKKAIQLMKQGQDLRIVHENEYLKLLE 298


>gi|195998397|ref|XP_002109067.1| hypothetical protein TRIADDRAFT_19562 [Trichoplax adhaerens]
 gi|190589843|gb|EDV29865.1| hypothetical protein TRIADDRAFT_19562 [Trichoplax adhaerens]
          Length = 968

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 61/139 (43%), Gaps = 26/139 (18%)

Query: 607 IIAQAIV---EFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQ 659
            I++++    +F ++ +          L ++   +        S++ ++   +V  G L 
Sbjct: 330 KISKSLRNDSDFLKDFKFKAGERIFPKLTQKAPTTPTTAITTPSAKCLKGVAIVIIGKLS 389

Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIV----GD--NPGSKLEKAQQLGVKIMNEEQ 713
           K  +   ++ +  LG  V   LS   DI++     G+    G K+++A++L + I++E+ 
Sbjct: 390 K-TQAALKKDIESLGGTVEKDLSS--DIVLCISSNGEVKKNGKKIKEARELKLPIVDED- 445

Query: 714 FL---------FLLQQYNT 723
           FL          L+ ++N 
Sbjct: 446 FLTAVTDGDPKALVSKHNI 464


>gi|227548773|ref|ZP_03978822.1| AAA ATPase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079185|gb|EEI17148.1| AAA ATPase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 946

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 680 ILSR-KTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716
            +S+ +TD+++ GD  +   K + A++ G  I+ +E+F  
Sbjct: 725 SVSKTRTDVLVAGDPASMSRKAQNAREFGTPIITQEEFER 764


>gi|306822551|ref|ZP_07455929.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|309801474|ref|ZP_07695601.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|304554096|gb|EFM42005.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|308221989|gb|EFO78274.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 328

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGV 706
             K+V TG++++ +R   +  +  +G  V   ++++  +++  D  +  +K  KA+  G+
Sbjct: 252 GDKIVLTGSMRQ-RRSDWETELESMGLEVRPSVTKQVRLVVAADPYSESTKARKARDYGI 310

Query: 707 KIMNE 711
            I+ E
Sbjct: 311 PIVAE 315


>gi|283456242|ref|YP_003360806.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
 gi|283102876|gb|ADB09982.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
          Length = 317

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGV 706
             K+V TG++++ +R   +  +  +G  V   ++++  +++  D  +  +K  KA+  G+
Sbjct: 241 GDKIVLTGSMRQ-RRSDWETELESMGLEVRPSVTKQVRLVVAADPYSESTKARKARDYGI 299

Query: 707 KIMNE 711
            I+ E
Sbjct: 300 PIVAE 304


>gi|171742687|ref|ZP_02918494.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
           27678]
 gi|171278301|gb|EDT45962.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
           27678]
          Length = 328

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGV 706
             K+V TG++++ +R   +  +  +G  V   ++++  +++  D  +  +K  KA+  G+
Sbjct: 252 GDKIVLTGSMRQ-RRSDWETELESMGLEVRPSVTKQVRLVVAADPYSESTKARKARDYGI 310

Query: 707 KIMNE 711
            I+ E
Sbjct: 311 PIVAE 315


>gi|47224333|emb|CAG09179.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 841

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 17/92 (18%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA-----IL---SRK-TDIIIVGDNP 694
              +   KLV  G L K  +   +  V +LG  ++       L   S+K        +  
Sbjct: 131 DKPLTGMKLVAVGKLSK-NKDDLKAAVEELGGKITGAANKASLCLSSKKEL------EKM 183

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
             K+E+ ++ GV++++E+ FL  ++     L+
Sbjct: 184 TKKMEEVKEAGVRVVSED-FLTDIKSSGKALQ 214


>gi|294811879|ref|ZP_06770522.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|326440385|ref|ZP_08215119.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|294324478|gb|EFG06121.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 334

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 644 SSEIE-NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEK 700
              ++   ++ F+G    + R   ++   + G  +S  +SR T +++  D   P SK  +
Sbjct: 251 GKPLKQGMRVAFSGD-TSVDRELLEDRAFEAGLHISTSVSRLTSLLVTNDPHAPTSKTGR 309

Query: 701 AQQLGVKIMNEEQFLFLLQQ 720
           A   G  I++E  F  LL+ 
Sbjct: 310 ATAYGTPIVDEAAFTQLLRD 329


>gi|315048247|ref|XP_003173498.1| polymerase 2 ADP-ribosyltransferase 2 [Arthroderma gypseum CBS
           118893]
 gi|311341465|gb|EFR00668.1| polymerase 2 ADP-ribosyltransferase 2 [Arthroderma gypseum CBS
           118893]
          Length = 739

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEK 700
           S  +  + +V +G+ +       +  V QLG   SA ++     +I        G+K ++
Sbjct: 2   SKILAGQVVVVSGSFRSYNHEAIKYIVEQLGGSFSATVTDACTHLITSKAAHPAGTKNQQ 61

Query: 701 AQQLG--VKIMNEEQFLF 716
           A  LG  +KI++ +    
Sbjct: 62  AIALGNDIKIVSLDWLTE 79


>gi|328771464|gb|EGF81504.1| hypothetical protein BATDEDRAFT_87455 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 786

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           ++   +  +G L +  R+  ++ V +LG   +   +     +I       K + A +LGV
Sbjct: 5   LQGFVVCVSG-LSEPDRNIVEQRVIELGGKFTGSFTTHVTHLISSSTSTDKYKVALELGV 63

Query: 707 KIMNEEQFLFLLQQYNT 723
            I++  Q++  L+  N 
Sbjct: 64  PIISP-QWVSCLESNND 79


>gi|317049607|ref|YP_004117255.1| BRCT domain-containing protein [Pantoea sp. At-9b]
 gi|316951224|gb|ADU70699.1| BRCT domain protein [Pantoea sp. At-9b]
          Length = 160

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 8/72 (11%)

Query: 652 LVFTGTLQKIQRHKAQEYVT---QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707
           + FTG     ++   +  +      G  V + +++   ++  G N G +K+  A+  GV 
Sbjct: 86  ICFTG----FKKADKERLIECATANGMTVRSSVTQNLQLLCCGYNAGPTKVTAARMKGVV 141

Query: 708 IMNEEQFLFLLQ 719
           I++EEQF   ++
Sbjct: 142 ILDEEQFADFVK 153


>gi|305680841|ref|ZP_07403648.1| exonuclease, DNA polymerase III, epsilon subunit family protein
            [Corynebacterium matruchotii ATCC 14266]
 gi|305659046|gb|EFM48546.1| exonuclease, DNA polymerase III, epsilon subunit family protein
            [Corynebacterium matruchotii ATCC 14266]
          Length = 2479

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 15/104 (14%)

Query: 622  ICAVEALLKEVSPSIGRHEKNVSSEIE---NKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
               VE +L   S      +    S +      ++ FTGT     R   ++     G +V 
Sbjct: 2381 REVVEEILNTGSTGDDATQV---STLTLQPGDRVAFTGT-----RAG-EDAAVAAGLIVG 2431

Query: 679  AILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
              +++ T +++  D  +   K +KA+Q  + I+ E +F  L+  
Sbjct: 2432 G-VTKATVVLVAADPDSMSGKAKKARQYHIPIITEHRFNQLVAD 2474


>gi|225021279|ref|ZP_03710471.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC
            33806]
 gi|224946012|gb|EEG27221.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC
            33806]
          Length = 2493

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 15/104 (14%)

Query: 622  ICAVEALLKEVSPSIGRHEKNVSSEIE---NKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
               VE +L   S      +    S +      ++ FTGT     R   ++     G +V 
Sbjct: 2395 REVVEEILNTGSTGDDATQV---STLTLQPGDRVAFTGT-----RAG-EDAAVAAGLIVG 2445

Query: 679  AILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
              +++ T +++  D  +   K +KA+Q  + I+ E +F  L+  
Sbjct: 2446 G-VTKATVVLVAADPDSMSGKAKKARQYHIPIITEHRFNQLVAD 2488


>gi|301623749|ref|XP_002941174.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Xenopus (Silurana)
           tropicalis]
          Length = 988

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 25/105 (23%)

Query: 638 RHEKNVSSEIEN-KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKTDIII 689
                    + N K LV  G L K  + + +  +  LG  V+         +S K ++  
Sbjct: 353 EETVPEGKPLTNAKVLVI-GKLSK-NKDEVKALIEGLGGKVTGSAHKATLCISTKKEV-- 408

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLF----------LLQQYNTT 724
             +    K+E  +   V++++ + FL           LL QY  +
Sbjct: 409 --EKMSKKMEDVKAANVRVVS-DDFLKEVESGKSVQELLSQYGIS 450


>gi|72391068|ref|XP_845828.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62176455|gb|AAX70563.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70802364|gb|AAZ12269.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 807

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/320 (8%), Positives = 54/320 (16%), Gaps = 21/320 (6%)

Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY-ANPRNAASGILRRLNPTDITR 234
                 P        V    +            G+             +L       +  
Sbjct: 130 CPLPCHPGPCVPCSAVSGPGSCGCGSTSYTWRCGQPDPLKTCDRICGKMLSCGKH--LCP 187

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
                    G + +           +    G  V +  +          ++ E      T
Sbjct: 188 DKCHHGACRGCSKQSTTSCHCGSEVRPMRCGSTVFSCGKVCGRELKCGVHHCERMCHEGT 247

Query: 295 LPYDIDG--------------LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340
            P                   +V +          G           HK   K       
Sbjct: 248 CPPCKTDPSVVATCPCGSVPLVVVRTRCSDPVPVCGNVCGRWLDCGEHKCDAKCHEGGCE 307

Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
               Q+  T          P  +  +   N                +     +       
Sbjct: 308 PCQQQVAATCSCGKTQATLPCLMRRSFRCNKVCKAALSCGKHQCRARCCPARKGNNADAH 367

Query: 401 VLVKRAGEVIPKVVDIIVNERHPDAQP----FSFPSFCPICQSRVVRDLNPKTGKLVAAH 456
              +   + +    + +               S    C      ++      T       
Sbjct: 368 CCRQVCNKKLSCGHNCMELCHRGPCPSCPNVVSERLRCRCGAEELMPPQPCGTKPPQCNR 427

Query: 457 RCTGGLACSAQQLERLKHFV 476
            C+  L C       + HF 
Sbjct: 428 PCSVPLPCGHPTGSHICHFG 447


>gi|321475185|gb|EFX86148.1| hypothetical protein DAPPUDRAFT_222139 [Daphnia pulex]
          Length = 597

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 10/65 (15%)

Query: 652 LVF----TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK--LEKAQQLG 705
           +VF    TG+     +  A E   +LGA V    S+K   +I  D  GSK   +KA+ LG
Sbjct: 28  VVFVDVRTGS-DNRSKSVANEM-ERLGATVVLHFSKKVTHVIFKD--GSKPIYDKARTLG 83

Query: 706 VKIMN 710
           + I++
Sbjct: 84  IPIVS 88


>gi|302891805|ref|XP_003044784.1| hypothetical protein NECHADRAFT_43760 [Nectria haematococca mpVI
           77-13-4]
 gi|256725709|gb|EEU39071.1| hypothetical protein NECHADRAFT_43760 [Nectria haematococca mpVI
           77-13-4]
          Length = 853

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +  TG  ++  R +    +T  G   +  L++K   +IV    G K E A+Q G+
Sbjct: 149 ICLTGFGEQ--RDEIALKITSNGGRYTGDLTKKCSHLIVNKPEGRKYEAARQWGI 201


>gi|153816808|ref|ZP_01969475.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126512611|gb|EAZ75205.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
          Length = 166

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           + FTG   K+ +   +E       +V   ++   DI+  G N G  KLEKA + GV I+N
Sbjct: 91  VCFTG-FNKLDKAALKELAANNNMIVRKEVTVYLDILCYGINAGPKKLEKAMEQGVMILN 149

Query: 711 EEQFLFLLQ 719
            EQF  +++
Sbjct: 150 REQFEKMIE 158


>gi|300779659|ref|ZP_07089515.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium
           genitalium ATCC 33030]
 gi|300533769|gb|EFK54828.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium
           genitalium ATCC 33030]
          Length = 959

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIM 709
           + FTG++  + R + +      G  V   + + T +++    D    K  +A++L + I+
Sbjct: 364 IAFTGSMD-VSREEWRTRALSHGLTVGG-VGQNTALLVAANPDTMSRKARRARELNIPIV 421

Query: 710 NEEQFLFLLQ 719
           +E  F  LL 
Sbjct: 422 SELHFSRLLA 431


>gi|168021393|ref|XP_001763226.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685709|gb|EDQ72103.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 865

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 11/90 (12%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEY--VTQLGAVVSAILSRKTDIIIV------GD 692
            +         +V +G   ++ R +      + + G  V+  +      +I       G 
Sbjct: 198 ASGEKPFLGMTIVLSG---RLSRKQGARRADIEKHGGKVANAIKPGVTCVIADARDASGG 254

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722
              +K   A  L + ++ EE     ++Q  
Sbjct: 255 GGSTKSADAISLNIPVVREEWITDCIKQKE 284


>gi|261343355|ref|ZP_05971000.1| conserved hypothetical protein [Providencia rustigianii DSM 4541]
 gi|282568493|gb|EFB74028.1| conserved hypothetical protein [Providencia rustigianii DSM 4541]
          Length = 295

 Score = 47.9 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 15/81 (18%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---------NPGSK 697
           I  K +  TG     +R      + + G  +S  ++  +D +++G          + G K
Sbjct: 205 ISGKAICLTGNFLSGKRSVIASMIEEAGGHISDKVTLTSDYLVIGALSSRDWKYSSHGRK 264

Query: 698 LEKA---QQLG---VKIMNEE 712
           +EKA   +  G   +KI  E+
Sbjct: 265 IEKAIEDRDQGKSIIKITTED 285


>gi|331700439|ref|YP_004397398.1| hypothetical protein Lbuc_0044 [Lactobacillus buchneri NRRL
           B-30929]
 gi|329127782|gb|AEB72335.1| hypothetical protein Lbuc_0044 [Lactobacillus buchneri NRRL
           B-30929]
          Length = 92

 Score = 47.9 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 13/79 (16%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD------NPGSKLEK 700
           + + ++VFTG L  + R +A    +  GA   A ++++TD +IVG        P   L  
Sbjct: 4   LTDMEIVFTGKLASMPRKQAFAVASAFGAFPKAQINKQTDYLIVGAIHKTINEP---LTT 60

Query: 701 AQQL---GVKIMNEEQFLF 716
            ++L    +K + E+ F+ 
Sbjct: 61  -RKLDIPNIKHITEKDFID 78


>gi|290982408|ref|XP_002673922.1| poly(ADP-ribose) synthetase [Naegleria gruberi]
 gi|284087509|gb|EFC41178.1| poly(ADP-ribose) synthetase [Naegleria gruberi]
          Length = 969

 Score = 47.9 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----NPGSKLEKAQQLGVKIMN 710
           +G L  +++ + QE + + GA     +S     ++  +       +K++KA++ GV I++
Sbjct: 289 SGKLS-MKQSELQEIIEENGATFLKDVSSGCTHLVCSESEYDKETTKVKKAKKQGVLIVD 347

Query: 711 EEQFLFL 717
           E+ ++ +
Sbjct: 348 ED-WIHM 353


>gi|269125769|ref|YP_003299139.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
           43183]
 gi|268310727|gb|ACY97101.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
           43183]
          Length = 328

 Score = 47.9 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 28/104 (26%)

Query: 643 VSSEI-ENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD-------- 692
               + +  K+VFTG  + +  R +  +     G  V + +SR T +++  D        
Sbjct: 224 AGGPLVQGMKVVFTG--ETLTPRQELADRAAGAGLNVMSTVSRFTSVLVAADVHAASAKA 281

Query: 693 -----NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
                            GV I++E  FL LLQ     +R+ + +
Sbjct: 282 RRARAE-----------GVPIIDEPTFLRLLQDVRPGVRLDEPE 314


>gi|115944996|ref|XP_001196870.1| PREDICTED: similar to Poly [ADP-ribose] polymerase 1 (PARP-1)
           (ADPRT) (NAD(+) ADP-ribosyltransferase 1)
           (Poly[ADP-ribose] synthetase 1), partial
           [Strongylocentrotus purpuratus]
          Length = 975

 Score = 47.9 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 6/93 (6%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---- 692
              +K     + N  +V  G L K    + +  +  LG  V+  ++ +T  +I  +    
Sbjct: 347 KIVKKPEDKALYNCTIVLHGKLSK-SNKQLKTTIQDLGGEVATKITPETACVISNEAEVK 405

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725
               K+++AQ   V +++E+ FL  ++     L
Sbjct: 406 KMNKKMKEAQSNDVHVVSED-FLDAVKNGGAAL 437


>gi|321467495|gb|EFX78485.1| hypothetical protein DAPPUDRAFT_246317 [Daphnia pulex]
          Length = 71

 Score = 47.9 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           +    +V T  L+ + R +A+  V + G      +S+ T 
Sbjct: 32  LTGLTIVVTSILESLHREEAEGLVKKYGGKAPKAVSKNTT 71


>gi|328953949|ref|YP_004371283.1| Bifunctional protein folD [Desulfobacca acetoxidans DSM 11109]
 gi|328454273|gb|AEB10102.1| Bifunctional protein folD [Desulfobacca acetoxidans DSM 11109]
          Length = 299

 Score = 47.5 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 22/83 (26%)

Query: 663 RHKAQEYVTQLGAV---VSAILSRKTDIIIVGDNPGS------KLEKAQQLG---V---- 706
           R + ++ V  L A    V  +++     I+VG++PGS      K + A +LG   V    
Sbjct: 16  REELKQEVADLKAKHNIVPGLVT-----ILVGEDPGSVSYVTAKQKTAHELGFYSVQDSQ 70

Query: 707 -KIMNEEQFLFLLQQYNTTLRIH 728
              ++E   L L+ +YN   ++H
Sbjct: 71  PPTISEADLLALIDKYNKDPKLH 93


>gi|316976507|gb|EFV59792.1| ATPase, AAA family [Trichinella spiralis]
          Length = 774

 Score = 47.5 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 628 LLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           L +E   ++G  E    +E   +    V +G L+ + R   +  + + G  V+   S+
Sbjct: 142 LQREGPRALGTREIPKGAENCFQGLTFVLSGILETVDREDVKLLIQKYGGRVTGA-SK 198


>gi|189065421|dbj|BAG35260.1| unnamed protein product [Homo sapiens]
          Length = 1014

 Score = 47.5 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 41/93 (44%), Gaps = 19/93 (20%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSA--------ILSR 683
           P+      +    + N K++   TL K+ R   + +  + +LG  ++           ++
Sbjct: 377 PAAVNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCSSTK 433

Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           K    +  +    K+E+ ++  +++++E+ FL 
Sbjct: 434 KE---V--EKMNKKMEEVKEANIRVVSED-FLQ 460


>gi|130782|sp|P11103|PARP1_MOUSE RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
           AltName: Full=NAD(+) ADP-ribosyltransferase 1;
           Short=ADPRT 1; AltName: Full=Poly[ADP-ribose] synthase
           1; Short=msPARP
 gi|49894|emb|CAA32421.1| unnamed protein product [Mus musculus]
          Length = 1013

 Score = 47.5 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 41/92 (44%), Gaps = 17/92 (18%)

Query: 634 PSIGRHEKNVSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAI-------LS-RK 684
           P+           + N K+  T G L +  + +A+  + +LG  ++         +S +K
Sbjct: 377 PTAVNSSAPADKPLSNMKI-LTLGKLSQ-NKDEAKAVIEKLGGKLTGSANKASLCISIKK 434

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
               +  +    K+E+ ++  +++++E+ FL 
Sbjct: 435 E---V--EKMNKKMEEVKEANIRVVSED-FLQ 460


>gi|291531224|emb|CBK96809.1| hypothetical protein EUS_17190 [Eubacterium siraeum 70/3]
          Length = 598

 Score = 47.5 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 49/108 (45%), Gaps = 16/108 (14%)

Query: 625 VEALLKEVSPSIGRHEKNVSSE---IENKKLVFTG-TLQKIQRHKAQEYVTQLGAVV-SA 679
           +  L+ E      +  ++   +   I++K  V TG +LQ+    +   ++ + G  V  +
Sbjct: 493 IRQLVFETKEEFMKKAEDNRHKYAWIKDKVFVHTGLSLQEES--EFDSFIFENGGTVRKS 550

Query: 680 ILSRKTDIIIVGDN---PGSKLEKAQQL-----GVKIMNEEQFLFLLQ 719
            +   TD ++   +      KL KA++L     G++I+  E++  L+ 
Sbjct: 551 TV-LNTDYLVYNADYDHETVKLRKARELKEKGSGIEILTTEEWKKLID 597


>gi|320168213|gb|EFW45112.1| polymerase [Capsaspora owczarzaki ATCC 30864]
          Length = 968

 Score = 47.5 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII------IVGDNPGSKLE 699
             ++  +VF G+     +      V +LG  V+  ++ KT I+      +  +  G K+ 
Sbjct: 342 PFDSMTIVFAGSNFSTTQKALGAIVKELGGAVATNVTDKTTIVISTPEEVANE--GKKIS 399

Query: 700 KAQQLGVKIMNEE 712
            A +  + I++E+
Sbjct: 400 DALERHIPILSED 412


>gi|261329277|emb|CBH12258.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 807

 Score = 47.5 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/320 (8%), Positives = 54/320 (16%), Gaps = 21/320 (6%)

Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY-ANPRNAASGILRRLNPTDITR 234
                 P        V    +            G+             +L       +  
Sbjct: 130 CPLPCHPGPCVPCSAVSGPGSCGCGSTSYTWRCGQPDPLKTCDRFCGKMLSCGKH--LCP 187

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
                    G + +           +    G  V +  +          ++ E      T
Sbjct: 188 DKCHHGACRGCSKQSTTSCHCGSEVRPMRCGSTVFSCGKVCGRELKCGVHHCERMCHEGT 247

Query: 295 LPYDIDG--------------LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLL 340
            P                   +V +          G           HK   K       
Sbjct: 248 CPPCKTDPSVVATCPCGSVPLVVVRTRCSDPVPVCGNVCGRWLDCGEHKCDAKCHEGGCE 307

Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400
               Q+  T          P  +  +   N                +     +       
Sbjct: 308 PCQQQVAATCSCGKTQATLPCLMRRSFRCNKVCKAALSCGKHQCRARCCPARKGNNADAH 367

Query: 401 VLVKRAGEVIPKVVDIIVNERHPDAQP----FSFPSFCPICQSRVVRDLNPKTGKLVAAH 456
              +   + +    + +               S    C      ++      T       
Sbjct: 368 CCRQVCNKKLSCGHNCMELCHRGPCPSCPNVVSERLLCRCGAEELMPPQPCGTKPPQCNR 427

Query: 457 RCTGGLACSAQQLERLKHFV 476
            C+  L C       + HF 
Sbjct: 428 PCSVPLPCGHPTGSHICHFG 447


>gi|84501246|ref|ZP_00999451.1| hypothetical protein OB2597_12813 [Oceanicola batsensis HTCC2597]
 gi|84390537|gb|EAQ03025.1| hypothetical protein OB2597_12813 [Oceanicola batsensis HTCC2597]
          Length = 2095

 Score = 47.5 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 21/44 (47%)

Query: 647  IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            ++ K  V TG +    R    + + + G  +   ++ +TD ++V
Sbjct: 2005 LKGKVFVLTGKMSMGPRSLIGDEIARRGGTLKNTVTDETDYVVV 2048


>gi|213025273|ref|ZP_03339720.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 266

 Score = 47.1 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 80/216 (37%), Gaps = 18/216 (8%)

Query: 206 IAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265
               R    N R+ A+G+L R +       L  F+           +   ++ +    L 
Sbjct: 10  HIQQRMGGMNARSKAAGMLMRQDNASALNSLGIFIWAWPDGPANMPERLSQLAKAGFSLT 69

Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325
              +  V+ A+        +     + S LP+  DG+V ++ +    +          W+
Sbjct: 70  KKYSLAVKDASEVERARQSW-----LTSALPFVTDGVVIRMAKEPASQYWRPGQGD--WL 122

Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385
            + K+       ++  I   +G++G +T VA L PV +    +    +            
Sbjct: 123 AAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI-----------G 171

Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421
                   DI  GD++LV  AG+ IP++ +++   R
Sbjct: 172 SVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSR 207


>gi|227523370|ref|ZP_03953419.1| hypothetical protein HMPREF0519_1079 [Lactobacillus hilgardii ATCC
           8290]
 gi|227089476|gb|EEI24788.1| hypothetical protein HMPREF0519_1079 [Lactobacillus hilgardii ATCC
           8290]
          Length = 93

 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 13/79 (16%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD------NPGSKLEK 700
           + + ++VFTG L  + R +A    +  GA+  A ++++T+ ++VG        P   L  
Sbjct: 4   LTDMEIVFTGKLASMPRKQAFAVASAFGALPKAQVTQQTNYLVVGAIHKTIGEP---LTT 60

Query: 701 AQQLGVK-I--MNEEQFLF 716
            ++L +  I  + E+ F+ 
Sbjct: 61  -RKLDIPDIKHITEKDFID 78


>gi|109018052|ref|XP_001090984.1| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 4 [Macaca
           mulatta]
          Length = 1014

 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 43/92 (46%), Gaps = 17/92 (18%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684
           P+ G    +    + N K++   TL K+ R   + +  + +LG  ++         +S K
Sbjct: 377 PAAGNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 433

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 434 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 460


>gi|297280655|ref|XP_001090628.2| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 1 [Macaca
           mulatta]
          Length = 993

 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 43/92 (46%), Gaps = 17/92 (18%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684
           P+ G    +    + N K++   TL K+ R   + +  + +LG  ++         +S K
Sbjct: 356 PAAGNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 412

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 413 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 439


>gi|209528273|ref|ZP_03276736.1| excinuclease ABC, C subunit [Arthrospira maxima CS-328]
 gi|209491293|gb|EDZ91685.1| excinuclease ABC, C subunit [Arthrospira maxima CS-328]
          Length = 624

 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 34/116 (29%), Gaps = 17/116 (14%)

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF--IFSLGIRH 561
           I +P +   L    +    ++   L          +    + + +       I  LG   
Sbjct: 521 IFVPGESQPLTTHPEQPGVQLLRRLRDEAHRFAVSFHRNQRSKRMKRSHLDDIPGLGHHR 580

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                 + L  ++ S                     L  VP +G+ +A+ I +++ 
Sbjct: 581 Q-----KLLLGHFRSIDYIRMATPT----------QLAEVPGIGEKLARQIYDYFH 621


>gi|332252144|ref|XP_003275213.1| PREDICTED: poly [ADP-ribose] polymerase 1 [Nomascus leucogenys]
          Length = 955

 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 17/92 (18%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684
           P+      +    + N K++   TL K+ R   + +  + +LG  ++         +S K
Sbjct: 377 PTAVDSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 433

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 434 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 460


>gi|6978455|ref|NP_037195.1| poly [ADP-ribose] polymerase 1 [Rattus norvegicus]
 gi|3123251|sp|P27008|PARP1_RAT RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
           AltName: Full=NAD(+) ADP-ribosyltransferase 1;
           Short=ADPRT 1; AltName: Full=Poly[ADP-ribose] synthase 1
 gi|2896792|gb|AAC53544.1| poly(ADP-ribose) polymerase [Rattus norvegicus]
 gi|55250408|gb|AAH85765.1| Poly (ADP-ribose) polymerase 1 [Rattus norvegicus]
 gi|149040870|gb|EDL94827.1| poly (ADP-ribose) polymerase family, member 1 [Rattus norvegicus]
          Length = 1014

 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 634 PSIGRHEKNVSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           P+           + N K+  T G L +  + +A+  + +LG  ++   ++
Sbjct: 378 PTAVNSSAPADKPLSNMKI-LTLGKLSQ-NKDEAKAMIEKLGGKLTGSANK 426


>gi|301782649|ref|XP_002926747.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Ailuropoda
           melanoleuca]
          Length = 1018

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 41/93 (44%), Gaps = 16/93 (17%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684
           P+           + + K++   TL K+ R   + +  + +LG  ++         +S K
Sbjct: 378 PAAVNSSTPPDKPLSSMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 434

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            ++    +    K+E+ ++ G+++++E+    L
Sbjct: 435 KEV----EKMSKKMEEVREAGIRVVSEDFLRDL 463


>gi|124009105|ref|ZP_01693788.1| leucine-rich repeat containing protein [Microscilla marina ATCC
           23134]
 gi|123985319|gb|EAY25239.1| leucine-rich repeat containing protein [Microscilla marina ATCC
           23134]
          Length = 640

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNE---EQFLFLLQQY 721
           + T  ++VG+NP  KL KA ++G+ I+ +   + FL  ++ +
Sbjct: 307 KSTTHLVVGENPKKKLNKALEMGIPIVAQGRLKDFLHTIEDH 348


>gi|229489161|ref|ZP_04383027.1| 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase [Rhodococcus
           erythropolis SK121]
 gi|229324665|gb|EEN90420.1| 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase [Rhodococcus
           erythropolis SK121]
          Length = 264

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 29/90 (32%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ- 703
           + +E K +V TG    I R  AQ      GA V          ++   +P     +A++ 
Sbjct: 2   NRLEGKNVVITGAASGIGRAAAQLMA-AEGAKV----------LVADLDP----ARAEEA 46

Query: 704 -------------LGVKIMNEEQFLFLLQQ 720
                         GV +MNE+    ++++
Sbjct: 47  AVAIRETGGNAMGFGVDVMNEDSLAAMIEK 76


>gi|169598892|ref|XP_001792869.1| hypothetical protein SNOG_02255 [Phaeosphaeria nodorum SN15]
 gi|160704493|gb|EAT90467.2| hypothetical protein SNOG_02255 [Phaeosphaeria nodorum SN15]
          Length = 669

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 8/89 (8%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN----PGSKLEKA 701
            ++   +  +G      +      +T LGA  S+ ++  T+I+I  +       +K++ A
Sbjct: 14  PLDGCVIATSGKFPGTTQTALASRITSLGATASSKVTSDTNILIATEKDYESNSTKVKAA 73

Query: 702 QQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730
               + ++     L  L++  +T    D+
Sbjct: 74  ASHDIPVVT----LDWLEECESTDAKVDE 98


>gi|32396668|gb|AAP49292.1| NAD-dependent DNA ligase [Bacillus sp. IMG-2]
          Length = 121

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 214 ANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
           ANPRNA++G LR+L+P     R L+ FV+ + +  +       E L  +  LGF  N   
Sbjct: 1   ANPRNASAGSLRQLDPKIAAKRNLDIFVYNIAELGDTGVSSHSEALDLLDELGFKTNRER 60

Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
           R+      ++   +++    S LPYDIDG+V KVD    Q+ LG  A+SPRW I++KF  
Sbjct: 61  RKCKNIDEVIELLDQLLEKHSQLPYDIDGVVIKVDSLRQQEALGATAKSPRWAIAYKFPA 120

Query: 333 K 333
           +
Sbjct: 121 E 121


>gi|115479373|ref|NP_001063280.1| Os09g0440200 [Oryza sativa Japonica Group]
 gi|51091406|dbj|BAD36149.1| unknown protein [Oryza sativa Japonica Group]
 gi|113631513|dbj|BAF25194.1| Os09g0440200 [Oryza sativa Japonica Group]
          Length = 548

 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
                   +  TG L K  R + +E   ++G   S  L  K   ++V    G K E A +
Sbjct: 51  DGPFAGLVICVTG-LSKEARTQVKEATERMGGEYSGSLHPKCTHLVVQSFAGRKFEHAVK 109

Query: 704 LG 705
            G
Sbjct: 110 HG 111


>gi|255521960|ref|ZP_05389197.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J1-175]
          Length = 34

 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEY 48
          +K    L   +  +   YY    P + D+EY
Sbjct: 4  KKRYEELINILDQYSYDYYVIDNPTVEDAEY 34


>gi|312144274|ref|YP_003995720.1| DNA integrity scanning, DisA, linker region [Halanaerobium sp.
           'sapolanicus']
 gi|311904925|gb|ADQ15366.1| DNA integrity scanning, DisA, linker region [Halanaerobium sp.
           'sapolanicus']
          Length = 359

 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/190 (11%), Positives = 56/190 (29%), Gaps = 2/190 (1%)

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           + +          +              +    ++ ++S        +  Q  +     +
Sbjct: 169 TNLSALEFEDLVTVSDVVTVIQRTEMVLKIQREIEKYISELGSEGRLIKMQLEELVSNVK 228

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558
           +    +        L+         +E++            ++I+K    S     F   
Sbjct: 229 EEGLLLIEDYISEELEEDLTHPEAVLESL-TDWSSDEILTLNTISKALGYSGSVNAFDES 287

Query: 559 IRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           +   G  I + + +      +N   E  ++ A        L  V  +G++ AQAI +  +
Sbjct: 288 VSPRGYRILKKIPRLPMPVIENLVDEFKDLQAIIRASADELDDVDGIGEVRAQAIKDGLR 347

Query: 618 NPRNICAVEA 627
             R+   ++ 
Sbjct: 348 RLRDQVLLDR 357


>gi|229587518|ref|YP_002860556.1| hypothetical protein CLJ_0249 [Clostridium botulinum Ba4 str.
          657]
 gi|229260200|gb|ACQ51237.1| hypothetical protein CLJ_0249 [Clostridium botulinum Ba4 str.
          657]
          Length = 125

 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 24/53 (45%)

Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
           +   + ++   +++  H   YY+ +  +I D  YD   R  + +   +PDL 
Sbjct: 30 KKAIIELINKRRRQVLVHSCTYYRLNDSLIDDYTYDKWARELENLQDMYPDLL 82


>gi|297661826|ref|XP_002809428.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 1 [Pongo
           abelii]
          Length = 970

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 17/92 (18%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684
           P+      +    + N K++   TL K+ R   + +  + +LG  ++         +S K
Sbjct: 333 PAAVNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 389

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 390 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 416


>gi|126433476|ref|YP_001069167.1| AAA ATPase [Mycobacterium sp. JLS]
 gi|126233276|gb|ABN96676.1| AAA ATPase [Mycobacterium sp. JLS]
          Length = 782

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 652 LVFTGTLQKIQ-----RHKAQEYVTQLGAVVSAILSRKTDI-IIVGDNPGS---KLEKAQ 702
           + FTGT          R + +      G      ++ KT   ++V    G+   K  KAQ
Sbjct: 701 ICFTGTALDPSGRVVEREEIERMAEAAGLKPVRSVT-KTRCEVLVTAEAGTQSGKARKAQ 759

Query: 703 QLGVKIMNEEQFLFLL 718
           + G  +   E+F   L
Sbjct: 760 EYGKPVFTAEEFFAWL 775


>gi|108797836|ref|YP_638033.1| ATPas [Mycobacterium sp. MCS]
 gi|119866930|ref|YP_936882.1| AAA ATPase [Mycobacterium sp. KMS]
 gi|108768255|gb|ABG06977.1| ATPase [Mycobacterium sp. MCS]
 gi|119693019|gb|ABL90092.1| AAA ATPase [Mycobacterium sp. KMS]
          Length = 782

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 652 LVFTGTLQKIQ-----RHKAQEYVTQLGAVVSAILSRKTDI-IIVGDNPGS---KLEKAQ 702
           + FTGT          R + +      G      ++ KT   ++V    G+   K  KAQ
Sbjct: 701 ICFTGTALDPSGRVVEREEIERMAEAAGLKPVRSVT-KTRCEVLVTAEAGTQSGKARKAQ 759

Query: 703 QLGVKIMNEEQFLFLL 718
           + G  +   E+F   L
Sbjct: 760 EYGKPVFTAEEFFAWL 775


>gi|17380223|sp|Q9R152|PARP1_CRIGR RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
           AltName: Full=NAD(+) ADP-ribosyltransferase 1;
           Short=ADPRT 1; AltName: Full=Poly[ADP-ribose] synthase 1
 gi|5616520|gb|AAD45817.1|AF168781_1 poly ADP-ribose polymerase [Cricetulus griseus]
          Length = 1013

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 15/82 (18%)

Query: 643 VSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKTDIIIVGDNP 694
               + N K+  T G L +  + +A+  + +LG  ++         +S K ++    +  
Sbjct: 386 ADKPLSNMKI-LTLGKLSQ-SKDEAKATIEKLGGKLTGSANNASLCISTKKEV----EKM 439

Query: 695 GSKLEKAQQLGVKIMNEEQFLF 716
           G K+E+ Q   V+++ E+ FL 
Sbjct: 440 GKKMEEVQAANVRVVCED-FLQ 460


>gi|190267|gb|AAA60155.1| poly(ADP-ribose) polymerase [Homo sapiens]
          Length = 1014

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 17/92 (18%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684
           P+      +    + N K++   TL K+ R   + +  + +LG  ++         +S K
Sbjct: 377 PAAVNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 433

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 434 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 460


>gi|297661828|ref|XP_002809429.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 2 [Pongo
           abelii]
          Length = 951

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 17/92 (18%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684
           P+      +    + N K++   TL K+ R   + +  + +LG  ++         +S K
Sbjct: 314 PAAVNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 370

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 371 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 397


>gi|281354063|gb|EFB29647.1| hypothetical protein PANDA_016433 [Ailuropoda melanoleuca]
          Length = 981

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 41/93 (44%), Gaps = 16/93 (17%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684
           P+           + + K++   TL K+ R   + +  + +LG  ++         +S K
Sbjct: 341 PAAVNSSTPPDKPLSSMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 397

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717
            ++    +    K+E+ ++ G+++++E+    L
Sbjct: 398 KEV----EKMSKKMEEVREAGIRVVSEDFLRDL 426


>gi|190167|gb|AAA60137.1| poly(ADP-ribose) polymerase [Homo sapiens]
          Length = 1014

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 17/92 (18%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684
           P+      +    + N K++   TL K+ R   + +  + +LG  ++         +S K
Sbjct: 377 PAAVNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 433

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 434 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 460


>gi|168270914|dbj|BAG10250.1| poly [ADP-ribose] polymerase-1 [synthetic construct]
          Length = 1014

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 17/92 (18%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684
           P+      +    + N K++   TL K+ R   + +  + +LG  ++         +S K
Sbjct: 377 PAAVNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 433

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 434 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 460


>gi|22902366|gb|AAH37545.1| Poly (ADP-ribose) polymerase 1 [Homo sapiens]
 gi|123996301|gb|ABM85752.1| poly (ADP-ribose) polymerase family, member 1 [synthetic construct]
          Length = 1014

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 17/92 (18%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684
           P+      +    + N K++   TL K+ R   + +  + +LG  ++         +S K
Sbjct: 377 PAAVNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 433

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 434 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 460


>gi|156523968|ref|NP_001609.2| poly [ADP-ribose] polymerase 1 [Homo sapiens]
 gi|130781|sp|P09874|PARP1_HUMAN RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
           AltName: Full=NAD(+) ADP-ribosyltransferase 1;
           Short=ADPRT 1; AltName: Full=Poly[ADP-ribose] synthase 1
 gi|21693601|gb|AAM75364.1|AF524947_1 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) [Homo
           sapiens]
 gi|178190|gb|AAA51663.1| NAD+ ADP-ribosyltransferase [Homo sapiens]
 gi|55663671|emb|CAH70215.1| poly (ADP-ribose) polymerase 1 [Homo sapiens]
 gi|55959449|emb|CAI12102.1| poly (ADP-ribose) polymerase 1 [Homo sapiens]
 gi|119590189|gb|EAW69783.1| poly (ADP-ribose) polymerase family, member 1, isoform CRA_a [Homo
           sapiens]
 gi|119590190|gb|EAW69784.1| poly (ADP-ribose) polymerase family, member 1, isoform CRA_a [Homo
           sapiens]
          Length = 1014

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 17/92 (18%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684
           P+      +    + N K++   TL K+ R   + +  + +LG  ++         +S K
Sbjct: 377 PAAVNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 433

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 434 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 460


>gi|311068875|ref|YP_003973798.1| hypothetical protein BATR1942_09670 [Bacillus atrophaeus 1942]
 gi|310869392|gb|ADP32867.1| hypothetical protein BATR1942_09670 [Bacillus atrophaeus 1942]
          Length = 100

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 22/50 (44%)

Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
          +   + +    ++I  H   YYQ ++ II D  +D   +    +   +P+
Sbjct: 3  KDILELIGRRRRQILVHSFLYYQLNENIIADHTFDLWSKELVQLQEKYPE 52


>gi|123981466|gb|ABM82562.1| poly (ADP-ribose) polymerase family, member 1 [synthetic construct]
          Length = 1014

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 17/92 (18%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684
           P+      +    + N K++   TL K+ R   + +  + +LG  ++         +S K
Sbjct: 377 PAAVNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 433

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 434 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 460


>gi|194382466|dbj|BAG64403.1| unnamed protein product [Homo sapiens]
          Length = 993

 Score = 46.7 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 17/92 (18%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684
           P+      +    + N K++   TL K+ R   + +  + +LG  ++         +S K
Sbjct: 356 PAAVNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 412

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 413 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 439


>gi|337424|gb|AAB59447.1| poly(ADP-ribose) synthetase [Homo sapiens]
          Length = 1014

 Score = 46.7 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 17/92 (18%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684
           P+      +    + N K++   TL K+ R   + +  + +LG  ++         +S K
Sbjct: 377 PAAVNSSASADKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK 433

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
            ++    +    K+E+ ++  +++++E+ FL 
Sbjct: 434 KEV----EKMNKKMEEVKEANIRVVSED-FLQ 460


>gi|294055836|ref|YP_003549494.1| excinuclease ABC C subunit domain protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615169|gb|ADE55324.1| excinuclease ABC C subunit domain protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 490

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
             + +G     +L K++ S     +           D  ++ +V  +G   A+ +VEF Q
Sbjct: 439 DFKGLGPTKRMALLKHFGSLDKLRKA----------DAEAITQVEGIGPKTAKGLVEFLQ 488


>gi|15927574|ref|NP_375107.1| ATP-dependent helicase [Staphylococcus aureus subsp. aureus N315]
 gi|29028621|ref|NP_803310.1| Pol III-like ATP dependent helicase [Staphylococcus phage phi 12]
 gi|30043986|ref|NP_835521.1| probable ATP-dependent helicase [Staphylococcus phage phiN315]
 gi|87161004|ref|YP_494621.1| putative exonuclease [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195288|ref|YP_500092.1| exonuclease family protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|118725058|ref|YP_908794.1| probable ATP-dependent helicase [Staphylococcus phage phiNM3]
 gi|151222134|ref|YP_001332956.1| phage exonuclease [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161510224|ref|YP_001575883.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253315032|ref|ZP_04838245.1| putative exonuclease [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253729784|ref|ZP_04863949.1| DNA polymerase III epsilon subunit family exonuclease
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|258413674|ref|ZP_05681948.1| phage exonuclease [Staphylococcus aureus A9763]
 gi|258425109|ref|ZP_05687979.1| phage exonuclease [Staphylococcus aureus A9635]
 gi|258434316|ref|ZP_05688717.1| exonuclease family protein [Staphylococcus aureus A9299]
 gi|258447837|ref|ZP_05695972.1| phage exonuclease [Staphylococcus aureus A6224]
 gi|258452362|ref|ZP_05700372.1| ATP-dependent helicase [Staphylococcus aureus A5948]
 gi|282917349|ref|ZP_06325104.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus D139]
 gi|282928799|ref|ZP_06336392.1| exodeoxyribonuclease [Staphylococcus aureus A10102]
 gi|283771164|ref|ZP_06344055.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus H19]
 gi|294849552|ref|ZP_06790294.1| exodeoxyribonuclease [Staphylococcus aureus A9754]
 gi|295428583|ref|ZP_06821210.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297589943|ref|ZP_06948583.1| exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|13701793|dbj|BAB43086.1| probable ATP-dependent helicase [Staphylococcus aureus subsp.
           aureus N315]
 gi|18920545|gb|AAL82285.1| Pol III-like ATP dependent helicase [Staphylococcus phage phi 12]
 gi|87126978|gb|ABD21492.1| putative exonuclease [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202846|gb|ABD30656.1| exonuclease family [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|104641823|gb|ABF73165.1| probable ATP-dependent helicase [Staphylococcus phage phiNM3]
 gi|150374934|dbj|BAF68194.1| phage exonuclease [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160369033|gb|ABX30004.1| possible exodeoxyribonuclease [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253726519|gb|EES95248.1| DNA polymerase III epsilon subunit family exonuclease
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|257839627|gb|EEV64097.1| phage exonuclease [Staphylococcus aureus A9763]
 gi|257844692|gb|EEV68736.1| phage exonuclease [Staphylococcus aureus A9635]
 gi|257849264|gb|EEV73245.1| exonuclease family protein [Staphylococcus aureus A9299]
 gi|257858934|gb|EEV81802.1| phage exonuclease [Staphylococcus aureus A6224]
 gi|257859949|gb|EEV82787.1| ATP-dependent helicase [Staphylococcus aureus A5948]
 gi|269941473|emb|CBI49870.1| putative phage exonuclease [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282318976|gb|EFB49331.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus D139]
 gi|282589534|gb|EFB94622.1| exodeoxyribonuclease [Staphylococcus aureus A10102]
 gi|283459758|gb|EFC06849.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus H19]
 gi|285817684|gb|ADC38171.1| Pol III-like ATP dependent helicase, phage associated
           [Staphylococcus phage phiN315]
 gi|294823689|gb|EFG40116.1| exodeoxyribonuclease [Staphylococcus aureus A9754]
 gi|295127565|gb|EFG57204.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297577071|gb|EFH95785.1| exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|312830370|emb|CBX35212.1| exonuclease family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315196784|gb|EFU27129.1| possible exodeoxyribonuclease [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320143661|gb|EFW35439.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329724440|gb|EGG60950.1| exonuclease [Staphylococcus aureus subsp. aureus 21189]
          Length = 310

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 15/98 (15%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691
               ++V   +++K +VFTG     +         + GA + + ++ KTDI++ G     
Sbjct: 214 KIEVESVIPILKDKNVVFTGNFDTEK-QDLMILTRKKGAYIRSDVTAKTDILVEGVQDDK 272

Query: 692 --DNPG--SKLEKAQQL-----GVKIMNEEQFLFLLQQ 720
             D  G  SK  KA++       ++ +NEE  + L+++
Sbjct: 273 YKDVNGLVSKQRKAREYVGNGAKIQFLNEEDLINLIKE 310


>gi|120402192|ref|YP_952021.1| AAA ATPase [Mycobacterium vanbaalenii PYR-1]
 gi|119955010|gb|ABM12015.1| AAA ATPase [Mycobacterium vanbaalenii PYR-1]
          Length = 782

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 649 NKKLVFTGTLQKIQ-----RHKAQEYVTQLGAVVSAILSR-KTDIII---VGDNPGSKLE 699
             ++ FTGT Q        R + +   T  G      +S+ + D+++    G   G K  
Sbjct: 701 GVRICFTGTAQDPSGRIVERDEIERLATAAGLTPVKTVSKTRCDVLVTAEAGTQSG-KAR 759

Query: 700 KAQQLGVKIMNEEQFLFLL 718
           KA + G  +   ++F   L
Sbjct: 760 KAMEYGKPVFTADEFFAWL 778


>gi|49484243|ref|YP_041467.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242372|emb|CAG41084.1| putative exonuclease [Staphylococcus aureus subsp. aureus MRSA252]
          Length = 310

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 15/98 (15%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691
               ++V   +++K +VFTG     +         + GA + + ++ KTDI++ G     
Sbjct: 214 KIEVESVIPILKDKNVVFTGNFDTEK-QDLMILTRKKGAYIRSDVTAKTDILVEGVQDDK 272

Query: 692 --DNPG--SKLEKAQQL-----GVKIMNEEQFLFLLQQ 720
             D  G  SK  KA++       ++ +NEE  + L+++
Sbjct: 273 YKDVNGLVSKQRKAREYVGNGAKIQFLNEEDLINLIKE 310


>gi|153952796|ref|YP_001393561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium kluyveri DSM
           555]
 gi|219853461|ref|YP_002470583.1| hypothetical protein CKR_0118 [Clostridium kluyveri NBRC 12016]
 gi|189028986|sp|A5N4I2|MURC_CLOK5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765992|sp|B9DY44|MURC_CLOK1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146345677|gb|EDK32213.1| MurC [Clostridium kluyveri DSM 555]
 gi|219567185|dbj|BAH05169.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 457

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 11/75 (14%)

Query: 664 HKAQEYVTQLGAVV-----SAILSRKTDIIIVGDNPGSK----LEKAQQLGVKIMNEEQF 714
            +A E +   GA V     S  ++   D+++      SK    L KA+ L + +M+  +F
Sbjct: 43  SEATERLELKGAKVYIGQISQNITSDIDLVVY-TAAISKNNEELLKAKDLNIPLMDRAEF 101

Query: 715 L-FLLQQYNTTLRIH 728
           L  +++ +   + + 
Sbjct: 102 LGEIMKGHKYNIAVS 116


>gi|149641631|ref|XP_001514646.1| PREDICTED: similar to Poly [ADP-ribose] polymerase 1 (PARP-1)
           (ADPRT) (NAD(+) ADP-ribosyltransferase 1)
           (Poly[ADP-ribose] synthetase 1) [Ornithorhynchus
           anatinus]
          Length = 972

 Score = 46.3 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 40/87 (45%), Gaps = 21/87 (24%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRH--KAQEYVTQLGAVVSAI-------LS--RKTDIII 689
                 + N K++   TL K+ R+  + +  + +LG  ++         +S  ++     
Sbjct: 342 VPADKPLSNMKIL---TLGKLSRNKEEMKATIEELGGKLTGSANKASLCISTQKEV---- 394

Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLF 716
             +    K+E+ ++ GV++++E +FL 
Sbjct: 395 --EKMNKKMEEVKEAGVRVVSE-EFLK 418


>gi|262283367|ref|ZP_06061133.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
 gi|262260858|gb|EEY79558.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
          Length = 77

 Score = 46.3 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 18/76 (23%)

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--------DNPGSK--------LEKAQQL 704
           + R++A  ++T+ GA+V   +S +T I++ G         +  SK        LE+ Q+ 
Sbjct: 1   MTRNEAVAFLTERGAIVQGYVSAQTQILVAGHKQLDLFKPDRRSKKYEAVLKRLEEGQE- 59

Query: 705 GVKIMNEEQFLFLLQQ 720
            + I++EE F  ++++
Sbjct: 60  -ITILSEESFFTIVKE 74


>gi|39947634|ref|XP_363029.1| hypothetical protein MGG_08613 [Magnaporthe oryzae 70-15]
 gi|145010234|gb|EDJ94890.1| hypothetical protein MGG_08613 [Magnaporthe oryzae 70-15]
          Length = 733

 Score = 46.3 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 23/43 (53%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
           +E+  +  +G    + + + ++ +T LG  VS  ++ KT  +I
Sbjct: 28  LEDCVVAISGAFPNLTQAQTKDKITSLGGTVSPSVNNKTTHLI 70


>gi|239995979|ref|ZP_04716503.1| Holliday junction DNA helicase motor protein [Alteromonas macleodii
           ATCC 27126]
          Length = 206

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 12/96 (12%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
                 + +  N+D  +L+ +P +G   A+ +V        +   + L K          
Sbjct: 93  MSASQFLASVQNEDVSALVSLPGIGKKTAERLV--------VELKDRLAKFGKAQSIAVP 144

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676
                 +    +V         R +AQ  +  LG  
Sbjct: 145 PPSGDLLSTNTIVA----VNDAREEAQSALIALGYK 176


>gi|72161118|ref|YP_288775.1| exonuclease [Thermobifida fusca YX]
 gi|71914850|gb|AAZ54752.1| exonuclease [Thermobifida fusca YX]
          Length = 516

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL--VFTGTLQKIQ 662
           G + A  + E  +  +N+  V  L+ ++  +    +   +  ++  ++  V  G  +++ 
Sbjct: 300 GVVTAAELRELQRAAKNLA-VSHLISDLEEAAAAEKARRNGPLKGWRILPV--GEGKELT 356

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GSKLEKAQQLGVKIMNEEQFLFLL 718
                +Y    GA V+A +++   ++I  D    +K  +A++ GV I+  ++   LL
Sbjct: 357 --DVMDYAVDHGAKVAANVTKTVRLVIAPDGVETTKTAQARERGVPILTPKEAWTLL 411


>gi|157364326|ref|YP_001471093.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Thermotoga lettingae TMO]
 gi|157314930|gb|ABV34029.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotoga lettingae TMO]
          Length = 180

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 13/97 (13%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
            + +   I  N+  +  L+ +P +G   A++I+++ ++     ++E L           E
Sbjct: 43  RKTVQFPIDINSATYEELLEIPGIGPAKARSILDYRESNGPFQSIEDLTNVSGIGRATAE 102

Query: 641 KNVS------SEIENKKLVFTGTLQKIQRHKAQEYVT 671
           K  S      +  ENKK+        I R   ++   
Sbjct: 103 KMASFVDLKYNSFENKKV-------NINRADLEKLSE 132


>gi|307700344|ref|ZP_07637384.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
 gi|307614555|gb|EFN93784.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
          Length = 744

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 649 NKKLVFTGT--LQK--IQRHKAQEYVTQLGAVVSAILSR-KTDIIIVGDNP--GSKLEKA 701
             ++ FTGT  L     +R + +E     G      +++ + D ++  D     +K + A
Sbjct: 665 GVRICFTGTAMLDGVVYEREEMEEIAWAAGFHPVNNVTKTRCDCLVAADVATMSNKAKNA 724

Query: 702 QQLGVKIMNEEQFLFLLQ 719
            + G  +++ E FL  + 
Sbjct: 725 ARWGKPVISAEDFLHFVN 742


>gi|269977450|ref|ZP_06184422.1| AAA ATPase [Mobiluncus mulieris 28-1]
 gi|306819096|ref|ZP_07452810.1| tetratricopeptide (TPR) domain protein [Mobiluncus mulieris ATCC
           35239]
 gi|269934366|gb|EEZ90928.1| AAA ATPase [Mobiluncus mulieris 28-1]
 gi|304648072|gb|EFM45383.1| tetratricopeptide (TPR) domain protein [Mobiluncus mulieris ATCC
           35239]
          Length = 744

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 649 NKKLVFTGT--LQK--IQRHKAQEYVTQLGAVVSAILSR-KTDIIIVGDNP--GSKLEKA 701
             ++ FTGT  L     +R + +E     G      +++ + D ++  D     +K + A
Sbjct: 665 GVRICFTGTAMLDGVVYEREEMEEIAWAAGFHPVNNVTKTRCDCLVAADVATMSNKAKNA 724

Query: 702 QQLGVKIMNEEQFLFLLQ 719
            + G  +++ E FL  + 
Sbjct: 725 ARWGKPVISAEDFLHFVN 742


>gi|227875815|ref|ZP_03993941.1| AAA ATPase [Mobiluncus mulieris ATCC 35243]
 gi|227843563|gb|EEJ53746.1| AAA ATPase [Mobiluncus mulieris ATCC 35243]
          Length = 744

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 649 NKKLVFTGT--LQK--IQRHKAQEYVTQLGAVVSAILSR-KTDIIIVGDNP--GSKLEKA 701
             ++ FTGT  L     +R + +E     G      +++ + D ++  D     +K + A
Sbjct: 665 GVRICFTGTAMLDGVVYEREEMEEIAWAAGFHPVNNVTKTRCDCLVAADVATMSNKAKNA 724

Query: 702 QQLGVKIMNEEQFLFLLQ 719
            + G  +++ E FL  + 
Sbjct: 725 ARWGKPVISAEDFLHFVN 742


>gi|298706162|emb|CBJ49090.1| expressed unknown protein [Ectocarpus siliculosus]
          Length = 306

 Score = 45.6 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 8/74 (10%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP----GSKLEKAQ 702
           ++ K    TG L    R + Q  +   GA VSAI+ ++   ++   +       K+ KA 
Sbjct: 11  LQGKVFGLTGELA---RKELQPMLKAHGATVSAIIHKRVSFVLCTPDAVKYNTQKVRKAL 67

Query: 703 QLGVKIMNEEQFLF 716
           + G+ +++ + F+ 
Sbjct: 68  KHGIPLVS-QGFIA 80


>gi|320165686|gb|EFW42585.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 2504

 Score = 45.6 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 637 GRHEKNVSSEIENKKLVFTG--TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
           G     +     N+  V TG  +L      + +  + + G  V+  ++R T  +++G +
Sbjct: 865 GVKNTALDPPFYNQIFVLTGFFSLSSW---QLEAMIVEYGGKVAQAVTRTTTHLLLGAS 920


>gi|157130592|ref|XP_001661932.1| poly [adp-ribose] polymerase [Aedes aegypti]
 gi|108871855|gb|EAT36080.1| poly [adp-ribose] polymerase [Aedes aegypti]
          Length = 999

 Score = 45.6 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 8/85 (9%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691
               K     +   + V  G      + + +E + +LG  VS+ ++  T   I+      
Sbjct: 379 EPKIKREKPPLYELQFVILGKTAT-PKDELKEKILKLGGKVSSKIT-NTTAAIISTPDEV 436

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLF 716
           +  GS++++A+ L ++++  E FL 
Sbjct: 437 ERMGSRMQEAKDLQIQVV-PEDFLE 460


>gi|309389959|gb|ADO77839.1| DNA integrity scanning, DisA, linker region [Halanaerobium
           praevalens DSM 2228]
          Length = 359

 Score = 45.6 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 21/192 (10%), Positives = 55/192 (28%), Gaps = 6/192 (3%)

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           + +          L              +    ++ ++S        +  Q  +     +
Sbjct: 169 TNLGALEFEDLVTLSDVVTVIQRTEMVLKIQREIEKYISELGSEGRLIKMQLEELVNNVK 228

Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL- 557
                +        L+         +EN+  +       +       + +     + +L 
Sbjct: 229 KEGILLIEDYISEELEEDTSDPEEVLENLTDWSS---DEILTLNTISKALGYSGSVNALE 285

Query: 558 -GIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
             +   G  I R + +      +N  +   N+ A        L  V  +G++ AQAI + 
Sbjct: 286 ETVSPRGYRIMRKIPRLPMPVIENLVEHFENLQAIIRASVDDLDDVDGIGEVRAQAIKDG 345

Query: 616 YQNPRNICAVEA 627
            +  R+   ++ 
Sbjct: 346 LRRLRDQVLLDR 357


>gi|308179139|ref|YP_003918545.1| exonuclease [Arthrobacter arilaitensis Re117]
 gi|307746602|emb|CBT77574.1| putative exonuclease [Arthrobacter arilaitensis Re117]
          Length = 467

 Score = 45.6 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 17/92 (18%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII-VGDNP---- 694
             +   E+  + L  TG  + + R +A +     GA V    +RKT I++   +NP    
Sbjct: 208 NADPEHELFGQGLTITGGFELLGRREAFQLAASFGASVQLSTTRKTTILVICDENPHAPG 267

Query: 695 ------GSKLEKAQQL------GVKIMNEEQF 714
                  +K  KA +        ++IM+E +F
Sbjct: 268 FDLRHGTTKARKAHEYITERAQQIRIMSETEF 299


>gi|326429630|gb|EGD75200.1| poly polymerase [Salpingoeca sp. ATCC 50818]
          Length = 899

 Score = 45.6 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----NPGSKLEK- 700
           E++       GT     R + +  + + G  VS   S +   II G+     P +K  K 
Sbjct: 237 ELKGMTFKLIGTFST-PRKELEATIAEHGGAVSNK-SAEITHIIAGEKEIAKPKTKRTKA 294

Query: 701 ---AQQLGVKIMNEE 712
              A   GV IM EE
Sbjct: 295 YKQAAATGVPIMKEE 309


>gi|307352953|ref|YP_003894004.1| helicase domain-containing protein [Methanoplanus petrolearius DSM
           11571]
 gi|307156186|gb|ADN35566.1| helicase domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 766

 Score = 45.6 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 10/57 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
               +G + AR L  ++ S Q+              +   L  VP +GD IA+++ E
Sbjct: 713 SFPSIGPKNARDLLDHFGSIQDIMNA----------NIEELKVVPGIGDKIAKSVFE 759


>gi|227821159|ref|YP_002825129.1| superfamily I DNA and RNA helicases and helicasesubunits-like
           protein [Sinorhizobium fredii NGR234]
 gi|227340158|gb|ACP24376.1| superfamily I DNA and RNA helicases and helicasesubunits-like
           protein [Sinorhizobium fredii NGR234]
          Length = 302

 Score = 45.6 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 9/62 (14%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII-IVGDNP--------GSKLEKAQ 702
            V TG      R      +   G    + + R T+ + +  +          G K+ KA 
Sbjct: 220 FVLTGKFTLGPRKAIHGMIADRGGDFKSSVCRNTNYLCVAAEASRDWRHSHEGLKIMKAI 279

Query: 703 QL 704
           +L
Sbjct: 280 EL 281


>gi|300175111|emb|CBK20422.2| unnamed protein product [Blastocystis hominis]
          Length = 165

 Score = 45.6 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 647 IENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           ++    V TG L K     +  + +   G V    +S KT+ ++ G
Sbjct: 74  LDGLVFVVTG-LSKYLTVQEISDLIFDHGGVERTAVSGKTNYLVAG 118


>gi|300900188|ref|ZP_07118377.1| hypothetical protein HMPREF9552_04248 [Escherichia coli MS 198-1]
 gi|300356303|gb|EFJ72173.1| hypothetical protein HMPREF9552_04248 [Escherichia coli MS 198-1]
          Length = 130

 Score = 45.6 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 11/134 (8%)

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            +        L      +  K+  +   G    + +   I + +++ L   +F+ GI  V
Sbjct: 5   LVEKCYVQKPLDMF-SMTAGKLTGLDQSGPKLASIICRGIEQAKDVQLGELLFACGIYGV 63

Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
             E A  LAK + + +                  SL+   L+ + +A     F+++P N+
Sbjct: 64  EEEEAWLLAKRFSNLEALYGA----------SIDSLMSYNLLNEAVAVNTYNFFRHPLNV 113

Query: 623 CAVEALLKEVSPSI 636
            A+  L  E    +
Sbjct: 114 SALNELQTEGGLKV 127


>gi|74144748|dbj|BAE27352.1| unnamed protein product [Mus musculus]
          Length = 1014

 Score = 45.2 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 634 PSIGRHEKNVSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           P+           + N K+  T G L +  + +A+  + +LG  ++   ++
Sbjct: 378 PTAVNSSAPADKPLSNMKI-LTLGKLSQ-NKDEAKAVIEKLGGKLTGSANK 426


>gi|74142035|dbj|BAE41080.1| unnamed protein product [Mus musculus]
          Length = 1014

 Score = 45.2 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 634 PSIGRHEKNVSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           P+           + N K+  T G L +  + +A+  + +LG  ++   ++
Sbjct: 378 PTAVNSSAPADKPLSNMKI-LTLGKLSQ-NKDEAKAVIEKLGGKLTGSANK 426


>gi|20806109|ref|NP_031441.2| poly [ADP-ribose] polymerase 1 [Mus musculus]
 gi|15080598|gb|AAH12041.1| Poly (ADP-ribose) polymerase family, member 1 [Mus musculus]
 gi|26326859|dbj|BAC27173.1| unnamed protein product [Mus musculus]
 gi|26353740|dbj|BAC40500.1| unnamed protein product [Mus musculus]
 gi|148681205|gb|EDL13152.1| poly (ADP-ribose) polymerase family, member 1 [Mus musculus]
          Length = 1014

 Score = 45.2 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 634 PSIGRHEKNVSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           P+           + N K+  T G L +  + +A+  + +LG  ++   ++
Sbjct: 378 PTAVNSSAPADKPLSNMKI-LTLGKLSQ-NKDEAKAVIEKLGGKLTGSANK 426


>gi|74198526|dbj|BAE39743.1| unnamed protein product [Mus musculus]
          Length = 1014

 Score = 45.2 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 634 PSIGRHEKNVSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           P+           + N K+  T G L +  + +A+  + +LG  ++   ++
Sbjct: 378 PTAVNSSAPADKPLSNMKI-LTLGKLSQ-NKDEAKAVIEKLGGKLTGSANK 426


>gi|74141622|dbj|BAE38574.1| unnamed protein product [Mus musculus]
          Length = 1014

 Score = 45.2 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 634 PSIGRHEKNVSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           P+           + N K+  T G L +  + +A+  + +LG  ++   ++
Sbjct: 378 PTAVNSSAPADKPLSNMKI-LTLGKLSQ-NKDEAKAVIEKLGGKLTGSANK 426


>gi|74214619|dbj|BAE31150.1| unnamed protein product [Mus musculus]
          Length = 973

 Score = 45.2 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 634 PSIGRHEKNVSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           P+           + N K+  T G L +  + +A+  + +LG  ++   ++
Sbjct: 378 PTAVNSSAPADKPLSNMKI-LTLGKLSQ-NKDEAKAVIEKLGGKLTGSANK 426


>gi|312219647|emb|CBX99590.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1667

 Score = 45.2 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN----PGSKLEKAQQLGVKIMN 710
           +G      +   Q  +  LGA V+  ++  T ++I  D        K++ A+   + I++
Sbjct: 25  SGKFAGTTQAAVQARIKTLGATVAPSVTADTTLLIATDKDFESNSVKVKAARAHHIPIVS 84

Query: 711 EEQFLFLLQQYNTTLRIHDD 730
               L  L++  +T    D+
Sbjct: 85  ----LSWLEECESTDSKVDE 100


>gi|227877650|ref|ZP_03995697.1| DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256850746|ref|ZP_05556169.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|227862746|gb|EEJ70218.1| DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256712459|gb|EEU27457.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
          Length = 318

 Score = 45.2 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 23/93 (24%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----------N 693
           + ++NK +V +G +  +   +A + +  +G  V   +   T+ +I+GD           N
Sbjct: 230 NPVQNKNIVLSGNI-HMNEAEAGKMINNMGGQVDNSVLATTNYLIMGDQDFFRKDNQDLN 288

Query: 694 PGSKLEKAQQL-----GVKIMNEEQFLFLLQQY 721
                  A+ L      +K  +E  FL +L  +
Sbjct: 289 A------ARDLIKNGAKIKRFSETFFLSMLDDW 315


>gi|57241980|ref|ZP_00369920.1| competence protein ComEA [Campylobacter upsaliensis RM3195]
 gi|57017172|gb|EAL53953.1| competence protein ComEA [Campylobacter upsaliensis RM3195]
          Length = 79

 Score = 45.2 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           K +      A  +   +  N      L  +  +G+  A+AI+++ +  +N  ++E L K 
Sbjct: 3   KIFFLMFALASFLFAAVNLNTATLEELKSLKGIGETKAKAILDY-RKEQNFTSIEELKKV 61

Query: 632 VSPSIGRHEKNVSSEI 647
                   E+   S +
Sbjct: 62  KGIGDKTFEEIKDSIV 77


>gi|256844192|ref|ZP_05549679.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
 gi|256614097|gb|EEU19299.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
          Length = 318

 Score = 45.2 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 23/93 (24%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----------N 693
           + ++NK +V +G +  +   +A + +  +G  V   +   T+ +I+GD           N
Sbjct: 230 NPVQNKNIVLSGNI-HMNEAEAGKMINNMGGQVDNSVLATTNYLIMGDQDFFRKDNQDLN 288

Query: 694 PGSKLEKAQQL-----GVKIMNEEQFLFLLQQY 721
                  A+ L      +K  +E  FL +L  +
Sbjct: 289 A------ARDLIKNGAKIKRFSETFFLSMLDDW 315


>gi|295693537|ref|YP_003602147.1| DNA polymerase iii [Lactobacillus crispatus ST1]
 gi|295031643|emb|CBL51122.1| DNA polymerase III [Lactobacillus crispatus ST1]
          Length = 318

 Score = 45.2 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 23/93 (24%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----------N 693
           + ++NK +V +G +  +   +A + +  +G  V   +   T+ +I+GD           N
Sbjct: 230 NPVQNKNIVLSGNI-HMNEAEAGKMINNMGGQVDNSVLATTNYLIMGDQDFFRKDNQDLN 288

Query: 694 PGSKLEKAQQL-----GVKIMNEEQFLFLLQQY 721
                  A+ L      +K  +E  FL +L  +
Sbjct: 289 A------ARDLIKNGAKIKRFSETFFLSMLDDW 315


>gi|317152159|ref|YP_004120207.1| hypothetical protein Daes_0439 [Desulfovibrio aespoeensis Aspo-2]
 gi|316942410|gb|ADU61461.1| hypothetical protein Daes_0439 [Desulfovibrio aespoeensis Aspo-2]
          Length = 120

 Score = 45.2 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 9/69 (13%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQ----LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGV 706
           + FTG      R K +  + +     G +V + ++     +  G  PG +K+EKA+  GV
Sbjct: 48  ICFTG----FGRGKEKAMLQEIARMNGYIVRSDVTNGLTFLCCGPEPGPAKIEKAEFRGV 103

Query: 707 KIMNEEQFL 715
           ++++ E FL
Sbjct: 104 EMISLESFL 112


>gi|66800895|ref|XP_629373.1| hypothetical protein DDB_G0292820 [Dictyostelium discoideum AX4]
 gi|26189990|emb|CAD58666.1| (ADP-ribosyl)transferase [Dictyostelium discoideum]
 gi|60462759|gb|EAL60959.1| hypothetical protein DDB_G0292820 [Dictyostelium discoideum AX4]
          Length = 700

 Score = 45.2 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 13/102 (12%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII--VGD--NPGS 696
           K ++   +     F+GT   + + +  + V   GA  S   + K   ++  V D    G+
Sbjct: 28  KPLTEIFDGIVFCFSGTFS-VTQTELTKKVEGCGASTSKTCTAKVTHLVSTVDDFKKNGT 86

Query: 697 KLEKAQQLGVKIMNEEQFL-------FLLQQYNTTLRIHDDD 731
            + KA + G+ I+ E  F+         L++ + +L   +DD
Sbjct: 87  AVSKALKSGIPIVTE-GFITKSIEASKKLEEKDYSLSSSNDD 127


>gi|262047863|ref|ZP_06020812.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
 gi|312976690|ref|ZP_07788439.1| DNA polymerase III [Lactobacillus crispatus CTV-05]
 gi|260571856|gb|EEX28428.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
 gi|310896018|gb|EFQ45083.1| DNA polymerase III [Lactobacillus crispatus CTV-05]
          Length = 318

 Score = 44.8 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 23/93 (24%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----------N 693
           + ++NK +V +G +  +   +A + +  +G  V   +   T+ +I+GD           N
Sbjct: 230 NPVQNKNIVLSGNI-HMNEAEAGKMINNMGGQVDNSVLATTNYLIMGDQDFFRKDNQDLN 288

Query: 694 PGSKLEKAQQL-----GVKIMNEEQFLFLLQQY 721
                  A+ L      +K  +E  FL +L  +
Sbjct: 289 A------ARDLIKNGAKIKRFSETFFLSMLDDW 315


>gi|169841229|ref|ZP_02874342.1| hypothetical protein cdivTM_29018 [candidate division TM7
          single-cell isolate TM7a]
          Length = 32

 Score = 44.8 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 3/33 (9%)

Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
           P+L      + P  ++G ++     KV H   
Sbjct: 3  NPELITI---DSPTQRVGNKLLDGFQKVRHQRR 32


>gi|74197055|dbj|BAE35080.1| unnamed protein product [Mus musculus]
          Length = 1014

 Score = 44.8 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 634 PSIGRHEKNVSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           P+           + N K+  T G L +  + +A+  + +LG  ++   ++
Sbjct: 378 PTTVNSSAPADKPLSNMKI-LTLGKLSQ-NKDEAKAVIEKLGGKLTGSANK 426


>gi|296230268|ref|XP_002760624.1| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 1 [Callithrix
           jacchus]
          Length = 1013

 Score = 44.8 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 41/91 (45%), Gaps = 17/91 (18%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRKT 685
               +  +    + N K++   TL K+ R   + +  + +LG  ++         +S K 
Sbjct: 377 PAAVNSASAGKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTKK 433

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ ++  V++++E+ FL 
Sbjct: 434 EV----EKMNKKMEEVKEANVRVVSED-FLQ 459


>gi|281346595|gb|EFB22179.1| hypothetical protein PANDA_015010 [Ailuropoda melanoleuca]
          Length = 284

 Score = 44.8 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 19/260 (7%), Positives = 41/260 (15%), Gaps = 11/260 (4%)

Query: 229 PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM 288
                 +     +                +     +        R     H  +  Y   
Sbjct: 4   YIHTCVHTCIHAYTRACMHTCIHTYMCTYIHAYIHICVHACMHTRIHACIHAYIHAYTHT 63

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTR-LLDIDIQIG 347
            +             Y              A +  +M +       A     + + I   
Sbjct: 64  YTRIHACVQTCVH-TYMHAYTHTHIHTYMHAHTHTYMPTCIHTYIHAYMHAYIHVHIHTY 122

Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407
               +             A +   T                MR      V   +      
Sbjct: 123 THTCIHACVHTYTRTYICACMHTYT---------HACIHTCMRTYVHTCVYACIHTYIHA 173

Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
            +   +   +    H      +    C    +         T      H C      +  
Sbjct: 174 YIHTYMRTYMRTYMHTHTCMHTHVRTCAHTCAHTCMRTCIHTYMHTCIHACMHAYMHAYM 233

Query: 468 QLERLKHFVSRDAFNIEGLG 487
                 H  +    +     
Sbjct: 234 HAHTCMHTCAHTYTHTYICA 253



 Score = 42.9 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/281 (9%), Positives = 49/281 (17%), Gaps = 15/281 (5%)

Query: 211 KPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270
             +A  R      +     T I  Y++  VH    T        Y               
Sbjct: 12  CIHAYTRACMHTCIHTYMCTYIHAYIHICVHACMHTRIHACIHAYIHAYTHTYTRIHACV 71

Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330
                   H     +        T  Y                          +  +   
Sbjct: 72  QTCVHTYMHAYTHTHIHTYMHAHTHTYM---PTCIHTYIHAYMHAYIHVHIHTYTHTCIH 128

Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE------DYIKGLDA 384
           A     TR          T           V+       +  +H         Y++    
Sbjct: 129 ACVHTYTRTYICACMHTYTHACIHTCMRTYVHTCVYACIHTYIHAYIHTYMRTYMRTYMH 188

Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444
           +   M                   +   +   I    H     +     C    +     
Sbjct: 189 THTCMHTHVRTCAHTCAHTCMRTCIHTYMHTCIHACMHAYMHAYMHAHTCMHTCAHTY-- 246

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485
               T   + A  C     C+        H  +    +   
Sbjct: 247 ----THTYICACMCACIHTCAHTYTHAYMHAYTHTYTHTYM 283


>gi|296230270|ref|XP_002760625.1| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 2 [Callithrix
           jacchus]
          Length = 992

 Score = 44.8 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 41/91 (45%), Gaps = 17/91 (18%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRKT 685
               +  +    + N K++   TL K+ R   + +  + +LG  ++         +S K 
Sbjct: 356 PAAVNSASAGKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTKK 412

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           ++    +    K+E+ ++  V++++E+ FL 
Sbjct: 413 EV----EKMNKKMEEVKEANVRVVSED-FLQ 438


>gi|319761963|ref|YP_004125900.1| hypothetical protein Alide_1251 [Alicycliphilus denitrificans BC]
 gi|317116524|gb|ADU99012.1| hypothetical protein Alide_1251 [Alicycliphilus denitrificans BC]
          Length = 236

 Score = 44.8 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK-LEKAQQLGVKIMNEEQF 714
           G L      + +      G  +   +S   D ++   + G K L +A  LG+ +++E+ F
Sbjct: 178 GKL-----DELEGLAAAAGWQIRWTISPTVDYVVRNGSAGKKQLAEADNLGIDVIDEDTF 232

Query: 715 LFLL 718
             LL
Sbjct: 233 RALL 236


>gi|304373271|ref|YP_003856480.1| DNA polymerase I [Mycoplasma hyorhinis HUB-1]
 gi|304309462|gb|ADM21942.1| DNA polymerase I [Mycoplasma hyorhinis HUB-1]
 gi|330723856|gb|AEC46226.1| 5'-3' exonuclease [Mycoplasma hyorhinis MCLD]
          Length = 296

 Score = 44.8 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 571 AKYYLSYQNFA-QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-CAVEAL 628
           A  +    N   ++I +  A + D   ++  VP +G   A++++  + N  NI   ++ L
Sbjct: 168 ADNFFELHNLLPKQIPDFKALSGDSSDNIKGVPGIGPKTAKSLISQFDNIENILANLDQL 227

Query: 629 LKEVSPSIGRHEKNV 643
             ++   +  +++N+
Sbjct: 228 PSKMKQKLIENKENI 242


>gi|302675044|ref|XP_003027206.1| hypothetical protein SCHCODRAFT_113840 [Schizophyllum commune H4-8]
 gi|300100892|gb|EFI92303.1| hypothetical protein SCHCODRAFT_113840 [Schizophyllum commune H4-8]
          Length = 1033

 Score = 44.8 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
                    TGTL K+      +  T+LGA  +   + K   +I   + G+K   A +  
Sbjct: 8   PFAGMVFCATGTLDKMS---LFKKATELGAKSTHAFTDKVTHLIASGHGGAKYNCALERR 64

Query: 706 VKIM 709
           + I+
Sbjct: 65  IPIL 68


>gi|227889381|ref|ZP_04007186.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus johnsonii
           ATCC 33200]
 gi|227850183|gb|EEJ60269.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus johnsonii
           ATCC 33200]
          Length = 320

 Score = 44.8 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 27/124 (21%)

Query: 616 YQNPRN---ICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTL--QKIQRHKAQEY 669
           ++          V+ L L    P I +  +   S   +K +V  G L        +    
Sbjct: 199 FRQEHMLRAQEMVKTLDLTSEWPEIVKQSQAFRSPFAHKNVVIAGDLDVDDY---ELANA 255

Query: 670 VTQLGAVVSAILSRKTDIIIVGD---------NPGSKLEKAQQL-----GVKIMNEEQFL 715
           V  LG  +   + + TD ++VGD              L KA+ L      ++I +E+ FL
Sbjct: 256 VKNLGGFIRDEVGQDTDYLLVGDHDFFRTDIVE----LNKARALKKQGQNIRIWSEQFFL 311

Query: 716 FLLQ 719
            +L 
Sbjct: 312 NVLD 315


>gi|126179364|ref|YP_001047329.1| Hef nuclease [Methanoculleus marisnigri JR1]
 gi|125862158|gb|ABN57347.1| helicase domain protein [Methanoculleus marisnigri JR1]
          Length = 751

 Score = 44.4 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 10/56 (17%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
             +VG + AR L +++ S +               +   L  V  +G+  A+AI +
Sbjct: 699 FPNVGLKSARLLLEHFGSLKAIVDA----------EPEELAAVHGIGEKTARAIWD 744


>gi|170031028|ref|XP_001843389.1| draper [Culex quinquefasciatus]
 gi|167868869|gb|EDS32252.1| draper [Culex quinquefasciatus]
          Length = 1091

 Score = 44.4 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 34/340 (10%), Positives = 67/340 (19%), Gaps = 26/340 (7%)

Query: 157 GHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANP 216
           G +G D    I                  +   +V  +K         +   G    A  
Sbjct: 346 GWTGADCGMRICPDDRYGDGC------TKKCECDVGNTKMCHPWTGKCLCEPGWSSAACD 399

Query: 217 RNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQAN 276
           R     +    + +      N         +     G    + + +C          +  
Sbjct: 400 RP-CPFLKYGQDCSIHCNCKNNSPCNHINGTCNCIAGFKGEICEEQCDNGTYGQNCSERC 458

Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336
                 +   E         +         D     K   +        + +    +   
Sbjct: 459 ECQNGATCAPETGQCFCAPGWQGIRCDRPCDTHRYGKDCAQSCNCTNGGVCNPVNGQCTC 518

Query: 337 --TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRD 394
                 +   Q   +G                 + N    N    K +  +         
Sbjct: 519 PAGWSGEKCEQKCESGRFGQNCS----QSCDCHLENTLACNATTGKCICKADWG-----G 569

Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454
           +R   R  +   GE   +V     N       P +    C    +    D     G    
Sbjct: 570 VRCESRCQMGLYGESCSEVCACHNN---SSCDPITGECICSRGWTGANCDEPCPDGFFG- 625

Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAF---NIEGLGKQQL 491
            H C      +        H   + +     I    +   
Sbjct: 626 -HGCKERCPGTMHGNTTCNHITGKYSCRPGYIGTTCEHPC 664


>gi|296225177|ref|XP_002758379.1| PREDICTED: laminin subunit beta-2 [Callithrix jacchus]
          Length = 1798

 Score = 44.4 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 40/493 (8%), Positives = 75/493 (15%), Gaps = 66/493 (13%)

Query: 157  GHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN--------DEMIAV 208
            G  G     C                   E        K                +    
Sbjct: 807  GVVGRGCDVCAPGYYGFGPTGCQACQCSHEGALSSLCEKTSGQCPCRTGAFGLRCDRCQR 866

Query: 209  GRKPYANPRNAAS------------GILRRLNPTDITRYLNFF---------VHGLGKTS 247
            G+  + + R                  L   + T                   +G     
Sbjct: 867  GQWGFPSCRPCVCNGHADECDTHTGACLGCRDHTGGEHCERCIAGFHGDPRLPYGGQCRP 926

Query: 248  EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE----------MKSIRSTLPY 297
                +G                +     +   G      E           +        
Sbjct: 927  CPCPEGPGNQRHFATSCHRDEFSQQIVCHCRAGYTGLRCEACAPGHFGDPSRPGGQCQLC 986

Query: 298  DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
            +  G +  +D  +     G+  R                        Q            
Sbjct: 987  ECSGNIDPMDPDACDPHTGQCLRC-LHHTEGPQCAHCKPGFYGQAARQSCHR-------- 1037

Query: 358  LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRD---IRVGDRVLVKRAGEVIPKVV 414
                N+ G         ++ +          +   +     R         +G       
Sbjct: 1038 -CTCNLLGTNPQQCPSPDQCHCDPSSGQCPCLPNVQGPSCNRCAPNFWNLTSGHGCQPCA 1096

Query: 415  DIIVNERHPDAQPFSFPSFCPIC-----QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                  R P    F+    C         S          G    A  C      + Q  
Sbjct: 1097 CHPSRARGPTCNEFTGQCHCHAGFGGRTCSECQELHWGDPGLQCRACDCDSHGIDTPQCH 1156

Query: 470  ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
                H   R   +     +                             +           
Sbjct: 1157 RSTGHCSCRPGVSGVRCDQ------CARGFSGIFPACYPCHACFGDWDRVVQDLAARTRR 1210

Query: 530  FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
                +       +      S       LGI         + A    S     +    +  
Sbjct: 1211 LEQRAQELQQTGVLGAFESSFWHMQEKLGIVQGIVGARNTSAA---STAQLVEATEELRR 1267

Query: 590  HNNDDWLSLIRVP 602
               +    L ++ 
Sbjct: 1268 EIGEATEHLTQLE 1280


>gi|58337906|ref|YP_194491.1| DNA polymerase III [Lactobacillus acidophilus NCFM]
 gi|227902927|ref|ZP_04020732.1| DNA polymerase III [Lactobacillus acidophilus ATCC 4796]
 gi|58255223|gb|AAV43460.1| DNA polymerase III [Lactobacillus acidophilus NCFM]
 gi|227869343|gb|EEJ76764.1| DNA polymerase III [Lactobacillus acidophilus ATCC 4796]
          Length = 318

 Score = 44.4 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 45/124 (36%), Gaps = 37/124 (29%)

Query: 626 EALLKEVSPSIGRHEKNVS----------SEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           + LL+     I   +              + ++NKK+V +G +  +    A + +  +G 
Sbjct: 201 DELLENARNKIKNVDLTGDEVDYYQLGYRNPVQNKKIVLSGHI-HMDNEDAGKMIENMGG 259

Query: 676 VVSAILSRKTDIIIVGD------------------NPGSKLEKAQQLGVKIMNEEQFLFL 717
                +   T+ +I+GD                    GSK+++        ++E  FL +
Sbjct: 260 KNVDKVDPMTNYLIMGDHDFFRKDNEDLNTARDFIKNGSKIKR--------LSESFFLGM 311

Query: 718 LQQY 721
           L  +
Sbjct: 312 LDDW 315


>gi|291569735|dbj|BAI92007.1| excinuclease ABC subunit C [Arthrospira platensis NIES-39]
          Length = 624

 Score = 44.4 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 33/116 (28%), Gaps = 17/116 (14%)

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF--IFSLGIRH 561
           I +P +   L    +    ++   L          +    + + +       I  LG   
Sbjct: 521 IFVPGESQPLTTNPEQPGVELLRRLRDEAHRFAVSFHRNQRSKRMKRSHLDDIPGLGHHR 580

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                 + L  ++ S                     L  V  +G+ +AQ I +++ 
Sbjct: 581 Q-----KLLLGHFRSIDYIRIATPT----------QLAEVNGIGEKLAQQIYDYFH 621


>gi|284053794|ref|ZP_06384004.1| excinuclease ABC subunit C [Arthrospira platensis str. Paraca]
          Length = 624

 Score = 44.4 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 33/116 (28%), Gaps = 17/116 (14%)

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF--IFSLGIRH 561
           I +P +   L    +    ++   L          +    + + +       I  LG   
Sbjct: 521 IFVPGESQPLTTNPEQPGVELLRRLRDEAHRFAVSFHRNQRSKRMKRSHLDDIPGLGHHR 580

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                 + L  ++ S                     L  V  +G+ +AQ I +++ 
Sbjct: 581 Q-----KLLLGHFRSIDYIRIATPT----------QLAEVNGIGEKLAQQIYDYFH 621


>gi|329667930|gb|AEB93878.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii DPC
           6026]
          Length = 320

 Score = 44.4 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 27/124 (21%)

Query: 616 YQNPRN---ICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTL--QKIQRHKAQEY 669
           ++          V+ L L    P I +  +   S   +K +V  G L   +    +    
Sbjct: 199 FRQEHMLRAQEMVKTLDLTSEWPEIVKQSQAFRSPFAHKNVVIAGDLDVDEY---ELANA 255

Query: 670 VTQLGAVVSAILSRKTDIIIVGD---------NPGSKLEKAQQL-----GVKIMNEEQFL 715
           V  LG  +   + + TD ++VGD              L KA+ L      ++I +E+ FL
Sbjct: 256 VKNLGGFIRDEVGQDTDYLLVGDHDFFRTDIVE----LNKARALKKQGQNIRIWSEQFFL 311

Query: 716 FLLQ 719
            +L 
Sbjct: 312 NVLD 315


>gi|145225728|ref|YP_001136406.1| AAA ATPase [Mycobacterium gilvum PYR-GCK]
 gi|145218214|gb|ABP47618.1| AAA ATPase [Mycobacterium gilvum PYR-GCK]
          Length = 779

 Score = 44.4 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 50/139 (35%), Gaps = 30/139 (21%)

Query: 610 QAIVEFYQNPRNI-----CAVEAL---LKEVSPSIGRHEK-----NVSSEIE-NKKLVFT 655
           Q++ +  +   N        +  L    + +   I    +     +V   +    ++ FT
Sbjct: 644 QSVADQLRVAANRVQLTDEVLSRLHAAEELLGVEILSGTELLDRPDVDGILAPGARICFT 703

Query: 656 GT--------LQKIQRHKAQEYVTQLGAVVSAILSR-KTDIII---VGDNPGSKLEKAQQ 703
           GT        ++   R + +   T  G V    +++ + D+++    G   G K  KA +
Sbjct: 704 GTAQDPDGRVVE---RDEMERLATAAGLVPVKSVTKTRCDVLVTAEAGTQSG-KARKALE 759

Query: 704 LGVKIMNEEQFLFLLQQYN 722
            G  ++  + F   L  + 
Sbjct: 760 YGKPVLCADDFFAWLAAHG 778


>gi|296809265|ref|XP_002844971.1| WGR domain containing protein [Arthroderma otae CBS 113480]
 gi|238844454|gb|EEQ34116.1| WGR domain containing protein [Arthroderma otae CBS 113480]
          Length = 724

 Score = 44.4 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---PGSKLEKAQ 702
            + ++ +V +G+ +       +  V  LG   SA ++     +I        G+K ++A 
Sbjct: 4   PLVDQVVVVSGSFRDYNHDTIKYIVESLGGSFSAKVNDDCTHLITTKAAHPAGTKNKQAI 63

Query: 703 QLG--VKIMNEEQFLFLLQQYNTTLRIHDD 730
            LG  +KI++    L  L       ++ DD
Sbjct: 64  ALGNDIKIVS----LEWLTDSRDKGQLMDD 89


>gi|315638295|ref|ZP_07893476.1| competence protein ComEA [Campylobacter upsaliensis JV21]
 gi|315481642|gb|EFU72265.1| competence protein ComEA [Campylobacter upsaliensis JV21]
          Length = 79

 Score = 44.4 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631
           K +      A  +   +  N      L  +  +G+  A+AI+++ +  +N  ++E L K 
Sbjct: 3   KIFFLMFALASFLFAAVNLNTATLEELKSLKGIGETKARAILDY-RKEQNFTSIEELKKV 61

Query: 632 VSPSIGRHEKNVSSEI 647
                   E+   S +
Sbjct: 62  KGIGEKTFEELKDSIV 77


>gi|298675948|ref|YP_003727698.1| excinuclease ABC subunit C [Methanohalobium evestigatum Z-7303]
 gi|298288936|gb|ADI74902.1| excinuclease ABC, C subunit [Methanohalobium evestigatum Z-7303]
          Length = 603

 Score = 44.4 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           GI  +G    R+L +++ +  N                  L +V  + + +AQ IV++++
Sbjct: 548 GIPGIGESKKRALLEHFGTVDNIINA----------SIKDLKQVEGISNNLAQKIVDYFE 597

Query: 618 NPRNIC 623
           N  N  
Sbjct: 598 NDDNKK 603


>gi|297808239|ref|XP_002872003.1| poly polymerase 3 (PARP-3) ADP-ribosyltransferase 3 [Arabidopsis
           lyrata subsp. lyrata]
 gi|297317840|gb|EFH48262.1| poly polymerase 3 (PARP-3) ADP-ribosyltransferase 3 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 815

 Score = 44.4 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 44/110 (40%), Gaps = 14/110 (12%)

Query: 624 AVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVS 678
           A+  L+K+      R ++ + S         +   G   ++ R     ++ + + G  VS
Sbjct: 162 AISDLIKKHQDPKSRPKRELGSADKPFAGMMISLMG---RLTRTHQYWKKKIERNGGKVS 218

Query: 679 AILSRKTDIIIVGD-----NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
             +      ++V          SK+ +A + G+ +++E   +  ++++  
Sbjct: 219 NTVQG-VTCLVVSPAERERGGTSKMVEAMEQGLPVVSEAWLIDSVEKHEA 267


>gi|293380779|ref|ZP_06626825.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Lactobacillus crispatus 214-1]
 gi|290922665|gb|EFD99621.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Lactobacillus crispatus 214-1]
          Length = 318

 Score = 44.0 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 23/93 (24%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----------N 693
           + ++NK +V +G +  +   +A + +  +G  V   +   T+ +I+GD           N
Sbjct: 230 NPVQNKNIVLSGNI-HMNEAEAGKMINNMGGQVDDSVLATTNYLIMGDHDFFRKDNQDLN 288

Query: 694 PGSKLEKAQQL-----GVKIMNEEQFLFLLQQY 721
                  A+ L      +K  +E  FL +L  +
Sbjct: 289 A------ARDLIKNGAKIKRFSETFFLSMLDDW 315


>gi|218672221|ref|ZP_03521890.1| hypothetical protein RetlG_11537 [Rhizobium etli GR56]
          Length = 96

 Score = 44.0 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 15/84 (17%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSK 697
            E +   FTGT    QR   +  VT+ GA  +  L+++T+++++G          + G+K
Sbjct: 12  FEGRTYCFTGTFNYGQRKHCEAAVTERGAS-AGSLTQRTNVLVIGMYATDSWKHSSFGNK 70

Query: 698 LEKAQQ--LG---VKIMNEEQFLF 716
           +  A +  L    + I++EE ++ 
Sbjct: 71  IMNAVEYRLKGFPISIVSEEHWVR 94


>gi|229470526|sp|B4RTT9|RUVA_ALTMD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 206

 Score = 44.0 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 14/97 (14%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
                 + +  N+D  +L  +P +G   A+ +V        +   + L K          
Sbjct: 93  MSAGQFLASVQNEDVSALASLPGIGKKTAERLV--------VELKDRLAKFGKAQSIAVP 144

Query: 641 KNVSSEIENKKLVFTGTLQ-KIQRHKAQEYVTQLGAV 676
                 +    +V     +    R +AQ  +  LG  
Sbjct: 145 PPSGDLLSPNTIV-----EVNDAREEAQSALIALGYK 176


>gi|297627178|ref|YP_003688941.1| ATPase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922943|emb|CBL57525.1| ATPase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 814

 Score = 44.0 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 14/109 (12%)

Query: 622 ICAVEALLKEVSPSIG-----RHEKNVSSEIE-NKKLVFTGTL-----QKIQRHKAQEYV 670
           +  +E L ++   +I      R   +         ++ FTG++       I R   ++  
Sbjct: 697 LAELEQLERQWGVTIITDAMRRPADSAEQVFVPGARVCFTGSVIDARGTTISRSDMEQLA 756

Query: 671 TQLGAVVSAILSR-KTDIIIVGDNPG--SKLEKAQQLGVKIMNEEQFLF 716
            +   V    ++R + D+++  D      K  KA  LG  +++  +FL 
Sbjct: 757 AEHELVAVPSVTRTRCDVLVAADTASRSGKARKALDLGKPVISAAEFLA 805


>gi|323358024|ref|YP_004224420.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
 gi|323274395|dbj|BAJ74540.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
          Length = 405

 Score = 44.0 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 649 NKKLVFTGTLQKIQRHKAQ--EYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQL 704
              +V TG     +R +A     +T+ G +    + +K  +++  D  +   K  +A+  
Sbjct: 329 GDTVVITG---DTRRDRAAWFAILTERGLIPKDSMVKKAKVLVAADPDSMSGKARQARAW 385

Query: 705 GVKIMNEEQFLFLL 718
           G+ I+ EE    LL
Sbjct: 386 GIPIVTEEGLERLL 399


>gi|294670237|ref|ZP_06735130.1| DNA topoisomerase [Neisseria elongata subsp. glycolytica ATCC
           29315]
 gi|291307974|gb|EFE49217.1| DNA topoisomerase [Neisseria elongata subsp. glycolytica ATCC
           29315]
          Length = 150

 Score = 44.0 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
             N      L  +P +G   AQAIV++ +   N  +VE L K
Sbjct: 63  NINTATVEELKALPGIGPAKAQAIVDYRKENGNFKSVEDLKK 104


>gi|115531716|ref|YP_784242.1| NAD+-dependent DNA ligase [Crocodilepox virus]
 gi|115521069|gb|ABJ08943.1| NAD+-dependent DNA ligase [Crocodilepox virus]
          Length = 360

 Score = 44.0 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 103 NIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGED 162
           N +++  ++                F +  K+DG  + +    G       RG    G+D
Sbjct: 172 NEQEVEDWL----------SGTDCDFIVTHKLDGVSVVLVVGTGGQRRLYARGTVSHGQD 221

Query: 163 VSACIRAIPTIPRV 176
           ++  + ++  +PR 
Sbjct: 222 ITHLLPSVTNLPRF 235


>gi|327439585|dbj|BAK15950.1| DNA uptake protein [Solibacillus silvestris StLB046]
          Length = 215

 Score = 44.0 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 35/103 (33%)

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
           IN  + +  E  I+   I     E+   + +   +  + +   N  I  N      L ++
Sbjct: 108 INHAQKLHDEMVIYIPKIGEEPEEVMEQIIQASPATGSGSGSSNGKININKASEGELTQL 167

Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
           P +G   A AI++      N   +E L           E+   
Sbjct: 168 PGIGPAKAAAIIQHRSEQGNFQIIEDLKNVTGIGDKTFEQLKD 210


>gi|294671442|ref|ZP_06736289.1| hypothetical protein NEIELOOT_03152 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306861|gb|EFE48104.1| hypothetical protein NEIELOOT_03152 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 109

 Score = 44.0 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
             N      L  +P +G   AQAIV++ +   N  +VE L K
Sbjct: 22  NINTATVEELKALPGIGPAKAQAIVDYRKENGNFKSVEDLKK 63


>gi|281205805|gb|EFA79994.1| hypothetical protein PPL_06815 [Polysphondylium pallidum PN500]
          Length = 360

 Score = 44.0 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 30/44 (68%), Gaps = 2/44 (4%)

Query: 673 LGAVVSAILSRKTDIIIVGDNP-GSKLEKAQQLGVKIMNEEQFL 715
           LG  V+  +++KT I I  DN   S++EKA++L + ++ +++F+
Sbjct: 33  LGGTVARSINKKTTIAICNDNSLTSEIEKAEKLDIPVV-KKEFI 75


>gi|159163816|pdb|2COK|A Chain A, Solution Structure Of Brct Domain Of Poly(Adp-Ribose)
           Polymerase-1
          Length = 113

 Score = 44.0 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 40/84 (47%), Gaps = 17/84 (20%)

Query: 642 NVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRKTDIIIVGD 692
           +    + N K++   TL K+ R   + +  + +LG  ++         +S K ++    +
Sbjct: 6   SGDKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTKKEV----E 58

Query: 693 NPGSKLEKAQQLGVKIMNEEQFLF 716
               K+E+ ++  +++++E+ FL 
Sbjct: 59  KMNKKMEEVKEANIRVVSED-FLQ 81


>gi|296119759|ref|ZP_06838313.1| hypothetical protein HMPREF0281_02275 [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295966913|gb|EFG80184.1| hypothetical protein HMPREF0281_02275 [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 467

 Score = 44.0 bits (102), Expect = 0.096,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 16/118 (13%)

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
           + +A  +            ++ L+K                     + F+GTL+ I R +
Sbjct: 167 EKVAAQL----NVDE--QVIDKLVKPGYAHHTLELNPGDR------VAFSGTLE-IPREE 213

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
                T    +V   +S KT +++    D+  +K + A++L + ++ E +F  +L  +
Sbjct: 214 WVHRATSAS-LVVEQVSDKTKVLVASNLDSDSAKAQTARRLNIPMVTESKFAKILGTH 270


>gi|168185645|ref|ZP_02620280.1| excinuclease ABC, C subunit [Clostridium botulinum C str. Eklund]
 gi|169296408|gb|EDS78541.1| excinuclease ABC, C subunit [Clostridium botulinum C str. Eklund]
          Length = 621

 Score = 44.0 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 28/63 (44%), Gaps = 10/63 (15%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I +VG +  + L + + S +N  +            +  L+    + +  A++I++++ 
Sbjct: 569 DIPNVGQKRRKELLQKFGSIENIKKA----------SYEELLDTDSINEKAAKSIIDYFN 618

Query: 618 NPR 620
           N +
Sbjct: 619 NDK 621


>gi|290989157|ref|XP_002677209.1| hypothetical protein NAEGRDRAFT_79764 [Naegleria gruberi]
 gi|284090815|gb|EFC44465.1| hypothetical protein NAEGRDRAFT_79764 [Naegleria gruberi]
          Length = 621

 Score = 44.0 bits (102), Expect = 0.100,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
             +     +GTL K  R + +  + + G   +A +++    +I
Sbjct: 7   FNSLVFCISGTLSK-GRKEVENEIKKYGGKTAASITKAVTHLI 48


>gi|194227290|ref|XP_001491507.2| PREDICTED: similar to Poly [ADP-ribose] polymerase 1 (PARP-1)
           (ADPRT) (NAD(+) ADP-ribosyltransferase 1)
           (Poly[ADP-ribose] synthetase 1) [Equus caballus]
          Length = 999

 Score = 44.0 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 5/42 (11%)

Query: 644 SSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAILSR 683
              + N K++   TL K+ R   + +  + +LG  ++   S+
Sbjct: 372 DKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTTSK 410


>gi|11499994|ref|NP_071240.1| DNA repair protein, putative [Archaeoglobus fulgidus DSM 4304]
 gi|2650671|gb|AAB91244.1| DNA repair protein, putative [Archaeoglobus fulgidus DSM 4304]
          Length = 208

 Score = 44.0 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 10/72 (13%)

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           ++    +      I  +G + A  L  Y+ S Q  A                L RV  +G
Sbjct: 147 KSHENPKIAMLTAIPGIGEKKAEKLLDYFGSIQRIANA----------SIAELKRVDGIG 196

Query: 606 DIIAQAIVEFYQ 617
           +  A+ I  F++
Sbjct: 197 EKKAREIYRFFR 208


>gi|295425759|ref|ZP_06818444.1| DNA polymerase III [Lactobacillus amylolyticus DSM 11664]
 gi|295064567|gb|EFG55490.1| DNA polymerase III [Lactobacillus amylolyticus DSM 11664]
          Length = 318

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 19/89 (21%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---------NPG 695
           + + NKK+V T  L K+    A + +  LG      L+ +T+ +I+GD         +  
Sbjct: 230 NPVNNKKIVLTDHL-KMNLEDANKMIDNLGGQAQGRLAMETNYLILGDHDFFSRDNND-- 286

Query: 696 SKLEKAQQLG-----VKIMNEEQFLFLLQ 719
             L KAQ+L      +K ++E  FL +L 
Sbjct: 287 --LNKAQELNHEGADIKHLSESFFLNMLD 313


>gi|254166800|ref|ZP_04873654.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
 gi|289596077|ref|YP_003482773.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
 gi|197624410|gb|EDY36971.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
 gi|289533864|gb|ADD08211.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
          Length = 221

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 48/155 (30%), Gaps = 16/155 (10%)

Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA----DIFTLQRRQQTSTT 522
           ++   L H    D  ++   G   +   +      + I I      D      R      
Sbjct: 79  RRRALLIHGYMGDEISLSSFGWNHIMGAYMEIQYRYDIPIFHAEDDDALAEFFRILIKRE 138

Query: 523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582
                 G  +     +             +      + ++G +IA++L +++ S +  A+
Sbjct: 139 TEGKNEGEFERKWMRIPPKRVMSDEE--WKIYALSSLPYIGEKIAKALLEHFGSIEKIAR 196

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                      + + L +V  +GD  A+ I   + 
Sbjct: 197 A----------NIVELKKVEGIGDKKARQIYRIFH 221


>gi|302381054|ref|ZP_07269514.1| excinuclease ABC, C subunit [Finegoldia magna ACS-171-V-Col3]
 gi|302311101|gb|EFK93122.1| excinuclease ABC, C subunit [Finegoldia magna ACS-171-V-Col3]
          Length = 608

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 10/61 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +G +  ++L K++ +     +               L  V  + +  A+ IV++++
Sbjct: 558 NIALIGEKRKKALMKHFKTLDRIKKA----------SVEELCEVDGMNEKAAENIVDYFK 607

Query: 618 N 618
            
Sbjct: 608 Q 608


>gi|255536695|ref|YP_003097066.1| UDP-N-acetylmuramate--alanine ligase [Flavobacteriaceae bacterium
           3519-10]
 gi|255342891|gb|ACU09004.1| UDP-N-acetylmuramate--alanine ligase [Flavobacteriaceae bacterium
           3519-10]
          Length = 458

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 7/68 (10%)

Query: 667 QEYVTQLGAVV----SAILSRKTDIIIVG---DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           ++ +   G        + +S KTD+I+V    ++   +++KA++LG+ I+   + L  + 
Sbjct: 51  KDQLEAEGIKCHLQDGSGISEKTDLIVVSTAIEDTVFEVQKARELGIPIVKRSELLAAIA 110

Query: 720 QYNTTLRI 727
           +   T+ +
Sbjct: 111 KSKKTIAV 118


>gi|302565330|ref|NP_001181397.1| laminin subunit gamma-1 [Macaca mulatta]
          Length = 1798

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 39/493 (7%), Positives = 76/493 (15%), Gaps = 66/493 (13%)

Query: 157  GHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN--------DEMIAV 208
            G  G     C                   E        K                +    
Sbjct: 807  GVVGRRCDLCAPGYYGFGPTGCQACQCSPEGALSSLCEKTSGQCPCRTGTFGLHCDRCQR 866

Query: 209  GRKPYANPRNAAS------------GILRRLNPTDITRYLNFF---------VHGLGKTS 247
            G+  + + R                  L   + T                   +G     
Sbjct: 867  GQWGFPSCRPCVCNGHADECDTHTGACLGCRDHTGGEHCERCIAGFHGDPQLPYGGQCRP 926

Query: 248  EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE----------MKSIRSTLPY 297
                +G                +     +   G      E           +        
Sbjct: 927  CPCPEGPGSQRHFATSCHRDEYSQKIVCHCRAGYTGLRCEACAPGHFGDPSRPGGRCQLC 986

Query: 298  DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
            +  G +  +D  +     G+  R                        Q            
Sbjct: 987  ECSGNIDLMDPDACDPHTGQCLRC-LHHTEGPHCAHCKPGFHGQAARQSCHR-------- 1037

Query: 358  LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI---RVGDRVLVKRAGEVIPKVV 414
                N+ G         ++ +          +   +               +G       
Sbjct: 1038 -CTCNLLGTNPQQCPSPDQCHCDRSSGQCPCLPNVQGPSCDHCAPNFWNFTSGHGCHPCA 1096

Query: 415  DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA-----AHRCTGGLACSAQQL 469
                  R P    F+   +C             +     A     A  C      + Q  
Sbjct: 1097 CHPRQARGPTCNEFTGQCYCRAGFGGRTCSECQELHWGDAGLQCRACDCDPRGTDTPQCH 1156

Query: 470  ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
                H   R   +     +             F               +           
Sbjct: 1157 RSTGHCSCRPGVSGVRCDQ------CARGFSGFFPACHPCHACFGDWDRVVQDLAARTRR 1210

Query: 530  FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
                +       +      S       LGI         + A    S     +    +  
Sbjct: 1211 LEQRAQELQQTGVLGAFESSFWHMQEKLGIVQGIVGARNTSAA---STAQLVEATEELRR 1267

Query: 590  HNNDDWLSLIRVP 602
               +    L ++ 
Sbjct: 1268 EIGEATEHLTQLE 1280


>gi|254292978|ref|YP_003059001.1| hypothetical protein Hbal_0602 [Hirschia baltica ATCC 49814]
 gi|254041509|gb|ACT58304.1| hypothetical protein Hbal_0602 [Hirschia baltica ATCC 49814]
          Length = 129

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 665 KAQEYV--TQ--LGAVVSAILSRKTDIIIVGD-NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
           + +E +      LG +V   L++K D ++ G   P SK+  A++ GV+I+ E +F     
Sbjct: 62  ELKEKLGDEAFALGFLVDNGLTKKLDFMVCGPTAPASKIRAAEKFGVEILMEFEFKEF-- 119

Query: 720 QYNTTLRIHD 729
           Q    L I +
Sbjct: 120 QETGELPIRE 129


>gi|222641663|gb|EEE69795.1| hypothetical protein OsJ_29518 [Oryza sativa Japonica Group]
          Length = 558

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
                   +  TG L K  R + +E   ++G   S  L  K   ++V
Sbjct: 51  DGPFAGLVICVTG-LSKEARTQVKEATERMGGEYSGSLHPKCTHLVV 96


>gi|218202217|gb|EEC84644.1| hypothetical protein OsI_31525 [Oryza sativa Indica Group]
          Length = 558

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
                   +  TG L K  R + +E   ++G   S  L  K   ++V
Sbjct: 51  DGPFAGLVICVTG-LSKEARTQVKEATERMGGEYSGSLHPKCTHLVV 96


>gi|222480951|ref|YP_002567188.1| ERCC4 domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222453853|gb|ACM58118.1| ERCC4 domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 836

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 10/57 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            I  +G   AR+L +++ + +                   L+ V  VG + A+ I E
Sbjct: 783 SIADIGPVTARTLLEHFGTVEAVMTAPE----------DDLLEVDGVGPVTAERIRE 829


>gi|119590191|gb|EAW69785.1| poly (ADP-ribose) polymerase family, member 1, isoform CRA_b [Homo
           sapiens]
          Length = 1008

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 39/80 (48%), Gaps = 17/80 (21%)

Query: 646 EIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRKTDIIIVGDNPGS 696
            + N K++   TL K+ R   + +  + +LG  ++         +S K ++    +    
Sbjct: 387 PLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTKKEV----EKMNK 439

Query: 697 KLEKAQQLGVKIMNEEQFLF 716
           K+E+ ++  +++++E+ FL 
Sbjct: 440 KMEEVKEANIRVVSED-FLQ 458


>gi|332993889|gb|AEF03944.1| Holliday junction DNA helicase motor protein [Alteromonas sp. SN2]
          Length = 206

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 14/102 (13%)

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635
           +  +       + A  N D  +L+ +P +G   A+ +V        +   + L K     
Sbjct: 88  TILSGMSAGQFLSAVQNADVSALVSLPGIGKKTAERLV--------VELKDRLAKFGKVQ 139

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQ-KIQRHKAQEYVTQLGAV 676
                      +    LV     +    R  AQ  +  LG  
Sbjct: 140 SIAIPPPSGDLLNTNTLV-----EVNDTREDAQSALVALGYK 176


>gi|126306928|ref|XP_001368346.1| PREDICTED: similar to poly(ADP-ribose) synthetase [Monodelphis
           domestica]
          Length = 1011

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 44/102 (43%), Gaps = 17/102 (16%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAI-------LSRK 684
           P            + N K++   TL K+ R   + +  + +LG  ++         +S K
Sbjct: 375 PPTVNSSAQPDKPLSNMKIL---TLGKLSRNKDEMKATIEELGGKLTGTANKASLCISTK 431

Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
            ++    +    K+E+ ++  V++++E+ FL  +     +L+
Sbjct: 432 KEV----EKMNKKMEEVKEANVRVVSED-FLKDISASGKSLQ 468


>gi|225464980|ref|XP_002274597.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296084929|emb|CBI28338.3| unnamed protein product [Vitis vinifera]
          Length = 828

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/109 (11%), Positives = 35/109 (32%), Gaps = 14/109 (12%)

Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ---KIQRHKAQEYVTQLGAVVSA 679
             ++   ++ +    R+            +  +G L       R      + + G   + 
Sbjct: 180 ELIKNHQEQGNF-PRRNLNPTGKPFTGMLICLSGRLSRTHHYWR----TKIEEHGGKDAN 234

Query: 680 ILSRKTDIIIVGD-----NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
            +   T  ++V          SK+ +A + G+ ++ E      +++   
Sbjct: 235 SVLGAT-CLVVSPAERERGGSSKVVEAMERGIPVVREAWLSDSIEKQEA 282


>gi|150021611|ref|YP_001306965.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Thermosipho melanesiensis BI429]
 gi|149794132|gb|ABR31580.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermosipho melanesiensis BI429]
          Length = 184

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 26/56 (46%)

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
            S +   +    II  N+  +  L+ +P +G   A++I+ + +      +++ LL 
Sbjct: 33  KSGEKTRKYAEQIIDINSATFEQLVSLPGIGPTKAKSIINYREKVGEFLSIDDLLN 88



 Score = 42.5 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
           I  NN     L+++P +G + AQ I+EF +   N+ + E LLK         EK
Sbjct: 124 ININNASVEELMKLPGIGKVKAQEIIEFRKKFGNVQSFEDLLKVKGIGKKTLEK 177


>gi|25010472|ref|NP_734867.1| hypothetical protein gbs0399 [Streptococcus agalactiae NEM316]
 gi|25010784|ref|NP_735179.1| hypothetical protein gbs0729 [Streptococcus agalactiae NEM316]
 gi|25011033|ref|NP_735428.1| hypothetical protein gbs0980 [Streptococcus agalactiae NEM316]
 gi|23094825|emb|CAD46043.1| Unknown [Streptococcus agalactiae NEM316]
 gi|23095138|emb|CAD46373.1| unknown [Streptococcus agalactiae NEM316]
 gi|23095433|emb|CAD46639.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 77

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 14/73 (19%)

Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQQL---G--V 706
           + R +   ++   GA+V   +S +T+I++ G         D    K E A      G  +
Sbjct: 1   MTRREVIVFLENQGAIVQGYVSSQTEILLAGHKQLDLFEPDKRSRKYEAALSRIATGQAI 60

Query: 707 KIMNEEQFLFLLQ 719
            I++EE F  L++
Sbjct: 61  TILSEEAFFNLVK 73


>gi|297587656|ref|ZP_06946300.1| excision endonuclease subunit UvrC [Finegoldia magna ATCC 53516]
 gi|297574345|gb|EFH93065.1| excision endonuclease subunit UvrC [Finegoldia magna ATCC 53516]
          Length = 608

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 42/139 (30%), Gaps = 15/139 (10%)

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTKIENILG--FGDVSVTNLYD 540
            + K+ LD F         ++         +    +        +    F     T+ + 
Sbjct: 480 NIAKEVLDEFNLDIPILGLVKDDKHRTRGIIYENDEIRLKVNTPLYRLLFAIQEETHRFA 539

Query: 541 SINKRRNISLERFIFSL-GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
               R+          L  I+ +G +  ++L K++ +     +               L 
Sbjct: 540 INYHRKLHEKNFKKSELDNIKLIGKKRKKALMKHFKTLDRIKKA----------SVEELC 589

Query: 600 RVPLVGDIIAQAIVEFYQN 618
            V  + +  A+ IV +++ 
Sbjct: 590 EVDGMNEKAAENIVNYFKQ 608


>gi|327262609|ref|XP_003216116.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 3 [Anolis
           carolinensis]
          Length = 1010

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           +P I          + + K++  G L K  + + +  + +LG  V+A ++R
Sbjct: 372 TPVIENSTTPADKPLNSMKILVLGKLSK-NKDEIKSAIEELGGKVTATVNR 421


>gi|302658328|ref|XP_003020869.1| poly(ADP)-ribose polymerase PARP, putative [Trichophyton verrucosum
           HKI 0517]
 gi|291184737|gb|EFE40251.1| poly(ADP)-ribose polymerase PARP, putative [Trichophyton verrucosum
           HKI 0517]
          Length = 752

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 12/78 (15%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE---- 699
           S  +  + +V +G+ +       +  V QLG   SA ++     ++      SK      
Sbjct: 2   SKPLAGQVVVVSGSFRAYNHETIKYIVEQLGGTFSATVTDACTHLV-----TSKAAHPAD 56

Query: 700 -KAQQLG--VKIMNEEQF 714
            +A  LG  +KI++ +  
Sbjct: 57  QQAIALGNDIKIVSLDWL 74


>gi|158316676|ref|YP_001509184.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec]
 gi|158112081|gb|ABW14278.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec]
          Length = 389

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 647 IENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG--SKLEKAQQ 703
           ++  ++ F+G       R +        G  V+  +SR+T +++  D  G   K+  A  
Sbjct: 289 VQGMRVAFSG--PTRTERGELVGRAVAAGLHVTETVSRRTSLLVTNDARGVTRKVRTAAL 346

Query: 704 LGVKIMNEEQFLFLLQ 719
           L   +  EE FL LL 
Sbjct: 347 LNTPVRGEEDFLELLA 362


>gi|42519676|ref|NP_965606.1| hypothetical protein LJ0649 [Lactobacillus johnsonii NCC 533]
 gi|41583965|gb|AAS09572.1| hypothetical protein LJ_0649 [Lactobacillus johnsonii NCC 533]
          Length = 320

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 27/124 (21%)

Query: 616 YQNPRN---ICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ--KIQRHKAQEY 669
           ++          V+ L L    P + +  +   S   +K +V  G L   +    +    
Sbjct: 199 FKQEHMLRAQEMVKTLDLTSEWPELVKQSQAFRSPFAHKNVVIAGDLDVDEY---ELANA 255

Query: 670 VTQLGAVVSAILSRKTDIIIVGD---------NPGSKLEKAQQL-----GVKIMNEEQFL 715
           V  LG  +   + + TD ++VGD              L KA+ L      ++I +E+ FL
Sbjct: 256 VKNLGGFIRDEVGQDTDYLLVGDHDFFRTDIVE----LNKARALKKQGQNIRIWSEQFFL 311

Query: 716 FLLQ 719
            +L 
Sbjct: 312 NVLD 315


>gi|327262607|ref|XP_003216115.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 2 [Anolis
           carolinensis]
          Length = 1009

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           +P I          + + K++  G L K  + + +  + +LG  V+A ++R
Sbjct: 371 TPVIENSTTPADKPLNSMKILVLGKLSK-NKDEIKSAIEELGGKVTATVNR 420


>gi|327262605|ref|XP_003216114.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 1 [Anolis
           carolinensis]
          Length = 1006

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           +P I          + + K++  G L K  + + +  + +LG  V+A ++R
Sbjct: 368 TPVIENSTTPADKPLNSMKILVLGKLSK-NKDEIKSAIEELGGKVTATVNR 417


>gi|241812099|ref|XP_002414597.1| laminin beta 1 chain, putative [Ixodes scapularis]
 gi|215508808|gb|EEC18262.1| laminin beta 1 chain, putative [Ixodes scapularis]
          Length = 2084

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/327 (11%), Positives = 66/327 (20%), Gaps = 18/327 (5%)

Query: 157  GHSGED---VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
            G  G        C                   + R   Y  + D      E         
Sbjct: 1220 GTYGFGPGGCRPCDCNGIGSLDNFCDAQTGQCKCRPNTYGRQCD------ECQPGYWNYP 1273

Query: 214  ANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
               R    G     + +      +      G   +    G Y   +    +         
Sbjct: 1274 NCQRCECHGHADTCD-SRTGHCSHCRDFTSGPHCDRCETGFYGDPRYGVDIPCRPCPCPG 1332

Query: 274  QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333
              ++     +  +      +   +   G V +  +       GE           + +  
Sbjct: 1333 TIDSGVNHATSCDLDPRTGNVACHCSPGYVGERCDRCANNYYGEPNAPGGECRRCECSGN 1392

Query: 334  QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT-LHNEDYIKGLDASGKVMRGG 392
               T       Q G     T V      N  G         H  D  +           G
Sbjct: 1393 TDDT-------QPGNCDSRTGVCLRCLYNTEGHHCERCKPGHYGDASRQQCLECVCNMLG 1445

Query: 393  RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
             D   G    V      +P V     +   P+    +    C  C        + K  + 
Sbjct: 1446 MDHTRGYCDAVTGQCPCLPNVEGRSCDRCAPNFWKIASGEGCEDCGCDPQGSYDLKCNEF 1505

Query: 453  VAAHRCTGGLACSAQQLERLKHFVSRD 479
                 C  G         +  H+ +  
Sbjct: 1506 DGQCPCKPGHGGRQCNQCQDLHWGNPR 1532


>gi|76800822|ref|YP_325830.1| Hef nuclease [Natronomonas pharaonis DSM 2160]
 gi|76556687|emb|CAI48259.1| probable nuclease domain protein/ probable ATP-dependent helicase
           [Natronomonas pharaonis DSM 2160]
          Length = 845

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 10/56 (17%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           +  VG   AR+L +++ S +               D  +L  V  VGD+ A+ I +
Sbjct: 790 VAEVGPVTARALLEHFGSVEAVMSA----------DEEALQAVDGVGDVTAERIRD 835


>gi|297538806|ref|YP_003674575.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Methylotenera sp. 301]
 gi|297258153|gb|ADI29998.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Methylotenera sp. 301]
          Length = 215

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 29/64 (45%)

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
            + +   ++++ +F+      +  N      L  +  +G + AQAI+++ +      +V+
Sbjct: 1   MKKILLAFVTFLSFSLSAMAGVNINTATQAELESLDGIGPVKAQAIIDYRKKNGGFKSVD 60

Query: 627 ALLK 630
            L K
Sbjct: 61  ELEK 64


>gi|331268387|ref|YP_004394879.1| hypothetical protein CbC4_0202 [Clostridium botulinum BKT015925]
 gi|329124937|gb|AEB74882.1| protein of unknown function DUF147 [Clostridium botulinum
           BKT015925]
          Length = 354

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 17/51 (33%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +N       +       +  L  V  +G+  A+AI    +  R    ++ 
Sbjct: 302 IENLVNNFKELKEVMEASYEELDNVEGIGEARAKAIKNGLRRLREQFMIDK 352


>gi|303235299|ref|ZP_07321917.1| excinuclease ABC, C subunit [Finegoldia magna BVS033A4]
 gi|302493613|gb|EFL53401.1| excinuclease ABC, C subunit [Finegoldia magna BVS033A4]
          Length = 608

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 10/61 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I+ +G +  ++L K++ +     +               L  V  + +  A+ IV +++
Sbjct: 558 NIKLIGEKRKKALMKHFKTLDRIKKA----------SVEELCEVDGMNEKAAENIVNYFK 607

Query: 618 N 618
            
Sbjct: 608 Q 608


>gi|253681837|ref|ZP_04862634.1| DNA integrity scanning protein DisA [Clostridium botulinum D str.
           1873]
 gi|253561549|gb|EES91001.1| DNA integrity scanning protein DisA [Clostridium botulinum D str.
           1873]
          Length = 354

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 17/51 (33%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +N       +       +  L  V  +G+  A+AI    +  R    ++ 
Sbjct: 302 IENLVNNFKELKEVMEASYEELDNVEGIGEARAKAIKNGLRRLREQFMIDK 352


>gi|290998587|ref|XP_002681862.1| topoisomerase II-binding protein 1 [Naegleria gruberi]
 gi|284095487|gb|EFC49118.1| topoisomerase II-binding protein 1 [Naegleria gruberi]
          Length = 628

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQL 704
            ENKK+  TG  +  +R      + Q GA+ +  L+++ D +IV   D    K+EKA+  
Sbjct: 311 FENKKISITG-FEGAERSDMIYLIKQTGAIYTGDLNKQNDFLIVKSFDLVSKKIEKAKTW 369

Query: 705 GVKIMNEE 712
            + I++ +
Sbjct: 370 ELTILSPD 377


>gi|169824072|ref|YP_001691683.1| excinuclease ABC subunit C [Finegoldia magna ATCC 29328]
 gi|229558030|sp|B0S0L4|UVRC_FINM2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|167830877|dbj|BAG07793.1| excinuclease ABC subunit C [Finegoldia magna ATCC 29328]
          Length = 608

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 10/61 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +G +  ++L K++ +     +               L  V  + +  A+ IV +++
Sbjct: 558 NIALIGEKRKKALMKHFKTLDRIKKA----------SVEELCEVDGMNEKAAENIVNYFK 607

Query: 618 N 618
            
Sbjct: 608 Q 608


>gi|323454653|gb|EGB10523.1| hypothetical protein AURANDRAFT_62499 [Aureococcus anophagefferens]
          Length = 1848

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 18/96 (18%)

Query: 609  AQAIVE----FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
            A+A+V     F          + + +       R  +   + +   K+ FTG  + I R+
Sbjct: 1123 AEAVVAGSGAFAHASAFRKLADEVWRHGG--GARSIEAAENCLAGHKVCFTGVFETIGRN 1180

Query: 665  ---------KAQEYVTQLGAVVSAILSRKTDIIIVG 691
                     +        G +    ++  T +++VG
Sbjct: 1181 RPDTQGHIRELTAR---FGGICRDGVTSSTTVLVVG 1213


>gi|86604931|ref|YP_473694.1| excinuclease ABC subunit C [Synechococcus sp. JA-3-3Ab]
 gi|119367850|sp|Q2JXP8|UVRC_SYNJA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|86553473|gb|ABC98431.1| excinuclease ABC, C subunit [Synechococcus sp. JA-3-3Ab]
          Length = 621

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 6/45 (13%), Positives = 15/45 (33%)

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
             +   ++          L +VP +G  +A+ I  ++        
Sbjct: 572 LMEAFRSLARIQVATEEQLAQVPGIGPKLARQIYRYFHPEAETEL 616


>gi|315230780|ref|YP_004071216.1| ATP-dependent RNA helicase [Thermococcus barophilus MP]
 gi|315183808|gb|ADT83993.1| ATP-dependent RNA helicase [Thermococcus barophilus MP]
          Length = 770

 Score = 42.9 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 10/56 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           G+ +V A +A+ L +++ S +       N           L+ V  +G+ IA+ I 
Sbjct: 714 GLPYVSATLAKRLLRHFGSVERVFTAKEN----------ELMEVEGIGEKIAREIR 759


>gi|288561345|ref|YP_003424831.1| Hef nuclease [Methanobrevibacter ruminantium M1]
 gi|288544055|gb|ADC47939.1| Hef nuclease [Methanobrevibacter ruminantium M1]
          Length = 842

 Score = 42.9 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 19/106 (17%)

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSL-GIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
                   ++     ++     E+ +F +  + ++G   A++L +++ S +   Q     
Sbjct: 747 REQQGEKKSIQIRTERKPQNLWEQQLFIIESLPNIGPVHAKNLLEHFGSVKAVLQA---- 802

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVE-------FYQNPR-NICAV 625
                 D   L  V  +G   A++I E       +++ P  N   +
Sbjct: 803 ------DEKQLQEVDGIGKKTAKSIKEVVDGKYLYFKKPEKNEKLI 842


>gi|79517236|ref|NP_197639.2| NAD+ ADP-ribosyltransferase [Arabidopsis thaliana]
 gi|332005648|gb|AED93031.1| NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferase
           [Arabidopsis thaliana]
          Length = 814

 Score = 42.9 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGD-----NPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           ++ + + G  VS  +      ++V          SK+ +A + G+ +++E   +  ++++
Sbjct: 206 KKKIERNGGKVSNTVQG-VTCLVVSPAERERGGTSKMVEAMEQGLPVVSEAWLIDSVEKH 264

Query: 722 NT 723
             
Sbjct: 265 EA 266


>gi|75171204|sp|Q9FK91|PARP3_ARATH RecName: Full=Poly [ADP-ribose] polymerase 3; Short=PARP-3;
           AltName: Full=NAD(+) ADP-ribosyltransferase 3;
           Short=ADPRT-3; AltName: Full=Poly[ADP-ribose] synthase 3
 gi|9758653|dbj|BAB09119.1| seed maturation protein PM38 protein [Arabidopsis thaliana]
          Length = 815

 Score = 42.9 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGD-----NPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           ++ + + G  VS  +      ++V          SK+ +A + G+ +++E   +  ++++
Sbjct: 207 KKKIERNGGKVSNTVQG-VTCLVVSPAERERGGTSKMVEAMEQGLPVVSEAWLIDSVEKH 265

Query: 722 NT 723
             
Sbjct: 266 EA 267


>gi|330508988|ref|YP_004385416.1| DEAD/DEAH box helicase domain-containing protein [Methanosaeta
           concilii GP-6]
 gi|328929796|gb|AEB69598.1| DEAD/DEAH box helicase domain protein [Methanosaeta concilii GP-6]
          Length = 762

 Score = 42.9 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 10/86 (11%)

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
                            R +  ++      I  VG  +AR L +++ S +          
Sbjct: 679 RERRAGHEPKLHGHKTARTLKEQQEYLISAIPSVGPSVARKLLRHFGSIEKVIAASK--- 735

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVE 614
                    L  V +VG  IA+ I E
Sbjct: 736 -------EELQEVDMVGPKIAERIRE 754


>gi|258513611|ref|YP_003189833.1| DNA integrity scanning protein DisA [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777316|gb|ACV61210.1| protein of unknown function DUF147 [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 359

 Score = 42.9 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 46/152 (30%), Gaps = 5/152 (3%)

Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN 526
           + ++ ++ ++S        +  Q  +      +  F +    D  T+   +      I  
Sbjct: 199 RIVKEIEKYISELGTEGRLITMQLEELLANVAEEGFLV--IQDYGTVLEEKPP--QSIMK 254

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEIN 585
           I+G            I +         I    +   G  I   L +  +   +N  Q   
Sbjct: 255 IIGSWPAEDLLDLSLIARALGYPGSSGILDQSVFPRGYRILEKLPRLPFPVIENLVQRFG 314

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            +          L  V  +G++ A++I +   
Sbjct: 315 TLSKVLVATIEELDEVEGIGEVRARSIKKGLS 346


>gi|220928256|ref|YP_002505165.1| excinuclease ABC subunit C [Clostridium cellulolyticum H10]
 gi|254764928|sp|B8I8F2|UVRC_CLOCE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|219998584|gb|ACL75185.1| excinuclease ABC, C subunit [Clostridium cellulolyticum H10]
          Length = 613

 Score = 42.9 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 10/59 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           I  +G    ++L K++ S     +           D   L  V  + + IA+ I E++ 
Sbjct: 565 IEGIGQTRKKALIKHFKSVAAIRKA----------DIAQLQEVNGISEKIAKNIYEYFN 613


>gi|297570214|ref|YP_003691558.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296926129|gb|ADH86939.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 85

 Score = 42.9 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
             +  N  D   L  +P +G + A AI+E+ +N     ++E L++
Sbjct: 21  AALNINTADQEQLQSLPGIGPVTAAAIIEYRENNGEFASIEELVQ 65


>gi|169830397|ref|YP_001716379.1| DNA integrity scanning protein DisA [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637241|gb|ACA58747.1| protein of unknown function DUF147 [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 358

 Score = 42.9 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 17/51 (33%)

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
           Y   +N      N+    N     L  V  +G+  A++I E      N   
Sbjct: 303 YPVVENLVSVFANLNKVLNASLDELDEVEGIGETRARSIKEGLSRYWNQLL 353


>gi|257386865|ref|YP_003176638.1| Hef nuclease [Halomicrobium mukohataei DSM 12286]
 gi|257169172|gb|ACV46931.1| helicase domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 851

 Score = 42.9 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 10/57 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +  VG   AR+L +++ S +               D   L+ V  VG++ A+   +
Sbjct: 797 SVAEVGPVTARALLEHFGSVEAVMTA----------DEDELMDVDGVGEVTAERFRD 843


>gi|169834756|ref|YP_001715955.1| hypothetical protein CLK_A0328 [Clostridium botulinum A3 str.
          Loch Maree]
 gi|169408863|gb|ACA57273.1| hypothetical protein CLK_A0328 [Clostridium botulinum A3 str.
          Loch Maree]
          Length = 125

 Score = 42.9 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 25/53 (47%)

Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66
            +  + ++   ++I  H   YY+ +  +I D  Y+   R  + + + +PDL 
Sbjct: 30 ENEIIELINKRRRQILVHSCIYYRLNDNLIDDYTYNEWARELENLQNMYPDLL 82


>gi|160902691|ref|YP_001568272.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Petrotoga mobilis SJ95]
 gi|160360335|gb|ABX31949.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Petrotoga mobilis SJ95]
          Length = 171

 Score = 42.9 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 7/126 (5%)

Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584
           E ++    +        IN R+          + +  +G +   ++  Y    +   + +
Sbjct: 50  EELIRLPGIGPAKAQAIINYRQEKGFREIEDIMNVSGIGEKTFSNIKDYIYLSEVIYEIV 109

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
           +  I  N      L  +P +G + AQ I+E+      I +++ L K   PS         
Sbjct: 110 DEKININEASSEELESLPGIGKVSAQKIIEYRAIKP-ISSLDDLKKLGIPSSTIE----- 163

Query: 645 SEIENK 650
            +IE K
Sbjct: 164 -KIEGK 168



 Score = 37.5 bits (85), Expect = 9.3,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 16/47 (34%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624
                   N I         LIR+P +G   AQAI+ + Q       
Sbjct: 32  DRLNSYQENKIDLLTASVEELIRLPGIGPAKAQAIINYRQEKGFREI 78


>gi|242044802|ref|XP_002460272.1| hypothetical protein SORBIDRAFT_02g025780 [Sorghum bicolor]
 gi|241923649|gb|EER96793.1| hypothetical protein SORBIDRAFT_02g025780 [Sorghum bicolor]
          Length = 528

 Score = 42.9 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
                   +  TG L K  R + +E   +LG   S  L  K   ++V
Sbjct: 64  DGPFAGLVICVTG-LSKEARVQVKEATERLGGEYSGSLHPKCTHLVV 109


>gi|332216443|ref|XP_003257361.1| PREDICTED: laminin subunit beta-2 [Nomascus leucogenys]
          Length = 1678

 Score = 42.9 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 45/457 (9%), Positives = 85/457 (18%), Gaps = 52/457 (11%)

Query: 186  EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAAS------------GILRRLNPTDIT 233
            +  G+       F  L  +    G+  + + R                  L   + T   
Sbjct: 725  KTSGQCLCRTGAF-GLRCDRCQRGQWGFPSCRPCVCNGHADECNTHTGACLGCRDHTGGE 783

Query: 234  RYLNFF---------VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSY 284
                            +G         +G                +     +   G    
Sbjct: 784  HCERCIAGFHGDPRLPYGGQCRPCPCPEGPGSQRHFATSCHRDEYSQQIVCHCRAGYTGL 843

Query: 285  YNE----------MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQ 334
              E           +        +  G +  +D  +     G+  R              
Sbjct: 844  RCEACAPGHFGDPSRPGGRCQLCECSGNIDPMDPDACDPHTGQCLRC-LHHTEGPHCAHC 902

Query: 335  ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRD 394
                      Q                N+ G         ++ +          +   + 
Sbjct: 903  KPGFHGQAARQSCHR---------CTCNLLGTNPQQCPSPDQCHCDPSSGQCPCLPNVQG 953

Query: 395  I---RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC-----QSRVVRDLN 446
                R         +G             R P    F+    C         S       
Sbjct: 954  PSCDRCAPNFWNLTSGHGCQPCACHPSRARGPTCNEFTGQCHCRAGFGGRTCSECQELHW 1013

Query: 447  PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
               G    A  C      + Q      H   R   +     +     F            
Sbjct: 1014 GDPGLQCRACDCDSRGIDTPQCHRSTGHCSCRPGVSGVRCDQ-CARGFSGIFPACHPCHA 1072

Query: 507  PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
                +  +  Q  +           ++  T +  +         E+     GI       
Sbjct: 1073 CFGDWD-RVVQDLAAHTRRLEQRAQELQQTGVLGAFESSFWHMQEKLRIVQGIVGARNTS 1131

Query: 567  ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
            A S A+   + +   +EI     H       L  V  
Sbjct: 1132 ATSTAQLVEATEALRREIGEATEHLTQLEEELTDVQD 1168


>gi|296269970|ref|YP_003652602.1| excinuclease ABC subunit C [Thermobispora bispora DSM 43833]
 gi|296092757|gb|ADG88709.1| excinuclease ABC, C subunit [Thermobispora bispora DSM 43833]
          Length = 644

 Score = 42.9 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 10/79 (12%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                + ++ +     +     GI  +G    ++L +++ S +                 
Sbjct: 569 HRFAITYHRSKRSKALKESALDGIPGLGPARRQALLRHFGSLKRLRDATE---------- 618

Query: 596 LSLIRVPLVGDIIAQAIVE 614
             +  VP +G   A+AIV 
Sbjct: 619 EEIRAVPGIGPATAEAIVS 637


>gi|332018204|gb|EGI58809.1| Laminin subunit beta-1 [Acromyrmex echinatior]
          Length = 1757

 Score = 42.9 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/459 (7%), Positives = 88/459 (19%), Gaps = 32/459 (6%)

Query: 160  GEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNA 219
            G         + T       N       + E            +                
Sbjct: 809  GVGALDNFCDVETGRCKCRPNTYGRTCGQCEPGFWNFPHCQRCECHGHADSCDSKTGACI 868

Query: 220  ASGILRRLNPTDITRYLNF----FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQA 275
                    +  D      +        +   +      +                     
Sbjct: 869  NCRDFTTGHNCDRCVDDFYGDPRIGVDIPCRACPCPGTRESGHSYANSCSLDSITQDVVC 928

Query: 276  NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQA 335
              F G      E  +       +I G   ++   +    L                    
Sbjct: 929  ECFEGYSGPRCEHCAENYFGNPEIPGGSCQLCNCNNNTDLRRVGNCDPHT---------- 978

Query: 336  STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395
                L                 +      G  +      +    +          G  D 
Sbjct: 979  -GHCLQCLFNTD-----GYTCEVCKAGFYGDALR----QDCQDCRCNVLGTDKTAGSCDH 1028

Query: 396  RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455
            R G    +       P V+  + +    +    +    C  C+  VV  ++ +       
Sbjct: 1029 RTGQCPCL-------PHVIGQLCDACEENHWRIASGQGCDPCECDVVGSISDRCNPYDGT 1081

Query: 456  HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQR 515
              C  G         +   + + +                + +     + +       ++
Sbjct: 1082 CECKPGFGGRRCNECQTNFWGNPNVECYPCECDVIGSASQQCDRETG-VCVCHKGIGGEK 1140

Query: 516  RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575
              Q       +               +      +    +     R          ++ + 
Sbjct: 1141 CDQCDRGYHGDAPQCSPCGECFDNWDLILDGLRNKTYAVIQEASRIQKVGTTGVYSQEFD 1200

Query: 576  SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
              +    EI ++I++       L  +  + + +A+ I E
Sbjct: 1201 DMEESLNEIQDLISNTTIRSQDLDALDNLAEELAKNISE 1239


>gi|145296316|ref|YP_001139137.1| hypothetical protein cgR_2231 [Corynebacterium glutamicum R]
 gi|140846236|dbj|BAF55235.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 196

 Score = 42.9 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%)

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635
           S    A   + +I+ N      L+ +P VG+  AQAI++F ++      VE LL+     
Sbjct: 124 SVDAAATSASGLISLNTATVADLVTLPGVGEKTAQAIIDFRESNGGFSTVEDLLQVKGIG 183

Query: 636 IGRHEKNVS 644
             + E+   
Sbjct: 184 PSKFEQISG 192


>gi|21325119|dbj|BAB99741.1| DNA uptake protein and related DNA-binding proteins
           [Corynebacterium glutamicum ATCC 13032]
          Length = 194

 Score = 42.9 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%)

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635
           S    A   + +I+ N      L+ +P VG+  AQAI++F ++      VE LL+     
Sbjct: 122 SVDAAATSASGLISLNTATVADLVTLPGVGEKTAQAIIDFRESNGGFSTVEDLLQVKGIG 181

Query: 636 IGRHEKNVS 644
             + E+   
Sbjct: 182 PSKFEQISG 190


>gi|19553547|ref|NP_601549.1| DNA uptake protein [Corynebacterium glutamicum ATCC 13032]
 gi|62391191|ref|YP_226593.1| DNA uptake protein or related DNA-binding protein [Corynebacterium
           glutamicum ATCC 13032]
 gi|41326531|emb|CAF21013.1| secreted DNA uptake protein or related DNA-binding protein
           [Corynebacterium glutamicum ATCC 13032]
          Length = 217

 Score = 42.9 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%)

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635
           S    A   + +I+ N      L+ +P VG+  AQAI++F ++      VE LL+     
Sbjct: 145 SVDAAATSASGLISLNTATVADLVTLPGVGEKTAQAIIDFRESNGGFSTVEDLLQVKGIG 204

Query: 636 IGRHEKNVS 644
             + E+   
Sbjct: 205 PSKFEQISG 213


>gi|326203844|ref|ZP_08193706.1| excinuclease ABC, C subunit [Clostridium papyrosolvens DSM 2782]
 gi|325985942|gb|EGD46776.1| excinuclease ABC, C subunit [Clostridium papyrosolvens DSM 2782]
          Length = 613

 Score = 42.9 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 10/59 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           +  +G    ++L +++ S     +           D   L  V  + + IA+ I E++ 
Sbjct: 565 VEGIGQTRKKALIRHFKSVAAIKKA----------DVAQLQEVDGISEKIAKKIYEYFN 613


>gi|330920911|ref|XP_003299202.1| hypothetical protein PTT_10147 [Pyrenophora teres f. teres 0-1]
 gi|311327216|gb|EFQ92702.1| hypothetical protein PTT_10147 [Pyrenophora teres f. teres 0-1]
          Length = 665

 Score = 42.9 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN----PGSKLEKAQ 702
           +    +  +G      +   Q  +T LGA  ++ ++  T  +I  +       +K+  A 
Sbjct: 16  LSGCNIATSGRFSGTSQAAVQSRLTSLGASTASSVTPDTTHLIATEKDYESNSTKVNAAA 75

Query: 703 QLGVKIMNEEQFLF 716
             GV ++   ++L 
Sbjct: 76  THGVPVVTL-EWLD 88


>gi|256832484|ref|YP_003161211.1| excinuclease ABC, C subunit [Jonesia denitrificans DSM 20603]
 gi|256686015|gb|ACV08908.1| excinuclease ABC, C subunit [Jonesia denitrificans DSM 20603]
          Length = 647

 Score = 42.9 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 13/111 (11%)

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
           P D F +   +Q++      +L              +++R           GI  +G   
Sbjct: 546 PHDEFPVILERQSA---GLYLLQHLRDEAHRFAIKAHRKRRSQGMTVSQLDGIPGLGPTR 602

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            ++L  ++ S +   +               +  V  +G   A  +VEF  
Sbjct: 603 VKALLNHFGSVKKIKEA----------SVDDIAAVKGIGRTTATQVVEFLH 643


>gi|89096393|ref|ZP_01169286.1| glucose-1-dehydrogenase [Bacillus sp. NRRL B-14911]
 gi|89089247|gb|EAR68355.1| glucose-1-dehydrogenase [Bacillus sp. NRRL B-14911]
          Length = 261

 Score = 42.9 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 24/57 (42%)

Query: 647 IENKKLVFTGTLQKIQR------------------------HKAQEYVTQLGAVVSA 679
           +E K +V TG    + R                         +  E +   G   S+
Sbjct: 5   LEGKTVVITGGNSGLGRAMAERFGAEKSNVVINYHSNDDNIDEIIEKIENAGGKASS 61


>gi|315284436|ref|ZP_07872157.1| DNA ligase [Listeria marthii FSL S4-120]
 gi|313611919|gb|EFR86341.1| DNA ligase [Listeria marthii FSL S4-120]
          Length = 39

 Score = 42.5 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 641 KNVSSEIENKKLVFTGTLQKIQRH 664
           +        K +V TG L+K+ R+
Sbjct: 14  ETEELVFAGKTVVLTGKLEKLTRN 37


>gi|253577150|ref|ZP_04854470.1| DNA-binding protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843394|gb|EES71422.1| DNA-binding protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 359

 Score = 42.5 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 18/51 (35%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
             N  +    +          L  V  +G++ A++I E  +  +    ++ 
Sbjct: 307 IHNLVERFGRLPNVMMASIEELDEVDGIGEVRARSIKEGLKRLQEQVFIDR 357


>gi|242279487|ref|YP_002991616.1| excinuclease ABC, C subunit [Desulfovibrio salexigens DSM 2638]
 gi|242122381|gb|ACS80077.1| excinuclease ABC, C subunit [Desulfovibrio salexigens DSM 2638]
          Length = 602

 Score = 42.5 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 10/62 (16%)

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
           L +  +G + AR L   + S Q   +               L  V  +G   AQ I + +
Sbjct: 550 LSLPGIGPKTARLLWDEFGSVQKMKEA----------SVEDLSNVQGIGKKRAQQIFDAF 599

Query: 617 QN 618
           + 
Sbjct: 600 RE 601


>gi|93003306|tpd|FAA00236.1| TPA: zinc finger protein [Ciona intestinalis]
          Length = 565

 Score = 42.5 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           +V  G L K  R + ++ V  LG  V+  L++
Sbjct: 381 VVIIGKLSK-PRDELKQLVENLGGSVTTSLNK 411


>gi|198412483|ref|XP_002122941.1| PREDICTED: Zn-finger (NAD(+) ADP-ribosyltransferase)-3, partial
           [Ciona intestinalis]
          Length = 567

 Score = 42.5 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           +V  G L K  R + ++ V  LG  V+  L++
Sbjct: 383 VVIIGKLSK-PRDELKQLVENLGGSVTTSLNK 413


>gi|86608727|ref|YP_477489.1| excinuclease ABC subunit C [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|119367851|sp|Q2JM21|UVRC_SYNJB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|86557269|gb|ABD02226.1| excinuclease ABC, C subunit [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 623

 Score = 42.5 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 10/50 (20%)

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           + L + + S                     L +VP +G  IA+ I  ++ 
Sbjct: 570 KLLMEEFRSIARIQVASE----------DQLAQVPGIGPKIARQIYRYFH 609


>gi|147903139|ref|NP_001081571.1| poly [ADP-ribose] polymerase 1 [Xenopus laevis]
 gi|84569962|gb|AAI10779.1| PARP protein [Xenopus laevis]
          Length = 1011

 Score = 42.5 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 28/111 (25%)

Query: 634 PSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           P     E       + N K++  G L K  + + +  +  LG  V+         +S  T
Sbjct: 373 PKPTVEETFPEGKPLTNTKVLLIGKLSK-NKDEVKTLIEGLGGKVAGSAHKANLCIS--T 429

Query: 686 DIIIVGDNPGSKLE--KAQQLGVKIMNEEQFLF----------LLQQYNTT 724
           +  +  +    K+E  KA    V++++ + FL           LL Q+  +
Sbjct: 430 NKEV--EKMSKKMEEVKAA--NVRVVS-DDFLKEVESGKSVQELLSQFGIS 475


>gi|289522347|ref|ZP_06439201.1| late competence protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504183|gb|EFD25347.1| late competence protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 255

 Score = 42.5 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
            ++++  N+     L  +P +G   AQAI+ + ++     +VE LL+       + EK
Sbjct: 188 SSDLVDLNSATAEMLQSLPGIGPKTAQAILSYREDKGGFRSVEELLEVKGIGPKKMEK 245


>gi|18978387|ref|NP_579744.1| Hef nuclease [Pyrococcus furiosus DSM 3638]
 gi|18894225|gb|AAL82139.1| ATP-dependent RNA helicase, putative [Pyrococcus furiosus DSM 3638]
          Length = 764

 Score = 42.5 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 10/56 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           G+ HV A +AR L K++ S +                   L++V  +G+ IA+ I 
Sbjct: 707 GLPHVSATLARRLLKHFGSVERVFTA----------SVAELMKVEGIGEKIAKEIR 752


>gi|291240190|ref|XP_002740003.1| PREDICTED: neurogenic locus notch homolog protein 2-like
            [Saccoglossus kowalevskii]
          Length = 3104

 Score = 42.5 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 40/374 (10%), Positives = 76/374 (20%), Gaps = 37/374 (9%)

Query: 156  DGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL------------ND 203
            DG +G      I    + P         + + R E                       N+
Sbjct: 1965 DGFTGRYCHIDINECQSSPCRYGACYDALNDYRCECITGFTGRNCDSNLDECISSPCQNN 2024

Query: 204  EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263
                 G   Y          +      D       F  G+          Q  +    + 
Sbjct: 2025 ATCIDGFDKYQCVCQPGFRGIHCEVDEDECMSFPCFNGGMCVDLINDFHCQCPLGFGGKT 2084

Query: 264  LGFPVNNGVRQANTFHGIV-----SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
             G  ++        F+         Y    ++  +    D+D      +         + 
Sbjct: 2085 CGTNIDECATNQCRFNSTCVDLVGDYTCLCQAGYTGRDCDVDIDECNSNPCLHDGHCLDD 2144

Query: 319  ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
                  +    F        + D D              +    +               
Sbjct: 2145 VNIYSCICEVGFTGYNCEINIDDCDPNPCMNNS------VCRDLVNDFECICEVGFTGTV 2198

Query: 379  IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438
                           D+ + D V          + +        P+              
Sbjct: 2199 C--------------DVNINDCVSDPCRNRGTCEDLVNNYYCICPEGYAGKNCQLNIDDC 2244

Query: 439  SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
            S             +AA+ C   +  +    E      S +     G     ++ FF   
Sbjct: 2245 SSAPCMHGGTCLDGIAAYTCQCPIGFAGLLCEINIDDCSPNPCENGGTCMDLVNGFFCMC 2304

Query: 499  DPAFSIRIPADIFT 512
             P F  RI ++ F 
Sbjct: 2305 RPGFVGRICSNNFD 2318


>gi|115399516|ref|XP_001215347.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114192230|gb|EAU33930.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 779

 Score = 42.5 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 646 EIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
                 +  TG  + +  R+  Q   T  GA     L++    +I     G K + A Q 
Sbjct: 107 TFAGLSICITG-FEDMAFRNYIQNTATANGAEFRKDLTKSVTHLIARSPEGQKYKFATQW 165

Query: 705 GVKIMNEEQFLF-----L-LQQYNTTLRIHDD 730
            +KI+  + F       + L++    L + +D
Sbjct: 166 NIKIVTMKWFTDSLERGMTLEETLYDLHLPED 197


>gi|315655489|ref|ZP_07908388.1| UvrABC system protein C [Mobiluncus curtisii ATCC 51333]
 gi|315490144|gb|EFU79770.1| UvrABC system protein C [Mobiluncus curtisii ATCC 51333]
          Length = 693

 Score = 42.5 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 10/54 (18%)

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           ++L K++ S +   +               +  VP  G   A+ +V F  N  N
Sbjct: 646 KALLKHFGSVKRLREASAA----------EIAEVPGFGLKTAENLVAFLNNSGN 689


>gi|302390929|ref|YP_003826749.1| DNA integrity scanning, DisA, linker region [Acetohalobium
           arabaticum DSM 5501]
 gi|302203006|gb|ADL11684.1| DNA integrity scanning, DisA, linker region [Acetohalobium
           arabaticum DSM 5501]
          Length = 373

 Score = 42.5 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +N     ++  A  N     L  V  VG++ AQAI E  +  R+   +E 
Sbjct: 320 IENLVDNFSDFQAILNASIDELDDVDGVGEVRAQAIKEGLKRLRDQSLLEQ 370


>gi|153005348|ref|YP_001379673.1| excinuclease ABC subunit C [Anaeromyxobacter sp. Fw109-5]
 gi|189038018|sp|A7HD93|UVRC_ANADF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|152028921|gb|ABS26689.1| excinuclease ABC, C subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 716

 Score = 42.5 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +G    R+L +++ + +   +               + +V   G   A+A+ EF+  
Sbjct: 612 ISGIGEGRKRALLRHFGALRRVKEAT----------LDEISQVDGFGPKQARAVFEFFHP 661

Query: 619 PR 620
           PR
Sbjct: 662 PR 663


>gi|16330212|ref|NP_440940.1| excinuclease ABC subunit C [Synechocystis sp. PCC 6803]
 gi|3024785|sp|P73580|UVRC_SYNY3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|1652700|dbj|BAA17620.1| excinuclease ABC subunit C [Synechocystis sp. PCC 6803]
          Length = 626

 Score = 42.5 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 16/90 (17%)

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
                    +    ++K R   L+  I  LG         + L  ++ S     +     
Sbjct: 549 EAHRFAVSFHRQQRLSKSRRSRLDE-IPGLGFSRQ-----KQLLAHFRSLDYIREA---- 598

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                     L  VP +G  +AQ I +++ 
Sbjct: 599 ------SVKQLQEVPGIGPQLAQTIYDYFH 622


>gi|78100875|pdb|1X2I|A Chain A, Crystal Structure Of Archaeal XpfMUS81 HOMOLOG, HEF FROM
           Pyrococcus Furiosus, Helix-Hairpin-Helix Domain
 gi|78100876|pdb|1X2I|B Chain B, Crystal Structure Of Archaeal XpfMUS81 HOMOLOG, HEF FROM
           Pyrococcus Furiosus, Helix-Hairpin-Helix Domain
          Length = 75

 Score = 42.5 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 10/56 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           G+ HV A +AR L K++ S +                   L++V  +G+ IA+ I 
Sbjct: 18  GLPHVSATLARRLLKHFGSVERVFTA----------SVAELMKVEGIGEKIAKEIR 63


>gi|198463258|ref|XP_001352755.2| GA15220 [Drosophila pseudoobscura pseudoobscura]
 gi|198151181|gb|EAL30255.2| GA15220 [Drosophila pseudoobscura pseudoobscura]
          Length = 1204

 Score = 42.5 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/257 (10%), Positives = 68/257 (26%), Gaps = 11/257 (4%)

Query: 110 FITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRA 169
           +   +    +K    S+ +T     DG  I I YE G  +  ++ G+   G+++      
Sbjct: 105 WYEEMTNDRKKSTVASMSWTS----DGAKICIVYEDGAIIVGSVDGNRIFGKELKGTHLT 160

Query: 170 IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI--AVGRKPYANPRNAASGILRRL 227
                    L +  +      +Y ++ +F    +       G       R A+       
Sbjct: 161 GVQWSPDNRLILFALASGECHLYDNQGNFAMKLNIQCLKLNGSSSARGQRIASICWFSGR 220

Query: 228 NPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE 287
           +     R +    + +GK   +  +   E           + N   + N    +++    
Sbjct: 221 SSNRRNRPVLAICYEIGKVQIMRNENDDEPAIF----DTKMRNVDAKWNHDGTVLAICGT 276

Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347
                       +  V          +  +   S    +S +    + +  +        
Sbjct: 277 TLEQTVPPAQRDNNQVCFYSPLGRIYRTLKVPGSDITSLSWEGKSLRIAMAVDSFIY-FA 335

Query: 348 RTGILTPVARLEPVNIG 364
                      E   + 
Sbjct: 336 NIRPDYIWCYFEKTVVF 352


>gi|126463495|ref|YP_001044609.1| excinuclease ABC subunit C [Rhodobacter sphaeroides ATCC 17029]
 gi|126105159|gb|ABN77837.1| Excinuclease ABC subunit C [Rhodobacter sphaeroides ATCC 17029]
          Length = 623

 Score = 42.5 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 10/77 (12%)

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
             ++ +            I  VGA   R+L  ++ S +  A+               L  
Sbjct: 555 GAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARA----------GVPDLCA 604

Query: 601 VPLVGDIIAQAIVEFYQ 617
           V  + + +AQ+I +F+ 
Sbjct: 605 VEGISETMAQSIHDFFH 621


>gi|113677594|ref|NP_001038407.1| poly [ADP-ribose] polymerase 1 [Danio rerio]
 gi|56207903|emb|CAI20897.1| novel protein similar to vertebrate ADP-ribosyltransferase (NAD+;
           poly (ADP-ribose) polymerase) (ADPRT) [Danio rerio]
          Length = 1013

 Score = 42.5 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 13/95 (13%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKTDIIIVG 691
            E      +   KL+  G L K  +   +++V  LG  ++         +S K +I    
Sbjct: 382 TEAPADKPLTGMKLLAVGKLSK-NKDDLKKFVEDLGGKITGTASKAALCISSKKEI---- 436

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           +    K+E+ +  GV+++  + FL  +++    L+
Sbjct: 437 EKMSKKMEEVRDAGVRVV-ADDFLTDIKESGKALQ 470


>gi|71679667|gb|AAI00002.1| Poly (ADP-ribose) polymerase family, member 1 [Danio rerio]
          Length = 1011

 Score = 42.5 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 13/95 (13%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKTDIIIVG 691
            E      +   KL+  G L K  +   +++V  LG  ++         +S K +I    
Sbjct: 380 TEAPADKPLTGMKLLAVGKLSK-NKDDLKKFVEDLGGKITGTASKAALCISSKKEI---- 434

Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726
           +    K+E+ +  GV+++  + FL  +++    L+
Sbjct: 435 EKMSKKMEEVRDAGVRVV-ADDFLTDIKESGKALQ 468


>gi|281202484|gb|EFA76686.1| TPR repeat-containing protein [Polysphondylium pallidum PN500]
          Length = 1624

 Score = 42.5 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 667 QEYVTQLGAVVSAILSRKTDIIIV-GDNPG-SK--LEKAQQLGVKIMN 710
           +EY+ + GA ++   S+  D +I  G++   +K  L  A    + I+N
Sbjct: 24  KEYLEKHGATIAKRFSKNVDYVIASGESISANKYPLTIATANNIPIIN 71


>gi|309364838|emb|CAP24374.2| CBR-PIS-1 protein [Caenorhabditis briggsae AF16]
          Length = 1052

 Score = 42.5 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            V  +GA ++   SRK D++I   +P  K+ KAQ+  V ++N
Sbjct: 640 MVEAMGAKITPFFSRKNDLLIAK-SPSEKVTKAQEWKVPVVN 680


>gi|212224218|ref|YP_002307454.1| Hef nuclease [Thermococcus onnurineus NA1]
 gi|212009175|gb|ACJ16557.1| helicase-associated endonuclease for fork-structured DNA
           [Thermococcus onnurineus NA1]
          Length = 789

 Score = 42.5 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 10/56 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           G+ +V A +A+ L K++ + +                   L  V  +G   A+ I 
Sbjct: 733 GLPNVSATLAKRLLKHFGNVERVFTATE----------EELQEVEGIGPKKAREIR 778


>gi|268537308|ref|XP_002633790.1| C. briggsae CBR-PIS-1 protein [Caenorhabditis briggsae]
          Length = 1056

 Score = 42.5 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            V  +GA ++   SRK D++I   +P  K+ KAQ+  V ++N
Sbjct: 644 MVEAMGAKITPFFSRKNDLLIAK-SPSEKVTKAQEWKVPVVN 684


>gi|254173751|ref|ZP_04880423.1| Type III restriction enzyme, res subunit family [Thermococcus sp.
           AM4]
 gi|214032443|gb|EEB73273.1| Type III restriction enzyme, res subunit family [Thermococcus sp.
           AM4]
          Length = 807

 Score = 42.5 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 10/56 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           G+ +V + +A+ L K++ + +                   L  V  +G   A+ I 
Sbjct: 750 GLPNVSSTLAKRLLKHFGNVERVFTATE----------EELKEVEGIGPKKAREIR 795


>gi|304389347|ref|ZP_07371312.1| excision endonuclease subunit UvrC [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327465|gb|EFL94698.1| excision endonuclease subunit UvrC [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 693

 Score = 42.5 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 10/54 (18%)

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           ++L +++ S +   +               +  VP  G   A+ +V F  N  N
Sbjct: 646 KALLRHFGSVKRLREASAA----------EIAEVPGFGLKTAENLVAFLNNSGN 689


>gi|240047517|ref|YP_002960905.1| hypothetical protein MCJ_003940 [Mycoplasma conjunctivae HRC/581]
 gi|239985089|emb|CAT05082.1| HYPOTHETICAL PROTEIN MCJ_003940 [Mycoplasma conjunctivae]
          Length = 1941

 Score = 42.5 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 58/162 (35%), Gaps = 14/162 (8%)

Query: 477  SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536
            SR  F +     Q +D F         I+      ++Q +++      E +    +    
Sbjct: 1536 SRFIFKLLTFMSQNIDKFKNQTTFIGLIKTWIQNQSVQAKKELKQYIWEILQFAVNDEHM 1595

Query: 537  NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDW 595
                S+   +N++       + I  +     + +AK++    N   +E   +    +   
Sbjct: 1596 VKVVSLVVAKNLN-------INIDKIKDTEYQKIAKFFQEVVNLGIEEPGIVSQVIDKVL 1648

Query: 596  LSLIRVPLVGD------IIAQAIVEFYQNPRNICAVEALLKE 631
             ++ ++           I A + V+F+ N   I  +++++ E
Sbjct: 1649 EAIQKINDFSPASLTQIIQAASGVDFFANSDFIALLDSMISE 1690


>gi|28212198|ref|NP_783142.1| DNA integrity scanning protein DisA [Clostridium tetani E88]
 gi|75541601|sp|Q890L8|DISA_CLOTE RecName: Full=DNA integrity scanning protein disA
 gi|28204642|gb|AAO37079.1| putative DNA-binding protein [Clostridium tetani E88]
          Length = 360

 Score = 42.5 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 20/51 (39%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +N  +    + A     +  L +V  +G+  A+AI    +  +    ++ 
Sbjct: 305 IENVVKNFKELKAVMEASYEQLDKVEGIGEARAKAIKNGLRRLKEQANIDK 355


>gi|225556539|gb|EEH04827.1| RNA polymerase II C-terminal domain phosphatase component
           [Ajellomyces capsulatus G186AR]
          Length = 871

 Score = 42.1 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 653 VFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKI 708
           VF+G L             +    GA++S  +S KT  ++ G N  +K+ +A +   +KI
Sbjct: 501 VFSGVLPLGTDTQNADISLWAKSFGAIISHKISSKTTHLVAGRNRTAKVREATRYPNIKI 560

Query: 709 MNEEQFL------FLLQQYNTTLRIHDDD 731
           +  +  L        L +    + +H +D
Sbjct: 561 VTVQWLLDSITQWKRLDEEPYLVPVHPED 589


>gi|197122985|ref|YP_002134936.1| excinuclease ABC subunit C [Anaeromyxobacter sp. K]
 gi|229557970|sp|B4UGB5|UVRC_ANASK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|196172834|gb|ACG73807.1| excinuclease ABC, C subunit [Anaeromyxobacter sp. K]
          Length = 707

 Score = 42.1 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 10/62 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +G    R+L +++ + +   +               L +V   G   A A+  F+  
Sbjct: 604 IPGIGEGRKRALLRHFGALRRVREATP----------EELAQVEGFGPRQAAAVHAFFHR 653

Query: 619 PR 620
           P 
Sbjct: 654 PD 655


>gi|172036349|ref|YP_001802850.1| excinuclease ABC subunit C [Cyanothece sp. ATCC 51142]
 gi|171697803|gb|ACB50784.1| excinuclease ABC subunit C [Cyanothece sp. ATCC 51142]
          Length = 620

 Score = 42.1 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 16/90 (17%)

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
                    +    + K R+  L+  I  LG +       + L  ++ S     +     
Sbjct: 545 EAHRFAVTFHRQQRLKKSRHSRLDD-IPGLGFQRQ-----KQLLAHFHSIDYIREA---- 594

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                     L  V  VG  +A+ I +++ 
Sbjct: 595 ------SIEKLQEVSGVGPALAREIYDYFH 618


>gi|78042711|ref|YP_361151.1| DNA integrity scanning protein DisA [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|119365931|sp|Q3A9N3|DISA_CARHZ RecName: Full=DNA integrity scanning protein disA
 gi|77994826|gb|ABB13725.1| putative DNA-binding protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 352

 Score = 42.1 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
            +N  Q   N+    +     L  V  +G++ A++I E  +  R  
Sbjct: 302 IENLVQTFGNLKNIMSASIEELDDVEGIGEVRARSIKEGLKKLREQ 347


>gi|294101992|ref|YP_003553850.1| excinuclease ABC, C subunit [Aminobacterium colombiense DSM 12261]
 gi|293616972|gb|ADE57126.1| excinuclease ABC, C subunit [Aminobacterium colombiense DSM 12261]
          Length = 491

 Score = 42.1 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 60/240 (25%), Gaps = 28/240 (11%)

Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441
               G  +           V+V   G   P +              F         +   
Sbjct: 274 WRIDGFDISHMAGHETYGVVVVFEQGVSNPSLYRRFKVRTVEGIDDFRSIEEVVKRRYSK 333

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
           + + N    +L              Q     K         I  +   + +      +  
Sbjct: 334 MLENNEPLPQL------ILIDGGPIQLEFAKKALSELKMEKIPAISLAKREELIYHNEKE 387

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             IR+      L+  Q+           F   S       +  R  +          I  
Sbjct: 388 PPIRLDWTDPVLRLLQRVRDESH----RFAIKSHRRGRGMVLTRSVLE--------EIPG 435

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           VG  +A SL   + S +  A                L++V  +G ++A+ I  F++   N
Sbjct: 436 VGKHMAASLLSSFGSVKKIAVLTP----------EELMQVKGIGPVLAKNIAAFFRGEDN 485


>gi|321464644|gb|EFX75651.1| hypothetical protein DAPPUDRAFT_55885 [Daphnia pulex]
          Length = 1004

 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
           +EV+    + +      +E  K +    L+K  + K +  + +L   V + ++ K   +I
Sbjct: 370 EEVNVKKEKSDSKRPPTLEGLKFIVDSKLEK-SKEKVEAEIKKLLGSVGSRVTEKIAAVI 428

Query: 690 -----VGDNPGSKLEKAQQLGVKIMN 710
                + +   SKL+KA +LG+ +++
Sbjct: 429 STKDNLKEKD-SKLKKASELGIHVVD 453


>gi|219853501|ref|YP_002470623.1| hypothetical protein CKR_0158 [Clostridium kluyveri NBRC 12016]
 gi|219567225|dbj|BAH05209.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 360

 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 18/51 (35%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
             N  +    +       +  L RV  +G+  A+AI    +  R    ++ 
Sbjct: 308 MDNLVKNFKELKEIMEASYEDLDRVEGIGEARARAIKNGLRRLREQIMIDN 358


>gi|57640956|ref|YP_183434.1| Hef nuclease [Thermococcus kodakarensis KOD1]
 gi|57159280|dbj|BAD85210.1| helicase-associated endonuclease for fork-structured DNA
           [Thermococcus kodakarensis KOD1]
          Length = 804

 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 10/56 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           G+ +V A +A+ L K++ + +                   L  V  +G   A+ I 
Sbjct: 751 GLPNVSATLAKRLLKHFGNVERVFTATE----------EELKEVEGIGPKKAREIR 796


>gi|153952836|ref|YP_001393601.1| DNA integrity scanning protein DisA [Clostridium kluyveri DSM 555]
 gi|189083127|sp|A5N4M2|DISA_CLOK5 RecName: Full=DNA integrity scanning protein disA
 gi|146345717|gb|EDK32253.1| Predicted DNA-binding protein [Clostridium kluyveri DSM 555]
          Length = 354

 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 18/51 (35%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
             N  +    +       +  L RV  +G+  A+AI    +  R    ++ 
Sbjct: 302 MDNLVKNFKELKEIMEASYEDLDRVEGIGEARARAIKNGLRRLREQIMIDN 352


>gi|218260666|ref|ZP_03475862.1| hypothetical protein PRABACTJOHN_01526 [Parabacteroides johnsonii
          DSM 18315]
 gi|218224416|gb|EEC97066.1| hypothetical protein PRABACTJOHN_01526 [Parabacteroides johnsonii
          DSM 18315]
          Length = 57

 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 17 ARKELSSLEQEISYHDDCYYQYSKPII 43
           + ++ +L + +  H+  YY  S P I
Sbjct: 31 VKDKIKALREALEQHNYNYYVLSAPTI 57


>gi|73985821|ref|XP_533831.2| PREDICTED: similar to Laminin beta-2 chain precursor (S-laminin)
            (Laminin B1s chain) [Canis familiaris]
          Length = 1801

 Score = 42.1 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 39/370 (10%), Positives = 69/370 (18%), Gaps = 15/370 (4%)

Query: 239  FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
               G G           +   +             +              +      P +
Sbjct: 932  CPEGPGSQRHFATSCHRDGYSQQIMCHCRAGYTGLRCEACAPGHFGDP-SRPDGQCQPCE 990

Query: 299  IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
             +G +  +D  +   + G+  R   +                    Q             
Sbjct: 991  CNGNIDPMDPDACDPRTGQCLRC-LYHTEGPHCAHCKPGFYGQAARQSCHRCTCNL-LGT 1048

Query: 359  EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
            +P         N    +      L             R         +G           
Sbjct: 1049 DPQQCPSIDRCNCD-PSSGQCPCLPNVQGPTCD----RCAPNFWNLTSGHGCQPCTCHPS 1103

Query: 419  NERHPDAQPFSFPSFCPIC-----QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
              R P    F+    C         S          G    A  C      + Q      
Sbjct: 1104 RARGPTCNEFTGQCHCRAGFGGRTCSECQELHWGDPGLQCRACDCDPHGIDTPQCHRSTG 1163

Query: 474  HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533
            H   R   +     +     F                +  +  Q  +           D+
Sbjct: 1164 HCSCRPGVSGVRCDQ-CARGFSGVFPACHPCHTCFGDWD-RVVQDLAARTRRLEQRVQDL 1221

Query: 534  SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
              T +  +         E+     GI       A S A+   + +   +EI     H   
Sbjct: 1222 QQTGVLGAFESSFWRIQEKLGTVQGIVGARNTSAASTAQLVEATEELRREIGEATEHLTQ 1281

Query: 594  DWLSLIRVPL 603
                L  V  
Sbjct: 1282 LEAELTDVQD 1291


>gi|195169611|ref|XP_002025614.1| GL20799 [Drosophila persimilis]
 gi|194109107|gb|EDW31150.1| GL20799 [Drosophila persimilis]
          Length = 1204

 Score = 42.1 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 28/257 (10%), Positives = 68/257 (26%), Gaps = 11/257 (4%)

Query: 110 FITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRA 169
           +   +    +K    S+ +T     DG  I I YE G  +  ++ G+   G+++      
Sbjct: 105 WYEEMTNDRKKSTVASMSWTS----DGAKICIVYEDGAIIVGSVDGNRIFGKELKGTHLT 160

Query: 170 IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI--AVGRKPYANPRNAASGILRRL 227
                    L +  +      +Y ++ +F    +       G       R A+       
Sbjct: 161 GVQWSPDNRLILFALASGECHLYDNQGNFAMKLNIQCLKLNGSSSARGQRIASICWFSGR 220

Query: 228 NPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE 287
           +     R +    + +GK   +  +   E           + N   + N    +++    
Sbjct: 221 SSNRRNRPVLAICYEIGKVQIMRNENDDEPAIF----DTKMRNVDAKWNHDGTVLAICGT 276

Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347
                       +  V          +  +   S    +S +    + +  +        
Sbjct: 277 TLEQTVPAAQRDNNQVCFYSPLGRIYRTLKVPGSDITSLSWEGKSLRIAMAVDSFIY-FA 335

Query: 348 RTGILTPVARLEPVNIG 364
                      E   + 
Sbjct: 336 NIRPDYIWCYFEKTVVF 352


>gi|193084204|gb|ACF09868.1| ATP-dependent RNA helicase EIF-4A family [uncultured marine group
           II euryarchaeote KM3-136-D10]
          Length = 928

 Score = 42.1 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 10/57 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            + ++G   A+ L  ++ S +   Q           D   L +V  +G   A+AI+E
Sbjct: 878 SLPNIGPTTAKRLLDHFKSIEVLTQA----------DEAELCQVTGIGPTSARAILE 924


>gi|218961967|ref|YP_001741742.1| putative ComEA protein-related protein [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730624|emb|CAO81536.1| putative ComEA protein-related protein [Candidatus Cloacamonas
           acidaminovorans]
          Length = 215

 Score = 42.1 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%)

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
             N  +   L  +  +G++ AQAI+++ +   +   +E ++K         EKN  
Sbjct: 155 NINTANLEELCTLSGIGEVKAQAIIDWREENGSFETIEDIMKVKGIGPKTFEKNKD 210


>gi|148262448|ref|YP_001229154.1| excinuclease ABC subunit C [Geobacter uraniireducens Rf4]
 gi|146395948|gb|ABQ24581.1| Excinuclease ABC subunit C [Geobacter uraniireducens Rf4]
          Length = 636

 Score = 42.1 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 10/66 (15%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           G+  VG +  + L +++ S +                   L +V  +   +A+A+ E + 
Sbjct: 581 GVPGVGTKRRKELLRHFGSLKKLETAT----------LEELQKVEGITRTVAEAVWEHFH 630

Query: 618 NPRNIC 623
              N  
Sbjct: 631 PKGNQE 636


>gi|75213086|sp|Q9SWB4|PARP3_SOYBN RecName: Full=Poly [ADP-ribose] polymerase 3; Short=PARP-3;
           AltName: Full=NAD(+) ADP-ribosyltransferase 3;
           Short=ADPRT-3; AltName: Full=Poly[ADP-ribose] synthase 3
 gi|5802246|gb|AAD51626.1|AF169023_1 seed maturation protein PM38 [Glycine max]
          Length = 815

 Score = 42.1 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGD-----NPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +  + + G  V+  +   T  ++           SKL +A +  + ++ E   +  +++ 
Sbjct: 206 KTTIEKHGGKVANSIIGST-CLVASPAERERGGTSKLAEAMERSIPVVREAWLIDSIEKQ 264

Query: 722 N 722
            
Sbjct: 265 E 265


>gi|83310048|ref|YP_420312.1| transposase [Magnetospirillum magneticum AMB-1]
 gi|82944889|dbj|BAE49753.1| Transposase and inactivated derivative [Magnetospirillum magneticum
           AMB-1]
          Length = 342

 Score = 42.1 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 28/128 (21%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNII---AHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +     E    LA +     +    +++ I     N+ D   +  +P +G +IA AIV  
Sbjct: 174 LPQAAREAMAMLAAHVREIDSKIDALDHEILRWHRNDADSQRVASIPGIGPLIASAIVAA 233

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL----------------VF--TGT 657
             +P+           +     ++          K +                V   TGT
Sbjct: 234 MGDPKRFKTGRDFAAWLGLVPSQNSTG------GKTVLGPITKAGDRYLRSLLVVGATGT 287

Query: 658 LQKIQRHK 665
           L + +R +
Sbjct: 288 LWR-RRKE 294


>gi|198476758|ref|XP_002132437.1| GA25460 [Drosophila pseudoobscura pseudoobscura]
 gi|198137839|gb|EDY69839.1| GA25460 [Drosophila pseudoobscura pseudoobscura]
          Length = 1794

 Score = 42.1 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 41/452 (9%), Positives = 90/452 (19%), Gaps = 24/452 (5%)

Query: 157  GHSGED---VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213
            G  G       AC              I    +     Y  + +           G   +
Sbjct: 833  GTYGFSPEGCKACDCNSIGSKDNNCDLITGQCQCVPNTYGRECN-------QCQPGYWNF 885

Query: 214  ANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
               R                  LN      G + +    G Y        +G        
Sbjct: 886  PECRVCQCNGHAAQCDPLKGTCLNCQDFTTGYSCDSCLDGYYGNPLFGSEIGCRPCRCPE 945

Query: 274  QANTFHGIVSYYNEMKSIRSTLPYDIDGLV-YKVDEFSLQKQLGERARSPRWMISHKFAE 332
               +        +      + L +  +G    + +  +                      
Sbjct: 946  TVASGLAHADGCSLDTRNNNMLCHCQEGYAGARCEICADNHFGSPENGGTCSKCDCSNNI 1005

Query: 333  KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
                T   D +    +  +         +   G         N                 
Sbjct: 1006 DPYDTGNCDRETGSCQKCLYQTTGDHCELCRDGFFGDALQ-QNCQQCDCDFLGTNNTLAH 1064

Query: 393  RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
             D   G    +       P V  +  ++   +    +    C  C    +  +  +    
Sbjct: 1065 CDRHSGQCPCL-------PNVQGLRCDQCAVNHWKIASGEGCEACNCDAIGAVQEQCNPY 1117

Query: 453  VAAHRCTGGLACSAQQLERLKHFVSRD-AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
                +C  G    A       ++ + +         +     F    +    +    +  
Sbjct: 1118 TGQCKCKQGFGGRACNQCEAHYWGNPNERCQACECDQYGAADFQCDRETGHCV--CHEGI 1175

Query: 512  TLQRRQQTSTTKIENILGFGDV-SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
               +  Q +   I             N +D I      S E  I              + 
Sbjct: 1176 GGYKCNQCARGFIGQFPHCSPCGECFNNWDIILTALEDSTEATIQRAKEIKQVGATG-AY 1234

Query: 571  AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
               +       Q I +++ + +     + R+ 
Sbjct: 1235 TAEFSELDKKLQHIRDLLQNTSVSLEDIDRLD 1266


>gi|240103224|ref|YP_002959533.1| Hef nuclease [Thermococcus gammatolerans EJ3]
 gi|239910778|gb|ACS33669.1| Hef, Helicase-associated endonuclease for fork-structured DNA (Hef)
           [Thermococcus gammatolerans EJ3]
          Length = 801

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           G+ +V + +A+ L +++ + +                   L  V  +G+  A+ I 
Sbjct: 744 GLPNVSSTLAKRLLRHFGNVEKVFTATE----------EELKEVEGIGEKKAREIR 789


>gi|206564307|ref|YP_002235070.1| putative transposase [Burkholderia cenocepacia J2315]
 gi|198040347|emb|CAR56332.1| putative transposase [Burkholderia cenocepacia J2315]
          Length = 344

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           + L ++    +   Q  +     +N     L  +P VG I A A+V    + +N      
Sbjct: 188 KLLDQHVRELETQIQTWHR----DNPASRKLAEIPGVGPITASALVASIGDAKNFENGRQ 243

Query: 628 LLKEVSPSIGRHEKNVSSEIENKK 651
           L   +     +H     S +    
Sbjct: 244 LAAWLGLVPRQHSSGGKSTLLGMS 267


>gi|206562856|ref|YP_002233619.1| putative transposase [Burkholderia cenocepacia J2315]
 gi|198038896|emb|CAR54858.1| putative transposase [Burkholderia cenocepacia J2315]
          Length = 344

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           + L ++    +   Q  +     +N     L  +P VG I A A+V    + +N      
Sbjct: 188 KLLDQHVRELETQIQTWHR----DNPASRKLAEIPGVGPITASALVASIGDAKNFENGRQ 243

Query: 628 LLKEVSPSIGRHEKNVSSEIENKK 651
           L   +     +H     S +    
Sbjct: 244 LAAWLGLVPRQHSSGGKSTLLGMS 267


>gi|148560017|ref|YP_001258680.1| excinuclease ABC subunit C [Brucella ovis ATCC 25840]
 gi|148371274|gb|ABQ61253.1| excinuclease ABC, C subunit [Brucella ovis ATCC 25840]
          Length = 690

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  +G    R+L  ++ +            A +    
Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619
             L+++  + + +A+AI + +++ 
Sbjct: 667 EDLVQIDGISEAMARAIHDHFRDK 690


>gi|306842035|ref|ZP_07474708.1| excinuclease ABC, C subunit [Brucella sp. BO2]
 gi|306287876|gb|EFM59296.1| excinuclease ABC, C subunit [Brucella sp. BO2]
          Length = 690

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  +G    R+L  ++ +            A +    
Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619
             L+++  + + +A+AI + +++ 
Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690


>gi|306843659|ref|ZP_07476259.1| excinuclease ABC, C subunit [Brucella sp. BO1]
 gi|306275969|gb|EFM57678.1| excinuclease ABC, C subunit [Brucella sp. BO1]
          Length = 690

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  +G    R+L  ++ +            A +    
Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619
             L+++  + + +A+AI + +++ 
Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690


>gi|294852061|ref|ZP_06792734.1| excinuclease ABC [Brucella sp. NVSL 07-0026]
 gi|294820650|gb|EFG37649.1| excinuclease ABC [Brucella sp. NVSL 07-0026]
          Length = 702

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  +G    R+L  ++ +            A +    
Sbjct: 629 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 678

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619
             L+++  + + +A+AI + +++ 
Sbjct: 679 EDLMQIDGISEAMARAIHDHFRDK 702


>gi|261314539|ref|ZP_05953736.1| excinuclease ABC subunit C [Brucella pinnipedialis M163/99/10]
 gi|261303565|gb|EEY07062.1| excinuclease ABC subunit C [Brucella pinnipedialis M163/99/10]
          Length = 136

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  +G    R+L  ++ +            A +    
Sbjct: 63  HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 112

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619
             L+++  + + +A+AI + +++ 
Sbjct: 113 EDLMQIDGISEAMARAIHDHFRDK 136


>gi|260168450|ref|ZP_05755261.1| excinuclease ABC subunit C [Brucella sp. F5/99]
 gi|261757912|ref|ZP_06001621.1| excinuclease ABC subunit C [Brucella sp. F5/99]
 gi|261737896|gb|EEY25892.1| excinuclease ABC subunit C [Brucella sp. F5/99]
          Length = 690

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  +G    R+L  ++ +            A +    
Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619
             L+++  + + +A+AI + +++ 
Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690


>gi|256254719|ref|ZP_05460255.1| excinuclease ABC subunit C [Brucella ceti B1/94]
 gi|261221899|ref|ZP_05936180.1| UvrABC system protein C [Brucella ceti B1/94]
 gi|260920483|gb|EEX87136.1| UvrABC system protein C [Brucella ceti B1/94]
          Length = 690

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  +G    R+L  ++ +            A +    
Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619
             L+++  + + +A+AI + +++ 
Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690


>gi|256159427|ref|ZP_05457202.1| excinuclease ABC subunit C [Brucella ceti M490/95/1]
 gi|265997862|ref|ZP_06110419.1| UvrABC system protein C [Brucella ceti M490/95/1]
 gi|262552330|gb|EEZ08320.1| UvrABC system protein C [Brucella ceti M490/95/1]
          Length = 555

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  +G    R+L  ++ +            A +    
Sbjct: 482 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 531

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619
             L+++  + + +A+AI + +++ 
Sbjct: 532 EDLMQIDGISEAMARAIHDHFRDK 555


>gi|256060824|ref|ZP_05450984.1| excinuclease ABC subunit C [Brucella neotomae 5K33]
 gi|261324816|ref|ZP_05964013.1| UvrABC system protein C [Brucella neotomae 5K33]
 gi|261300796|gb|EEY04293.1| UvrABC system protein C [Brucella neotomae 5K33]
          Length = 690

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  +G    R+L  ++ +            A +    
Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619
             L+++  + + +A+AI + +++ 
Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690


>gi|256031311|ref|ZP_05444925.1| excinuclease ABC subunit C [Brucella pinnipedialis M292/94/1]
 gi|265988396|ref|ZP_06100953.1| UvrABC system protein C [Brucella pinnipedialis M292/94/1]
 gi|264660593|gb|EEZ30854.1| UvrABC system protein C [Brucella pinnipedialis M292/94/1]
          Length = 690

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  +G    R+L  ++ +            A +    
Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619
             L+++  + + +A+AI + +++ 
Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690


>gi|256369133|ref|YP_003106641.1| excinuclease ABC subunit C [Brucella microti CCM 4915]
 gi|255999293|gb|ACU47692.1| excinuclease ABC subunit C [Brucella microti CCM 4915]
          Length = 611

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  +G    R+L  ++ +            A +    
Sbjct: 538 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 587

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619
             L+++  + + +A+AI + +++ 
Sbjct: 588 EDLMQIDGISEAMARAIHDHFRDK 611


>gi|254718836|ref|ZP_05180647.1| excinuclease ABC subunit C [Brucella sp. 83/13]
 gi|265983820|ref|ZP_06096555.1| UvrABC system protein C [Brucella sp. 83/13]
 gi|306838757|ref|ZP_07471591.1| excinuclease ABC, C subunit [Brucella sp. NF 2653]
 gi|264662412|gb|EEZ32673.1| UvrABC system protein C [Brucella sp. 83/13]
 gi|306406159|gb|EFM62404.1| excinuclease ABC, C subunit [Brucella sp. NF 2653]
          Length = 690

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  +G    R+L  ++ +            A +    
Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619
             L+++  + + +A+AI + +++ 
Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690


>gi|254713824|ref|ZP_05175635.1| excinuclease ABC subunit C [Brucella ceti M644/93/1]
 gi|254717118|ref|ZP_05178929.1| excinuclease ABC subunit C [Brucella ceti M13/05/1]
 gi|261218933|ref|ZP_05933214.1| excinuclease ABC subunit C [Brucella ceti M13/05/1]
 gi|261321568|ref|ZP_05960765.1| UvrABC system protein C [Brucella ceti M644/93/1]
 gi|260924022|gb|EEX90590.1| excinuclease ABC subunit C [Brucella ceti M13/05/1]
 gi|261294258|gb|EEX97754.1| UvrABC system protein C [Brucella ceti M644/93/1]
          Length = 690

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  +G    R+L  ++ +            A +    
Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619
             L+++  + + +A+AI + +++ 
Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690


>gi|254709820|ref|ZP_05171631.1| excinuclease ABC subunit C [Brucella pinnipedialis B2/94]
 gi|261317358|ref|ZP_05956555.1| UvrABC system protein C [Brucella pinnipedialis B2/94]
 gi|261296581|gb|EEY00078.1| UvrABC system protein C [Brucella pinnipedialis B2/94]
          Length = 690

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  +G    R+L  ++ +            A +    
Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619
             L+++  + + +A+AI + +++ 
Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690


>gi|254707070|ref|ZP_05168898.1| excinuclease ABC subunit C [Brucella pinnipedialis M163/99/10]
          Length = 156

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  +G    R+L  ++ +            A +    
Sbjct: 83  HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 132

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619
             L+++  + + +A+AI + +++ 
Sbjct: 133 EDLMQIDGISEAMARAIHDHFRDK 156


>gi|254704029|ref|ZP_05165857.1| excinuclease ABC subunit C [Brucella suis bv. 3 str. 686]
 gi|261754683|ref|ZP_05998392.1| UvrABC system protein C [Brucella suis bv. 3 str. 686]
 gi|261744436|gb|EEY32362.1| UvrABC system protein C [Brucella suis bv. 3 str. 686]
          Length = 690

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  +G    R+L  ++ +            A +    
Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619
             L+++  + + +A+AI + +++ 
Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690


>gi|254701482|ref|ZP_05163310.1| excinuclease ABC subunit C [Brucella suis bv. 5 str. 513]
 gi|261752025|ref|ZP_05995734.1| UvrABC system protein C [Brucella suis bv. 5 str. 513]
 gi|261741778|gb|EEY29704.1| UvrABC system protein C [Brucella suis bv. 5 str. 513]
          Length = 690

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  +G    R+L  ++ +            A +    
Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619
             L+++  + + +A+AI + +++ 
Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690


>gi|225627198|ref|ZP_03785236.1| excinuclease ABC, C subunit [Brucella ceti str. Cudo]
 gi|225618033|gb|EEH15077.1| excinuclease ABC, C subunit [Brucella ceti str. Cudo]
          Length = 702

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  +G    R+L  ++ +            A +    
Sbjct: 629 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 678

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619
             L+++  + + +A+AI + +++ 
Sbjct: 679 EDLMQIDGISEAMARAIHDHFRDK 702


>gi|163842969|ref|YP_001627373.1| excinuclease ABC subunit C [Brucella suis ATCC 23445]
 gi|163673692|gb|ABY37803.1| excinuclease ABC, C subunit [Brucella suis ATCC 23445]
          Length = 690

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  +G    R+L  ++ +            A +    
Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619
             L+++  + + +A+AI + +++ 
Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690


>gi|161486699|ref|NP_697713.2| excinuclease ABC subunit C [Brucella suis 1330]
          Length = 690

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  +G    R+L  ++ +            A +    
Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619
             L+++  + + +A+AI + +++ 
Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690


>gi|161618668|ref|YP_001592555.1| excinuclease ABC subunit C [Brucella canis ATCC 23365]
 gi|260566723|ref|ZP_05837193.1| excinuclease ABC subunit C [Brucella suis bv. 4 str. 40]
 gi|161335479|gb|ABX61784.1| excinuclease ABC, C subunit [Brucella canis ATCC 23365]
 gi|260156241|gb|EEW91321.1| excinuclease ABC subunit C [Brucella suis bv. 4 str. 40]
          Length = 690

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  +G    R+L  ++ +            A +    
Sbjct: 617 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 666

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619
             L+++  + + +A+AI + +++ 
Sbjct: 667 EDLMQIDGISEAMARAIHDHFRDK 690


>gi|38258795|sp|Q8G1L5|UVRC_BRUSU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|23347500|gb|AAN29628.1| excinuclease ABC, C subunit [Brucella suis 1330]
          Length = 611

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  +G    R+L  ++ +            A +    
Sbjct: 538 HRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGT----------AKAVSRAAV 587

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNP 619
             L+++  + + +A+AI + +++ 
Sbjct: 588 EDLMQIDGISEAMARAIHDHFRDK 611


>gi|256113234|ref|ZP_05454102.1| excinuclease ABC subunit C [Brucella melitensis bv. 3 str. Ether]
 gi|265994646|ref|ZP_06107203.1| UvrABC system protein C [Brucella melitensis bv. 3 str. Ether]
 gi|262765759|gb|EEZ11548.1| UvrABC system protein C [Brucella melitensis bv. 3 str. Ether]
          Length = 685

 Score = 42.1 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +G    R+L  ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 635 IAGIGPTRKRALLHHFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 684

Query: 619 P 619
            
Sbjct: 685 K 685


>gi|237815150|ref|ZP_04594148.1| excinuclease ABC, C subunit [Brucella abortus str. 2308 A]
 gi|237789987|gb|EEP64197.1| excinuclease ABC, C subunit [Brucella abortus str. 2308 A]
          Length = 702

 Score = 42.1 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +G    R+L  ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 652 IAGIGPTRKRALLHHFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 701

Query: 619 P 619
            
Sbjct: 702 K 702


>gi|225852219|ref|YP_002732452.1| excinuclease ABC subunit C [Brucella melitensis ATCC 23457]
 gi|256264273|ref|ZP_05466805.1| excinuclease ABC subunit C [Brucella melitensis bv. 2 str. 63/9]
 gi|225640584|gb|ACO00498.1| excinuclease ABC, C subunit [Brucella melitensis ATCC 23457]
 gi|263094533|gb|EEZ18342.1| excinuclease ABC subunit C [Brucella melitensis bv. 2 str. 63/9]
 gi|326408718|gb|ADZ65783.1| excinuclease ABC subunit C [Brucella melitensis M28]
 gi|326538442|gb|ADZ86657.1| excinuclease ABC, C subunit [Brucella melitensis M5-90]
          Length = 685

 Score = 42.1 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +G    R+L  ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 635 IAGIGPTRKRALLHHFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 684

Query: 619 P 619
            
Sbjct: 685 K 685


>gi|161611214|ref|YP_221454.2| excinuclease ABC subunit C [Brucella abortus bv. 1 str. 9-941]
 gi|162002877|ref|YP_414162.2| excinuclease ABC subunit C [Brucella melitensis biovar Abortus
           2308]
 gi|189023910|ref|YP_001934678.1| excinuclease ABC subunit C [Brucella abortus S19]
 gi|254688970|ref|ZP_05152224.1| excinuclease ABC subunit C [Brucella abortus bv. 6 str. 870]
 gi|254693452|ref|ZP_05155280.1| excinuclease ABC subunit C [Brucella abortus bv. 3 str. Tulya]
 gi|254697105|ref|ZP_05158933.1| excinuclease ABC subunit C [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730000|ref|ZP_05188578.1| excinuclease ABC subunit C [Brucella abortus bv. 4 str. 292]
 gi|256257219|ref|ZP_05462755.1| excinuclease ABC subunit C [Brucella abortus bv. 9 str. C68]
 gi|260545588|ref|ZP_05821329.1| excinuclease ABC subunit C [Brucella abortus NCTC 8038]
 gi|260754460|ref|ZP_05866808.1| excinuclease ABC subunit C [Brucella abortus bv. 6 str. 870]
 gi|260757679|ref|ZP_05870027.1| excinuclease ABC subunit C [Brucella abortus bv. 4 str. 292]
 gi|260761506|ref|ZP_05873849.1| excinuclease ABC subunit C [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883489|ref|ZP_05895103.1| UvrABC system protein C [Brucella abortus bv. 9 str. C68]
 gi|261213706|ref|ZP_05927987.1| excinuclease ABC subunit C [Brucella abortus bv. 3 str. Tulya]
 gi|297248068|ref|ZP_06931786.1| excinuclease ABC, C subunit [Brucella abortus bv. 5 str. B3196]
 gi|189019482|gb|ACD72204.1| excinuclease ABC subunit C [Brucella abortus S19]
 gi|260096995|gb|EEW80870.1| excinuclease ABC subunit C [Brucella abortus NCTC 8038]
 gi|260667997|gb|EEX54937.1| excinuclease ABC subunit C [Brucella abortus bv. 4 str. 292]
 gi|260671938|gb|EEX58759.1| excinuclease ABC subunit C [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674568|gb|EEX61389.1| excinuclease ABC subunit C [Brucella abortus bv. 6 str. 870]
 gi|260873017|gb|EEX80086.1| UvrABC system protein C [Brucella abortus bv. 9 str. C68]
 gi|260915313|gb|EEX82174.1| excinuclease ABC subunit C [Brucella abortus bv. 3 str. Tulya]
 gi|297175237|gb|EFH34584.1| excinuclease ABC, C subunit [Brucella abortus bv. 5 str. B3196]
          Length = 690

 Score = 42.1 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +G    R+L  ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 640 IAGIGPTRKRALLHHFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 689

Query: 619 P 619
            
Sbjct: 690 K 690


>gi|17987534|ref|NP_540168.1| excinuclease ABC subunit C [Brucella melitensis bv. 1 str. 16M]
 gi|256044391|ref|ZP_05447295.1| excinuclease ABC subunit C [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563743|ref|ZP_05834229.1| excinuclease ABC subunit C [Brucella melitensis bv. 1 str. 16M]
 gi|265990810|ref|ZP_06103367.1| UvrABC system protein C [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983236|gb|AAL52432.1| excinuclease abc subunit c [Brucella melitensis bv. 1 str. 16M]
 gi|260153759|gb|EEW88851.1| excinuclease ABC subunit C [Brucella melitensis bv. 1 str. 16M]
 gi|263001594|gb|EEZ14169.1| UvrABC system protein C [Brucella melitensis bv. 1 str. Rev.1]
          Length = 685

 Score = 42.1 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +G    R+L  ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 635 IAGIGPTRKRALLHHFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 684

Query: 619 P 619
            
Sbjct: 685 K 685


>gi|75497050|sp|Q57E41|UVRC_BRUAB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|62195793|gb|AAX74093.1| UvrC, excinuclease ABC, C subunit [Brucella abortus bv. 1 str.
           9-941]
          Length = 627

 Score = 42.1 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +G    R+L  ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 577 IAGIGPTRKRALLHHFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 626

Query: 619 P 619
            
Sbjct: 627 K 627


>gi|38258822|sp|Q8YGA9|UVRC_BRUME RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|90111059|sp|Q2YN35|UVRC_BRUA2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|82615689|emb|CAJ10676.1| Excinuclease ABC, C subunit, N-terminal:Helix-hairpin-helix
           motif:Excinuclease ABC, C subunit, C-terminal:UvrB/UvrC
           protein:H [Brucella melitensis biovar Abortus 2308]
          Length = 611

 Score = 42.1 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +G    R+L  ++ +            A +      L+++  + + +A+AI + +++
Sbjct: 561 IAGIGPTRKRALLHHFGT----------AKAVSRAAVEDLMQIDGISEAMARAIHDHFRD 610

Query: 619 P 619
            
Sbjct: 611 K 611


>gi|256425884|ref|YP_003126537.1| DNA protecting protein DprA [Chitinophaga pinensis DSM 2588]
 gi|256040792|gb|ACU64336.1| DNA protecting protein DprA [Chitinophaga pinensis DSM 2588]
          Length = 378

 Score = 42.1 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 21/91 (23%)

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
               L   I    I  +G  +A+ L  ++ S                     L  +P +G
Sbjct: 9   MQEELRHQIALTQIPQIGDIVAKKLLAHFGSASEVLNASRK----------ELGNIPDIG 58

Query: 606 DIIAQAIVEF-----------YQNPRNICAV 625
            + A AI +F           +    NI A+
Sbjct: 59  IVRADAIFQFRDYRKADKEIDFLEKHNIQAI 89


>gi|254168497|ref|ZP_04875341.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
 gi|197622552|gb|EDY35123.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
          Length = 221

 Score = 42.1 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 48/155 (30%), Gaps = 16/155 (10%)

Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA----DIFTLQRRQQTSTT 522
           ++   L H    D  ++   G   +   +      + I I      D      R      
Sbjct: 79  RRRALLIHGYMGDEISLSSFGWNHIMGAYMEIQYRYDIPIFHAEDDDALAEFFRILIKRE 138

Query: 523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582
                 G  +     +             +      + ++G +IA++L +++ S +  A+
Sbjct: 139 TEGKNEGEFERKWMRIPPKRVMSDEE--WKIYALSSLPYIGEKIAKALLEHFGSIEKIAR 196

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                      + + L +V  +G+  A+ I   + 
Sbjct: 197 A----------NIVELKKVEGIGNKKARQIYRIFH 221


>gi|116070556|ref|ZP_01467825.1| excinuclease ABC subunit C [Synechococcus sp. BL107]
 gi|116065961|gb|EAU71718.1| excinuclease ABC subunit C [Synechococcus sp. BL107]
          Length = 661

 Score = 42.1 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 12/76 (15%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +GA+  R L  ++ S                    +L + P VG ++AQ I  F+ 
Sbjct: 590 DIPGLGAKRVRDLLSHFHSIDAIQLA----------SVDTLAKAPGVGPVLAQDIFNFFH 639

Query: 618 --NPRNICAVEALLKE 631
             N  N      L + 
Sbjct: 640 PTNENNDSLPSHLEEH 655


>gi|300853933|ref|YP_003778917.1| putative DNA-binding competence protein [Clostridium ljungdahlii
           DSM 13528]
 gi|300434048|gb|ADK13815.1| predicted DNA-binding competence protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 205

 Score = 41.7 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
           +  +  N      L  +  VGD+ AQ I+++ +   N  ++E L K         EK   
Sbjct: 141 DGRVNINKASKEELKTISGVGDVTAQKIIDYREKNGNFSSIEDLKKVGRIGDKTIEKIKD 200


>gi|149375111|ref|ZP_01892883.1| Holliday junction DNA helicase motor protein [Marinobacter algicola
           DG893]
 gi|149360475|gb|EDM48927.1| Holliday junction DNA helicase motor protein [Marinobacter algicola
           DG893]
          Length = 210

 Score = 41.7 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 24/127 (18%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
                 I      D  +L+++P VG   A+ ++           +  L  +  P+     
Sbjct: 93  LDANQFIRCVEARDANALVKLPGVGKKTAERLL-----IEMTDRIGQLEGQFIPASPNAT 147

Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV---VSAILSRKTDIIIVGDNPGSK 697
               S       V  G      R +A+  +  LG      S  +S+     +  ++  S 
Sbjct: 148 VTSDSANAG---VVAG---HDPREEAEAALIALGYKPQEASKAISK-----VAEESMSS- 195

Query: 698 LEKAQQL 704
               Q+L
Sbjct: 196 ----QEL 198


>gi|312137159|ref|YP_004004496.1| dead/deah box helicase domain protein [Methanothermus fervidus DSM
           2088]
 gi|311224878|gb|ADP77734.1| DEAD/DEAH box helicase domain protein [Methanothermus fervidus DSM
           2088]
          Length = 730

 Score = 41.7 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 10/57 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            + H+GA  A+ L + + S +N                  L++V  +G+ IA+ I E
Sbjct: 676 SLPHIGAVNAKKLLRKFGSVKNVINASEK----------ELMKVEGIGEKIAKDIKE 722


>gi|118361897|ref|XP_001014176.1| hypothetical protein TTHERM_00224460 [Tetrahymena thermophila]
 gi|89295943|gb|EAR93931.1| hypothetical protein TTHERM_00224460 [Tetrahymena thermophila
           SB210]
          Length = 1096

 Score = 41.7 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 36/402 (8%), Positives = 83/402 (20%), Gaps = 25/402 (6%)

Query: 170 IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN- 228
                       P+        Y +  D                +  +N         N 
Sbjct: 526 CQNTAETCLSCQPQQYLFNNSCYNTNPDGAYCQITNGLNYYTCQSCSQNCKVCTGTASNQ 585

Query: 229 PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM 288
                    F+ +    +  +       ++ +   L     NG             Y  +
Sbjct: 586 CQQCFPQAYFYQNSCTLSQPLQTYCDSLLICQTCDLSCKYCNGPSSNECTQCFDGLYLNI 645

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGER---ARSPRWMISHKFAEKQASTR-LLDIDI 344
           K+  ST      G     + FS             +  ++          +TR     + 
Sbjct: 646 KNGISTCQICQKGCSLCSNSFSNCSACQNPYYLNGNSCFLNCLSGKYFDLNTRDCEQCNN 705

Query: 345 QIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVK 404
           Q             +      + I NA+L+N +              G    +  ++ + 
Sbjct: 706 QC-------LTCSDKTNISCTSCIANASLNNNNQCICQKQGYGFSSDGTQ-CISCQLSMC 757

Query: 405 RAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG--- 461
           +  ++       I N         +    C      +                C+     
Sbjct: 758 QTCQLSSICDRCIQNATLSTNSLGNQVCTCNEGYYYIKFYNKCIKCPQNHCQSCSSDGMT 817

Query: 462 ----LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS-----IRIPADIFT 512
               L+    Q     +  +    +      Q      +    +       I  P  I  
Sbjct: 818 CTKCLSGFQLQNGNCSYCNNNKFADSNNQCSQNCTELCQVCSNSNLCSVYDINNPDYIPN 877

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
                         +      +  +   +   ++      +I
Sbjct: 878 QLCHFTCKQCSGLTVKDCLICASDSRQYNYETQQCECKSGYI 919


>gi|78212893|ref|YP_381672.1| excinuclease ABC subunit C [Synechococcus sp. CC9605]
 gi|119367855|sp|Q3AJW5|UVRC_SYNSC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|78197352|gb|ABB35117.1| excinuclease ABC, C subunit [Synechococcus sp. CC9605]
          Length = 661

 Score = 41.7 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  VG +  + L  ++ S                    +L + P VG  +A+ I +F+ 
Sbjct: 589 DIPGVGPKRVKDLLAHFHSIDAIQLA----------SIETLSKAPGVGPALARDIHDFFH 638


>gi|332027308|gb|EGI67392.1| DNA topoisomerase II-binding protein 1 [Acromyrmex echinatior]
          Length = 1276

 Score = 41.7 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 35/76 (46%), Gaps = 13/76 (17%)

Query: 664 HKAQEYVTQL----GAVVS----AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715
            + ++++ Q     G + +    + ++     ++  +   +K EKA ++ + +M  ++++
Sbjct: 125 AEIKDWIQQRVEYMGGIFTKQLRSSVT----HLVADNVMSAKYEKAVEMKIPVMT-KEWI 179

Query: 716 FLLQQYNTTLRIHDDD 731
             + + N    I  DD
Sbjct: 180 EAVWKANLKEVIKADD 195


>gi|300726678|ref|ZP_07060112.1| exonuclease family [Prevotella bryantii B14]
 gi|299776048|gb|EFI72624.1| exonuclease family [Prevotella bryantii B14]
          Length = 480

 Score = 41.7 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK-------IQRHKAQEYVTQLGAVVSAIL 681
           LK           + +S   +KK+V TG   +       I R      +   GA +   +
Sbjct: 372 LKGDLLIKDLKNADPNSPYYDKKVVITGVFYQGADKQNVIDRIDIARQLKACGADIDLKV 431

Query: 682 SRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
           S  TD + VG   G +KL   ++ G+K + ++    L++
Sbjct: 432 SEATDFVFVGKEAGAAKLRNIKKYGIKTLGQKDVETLMK 470


>gi|159038878|ref|YP_001538131.1| excinuclease ABC subunit C [Salinispora arenicola CNS-205]
 gi|189038084|sp|A8LW31|UVRC_SALAI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|157917713|gb|ABV99140.1| excinuclease ABC, C subunit [Salinispora arenicola CNS-205]
          Length = 660

 Score = 41.7 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 10/52 (19%)

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           ++L +++ S +  A                +  VP +G   A+AI+    +P
Sbjct: 611 KALLRHFGSLKRLAAA----------SVEEITEVPGIGKRTAEAILAALADP 652


>gi|328721024|ref|XP_001944818.2| PREDICTED: hypothetical protein LOC100169197 [Acyrthosiphon pisum]
          Length = 626

 Score = 41.7 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 36/99 (36%)

Query: 667 QEYVTQLGAVVSAILSRKTDIII-------------------------VGDNPGSKLE-- 699
           ++ +   G  +   L + TD +I                         V + P SK +  
Sbjct: 48  EKLINSYGGKIIQSLEKSTDYLISDIIQNEGAKRSTSSETNNCKKDIEVKNGPSSKRKNS 107

Query: 700 -----KAQQLGVKIMNEEQF----LFLLQQYNTTLRIHD 729
                KA  L +KI++ ++F      LL+++ T  +  D
Sbjct: 108 VDLINKANILNIKILSAKKFQHWLKSLLKKHRTNKKPTD 146


>gi|322381153|ref|ZP_08055156.1| DisA-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321154729|gb|EFX47000.1| DisA-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 359

 Score = 41.7 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 19/51 (37%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
             N  ++   +          L  V  +G++ A+AI E  +  +    ++ 
Sbjct: 307 IGNLVEQFECLPHVMTATIEELDEVDGIGEVRARAIKEGLRRIQEQVLIDR 357


>gi|330799899|ref|XP_003287978.1| hypothetical protein DICPUDRAFT_55168 [Dictyostelium purpureum]
 gi|325082002|gb|EGC35499.1| hypothetical protein DICPUDRAFT_55168 [Dictyostelium purpureum]
          Length = 730

 Score = 41.7 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716
              + GA V   ++ KT  +I      SK+ KA   G+K+++ +  + 
Sbjct: 472 LAEEFGASVENDITSKTTHVIAQRKGTSKVNKAISKGLKVVSPQWLVE 519


>gi|257052562|ref|YP_003130395.1| Hef nuclease [Halorhabdus utahensis DSM 12940]
 gi|256691325|gb|ACV11662.1| helicase domain protein [Halorhabdus utahensis DSM 12940]
          Length = 833

 Score = 41.7 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 10/70 (14%)

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
            + +  ++      I  VG  IAR+L +++ S Q                   L+ V  V
Sbjct: 766 SKTLPEQQAYVVASIADVGPVIARTLLEHFGSVQAVMTANE----------DDLLDVDGV 815

Query: 605 GDIIAQAIVE 614
           G++ A+ I E
Sbjct: 816 GEVTAERIRE 825


>gi|253698904|ref|YP_003020093.1| PHP domain protein [Geobacter sp. M21]
 gi|251773754|gb|ACT16335.1| PHP domain protein [Geobacter sp. M21]
          Length = 578

 Score = 41.7 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 9/74 (12%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-----VSPS 635
                 +         +L+ +P +G   A+AI +  Q    I ++E L K      +   
Sbjct: 75  MAAYEELKQEVPAGVFALLAIPDLGPKTAKAIYDALQ----IASIEELEKAALEHRLIGI 130

Query: 636 IGRHEKNVSSEIEN 649
            G  +K   + ++ 
Sbjct: 131 KGIKQKTEENILKG 144


>gi|197116665|ref|YP_002137092.1| DNA polymerase IV domain-/PHP phosphoesterase domain-containing
           protein [Geobacter bemidjiensis Bem]
 gi|197086025|gb|ACH37296.1| DNA polymerase IV (family X) domain and PHP phosphoesterase domain
           protein PRK08609 [Geobacter bemidjiensis Bem]
          Length = 578

 Score = 41.7 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 9/74 (12%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-----VSPS 635
                 +         +L+ +P +G   A+AI +  Q    I ++E L K      +   
Sbjct: 75  MAAYEELKQEVPAGVFALLAIPDLGPKTAKAIYDALQ----IASIEELEKAALEHKLIGI 130

Query: 636 IGRHEKNVSSEIEN 649
            G  +K   + ++ 
Sbjct: 131 KGIKQKTEENILKG 144


>gi|281349314|gb|EFB24898.1| hypothetical protein PANDA_009509 [Ailuropoda melanoleuca]
          Length = 256

 Score = 41.7 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/216 (8%), Positives = 37/216 (17%)

Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409
                 A    ++          +H   +   L     V+     +       +      
Sbjct: 17  AHTHMHAHACTLHTCVCTHLYTYMHTYTHCAHLHTRTHVVSHTHTLHACTLAHMHTHARA 76

Query: 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                                   C    + +    +  T   V AH CT     +   +
Sbjct: 77  HSCTHTHARTHTCTRVHTHVHAHTCTHVVAHIHMCAHMCTHMHVRAHTCTHAHIHACIHV 136

Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
               H  +             L    +S   A  +        L       T     +  
Sbjct: 137 CTRAHLHTYTHARTHTCTHAHLHTCTRSCTCAHILAHMCTRTHLHTYTHAHTYLYTYLHT 196

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
                      S            +    +     +
Sbjct: 197 CTHTCTHTHMPSTAAAPRQCTHAHLSIHIVYTCSHQ 232


>gi|149728671|ref|XP_001498255.1| PREDICTED: laminin, beta 2 (laminin S) [Equus caballus]
          Length = 1801

 Score = 41.7 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 39/402 (9%), Positives = 72/402 (17%), Gaps = 16/402 (3%)

Query: 208  VGRKPYANPRNAASGILRRLNPTDITRYLNF-FVHGLGKTSEIFAKGQYEMLQKMRCLGF 266
                   +     +G           +        G G           +   +      
Sbjct: 900  RDHTGGEHCERCIAGFYGDPRLPYGGQCRPCPCPEGPGSRQHFATSCHQDGYSQQIVCHC 959

Query: 267  PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326
                   +              +      P +  G +  +D  +     G+  R      
Sbjct: 960  RAGYTGLRCEACAPGHFGDP-SRPGGRCQPCECSGNIDPMDPDACDPHTGQCLRC-LHHT 1017

Query: 327  SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386
                              Q             +P         N    +      L    
Sbjct: 1018 EGPHCAHCKPGFHGQAARQSCHRCTCNL-LGTDPQQCPSTDRCNCD-PSSGQCPCLPNVQ 1075

Query: 387  KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC-----QSRV 441
                     R         +G             R P    F+    C         S  
Sbjct: 1076 GPSCD----RCAPNFWNLASGHGCQPCACHPSRARGPTCNEFTGQCHCRAGFGGRTCSEC 1131

Query: 442  VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
                    G    A  C      + Q      H   R   +     +     F       
Sbjct: 1132 QELHWGDPGLQCRACDCDPRGIDTPQCHRSTGHCSCRPGMSGVRCDQ-CARGFSGVFPAC 1190

Query: 502  FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
                     +  +  Q  +           ++  T +  +  +      E+     GI  
Sbjct: 1191 HPCHACFGDWD-RVVQDLAARTRRLEQRAQELQQTGVLGAFERSFWHMQEKLGTVQGIVG 1249

Query: 562  VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
                 A S A++  + +   +EI     H       L  V  
Sbjct: 1250 ARNTSAASTAQFLEATEELRREIGEATEHLTQLEAELTDVQD 1291


>gi|74151355|dbj|BAE38800.1| unnamed protein product [Mus musculus]
          Length = 221

 Score = 41.7 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 43/148 (29%), Gaps = 12/148 (8%)

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
            S     I     Q  + +F +      + +   +  +  + + S   I  +        
Sbjct: 83  SSHLQGIIIVEKTQMSEQYFPAVQKFTVLDLGMVLLPVASQSEASCLIIHLVQEQTREPS 142

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            N +    +     L        I  VG   AR L + + S Q            +N   
Sbjct: 143 KNPFLRKKRSMLSELSLVQTVQQIPGVGKVKARLLLQKFPSIQQL----------SNASV 192

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
             L  V  VG   AQ I  F+  P+   
Sbjct: 193 QELEEV--VGPAAAQQIHTFFTQPKRQQ 218


>gi|294496956|ref|YP_003560656.1| DNA integrity scanning protein DisA [Bacillus megaterium QM B1551]
 gi|295702323|ref|YP_003595398.1| DNA integrity scanning protein DisA [Bacillus megaterium DSM 319]
 gi|294346893|gb|ADE67222.1| DNA integrity scanning protein DisA [Bacillus megaterium QM B1551]
 gi|294799982|gb|ADF37048.1| DNA integrity scanning protein DisA [Bacillus megaterium DSM 319]
          Length = 359

 Score = 41.7 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/190 (10%), Positives = 49/190 (25%), Gaps = 19/190 (10%)

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF-FKSEDPAFS 503
              +        +         +    +  ++S        +  Q  +      E+    
Sbjct: 180 EFEEQVTHTDVLQSLHRTEMVLRIKNEILSYISELGTEGRLIRLQMNELLSHLEEEATLL 239

Query: 504 IRIPADIFT------LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
           I+      +      ++R QQ S   + +      +    +Y S          R +  +
Sbjct: 240 IKDYMYDLSFDPYRVIERMQQPSNNVLLDDQTLLRLMGYPMYTSFEDSVIPRGYRMLHKI 299

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                               +N   E+ ++    +     L  V  +G+I A+ I E  +
Sbjct: 300 PRLPSII------------IENLIDELGDLKTIADASVEELDEVEGIGEIRARKIREGLK 347

Query: 618 NPRNICAVEA 627
             +       
Sbjct: 348 RLKEQHLTNR 357


>gi|15896435|ref|NP_349784.1| DNA integrity scanning protein DisA [Clostridium acetobutylicum
           ATCC 824]
 gi|81529413|sp|Q97EC6|DISA_CLOAB RecName: Full=DNA integrity scanning protein disA
 gi|15026257|gb|AAK81124.1|AE007814_2 Predicted nucleic-acid-binding protein protein, containing HHH
           domain, YACK B.subtilis ortholog [Clostridium
           acetobutylicum ATCC 824]
 gi|325510592|gb|ADZ22228.1| nucleic-acid-binding protein protein, containing HHH domain, YACK
           [Clostridium acetobutylicum EA 2018]
          Length = 357

 Score = 41.7 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 7/54 (12%), Positives = 19/54 (35%)

Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
           ++  +N  +    +          L +V  +G+  A+AI    +  +    +  
Sbjct: 302 FIVIENLVKNFKELKKILEASHEDLDKVEGIGEARARAIKSGLRKLKEQTIIRK 355


>gi|296131790|ref|YP_003639037.1| DNA integrity scanning, DisA, linker region [Thermincola sp. JR]
 gi|296030368|gb|ADG81136.1| DNA integrity scanning, DisA, linker region [Thermincola potens JR]
          Length = 359

 Score = 41.7 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +N      ++    N     L  V  +G++ A+AI E  +  R+   ++ 
Sbjct: 306 IENLVNNFKSLQRILNASIEELDDVEGIGEVRARAIKEGLKRYRDQVLLDR 356


>gi|189499391|ref|YP_001958861.1| DNA protecting protein DprA [Chlorobium phaeobacteroides BS1]
 gi|189494832|gb|ACE03380.1| DNA protecting protein DprA [Chlorobium phaeobacteroides BS1]
          Length = 382

 Score = 41.7 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611
             +    +  +G    R+L + + +           +A           +P +G  +A+ 
Sbjct: 15  NLLVLSRVPGLGPARIRALKRQFGTSNAIFHADERALAV----------IPGIGRKLART 64

Query: 612 IVEFYQNPRNICAVEA 627
           I +F+++PRN+     
Sbjct: 65  ITDFFRSPRNLDLARK 80


>gi|288554698|ref|YP_003426633.1| DNA integrity scanning protein DisA [Bacillus pseudofirmus OF4]
 gi|288545858|gb|ADC49741.1| DNA integrity scanning protein DisA [Bacillus pseudofirmus OF4]
          Length = 357

 Score = 41.7 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 10/120 (8%)

Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567
            D F   R    S T+           +    +   + + +S   +     I  +   I 
Sbjct: 246 QDEFDTLRELTKSQTEDLLDEHEIVKVLGYGKNVNVQEQAVSPRGYRILHRIPRLPPAII 305

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +L   Y +  +                  L  V  +G+  A+ I +  Q  +    V+ 
Sbjct: 306 NNLIDKYGNLSSIMFA----------SIEELDEVEGIGEARAKMIKDGLQRIQEQLFVDR 355


>gi|113476857|ref|YP_722918.1| excinuclease ABC subunit C [Trichodesmium erythraeum IMS101]
 gi|119367860|sp|Q10Z79|UVRC_TRIEI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|110167905|gb|ABG52445.1| Excinuclease ABC subunit C [Trichodesmium erythraeum IMS101]
          Length = 622

 Score = 41.7 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 10/92 (10%)

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
            +L            S ++ R     +      I  +G    + L  ++ S         
Sbjct: 541 QLLRRLRDEAHRFAVSFHRDRRSQRMKRSRLDEIPGLGQHRQKLLLGHFHSVDYIRMAT- 599

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                       L  V  VG  +AQ I +++ 
Sbjct: 600 ---------VEQLAEVSGVGPKLAQQIYDYFH 622


>gi|300782145|ref|YP_003762436.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Amycolatopsis
           mediterranei U32]
 gi|299791659|gb|ADJ42034.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Amycolatopsis
           mediterranei U32]
          Length = 241

 Score = 41.7 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 40/93 (43%)

Query: 648 ENKKLVFTGTLQKIQRHK--AQEYVTQLG----------AVVSAI----LSR---KTDII 688
               +V TG      R +  A+E    +G          A   +     +++   K DI+
Sbjct: 28  AGATVVLTG------RDEARAKEAAASVGASGLALDVTDAKAVSSLVRGVAKEHGKLDIV 81

Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           +   N G            IM E+  L ++++ 
Sbjct: 82  VA--NAG------------IM-EDALLGMIKEE 99


>gi|182420014|ref|ZP_02951248.1| DNA integrity scanning protein DisA [Clostridium butyricum 5521]
 gi|237666430|ref|ZP_04526415.1| DNA integrity scanning protein DisA [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182376051|gb|EDT73638.1| DNA integrity scanning protein DisA [Clostridium butyricum 5521]
 gi|237657629|gb|EEP55184.1| DNA integrity scanning protein DisA [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 354

 Score = 41.7 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 50/157 (31%), Gaps = 12/157 (7%)

Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ-RRQQTSTTKIENILGFGDVSVTNLYDS 541
           +  + ++   +  +  +    I +  +       R      +     GF    V      
Sbjct: 196 VMRIVEEINMYILELGNEGRLISMQLNELVRHIERDGILLIQDYCAEGFEHNDVYEHIQR 255

Query: 542 INKRRNISLERFIFSLGIRHVG-------AEIARSLAK--YYLS--YQNFAQEINNIIAH 590
           +N      L+    +LG   +         +  R L+K     S   +N  +E  ++ + 
Sbjct: 256 LNSSELPDLDAIAKTLGYGGIPLMDTLISPKGYRILSKVPRIPSNVIENLIKEFEDLSSI 315

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
              D   L +V  +G+  A AI    +  +    ++ 
Sbjct: 316 IEADIDDLDKVEGIGEARATAIKNGLKRIKEQVLLKK 352


>gi|167583617|ref|YP_001671807.1| NAD-dependent DNA ligase [Enterobacteria phage phiEco32]
 gi|164375455|gb|ABY52863.1| NAD-dependent DNA ligase [Enterobacteria phage phiEco32]
          Length = 109

 Score = 41.7 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64
            +S  +         +++  H   YY    PI  D ++  +      +   +P+
Sbjct: 13 SEISPAEVINRH---RRQLIIHSYLYYWLDDPIWSDDKWQQVANDLVELQALYPE 64


>gi|72382264|ref|YP_291619.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           NATL2A]
 gi|72002114|gb|AAZ57916.1| NAD-dependent DNA ligase N-terminus protein [Prochlorococcus
           marinus str. NATL2A]
          Length = 228

 Score = 41.7 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 71/213 (33%), Gaps = 28/213 (13%)

Query: 116 RFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175
           R W +    +    LEPKI G++I I+Y  G+           + +D++  +R++ TIP+
Sbjct: 43  REWLEIFLPNTRIILEPKIIGSIIGIQYINGELNKVIN----KNSQDITESVRSLKTIPK 98

Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY 235
            L++                       +    +      + R   +  +   N    ++ 
Sbjct: 99  SLAI-------------------KNRLEIQGVLYDYKNLSTRKNETEFIDIQNFISKSKR 139

Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           L F    +          Q     K      P        +     +  + E K      
Sbjct: 140 LKFCAFQI--CQCNINHFQSLQELKHLNFEIPQTQFTNFISDIEIYIQCWREGKLFT--- 194

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
            Y  +GLV K++   LQK LGE   S  W  + 
Sbjct: 195 SYPTNGLVLKINSRKLQKYLGENNLSIPWAYAI 227


>gi|298490257|ref|YP_003720434.1| excinuclease ABC subunit C ['Nostoc azollae' 0708]
 gi|298232175|gb|ADI63311.1| excinuclease ABC, C subunit ['Nostoc azollae' 0708]
          Length = 625

 Score = 41.7 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 10/59 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           I  +G    + L  ++ S     Q  +            L  V  +G  +A+ I +++ 
Sbjct: 575 IPGLGQHRQKLLLAHFRSIDYIRQATS----------QQLEEVQGIGMKLAKDIYDYFH 623


>gi|154284394|ref|XP_001542992.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150406633|gb|EDN02174.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 654

 Score = 41.7 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 653 VFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKI 708
           VF+G L             +    GA++S  +S KT  ++ G N  +K+ +A +   +KI
Sbjct: 456 VFSGVLPLGTDTQNADISLWAKSFGAIISQKISSKTTHLVAGRNRTAKVREATRYPNIKI 515

Query: 709 MNEEQFL------FLLQQYNTTLRIHDDD 731
           +  +  L        L +    + +H +D
Sbjct: 516 VTVQWLLDSITQWKRLDEEPYLVPVHPED 544


>gi|302348720|ref|YP_003816358.1| Putative ski2-type helicase [Acidilobus saccharovorans 345-15]
 gi|302329132|gb|ADL19327.1| Putative ski2-type helicase [Acidilobus saccharovorans 345-15]
          Length = 724

 Score = 41.7 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 11/74 (14%)

Query: 554 IFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           +  + I  VG   AR L    + + ++ A                L+R+P +G     +I
Sbjct: 647 LQLVEIPGVGRVRARRLYNAGFKTLESLATA----------SPQELLRIPGIGPATVASI 696

Query: 613 VEFYQNPRNICAVE 626
           +EF+       +++
Sbjct: 697 LEFFGRKEEAASIK 710


>gi|326203335|ref|ZP_08193200.1| DNA integrity scanning, DisA, linker region [Clostridium
           papyrosolvens DSM 2782]
 gi|325986593|gb|EGD47424.1| DNA integrity scanning, DisA, linker region [Clostridium
           papyrosolvens DSM 2782]
          Length = 361

 Score = 41.7 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +N   E  N+          L +V  +G++ A++I E     +    ++ 
Sbjct: 307 MKNIIGEFQNLQGVVKASIEDLDKVEGIGEVRAKSITEGLSRIKEQTIMDK 357


>gi|55379620|ref|YP_137470.1| excinuclease ABC subunit C [Haloarcula marismortui ATCC 43049]
 gi|73920300|sp|Q5UY89|UVRC_HALMA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|55232345|gb|AAV47764.1| UvrABC system protein C [Haloarcula marismortui ATCC 43049]
          Length = 581

 Score = 41.7 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 10/74 (13%)

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           ++   + +  E       +  +G E  + L + + S  +     +            L  
Sbjct: 515 AVQYHQTLRDEVSTTLDDVPGIGPETRKRLLRRFGSVDSVRAASD----------EELTA 564

Query: 601 VPLVGDIIAQAIVE 614
           +  +G+  A+ I  
Sbjct: 565 IDGIGEQTAETIRT 578


>gi|332523820|ref|ZP_08400072.1| ComE operon protein 1 [Streptococcus porcinus str. Jelinkova 176]
 gi|332315084|gb|EGJ28069.1| ComE operon protein 1 [Streptococcus porcinus str. Jelinkova 176]
          Length = 228

 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
            + +  N  + +++ I  N      L ++P +G+  A+ I++  ++      +E LLK  
Sbjct: 154 NFSTIDN--EIVDSKININVAKLEDLTKIPGIGEKRAKEIIDVRESQGGFKKLEDLLKIS 211

Query: 633 SPSIGRHEKNVS 644
                  EK   
Sbjct: 212 GIGKKTLEKLKD 223


>gi|302889251|ref|XP_003043511.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256724428|gb|EEU37798.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 765

 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 18/94 (19%)

Query: 640 EKNVSSEIENKKLVFTG------TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
           ++  SS +    +V +G       +++    +        GA V   +S++   ++V   
Sbjct: 488 DELKSSVLSGLVIVLSGLVPLGVKVEE---SEIGMQAQSFGAQVLDTVSKRVTHLVV--- 541

Query: 694 PGS-----KLEKAQQL-GVKIMNEEQFLFLLQQY 721
             S     K+++A ++  +KI+N+      L Q+
Sbjct: 542 ASSRPRTKKVQQAAKIPSIKIVNQNWLTDCLSQW 575


>gi|156400174|ref|XP_001638875.1| predicted protein [Nematostella vectensis]
 gi|156225999|gb|EDO46812.1| predicted protein [Nematostella vectensis]
          Length = 968

 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII-----VGDNPGSKL 698
              + N  +   G L++  +      V QLG      ++ K D  I     V      K+
Sbjct: 336 GKPLSNMMVAVIGKLKR-TKADVASCVAQLGGTTMDRVTSKVDCCISTQAEV-SKSSKKM 393

Query: 699 EKAQQLGVKIMNEEQFLFLLQ--QYNTTLRIH 728
           + A++  + +++E +FL  ++  ++N+ +  H
Sbjct: 394 KDAEKFNIPVVSE-EFLDAIKDGEFNSNIAKH 424


>gi|170761011|ref|YP_001788290.1| putative comE operon protein 1 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408000|gb|ACA56411.1| putative comE operon protein 1 [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 202

 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%)

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
           ++  I  N+     L  +P +GD+ AQ I+++ +        E L           EK  
Sbjct: 137 VDGKIDLNSASKEELKSIPGIGDVTAQKILDYREKQGTFKNFEDLKAIGRIGDKTIEKIK 196

Query: 644 S 644
            
Sbjct: 197 E 197


>gi|148380929|ref|YP_001255470.1| putative comE operon protein 1 [Clostridium botulinum A str. ATCC
           3502]
 gi|153930808|ref|YP_001385298.1| putative comE operon protein 1 [Clostridium botulinum A str. ATCC
           19397]
 gi|153934900|ref|YP_001388706.1| putative comE operon protein 1 [Clostridium botulinum A str. Hall]
 gi|170754697|ref|YP_001782611.1| putative comE operon protein 1 [Clostridium botulinum B1 str. Okra]
 gi|148290413|emb|CAL84540.1| putative competence protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152926852|gb|ABS32352.1| putative comE operon protein 1 [Clostridium botulinum A str. ATCC
           19397]
 gi|152930814|gb|ABS36313.1| putative comE operon protein 1 [Clostridium botulinum A str. Hall]
 gi|169119909|gb|ACA43745.1| putative comE operon protein 1 [Clostridium botulinum B1 str. Okra]
          Length = 202

 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%)

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
           ++  I  N+     L  +P +GD+ AQ I+++ +        E L           EK  
Sbjct: 137 VDGKIDLNSASKEELKSIPGIGDVTAQKILDYREKQGTFKNFEDLKAIGRIGDKTIEKIK 196

Query: 644 S 644
            
Sbjct: 197 E 197


>gi|153939089|ref|YP_001392254.1| putative comE operon protein 1 [Clostridium botulinum F str.
           Langeland]
 gi|152934985|gb|ABS40483.1| putative comE operon protein 1 [Clostridium botulinum F str.
           Langeland]
 gi|295320250|gb|ADG00628.1| putative comE operon protein 1 [Clostridium botulinum F str.
           230613]
          Length = 202

 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%)

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
           ++  I  N+     L  +P +GD+ AQ I+++ +        E L           EK  
Sbjct: 137 VDGKIDLNSASKEELKSIPGIGDVTAQKILDYREKQGTFKNFEDLKAIGRIGDKTIEKIK 196

Query: 644 S 644
            
Sbjct: 197 E 197


>gi|308177691|ref|YP_003917097.1| excinuclease ABC subunit C [Arthrobacter arilaitensis Re117]
 gi|307745154|emb|CBT76126.1| excinuclease ABC subunit C [Arthrobacter arilaitensis Re117]
          Length = 647

 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 10/83 (12%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                + ++ +            I  +G     +L K++ S +                 
Sbjct: 560 HRFAITFHRAKRAKSMISSDLDAIPGLGKSKQAALRKHFGSMKKIRAA----------SV 609

Query: 596 LSLIRVPLVGDIIAQAIVEFYQN 618
             L+ VP VG+ +A +I +  ++
Sbjct: 610 EELMDVPGVGEKLATSIKDSLED 632


>gi|206901843|ref|YP_002251194.1| excinuclease ABC, C subunit [Dictyoglomus thermophilum H-6-12]
 gi|226698348|sp|B5YF86|UVRC_DICT6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|206740946|gb|ACI20004.1| excinuclease ABC, C subunit [Dictyoglomus thermophilum H-6-12]
          Length = 599

 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 10/60 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  VG +  + L + + + +N  +               L +VP + + IA+ I  ++ +
Sbjct: 548 IPGVGEKRMKILLEAFSTLENLKKA----------SLEDLKKVPGISEKIAEKIYLYFHD 597


>gi|260437054|ref|ZP_05790870.1| holliday junction DNA helicase RuvA [Butyrivibrio crossotus DSM
           2876]
 gi|292810363|gb|EFF69568.1| holliday junction DNA helicase RuvA [Butyrivibrio crossotus DSM
           2876]
          Length = 198

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 24/121 (19%)

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635
           S  +        +A  +DD   +   P +G   AQ ++        I   + L  E    
Sbjct: 88  SILSVISPDELRLAVISDDVKKIQSAPGIGSKTAQKLI--------IELKDKLKIEDVVY 139

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695
               EK++      K +          R +A   +  LG   S  +S     +++ +N  
Sbjct: 140 DLHDEKDIV-----KSV----------RDEAVSALISLGYSNSESVSA-VSALVITENMT 183

Query: 696 S 696
           S
Sbjct: 184 S 184


>gi|400840|sp|P31669|PARP1_XENLA RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
           AltName: Full=NAD(+) ADP-ribosyltransferase 1;
           Short=ADPRT 1; AltName: Full=Poly[ADP-ribose] synthase 1
 gi|1334661|emb|CAA78126.1| NAD(+) ADP-ribosyltransferase [Xenopus laevis]
          Length = 998

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 32/113 (28%)

Query: 634 PSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI-------LSRKT 685
           P     E       + N K++  G L K  + + +  +  LG  V+         +S   
Sbjct: 360 PKPTVEETFPEGKPLTNTKVLLIGKLSK-NKDEVKTLIEGLGGKVAGSAHKANLCISTN- 417

Query: 686 DIIIVGD--NPGSKLE--KAQQLGVKIMNEEQFLF----------LLQQYNTT 724
                 +      K+E  KA    V++++ + FL           LL Q+  +
Sbjct: 418 -----KEVKKMSKKMEEVKAA--NVRVVS-DDFLKEVESGKSVQELLSQFGIS 462


>gi|116672512|ref|YP_833445.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24]
 gi|116612621|gb|ABK05345.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24]
          Length = 406

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS---KLEKAQQLG 705
             K+V TG + +  R+  +  +   G V    +++   +++   +P S   K +KA+  G
Sbjct: 334 GDKIVLTGEMSR-DRNDIEADLRAAGFVPHPAITKAVRLLVA-ADPDSLSGKAKKARSYG 391

Query: 706 VKIMNEEQFLFLL 718
           + ++ E     LL
Sbjct: 392 IPVVGEPYLTTLL 404


>gi|323340653|ref|ZP_08080905.1| competence protein ComEA [Lactobacillus ruminis ATCC 25644]
 gi|323091776|gb|EFZ34396.1| competence protein ComEA [Lactobacillus ruminis ATCC 25644]
          Length = 250

 Score = 41.3 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 22/62 (35%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
           +  I  N      L+++  +GD  A  I+ + Q   N   ++ L           EK  S
Sbjct: 187 DGKINLNTASKEQLMQLTGIGDKKADEIIAYRQQNGNFKTIDDLKNVSGIGDKTFEKISS 246

Query: 645 SE 646
             
Sbjct: 247 QI 248


>gi|254423285|ref|ZP_05037003.1| excinuclease ABC, C subunit [Synechococcus sp. PCC 7335]
 gi|196190774|gb|EDX85738.1| excinuclease ABC, C subunit [Synechococcus sp. PCC 7335]
          Length = 631

 Score = 41.3 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 10/92 (10%)

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
            +L            S ++++ ++  R      I  +G    + L   + S     +   
Sbjct: 545 MLLRRLRDEAHRFAVSFHRKKRMTRMRRSRLEDIPGLGHNRRKQLLASFRSIDYIREASP 604

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                       L  V  +G  +A+ I E++ 
Sbjct: 605 K----------QLASVDGIGPQLAKQIYEYFH 626


>gi|218438532|ref|YP_002376861.1| excinuclease ABC subunit C [Cyanothece sp. PCC 7424]
 gi|218171260|gb|ACK69993.1| excinuclease ABC, C subunit [Cyanothece sp. PCC 7424]
          Length = 638

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 16/90 (17%)

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
                    +    +   R   L+  I  LG         + L  ++ S     Q     
Sbjct: 563 EAHRFAVSFHRQQRMKNSRRSRLDE-IPGLGFGRQ-----KQLLAHFHSVDYIRQAT--- 613

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                     L+ V  +G+ +AQ I  ++ 
Sbjct: 614 -------IDQLMEVSGIGEQLAQEIYNYFH 636


>gi|159027472|emb|CAO89437.1| uvrC [Microcystis aeruginosa PCC 7806]
          Length = 625

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 16/90 (17%)

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
                    +    + K R   L+  I  LG +       + L  ++ S     +     
Sbjct: 550 EAHRFAVSFHRQQRMQKSRRSRLDE-IPGLGFKRQ-----KDLLAHFHSLDYIREA---- 599

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                     L +V  +G+ +A+ I  ++ 
Sbjct: 600 ------SLEQLQQVTGIGEQLAKEIYNYFH 623


>gi|269218452|ref|ZP_06162306.1| excinuclease ABC subunit C [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211563|gb|EEZ77903.1| excinuclease ABC subunit C [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 734

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +     + ++          L++VP +G  +A+AIVE + +
Sbjct: 692 KALLGSLGSLAKIKAASQEELLKVPGIGPALARAIVEHFAD 732


>gi|260434379|ref|ZP_05788349.1| excinuclease ABC, C subunit [Synechococcus sp. WH 8109]
 gi|260412253|gb|EEX05549.1| excinuclease ABC, C subunit [Synechococcus sp. WH 8109]
          Length = 661

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  VG +  + L  ++ S                    +L + P VG  +A+ I +F+ 
Sbjct: 589 DIPGVGPKRVKDLLAHFHSIDAIQLA----------SVETLSKAPGVGPALARDIHDFFH 638


>gi|255527259|ref|ZP_05394140.1| protein of unknown function DUF147 [Clostridium carboxidivorans P7]
 gi|296187238|ref|ZP_06855634.1| putative DNA integrity scanning protein [Clostridium
           carboxidivorans P7]
 gi|255509044|gb|EET85403.1| protein of unknown function DUF147 [Clostridium carboxidivorans P7]
 gi|296048109|gb|EFG87547.1| putative DNA integrity scanning protein [Clostridium
           carboxidivorans P7]
          Length = 357

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 19/51 (37%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +N  +    +       +  L +V  +G+  A+AI    +  R    ++ 
Sbjct: 302 IENLVKNFKELKGAMEASYEQLDKVEGIGEARARAIKNGLRRLREQIMLDN 352


>gi|168179468|ref|ZP_02614132.1| putative comE operon protein 1 [Clostridium botulinum NCTC 2916]
 gi|168181663|ref|ZP_02616327.1| putative comE operon protein 1 [Clostridium botulinum Bf]
 gi|182669790|gb|EDT81766.1| putative comE operon protein 1 [Clostridium botulinum NCTC 2916]
 gi|182675190|gb|EDT87151.1| putative comE operon protein 1 [Clostridium botulinum Bf]
          Length = 202

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
           +  I  N+     L  +P +GD+ AQ I+++ +        E L           EK   
Sbjct: 138 DGKIDLNSASKEELKSIPGIGDVTAQKILDYREKQGTFKNFEDLKAIGRIGDKTIEKIKE 197


>gi|237796430|ref|YP_002863982.1| putative comE operon protein 1 [Clostridium botulinum Ba4 str. 657]
 gi|229261260|gb|ACQ52293.1| putative comE operon protein 1 [Clostridium botulinum Ba4 str. 657]
          Length = 202

 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
           +  I  N+     L  +P +GD+ AQ I+++ +        E L           EK   
Sbjct: 138 DGKIDLNSASKEELKSIPGIGDVTAQKILDYREKQGTFKNFEDLKAIGRIGDKTIEKIKE 197


>gi|242398676|ref|YP_002994100.1| ATP-dependent RNA helicase, putative [Thermococcus sibiricus MM
           739]
 gi|242265069|gb|ACS89751.1| ATP-dependent RNA helicase, putative [Thermococcus sibiricus MM
           739]
          Length = 772

 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 10/56 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           G+ +V A +AR L K++ + +       +           LI+V  +G+ IA+ I 
Sbjct: 716 GLPNVSAVLARRLLKHFGNVERVFTAKES----------ELIQVEGIGEKIAKEIR 761


>gi|226950402|ref|YP_002805493.1| putative comE operon protein 1 [Clostridium botulinum A2 str.
           Kyoto]
 gi|226844593|gb|ACO87259.1| putative comE operon protein 1 [Clostridium botulinum A2 str.
           Kyoto]
 gi|322807301|emb|CBZ04875.1| late competence protein ComEA, DNA receptor [Clostridium botulinum
           H04402 065]
          Length = 202

 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
           +  I  N+     L  +P +GD+ AQ I+++ +        E L           EK   
Sbjct: 138 DGKIDLNSASKEELKSIPGIGDVTAQKILDYREKQGTFKNFEDLKAIGRIGDKTIEKIKE 197


>gi|166362764|ref|YP_001655037.1| excinuclease ABC subunit C [Microcystis aeruginosa NIES-843]
 gi|189038065|sp|B0JFQ0|UVRC_MICAN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|166085137|dbj|BAF99844.1| excinuclease ABC subunit C [Microcystis aeruginosa NIES-843]
          Length = 625

 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 16/90 (17%)

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
                    +    + K R   L+  I  LG +       + L  ++ S     +     
Sbjct: 550 EAHRFAVSFHRQQRMQKSRRSRLDE-IPGLGFKRQ-----KELLAHFHSLDYIREA---- 599

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                     L +V  +G+ +A+ I  ++ 
Sbjct: 600 ------SLEQLQQVTGIGEQLAKEIYNYFH 623


>gi|218883987|ref|YP_002428369.1| ERCC4 domain protein [Desulfurococcus kamchatkensis 1221n]
 gi|218765603|gb|ACL11002.1| ERCC4 domain protein [Desulfurococcus kamchatkensis 1221n]
          Length = 238

 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
                 +Y    +++ + ++  I  +    +G  +AR L   + + +N A    +     
Sbjct: 152 RTEEKRVYRMRVEKKPMDIQERILYVAESIIGPVLARKLLARFKTLKNLANASKH----- 206

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
                 L+ V  +G+  A+ I   +  P 
Sbjct: 207 -----ELLSVEGIGEKRAEEIYLLFNTPW 230


>gi|282901037|ref|ZP_06308970.1| Excinuclease ABC, C subunit [Cylindrospermopsis raciborskii CS-505]
 gi|281194128|gb|EFA69092.1| Excinuclease ABC, C subunit [Cylindrospermopsis raciborskii CS-505]
          Length = 631

 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 11/92 (11%), Positives = 27/92 (29%), Gaps = 10/92 (10%)

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
            +L              ++++  +  +      I  +G    + L  ++ +     Q   
Sbjct: 549 QLLRRLRDEAHRFAIGFHRQQRSNQWQRSCLDEIPGLGVHRQKLLLAHFRTIDYIRQAT- 607

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                       L   P +G  +AQ I  ++ 
Sbjct: 608 ---------VQQLAEAPGIGLKLAQQIFAYFH 630


>gi|126657460|ref|ZP_01728616.1| excinuclease ABC subunit C [Cyanothece sp. CCY0110]
 gi|126621164|gb|EAZ91877.1| excinuclease ABC subunit C [Cyanothece sp. CCY0110]
          Length = 610

 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 16/90 (17%)

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
                    +    + K R+  LE  I  LG         + L  ++ S     +     
Sbjct: 535 EAHRFAVTFHRQQRLKKSRHSRLED-IPGLGFHRQ-----KQLLAHFHSIDYIREA---- 584

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                     L  V  +G  +A  I +++ 
Sbjct: 585 ------SIEKLQEVSGIGQALATEIYDYFH 608


>gi|332816911|ref|XP_003309859.1| PREDICTED: LOW QUALITY PROTEIN: laminin subunit beta-2-like [Pan
            troglodytes]
          Length = 1792

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 48/494 (9%), Positives = 86/494 (17%), Gaps = 59/494 (11%)

Query: 157  GHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN--------DEMIAV 208
            G  G     C                   E        K     L          +    
Sbjct: 801  GVVGRRCDLCAPGYYGFGPTGCQACQCSHEGALSSLCEKTSGQCLCRTGAFGLRCDRCQR 860

Query: 209  GRKPYANPRNAAS------------GILRRLNPTDITRYLNFF---------VHGLGKTS 247
            G+  + + R                  L   + T                   +G     
Sbjct: 861  GQWGFPSCRPCVCNGHADECNTHTGACLGCRDHTGGEHCERCIAGFHGDPRLPYGGQCRP 920

Query: 248  EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE----------MKSIRSTLPY 297
                +G                +     +   G      E           +        
Sbjct: 921  CPCPEGPGSQRHFATSCHRDEYSQQIVCHCRAGYTGLRCEACAPGHFGDPSRPGGRCQLC 980

Query: 298  DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
            +  G +  +D  +     G+  R                        Q            
Sbjct: 981  ECSGNIDPMDPDACDPHTGQCLRC-LHHTEGPHCAHCKPGFHGQAARQSCHR-------- 1031

Query: 358  LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI---RVGDRVLVKRAGEVIPKVV 414
                N+ G         ++ +          +   +     R         +G       
Sbjct: 1032 -CTCNLLGTNPQQCPSPDQCHCDPSSGQCPCLPNVQGPSCDRCAPNFWNLTSGHGCQPCA 1090

Query: 415  DIIVNERHPDAQPFSFPSFCPIC-----QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                  R P    F+    C         S          G    A  C      + Q  
Sbjct: 1091 CHPSRARGPTCNEFTGQCHCRAGFGGRTCSECQELHWGDPGLQCRACDCDSRGIDTPQCH 1150

Query: 470  ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
                H   R   +     +     F                +  +  Q  +         
Sbjct: 1151 RFTGHCSCRPGVSGVRCDQ-CARGFSGIFPACHPCHACFGDWD-RVVQDLAARTRRLEQR 1208

Query: 530  FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
              ++  T +  +         E+     GI       A S A+   + +   +EI     
Sbjct: 1209 AQELQQTGVLGAFESSFWHMQEKLGIVQGIVGARNTSAASTAQLVEATEELRREIEEATE 1268

Query: 590  HNNDDWLSLIRVPL 603
            H       L  V  
Sbjct: 1269 HLTQLEAELTDVQD 1282


>gi|328760529|gb|EGF74097.1| excinuclease ABC subunit C [Propionibacterium acnes HL099PA1]
          Length = 672

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                + ++ +           G+  +G    ++L  ++ S ++  +             
Sbjct: 576 HRFAITFHRSKRSKAMVESVLDGVSGLGETRRKALVSHFGSVRSLRKAT----------V 625

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
             ++ VP  G  +A  +V      +   A+ 
Sbjct: 626 DDIVEVPGFGPKLAGEVVAALSQDKPAEAIN 656


>gi|327330672|gb|EGE72418.1| excinuclease ABC subunit C [Propionibacterium acnes HL097PA1]
          Length = 672

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                + ++ +           G+  +G    ++L  ++ S ++  +             
Sbjct: 576 HRFAITFHRSKRSKAMVESVLDGVSGLGETRRKALVSHFGSVRSLRKAT----------V 625

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
             ++ VP  G  +A  +V      +   A+ 
Sbjct: 626 DDIVEVPGFGPKLAGEVVAALSQDKPAEAIN 656


>gi|314987670|gb|EFT31761.1| excinuclease ABC subunit C [Propionibacterium acnes HL005PA2]
 gi|314990150|gb|EFT34241.1| excinuclease ABC subunit C [Propionibacterium acnes HL005PA3]
          Length = 672

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                + ++ +           G+  +G    ++L  ++ S ++  +             
Sbjct: 576 HRFAITFHRSKRSKAMVESVLDGVSGLGETRRKALVSHFGSVRSLRKAT----------V 625

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
             ++ VP  G  +A  +V      +   A+ 
Sbjct: 626 DDIVEVPGFGPKLAGEVVAALSQDKPAEAIN 656


>gi|313838516|gb|EFS76230.1| excinuclease ABC subunit C [Propionibacterium acnes HL086PA1]
          Length = 672

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                + ++ +           G+  +G    ++L  ++ S ++  +             
Sbjct: 576 HRFAITFHRSKRSKAMVESVLDGVSGLGETRRKALVSHFGSVRSLRKAT----------V 625

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
             ++ VP  G  +A  +V      +   A+ 
Sbjct: 626 DDIVEVPGFGPKLAGEVVAALSQDKPAEAIN 656


>gi|313802189|gb|EFS43421.1| excinuclease ABC subunit C [Propionibacterium acnes HL110PA2]
          Length = 672

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                + ++ +           G+  +G    ++L  ++ S ++  +             
Sbjct: 576 HRFAITFHRSKRSKAMVESVLDGVSGLGETRRKALVSHFGSVRSLRKAT----------V 625

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
             ++ VP  G  +A  +V      +   A+ 
Sbjct: 626 DDIVEVPGFGPKLAGEVVAALSQDKPAEAIN 656


>gi|289426287|ref|ZP_06428033.1| excinuclease ABC, C subunit [Propionibacterium acnes SK187]
 gi|289153452|gb|EFD02167.1| excinuclease ABC, C subunit [Propionibacterium acnes SK187]
          Length = 672

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                + ++ +           G+  +G    ++L  ++ S ++  +             
Sbjct: 576 HRFAITFHRSKRSKAMVESVLDGVSGLGETRRKALVSHFGSVRSLRKAT----------V 625

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
             ++ VP  G  +A  +V      +   A+ 
Sbjct: 626 DDIVEVPGFGPKLAGEVVAALSQDKPAEAIN 656


>gi|224047277|ref|XP_002194832.1| PREDICTED: poly (ADP-ribose) polymerase family, member 1
           [Taeniopygia guttata]
          Length = 1135

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 13/80 (16%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT-------DIIIVGDNPGS 696
              + N K++  G L K  + + +  V  LG  ++   ++ T       D+    +    
Sbjct: 508 DKPLTNMKILVVGKLSK-NKEEVKSIVEDLGGKMTTTANKATLCISTQKDV----EKMSK 562

Query: 697 KLEKAQQLGVKIMNEEQFLF 716
           K+E+ ++  V++++E  FL 
Sbjct: 563 KMEEVKEAKVRVVSEA-FLQ 581


>gi|289427080|ref|ZP_06428796.1| excinuclease ABC, C subunit [Propionibacterium acnes J165]
 gi|295130383|ref|YP_003581046.1| excinuclease ABC, C subunit [Propionibacterium acnes SK137]
 gi|289159549|gb|EFD07737.1| excinuclease ABC, C subunit [Propionibacterium acnes J165]
 gi|291375448|gb|ADD99302.1| excinuclease ABC, C subunit [Propionibacterium acnes SK137]
 gi|313764678|gb|EFS36042.1| excinuclease ABC subunit C [Propionibacterium acnes HL013PA1]
 gi|313772464|gb|EFS38430.1| excinuclease ABC subunit C [Propionibacterium acnes HL074PA1]
 gi|313791727|gb|EFS39838.1| excinuclease ABC subunit C [Propionibacterium acnes HL110PA1]
 gi|313807298|gb|EFS45785.1| excinuclease ABC subunit C [Propionibacterium acnes HL087PA2]
 gi|313809805|gb|EFS47526.1| excinuclease ABC subunit C [Propionibacterium acnes HL083PA1]
 gi|313815745|gb|EFS53459.1| excinuclease ABC subunit C [Propionibacterium acnes HL059PA1]
 gi|313818344|gb|EFS56058.1| excinuclease ABC subunit C [Propionibacterium acnes HL046PA2]
 gi|313820106|gb|EFS57820.1| excinuclease ABC subunit C [Propionibacterium acnes HL036PA1]
 gi|313823085|gb|EFS60799.1| excinuclease ABC subunit C [Propionibacterium acnes HL036PA2]
 gi|313825639|gb|EFS63353.1| excinuclease ABC subunit C [Propionibacterium acnes HL063PA1]
 gi|313830718|gb|EFS68432.1| excinuclease ABC subunit C [Propionibacterium acnes HL007PA1]
 gi|313833936|gb|EFS71650.1| excinuclease ABC subunit C [Propionibacterium acnes HL056PA1]
 gi|314915173|gb|EFS79004.1| excinuclease ABC subunit C [Propionibacterium acnes HL005PA4]
 gi|314918373|gb|EFS82204.1| excinuclease ABC subunit C [Propionibacterium acnes HL050PA1]
 gi|314919862|gb|EFS83693.1| excinuclease ABC subunit C [Propionibacterium acnes HL050PA3]
 gi|314925334|gb|EFS89165.1| excinuclease ABC subunit C [Propionibacterium acnes HL036PA3]
 gi|314931877|gb|EFS95708.1| excinuclease ABC subunit C [Propionibacterium acnes HL067PA1]
 gi|314956035|gb|EFT00433.1| excinuclease ABC subunit C [Propionibacterium acnes HL027PA1]
 gi|314958429|gb|EFT02532.1| excinuclease ABC subunit C [Propionibacterium acnes HL002PA1]
 gi|314960220|gb|EFT04322.1| excinuclease ABC subunit C [Propionibacterium acnes HL002PA2]
 gi|314963026|gb|EFT07126.1| excinuclease ABC subunit C [Propionibacterium acnes HL082PA1]
 gi|314968143|gb|EFT12242.1| excinuclease ABC subunit C [Propionibacterium acnes HL037PA1]
 gi|314973144|gb|EFT17240.1| excinuclease ABC subunit C [Propionibacterium acnes HL053PA1]
 gi|314976313|gb|EFT20408.1| excinuclease ABC subunit C [Propionibacterium acnes HL045PA1]
 gi|314978206|gb|EFT22300.1| excinuclease ABC subunit C [Propionibacterium acnes HL072PA2]
 gi|314983478|gb|EFT27570.1| excinuclease ABC subunit C [Propionibacterium acnes HL005PA1]
 gi|315077671|gb|EFT49727.1| excinuclease ABC subunit C [Propionibacterium acnes HL053PA2]
 gi|315080275|gb|EFT52251.1| excinuclease ABC subunit C [Propionibacterium acnes HL078PA1]
 gi|315084537|gb|EFT56513.1| excinuclease ABC subunit C [Propionibacterium acnes HL027PA2]
 gi|315085874|gb|EFT57850.1| excinuclease ABC subunit C [Propionibacterium acnes HL002PA3]
 gi|315088709|gb|EFT60685.1| excinuclease ABC subunit C [Propionibacterium acnes HL072PA1]
 gi|315096339|gb|EFT68315.1| excinuclease ABC subunit C [Propionibacterium acnes HL038PA1]
 gi|315098318|gb|EFT70294.1| excinuclease ABC subunit C [Propionibacterium acnes HL059PA2]
 gi|315100987|gb|EFT72963.1| excinuclease ABC subunit C [Propionibacterium acnes HL046PA1]
 gi|315108269|gb|EFT80245.1| excinuclease ABC subunit C [Propionibacterium acnes HL030PA2]
 gi|327325972|gb|EGE67762.1| excinuclease ABC subunit C [Propionibacterium acnes HL096PA2]
 gi|327332157|gb|EGE73894.1| excinuclease ABC subunit C [Propionibacterium acnes HL096PA3]
 gi|327442778|gb|EGE89432.1| excinuclease ABC subunit C [Propionibacterium acnes HL013PA2]
 gi|327446148|gb|EGE92802.1| excinuclease ABC subunit C [Propionibacterium acnes HL043PA2]
 gi|327447873|gb|EGE94527.1| excinuclease ABC subunit C [Propionibacterium acnes HL043PA1]
 gi|327451000|gb|EGE97654.1| excinuclease ABC subunit C [Propionibacterium acnes HL087PA3]
 gi|327452921|gb|EGE99575.1| excinuclease ABC subunit C [Propionibacterium acnes HL092PA1]
 gi|327453651|gb|EGF00306.1| excinuclease ABC subunit C [Propionibacterium acnes HL083PA2]
 gi|328753031|gb|EGF66647.1| excinuclease ABC subunit C [Propionibacterium acnes HL087PA1]
 gi|328753688|gb|EGF67304.1| excinuclease ABC subunit C [Propionibacterium acnes HL020PA1]
 gi|328759223|gb|EGF72839.1| excinuclease ABC subunit C [Propionibacterium acnes HL025PA2]
 gi|332675222|gb|AEE72038.1| UvrABC system protein C [Propionibacterium acnes 266]
          Length = 672

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                + ++ +           G+  +G    ++L  ++ S ++  +             
Sbjct: 576 HRFAITFHRSKRSKAMVESVLDGVSGLGETRRKALVSHFGSVRSLRKAT----------V 625

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
             ++ VP  G  +A  +V      +   A+ 
Sbjct: 626 DDIVEVPGFGPKLAGEVVAALSQDKPAEAIN 656


>gi|119370546|sp|Q6A9J8|UVRC_PROAC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|313813155|gb|EFS50869.1| excinuclease ABC subunit C [Propionibacterium acnes HL025PA1]
 gi|315107006|gb|EFT78982.1| excinuclease ABC subunit C [Propionibacterium acnes HL030PA1]
          Length = 672

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                + ++ +           G+  +G    ++L  ++ S ++  +             
Sbjct: 576 HRFAITFHRSKRSKAMVESVLDGVSGLGETRRKALVSHFGSVRSLRKAT----------V 625

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
             ++ VP  G  +A  +V      +   A+ 
Sbjct: 626 DDIVEVPGFGPKLAGEVVAALSQDKPAEAIN 656


>gi|50842299|ref|YP_055526.1| excinuclease ABC subunit C [Propionibacterium acnes KPA171202]
 gi|50839901|gb|AAT82568.1| excinuclease ABC subunit C [Propionibacterium acnes KPA171202]
          Length = 686

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                + ++ +           G+  +G    ++L  ++ S ++  +             
Sbjct: 590 HRFAITFHRSKRSKAMVESVLDGVSGLGETRRKALVSHFGSVRSLRKAT----------V 639

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
             ++ VP  G  +A  +V      +   A+ 
Sbjct: 640 DDIVEVPGFGPKLAGEVVAALSQDKPAEAIN 670


>gi|332559548|ref|ZP_08413870.1| excinuclease ABC subunit C [Rhodobacter sphaeroides WS8N]
 gi|332277260|gb|EGJ22575.1| excinuclease ABC subunit C [Rhodobacter sphaeroides WS8N]
          Length = 618

 Score = 41.3 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 10/77 (12%)

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
             ++ +            I  VGA   R+L  ++ S +  A+               L  
Sbjct: 550 GAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARA----------GVPDLCA 599

Query: 601 VPLVGDIIAQAIVEFYQ 617
           V  + + +AQ+I +++ 
Sbjct: 600 VEGISETMAQSIHDYFH 616


>gi|326427960|gb|EGD73530.1| hypothetical protein PTSG_12278 [Salpingoeca sp. ATCC 50818]
          Length = 2164

 Score = 41.3 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 7/45 (15%), Positives = 16/45 (35%)

Query: 635  SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
               +  K  +  +    +  TG   +    + ++ V  LG  V +
Sbjct: 1923 PPSKRAKMDTEPLAGFHVALTGDWDEFTDEELKDLVQSLGGTVLS 1967


>gi|221640567|ref|YP_002526829.1| excinuclease ABC subunit C [Rhodobacter sphaeroides KD131]
 gi|221161348|gb|ACM02328.1| UvrABC system protein C [Rhodobacter sphaeroides KD131]
          Length = 607

 Score = 41.3 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 10/77 (12%)

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
             ++ +            I  VGA   R+L  ++ S +  A+               L  
Sbjct: 539 GAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARA----------GVPDLCA 588

Query: 601 VPLVGDIIAQAIVEFYQ 617
           V  + + +AQ+I +++ 
Sbjct: 589 VEGISETMAQSIHDYFH 605


>gi|973304|gb|AAC44002.1| exinuclease ABC subunit C [Rhodobacter sphaeroides]
          Length = 128

 Score = 41.3 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 10/77 (12%)

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
             ++ +            I  VGA   R+L  ++ S +  A+               L  
Sbjct: 60  GAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARA----------GVPDLCA 109

Query: 601 VPLVGDIIAQAIVEFYQ 617
           V  + + +AQ+I +++ 
Sbjct: 110 VEGISETMAQSIHDYFH 126


>gi|77464655|ref|YP_354159.1| excinuclease ABC subunit C [Rhodobacter sphaeroides 2.4.1]
 gi|90111760|sp|Q3IYX6|UVRC_RHOS4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|77389073|gb|ABA80258.1| Excinuclease ABC subunit C [Rhodobacter sphaeroides 2.4.1]
          Length = 623

 Score = 41.3 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 10/77 (12%)

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
             ++ +            I  VGA   R+L  ++ S +  A+               L  
Sbjct: 555 GAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARA----------GVPDLCA 604

Query: 601 VPLVGDIIAQAIVEFYQ 617
           V  + + +AQ+I +++ 
Sbjct: 605 VEGISETMAQSIHDYFH 621


>gi|253996889|ref|YP_003048953.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Methylotenera mobilis JLW8]
 gi|253983568|gb|ACT48426.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Methylotenera mobilis JLW8]
          Length = 210

 Score = 41.3 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 1/76 (1%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPS 635
           +  F+      +  N      L  +  +G + AQAI+++ +   N  +V+ L K     +
Sbjct: 11  FLGFSISALAAVNINTATQAELESLNGIGPVKAQAIIDYRKKNGNFKSVDDLEKVNGVGA 70

Query: 636 IGRHEKNVSSEIENKK 651
                      I  K 
Sbjct: 71  ATLQSVRKDVSISGKS 86


>gi|148643247|ref|YP_001273760.1| Hef nuclease [Methanobrevibacter smithii ATCC 35061]
 gi|222445478|ref|ZP_03607993.1| hypothetical protein METSMIALI_01117 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349960|ref|ZP_05975377.1| putative ATP-dependent RNA helicase [Methanobrevibacter smithii DSM
           2374]
 gi|148552264|gb|ABQ87392.1| ERCC4-like helicase [Methanobrevibacter smithii ATCC 35061]
 gi|222435043|gb|EEE42208.1| hypothetical protein METSMIALI_01117 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860743|gb|EFC93041.1| putative ATP-dependent RNA helicase [Methanobrevibacter smithii DSM
           2374]
          Length = 772

 Score = 41.3 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 18/111 (16%)

Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL-GIRHVGAEIARSLAKYYL 575
           Q T+       +       T +    +K+     E+ +F +  + ++G   A++L +++ 
Sbjct: 665 QDTAAMIKRIAIREQSGEKTPIQIRTDKKPVNLWEQQLFIIESLPNIGPVNAKNLLEHFG 724

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE-------FYQNP 619
           +  N      +           L  V  +G   A  I +       ++QN 
Sbjct: 725 TVANIINASES----------QLQEVEGIGKKTAANIRKVVDSKYLYFQNE 765


>gi|242309633|ref|ZP_04808788.1| competence protein ComEA [Helicobacter pullorum MIT 98-5489]
 gi|239523634|gb|EEQ63500.1| competence protein ComEA [Helicobacter pullorum MIT 98-5489]
          Length = 94

 Score = 41.3 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
            +  N      L+ +  +G+  AQAI+++ +    + +++ L           EK   S 
Sbjct: 31  AVDLNKASKEELMSIKGIGEAKAQAIIDY-REKTPLKSIDDLKNIKGFGPKIIEKIRPSV 89

Query: 647 I 647
           +
Sbjct: 90  V 90


>gi|315641044|ref|ZP_07896127.1| competence protein ComEA [Enterococcus italicus DSM 15952]
 gi|315483213|gb|EFU73726.1| competence protein ComEA [Enterococcus italicus DSM 15952]
          Length = 199

 Score = 41.3 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 24/62 (38%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
            + +  N      L  +  +G+  AQAI+++     N  +++ L +         EK   
Sbjct: 136 ESKVNINTASAEELQTLTGIGEKKAQAIIDYRTQNGNFQSIDQLTEVDGFGEKTVEKLRD 195

Query: 645 SE 646
           S 
Sbjct: 196 SI 197


>gi|158285701|ref|XP_564818.3| AGAP007413-PA [Anopheles gambiae str. PEST]
 gi|157020120|gb|EAL41797.3| AGAP007413-PA [Anopheles gambiae str. PEST]
          Length = 1257

 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723
              +E++  LGA V+  L + T  +I  D   S  +KA+++ + I++   ++   +++N 
Sbjct: 225 DGIKEHIASLGAKVNERLLKDTTHVIFKDGLLSTYQKAKKMNIPIVSIL-WIEACKRHNC 283

Query: 724 TLRIHD 729
            +  +D
Sbjct: 284 LMNPND 289


>gi|77359784|ref|YP_339359.1| competence protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76874695|emb|CAI85916.1| conserved protein of unknown function; putative competence protein
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 99

 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              +  N  D   L ++P +G   AQAI+++ +   N  ++E L       +    K ++
Sbjct: 36  QAALNINTADVSQLSKLPGIGKKKAQAIIDYREAKGNFTSLEDLK-----MVKGIGKKLA 90

Query: 645 SEIENK 650
           +++E K
Sbjct: 91  AKLEGK 96


>gi|126701033|ref|YP_001089930.1| excinuclease ABC subunit C [Clostridium difficile 630]
 gi|255102613|ref|ZP_05331590.1| excinuclease ABC subunit C [Clostridium difficile QCD-63q42]
 gi|255308439|ref|ZP_05352610.1| excinuclease ABC subunit C [Clostridium difficile ATCC 43255]
 gi|119367642|sp|Q180Q8|UVRC_CLOD6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|115252470|emb|CAJ70313.1| Excinuclease ABC subunit C [Clostridium difficile]
          Length = 605

 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I+ +G +  +SL  ++       +               L+ V  +   IA  +  F++
Sbjct: 552 DIQGIGEKRKKSLLNHFKDVDAIKKAT----------MEELLEVDGMNKSIADNVYNFFR 601

Query: 618 NPRN 621
              N
Sbjct: 602 KEEN 605


>gi|299742759|ref|XP_001832754.2| hypothetical protein CC1G_11918 [Coprinopsis cinerea okayama7#130]
 gi|298405334|gb|EAU89078.2| hypothetical protein CC1G_11918 [Coprinopsis cinerea okayama7#130]
          Length = 1706

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 654 FTG---TLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707
           F+G   T+       R   ++ +  +GA  +  +S K  ++I      +K +KA    + 
Sbjct: 517 FSGHEITVTNYTGEAREYLKKLIITMGATFTPSMSGKNTVLIAATKDSTKAQKALSWSIP 576

Query: 708 IMN 710
           ++N
Sbjct: 577 VVN 579


>gi|224541140|ref|ZP_03681679.1| hypothetical protein CATMIT_00292 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525949|gb|EEF95054.1| hypothetical protein CATMIT_00292 [Catenibacterium mitsuokai DSM
           15897]
          Length = 297

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 42/84 (50%), Gaps = 15/84 (17%)

Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---------PGSKLEKA 701
            + FTG L    + + + +V Q G + S  ++ +T  +++G              K++KA
Sbjct: 211 TVAFTGKLAH-TKQEIESFVEQDGMIPSFHVTTQTKYLVIGKKDYQQTRYQKGNKKIKKA 269

Query: 702 QQL-----GVKIMNEEQFLFLLQQ 720
             L      ++I++E+Q++ ++++
Sbjct: 270 ITLSRQGQDIRILHEDQYIDMVRK 293


>gi|330813705|ref|YP_004357944.1| excinuclease ABC subunit C [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486800|gb|AEA81205.1| excinuclease ABC subunit C [Candidatus Pelagibacter sp. IMCC9063]
          Length = 259

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 30/94 (31%), Gaps = 11/94 (11%)

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLG-IRHVGAEIARSLAKYYLSYQNFAQEINNI 587
                   + +     R+       +  L  I  +G    ++L  ++ S +         
Sbjct: 174 MQRLRDEAHRFAIFTHRKKRKKSFLVSPLDEIPGIGRNRKKTLLNHFGSAKTIEGA---- 229

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
                     L +V  + ++IA+ I  ++   +N
Sbjct: 230 ------SLEDLKKVDGISELIAKKIYNYFHLNKN 257


>gi|320528980|ref|ZP_08030072.1| comEA protein [Selenomonas artemidis F0399]
 gi|320138610|gb|EFW30500.1| comEA protein [Selenomonas artemidis F0399]
          Length = 186

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 572 KYYLSYQNF--AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
           + + S        + +  I  N  +   L  +P +G  ++  IVE+ +   N   +E + 
Sbjct: 108 QKFGSKTAVPAGNDTDGRININTANEKELQELPGIGPAMSARIVEYREENGNFKKIEDIK 167

Query: 630 KEVSPSIGRHEKNVS 644
           K       + EK   
Sbjct: 168 KIRGIGNAKFEKLKD 182


>gi|254526395|ref|ZP_05138447.1| excinuclease ABC, C subunit [Prochlorococcus marinus str. MIT 9202]
 gi|221537819|gb|EEE40272.1| excinuclease ABC, C subunit [Prochlorococcus marinus str. MIT 9202]
          Length = 644

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 10/100 (10%)

Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579
              K   +L            S ++ +            I  +G+   + L +++ S   
Sbjct: 555 MNQKGVMLLRRLRDEAHRFALSFHRNKRSKRMNKSQLTQIPGLGSSRIKDLLEHFNSVDA 614

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
                             L++V  +G   A  I  F+ N 
Sbjct: 615 IRIASK----------EDLMKVKGLGANTANDIYNFFNND 644


>gi|126726024|ref|ZP_01741866.1| excinuclease ABC subunit C [Rhodobacterales bacterium HTCC2150]
 gi|126705228|gb|EBA04319.1| excinuclease ABC subunit C [Rhodobacterales bacterium HTCC2150]
          Length = 641

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 10/88 (11%)

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
                       ++ +    +       +  +GA   R+L  +Y S            A 
Sbjct: 562 MRDEAHRFAIGTHRAKRAKSQFKNPLDEVPGIGAARKRALLAHYGS----------AKAV 611

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +      L  V  + D +AQ+I +F+  
Sbjct: 612 SRAGLSDLKAVEGISDSMAQSIYDFFHE 639


>gi|315075308|ref|NP_001186667.1| topoisomerase (DNA) II binding protein 1 [Danio rerio]
          Length = 1526

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK-TDIIIVGDNPGSKLEKAQQLG 705
           ++   +  TG L  ++R + Q    Q GA  +  L       +IV +  G K E A++  
Sbjct: 200 LKGCTVCVTG-LSTVERKEVQRLCDQNGATYTGQLKMNECTHLIVNEPTGQKYEFARKWN 258

Query: 706 V 706
           V
Sbjct: 259 V 259


>gi|300857271|ref|YP_003782255.1| putative DNA-binding protein [Clostridium ljungdahlii DSM 13528]
 gi|300437386|gb|ADK17153.1| putative DNA-binding protein [Clostridium ljungdahlii DSM 13528]
          Length = 354

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 19/51 (37%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +N  +    +       +  L RV  +G+  A+AI    +  R    ++ 
Sbjct: 302 IENLVKNFKELKGVMEASYEQLDRVEGIGEARARAIKNGLRRLREQIMIDN 352


>gi|226308604|ref|YP_002768564.1| oxidoreductase [Rhodococcus erythropolis PR4]
 gi|226187721|dbj|BAH35825.1| putative oxidoreductase [Rhodococcus erythropolis PR4]
          Length = 264

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 29/90 (32%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------- 694
           + +E K +V TG    I R  AQ      GA V          ++   +P          
Sbjct: 2   NRLEGKNVVITGAASGIGRAAAQLMA-AEGAKV----------LVADLDPARAEEAAAAM 50

Query: 695 ----GSKLEKAQQLGVKIMNEEQFLFLLQQ 720
               G+    A   GV +MNEE    ++++
Sbjct: 51  RETGGT----ALGFGVDVMNEESLATMIER 76


>gi|320100599|ref|YP_004176191.1| ERCC4 domain-containing protein [Desulfurococcus mucosus DSM 2162]
 gi|319752951|gb|ADV64709.1| ERCC4 domain protein [Desulfurococcus mucosus DSM 2162]
          Length = 241

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
                 ++    +R+ + +   I  +    +G  +AR L + + + +N A    +     
Sbjct: 152 RTEEKRVFRMRTERKPMDINERILYVAEGVIGPVLARKLLERFKTLRNLANASKH----- 206

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
                 L+ V  +G+  A+ I   +  P 
Sbjct: 207 -----DLLSVEGIGEKRAEEIYLLFNTPW 230


>gi|186684085|ref|YP_001867281.1| excinuclease ABC subunit C [Nostoc punctiforme PCC 73102]
 gi|229558461|sp|B2J6D3|UVRC_NOSP7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|186466537|gb|ACC82338.1| excinuclease ABC, C subunit [Nostoc punctiforme PCC 73102]
          Length = 625

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 10/59 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           I  +G    + L  ++ S     Q               L  VP +G  +AQ I +++ 
Sbjct: 575 IPGLGHHRQKQLLGHFRSVDYIRQATTP----------QLAEVPGIGPRLAQEIYDYFH 623


>gi|148706506|gb|EDL38453.1| cysteine rich transmembrane BMP regulator 1 (chordin like), isoform
           CRA_a [Mus musculus]
          Length = 1152

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 38/436 (8%), Positives = 84/436 (19%), Gaps = 44/436 (10%)

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----------SLNIPEIIEVRGE----- 190
           G       RGDG  G+          T P  +             +      R +     
Sbjct: 481 GSTPRIVSRGDGTPGKCCDVFECVNETKPACVFNSVEYYDGDMFRMDNCRFCRCQGGVSI 540

Query: 191 VYISKNDFLALNDEMIAVGRKPYANP------RNAASGILR----------RLNPTDITR 234
            + ++   L      +  G              N A               R +     +
Sbjct: 541 CFTAQCGELNCERYYVPEGECCPVCEDPIYPLNNPAGCYANGQIRAHGDRWREDDCTFCQ 600

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            +N   H +            ++  +   +                + +   + K     
Sbjct: 601 CINGEPHCVATACGQSCMHPVKVPGECCPVCEEPTYITIDPPACGELSNCSLKEKDCVYG 660

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354
              D +G      +   +  LG +                  T + + ++   R      
Sbjct: 661 FKLDHNGCRTCQCKIREELCLGLKRACTLDC------PFGFLTDVHNCELCQCRPRPKKC 714

Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414
              +         + N    +    K               +      +          +
Sbjct: 715 RPTMCDKFCPLGFLKNKHGCDICRCKKCPELPCSKICPLGFQQDSHGCLICKCRGTCLSM 774

Query: 415 DIIVNERHPDAQPFSFPSFCP-------ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
           D   ++            +C        +    V    NP          CT        
Sbjct: 775 DGHHHKNEESWHDGCRECYCHNGKEMCALITCPVPACGNPTIRSGQCCPSCTDDFVVQKP 834

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527
           +L       +             +D   +    +  +    ++      Q  S T+    
Sbjct: 835 ELSTPSICHAPGGEYFVEGETWNIDSCTQCTCHSGRVLCETEVCPPLLCQNPSRTQDSCC 894

Query: 528 LGFGDVSVTNLYDSIN 543
               D           
Sbjct: 895 PQCTDDPPQPSTSHNE 910


>gi|118618948|ref|YP_907280.1| membrane protein ComEA [Mycobacterium ulcerans Agy99]
 gi|118571058|gb|ABL05809.1| conserved hypothetical membrane protein ComEA [Mycobacterium
           ulcerans Agy99]
          Length = 291

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
           +  ++  N      L  +P VG + A AIV +     N  +V+ L +       R +K
Sbjct: 227 LAEVLDLNTATVEQLDSLPGVGPVTAAAIVSWRAANGNFTSVDQLAEVDGIGPARLQK 284


>gi|313200896|ref|YP_004039554.1| competence protein comea helix-hairpin-helix repeat-containing
           protein [Methylovorus sp. MP688]
 gi|312440212|gb|ADQ84318.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Methylovorus sp. MP688]
          Length = 95

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
           FA   +  +  N      L  V  +G   AQAI+++ +   N   VE L
Sbjct: 10  FALSAHAAVNINTASKEELETVKGIGPAKAQAIIDYRKKNGNFKTVEDL 58


>gi|255537217|ref|XP_002509675.1| conserved hypothetical protein [Ricinus communis]
 gi|223549574|gb|EEF51062.1| conserved hypothetical protein [Ricinus communis]
          Length = 320

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 36  YQYSKPIILDSEYDALKRRCDA 57
           Y    PI+ D E+D LK R   
Sbjct: 146 YVSGNPIMSDEEFDQLKLRLKQ 167


>gi|124025829|ref|YP_001014945.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           NATL1A]
 gi|123960897|gb|ABM75680.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str.
           NATL1A]
          Length = 228

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 71/213 (33%), Gaps = 28/213 (13%)

Query: 116 RFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175
           R W +    +    LEPKI G++I I+Y  G+           + +D++  +R++ TIP+
Sbjct: 43  REWLEIFLPNTRIILEPKIIGSIIGIQYINGELNKVIN----KNSQDITESVRSLKTIPK 98

Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY 235
            L++                       +    +      + R   +  +   N    ++ 
Sbjct: 99  SLAI-------------------KNRLEIQGVLYDNKNLSTRKNETEFIDIQNFISKSKR 139

Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295
           L F    +          Q     K      P        +     +  + E K      
Sbjct: 140 LKFCAFQI--CQCNINHFQSLQELKHLNFEIPQTQFTNFISDIEIYLQCWREGKLFT--- 194

Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
            Y  +GLV K++   LQK LG+   S  W  + 
Sbjct: 195 SYPTNGLVLKINSRKLQKYLGKNNLSIPWAYAI 227


>gi|329725335|gb|EGG61818.1| comEA protein [Staphylococcus epidermidis VCU144]
          Length = 200

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 23/62 (37%)

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
            N  +  N+     L  +P +G   A+ I+ + +      +++ L+K         EK  
Sbjct: 136 TNQPLNLNSATEEQLKNIPGIGPSKAKEILNYREQNHGFNSIDDLMKIKGFGKKTFEKLK 195

Query: 644 SS 645
             
Sbjct: 196 EH 197


>gi|282861580|ref|ZP_06270644.1| protein of unknown function DUF181 [Streptomyces sp. ACTE]
 gi|282563396|gb|EFB68934.1| protein of unknown function DUF181 [Streptomyces sp. ACTE]
          Length = 760

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 29/99 (29%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEY----DALKRRCDAIAHAFPDLARSEDP 71
           + +  +S+L + +  H   Y+Q  +P +  + Y    D             PD  +  DP
Sbjct: 396 ETQARVSALCEAVERHS-GYFQGDEPTLT-AAYRDVADR---------AVHPDAVQLFDP 444

Query: 72  ------------NGPLNKIGGEMNLSLFKVTHSIPTLSL 98
                       +GP +++  E       V H  P  SL
Sbjct: 445 RQYAGRAEWNAAHGPAHRV-CEPFDEEEPV-HWTPMWSL 481


>gi|323360113|ref|YP_004226509.1| nuclease subunit of the excinuclease complex [Microbacterium
           testaceum StLB037]
 gi|323276484|dbj|BAJ76629.1| nuclease subunit of the excinuclease complex [Microbacterium
           testaceum StLB037]
          Length = 647

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 9/85 (10%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592
               + +  +++R+    +       +  +G    ++L +++ S                
Sbjct: 572 RDEAHRFAIVHQRKRRKRDITSVLAEVPGLGDTRIKALLRHFGSVTALKNATP------- 624

Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQ 617
                +  +P +G  +A+AI     
Sbjct: 625 ---DEITALPGIGPALAEAIHTHLA 646


>gi|311741302|ref|ZP_07715126.1| competence protein [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303472|gb|EFQ79551.1| competence protein [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 230

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
           N+     L  +  +G++ AQAIV + +       VE LL+       +  +    
Sbjct: 173 NSATAEELTELKGIGEVTAQAIVAYREEHGGFKDVEELLEVSGIGPAKLAQLKDQ 227


>gi|254977032|ref|ZP_05273504.1| excinuclease ABC subunit C [Clostridium difficile QCD-66c26]
 gi|255094359|ref|ZP_05323837.1| excinuclease ABC subunit C [Clostridium difficile CIP 107932]
 gi|255316112|ref|ZP_05357695.1| excinuclease ABC subunit C [Clostridium difficile QCD-76w55]
 gi|255518773|ref|ZP_05386449.1| excinuclease ABC subunit C [Clostridium difficile QCD-97b34]
 gi|255651951|ref|ZP_05398853.1| excinuclease ABC subunit C [Clostridium difficile QCD-37x79]
 gi|260684915|ref|YP_003216200.1| excinuclease ABC subunit C [Clostridium difficile CD196]
 gi|260688573|ref|YP_003219707.1| excinuclease ABC subunit C [Clostridium difficile R20291]
 gi|260211078|emb|CBA66452.1| excinuclease ABC subunit C [Clostridium difficile CD196]
 gi|260214590|emb|CBE07159.1| excinuclease ABC subunit C [Clostridium difficile R20291]
          Length = 605

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I+ +G +  +SL  ++   +   +               L+ V  +   IA  +  F++
Sbjct: 552 DIQGIGEKRKKSLLNHFKDVEAIKKAT----------MEELLEVDGMNKSIADNVYNFFR 601

Query: 618 NPRN 621
              N
Sbjct: 602 KEEN 605


>gi|332158155|ref|YP_004423434.1| Hef nuclease [Pyrococcus sp. NA2]
 gi|331033618|gb|AEC51430.1| Hef nuclease [Pyrococcus sp. NA2]
          Length = 749

 Score = 40.9 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 10/56 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
            + HV A +A+ L K++ S +                   L++V  +G+ IA+ I 
Sbjct: 693 SLPHVSATLAKRLLKHFGSVEKVFTA----------SVPELMKVEGIGEKIAREIR 738


>gi|312865899|ref|ZP_07726120.1| ComE operon protein 1 [Streptococcus downei F0415]
 gi|311098303|gb|EFQ56526.1| ComE operon protein 1 [Streptococcus downei F0415]
          Length = 125

 Score = 40.9 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
           A      +  N+     L  +  +G+  AQ I+++ Q      +VE L          +E
Sbjct: 58  ASSSQAKVNLNSASKEELQTISGIGEKRAQDIIDYRQEHGGFKSVEELKNISGIGEKTYE 117

Query: 641 K 641
           K
Sbjct: 118 K 118


>gi|310829183|ref|YP_003961540.1| excinuclease ABC subunit C [Eubacterium limosum KIST612]
 gi|308740917|gb|ADO38577.1| excinuclease ABC subunit C [Eubacterium limosum KIST612]
          Length = 632

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 13/156 (8%), Positives = 40/156 (25%), Gaps = 15/156 (9%)

Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531
               +     +++ +      +     +    ++           +       ++     
Sbjct: 477 DVFCIDGGKTHVDAVRSILQMYPNVHIEVCGMVKDDHHRIRGIIYKDEEYPLKKSTPLCT 536

Query: 532 D-----VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
                   V       ++              I  +G +    L ++Y S  N  +    
Sbjct: 537 FLSDISEEVHRYALGYHQTLRKKGMLESRLEEIPGIGKKRRELLMRHYGSLNNLKKTT-- 594

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
                      L  +P + D  AQA+ +++ +  + 
Sbjct: 595 --------LEELKTLPGMSDKTAQAVFDYFNDDEHK 622


>gi|242793677|ref|XP_002482213.1| poly(ADP)-ribose polymerase PARP, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218718801|gb|EED18221.1| poly(ADP)-ribose polymerase PARP, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 666

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 7/70 (10%)

Query: 643 VSSEIENKKLVFTGTL---QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV--GDNPGS- 696
           V +  +   +  +GT      + + K ++ + + G   S  +S     ++    +  GS 
Sbjct: 2   VPTPFKGSVIAVSGTFRTIPPMTQDKLKKIIEEGGGTFSPKVSNDCTHLVTSLKNATGSN 61

Query: 697 -KLEKAQQLG 705
            K ++A  L 
Sbjct: 62  AKFKQASALN 71


>gi|260800470|ref|XP_002595153.1| hypothetical protein BRAFLDRAFT_67948 [Branchiostoma floridae]
 gi|229280395|gb|EEN51164.1| hypothetical protein BRAFLDRAFT_67948 [Branchiostoma floridae]
          Length = 249

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 19/210 (9%), Positives = 47/210 (22%), Gaps = 10/210 (4%)

Query: 333 KQASTRLLDIDIQIGRTGILT-PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
              +TR+  +  Q     +L      +  ++     +T     N         +  +   
Sbjct: 45  HCHNTRIALLQCQNTCMALLHCHNTWMTLLHCQNTWMTLLQCQNTCMALLQCQNTWMTL- 103

Query: 392 GRDIRVGDRVLVKRAGEVIPKV---VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448
              ++  +  +     +                      +     C      ++   N  
Sbjct: 104 ---LQCQNTCMALLHCQNTWMTLLQCQNTWMALIYSQNTWMTLIHCQNTWMTLLHCQNTW 160

Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508
              L   + C   L C    +  L+         +       +            I    
Sbjct: 161 MTLLQCQNTCMALLHCQNTWMTLLQ--GQNTCMALIHCQNTWMTLLQCQNTCMTLIHCQN 218

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
              TL   Q T  T ++    +  +   + 
Sbjct: 219 TWMTLIHCQNTWMTLLQFQDTWMTLLHCHT 248


>gi|282875982|ref|ZP_06284849.1| comEA protein [Staphylococcus epidermidis SK135]
 gi|281295007|gb|EFA87534.1| comEA protein [Staphylococcus epidermidis SK135]
 gi|329737348|gb|EGG73602.1| ComE operon protein 1 [Staphylococcus epidermidis VCU028]
          Length = 200

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 23/62 (37%)

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
            N  +  N+     L  +P +G   A+ I+ + +      +++ L+K         EK  
Sbjct: 136 TNQPLNLNSATEEQLKNIPGIGPSKAKEILNYREQNHGFNSIDDLMKIKGFGKKTFEKLK 195

Query: 644 SS 645
             
Sbjct: 196 EH 197


>gi|297568807|ref|YP_003690151.1| Methylenetetrahydrofolate dehydrogenase (NADP(+)) [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924722|gb|ADH85532.1| Methylenetetrahydrofolate dehydrogenase (NADP(+)) [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 295

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 22/82 (26%)

Query: 663 RHKAQEYVTQLGAV---VSAILSRKTDIIIVGDNPGS------KLEKAQQLGV--KIMN- 710
           R + +  V  L A    V  +++     I+VG++P S      K + A++LG+  + +  
Sbjct: 16  RAELKTEVETLKAKHNVVPGLVT-----ILVGEDPASQSYVAAKNKTAKELGIHSEQITL 70

Query: 711 -----EEQFLFLLQQYNTTLRI 727
                E++ L L+ + N   +I
Sbjct: 71  PADTPEDELLNLVAKCNQDPKI 92


>gi|253998810|ref|YP_003050873.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Methylovorus sp. SIP3-4]
 gi|253985489|gb|ACT50346.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Methylovorus sp. SIP3-4]
          Length = 99

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
           FA   +  +  N      L  V  +G   AQAI+++ +   N   VE L
Sbjct: 14  FALSAHAAVNINTASKEELETVKGIGPAKAQAIIDYRKKNGNFKTVEDL 62


>gi|293366450|ref|ZP_06613127.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319219|gb|EFE59588.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329735316|gb|EGG71608.1| ComE operon protein 1 [Staphylococcus epidermidis VCU045]
          Length = 200

 Score = 40.9 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 23/62 (37%)

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
            N  +  N+     L  +P +G   A+ I+ + +      +++ L+K         EK  
Sbjct: 136 TNQPLNLNSATEEQLKNIPGIGPSKAKEILNYREQNHGFNSIDDLMKIKGFGKKTFEKLK 195

Query: 644 SS 645
             
Sbjct: 196 EH 197


>gi|222084398|ref|YP_002542927.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
 gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
          Length = 1000

 Score = 40.9 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 46/143 (32%), Gaps = 6/143 (4%)

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             IR     F L   +       + I  +   +     D      +  L + +  +   +
Sbjct: 99  GLIRQATRAFNLPCIETDGFEADDIIATYARQAEATGADVTIISSDKDLMQLVTPMVHMY 158

Query: 562 VGAEIARS-LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
              +  +  +      +    +++ ++ A   D   ++  +P +G   A  ++E + +  
Sbjct: 159 DSMKDKQIGIPDVIEKWGVPPEKMIDLQALTGDSVDNVPGIPGIGPKTAAQLLETFGDLD 218

Query: 621 NICAVEALLKEVSPSIGRHEKNV 643
            +     L +       +  +N+
Sbjct: 219 TL-----LARAGEIKQEKRRENI 236


>gi|220917777|ref|YP_002493081.1| excinuclease ABC, C subunit [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254764919|sp|B8JDG6|UVRC_ANAD2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|219955631|gb|ACL66015.1| excinuclease ABC, C subunit [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 707

 Score = 40.9 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 10/62 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +G    R+L +++ + +   +               + +V   G   A A+  F+  
Sbjct: 604 IPGIGEGRKRALLRHFGALRRVREATP----------EEIAQVEGFGPRQAAAVHAFFHR 653

Query: 619 PR 620
           P 
Sbjct: 654 PD 655


>gi|121714012|ref|XP_001274617.1| subunit of DNA polymerase II [Aspergillus clavatus NRRL 1]
 gi|119402770|gb|EAW13191.1| subunit of DNA polymerase II [Aspergillus clavatus NRRL 1]
          Length = 822

 Score = 40.9 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 646 EIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIV----GDNPGSKLEK 700
                 +  TG  + +  R+  Q+     GA     L++    +I     G+    K + 
Sbjct: 128 TFMGLSICITG-FEDMAYRNYIQDTAASNGADFRKDLTKNVSHLIAWNTEGE----KYKF 182

Query: 701 AQQLGVKIMNEEQFLFLLQQ 720
           A Q  +K++  + F   +++
Sbjct: 183 ATQWNIKVVTLKWFTDSIER 202


>gi|114569323|ref|YP_756003.1| excinuclease ABC subunit C [Maricaulis maris MCS10]
 gi|119367665|sp|Q0ARM2|UVRC_MARMM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|114339785|gb|ABI65065.1| excinuclease ABC, C subunit [Maricaulis maris MCS10]
          Length = 633

 Score = 40.9 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 10/75 (13%)

Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602
           ++ +           GI  +G    ++L  ++ S            A  N     L  V 
Sbjct: 568 HRAKRKKQMTDNPLDGIDGIGPSRKKALLAHFGS----------AKAVRNAALADLEAVD 617

Query: 603 LVGDIIAQAIVEFYQ 617
            +   +A+ I +++Q
Sbjct: 618 GISRAMARKIHDWFQ 632


>gi|86157705|ref|YP_464490.1| excinuclease ABC subunit C [Anaeromyxobacter dehalogenans 2CP-C]
 gi|119367624|sp|Q2IQH0|UVRC_ANADE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|85774216|gb|ABC81053.1| Excinuclease ABC subunit C [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 707

 Score = 40.9 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 10/62 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +G    R+L +++ + +   +               + +V   G   A A+  F+  
Sbjct: 604 IPGIGEGRKRALLRHFGALRRVREATP----------EEIAQVEGFGPRQAAAVHAFFHR 653

Query: 619 PR 620
           P 
Sbjct: 654 PD 655


>gi|91790880|ref|YP_551831.1| ERCC4 [Polaromonas sp. JS666]
 gi|91700760|gb|ABE46933.1| ERCC4 [Polaromonas sp. JS666]
          Length = 217

 Score = 40.9 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 10/57 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           G+   G   A+ L  ++ S +                   L  V  +G   A  I E
Sbjct: 162 GLPGCGPGTAKKLLGHFGSAERVFAA----------SVDELCAVKGIGRKTADQIRE 208


>gi|315656605|ref|ZP_07909492.1| excinuclease ABC subunit C [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492560|gb|EFU82164.1| excinuclease ABC subunit C [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 693

 Score = 40.9 bits (94), Expect = 0.87,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 10/54 (18%)

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           ++L +++ S +   +               +  VP  G   A+ +V F  N  N
Sbjct: 646 KALLRHFGSVKRLREASAA----------EIAEVPGFGLKSAENLVAFLNNSGN 689


>gi|302875860|ref|YP_003844493.1| helicase, RecD/TraA family [Clostridium cellulovorans 743B]
 gi|307689293|ref|ZP_07631739.1| helicase, RecD/TraA family protein [Clostridium cellulovorans 743B]
 gi|302578717|gb|ADL52729.1| helicase, RecD/TraA family [Clostridium cellulovorans 743B]
          Length = 737

 Score = 40.9 bits (94), Expect = 0.87,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 43/124 (34%), Gaps = 14/124 (11%)

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561
             I    +  TL   +           G          + +     I +ER++ S  ++ 
Sbjct: 36  GVIPYIVEGQTL---KLKGQWINHKKFGQQFKVEE--CEEVLPDSVIGIERYLSSGVVQG 90

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           +G   AR + +++ +         + +    +D   L  +  +G    + I E +   R+
Sbjct: 91  IGPVTARKIVQHFGN---------DALRIMEEDIERLKEIEGIGAKKIKVIAESFATQRD 141

Query: 622 ICAV 625
           I A+
Sbjct: 142 IRAI 145


>gi|298346942|ref|YP_003719629.1| excision endonuclease subunit UvrC [Mobiluncus curtisii ATCC 43063]
 gi|298237003|gb|ADI68135.1| excision endonuclease subunit UvrC [Mobiluncus curtisii ATCC 43063]
          Length = 693

 Score = 40.9 bits (94), Expect = 0.87,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 10/54 (18%)

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           ++L +++ S +   +               +  VP  G   A+ +V F  N  N
Sbjct: 646 KALLRHFGSVKRLREASAA----------EIAEVPGFGLKSAENLVAFLNNSGN 689


>gi|227549218|ref|ZP_03979267.1| excinuclease ABC subunit C [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078672|gb|EEI16635.1| excinuclease ABC subunit C [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 689

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 15/111 (13%), Positives = 33/111 (29%), Gaps = 13/111 (11%)

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
           P D   +   + +    +   +          Y    + + +         G+  +G   
Sbjct: 590 PDDDEPVILPRNSEGMYLLQQIRDEAHRFAITYHRQQRSKRMRASA---LDGVPGLGPAR 646

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
              L KY+ S +   +               + +V  VG  +A++I E   
Sbjct: 647 RTDLVKYFGSVKKITEATK----------EEIQQVKGVGPKLAESIYEHLH 687


>gi|73960821|ref|XP_863797.1| PREDICTED: similar to Poly [ADP-ribose] polymerase-1 (PARP-1)
           (ADPRT) (NAD(+) ADP-ribosyltransferase-1)
           (Poly[ADP-ribose] synthetase-1) isoform 3 [Canis
           familiaris]
          Length = 981

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 5/42 (11%)

Query: 644 SSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAILSR 683
              + N K++   TL K+ R   + +  + +LG  ++   ++
Sbjct: 354 GKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANK 392


>gi|327263319|ref|XP_003216467.1| PREDICTED: multiple epidermal growth factor-like domains protein
           10-like [Anolis carolinensis]
          Length = 1139

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 26/340 (7%), Positives = 49/340 (14%), Gaps = 15/340 (4%)

Query: 163 VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASG 222
            S        I        P             N +                NP   A  
Sbjct: 118 CSDKCIHGRCIAPNTCQCEPGWGGPNCSSACDSNHWGPHCSSRCQCKNGALCNPITGACH 177

Query: 223 ILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282
                       + +   +G     +   +              P               
Sbjct: 178 CAAGFKGWRCEEHCDQGTYGNDCHQKCQCQNGATCDHVTGECRCPPGYTGAFCEDLCPPG 237

Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER-----ARSPRWMI---SHKFAEKQ 334
            +  + +          +G V            G          P         +  +  
Sbjct: 238 KHGPQCEERCPC----QNGGVCHHVTGECACPPGWMGTVCGQPCPEGRYGKNCSQECQCH 293

Query: 335 ASTRLLDID--IQIGRTGILTPVARLEPVNIGGALI-TNATLHNEDYIKGLDASGKVMRG 391
              +          G             V   G          N      +  +     G
Sbjct: 294 NGGKCDSATGQCNCGPGYTGERCQDECAVGTFGVQCAETCQCRNGGKCYHISGACLCEPG 353

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
                   R+  +    +                 P S    C    S +  +     G 
Sbjct: 354 YTGEHCETRLCTEGIYGIKCDKKCPCHLPNTHSCHPMSGECSCESGWSGLYCNETCSPGF 413

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
              + +        A         +    F          
Sbjct: 414 YGESCQQICTCQNGADCDSVSGKCICAPGFKGSDCSIPCP 453


>gi|168178803|ref|ZP_02613467.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|226950961|ref|YP_002806052.1| DNA integrity scanning protein DisA [Clostridium botulinum A2 str.
           Kyoto]
 gi|254777853|sp|C1FNB1|DISA_CLOBJ RecName: Full=DNA integrity scanning protein disA
 gi|182670150|gb|EDT82126.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|226841239|gb|ACO83905.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
          Length = 353

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 18/51 (35%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +N     N +       +  L  V  +G+  A+AI    +  R    ++ 
Sbjct: 302 IENLVANFNQLKCVMEASYEQLDNVEGIGEARAKAIKNGLRRLREQIMLDK 352


>gi|73960819|ref|XP_863776.1| PREDICTED: similar to Poly [ADP-ribose] polymerase-1 (PARP-1)
           (ADPRT) (NAD(+) ADP-ribosyltransferase-1)
           (Poly[ADP-ribose] synthetase-1) isoform 2 [Canis
           familiaris]
          Length = 976

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 5/42 (11%)

Query: 644 SSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAILSR 683
              + N K++   TL K+ R   + +  + +LG  ++   ++
Sbjct: 343 GKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANK 381


>gi|73960817|ref|XP_547506.2| PREDICTED: similar to Poly [ADP-ribose] polymerase-1 (PARP-1)
           (ADPRT) (NAD(+) ADP-ribosyltransferase-1)
           (Poly[ADP-ribose] synthetase-1) isoform 1 [Canis
           familiaris]
          Length = 972

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 5/42 (11%)

Query: 644 SSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAILSR 683
              + N K++   TL K+ R   + +  + +LG  ++   ++
Sbjct: 345 GKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANK 383


>gi|73960823|ref|XP_863821.1| PREDICTED: similar to Poly [ADP-ribose] polymerase-1 (PARP-1)
           (ADPRT) (NAD(+) ADP-ribosyltransferase-1)
           (Poly[ADP-ribose] synthetase-1) isoform 4 [Canis
           familiaris]
          Length = 973

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 5/42 (11%)

Query: 644 SSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAVVSAILSR 683
              + N K++   TL K+ R   + +  + +LG  ++   ++
Sbjct: 346 GKPLSNMKIL---TLGKLSRNKDEVKAMIEKLGGKLTGTANK 384


>gi|189218734|ref|YP_001939375.1| excinuclease ABC subunit C [Methylacidiphilum infernorum V4]
 gi|189185592|gb|ACD82777.1| Excinuclease ABC subunit C [Methylacidiphilum infernorum V4]
          Length = 486

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
               +     + L + + S +   +               +  V  +G  +A+ I+ F  
Sbjct: 434 DCPGISENRKKLLIRAFGSIEKIKKS----------SVEEIAAVKGIGKKLAEQILSFLS 483


>gi|187776549|ref|ZP_02993022.1| hypothetical protein CLOSPO_00061 [Clostridium sporogenes ATCC
           15579]
 gi|187775208|gb|EDU39010.1| hypothetical protein CLOSPO_00061 [Clostridium sporogenes ATCC
           15579]
          Length = 356

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 18/51 (35%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +N     N +       +  L  V  +G+  A+AI    +  R    ++ 
Sbjct: 305 IENLVANFNQLKCVMEASYEQLDNVEGIGEARAKAIKNGLRRLREQIMLDK 355


>gi|296417739|ref|XP_002838510.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634449|emb|CAZ82701.1| unnamed protein product [Tuber melanosporum]
          Length = 755

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 14/81 (17%)

Query: 650 KKLVFT--GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-----DNPG--S---K 697
           K +VF+  G L  + R   +E V   G  V   L+ + D  +VG     DNP   S   K
Sbjct: 631 KNVVFSFRGILPTLTRGDMRELVHIYGGFVEENLTSRIDYTVVGSRNPLDNPQVWSREMK 690

Query: 698 LEKAQQLGVKIMNEEQFLFLL 718
           +   +QLG++ ++E+ F  LL
Sbjct: 691 II--EQLGIRKIDEDGFAELL 709


>gi|217076174|ref|YP_002333890.1| hypothetical protein THA_41 [Thermosipho africanus TCF52B]
 gi|217036027|gb|ACJ74549.1| hypothetical protein THA_41 [Thermosipho africanus TCF52B]
          Length = 191

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%)

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
            II  N  D   L+ +P +G + A+AI+ + Q   N  +++ L+          EK
Sbjct: 52  QIIDLNKADLEQLMSLPGIGTVKAKAIISYRQAHGNFNSIDDLINVTGIGPSTLEK 107


>gi|168181835|ref|ZP_02616499.1| putative DNA-binding protein [Clostridium botulinum Bf]
 gi|237796970|ref|YP_002864522.1| DNA integrity scanning protein DisA [Clostridium botulinum Ba4 str.
           657]
 gi|259645240|sp|C3KVS9|DISA_CLOB6 RecName: Full=DNA integrity scanning protein disA
 gi|182674824|gb|EDT86785.1| putative DNA-binding protein [Clostridium botulinum Bf]
 gi|229261401|gb|ACQ52434.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 353

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 18/51 (35%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +N     N +       +  L  V  +G+  A+AI    +  R    ++ 
Sbjct: 302 IENLVANFNQLKCVMEASYEQLDNVEGIGEARAKAIKNGLRRLREQIMLDK 352


>gi|148381449|ref|YP_001255990.1| DNA integrity scanning protein DisA [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933678|ref|YP_001385824.1| DNA integrity scanning protein DisA [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935579|ref|YP_001389231.1| DNA integrity scanning protein DisA [Clostridium botulinum A str.
           Hall]
 gi|153940121|ref|YP_001392862.1| DNA integrity scanning protein DisA [Clostridium botulinum F str.
           Langeland]
 gi|170755550|ref|YP_001783149.1| DNA integrity scanning protein DisA [Clostridium botulinum B1 str.
           Okra]
 gi|189083126|sp|A7GJA2|DISA_CLOBL RecName: Full=DNA integrity scanning protein disA
 gi|226729436|sp|A7FZ95|DISA_CLOB1 RecName: Full=DNA integrity scanning protein disA
 gi|226729439|sp|A5I7N4|DISA_CLOBH RecName: Full=DNA integrity scanning protein disA
 gi|226729440|sp|B1IGI2|DISA_CLOBK RecName: Full=DNA integrity scanning protein disA
 gi|148290933|emb|CAL85069.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152929722|gb|ABS35222.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152931493|gb|ABS36992.1| putative DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|152936017|gb|ABS41515.1| putative DNA-binding protein [Clostridium botulinum F str.
           Langeland]
 gi|169120762|gb|ACA44598.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|295320840|gb|ADG01218.1| putative DNA-binding protein [Clostridium botulinum F str. 230613]
 gi|322807835|emb|CBZ05410.1| DNA integrity scanning protein disA [Clostridium botulinum H04402
           065]
          Length = 353

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 18/51 (35%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +N     N +       +  L  V  +G+  A+AI    +  R    ++ 
Sbjct: 302 IENLVANFNQLKCVMEASYEQLDNVEGIGEARAKAIKNGLRRLREQIMLDK 352


>gi|120601910|ref|YP_966310.1| hypothetical protein Dvul_0862 [Desulfovibrio vulgaris DP4]
 gi|120562139|gb|ABM27883.1| hypothetical protein Dvul_0862 [Desulfovibrio vulgaris DP4]
          Length = 240

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-----DNPGSKLEKAQQL-- 704
              TG  +  +R   ++ +   G      +S +  +++VG     D+  SKL KA     
Sbjct: 153 FCLTGKFRAGKREYCKQIIKSFGGTYRNCISGEECVLVVGSLGWNDSFSSKLHKAIAWRA 212

Query: 705 G---VKIMNEEQFLFLLQQY 721
           G   + I++EE +  +  ++
Sbjct: 213 GNARISIVSEEHWWKVFGKH 232


>gi|84488838|ref|YP_447070.1| Hef nuclease [Methanosphaera stadtmanae DSM 3091]
 gi|84372157|gb|ABC56427.1| predicted ERCC4-like helicase [Methanosphaera stadtmanae DSM 3091]
          Length = 752

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 10/57 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +  +G   A++L +++ + +N      N           L  V  +G+  A  I++
Sbjct: 698 SLPGIGPVSAKNLLRHFKNVKNIVNASKN----------ELKDVEGIGEKTATNIID 744


>gi|170759473|ref|YP_001788849.1| DNA integrity scanning protein DisA [Clostridium botulinum A3 str.
           Loch Maree]
 gi|226729441|sp|B1KTB1|DISA_CLOBM RecName: Full=DNA integrity scanning protein disA
 gi|169406462|gb|ACA54873.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 353

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 18/51 (35%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +N     N +       +  L  V  +G+  A+AI    +  R    ++ 
Sbjct: 302 IENLVANFNQLKCVMEASYEQLDNVEGIGEARAKAIKNGLRRLREQIMLDK 352


>gi|14520497|ref|NP_125972.1| Hef nuclease [Pyrococcus abyssi GE5]
 gi|5457712|emb|CAB49203.1| Putative ATP-dependent ERCC4-like helicase [Pyrococcus abyssi GE5]
          Length = 752

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 10/56 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
            + HV A +A+ L K++ S +                   L++V  +G+ IA+ I 
Sbjct: 697 SLPHVSATLAKRLLKHFGSVERVFTA----------SVPELMKVEGIGEKIAREIR 742


>gi|291566548|dbj|BAI88820.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 437

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 24/397 (6%), Positives = 65/397 (16%), Gaps = 22/397 (5%)

Query: 164 SACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGI 223
               R + +        +          +   +     +  MI      +      +S  
Sbjct: 17  FVLSRCVTSSHWWFDQVMIRCDAPYFFGWCVTSSHWWFDQVMIQCDAPYFFGWCVTSSHW 76

Query: 224 LRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVS 283
                         F       +S  +              G+ V +     +       
Sbjct: 77  WFDQVMIQCDTPYFFGW--CVTSSHWWFDQVMIQCDAPYFFGWCVTSSHWWFDQVMIQCD 134

Query: 284 YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDID 343
                    ++  +  D ++ + D           +      +  +              
Sbjct: 135 APYFFGWCVTSSHWWFDQVMIQCDAPYFFGWCVTSSHWWFDQVMIQCDAPYFFGWC---- 190

Query: 344 IQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLV 403
           +          + + +     G     ++    D +     +                 V
Sbjct: 191 VTSSHWWFDQVMIQCDAPYFFG-WCVTSSHWWFDQVMIQCDAPYFFGWCVTSSHWWFDQV 249

Query: 404 KRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463
               +        + +              C           +          +C     
Sbjct: 250 MIQCDAPYFFGWCVTS---SHWWFDQVMIQCDAPYFFGWCVTSSHWWFDQVMFQCDAPY- 305

Query: 464 CSAQQLERLKHFVSRDAF------NIEGLG----KQQLDFFFKSEDPAFSIRIPADIFTL 513
                     H+               G          D      D  +           
Sbjct: 306 -FFGWCVTSSHWWFDQVMIQCDAPYFFGWCVTSSHWWFDQVMIQCDAPYFFGWCVTSSHW 364

Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550
              Q           G+   S    +D +  R +   
Sbjct: 365 WFDQVMIQCDAPYFFGWCVTSSHWWFDQVMIRCDAPY 401


>gi|159479234|ref|XP_001697698.1| hypothetical protein CHLREDRAFT_150878 [Chlamydomonas reinhardtii]
 gi|158274066|gb|EDO99850.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 1001

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 651 KLVFTGT-LQKIQRHKAQEYVTQLGAVVSAI-LSRKTDIIIVGD--N--PGSKLEKAQQL 704
           K+V TG+     +R   + +  +LGA  S   + RKT  ++  D       +K  KA + 
Sbjct: 20  KVVITGSGFSTDEREVIRAWAQRLGAGYSGDLVCRKTTHLVSKDLLKQYASAKYYKALEW 79

Query: 705 GVKIMN 710
           G+ I++
Sbjct: 80  GIAIVS 85


>gi|306836680|ref|ZP_07469644.1| competence protein ComEA family protein [Corynebacterium accolens
           ATCC 49726]
 gi|304567419|gb|EFM43020.1| competence protein ComEA family protein [Corynebacterium accolens
           ATCC 49726]
          Length = 225

 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
           A    + ++ N+     L  +  VG++ A+AIV F +       VE LL+       +  
Sbjct: 158 APAGGDKVSLNSATAAELTDLNGVGEVTAEAIVSFREERGGFKDVEELLEISGIGPAKFA 217

Query: 641 KNVSS 645
           K   +
Sbjct: 218 KLKDN 222


>gi|302669467|ref|YP_003829427.1| excinuclease ABC C subunit UvrC [Butyrivibrio proteoclasticus B316]
 gi|302393940|gb|ADL32845.1| excinuclease ABC C subunit UvrC [Butyrivibrio proteoclasticus B316]
          Length = 623

 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/140 (11%), Positives = 35/140 (25%), Gaps = 15/140 (10%)

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG-----DVSVTNLY 539
            +  Q LD           ++                       GF              
Sbjct: 493 NICLQVLDELGIHIPVCGMVKDDNHRTRGLYYNNVELPIDTRSEGFKLITRIQDEAHRFA 552

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
              ++      +       I  VG    ++L + + S ++                  L 
Sbjct: 553 IEYHRSLRSKSQVKSSLDDIPGVGPSRRKALMRNFKSIEDIRNA----------SVEELS 602

Query: 600 RVPLVGDIIAQAIVEFYQNP 619
           +VP + +  A+ I +F+ + 
Sbjct: 603 QVPEIPESTARQIYDFFHSE 622


>gi|238855548|ref|ZP_04645851.1| DNA polymerase III [Lactobacillus jensenii 269-3]
 gi|260665137|ref|ZP_05865987.1| DNA polymerase III [Lactobacillus jensenii SJ-7A-US]
 gi|282932326|ref|ZP_06337761.1| DNA polymerase III [Lactobacillus jensenii 208-1]
 gi|238831832|gb|EEQ24166.1| DNA polymerase III [Lactobacillus jensenii 269-3]
 gi|260561191|gb|EEX27165.1| DNA polymerase III [Lactobacillus jensenii SJ-7A-US]
 gi|281303547|gb|EFA95714.1| DNA polymerase III [Lactobacillus jensenii 208-1]
          Length = 316

 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 18/87 (20%)

Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-------DNPGSK 697
           +  +NK +VF+G++      +     T +G  V   +   T+ +++G        NP  +
Sbjct: 231 NPFKNKNIVFSGSIN----EELPVIATNMGGCVKTHVDSMTNYLVMGNQDFFSTSNP--E 284

Query: 698 LEKAQQL-----GVKIMNEEQFLFLLQ 719
           L+KA+ L      +  ++E  FL +L 
Sbjct: 285 LQKARSLIAEGNKISRISESFFLDMLD 311


>gi|126653877|ref|ZP_01725724.1| competence protein comEA [Bacillus sp. B14905]
 gi|126589602|gb|EAZ83741.1| competence protein comEA [Bacillus sp. B14905]
          Length = 211

 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 24/65 (36%)

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
           +  +  I  N  D  +L  +P +G   AQ+I+ + +       ++ L           EK
Sbjct: 144 ENKDQKININIADTETLATLPGIGPSKAQSILSYREENGRFQTIDDLRNVSGIGEKTFEK 203

Query: 642 NVSSE 646
              S 
Sbjct: 204 LKDSI 208


>gi|121535700|ref|ZP_01667504.1| protein of unknown function DUF147 [Thermosinus carboxydivorans
           Nor1]
 gi|121305731|gb|EAX46669.1| protein of unknown function DUF147 [Thermosinus carboxydivorans
           Nor1]
          Length = 359

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 8/69 (11%), Positives = 22/69 (31%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +   +  +L  ++ +                     L  V  +G++ A+ I +  + 
Sbjct: 299 IPRLPMLVVENLVAHFKTLHRIYNAT----------IAELDEVEGIGEVRAKTIKDGLKR 348

Query: 619 PRNICAVEA 627
            R    ++ 
Sbjct: 349 VREQALLDR 357


>gi|297618413|ref|YP_003703572.1| DNA integrity scanning, DisA, linker region [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297146250|gb|ADI03007.1| DNA integrity scanning, DisA, linker region [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 363

 Score = 40.5 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 7/50 (14%), Positives = 16/50 (32%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
             N      +           L  V  +G++ A++I    +  +    +E
Sbjct: 311 IDNLVATFGSFSNIIRASIEELDDVEGIGEVRARSIRNGLKRMQEQLILE 360


>gi|302840317|ref|XP_002951714.1| hypothetical protein VOLCADRAFT_109811 [Volvox carteri f.
           nagariensis]
 gi|300262962|gb|EFJ47165.1| hypothetical protein VOLCADRAFT_109811 [Volvox carteri f.
           nagariensis]
          Length = 339

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 11/22 (50%)

Query: 36  YQYSKPIILDSEYDALKRRCDA 57
           Y   KPI+ D EYD LK     
Sbjct: 137 YAKGKPIMSDEEYDLLKAELRN 158


>gi|27468194|ref|NP_764831.1| hypothetical protein SE1276 [Staphylococcus epidermidis ATCC 12228]
 gi|57867052|ref|YP_188733.1| comE operon protein 1 [Staphylococcus epidermidis RP62A]
 gi|27315740|gb|AAO04875.1|AE016748_109 ComEA [Staphylococcus epidermidis ATCC 12228]
 gi|57637710|gb|AAW54498.1| comE operon protein 1, putative [Staphylococcus epidermidis RP62A]
          Length = 224

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 23/62 (37%)

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
            N  +  N+     L  +P +G   A+ I+ + +      +++ L+K         EK  
Sbjct: 160 TNQPLNLNSATEEQLKNIPGIGPSKAKEILNYREQNHGFNSIDDLMKIKGFGKKTFEKLK 219

Query: 644 SS 645
             
Sbjct: 220 EH 221


>gi|331002139|ref|ZP_08325658.1| UvrABC system protein C [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411233|gb|EGG90649.1| UvrABC system protein C [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 611

 Score = 40.5 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 38/139 (27%), Gaps = 15/139 (10%)

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF-----GDVSVTNLY 539
            +  Q L+ F  +      ++                    +  GF              
Sbjct: 481 NICLQVLEEFGLNIPVCGMVKDDNHRTRGLYYNNVEIPIDTHSQGFLLITRIQDEAHRFA 540

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
              ++      +       I  +G    ++L K++   +N            N     L+
Sbjct: 541 IEYHRSLRSKTQVKSILDDIEGIGTVRRKALMKHFKDIENI----------KNASPDELM 590

Query: 600 RVPLVGDIIAQAIVEFYQN 618
            V  +    A+A+ EF+ N
Sbjct: 591 SVDGMNKKSAKAVYEFFSN 609


>gi|251811006|ref|ZP_04825479.1| competence protein comEA [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805516|gb|EES58173.1| competence protein comEA [Staphylococcus epidermidis BCM-HMP0060]
          Length = 224

 Score = 40.5 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 23/62 (37%)

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
            N  +  N+     L  +P +G   A+ I+ + +      +++ L+K         EK  
Sbjct: 160 TNQPLNLNSATEEQLKNIPGIGPSKAKEILNYREQNHGFNSIDDLMKIKGFGKKTFEKLK 219

Query: 644 SS 645
             
Sbjct: 220 EH 221


>gi|119367854|sp|Q3AXU8|UVRC_SYNS9 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 661

 Score = 40.5 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +GA+  R L  ++ S                    +L + P VG ++AQ I  F+ 
Sbjct: 590 DIPGLGAKRVRDLLSHFHSIDAIQLA----------SVDTLSKAPGVGPVLAQDIFNFFH 639


>gi|78184688|ref|YP_377123.1| excinuclease ABC subunit C [Synechococcus sp. CC9902]
 gi|78168982|gb|ABB26079.1| Excinuclease ABC subunit C [Synechococcus sp. CC9902]
          Length = 679

 Score = 40.5 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +GA+  R L  ++ S                    +L + P VG ++AQ I  F+ 
Sbjct: 608 DIPGLGAKRVRDLLSHFHSIDAIQLA----------SVDTLSKAPGVGPVLAQDIFNFFH 657


>gi|182412978|ref|YP_001818044.1| excinuclease ABC subunit C [Opitutus terrae PB90-1]
 gi|177840192|gb|ACB74444.1| excinuclease ABC C subunit domain protein [Opitutus terrae PB90-1]
          Length = 510

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/114 (11%), Positives = 27/114 (23%), Gaps = 13/114 (11%)

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           I    +   L          +   +        N Y+++ + + I         G+  V 
Sbjct: 388 IFFVDERPPLNLPLNHPGLNLLQRVRDEAHRFANTYNAVLRSKKIRESVLDDFAGLGPVR 447

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                 L  ++ S                     +  V   G  +A  +  F  
Sbjct: 448 RAA---LLAHFGSIDRLRAA----------SIEEIGEVEGFGPKLAAELHAFLA 488


>gi|150392192|ref|YP_001322241.1| DNA integrity scanning protein DisA [Alkaliphilus metalliredigens
           QYMF]
 gi|149952054|gb|ABR50582.1| protein of unknown function DUF147 [Alkaliphilus metalliredigens
           QYMF]
          Length = 358

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +   +  +L   + S+Q   +               L  V  +G+I A+AI E  + 
Sbjct: 298 IPRLPRSVVENLVNQFPSFQKILKA----------SIEKLDEVEGIGEIRARAIKEGLRR 347

Query: 619 PRNICAVEA 627
            +    ++ 
Sbjct: 348 LQEQVLLDR 356


>gi|15893799|ref|NP_347148.1| excinuclease ABC subunit C [Clostridium acetobutylicum ATCC 824]
 gi|21363070|sp|Q97LP6|UVRC_CLOAB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|15023370|gb|AAK78488.1|AE007565_7 Excinuclease ABC subunit C [Clostridium acetobutylicum ATCC 824]
 gi|325507922|gb|ADZ19558.1| excinuclease ABC subunit C [Clostridium acetobutylicum EA 2018]
          Length = 623

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I ++G +  ++L K++ S +N  +            +  L++ P +    A++IV +++
Sbjct: 569 DIPYIGEKRRKALLKHFGSIENIKKAT----------YEELMKTPSIDKKAAESIVSYFR 618


>gi|307297547|ref|ZP_07577353.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916807|gb|EFN47189.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 256

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
             ++N +I  N  D LSL  +P +G+  A+AIVEF +   +    + LLK          
Sbjct: 116 LADVNTLIDINKADVLSLQDIPGIGEAKAKAIVEFREKNGSFRTSDDLLKVPGIGPSILS 175

Query: 641 KNVSSEI 647
           + ++S +
Sbjct: 176 EILASIV 182


>gi|260102980|ref|ZP_05753217.1| DNA polymerase III [Lactobacillus helveticus DSM 20075]
 gi|260083211|gb|EEW67331.1| DNA polymerase III [Lactobacillus helveticus DSM 20075]
 gi|328464560|gb|EGF35931.1| DNA polymerase III [Lactobacillus helveticus MTCC 5463]
          Length = 317

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 29/128 (22%)

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVS----------SEIENKKLVFTGTLQKIQRHKAQ 667
           N  N    E LL++    I   +              + +++K +V +G L  + +  A 
Sbjct: 192 NDFNQHFTEDLLEQAIGKIKNVDLTGDEVDYYQLGFRNPVQDKNIVLSGNL-HMDQRDAG 250

Query: 668 EYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQQL-----GVKIMNEEQ 713
           + +  +G  +   + + T+ +I+G         ++    L +A  L      +K ++E  
Sbjct: 251 KMINNMGGQLDQNVEKTTNYLIMGDHDFFRKNNED----LNRAHLLIKDGAKIKRLSESF 306

Query: 714 FLFLLQQY 721
           FL +L  +
Sbjct: 307 FLSMLDDW 314


>gi|46126951|ref|XP_388029.1| hypothetical protein FG07853.1 [Gibberella zeae PH-1]
          Length = 765

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 640 EKNVSSEIENKKLVFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-- 694
           ++  S+ +    +V +G +    R    +        GA V   +S++   ++V  +   
Sbjct: 490 DELKSNVLSGLVIVLSGLVPLGVRVEESEIGLQAQSYGAQVLDTVSKRVTHLVV-SSARP 548

Query: 695 -GSKLEKAQQL-GVKIMNEEQFLFLLQQY 721
              K+++A ++  +KI+N+   +  L Q+
Sbjct: 549 RTKKVQQAAKIASIKIVNQNWLIDCLSQW 577


>gi|300087916|ref|YP_003758438.1| methenyltetrahydrofolate cyclohydrolase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527649|gb|ADJ26117.1| Methenyltetrahydrofolate cyclohydrolase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 295

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 22/83 (26%)

Query: 663 RHKAQE---YVTQLGAVVSAILSRKTDIIIVGDNP------GSKLEKAQQLGV-----KI 708
           R + +     +     +V          +IVGD+P      GSK+   ++LG+      +
Sbjct: 16  REELKAEVAALKDRHGIVPG-----LATVIVGDDPASQTYVGSKIRACKELGIHSANFPM 70

Query: 709 M---NEEQFLFLLQQYNTTLRIH 728
           +    E + L L+ + NT   IH
Sbjct: 71  LAETTEVELLELIDRLNTDPAIH 93


>gi|225076037|ref|ZP_03719236.1| hypothetical protein NEIFLAOT_01064 [Neisseria flavescens
           NRL30031/H210]
 gi|224952631|gb|EEG33840.1| hypothetical protein NEIFLAOT_01064 [Neisseria flavescens
           NRL30031/H210]
          Length = 108

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 559 IRHVGAEIARSLAKYY--LSYQNFAQE-INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
              +   + ++L K +   ++           +  N    + L  +P +G   A++IVE+
Sbjct: 2   TDSIKYVMGKNLMKKFLFGAFAAVCAAFSLAAVNINTASSVELEALPGIGPAKAKSIVEY 61

Query: 616 YQNPRNICAVEALLKEVSPSIGRHEK 641
            Q      +VE L            K
Sbjct: 62  RQKNGAFKSVEELKNVKGIGDAVLNK 87


>gi|195121496|ref|XP_002005256.1| GI20391 [Drosophila mojavensis]
 gi|193910324|gb|EDW09191.1| GI20391 [Drosophila mojavensis]
          Length = 880

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 12/72 (16%)

Query: 647 IENKKLVFTG------TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLE 699
           +  + LVF+G       L++  R         LGA V + +S+    ++   N G+ K+ 
Sbjct: 589 LRGQVLVFSGLVPTQMKLEQ-SRAYF--IAKSLGAEVQSNISKDVTHLVA-VNAGTYKVN 644

Query: 700 KA-QQLGVKIMN 710
            A ++  +K++N
Sbjct: 645 AAKKEPNIKVVN 656


>gi|255528215|ref|ZP_05395036.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Clostridium carboxidivorans P7]
 gi|255508088|gb|EET84507.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Clostridium carboxidivorans P7]
          Length = 183

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 39/107 (36%)

Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
            ++    +  ++L + +      +V  +  ++L        N     +  +  N      
Sbjct: 72  GFNETADKAKLNLAKKLKDEDYIYVDKQNDKNLPASSGGNANSNPASDGKVNINTATKEQ 131

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
           L  V  +GD+ AQ I+++ +   +  ++E L K         EK   
Sbjct: 132 LKTVSGIGDVTAQKIIDYREKNGSFNSIEDLKKVGRIGDKTLEKIKD 178


>gi|85717519|ref|ZP_01048465.1| Helicase RecD/TraA [Nitrobacter sp. Nb-311A]
 gi|85695672|gb|EAQ33584.1| Helicase RecD/TraA [Nitrobacter sp. Nb-311A]
          Length = 740

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 42/124 (33%), Gaps = 10/124 (8%)

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT-NLYDSINKRRNISLERFIFSLGIRH 561
            +       T+   +  + + +        +    +   +        +E+++ S  IR 
Sbjct: 42  LVTTVGHAATISAGEWITASGVWINDRTHGLQFKAHFLKTSAPSSIEGIEKYLGSGMIRG 101

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           +GA  A+ L K +           ++     +    L  V  +G I A  I+  + + + 
Sbjct: 102 IGAVYAKRLVKQFG---------KDVFDIIEETPERLREVEGIGPIRAARIISGWADQKV 152

Query: 622 ICAV 625
           I  +
Sbjct: 153 IREI 156


>gi|150015019|ref|YP_001307273.1| DNA integrity scanning protein DisA [Clostridium beijerinckii NCIMB
           8052]
 gi|189083125|sp|A6LPN7|DISA_CLOB8 RecName: Full=DNA integrity scanning protein disA
 gi|149901484|gb|ABR32317.1| protein of unknown function DUF147 [Clostridium beijerinckii NCIMB
           8052]
          Length = 354

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
             N  +E   +    + D   L  V  +G+  A AI +  +  +   +++ 
Sbjct: 302 IDNLIKEFEELSNIIDADINDLDNVEGIGEARATAIKDGLKRIKEQVSLKK 352


>gi|49388337|dbj|BAD25449.1| putative seed maturation protein [Oryza sativa Japonica Group]
          Length = 737

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/94 (11%), Positives = 32/94 (34%), Gaps = 15/94 (15%)

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH--KAQEYVTQLGAVVSAILSRKT 685
           L ++      +   +         +  +G   ++ R     +E + + G  V+  +    
Sbjct: 90  LKQQEGNKYPKRNLDDEGIFSGMMIALSG---RMSRSHGYFKEQIMKHGGKVNNSVIG-V 145

Query: 686 DIIIV-------GDNPGSKLEKAQQLGVKIMNEE 712
             ++        G + G    +A + G  +++E 
Sbjct: 146 TCVVASPAERHQGGSGG--FAEALERGTPVVSEN 177


>gi|291550845|emb|CBL27107.1| competence protein ComEA helix-hairpin-helix repeat region
           [Ruminococcus torques L2-14]
          Length = 233

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%)

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
            +++ I  N      L+ +  +G   A++I+++ Q   N  ++E L K      G   K 
Sbjct: 168 SVSDKININTAAKEELMTLSGIGASKAESILKYRQEHGNFQSIEDLKKIEGIKDGVFNKI 227

Query: 643 VS 644
             
Sbjct: 228 KD 229


>gi|119961905|ref|YP_946007.1| DNA integrity scanning protein DisA [Arthrobacter aurescens TC1]
 gi|119948764|gb|ABM07675.1| putative DNA-binding protein [Arthrobacter aurescens TC1]
          Length = 358

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 10/72 (13%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           G++ V   +A  L  Y+   QN                  L+ V  +GD  A+ + E   
Sbjct: 297 GLKSVPKAVADRLVDYFGGLQNLMAAT----------IDDLMTVDGIGDQRARTVREGLS 346

Query: 618 NPRNICAVEALL 629
                  ++  L
Sbjct: 347 RMAEASLLDRFL 358


>gi|119703755|ref|NP_002283.3| laminin subunit beta-2 precursor [Homo sapiens]
 gi|156630892|sp|P55268|LAMB2_HUMAN RecName: Full=Laminin subunit beta-2; AltName: Full=Laminin B1s
            chain; AltName: Full=Laminin-11 subunit beta; AltName:
            Full=Laminin-14 subunit beta; AltName: Full=Laminin-15
            subunit beta; AltName: Full=Laminin-3 subunit beta;
            AltName: Full=Laminin-4 subunit beta; AltName:
            Full=Laminin-7 subunit beta; AltName: Full=Laminin-9
            subunit beta; AltName: Full=S-laminin subunit beta;
            Short=S-LAM beta; Flags: Precursor
 gi|119585362|gb|EAW64958.1| laminin, beta 2 (laminin S), isoform CRA_a [Homo sapiens]
 gi|119585363|gb|EAW64959.1| laminin, beta 2 (laminin S), isoform CRA_a [Homo sapiens]
 gi|225000494|gb|AAI72384.1| Laminin, beta 2 (laminin S) [synthetic construct]
          Length = 1798

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 41/493 (8%), Positives = 76/493 (15%), Gaps = 66/493 (13%)

Query: 157  GHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN--------DEMIAV 208
            G  G     C                   E        K     L          +    
Sbjct: 807  GVVGRRCDLCAPGYYGFGPTGCQACQCSHEGALSSLCEKTSGQCLCRTGAFGLRCDRCQR 866

Query: 209  GRKPYANPRNAAS------------GILRRLNPTDITRYLNFF---------VHGLGKTS 247
            G+  + + R                  L   + T                   +G     
Sbjct: 867  GQWGFPSCRPCVCNGHADECNTHTGACLGCRDHTGGEHCERCIAGFHGDPRLPYGGQCRP 926

Query: 248  EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE----------MKSIRSTLPY 297
                +G                +     +   G      E           +        
Sbjct: 927  CPCPEGPGSQRHFATSCHQDEYSQQIVCHCRAGYTGLRCEACAPGHFGDPSRPGGRCQLC 986

Query: 298  DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
            +  G +  +D  +     G+  R                        Q            
Sbjct: 987  ECSGNIDPMDPDACDPHTGQCLRC-LHHTEGPHCAHCKPGFHGQAARQSCHR-------- 1037

Query: 358  LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI---RVGDRVLVKRAGEVIPKVV 414
                N+ G         ++ +          +   +     R         +G       
Sbjct: 1038 -CTCNLLGTNPQQCPSPDQCHCDPSSGQCPCLPNVQGPSCDRCAPNFWNLTSGHGCQPCA 1096

Query: 415  DIIVNERHPDAQPFSFPSFCPIC-----QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                  R P    F+    C         S          G    A  C      + Q  
Sbjct: 1097 CHPSRARGPTCNEFTGQCHCRAGFGGRTCSECQELHWGDPGLQCHACDCDSRGIDTPQCH 1156

Query: 470  ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
                H   R   +     +                             +           
Sbjct: 1157 RFTGHCSCRPGVSGVRCDQ------CARGFSGIFPACHPCHACFGDWDRVVQDLAARTQR 1210

Query: 530  FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
                +       +      S       LGI         + A    S     +    +  
Sbjct: 1211 LEQRAQELQQTGVLGAFESSFWHMQEKLGIVQGIVGARNTSAA---STAQLVEATEELRR 1267

Query: 590  HNNDDWLSLIRVP 602
               +    L ++ 
Sbjct: 1268 EIGEATEHLTQLE 1280


>gi|1103585|emb|CAA92279.1| laminin beta 2 chain [Homo sapiens]
          Length = 1798

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 41/493 (8%), Positives = 76/493 (15%), Gaps = 66/493 (13%)

Query: 157  GHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN--------DEMIAV 208
            G  G     C                   E        K     L          +    
Sbjct: 807  GVVGRRCDLCAPGYYGFGPTGCQACQCSHEGALSSLCEKTSGQCLCRTGAFGLRCDRCQR 866

Query: 209  GRKPYANPRNAAS------------GILRRLNPTDITRYLNFF---------VHGLGKTS 247
            G+  + + R                  L   + T                   +G     
Sbjct: 867  GQWGFPSCRPCVCNGHADECNTHTGACLGCRDHTGGEHCERCIAGFHRDPRLPYGGQCRP 926

Query: 248  EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE----------MKSIRSTLPY 297
                +G                +     +   G      E           +        
Sbjct: 927  CPCPEGPGSQRHFATSCHQDEYSQQIVCHCRAGYTGLRCEACAPGHFGDPSRPGGRCQLC 986

Query: 298  DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
            +  G +  +D  +     G+  R                        Q            
Sbjct: 987  ECSGNIDPMDPDACDPHTGQCLRC-LHHTEGPHCAHCKPGFHGQAARQSCHR-------- 1037

Query: 358  LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI---RVGDRVLVKRAGEVIPKVV 414
                N+ G         ++ +          +   +     R         +G       
Sbjct: 1038 -CTCNLLGTNPQQCPSPDQCHCDPSSGQCPCLPNVQGPSCDRCAPNFWNLTSGHGCQPCA 1096

Query: 415  DIIVNERHPDAQPFSFPSFCPIC-----QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                  R P    F+    C         S          G    A  C      + Q  
Sbjct: 1097 CHPSRARGPTCNEFTGQCHCRAGFGGRTCSECQELHWGDPGLQCHACDCDSRGIDTPQCH 1156

Query: 470  ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
                H   R   +     +                             +           
Sbjct: 1157 RFTGHCSCRPGVSGVRCDQ------CARGFSGIFPACHPCHACFGDWDRVVQDLAARTQR 1210

Query: 530  FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
                +       +      S       LGI         + A    S     +    +  
Sbjct: 1211 LEQRAQELQQTGVLGAFESSFWHMQEKLGIVQGIVGARNTSAA---STAQLVEATEELRR 1267

Query: 590  HNNDDWLSLIRVP 602
               +    L ++ 
Sbjct: 1268 EIGEATEHLTQLE 1280


>gi|325087549|gb|EGC40859.1| RNA polymerase II C-terminal domain phosphatase component
           [Ajellomyces capsulatus H88]
          Length = 885

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 653 VFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKI 708
           VF+G L             +    GA++S  +S KT  ++ G N  +K+ +A +   +KI
Sbjct: 501 VFSGVLPLGTDTQNADISLWAKSFGAIISQKISSKTTHLVAGRNRTAKVREATRYPNIKI 560

Query: 709 MNEEQFLFLLQQYN 722
           +  +  L  + Q+ 
Sbjct: 561 VTVQWLLDSITQWK 574


>gi|315607498|ref|ZP_07882493.1| M16 family peptidase [Prevotella buccae ATCC 33574]
 gi|315250681|gb|EFU30675.1| M16 family peptidase [Prevotella buccae ATCC 33574]
          Length = 941

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 37/124 (29%), Gaps = 26/124 (20%)

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
            E A+ L     S      ++        +    L     +  + A+ I  +  N +N  
Sbjct: 450 NEAAKELITESDSNLVITAQVQEKEGKTYNTVADLKST--IAKVRAEQIAAYVDNVKNEP 507

Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
            +  L K+   +    +K +                       ++ +   GA V   + +
Sbjct: 508 LISQLPKKGKITKETEDKKLG---------------------FKKLILSNGAKV---ILK 543

Query: 684 KTDI 687
           KTD 
Sbjct: 544 KTDF 547


>gi|289425248|ref|ZP_06427025.1| comEA protein [Propionibacterium acnes SK187]
 gi|289154226|gb|EFD02914.1| comEA protein [Propionibacterium acnes SK187]
          Length = 283

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 21/61 (34%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              +  N  +   L  +  VG ++A  I+ + Q      +V+ L +         EK   
Sbjct: 220 KAPVNLNTANQSELETIDGVGPVMAGNIMAWRQEHGQFASVDQLREISGIGAKTFEKIKP 279

Query: 645 S 645
            
Sbjct: 280 H 280


>gi|281206665|gb|EFA80851.1| putative tfiif-interacting component of the c-terminal domain
           phosphatase [Polysphondylium pallidum PN500]
          Length = 881

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 643 VSSEIENKKLVFTGT----LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698
               +    LVF+G     L    R   +    +LGA V   ++  T  ++      SK+
Sbjct: 585 KKKILNGVNLVFSGVYPLQLPAH-RQPLRLLAEELGATVQNDITNTTTHVVAARKGTSKV 643

Query: 699 EKAQQLGVKIMNEE 712
            KA   G+KI+N+ 
Sbjct: 644 HKAISKGLKIVNQN 657


>gi|255657363|ref|ZP_05402772.1| excinuclease ABC subunit C [Clostridium difficile QCD-23m63]
 gi|296451823|ref|ZP_06893542.1| excision endonuclease subunit UvrC [Clostridium difficile NAP08]
 gi|296879781|ref|ZP_06903755.1| excision endonuclease subunit UvrC [Clostridium difficile NAP07]
 gi|296259302|gb|EFH06178.1| excision endonuclease subunit UvrC [Clostridium difficile NAP08]
 gi|296429252|gb|EFH15125.1| excision endonuclease subunit UvrC [Clostridium difficile NAP07]
          Length = 605

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I+ +G +  +SL  ++       +               L+ V  +   IA  +  F++
Sbjct: 552 DIQGIGEKRKKSLLNHFKDVDAIKKAT----------MEELLEVDGMNKSIADNVYNFFR 601

Query: 618 NPRN 621
              N
Sbjct: 602 KEAN 605


>gi|307210677|gb|EFN87100.1| Laminin subunit beta-1 [Harpegnathos saltator]
          Length = 1700

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/495 (7%), Positives = 95/495 (19%), Gaps = 34/495 (6%)

Query: 160  GEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNA 219
            G         + T       N       + E            +                
Sbjct: 751  GVGALDNFCDVETGRCKCRRNTYGRTCGQCEPGFWNFPHCQRCECNGHADSCDPKTGACI 810

Query: 220  ASGILRRLNPTDITRYLNFF--VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANT 277
                    +  D      +     G+                     G  +++  +    
Sbjct: 811  NCRDYTTGHNCDRCIDTFYGDPRIGVDIPCRACPCPGTLGSGHSYADGCSLDSITQDVVC 870

Query: 278  FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAST 337
                       +          +  +        +       R P     H     Q   
Sbjct: 871  ECFEGYAGPRCEHCAENYF--GNPEISGGSCIRCECNNNTDLRQPGNCDPHNGRCLQCLH 928

Query: 338  RLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRV 397
                 + QI +                                          G  D R 
Sbjct: 929  NTDGFNCQICK---PGFYGNALRQECQDCSCN-------------VLGTDKAAGPCDHRT 972

Query: 398  GDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR 457
            G    +       P V+  + +    +    +    C  C+   V  ++ +         
Sbjct: 973  GQCPCL-------PHVIGQLCDSCEENHWRIASGEGCDPCECDAVGSVSDRCNPYDGTCE 1025

Query: 458  CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ 517
            C  G         +   + + +                + +     + +       ++  
Sbjct: 1026 CRPGFGGRRCNECQTNFWGNPNIECYPCECDVIGSASQQCDRETG-VCVCHKGIGGEKCD 1084

Query: 518  QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577
            Q                       +      +    +     R      +   ++ +   
Sbjct: 1085 QCDRGYHGEAPQCSPCGECFDNWDLILSGLRNKTDVVIDEASRIQKVGTSGVYSQEFDDM 1144

Query: 578  QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI-CAVEALLKEVSPSI 636
            +    EI  +I++       L  +     I+A  +             V  LL+ VS  +
Sbjct: 1145 EKSLNEIKALISNTTIRGQDLDALD----ILAAGLERNISESAQQLENVNNLLENVSQRV 1200

Query: 637  GRHEKNVSSEIENKK 651
               +  +   ++N+ 
Sbjct: 1201 NLGDVALKG-LKNRT 1214


>gi|217967867|ref|YP_002353373.1| excinuclease ABC, C subunit [Dictyoglomus turgidum DSM 6724]
 gi|217336966|gb|ACK42759.1| excinuclease ABC, C subunit [Dictyoglomus turgidum DSM 6724]
          Length = 598

 Score = 40.2 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 6/43 (13%), Positives = 18/43 (41%)

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
              +   +  N++ +        L ++P + + IA+ I  ++ 
Sbjct: 553 KRMKILLEAFNDLESLKKASLEDLKKIPGISEKIAEKIYLYFH 595


>gi|200389057|ref|ZP_03215669.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199606155|gb|EDZ04700.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 62

 Score = 40.2 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719
             E        V + +++   ++  G N G SK+  A+  G  I++EE F+  ++
Sbjct: 1   MIEVAEAHSMTVRSSVTQNLQMLCCGYNAGPSKVNAARMKGTIIIDEESFVHFIE 55


>gi|115871967|ref|XP_785636.2| PREDICTED: similar to PAXIP1 protein [Strongylocentrotus
           purpuratus]
          Length = 627

 Score = 40.2 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703
             +++ +  TG  +  +R+  +  +   GA  +   SR   ++I     G+K EKAQ+
Sbjct: 349 PCKDQIIAVTG-FEGGERNDVKTMIEMTGAKYTGFFSRGNTLLICKRLEGAKYEKAQE 405


>gi|222056019|ref|YP_002538381.1| Helix-hairpin-helix DNA-binding class 1 [Geobacter sp. FRC-32]
 gi|221565308|gb|ACM21280.1| Helix-hairpin-helix DNA-binding class 1 [Geobacter sp. FRC-32]
          Length = 189

 Score = 40.2 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
           ++     DDW +L   P +G   A+ IV + Q+    C++E L      S G+ EK
Sbjct: 129 DLGLMEEDDWEAL---PGIGPTTAKDIVNYRQDNGGFCSIEELKSVKGISEGKVEK 181


>gi|239831533|ref|ZP_04679862.1| excinuclease ABC, C subunit [Ochrobactrum intermedium LMG 3301]
 gi|239823800|gb|EEQ95368.1| excinuclease ABC, C subunit [Ochrobactrum intermedium LMG 3301]
          Length = 702

 Score = 40.2 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/110 (11%), Positives = 32/110 (29%), Gaps = 15/110 (13%)

Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568
             FTL  R                          ++ R            I  +G    R
Sbjct: 607 QAFTLPPRDPVLYFIQRLRD-----EAHRFAIGTHRARRKKEMVKNPLDEIAGIGPSRKR 661

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +L  ++ +            A +      L+++  + + +A+ I + +++
Sbjct: 662 ALLHHFGT----------AKAVSRAAVEDLMQIDGISEAMARTIHDHFRD 701


>gi|313205089|ref|YP_004043746.1| cytoplasmic peptidoglycan synthetase domain protein [Paludibacter
           propionicigenes WB4]
 gi|312444405|gb|ADQ80761.1| cytoplasmic peptidoglycan synthetase domain protein [Paludibacter
           propionicigenes WB4]
          Length = 486

 Score = 40.2 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 36/74 (48%), Gaps = 13/74 (17%)

Query: 664 HKAQEYVTQLG-------AVVSAILSRKTDIIIVG---DNPGSKLEKAQQLGVKIMNEEQ 713
           ++ +E +   G           + ++ +TD+++     ++   +++KA++L + I+   +
Sbjct: 75  NETREKLEAEGILCFLQDG---SGITAQTDLVVASTAIEDTVFEVQKAKELNIPILRRSE 131

Query: 714 FLFLLQQYNTTLRI 727
            L L+ +   T+ +
Sbjct: 132 VLALIAESKKTIAV 145


>gi|225677466|gb|EEH15750.1| S-M checkpoint control protein Rad4p [Paracoccidioides brasiliensis
           Pb03]
          Length = 880

 Score = 40.2 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 7/95 (7%)

Query: 628 LLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKT 685
            +    P++   E+           +  TG  + +  R+  Q  +T+ G      L++  
Sbjct: 88  WMLGGDPNLEELEEQYRYPTFAGLSICLTG-FEDMNTRNHLQRTITENGGEFRRDLTKSV 146

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +I     G K + A    + +++    L  L+ 
Sbjct: 147 THLIARSGCGQKYKYATLWKITVVS----LKWLED 177


>gi|254409654|ref|ZP_05023435.1| excinuclease ABC, C subunit [Microcoleus chthonoplastes PCC 7420]
 gi|196183651|gb|EDX78634.1| excinuclease ABC, C subunit [Microcoleus chthonoplastes PCC 7420]
          Length = 675

 Score = 40.2 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 10/50 (20%)

Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           + L  ++ S     +               L  VP +G  +A+ I  ++ 
Sbjct: 635 KQLLAHFRSIDYIREA----------SVQQLAEVPGIGSRLAEDIYTYFH 674


>gi|227894158|ref|ZP_04011963.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047]
 gi|227864030|gb|EEJ71451.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047]
          Length = 318

 Score = 40.2 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 29/128 (22%)

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVS----------SEIENKKLVFTGTLQKIQRHKAQ 667
           N  N    E LL+     I   +              + ++NK +V +G +  + +++A 
Sbjct: 193 NDFNKHFTEELLEAARSRIKNFDLTGDELDYYQLGFRNPVQNKDIVLSGHI-HMDQNEAN 251

Query: 668 EYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQQL-----GVKIMNEEQ 713
           + +  +G  V   +   T+ +I+G         ++    L  A+ L      +K ++E  
Sbjct: 252 KMIGNMGGTVDDGVLATTNYLIMGDHDFFRKDNED----LNTARDLIKNGAKIKRLSESF 307

Query: 714 FLFLLQQY 721
           FL +L  +
Sbjct: 308 FLGMLDDW 315


>gi|8170714|gb|AAB34682.2| laminin beta 2 chain [Homo sapiens]
          Length = 1798

 Score = 40.2 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 48/494 (9%), Positives = 86/494 (17%), Gaps = 59/494 (11%)

Query: 157  GHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN--------DEMIAV 208
            G  G     C                   E        K     L          +    
Sbjct: 807  GVVGRRCDLCAPGYYGFGPTGCQACQCSHEGALSSLCEKTSGQCLCRTGAFGLRCDRCQR 866

Query: 209  GRKPYANPRNAAS------------GILRRLNPTDITRYLNFF---------VHGLGKTS 247
            G+  + + R                  L   + T                   +G     
Sbjct: 867  GQWGFPSCRPCVCNGHADECNTHTGACLGCRDHTGGEHCERCIAGFHGDPRLPYGGQCRP 926

Query: 248  EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE----------MKSIRSTLPY 297
                +G                +     +   G      E           +        
Sbjct: 927  CPCPEGPGSQRHFATSCHQDEYSQQIVCHCRAGYTGLRCEACAPGHFGDPSRPGGRCQLC 986

Query: 298  DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357
            +  G +  +D  +     G+  R                        Q            
Sbjct: 987  ECSGNIDPMDPDACDPHTGQCLRC-LHHTEGPHCAHCKPGFHGQAARQSCHR-------- 1037

Query: 358  LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI---RVGDRVLVKRAGEVIPKVV 414
                N+ G         ++ +          +   +     R         +G       
Sbjct: 1038 -CTCNLLGTNPQQCPSPDQCHCDPSSGQCPCLPNVQGPSCDRCAPNFWNLTSGHGCQPCA 1096

Query: 415  DIIVNERHPDAQPFSFPSFCPIC-----QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469
                  R P    F+    C         S          G    A  C      + Q  
Sbjct: 1097 CHPSRARGPTCNEFTGQCHCRAGFGGRTCSECQELHWGDPGLQCHACDCDSRGIDTPQCH 1156

Query: 470  ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529
                H   R   +     +     F                +  +  Q  +         
Sbjct: 1157 RFTGHCSCRPGVSGVRCDQ-CARAFSGIFPACHPCHACFGDWD-RVVQDLAARTQRLEQR 1214

Query: 530  FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
              ++  T +  +         E+     GI       A S A+   + +   +EI     
Sbjct: 1215 AQELQQTGVLGAFESSFWHMQEKLGIVQGIVGARNTSAASTAQLVEATEELRREIGEATE 1274

Query: 590  HNNDDWLSLIRVPL 603
            H       L  V  
Sbjct: 1275 HLTQLEADLTDVQD 1288


>gi|73964255|ref|XP_537500.2| PREDICTED: similar to a disintegrin and metalloproteinase domain 21
           preproprotein [Canis familiaris]
          Length = 1476

 Score = 40.2 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 68/286 (23%), Gaps = 17/286 (5%)

Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259
            ++               N         +     + +N     L  T +  A  Q+ +  
Sbjct: 429 CIHSPPYPGNVFKVQYCGNLVIEEGEECDCGTTDQCVNDPCCLLNCTLKPGAACQFGICC 488

Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319
           K   L  P     R   +   +  + N          Y  DG+    + +  + +     
Sbjct: 489 KDCKL-MPSGTLCRHQISECDLPEWCNGTFHQCPEDVYVQDGIPCGDNAYCYEGRCNNHD 547

Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV-ARLEPVNIGGALITNATLHNEDY 378
           +     I  K A   + +   +I+ Q  R G                 L       N + 
Sbjct: 548 KQ-CREIFGKDARSASQSCYKEINTQGNRFGHCGITNLVYVKCEGPDILCGRVQCENVEM 606

Query: 379 IKGLDASGKVMRGGRD--IRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           I  L     V +   +     G    +   G  IP V  +         +         +
Sbjct: 607 IPNLIQHSTVHQLHINDTTCWGTDFHL---GMSIPDVGQVKDGTICGPEKICLHKKCVNM 663

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482
                    N           C     C+ +Q    KH  +     
Sbjct: 664 TYPPRKCHSNET---------CHMHGVCNNKQHCHCKHGWAPPYCK 700


>gi|296479253|gb|DAA21368.1| poly [ADP-ribose] polymerase 1 [Bos taurus]
          Length = 1016

 Score = 40.2 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 19/83 (22%)

Query: 644 SSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAI-------LSRK--TDIIIVGDN 693
              + N K+  T G L +  + + +  + +LG  ++         +S K   D       
Sbjct: 389 DKPLSNMKI-LTLGKLSQ-NKDEVKATIEKLGGKLTGTANKASLCISTKKEVD------K 440

Query: 694 PGSKLEKAQQLGVKIMNEEQFLF 716
              K+E+ ++  +++++E+ FL 
Sbjct: 441 MNKKMEEVKEANIRVVSED-FLQ 462


>gi|269836449|ref|YP_003318677.1| excinuclease ABC, C subunit [Sphaerobacter thermophilus DSM 20745]
 gi|269785712|gb|ACZ37855.1| excinuclease ABC, C subunit [Sphaerobacter thermophilus DSM 20745]
          Length = 609

 Score = 40.2 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 10/79 (12%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                + +++R           G++ VG    ++L K + S     Q             
Sbjct: 537 HRFAVTFHRKRRTKSTFRSALDGLKGVGPARRKALLKTFGSVARIRQA----------SV 586

Query: 596 LSLIRVPLVGDIIAQAIVE 614
             L  VP +G  +A+ I E
Sbjct: 587 EELAAVPGIGPRLAEQIKE 605


>gi|156378154|ref|XP_001631009.1| predicted protein [Nematostella vectensis]
 gi|156218041|gb|EDO38946.1| predicted protein [Nematostella vectensis]
          Length = 1428

 Score = 40.2 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT-DIIIVGDNPGSKLEKAQQL 704
             +   +  TG L    R + ++   Q G V S  L+  T   ++V    G K E A++ 
Sbjct: 147 IFKGCTICVTG-LDAQTRQEVKQLCNQNGGVYSGELNMNTCTHLLVNQPKGEKYEFARKW 205

Query: 705 GV 706
            +
Sbjct: 206 NI 207


>gi|13357937|ref|NP_078211.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC
            700970]
 gi|170762156|ref|YP_001752460.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|13959349|sp|Q9PQB4|DPO3_UREPA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|11279168|pir||C82898 DNA polymerase III alpha chain 1 UU377 [imported] - Ureaplasma
            urealyticum
 gi|6899360|gb|AAF30786.1|AE002135_2 DNA polymerase III alpha chain 1 [Ureaplasma parvum serovar 3 str.
            ATCC 700970]
 gi|168827733|gb|ACA32995.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 3 str. ATCC 27815]
          Length = 1442

 Score = 40.2 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 15/127 (11%)

Query: 540  DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595
            +  +K R+   +     L ++ +   +   LA+ +     S +        I   NN   
Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKENNAII 1378

Query: 596  LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
               I +  +G+ +A +I+E  +N +    +E L      S           ++N +++  
Sbjct: 1379 PPFIAIQGLGETVANSIIEA-RNQKVFSTIEDLKNRTKISRTD--------LKNLRVL-- 1427

Query: 656  GTLQKIQ 662
            G L  + 
Sbjct: 1428 GVLDHLS 1434


>gi|71019605|ref|XP_760033.1| hypothetical protein UM03886.1 [Ustilago maydis 521]
 gi|46099826|gb|EAK85059.1| hypothetical protein UM03886.1 [Ustilago maydis 521]
          Length = 919

 Score = 40.2 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            R    + +  +GA  S  LS +T I +  +    K +KA++  V I+N
Sbjct: 405 TRQYLTKMIKLMGATFSGALSARTSICVAANLDSEKTQKAKEWKVPIVN 453


>gi|183508608|ref|ZP_02958116.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 14 str. ATCC 33697]
 gi|182676065|gb|EDT87970.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 14 str. ATCC 33697]
          Length = 1442

 Score = 40.2 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 540  DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595
            +  +K R+   +     L ++ +   +   LA+ +     S +        I   NN   
Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKENNAII 1378

Query: 596  LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
               I +  +G+ +A +I+E  +N +    +E L  
Sbjct: 1379 PPFIAIQGLGETVANSIIEA-RNQKVFSTIEDLKN 1412


>gi|302391529|ref|YP_003827349.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203606|gb|ADL12284.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetohalobium
           arabaticum DSM 5501]
          Length = 454

 Score = 40.2 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 673 LGAVVSAILSRKTDIIIVGDNPGSK---LEKAQQLGVKIMNEEQF 714
           LG   S+ ++  TD+I+V     S    LEKAQ LG+ +++E + 
Sbjct: 59  LGGH-SSKVTDNTDLIVVSPGVPSDIPILEKAQSLGIPVISEIEL 102


>gi|291522757|emb|CBK81050.1| competence protein ComEA helix-hairpin-helix repeat region
           [Coprococcus catus GD/7]
          Length = 209

 Score = 40.2 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638
           +  N ++  N      L  +P +G   A AIV + +N  N  ++E L K      G 
Sbjct: 142 EVSNGLVNINTATAEQLQTLPGIGQAKANAIVAYRENNGNFSSIEDLRKVPGIKEGV 198


>gi|331229715|ref|XP_003327523.1| hypothetical protein PGTG_09057 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309306513|gb|EFP83104.1| hypothetical protein PGTG_09057 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1291

 Score = 40.2 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 26/48 (54%)

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           R    + + ++    S  L + T +++  +  GSK++ A + G++I+N
Sbjct: 524 RAHLIKLIEKMHMTFSGALDQNTFMVVAANKAGSKVDFANKSGIQIVN 571


>gi|224823841|ref|ZP_03696950.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Lutiella nitroferrum 2002]
 gi|224604296|gb|EEG10470.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Lutiella nitroferrum 2002]
          Length = 119

 Score = 40.2 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 1/86 (1%)

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
            + L     S   F       I  N      L  +  +G   A+AI+++         V+
Sbjct: 1   MKKLLLILASVLAFCSSAMAAINLNTATQQELESLNGIGPAKAKAIMDYRTKQGPFKTVD 60

Query: 627 ALLKEVSPSIGRHEK-NVSSEIENKK 651
            L           EK      +  K 
Sbjct: 61  ELKNVPGIGDKTLEKLRKDIAVSGKS 86


>gi|307244714|ref|ZP_07526816.1| DNA integrity scanning family protein [Peptostreptococcus stomatis
           DSM 17678]
 gi|306491891|gb|EFM63942.1| DNA integrity scanning family protein [Peptostreptococcus stomatis
           DSM 17678]
          Length = 358

 Score = 40.2 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +   I  +L +++ S+Q+  +               L  V  +G+I A  I      
Sbjct: 298 IHKLPEGIIDNLIEHFGSFQDILEA----------SIEELDEVDGIGEIRATYIRNGLIK 347

Query: 619 PRNICAVEA 627
            + +  ++ 
Sbjct: 348 MKRLAVLDR 356


>gi|253681767|ref|ZP_04862564.1| excinuclease ABC subunit C [Clostridium botulinum D str. 1873]
 gi|253561479|gb|EES90931.1| excinuclease ABC subunit C [Clostridium botulinum D str. 1873]
          Length = 622

 Score = 40.2 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 11/64 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I ++G +  + L K + S  N  +            +  L+    + +  A +I++++ 
Sbjct: 569 DIPNIGIKRRKELLKKFGSIDNIKKA----------SYNELLSTDSINEKAATSIIDYF- 617

Query: 618 NPRN 621
           N  N
Sbjct: 618 NKHN 621


>gi|222151870|ref|YP_002561030.1| hypothetical protein MCCL_1627 [Macrococcus caseolyticus JCSC5402]
 gi|222120999|dbj|BAH18334.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 297

 Score = 40.2 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
            +    + N      NK++  TGTL  ++R    +Y+   G 
Sbjct: 202 ITPDTSKVNKDHLFYNKRIAITGTL-HMKRKDIVQYIVNNGG 242


>gi|50550359|ref|XP_502652.1| YALI0D10285p [Yarrowia lipolytica]
 gi|49648520|emb|CAG80840.1| YALI0D10285p [Yarrowia lipolytica]
          Length = 818

 Score = 40.2 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/333 (8%), Positives = 58/333 (17%), Gaps = 18/333 (5%)

Query: 166 CIRAIPTIPRVLSLNIPEIIEVRGEVYIS--KNDFLALNDEMIAVGRK--PYANPRNAAS 221
              A     R     +        EV                   G              
Sbjct: 230 MSCACGRSRRQWPCVLTPYKGWSCEVVCGEIMPCGEHTCSRQCHTGLCSVCVETTPAKCF 289

Query: 222 GILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG-VRQANTFHG 280
                 N T          +G     ++        + K   +  P  +       +   
Sbjct: 290 CGKTEKNITCHMDEEMQNQNGRYSCEDVCDTLFDCGIHKCEEICHPFVSHECPLIPSRQT 349

Query: 281 IVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRL- 339
                                 V        +       + P+   S      + + ++ 
Sbjct: 350 HCYCGQTKNEDLGIERTKCTDAVPTCSLTCSKTLSSCDHKCPQKCHSGDCPPCKETVKMH 409

Query: 340 -----LDIDIQIGR------TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388
                    +  G       T     +                 +  +   +      ++
Sbjct: 410 CSCGRQTFSVPCGTSETPKCTHKCAALLSCRKHYCMDECCEWEAVAIQREKQRKKTGAQI 469

Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS-FCPICQSRVVRDLNP 447
                               +             P  Q  S+    CP  ++     +  
Sbjct: 470 PVEEPKHHCEKNCNRLLKCGIHRCPDRCHSGACKPCMQATSWDDVNCPCGRTTTYAPIRC 529

Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
            T   V A  C     C  ++++   H  S   
Sbjct: 530 GTALEVCAWPCERDPPCGHRRIQHTCHSDSEPC 562


>gi|291393661|ref|XP_002713463.1| PREDICTED: laminin, beta 2 [Oryctolagus cuniculus]
          Length = 1802

 Score = 40.2 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/369 (8%), Positives = 56/369 (15%), Gaps = 22/369 (5%)

Query: 239  FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298
               G G           +   +             + +T           +      P +
Sbjct: 933  CPEGPGSQRHFATSCHQDGYSQQIMCHCQAGYTGVRCDTCAPGHFGDP-SRPGGRCQPCE 991

Query: 299  IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358
              G +  +D  +   + G+  R   +                    Q             
Sbjct: 992  CSGNIDPMDPDACDPRTGQCLRC-LYHTEGPHCAHCKPGFHGQAARQSCHRCTCNL-LGT 1049

Query: 359  EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418
             P                     L             R         +G         + 
Sbjct: 1050 NPQQCPSTDQCYCD-PTTGQCPCLPNVQGPSCD----RCAPNFWNLTSGHGCQPCACHLS 1104

Query: 419  NERHPDAQPFSFPSFCPIC-----QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473
              R P    F+    C         S          G    A  C      + Q      
Sbjct: 1105 RARGPTCNEFTGQCHCLAGFGGRTCSECQELHWGDPGLQCRACDCDPRGIDTPQCHRSTG 1164

Query: 474  HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533
            H   R   +     +                             +               
Sbjct: 1165 HCSCRPGVSGVRCDQ------CARGFSGVFPACYPCHACFGDWDRVVQDLAARTRRLQQR 1218

Query: 534  SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593
            +       +      S       LG          + A    S     +    +      
Sbjct: 1219 AQELQQTGVLGAFESSFWDLQEKLGTVQTIVGARNASAA---STARLMEATEELRREIGA 1275

Query: 594  DWLSLIRVP 602
                L ++ 
Sbjct: 1276 ATEHLTQLE 1284


>gi|313224695|emb|CBY20486.1| unnamed protein product [Oikopleura dioica]
          Length = 1288

 Score = 40.2 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K + FT  + K  R   Q+ V ++   + + +++  DI++VG+    K   A +LG+K +
Sbjct: 112 KNVCFT-NVPKEDREALQKKVARMAGYICSTMTQDVDILVVGEASSKKYIVASELGIKTV 170

Query: 710 NEEQFLF 716
               F+ 
Sbjct: 171 T-VDFIK 176


>gi|114567871|ref|YP_755025.1| DNA integrity scanning protein DisA [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338806|gb|ABI69654.1| putative nucleic-acid-binding protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 356

 Score = 40.2 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 7/50 (14%), Positives = 17/50 (34%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
             N  +    +          L  V  +G++ A++I    +  +    +E
Sbjct: 304 IDNLVERFGLLSNVLRASIEELDDVEGIGEVRARSIKNGLKRMQEQLLLE 353


>gi|333027927|ref|ZP_08455991.1| putative excinuclease ABC subunit C [Streptomyces sp. Tu6071]
 gi|332747779|gb|EGJ78220.1| putative excinuclease ABC subunit C [Streptomyces sp. Tu6071]
          Length = 907

 Score = 40.2 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/82 (12%), Positives = 25/82 (30%), Gaps = 10/82 (12%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                +  + +     R      +  +G    ++L K++ S +                 
Sbjct: 538 HRFAITYQRSKRAKRFRAGPLDEVPGLGQTRKQALLKHFGSVKKLRAAT----------I 587

Query: 596 LSLIRVPLVGDIIAQAIVEFYQ 617
             +  VP +G   A+ I+  + 
Sbjct: 588 EQICEVPGIGRKTAETILATFA 609


>gi|313241477|emb|CBY33728.1| unnamed protein product [Oikopleura dioica]
          Length = 1304

 Score = 40.2 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
           K + FT  + K  R   Q+ V ++   + + +++  DI++VG+    K   A +LG+K +
Sbjct: 112 KNVCFT-NVPKEDREALQKKVARMAGYICSTMTQDVDILVVGEASSKKYIVASELGIKTV 170

Query: 710 NEEQFLF 716
               F+ 
Sbjct: 171 T-VDFIK 176


>gi|241758482|ref|ZP_04756602.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Neisseria flavescens SK114]
 gi|241759377|ref|ZP_04757482.1| competence protein ComEA helix-hairpin-helix repeat region
           [Neisseria flavescens SK114]
 gi|241759559|ref|ZP_04757662.1| competence protein ComEA helix-hairpin-helix repeat region
           [Neisseria flavescens SK114]
 gi|241759963|ref|ZP_04758062.1| competence protein ComEA helix-hairpin-helix repeat region
           [Neisseria flavescens SK114]
 gi|241760174|ref|ZP_04758271.1| competence protein ComEA helix-hairpin-helix repeat region
           [Neisseria flavescens SK114]
 gi|241319371|gb|EER55829.1| competence protein ComEA helix-hairpin-helix repeat region
           [Neisseria flavescens SK114]
 gi|241319649|gb|EER56069.1| competence protein ComEA helix-hairpin-helix repeat region
           [Neisseria flavescens SK114]
 gi|241320116|gb|EER56477.1| competence protein ComEA helix-hairpin-helix repeat region
           [Neisseria flavescens SK114]
 gi|241320322|gb|EER56641.1| competence protein ComEA helix-hairpin-helix repeat region
           [Neisseria flavescens SK114]
 gi|241321385|gb|EER57526.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Neisseria flavescens SK114]
          Length = 100

 Score = 40.2 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 566 IARSLAKYY--LSYQNFAQE-INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           + ++L K +   ++           +  N      L  +P +G   A++IVE+ Q     
Sbjct: 1   MGKNLMKKFLFGAFAAVCAAFSLAAVNINTASSAELEALPGIGPAKAKSIVEYRQKNGAF 60

Query: 623 CAVEALLKEVSPSIGRHEK 641
            +VE L            K
Sbjct: 61  KSVEELKNVKGIGDAVLNK 79


>gi|123476045|ref|XP_001321197.1| Metallothionein family protein [Trichomonas vaginalis G3]
 gi|121904018|gb|EAY08974.1| Metallothionein family protein [Trichomonas vaginalis G3]
          Length = 308

 Score = 40.2 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/302 (7%), Positives = 50/302 (16%), Gaps = 25/302 (8%)

Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR 234
           +          +     + +K++  + +               N         + T   +
Sbjct: 18  QWFKCQCCPGCKCGSNCHCTKDNKCSPDCHCGEGCNCNEGCYCNEGCKCGSNCHCTKDNK 77

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
                  G G       K              P  +     N   G              
Sbjct: 78  CSPDCHCGEGCHCNEGCKCGSNCHCTKDNKCSPDCHCGEGCNCNEGCY--------CNEG 129

Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS---HKFAEKQASTRLLDIDIQIGRTGI 351
                +    K ++ S     GE              K       T+             
Sbjct: 130 CKCGSNCHCTKDNKCSPDCHCGEGCNCNEGCYCNEGCKCGSNCHCTKDNKC----SPDCH 185

Query: 352 LTPVARLEPVNIGGALITNAT---LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408
                        G+            + +        +        + G      +  +
Sbjct: 186 CGEGCHCNEGCKCGSNCHCTKDNKCSPDCHCGEGCNCNEGCYCNEGCKCGSNCHCTKDNK 245

Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468
             P            +    +   +C             K  K      C  G  C+   
Sbjct: 246 CSPDCHC-------GEGCNCNEGCYCNEGCKCGSNCHCTKDSKCSPDCHCGEGCNCNEGC 298

Query: 469 LE 470
             
Sbjct: 299 KC 300



 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/279 (7%), Positives = 42/279 (15%), Gaps = 25/279 (8%)

Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255
            +            +        +     +    +             G       K   
Sbjct: 9   CNKQNAGKSQWFKCQCCPGCKCGSNCHCTKDNKCSPDCHCGEGCNCNEGCYCNEGCKCGS 68

Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGI-VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314
                      P  +     +   G                P    G     +E     +
Sbjct: 69  NCHCTKDNKCSPDCHCGEGCHCNEGCKCGSNCHCTKDNKCSPDCHCGEGCNCNEGCYCNE 128

Query: 315 LGERARSPRWMISHKFAEKQASTRLLDI--DIQIGRTGILTPVARLEPVNIGGALITNAT 372
                         K       T+      D   G                 G+      
Sbjct: 129 ------------GCKCGSNCHCTKDNKCSPDCHCGEGCNCNEGCYCNEGCKCGSNCHCTK 176

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
              ++        G+        + G      +  +  P            +    +   
Sbjct: 177 ---DNKCSPDCHCGEGCHCNEGCKCGSNCHCTKDNKCSPDCHC-------GEGCNCNEGC 226

Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471
           +C             K  K      C  G  C+      
Sbjct: 227 YCNEGCKCGSNCHCTKDNKCSPDCHCGEGCNCNEGCYCN 265


>gi|75910493|ref|YP_324789.1| excinuclease ABC subunit C [Anabaena variabilis ATCC 29413]
 gi|119367626|sp|Q3M542|UVRC_ANAVT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|75704218|gb|ABA23894.1| Excinuclease ABC subunit C [Anabaena variabilis ATCC 29413]
          Length = 627

 Score = 40.2 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 10/62 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +G    + L  ++ S     Q               +  VP +G  +AQAI +++  
Sbjct: 575 IPGLGHHRQKQLLAHFRSVDYIRQATPA----------QIAEVPGIGPHLAQAIYDYFHP 624

Query: 619 PR 620
             
Sbjct: 625 SH 626


>gi|254451520|ref|ZP_05064957.1| helicase, RecD/TraA family [Octadecabacter antarcticus 238]
 gi|198265926|gb|EDY90196.1| helicase, RecD/TraA family [Octadecabacter antarcticus 238]
          Length = 679

 Score = 40.2 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 9/81 (11%)

Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604
                +E+++ S  IR +G   A+ L K +           ++      +   L  V  +
Sbjct: 35  SSLEGIEKYLGSGMIRGIGPVYAKRLVKKFG---------KDVFDLIEAEPERLREVEGI 85

Query: 605 GDIIAQAIVEFYQNPRNICAV 625
           G   A  I   + + + I  +
Sbjct: 86  GPKRADKITSAWADQKVIREI 106


>gi|317124808|ref|YP_004098920.1| excinuclease ABC subunit C [Intrasporangium calvum DSM 43043]
 gi|315588896|gb|ADU48193.1| Excinuclease ABC subunit C [Intrasporangium calvum DSM 43043]
          Length = 709

 Score = 40.2 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 10/83 (12%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                + +++R           G++ +GA   R+L K++ S +               + 
Sbjct: 620 HRFAITFHRQRRSKAMTASALDGVQGLGAARQRALLKHFGSVKRLRAA----------EP 669

Query: 596 LSLIRVPLVGDIIAQAIVEFYQN 618
            +++ VP +G  +A AIV     
Sbjct: 670 EAIMAVPGIGPALAAAIVAHLSE 692


>gi|291276652|ref|YP_003516424.1| Holliday junction DNA helicase [Helicobacter mustelae 12198]
 gi|290963846|emb|CBG39682.1| holliday junction DNA helicase [Helicobacter mustelae 12198]
          Length = 184

 Score = 40.2 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 17/93 (18%)

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV- 653
           + +LI++  VG  +A AI+  +     +  +E        +  +    V ++   K +V 
Sbjct: 71  FDTLIKINGVGPKVALAILSTFSAQEFMAVIER----KDIAALQKVPGVGTKSAGKIMVE 126

Query: 654 FTGT---L-------QKIQRHKAQEYVTQLGAV 676
            +G    L       +     +A+  +  LG  
Sbjct: 127 LSGAYVELLPKKDHTEHF--QQAEMALENLGYK 157


>gi|81428681|ref|YP_395681.1| putative type II secretion/competence system, protein ComEA-like
           [Lactobacillus sakei subsp. sakei 23K]
 gi|78610323|emb|CAI55372.1| Putative bacterial type II secretion/competence system, protein
           ComEA-like [Lactobacillus sakei subsp. sakei 23K]
          Length = 234

 Score = 40.2 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 19/59 (32%)

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
           I  N  D   L  +  +G   A+ I+ +         +E L K         E+  S  
Sbjct: 173 IDLNQADSTQLQTLNGIGPKKAEQIIAYRDEQGKFKQIEDLQKVGGIGPKTFEQLQSQI 231


>gi|300781129|ref|ZP_07090983.1| excision endonuclease subunit UvrC [Corynebacterium genitalium ATCC
           33030]
 gi|300532836|gb|EFK53897.1| excision endonuclease subunit UvrC [Corynebacterium genitalium ATCC
           33030]
          Length = 693

 Score = 40.2 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 13/113 (11%)

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
           P D   L   + +    +   +          Y    + + +         GI  +G   
Sbjct: 589 PDDDEPLILPRNSEGMYLLQQIRDEAHRFAITYHRQQRSKRMRASA---LDGIPGLGPAR 645

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
              L K++ S +                   +  VP +G  +A+ + +  +  
Sbjct: 646 RSDLVKHFGSVKKLKAA----------SAEEIEEVPGIGPKLAETVWQHLRKD 688


>gi|159043197|ref|YP_001531991.1| excinuclease ABC subunit C [Dinoroseobacter shibae DFL 12]
 gi|157910957|gb|ABV92390.1| excinuclease ABC [Dinoroseobacter shibae DFL 12]
          Length = 631

 Score = 40.2 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 10/85 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ +            +  VGA+  R+L  ++ S            A +  + 
Sbjct: 556 HRFAIGTHRAKRSKSVSRTPLDDVPGVGAKRKRALLAHFGS----------AKAVSRANL 605

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPR 620
             L  V  V   +AQ I +F+ + +
Sbjct: 606 SDLKAVEGVSATMAQTIYDFFHDQK 630


>gi|14591755|ref|NP_143722.1| Hef nuclease [Pyrococcus horikoshii OT3]
          Length = 748

 Score = 40.2 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 10/56 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
            + +V   +AR L +++ S +                   L++V  +G+ IA+ I 
Sbjct: 692 SLPNVSTTLARRLLRHFGSVEKVFTA----------SVPELMKVEGIGEKIAREIR 737


>gi|282599770|ref|ZP_05971815.2| conserved hypothetical protein [Providencia rustigianii DSM 4541]
 gi|282567766|gb|EFB73301.1| conserved hypothetical protein [Providencia rustigianii DSM 4541]
          Length = 168

 Score = 40.2 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEE 712
           FTG L+  +  K  E     G VV   ++    ++  G N    K++KA+++G+ I+NE 
Sbjct: 97  FTGFLKADK-EKLTELAADAGMVVRKSVTVHLKLLCYGYNASQMKMDKAREMGIIILNEN 155

Query: 713 QFLFLL 718
           QF   L
Sbjct: 156 QFREFL 161


>gi|311896823|dbj|BAJ29231.1| putative DNA integrity scanning protein [Kitasatospora setae
           KM-6054]
          Length = 368

 Score = 39.8 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +  +   +   L  ++   Q                   L  V  VG+  A+++ E    
Sbjct: 308 VPRLPNTVIERLVDHFGGLQKLLAA----------SIDDLQTVEGVGETRARSVREGLSR 357

Query: 619 PRNICAVEA 627
                 +E 
Sbjct: 358 LAESSILER 366


>gi|192361497|ref|YP_001982263.1| excinuclease ABC subunit C [Cellvibrio japonicus Ueda107]
 gi|190687662|gb|ACE85340.1| excinuclease ABC, C subunit [Cellvibrio japonicus Ueda107]
          Length = 612

 Score = 39.8 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 10/94 (10%)

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
           +++            + +K+R     R      I  VGA   R L +++   Q   +   
Sbjct: 529 HLIQHIRDESHRFAITGHKQRRDKKRRTSSLEDIPGVGATRRRELLRHFGGLQEVQKA-- 586

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
                     + L +VP +   +A+ I  F+ N 
Sbjct: 587 --------SVVELAKVPGISHKLAEEIYSFFHND 612


>gi|294102363|ref|YP_003554221.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Aminobacterium colombiense DSM 12261]
 gi|293617343|gb|ADE57497.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Aminobacterium colombiense DSM 12261]
          Length = 210

 Score = 39.8 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 25/66 (37%)

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635
           S QN        +  N      L  +P VG   A +IV + ++      +E LL+     
Sbjct: 136 SRQNSDSSAMKKVNINRASEEELQALPGVGPSTAGSIVRYRESQGLFNGIEDLLRVRGIG 195

Query: 636 IGRHEK 641
             + EK
Sbjct: 196 PAKFEK 201


>gi|203283953|ref|YP_002221693.1| Holliday junction DNA helicase [Borrelia duttonii Ly]
 gi|226698725|sp|B5RLN1|RUVA_BORDL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|201083396|gb|ACH92987.1| Holliday junction DNA helicase [Borrelia duttonii Ly]
          Length = 196

 Score = 39.8 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 4/83 (4%)

Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
           +  Y+    +  +    +     + +  LI V  +G   A  I+   +      A+    
Sbjct: 46  ILTYFHFRDDDVKLFGFLNISEREVFEDLIGVDGIGPKAALKILSGIKYDAFRLAIAK-- 103

Query: 630 KEVSPSIGRHEKNVSSEIENKKL 652
                ++    K + ++I  K  
Sbjct: 104 --EDINLISKVKGIGNKIAGKIF 124


>gi|187933408|ref|YP_001884449.1| DNA integrity scanning protein DisA [Clostridium botulinum B str.
           Eklund 17B]
 gi|226729438|sp|B2TIF1|DISA_CLOBB RecName: Full=DNA integrity scanning protein disA
 gi|187721561|gb|ACD22782.1| DNA integrity scanning protein DisA [Clostridium botulinum B str.
           Eklund 17B]
          Length = 354

 Score = 39.8 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 38/129 (29%), Gaps = 4/129 (3%)

Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562
            ++       L  R         N +      ++             L     SL    +
Sbjct: 224 LVKHIERDGILLIRDYCKDEDGHNEVYEQIQKLSATELLDLDAIARVLGHAGESLVDTLI 283

Query: 563 GAEIARSLAK--YYLS--YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
            A+  R L K     S   +N  +E   + +    D   L  V  +G+  A+AI +  + 
Sbjct: 284 SAKGYRILGKVPRIPSTVIENLIKEFKELNSVIEADIDELDIVEGIGEARAKAIKDGLKR 343

Query: 619 PRNICAVEA 627
            R    +  
Sbjct: 344 IREQILLNK 352


>gi|297582420|ref|YP_003698200.1| DNA integrity scanning, DisA, linker region [Bacillus
           selenitireducens MLS10]
 gi|297140877|gb|ADH97634.1| DNA integrity scanning, DisA, linker region [Bacillus
           selenitireducens MLS10]
          Length = 360

 Score = 39.8 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +  ++ R+L + + +     +           D   L  V  +G+  A  I +    
Sbjct: 300 IPRIPPKVIRNLVRQFGTLSEMIRA----------DIQELDEVEGIGEARANKIQDGLSR 349

Query: 619 PRNICAVEA 627
            +    ++ 
Sbjct: 350 IQEQLIIDR 358


>gi|7510359|pir||T27283 hypothetical protein Y64G10A.f - Caenorhabditis elegans
          Length = 1620

 Score = 39.8 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/358 (8%), Positives = 67/358 (18%), Gaps = 17/358 (4%)

Query: 157  GHSGEDVSACIRA----IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
            G  G D     +     I           P     + +   +   F     +        
Sbjct: 960  GRFGIDCMQLCKCQNGAICDTSNGSCECAPGWSGKKCDKACAPGTFGKDCSKKCDCADGM 1019

Query: 213  YANPRNAASGILRRLNPTDITRYLNFFVHGLGK----TSEIFAKGQYEMLQKMRCLGFPV 268
            + +P +                  +  + G G     + +  A             G+  
Sbjct: 1020 HCDPSDGECICPPGKKGHKCDETCDSGLFGAGCKGICSCQNGATCDSVTGSCECRPGWRG 1079

Query: 269  NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
                R                   +      +  V + D  + + +       P    S 
Sbjct: 1080 KKCDRPCPDGRFGEGCNAICDCTTTNDTSMYNPFVARCDHVTGECRCPAGWTGPDCQTSC 1139

Query: 329  KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH----NEDYIKGLDA 384
                +             G +          P    G    +        +      L  
Sbjct: 1140 -PLGRHGEGCRHSCQCSNGASCDRVTGFCDCPSGFMGKNCESECPEGLWGSNCMKHCLCM 1198

Query: 385  SGKVMRGGRD----IRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
             G            I       +   G+           +        +    C    S 
Sbjct: 1199 HGGECNKENGDCECIDGWTGPSLCPFGQFGRNCAQRCNCKNGASCDRKTGRCECLPGWSG 1258

Query: 441  VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
               + +  +G   A    T      A       H   +  +  +   +  L  +F   
Sbjct: 1259 EHCEKSCVSGHYGAKCEETCECENGALCDPISGHCSCQPGWRGKKCNRPCLKGYFGRH 1316


>gi|159905661|ref|YP_001549323.1| Hef nuclease [Methanococcus maripaludis C6]
 gi|159887154|gb|ABX02091.1| ERCC4 domain protein [Methanococcus maripaludis C6]
          Length = 751

 Score = 39.8 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           G+  VG  +A +L   + S +N                  L  V  VG I A+ I E
Sbjct: 697 GLPDVGPVMAENLLDNFNSVENIFTASE----------EELKSVDGVGPITAKKIKE 743


>gi|206901500|ref|YP_002250825.1| ComEA protein [Dictyoglomus thermophilum H-6-12]
 gi|206740603|gb|ACI19661.1| ComEA protein [Dictyoglomus thermophilum H-6-12]
          Length = 184

 Score = 39.8 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 21/58 (36%)

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
             N      L  +P +G  +AQ I+E+ +      + E LL        + EK     
Sbjct: 125 NINTASKEELESLPGIGPTLAQRIIEYREENGVFTSAEDLLNVKGIGEKKLEKIKDQI 182


>gi|171920237|ref|ZP_02690314.2| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 1 str. ATCC 27813]
 gi|171902634|gb|EDT48923.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 1 str. ATCC 27813]
          Length = 1442

 Score = 39.8 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 540  DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595
            +  +K R+   +     L ++ +   +   LA+ +     S +        I   NN   
Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQNNAII 1378

Query: 596  LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
               I +  +G+ +A +I+E  +N +    +E L  
Sbjct: 1379 PPFIAIQGLGETVANSIIEA-RNQKVFSTIEDLKN 1412


>gi|145322928|ref|NP_001030806.2| unknown protein [Arabidopsis thaliana]
 gi|49823530|gb|AAT68748.1| hypothetical protein At3g43930 [Arabidopsis thaliana]
 gi|332644325|gb|AEE77846.1| BRCT domain-containing DNA repair protein [Arabidopsis thaliana]
          Length = 444

 Score = 39.8 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 1/37 (2%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                        +  TG L K  R + +E   +LG 
Sbjct: 49  PPVRSDGPFSGLIICVTG-LSKEARKQVKEATERLGG 84


>gi|115446483|ref|NP_001047021.1| Os02g0530600 [Oryza sativa Japonica Group]
 gi|118573102|sp|Q0E0Q3|PARP3_ORYSJ RecName: Full=Poly [ADP-ribose] polymerase 3; Short=PARP-3;
           AltName: Full=NAD(+) ADP-ribosyltransferase 3;
           Short=ADPRT-3; AltName: Full=Poly[ADP-ribose] synthase 3
 gi|113536552|dbj|BAF08935.1| Os02g0530600 [Oryza sativa Japonica Group]
 gi|215734946|dbj|BAG95668.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218190884|gb|EEC73311.1| hypothetical protein OsI_07496 [Oryza sativa Indica Group]
 gi|222622987|gb|EEE57119.1| hypothetical protein OsJ_06997 [Oryza sativa Japonica Group]
          Length = 831

 Score = 39.8 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/94 (11%), Positives = 32/94 (34%), Gaps = 15/94 (15%)

Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH--KAQEYVTQLGAVVSAILSRKT 685
           L ++      +   +         +  +G   ++ R     +E + + G  V+  +    
Sbjct: 184 LKQQEGNKYPKRNLDDEGIFSGMMIALSG---RMSRSHGYFKEQIMKHGGKVNNSVIG-V 239

Query: 686 DIIIV-------GDNPGSKLEKAQQLGVKIMNEE 712
             ++        G + G    +A + G  +++E 
Sbjct: 240 TCVVASPAERHQGGSGG--FAEALERGTPVVSEN 271


>gi|295839538|ref|ZP_06826471.1| excinuclease ABC subunit C [Streptomyces sp. SPB74]
 gi|197696882|gb|EDY43815.1| excinuclease ABC subunit C [Streptomyces sp. SPB74]
          Length = 818

 Score = 39.8 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/82 (12%), Positives = 25/82 (30%), Gaps = 10/82 (12%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                +  + +     R      +  +G    ++L K++ S +                 
Sbjct: 538 HRFAITYQRSKRAKRFRAGPLDEVPGLGQSRKQALLKHFGSVKKLRAAT----------I 587

Query: 596 LSLIRVPLVGDIIAQAIVEFYQ 617
             +  VP +G   A+ I+  + 
Sbjct: 588 EQICEVPGIGRKTAETILATFA 609


>gi|49823528|gb|AAT68747.1| hypothetical protein At3g43930 [Arabidopsis thaliana]
          Length = 363

 Score = 39.8 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 1/37 (2%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                        +  TG L K  R + +E   +LG 
Sbjct: 49  PPVRSDGPFSGLIICVTG-LSKEARKQVKEATERLGG 84


>gi|254520207|ref|ZP_05132263.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Clostridium sp. 7_2_43FAA]
 gi|226913956|gb|EEH99157.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Clostridium sp. 7_2_43FAA]
          Length = 224

 Score = 39.8 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 24/64 (37%)

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
             + II  N      L ++  VG++ A++I+ + +      +++ +           EK 
Sbjct: 159 AEDGIININTASLEELQKINGVGEVKAKSIINYREKNGGFKSIDEMKNIEGIGDKTFEKM 218

Query: 643 VSSE 646
               
Sbjct: 219 KDQI 222


>gi|157413345|ref|YP_001484211.1| excinuclease ABC subunit C [Prochlorococcus marinus str. MIT 9215]
 gi|157387920|gb|ABV50625.1| Excinuclease ABC subunit C (UvrC) [Prochlorococcus marinus str. MIT
           9215]
          Length = 644

 Score = 39.8 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 10/103 (9%)

Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576
           +     K   +L            S ++ +            I  +G+   + L +Y+ S
Sbjct: 552 KTDMNQKGVMLLRRLRDEAHRFALSFHRNKRSKRMNRSQLTQIPGLGSSRIKDLLEYFKS 611

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
                                L++V  +G   A  I  F+ N 
Sbjct: 612 VDAIRIASK----------DELMKVKGLGANTANDIYNFFNND 644


>gi|302876559|ref|YP_003845192.1| DNA integrity scanning, DisA, linker region [Clostridium
           cellulovorans 743B]
 gi|307687231|ref|ZP_07629677.1| DNA integrity scanning protein DisA [Clostridium cellulovorans
           743B]
 gi|302579416|gb|ADL53428.1| DNA integrity scanning, DisA, linker region [Clostridium
           cellulovorans 743B]
          Length = 357

 Score = 39.8 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 17/50 (34%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
             N     +N           L +V  +G+  A+AI    +  R    ++
Sbjct: 305 INNLVNSFDNFQEILKASIEDLDKVEGIGEARAKAIKNGLRRLREQSMLD 354


>gi|295670675|ref|XP_002795885.1| subunit of DNA polymerase II [Paracoccidioides brasiliensis Pb01]
 gi|226284970|gb|EEH40536.1| subunit of DNA polymerase II [Paracoccidioides brasiliensis Pb01]
          Length = 822

 Score = 39.8 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 3/95 (3%)

Query: 628 LLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKT 685
            +    P++   E+           +  TG  + +  R+  Q  +T+ G      L++  
Sbjct: 61  WMLGGDPNLEELEEQYRYPTFAGLSICLTG-FEDMNTRNHLQRTITENGGEFRRDLTKSV 119

Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720
             +I     G K + A    + +++ +     L++
Sbjct: 120 THLIARSGCGQKYKYATLWKITVVSLKWLQDSLER 154


>gi|297818848|ref|XP_002877307.1| hypothetical protein ARALYDRAFT_484825 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323145|gb|EFH53566.1| hypothetical protein ARALYDRAFT_484825 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 494

 Score = 39.8 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 1/38 (2%)

Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           +             +  TG L K  R + +E   +LG 
Sbjct: 47  QPPVRSDGPFSGLIICVTG-LSKEARKQVKEATERLGG 83


>gi|189242004|ref|XP_001807057.1| PREDICTED: hypothetical protein, partial [Tribolium castaneum]
          Length = 765

 Score = 39.8 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/384 (7%), Positives = 64/384 (16%), Gaps = 23/384 (5%)

Query: 158 HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN----DEMIAVGRKPY 213
            SG+D         +                        +F          +    ++ Y
Sbjct: 37  DSGDDWYRINFDFGSFNFWKWDGFDSRYNWY------WINFNWNWYWFNSWLNWQRKRFY 90

Query: 214 ANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273
           +    +        N      Y  +  +G+      F   ++          +   N  R
Sbjct: 91  SWFDRSWKRFYTGYNWKWYWFYARYNWNGVNFDFWSFNFRKWYWFYSGYNWYWVNLNLWR 150

Query: 274 QANTFHGIV--SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331
                       Y               +   Y  +       +     S  +   + F 
Sbjct: 151 FDFWKGYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNTGYNWNWVNFNFWSFNFRKWYWFY 210

Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391
            +     +     +          +  +   I      N    N        +       
Sbjct: 211 SRYNWYWVNFNLWRFDFWKRYWFNSWYDWNWI----NFNFWSFNFRKWYWFYSGYNWYWV 266

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
             ++   D    +               +R      + +  F        V         
Sbjct: 267 NLNLWRFD-FWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNTRYNWNWVNFDFWSFNF 325

Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511
                  +G              F  R             D+ +      F  R     +
Sbjct: 326 RKWYWFYSGYNWYWVNLNLWRFDFWKR------YWFNSWYDWNWYRNWDRFHSRYNWKWY 379

Query: 512 TLQRRQQTSTTKIENILGFGDVSV 535
                   +               
Sbjct: 380 GFNTGYNWNWVNFNFWSFNFRKWY 403


>gi|119483248|ref|ZP_01618662.1| Excinuclease ABC, C subunit [Lyngbya sp. PCC 8106]
 gi|119458015|gb|EAW39137.1| Excinuclease ABC, C subunit [Lyngbya sp. PCC 8106]
          Length = 649

 Score = 39.8 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 10/92 (10%)

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
            +L            S ++++     +      I  +G    + L  ++ S         
Sbjct: 557 QLLRRLRDEAHRFAVSFHRQKRSQRLKRSRLDEIPGLGYRRQKQLLAHFRSIDYLRIATP 616

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                       +  VP +G  +AQ I  ++ 
Sbjct: 617 ----------EQITEVPGIGFKLAQHIYNYFH 638


>gi|170103374|ref|XP_001882902.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164642273|gb|EDR06530.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1624

 Score = 39.8 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 657 TLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
           T+       R   ++ +T +GA  +  ++ K  ++I     G+K  KA    + ++N
Sbjct: 382 TVTNYTGEAREYLKKLITAMGATFTPSMTGKNTVLIAAFLTGTKATKALSWSIPVVN 438


>gi|300811641|ref|ZP_07092117.1| tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
           protein [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|313124105|ref|YP_004034364.1| methylenetetrahydrofolate dehydrogenase
           (nadp+)/methenyltetrahydrofolate cyclohydrolase
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|300497342|gb|EFK32388.1| tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
           protein [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|312280668|gb|ADQ61387.1| Methylenetetrahydrofolate dehydrogenase
           (NADP+)/methenyltetrahydrofolate cyclohydrolase
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 283

 Score = 39.8 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 20/77 (25%)

Query: 671 TQLGAVVSA----ILSRKTDIII-VGDNPGSKL------EKAQQLGVKIM--------NE 711
            +LG+ V++     +S K   +I +GD+P SK+       KA++LG+K +        +E
Sbjct: 16  EKLGSEVASLKEHGVSPKL-CVINIGDDPASKVYVASKKRKAEKLGIKQVVYQLPADESE 74

Query: 712 EQFLFLLQQYNTTLRIH 728
           E  L L+   N    + 
Sbjct: 75  EDVLKLIDSLNADPEVS 91


>gi|154484305|ref|ZP_02026753.1| hypothetical protein EUBVEN_02018 [Eubacterium ventriosum ATCC
           27560]
 gi|149734782|gb|EDM50699.1| hypothetical protein EUBVEN_02018 [Eubacterium ventriosum ATCC
           27560]
          Length = 633

 Score = 39.8 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/131 (10%), Positives = 33/131 (25%), Gaps = 15/131 (11%)

Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF-----GDVSVTNLYDSINKRR 546
           D           ++                   +N  GF                 ++  
Sbjct: 513 DSLNLHIPVCGMVKDDNHRTRGLYYNNEEIPIAKNSEGFRLITRMQDETHRFAIEYHRSL 572

Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606
               +       I  VG    ++L + + S +   +               L +V  + +
Sbjct: 573 RNKKQVHSILDDISGVGPARRKALMREFKSIEGIREAT----------VEQLSQVDTISE 622

Query: 607 IIAQAIVEFYQ 617
            +A+ I +F+ 
Sbjct: 623 KVAKDIYKFFH 633


>gi|111225864|ref|YP_716658.1| DNA integrity scanning protein DisA [Frankia alni ACN14a]
 gi|123337921|sp|Q0RBN2|DISA_FRAAA RecName: Full=DNA integrity scanning protein disA
 gi|111153396|emb|CAJ65152.1| nucleic-acid-binding protein protein, containing HHH domain
           [Frankia alni ACN14a]
          Length = 359

 Score = 39.8 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 10/82 (12%)

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R IS   +     +  +   +   L  ++ + Q                   L  V  VG
Sbjct: 286 RQISPRGYRMLAKVPRLPRMVVDRLVDHFGTLQKLLAA----------GVDDLQAVDGVG 335

Query: 606 DIIAQAIVEFYQNPRNICAVEA 627
           +  A+A+ E          +E 
Sbjct: 336 ETRARAVREGLSRLAESSILER 357


>gi|86742934|ref|YP_483334.1| DNA integrity scanning protein DisA [Frankia sp. CcI3]
 gi|119365932|sp|Q2J537|DISA_FRASC RecName: Full=DNA integrity scanning protein disA
 gi|86569796|gb|ABD13605.1| protein of unknown function DUF147 [Frankia sp. CcI3]
          Length = 359

 Score = 39.8 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 10/82 (12%)

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R IS   +     +  +   +   L  ++ + Q                   L  V  VG
Sbjct: 286 RQISPRGYRMLAKVPRLPRMVVDRLVDHFGTLQKLLAA----------GVDDLQAVDGVG 335

Query: 606 DIIAQAIVEFYQNPRNICAVEA 627
           +  A+A+ E          +E 
Sbjct: 336 ETRARAVREGLSRLAESSILER 357


>gi|18375967|emb|CAD21266.1| related to NAD+ ADP-ribosyltransferase [Neurospora crassa]
          Length = 661

 Score = 39.8 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 42/97 (43%), Gaps = 21/97 (21%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA-----ILS------RKTDIIIVGDNP 694
            +E+ ++VF+GT     + + ++    LGA  +       ++      + TD        
Sbjct: 17  PLEDCRIVFSGTFVG-GQDQHKKTAESLGANTTGTTIVQSVTHVIYSDKSTD------KI 69

Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731
            +K+++A  + + +++ +    LL+   T  R  + D
Sbjct: 70  SAKVKQAHGMSIPVVSIDW---LLKTKETNTRHPEKD 103


>gi|270009278|gb|EFA05726.1| hypothetical protein TcasGA2_TC015410 [Tribolium castaneum]
          Length = 1310

 Score = 39.8 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 657  TLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            TL       R++ +  +   GA  ++  S+   ++I     G+K   A++ G+ ++N
Sbjct: 952  TLSGFTGCERNRVKHMINYTGAKFTSYFSKHNTLLIAAKGEGAKYNHAKKWGIPVVN 1008


>gi|189238097|ref|XP_001813810.1| PREDICTED: similar to conserved hypothetical protein [Tribolium
            castaneum]
          Length = 1341

 Score = 39.8 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 657  TLQKIQ---RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
            TL       R++ +  +   GA  ++  S+   ++I     G+K   A++ G+ ++N
Sbjct: 967  TLSGFTGCERNRVKHMINYTGAKFTSYFSKHNTLLIAAKGEGAKYNHAKKWGIPVVN 1023


>gi|328710855|ref|XP_001946764.2| PREDICTED: DNA topoisomerase 2-binding protein 1-B-like
           [Acyrthosiphon pisum]
          Length = 1285

 Score = 39.8 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 651 KLVFTGTLQKIQRHK---AQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGV 706
            +V   ++  +   +    +E V  +G + S  L   T  ++VG   GS K  KA + G+
Sbjct: 117 NIVL--SISNLSPKEKERVKEKVEYMGGIFSHNLRDSTTHLMVG-KAGSQKHIKAIENGI 173

Query: 707 KIMNEE 712
            IM E+
Sbjct: 174 NIMTEK 179


>gi|310815055|ref|YP_003963019.1| excinuclease ABC, C subunit [Ketogulonicigenium vulgare Y25]
 gi|308753790|gb|ADO41719.1| excinuclease ABC, C subunit [Ketogulonicigenium vulgare Y25]
          Length = 618

 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 10/87 (11%)

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
               V       ++ +            +  VG    R+L +++ S              
Sbjct: 539 MRDEVHRFAIGTHRAKRSKAFTTNALDELPGVGPARKRALLQHFGS----------AKDV 588

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           +N     L  VP + D +A+ I  ++ 
Sbjct: 589 SNAHLEDLKAVPGISDAMAEKIYNYFH 615


>gi|222100489|ref|YP_002535057.1| ComEA protein-related protein [Thermotoga neapolitana DSM 4359]
 gi|221572879|gb|ACM23691.1| ComEA protein-related protein [Thermotoga neapolitana DSM 4359]
          Length = 181

 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%)

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
           I  N+     L+ +P +G + AQ IVE+ +       VE L           EK   
Sbjct: 47  IDLNSASVEDLMSIPGIGPVKAQRIVEYRRIRGKFSTVEELTNVSGIGEKTLEKISK 103


>gi|163750735|ref|ZP_02157971.1| atp-dependent rna helicase, eif-4a family protein [Shewanella
           benthica KT99]
 gi|161329579|gb|EDQ00571.1| atp-dependent rna helicase, eif-4a family protein [Shewanella
           benthica KT99]
          Length = 212

 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 17/177 (9%)

Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501
              +  KT   +    C G L     +L    H     A  IEG  +    +    E   
Sbjct: 45  NWLIERKTLPDLVISLCDGRLFSQVARLSACDH---NTALLIEGSSRDIASYDITREALI 101

Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR----RNISLERFIFSL 557
            ++   +  F +   +  S  +   IL F    + +    +       +     +     
Sbjct: 102 GALCSISIKFNMPILRSLSQAESAKILYFVAKQLHSRETELKLNGRKPKRKKNRQLFILQ 161

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +  VG ++A+ L  ++ + +                   L +V  +G   AQ I +
Sbjct: 162 SLPQVGPKLAKRLLSHFDNIEAIFTAPAA----------ELRKVEGIGQEKAQKIRD 208


>gi|145552529|ref|XP_001461940.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429777|emb|CAK94567.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2023

 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/323 (8%), Positives = 64/323 (19%), Gaps = 41/323 (12%)

Query: 155  GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214
            G G SG +      ++   P +             +  + K +            +    
Sbjct: 912  GYGQSGLN--GNYCSMCQYPCLECSINVNTCTKCIDSSLFKLE-NNQCLCQEGYYKDENQ 968

Query: 215  NPRNA--ASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
              R A       +  +     + + F                Y           P N+  
Sbjct: 969  CLRCAPQCKSCEQFQDYCLACKDVTFIQIN------NQCFCDYGYFLNSAFQCKPCNSPC 1022

Query: 273  RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332
                  +   +   +            +  V +   +    +                  
Sbjct: 1023 TTCQYNNNFCTSCIK-----EYQYLINNTCVCQDGYYMQNYEC----------------S 1061

Query: 333  KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392
                T        I    +       +            T  + D          +++  
Sbjct: 1062 LCYYTCTKCFSFNICNACVDGYYLNNDICTQCDTQC--LTCIDHDECLACSDGYYMVQTH 1119

Query: 393  RDIRVGDRVLV--KRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450
            +         +   +  +     +         D Q       C  C     + L+    
Sbjct: 1120 K-----CTSCISNCKECDNSYTCITCFDGYFLYDEQCVKCDDNCHTCVDEYQKCLSCNDN 1174

Query: 451  KLVAAHRCTGGLACSAQQLERLK 473
             L+  ++C        Q  E LK
Sbjct: 1175 FLLIDNKCICQEGYYYQNYECLK 1197


>gi|46111691|ref|XP_382903.1| hypothetical protein FG02727.1 [Gibberella zeae PH-1]
          Length = 866

 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 17/78 (21%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV----- 706
           +  TG   +  R +  + +T  G V +  L++K   +IV    G K   A+   +     
Sbjct: 152 ICLTGFGDQ--RGEIAKKITSNGGVFTGDLTKKCTHLIVHKPEGRKYAAARSWNIYPVTL 209

Query: 707 ----------KIMNEEQF 714
                      I++E +F
Sbjct: 210 AWLDQSIARGMILDESKF 227


>gi|327438614|dbj|BAK14979.1| dehydrogenase with different specificities [Solibacillus silvestris
           StLB046]
          Length = 240

 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679
            +  ENK +V TGT   I R +A  ++T+ GA V  
Sbjct: 2   GNRFENKVVVITGTASGIGRAQAAAFLTE-GATVVG 36


>gi|269794026|ref|YP_003313481.1| nucleic-acid-binding protein [Sanguibacter keddieii DSM 10542]
 gi|269096211|gb|ACZ20647.1| predicted nucleic-acid-binding protein (contains the HHH domain)
           [Sanguibacter keddieii DSM 10542]
          Length = 361

 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +  + + I   L  ++   Q                   L+ V  VG+  A+++ E    
Sbjct: 301 VPRLPSTIVARLVSHFGGLQKLLAAT----------VEDLMAVDGVGEQRARSVREGLSR 350

Query: 619 PRNICAVEA 627
                 +E 
Sbjct: 351 LAESSILER 359


>gi|124027340|ref|YP_001012660.1| ERCC4-type nuclease [Hyperthermus butylicus DSM 5456]
 gi|123978034|gb|ABM80315.1| ERCC4-type nuclease [Hyperthermus butylicus DSM 5456]
          Length = 243

 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 10/80 (12%)

Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
             +++ +SL   I  +    VG  +AR L + + + +  A                L+ V
Sbjct: 165 RVEKKPMSLAERILYVAEGLVGPTLARRLLERFGTLRRIANA----------SVQELMSV 214

Query: 602 PLVGDIIAQAIVEFYQNPRN 621
             +G+  A+ I   +    N
Sbjct: 215 RGIGEKRAREIYLIFNTEWN 234


>gi|302338232|ref|YP_003803438.1| HhH-GPD family protein [Spirochaeta smaragdinae DSM 11293]
 gi|301635417|gb|ADK80844.1| HhH-GPD family protein [Spirochaeta smaragdinae DSM 11293]
          Length = 240

 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 5/74 (6%)

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
              +    +  LE  I S G     A   ++LA+++            + A +      L
Sbjct: 84  MQRLLALSDERLEALIRSSGYYRQKARKLKTLARFF-----LENGYGEVSAASTPSREEL 138

Query: 599 IRVPLVGDIIAQAI 612
           + +  +G+  A +I
Sbjct: 139 LSLWGIGEETADSI 152


>gi|291613471|ref|YP_003523628.1| hypothetical protein Slit_1003 [Sideroxydans lithotrophicus ES-1]
 gi|291583583|gb|ADE11241.1| conserved hypothetical protein [Sideroxydans lithotrophicus ES-1]
          Length = 143

 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 25/74 (33%)

Query: 5  QLIPIEALSIEQARKELSSLEQEISY-HDDCY----YQYSKPIILDSEYDALKRRCDAIA 59
          + +P+EAL+ ++  + + +L+  +   HD  Y    Y                       
Sbjct: 45 EELPVEALNGDELARRIDALDALLRRDHDYSYCGIVYADDA------------------- 85

Query: 60 HAFPDLARSEDPNG 73
             P L +  DPN 
Sbjct: 86 -EHPTLIKVYDPNN 98


>gi|302910096|ref|XP_003050216.1| hypothetical protein NECHADRAFT_49036 [Nectria haematococca mpVI
           77-13-4]
 gi|256731153|gb|EEU44503.1| hypothetical protein NECHADRAFT_49036 [Nectria haematococca mpVI
           77-13-4]
          Length = 728

 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 647 IENKKLVFTGTLQKI--QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---NPG-SKLE- 699
           ++   +  +G    I       +  + + G  V+  +++ T  ++  +   N G +K+  
Sbjct: 17  LDGCAIALSGKFDDIDHNHSSLETVIRKHGGTVTRSVTKATTHVVCTEYDFNAGTTKITA 76

Query: 700 -KAQQL 704
            KA+ L
Sbjct: 77  AKAKDL 82


>gi|304316608|ref|YP_003851753.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778110|gb|ADL68669.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 205

 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRH 639
           ++ +  I  N      L  +P +G++ AQ I++F +   N   +E ++    + P +   
Sbjct: 138 EKADGKININKATKEELDTLPGIGEVTAQRIIDFREQHGNFQKIEDIMNVSRIGPKLFEQ 197

Query: 640 EKNV 643
            K+ 
Sbjct: 198 IKDK 201


>gi|330959841|gb|EGH60101.1| putative DNA-binding protein [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 233

 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 10/56 (17%)

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            G   AR L  ++ S          +   NN     L  V  +G   AQAI E   
Sbjct: 162 CGPVAARKLLNHFRS----------VFRVNNASIDELCAVKGIGPKKAQAIFEGIH 207


>gi|167755868|ref|ZP_02427995.1| hypothetical protein CLORAM_01385 [Clostridium ramosum DSM 1402]
 gi|237734836|ref|ZP_04565317.1| predicted protein [Mollicutes bacterium D7]
 gi|167704807|gb|EDS19386.1| hypothetical protein CLORAM_01385 [Clostridium ramosum DSM 1402]
 gi|229382164|gb|EEO32255.1| predicted protein [Coprobacillus sp. D7]
          Length = 166

 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
            N+I+ N+     L+ +  +G   A  I+++ +N      +E + +
Sbjct: 104 KNLISLNHASKEQLMTIKGIGPKTADKIIDY-RNEHPFATIEEIKE 148


>gi|146344019|ref|YP_001201875.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
 gi|146187831|emb|CAM96160.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
          Length = 233

 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 10/56 (17%)

Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            G   AR L  ++ S          +   NN     L  V  +G   AQAI E   
Sbjct: 162 CGPVAARKLLNHFRS----------VFRVNNASIDELCAVKGIGPKKAQAIFEGIH 207


>gi|119928872|ref|XP_001251336.1| PREDICTED: ADAM metallopeptidase domain 21 [Bos taurus]
 gi|297477624|ref|XP_002689507.1| PREDICTED: ADAM metallopeptidase domain 21 preproprotein-like [Bos
           taurus]
 gi|296484966|gb|DAA27081.1| ADAM metallopeptidase domain 21 preproprotein-like [Bos taurus]
          Length = 726

 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 43/399 (10%), Positives = 82/399 (20%), Gaps = 29/399 (7%)

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEV------RGEVYISKNDFLALNDEMIAVGRKP 212
              ++   +            +   I+        R       + +  +           
Sbjct: 339 VSHEIGHNLGMRHDDKTCECGSRKCIMFPSKTVATRFSNCSYASYWNVVGKVRCMHISPN 398

Query: 213 YAN-PRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML----QKMRCLGFP 267
             N  R    G        +      +                            C   P
Sbjct: 399 PENIFRQTRCGNSVLEEGEECDCGSTYTCAKDPCCQSDCTLRVGATCAFGLCCENCTFMP 458

Query: 268 VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327
             +  R+      +  + N          Y  DG       +  +K+  +R       I 
Sbjct: 459 SGSMCRKEENECDLPEWCNGTSYQCPEDVYMQDGTSCTGGGYCYEKRCNDRNEQ-CRKIF 517

Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVAR-LEPVNIGGALITNATLHNEDYIKGLDASG 386
            K A+        +++++  R G     A       I   L       N   I  L    
Sbjct: 518 GKEAKNANENCYKEVNMRGDRFGNCGLTASSYIQCGIPDILCGRVQCENVTEIPLLRDHS 577

Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446
            V     +  V         G  IP + ++        A        C    S       
Sbjct: 578 TVHWTRIN-GVSCWGTDYHLGMTIPDIGEVKDGTECG-ANHICIERKCTFMPSF------ 629

Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
                      C+             +H      +N     ++       S  P     +
Sbjct: 630 --------ESGCSPETCNMNGVCNNREHCHCNSEWNPPHCQEKGAGGSVDSGPPPGRDDV 681

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
               + L  R       +  +L +    +  L     K 
Sbjct: 682 QDHHYLLLFRLIPLFFMLFCLLMWLFKKLKELIGQEEKS 720


>gi|323701816|ref|ZP_08113486.1| uroporphyrin-III C-methyltransferase [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533120|gb|EGB22989.1| uroporphyrin-III C-methyltransferase [Desulfotomaculum nigrificans
           DSM 574]
          Length = 510

 Score = 39.8 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 17/72 (23%)

Query: 609 AQAIVEFYQNPRNICA--VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666
           A+AI   ++NP  I    V  L  +++    +        +  K++V T       R +A
Sbjct: 219 AKAIRAQFKNPAIIIVGEVVKLRDKLAWFEKK-------PLFGKRVVVT-----RSREQA 266

Query: 667 ---QEYVTQLGA 675
                 +  LG 
Sbjct: 267 SVLSAAIEALGG 278


>gi|262276854|ref|ZP_06054647.1| excinuclease ABC subunit C [alpha proteobacterium HIMB114]
 gi|262223957|gb|EEY74416.1| excinuclease ABC subunit C [alpha proteobacterium HIMB114]
          Length = 612

 Score = 39.8 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/87 (11%), Positives = 29/87 (33%), Gaps = 10/87 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                + ++++            I  +G++  ++L  ++ S            A      
Sbjct: 535 HRFAITTHRKKKTKQMFKSPLDEIDGIGSKRKKALLSHFGS----------AKAIEGASL 584

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNI 622
             +  +  + D  A+ +  F+   +NI
Sbjct: 585 DDIKSIDGINDSSAEKVYNFFHKKKNI 611


>gi|116753548|ref|YP_842666.1| Hef nuclease [Methanosaeta thermophila PT]
 gi|116664999|gb|ABK14026.1| DEAD/DEAH box helicase domain protein [Methanosaeta thermophila PT]
          Length = 749

 Score = 39.8 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 10/75 (13%)

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
                 R +  ++      +  VG  +AR+L +++ S +                   L+
Sbjct: 677 HGRKTSRTLKEQQEYLISALPGVGPSVARNLLRHFGSVERIMTASEG----------ELM 726

Query: 600 RVPLVGDIIAQAIVE 614
            V  VG   A  I E
Sbjct: 727 SVDKVGPKTAARIRE 741


>gi|157964607|ref|YP_001499431.1| transposase [Rickettsia massiliae MTU5]
 gi|157844383|gb|ABV84884.1| Transposase and inactivated derivative [Rickettsia massiliae MTU5]
          Length = 316

 Score = 39.8 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 53/205 (25%), Gaps = 11/205 (5%)

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKH-----FVSRDAFNIEGLGKQQLDFFFKSED 499
              K  + + AH C     C   +L +  +         +   I+G    QL      + 
Sbjct: 42  EWLKGKEALTAHVCMEATGCYGTKLAQYLYDNNFKVSVVNPARIKGFSMSQLSRVKTDKA 101

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               I            QQ      +       +            R   ++  I +   
Sbjct: 102 DCQLIAQFCQAMQPDLWQQKPIHIQKLQQWVNRLDTLITNKLQESNRLGDIDPEIAADIQ 161

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
            H+       + +     +    +        ND    L  +P +G+     ++ F    
Sbjct: 162 FHIDF-----INERIKEVEKLIADHITQHEDLNDKRQLLASIPGIGEKTIAVVLAFLSVE 216

Query: 620 RNICAVEALLKEVSPSIGRHEKNVS 644
            N  + + +   V  +    +   S
Sbjct: 217 -NFDSAKQVAAFVGLNPKPKQSGSS 240


>gi|328715848|ref|XP_001946726.2| PREDICTED: hypothetical protein LOC100169397 [Acyrthosiphon pisum]
          Length = 951

 Score = 39.8 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 40/126 (31%), Gaps = 15/126 (11%)

Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585
            +      +                + ++F   + +      +   K + S       I 
Sbjct: 682 PMEAEAQCAFLEKIGRTEGTVTDDSDVWLFGANVVYKDFFDNQKYVKQFKSID-----IK 736

Query: 586 NIIAHNNDDWLSLI---------RVPLVGDIIAQAIVEFYQNP-RNICAVEALLKEVSPS 635
              A + + ++ L           +  +G + A  I+ F+++  +N+   E LLK    +
Sbjct: 737 QQFALSRNSFIQLAFLVGSDYTNGIDGIGPVSAIEILSFFESKTKNMNIEEKLLKIKEIA 796

Query: 636 IGRHEK 641
             + E 
Sbjct: 797 NSKAEV 802


>gi|326434034|gb|EGD79604.1| poly polymerase [Salpingoeca sp. ATCC 50818]
          Length = 1442

 Score = 39.8 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 12/90 (13%)

Query: 633 SPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
            PS    E +V  + E+        G L  I R + +  +T  G  V + L RK   +IV
Sbjct: 38  VPSEDEDEDDVPPNMELMGMTFKLIGALA-IPRKEFEGVITAHGGAVVSSL-RKCTHVIV 95

Query: 691 G----DNPGSK----LEKAQQLGVKIMNEE 712
           G    + P  K    L++A   GV +M EE
Sbjct: 96  GQRELNKPQDKHPQALKEALSSGVAVMREE 125


>gi|225459661|ref|XP_002284611.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 986

 Score = 39.8 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
                 +  T  +   +R + +  + Q G   SA L+R    +I
Sbjct: 184 PFSGLTICVT-KIPADERKEMEILIKQNGGKYSADLTRNCTHLI 226


>gi|307155174|ref|YP_003890558.1| excinuclease ABC subunit C [Cyanothece sp. PCC 7822]
 gi|306985402|gb|ADN17283.1| excinuclease ABC, C subunit [Cyanothece sp. PCC 7822]
          Length = 631

 Score = 39.8 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 16/90 (17%)

Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
                    +    I   R   L+  I  LG         + L  ++ S     Q     
Sbjct: 556 EAHRFAVSFHRQQRITHSRRSRLDE-IPGLGFGRQ-----KQLLAHFHSVDYIRQAT--- 606

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                     L+ V  +G+ +AQ I  ++ 
Sbjct: 607 -------VSQLMEVSGIGEQLAQEIYNYFH 629


>gi|309811791|ref|ZP_07705565.1| excinuclease ABC, C subunit [Dermacoccus sp. Ellin185]
 gi|308434212|gb|EFP58070.1| excinuclease ABC, C subunit [Dermacoccus sp. Ellin185]
          Length = 667

 Score = 39.8 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/142 (11%), Positives = 43/142 (30%), Gaps = 13/142 (9%)

Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ---TSTTKIENILGFGDVSVTNL 538
            ++   +   D  F         +   +++ +          T++   +L          
Sbjct: 522 QVDAAARALADVGFDDIPVVGLAKRLEEVWLVDDDYPVILPRTSEALYLLQRVRDEAHRF 581

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598
             + ++ R           GI  +G    ++L  ++ S +               D  +L
Sbjct: 582 AITFHRERRSKSMTTSALDGIAGLGPAKQKALLAHFGSLKRIRAA----------DADAL 631

Query: 599 IRVPLVGDIIAQAIVEFYQNPR 620
             V  +G  +A+ IV   +  +
Sbjct: 632 CEVKGIGPTLAETIVRSLRQEQ 653


>gi|332706583|ref|ZP_08426644.1| hypothetical protein LYNGBM3L_22440 [Lyngbya majuscula 3L]
 gi|332354467|gb|EGJ33946.1| hypothetical protein LYNGBM3L_22440 [Lyngbya majuscula 3L]
          Length = 360

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 11/51 (21%)

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK-LEK-----AQQLGVKIMN 710
           A+  +  +G  V++ +S K      G    SK   K     A +LG  I++
Sbjct: 249 AKPILVSMGGKVASKVSSKL----AG-KAASKMAAKTGGLVATELGASIID 294


>gi|325091085|gb|EGC44395.1| BRCT domain-containing protein [Ajellomyces capsulatus H88]
          Length = 921

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 646 EIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
                 +  TG    +  R+  Q+ +T+ GA     L++    +I     G K + A   
Sbjct: 147 TFAGLSICLTG-FDDMNHRNSLQKLITENGAEFRRDLTKSVTHLIARSGYGQKYKYATLW 205

Query: 705 GVKIMNEEQFLFLLQQ 720
            + +++ +     L++
Sbjct: 206 KITVVSLKWLQDSLER 221


>gi|320546389|ref|ZP_08040704.1| competence protein CelA [Streptococcus equinus ATCC 9812]
 gi|320448774|gb|EFW89502.1| competence protein CelA [Streptococcus equinus ATCC 9812]
          Length = 226

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 20/63 (31%)

Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638
                 +  I  N      L  +  +G   AQ I+++  N     +V+ L          
Sbjct: 156 ALQDADSAQINLNTASLEELQTISGIGAKRAQDIIDYRDNNGGFSSVDDLKNVSGIGEKT 215

Query: 639 HEK 641
            EK
Sbjct: 216 LEK 218


>gi|240275250|gb|EER38764.1| BRCT domain-containing protein [Ajellomyces capsulatus H143]
          Length = 891

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 646 EIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
                 +  TG    +  R+  Q+ +T+ GA     L++    +I     G K + A   
Sbjct: 117 TFAGLSICLTG-FDDMNHRNSLQKLITENGAEFRRDLTKSVTHLIARSGYGQKYKYATLW 175

Query: 705 GVKIMNEEQFLFLLQQ 720
            + +++ +     L++
Sbjct: 176 KITVVSLKWLQDSLER 191


>gi|225561645|gb|EEH09925.1| BRCT domain-containing protein [Ajellomyces capsulatus G186AR]
          Length = 891

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 646 EIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
                 +  TG    +  R+  Q+ +T+ GA     L++    +I     G K + A   
Sbjct: 117 TFAGLSICLTG-FDDMNHRNSLQKLITENGAEFRRDLTKSVTHLIARSGYGQKYKYATLW 175

Query: 705 GVKIMNEEQFLFLLQQ 720
            + +++ +     L++
Sbjct: 176 KITVVSLKWLQDSLER 191


>gi|170092201|ref|XP_001877322.1| hypothetical protein LACBIDRAFT_313586 [Laccaria bicolor S238N-H82]
 gi|164647181|gb|EDR11425.1| hypothetical protein LACBIDRAFT_313586 [Laccaria bicolor S238N-H82]
          Length = 319

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 19/129 (14%)

Query: 10  EALSIEQARKELSSLEQEI---SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL- 65
             ++ +  R E++ L  E+    ++   YY  +  +        L  R          L 
Sbjct: 171 SRMAEDALRAEINELTTELTEAQHYQQAYYALADEVGS------LLARNQIAEEEATTLS 224

Query: 66  ---ARSEDPNGPLNKIGG--EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120
              A+    N P  +I     +   L +  H+I  L      + + L      +      
Sbjct: 225 KFNAQILGHNNPAQRIMYIDRIRTELAEAKHNIAML----TRDQDALAAENENLQNELDM 280

Query: 121 KDDNSIFFT 129
               ++  T
Sbjct: 281 YKSVTVPIT 289


>gi|154283039|ref|XP_001542315.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150410495|gb|EDN05883.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 874

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 646 EIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
                 +  TG    +  R+  Q+ +T+ GA     L++    +I     G K + A   
Sbjct: 117 TFAGLSICLTG-FDDMNHRNSLQKLITENGAEFRRDLTKSVTHLIARSGYGQKYKYATLW 175

Query: 705 GVKIMNEEQFLFLLQQ 720
            + +++ +     L++
Sbjct: 176 KITVVSLKWLQDSLER 191


>gi|325957866|ref|YP_004289332.1| helicase domain-containing protein [Methanobacterium sp. AL-21]
 gi|325329298|gb|ADZ08360.1| helicase domain protein [Methanobacterium sp. AL-21]
          Length = 769

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 11/86 (12%)

Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSL-GIRHVGAEIARSLAKYYLSYQNFAQEINNI 587
                  +++     K+   + E+ IF +  + ++G   AR L + + + +         
Sbjct: 671 REQTHERSDIQIRTEKKPLTTWEQQIFIVESLPNIGPVTARKLLEEFKTVRGVINASE-- 728

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIV 613
                     L +V  +GD IA+ I+
Sbjct: 729 --------EELKKVDGIGDKIAKNII 746


>gi|115473907|ref|NP_001060552.1| Os07g0663700 [Oryza sativa Japonica Group]
 gi|33354195|dbj|BAC81153.1| putative sex determination protein tasselseed 2 [Oryza sativa
           Japonica Group]
 gi|50510238|dbj|BAD31436.1| putative sex determination protein tasselseed 2 [Oryza sativa
           Japonica Group]
 gi|113612088|dbj|BAF22466.1| Os07g0663700 [Oryza sativa Japonica Group]
 gi|215697851|dbj|BAG92044.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737704|dbj|BAG96834.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215741614|dbj|BAG98109.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218200207|gb|EEC82634.1| hypothetical protein OsI_27228 [Oryza sativa Indica Group]
 gi|222637628|gb|EEE67760.1| hypothetical protein OsJ_25473 [Oryza sativa Japonica Group]
          Length = 300

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
             N     A       S      N +  +  K  V TG    I +  A+E++   GA V
Sbjct: 11  ETNRALGAATSPAGFVSGFSTASNSAQRLAGKVAVITGGASGIGKATAKEFIE-NGAKV 68


>gi|225875086|emb|CAX65092.1| C. elegans protein Y64G10A.7b, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
 gi|225875088|emb|CAX65095.1| C. elegans protein Y64G10A.7b, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
          Length = 1714

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/364 (8%), Positives = 69/364 (18%), Gaps = 26/364 (7%)

Query: 157  GHSGEDVSACIRA----IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
            G  G D     +     I           P     + +   +   F     +        
Sbjct: 956  GRFGIDCMQLCKCQNGAICDTSNGSCECAPGWSGKKCDKACAPGTFGKDCSKKCDCADGM 1015

Query: 213  YANPRNAASGILRRLNPTDITRYLNFFVHGLGK----TSEIFAKGQYEMLQKMRCLGFPV 268
            + +P +                  +  + G G     + +  A             G+  
Sbjct: 1016 HCDPSDGECICPPGKKGHKCDETCDSGLFGAGCKGICSCQNGATCDSVTGSCECRPGWRG 1075

Query: 269  NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
                R                   +      +  V + D  + + +       P    S 
Sbjct: 1076 KKCDRPCPDGRFGEGCNAICDCTTTNDTSMYNPFVARCDHVTGECRCPAGWTGPDCQTSC 1135

Query: 329  KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA--------------LITNATLH 374
                +             G +          P    G                + +    
Sbjct: 1136 -PLGRHGEGCRHSCQCSNGASCDRVTGFCDCPSGFMGKNCESECPEGLWGSNCMKHCLCM 1194

Query: 375  NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
            +       +   + + G           +   G+           +        +    C
Sbjct: 1195 HGGECNKENGDCECIDGWTG---PSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRCEC 1251

Query: 435  PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
                S    + +  +G   A    T      A       H   +  +  +   +  L  +
Sbjct: 1252 LPGWSGEHCEKSCVSGHYGAKCEETCECENGALCDPISGHCSCQPGWRGKKCNRPCLKGY 1311

Query: 495  FKSE 498
            F   
Sbjct: 1312 FGRH 1315


>gi|225875085|emb|CAX65091.1| C. elegans protein Y64G10A.7a, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
 gi|225875087|emb|CAX65094.1| C. elegans protein Y64G10A.7a, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
          Length = 1654

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/364 (8%), Positives = 69/364 (18%), Gaps = 26/364 (7%)

Query: 157  GHSGEDVSACIRA----IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
            G  G D     +     I           P     + +   +   F     +        
Sbjct: 896  GRFGIDCMQLCKCQNGAICDTSNGSCECAPGWSGKKCDKACAPGTFGKDCSKKCDCADGM 955

Query: 213  YANPRNAASGILRRLNPTDITRYLNFFVHGLGK----TSEIFAKGQYEMLQKMRCLGFPV 268
            + +P +                  +  + G G     + +  A             G+  
Sbjct: 956  HCDPSDGECICPPGKKGHKCDETCDSGLFGAGCKGICSCQNGATCDSVTGSCECRPGWRG 1015

Query: 269  NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
                R                   +      +  V + D  + + +       P    S 
Sbjct: 1016 KKCDRPCPDGRFGEGCNAICDCTTTNDTSMYNPFVARCDHVTGECRCPAGWTGPDCQTSC 1075

Query: 329  KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA--------------LITNATLH 374
                +             G +          P    G                + +    
Sbjct: 1076 -PLGRHGEGCRHSCQCSNGASCDRVTGFCDCPSGFMGKNCESECPEGLWGSNCMKHCLCM 1134

Query: 375  NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
            +       +   + + G           +   G+           +        +    C
Sbjct: 1135 HGGECNKENGDCECIDGWTG---PSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRCEC 1191

Query: 435  PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
                S    + +  +G   A    T      A       H   +  +  +   +  L  +
Sbjct: 1192 LPGWSGEHCEKSCVSGHYGAKCEETCECENGALCDPISGHCSCQPGWRGKKCNRPCLKGY 1251

Query: 495  FKSE 498
            F   
Sbjct: 1252 FGRH 1255


>gi|282162816|ref|YP_003355201.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
 gi|282155130|dbj|BAI60218.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
          Length = 765

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 10/56 (17%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           I  VG  I+++L +++ S +N                  L+ V  VG+  A  I E
Sbjct: 710 ISEVGPVISKNLLRHFGSVKNIVSASK----------EELMEVDKVGEKTAAKIRE 755


>gi|302141765|emb|CBI18968.3| unnamed protein product [Vitis vinifera]
          Length = 952

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689
                 +  T  +   +R + +  + Q G   SA L+R    +I
Sbjct: 187 PFSGLTICVT-KIPADERKEMEILIKQNGGKYSADLTRNCTHLI 229


>gi|212659328|ref|NP_502737.3| hypothetical protein Y64G10A.7 [Caenorhabditis elegans]
          Length = 1611

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/364 (8%), Positives = 69/364 (18%), Gaps = 26/364 (7%)

Query: 157  GHSGEDVSACIRA----IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
            G  G D     +     I           P     + +   +   F     +        
Sbjct: 853  GRFGIDCMQLCKCQNGAICDTSNGSCECAPGWSGKKCDKACAPGTFGKDCSKKCDCADGM 912

Query: 213  YANPRNAASGILRRLNPTDITRYLNFFVHGLGK----TSEIFAKGQYEMLQKMRCLGFPV 268
            + +P +                  +  + G G     + +  A             G+  
Sbjct: 913  HCDPSDGECICPPGKKGHKCDETCDSGLFGAGCKGICSCQNGATCDSVTGSCECRPGWRG 972

Query: 269  NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328
                R                   +      +  V + D  + + +       P    S 
Sbjct: 973  KKCDRPCPDGRFGEGCNAICDCTTTNDTSMYNPFVARCDHVTGECRCPAGWTGPDCQTSC 1032

Query: 329  KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA--------------LITNATLH 374
                +             G +          P    G                + +    
Sbjct: 1033 -PLGRHGEGCRHSCQCSNGASCDRVTGFCDCPSGFMGKNCESECPEGLWGSNCMKHCLCM 1091

Query: 375  NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
            +       +   + + G           +   G+           +        +    C
Sbjct: 1092 HGGECNKENGDCECIDGWTG---PSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRCEC 1148

Query: 435  PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
                S    + +  +G   A    T      A       H   +  +  +   +  L  +
Sbjct: 1149 LPGWSGEHCEKSCVSGHYGAKCEETCECENGALCDPISGHCSCQPGWRGKKCNRPCLKGY 1208

Query: 495  FKSE 498
            F   
Sbjct: 1209 FGRH 1212


>gi|299535730|ref|ZP_07049051.1| ComE operon protein 1 [Lysinibacillus fusiformis ZC1]
 gi|298728930|gb|EFI69484.1| ComE operon protein 1 [Lysinibacillus fusiformis ZC1]
          Length = 208

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 22/62 (35%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              I  N  D  +L  +P +G   AQ+I+ + +       ++ L           EK   
Sbjct: 144 EQKININKADVATLATLPGIGPSKAQSILTYREENGQFQTIDDLKNVSGIGDKTFEKLKD 203

Query: 645 SE 646
           S 
Sbjct: 204 SI 205


>gi|260461743|ref|ZP_05809989.1| superfamily I DNA/RNA helicase [Mesorhizobium opportunistum
           WSM2075]
 gi|259032384|gb|EEW33649.1| superfamily I DNA/RNA helicase [Mesorhizobium opportunistum
           WSM2075]
          Length = 84

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 9/62 (14%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---------GSKLEKAQ 702
            V TG      R    E + + G      +  +TD ++V             G+K+ +A 
Sbjct: 2   FVLTGKFAIGPRKVIAEMICERGGDWKETVCGQTDYLVVAAEASRDWKHSHEGTKIIRAM 61

Query: 703 QL 704
           +L
Sbjct: 62  EL 63


>gi|124027693|ref|YP_001013013.1| hypothetical protein Hbut_0815 [Hyperthermus butylicus DSM 5456]
 gi|123978387|gb|ABM80668.1| conserved archaeal protein [Hyperthermus butylicus DSM 5456]
          Length = 273

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEI 647
                 +  L+RVP +G   A+ IVEF    +    +E L   + P   R ++ +  S++
Sbjct: 209 DPTTAKFRELLRVPGIGPRTARRIVEF--REKGELTLERLRNILGPRWKRAQRYLDTSKL 266

Query: 648 EN-KKLV 653
              K+LV
Sbjct: 267 SGAKRLV 273


>gi|291302917|ref|YP_003514195.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Stackebrandtia nassauensis DSM 44728]
 gi|290572137|gb|ADD45102.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 20/49 (40%)

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
                 +  N      L  +P +G + A +IVE+ +      +V+ L +
Sbjct: 159 NAPGEPVNLNKATEDELATLPGIGPVTAASIVEYREQSGGFDSVDQLTE 207


>gi|222153373|ref|YP_002562550.1| competence protein [Streptococcus uberis 0140J]
 gi|222114186|emb|CAR42718.1| putative competence protein [Streptococcus uberis 0140J]
          Length = 226

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 25/63 (39%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
           +  +  N      L ++P +G+  AQ I++   +     +++ LL          EK  +
Sbjct: 162 DQKVNINKATIEDLRKIPGIGEKRAQEILDARDSKGGFKSIDDLLTISGIGQKTLEKIKN 221

Query: 645 SEI 647
             I
Sbjct: 222 DII 224


>gi|145339101|ref|NP_189979.3| unknown protein [Arabidopsis thaliana]
 gi|49823526|gb|AAT68746.1| hypothetical protein At3g43930 [Arabidopsis thaliana]
 gi|332644324|gb|AEE77845.1| BRCT domain-containing DNA repair protein [Arabidopsis thaliana]
          Length = 502

 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 1/37 (2%)

Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
                        +  TG L K  R + +E   +LG 
Sbjct: 49  PPVRSDGPFSGLIICVTG-LSKEARKQVKEATERLGG 84


>gi|316974457|gb|EFV57944.1| putative calcium binding EGF domain protein [Trichinella spiralis]
          Length = 1164

 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 36/380 (9%), Positives = 81/380 (21%), Gaps = 50/380 (13%)

Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG--EVYIS-- 194
           I+  YE G +       DG++G D +  I     I   + LN  + +   G  +      
Sbjct: 215 ISHLYENGSYAAYCNCDDGYTGSDCATDINECSDIANPVCLNNGKCVNEVGSYKCICPIR 274

Query: 195 ----KNDFLALNDEMIAVGRKP--------YANPRNAASGILRRLNPTDITRYLN--FFV 240
                 +F      +                       S I           +      +
Sbjct: 275 FDGRNCEFETDMCTLNPCQNNASCVTKSELKDGYECLCSDIFTGKTCETRIDFCQGITCM 334

Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV---------SYYNEMKSI 291
           +G   ++      +      +        +   + +   G+              +    
Sbjct: 335 YGGTCSNLNEGGYECLCKPMLSGKHCEKISMCEEISCNFGVCKYSVDESSVFCECKNGYT 394

Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351
                 DI+  +Y+ +           + S +     KF            +I   R+  
Sbjct: 395 GKFCDSDINECIYQENPCKNNGTCVNTSGSYKCECPSKFEGTHCEISKDH-EIDPCRSNP 453

Query: 352 LT------------------PVARLEPVNIGGA--LITNATLHNEDYIKGLDASGKVMRG 391
            +                       E            N T  N       D +  + + 
Sbjct: 454 CSNQATCITLSDDLEEYECKCRIGFEGRLCEKKIDYCKNVTCANGGECINTDDNNYICKC 513

Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451
                 G      R  +++  +      +   +   +     C          ++     
Sbjct: 514 KTGF-SGRHCEEIRICDLVSCIHGTCKYDLFENG-DYVSFCNCNPGYQGKDCSIDIDECA 571

Query: 452 LVAAHRCTGGLACSAQQLER 471
               + C     C       
Sbjct: 572 DKVNYPCLNNGTCFNDIGSY 591


>gi|268325930|emb|CBH39518.1| putative ATP-dependent RNA helicase [uncultured archaeon]
          Length = 780

 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 10/65 (15%)

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           F   + ++G    R L   + + +                   L+ V  VGD  A+ I +
Sbjct: 723 FVSALSNIGIMTTRKLLAKFKTIERIMAASK----------EELMEVENVGDKTAEHIKK 772

Query: 615 FYQNP 619
            +   
Sbjct: 773 VFSTE 777


>gi|226309777|ref|YP_002769671.1| DNA integrity scanning protein DisA [Brevibacillus brevis NBRC
           100599]
 gi|226092725|dbj|BAH41167.1| DNA integrity scanning protein DisA [Brevibacillus brevis NBRC
           100599]
          Length = 358

 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 11/124 (8%)

Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR-RNISLERFIFSLGIRHVG 563
           R P+    L  R        E +     +       + +    ++S   +     IR + 
Sbjct: 243 RDPSYSPDLVLRDMKKLNSEEMLELTSFLRTLGYSSNASMLDESVSPRGYRILYKIRRLP 302

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
             I  +L +++                       L  V  +G++ A+AI E  +  +   
Sbjct: 303 VTIISNLVEHFHHLPRIMMAT----------IQELDEVEGIGEVRARAIKEGLKRIQEQV 352

Query: 624 AVEA 627
            ++ 
Sbjct: 353 FIDR 356


>gi|282882711|ref|ZP_06291318.1| late competence protein [Peptoniphilus lacrimalis 315-B]
 gi|281297372|gb|EFA89861.1| late competence protein [Peptoniphilus lacrimalis 315-B]
          Length = 204

 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 6/105 (5%)

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
           DS N  + +S E  I+                    S    A   N +I  N+     L+
Sbjct: 101 DSCNLAKKLSDEDKIYIKTFDESADNNFNI-----DSSTAKAISSNILINLNSASKDELM 155

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
           ++P VG   A  I+++ +      +VE L         + EK   
Sbjct: 156 KIPGVGPKTADKIIDY-REKFQFKSVEDLKNVDGIGDKKFEKLKD 199


>gi|260881563|ref|ZP_05404712.2| competence protein [Mitsuokella multacida DSM 20544]
 gi|260848766|gb|EEX68773.1| competence protein [Mitsuokella multacida DSM 20544]
          Length = 224

 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 26/70 (37%)

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
            S  +     +  +  N      L  +P +G  +AQ I+EF +      A+E + K    
Sbjct: 151 KSGTSSKAAPSGPVNINTASAEELDTLPGIGPAMAQRIIEFRETEGAFTAIEDIKKVKGI 210

Query: 635 SIGRHEKNVS 644
              + EK   
Sbjct: 211 GEAKFEKMKD 220


>gi|45358958|ref|NP_988515.1| Hef nuclease [Methanococcus maripaludis S2]
 gi|45047824|emb|CAF30951.1| Helix-hairpin-helix motif:DEAD/DEAH box helicase:Helicase,
           C-terminal:Helix-hairpin-helix DNA-binding, class
           1:ERCC4 domain [Methanococcus maripaludis S2]
          Length = 752

 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           G+  VG  +A +L   + S +N                  L  V  VG I A+ I E
Sbjct: 698 GLPDVGPVMAENLLDNFNSVENIFTASEK----------ELTSVDGVGPITAKKIRE 744


>gi|296119910|ref|ZP_06838464.1| competence protein [Corynebacterium ammoniagenes DSM 20306]
 gi|295967064|gb|EFG80335.1| competence protein [Corynebacterium ammoniagenes DSM 20306]
          Length = 225

 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%)

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
              +++I  N+     L+ +P VG++ A+AIV       +  +VE LL        + EK
Sbjct: 159 SADSSLINLNSATAAELMELPGVGEVTAEAIVSHRDTAGSFTSVEQLLNVSGIGPAKFEK 218

Query: 642 NVSS 645
               
Sbjct: 219 LQDQ 222


>gi|218194147|gb|EEC76574.1| hypothetical protein OsI_14406 [Oryza sativa Indica Group]
 gi|218194148|gb|EEC76575.1| hypothetical protein OsI_14407 [Oryza sativa Indica Group]
 gi|222626205|gb|EEE60337.1| hypothetical protein OsJ_13437 [Oryza sativa Japonica Group]
          Length = 322

 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 36  YQYSKPIILDSEYDALKRRCDA 57
           Y    PI+ D+E+D LK R   
Sbjct: 150 YAAGNPIMSDAEFDQLKLRLKK 171


>gi|115456709|ref|NP_001051955.1| Os03g0857400 [Oryza sativa Japonica Group]
 gi|30102983|gb|AAP21396.1| unknown protein [Oryza sativa Japonica Group]
 gi|108712199|gb|ABF99994.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550426|dbj|BAF13869.1| Os03g0857400 [Oryza sativa Japonica Group]
 gi|215704395|dbj|BAG93829.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 324

 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 36  YQYSKPIILDSEYDALKRRCDA 57
           Y    PI+ D+E+D LK R   
Sbjct: 152 YAAGNPIMSDAEFDQLKLRLKK 173


>gi|3258335|dbj|BAA31018.1| 90aa long hypothetical DNA excision repair protein [Pyrococcus
           horikoshii OT3]
          Length = 90

 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 10/56 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
            + +V   +AR L +++ S +                   L++V  +G+ IA+ I 
Sbjct: 34  SLPNVSTTLARRLLRHFGSVEKVFTA----------SVPELMKVEGIGEKIAREIR 79


>gi|302497759|ref|XP_003010879.1| hypothetical protein ARB_02918 [Arthroderma benhamiae CBS 112371]
 gi|291174424|gb|EFE30239.1| hypothetical protein ARB_02918 [Arthroderma benhamiae CBS 112371]
          Length = 1048

 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 653 VFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKI 708
           VF+G L             +    GA +++ ++ +T  ++ G N  +K+ +A +   +KI
Sbjct: 730 VFSGVLPLGTDTQNADISLWAKSFGATITSKINSRTTHLVAGRNRTAKVREATRYPKIKI 789

Query: 709 MNEEQFL------FLLQQYNTTLRIHDDD 731
           +  +  L        L +    + +H DD
Sbjct: 790 VTVQWLLDCMIQWKHLDEEPYLVPVHPDD 818


>gi|294790861|ref|ZP_06756019.1| excinuclease ABC subunit C [Scardovia inopinata F0304]
 gi|294458758|gb|EFG27111.1| excinuclease ABC subunit C [Scardovia inopinata F0304]
          Length = 775

 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 32/108 (29%), Gaps = 13/108 (12%)

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
           P + + L  ++Q+    +   +          Y    + +            I  +G   
Sbjct: 646 PHEEYPLIMKRQSEGMYLMQRVRDESHRFAITYHRKKRSKGSLRSA---LDSIEGIGLSY 702

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            + L  ++ S +   Q               L  V  VG   A+AI +
Sbjct: 703 QKRLLNHFGSVKAMRQAT----------VQELQEVRGVGAKKAEAIYQ 740


>gi|330686124|gb|EGG97745.1| comEA protein [Staphylococcus epidermidis VCU121]
          Length = 223

 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
              I  N+     L++VP +G   A+ I+EF     +  +++ L           EK
Sbjct: 160 KTPINLNSATEEQLMKVPGIGPSKAKEIIEFKNQKGSFNSIDDLKNIKGFGPKTFEK 216


>gi|300390220|gb|ADK10922.1| ComEA [Thermoanaerobacterium saccharolyticum]
          Length = 204

 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRH 639
              N  I  N      L  +P +G++ AQ I++F +   N   +E ++    + P +   
Sbjct: 137 NAANGKININTATKEELDTLPGIGEVTAQRIIDFREQHGNFQKIEDIMNVSRIGPKLFEQ 196

Query: 640 EKNV 643
            K+ 
Sbjct: 197 IKDK 200


>gi|167746033|ref|ZP_02418160.1| hypothetical protein ANACAC_00728 [Anaerostipes caccae DSM 14662]
 gi|167654548|gb|EDR98677.1| hypothetical protein ANACAC_00728 [Anaerostipes caccae DSM 14662]
          Length = 1061

 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + +++L++L+      ++   Q  K  I   +YDAL+R          +L R E      
Sbjct: 67  ETKEKLATLKTAAEQANE---QLQKGEISQEQYDALQREIAETEA---ELKRLESQASKT 120

Query: 76  NK-------IGGEMNL 84
           N+       +G ++  
Sbjct: 121 NQTLTKIGEVGSKVES 136


>gi|15643810|ref|NP_228858.1| comEA protein-related protein [Thermotoga maritima MSB8]
 gi|4981594|gb|AAD36129.1|AE001765_8 comEA protein-related protein [Thermotoga maritima MSB8]
          Length = 181

 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 19/75 (25%)

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
             N      L+ +P +G + AQ I+++                   S     KNVS    
Sbjct: 48  ELNTASLEDLMSIPGIGPVKAQRIIDY------------RESHGGFSSVEELKNVSGI-- 93

Query: 649 NKKLVFTGTLQKIQR 663
            +K     TL+KI R
Sbjct: 94  GEK-----TLEKISR 103


>gi|254441463|ref|ZP_05054956.1| helicase, RecD/TraA family [Octadecabacter antarcticus 307]
 gi|198251541|gb|EDY75856.1| helicase, RecD/TraA family [Octadecabacter antarcticus 307]
          Length = 729

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/148 (10%), Positives = 41/148 (27%), Gaps = 10/148 (6%)

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
           +      L         K+      +        +   +  + +          +     
Sbjct: 18  ERVTFHSLESGFCVLRLKARGHRDLVTTIGHAAMISAGEWVTASGDWINDRDHGLQFKAR 77

Query: 539 YDSINK-RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597
           +   +       +E+++ S  IR +G   A+ + K +           ++      +   
Sbjct: 78  FLRTSAPSSLEGIEKYLGSGMIRGIGPVYAKRMVKKFG---------KDVFDLIEAEPER 128

Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAV 625
           L  V  +G   A  I   + + + I  +
Sbjct: 129 LREVEGIGPKRADKITSAWADQKVIREI 156


>gi|311064421|ref|YP_003971146.1| excinuclease ABC subunit C [Bifidobacterium bifidum PRL2010]
 gi|310866740|gb|ADP36109.1| UvrC Excinuclease ABC subunit C [Bifidobacterium bifidum PRL2010]
          Length = 780

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 13/113 (11%)

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
           P D + +  ++Q+    +   +          Y    +R+           GI  VG   
Sbjct: 681 PDDEYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSA---LDGIPGVGETY 737

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
            + L  ++ S +                   L  V  +G   A+AI       
Sbjct: 738 QKRLLSHFGSVRAMRDA----------SVEELEAVKGIGHAKAEAIHTALHTE 780


>gi|310287507|ref|YP_003938765.1| Excinuclease ABC subunit C [Bifidobacterium bifidum S17]
 gi|309251443|gb|ADO53191.1| Excinuclease ABC subunit C [Bifidobacterium bifidum S17]
          Length = 780

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 13/113 (11%)

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
           P D + +  ++Q+    +   +          Y    +R+           GI  VG   
Sbjct: 681 PDDEYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSA---LDGIPGVGETY 737

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
            + L  ++ S +                   L  V  +G   A+AI       
Sbjct: 738 QKRLLSHFGSVRAMRDA----------SVEELEAVKGIGHAKAEAIHTALHTE 780


>gi|158425590|ref|YP_001526882.1| excinuclease ABC C subunit [Azorhizobium caulinodans ORS 571]
 gi|158332479|dbj|BAF89964.1| excinuclease ABC C subunit [Azorhizobium caulinodans ORS 571]
          Length = 718

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 10/83 (12%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ R            I  VG    R+L +++ + +   +             
Sbjct: 642 HRFAIGSHRARRKKDISDAGLQAIPGVGPTRKRALLRHFGTLKAIERA----------SL 691

Query: 596 LSLIRVPLVGDIIAQAIVEFYQN 618
             L +VP V    A+AI E++ +
Sbjct: 692 ADLEQVPGVNASTARAIYEYFHD 714


>gi|3220000|sp|P26446|PARP1_CHICK RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
           AltName: Full=NAD(+) ADP-ribosyltransferase 1;
           Short=ADPRT 1; AltName: Full=Poly[ADP-ribose] synthase 1
          Length = 1011

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 637 GRHEKNVSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII-----IV 690
                     + N K+  T G L K  + + +  V +LG  ++   ++ T  I     + 
Sbjct: 377 ETVTAPQDKPLTNMKI-LTLGKLSK-NKEEVKNIVEELGGKMTTTANKATLCISTQKEV- 433

Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +    K+E+ +   V++++E +FL 
Sbjct: 434 -EKMSKKMEEVKDAKVRVVSE-EFLK 457


>gi|45383984|ref|NP_990594.1| poly [ADP-ribose] polymerase 1 [Gallus gallus]
 gi|63743|emb|CAA36917.1| unnamed protein product [Gallus gallus]
          Length = 1011

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 637 GRHEKNVSSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII-----IV 690
                     + N K+  T G L K  + + +  V +LG  ++   ++ T  I     + 
Sbjct: 377 ETVTAPQDKPLTNMKI-LTLGKLSK-NKEEVKNIVEELGGKMTTTANKATLCISTQKEV- 433

Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLF 716
            +    K+E+ +   V++++E +FL 
Sbjct: 434 -EKMSKKMEEVKDAKVRVVSE-EFLK 457


>gi|294813204|ref|ZP_06771847.1| DNA integrity scanning protein disA [Streptomyces clavuligerus ATCC
           27064]
 gi|326441684|ref|ZP_08216418.1| DNA integrity scanning protein DisA [Streptomyces clavuligerus ATCC
           27064]
 gi|294325803|gb|EFG07446.1| DNA integrity scanning protein disA [Streptomyces clavuligerus ATCC
           27064]
          Length = 383

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +  +   I   L +++   Q                   L  V  VG+  A+++ E    
Sbjct: 323 VPRLPGAIIERLVEHFGGLQKLLAA----------SVDDLQAVDGVGEARARSVREGLSR 372

Query: 619 PRNICAVEA 627
                 +E 
Sbjct: 373 LAESSILER 381


>gi|320010088|gb|ADW04938.1| DNA integrity scanning, DisA, linker region [Streptomyces
           flavogriseus ATCC 33331]
          Length = 374

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +  +   I   L +++   Q                   L  V  VG+  A+++ E    
Sbjct: 314 VPRLPGAIIERLVEHFGGLQKLLAA----------SVDDLQAVDGVGEARARSVREGLSR 363

Query: 619 PRNICAVEA 627
                 +E 
Sbjct: 364 LAESSILER 372


>gi|300023522|ref|YP_003756133.1| excinuclease ABC, C subunit [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525343|gb|ADJ23812.1| excinuclease ABC, C subunit [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 670

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 10/83 (12%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ +            I  +G    R+L K++ S            A +    
Sbjct: 595 HRFAIGTHRAKRAKALGVNPLDEIDGIGPTRKRALLKHFGS----------AKAVSRAGI 644

Query: 596 LSLIRVPLVGDIIAQAIVEFYQN 618
             L  V  +   +A+ I +F+ +
Sbjct: 645 EDLKAVEGISADMARRIYDFFHD 667


>gi|297192897|ref|ZP_06910295.1| DNA integrity scanning protein disA [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197722614|gb|EDY66522.1| DNA integrity scanning protein disA [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 374

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +  +   I   L +++   Q                   L  V  VG+  A+++ E    
Sbjct: 314 VPRLPGAIIERLVEHFGGLQKLLAA----------SVDDLQAVDGVGEARARSVREGLSR 363

Query: 619 PRNICAVEA 627
                 +E 
Sbjct: 364 LAESSILER 372


>gi|68062632|ref|XP_673324.1| replication factor C subunit 1 [Plasmodium berghei strain ANKA]
 gi|56491097|emb|CAH96916.1| replication factor C subunit 1, putative [Plasmodium berghei]
          Length = 512

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 14/50 (28%)

Query: 675 AVVSAILSRKTDIIIVGD--------NPGSKLEKAQQLG------VKIMN 710
             V + +S KT  +I G+        N G K +KA +L       +KI+N
Sbjct: 1   GSVMSAVSSKTHYLIHGEYLEDGRLYNEGKKYQKAYELSKQSKSIIKILN 50


>gi|311742584|ref|ZP_07716393.1| excision endonuclease subunit UvrC [Aeromicrobium marinum DSM
           15272]
 gi|311314212|gb|EFQ84120.1| excision endonuclease subunit UvrC [Aeromicrobium marinum DSM
           15272]
          Length = 648

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 10/57 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            +  +G    ++L + + S +                   + +VP +G   AQ+IV+
Sbjct: 581 DVAGLGPTRRKALMRQFGSLKRLRAAT----------VEEVAQVPGIGPATAQSIVQ 627


>gi|195062453|ref|XP_001996195.1| GH22365 [Drosophila grimshawi]
 gi|193899690|gb|EDV98556.1| GH22365 [Drosophila grimshawi]
          Length = 992

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 20/69 (28%)

Query: 657 TLQKIQRHKA--QEYVTQLGAVVSAILSRKTDIII-----------VGDNPGSKLEKAQQ 703
           +L  ++  +A  ++ + +LG          T I++           V +   S+++KA++
Sbjct: 389 SLIGMKDSEAEIKKRIGKLGGKF------DTKILVDTIAIISTEKEV-EKMSSRMKKAKE 441

Query: 704 LGVKIMNEE 712
           LG+ I+ E+
Sbjct: 442 LGIHIIPEK 450


>gi|188586920|ref|YP_001918465.1| helicase, RecD/TraA family [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351607|gb|ACB85877.1| helicase, RecD/TraA family [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 726

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 9/79 (11%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I+ +G + A SL +++            ++    +    L  VP +G   A  I   +Q 
Sbjct: 92  IKGIGPKTAESLVEHFG---------KEVLQVIENTPEKLQEVPGIGKEKAAQISRGFQE 142

Query: 619 PRNICAVEALLKEVSPSIG 637
            + I  +   L+E   S  
Sbjct: 143 HKQIKDIMVFLQEFGVSPA 161


>gi|323507821|emb|CBQ67692.1| related to DNA topoisomerase II binding protein [Sporisorium
           reilianum]
          Length = 1201

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 16/100 (16%)

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG------TLQKIQRHKAQEYVTQL 673
                 +      +        + +  ++   +  TG      TL +  R         L
Sbjct: 48  HFRRLRDDGRDHGAHLDSDFIGSSARPLKGAIISITGLGDTKATLTQYARE--------L 99

Query: 674 GAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEE 712
           GA V   L+     +I  D PGS K   A +LG+ I++ +
Sbjct: 100 GARVEGNLTEDVTHLIA-DRPGSEKYRFALELGMHIVSPD 138


>gi|170053161|ref|XP_001862547.1| poly [Culex quinquefasciatus]
 gi|167873802|gb|EDS37185.1| poly [Culex quinquefasciatus]
          Length = 1000

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 37/84 (44%), Gaps = 13/84 (15%)

Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG----- 691
               K     + N + V  G  +   + + ++ + +LG  V+  ++  T   I       
Sbjct: 381 EPKIKREKPPLYNLEFVILGKTET-PKDQLKDKILKLGGKVTTKIT-NT---IAAIISTP 435

Query: 692 ---DNPGSKLEKAQQLGVKIMNEE 712
              +  GS++++A+ + ++++ E+
Sbjct: 436 AEVERMGSRMQEAKDMQIQVVPED 459


>gi|324523831|gb|ADY48308.1| DNA excision repair protein ERCC-1 [Ascaris suum]
          Length = 226

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 25/90 (27%), Gaps = 10/90 (11%)

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
                        N+             GIR +    A+ L   + S    A        
Sbjct: 143 QEKKKKRQGISETNESCQQIQRAVDLLCGIRSISTSDAQRLIGTFGSIAAIANA------ 196

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
               D   L   P +G + A+ I  F++ P
Sbjct: 197 ----DVERLSLCPGLGPVKAENIFMFFRIP 222


>gi|32398840|emb|CAD98550.1| excision repair cross-complementing rodent repair
           deficiency,complementation group 1, possible
           [Cryptosporidium parvum]
          Length = 224

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 10/62 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            +  +    + +L K++ S                     L ++  +G I A+ I E + 
Sbjct: 169 SLPRINKTDSENLLKHFGSISKVVNASE----------EELSKIQGIGPIKAKVISEIFS 218

Query: 618 NP 619
             
Sbjct: 219 TE 220


>gi|167759418|ref|ZP_02431545.1| hypothetical protein CLOSCI_01765 [Clostridium scindens ATCC 35704]
 gi|167662975|gb|EDS07105.1| hypothetical protein CLOSCI_01765 [Clostridium scindens ATCC 35704]
          Length = 202

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 25/66 (37%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
           A+  +  I  N      L+ +  +G+  A AI+ + +      ++E L++      G   
Sbjct: 135 AEASDGKINLNTAAKEQLMTLTGIGETKAAAIIRYREENGGFQSIEELMEVEGIKEGVFN 194

Query: 641 KNVSSE 646
           K     
Sbjct: 195 KIKDQI 200


>gi|145297875|ref|YP_001140716.1| ComEA protein [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142850647|gb|ABO88968.1| ComEA protein [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 106

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 19/56 (33%)

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
             N      L  +  +G+  AQAIV+F Q       VE L           E N  
Sbjct: 46  NLNTASINELTALKGIGEKKAQAIVDFRQKQGKFTTVEQLADVSGIGPATLEANRD 101


>gi|296420139|ref|XP_002839638.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635821|emb|CAZ83829.1| unnamed protein product [Tuber melanosporum]
          Length = 866

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 646 EIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704
             +   +  TG +Q++  R K ++     GA     L++    +I   + G K + A+  
Sbjct: 108 TFQGLAISLTG-IQELSERKKIEDIARSHGASYHPDLTKSVSHLIAAISEGKKYDFARNN 166

Query: 705 GVKIMNEEQFLFLLQQ 720
           G++I+  E     L++
Sbjct: 167 GIRIVTIEWLYDSLER 182


>gi|295694808|ref|YP_003588046.1| DNA integrity scanning, DisA, linker region [Bacillus tusciae DSM
           2912]
 gi|295410410|gb|ADG04902.1| DNA integrity scanning, DisA, linker region [Bacillus tusciae DSM
           2912]
          Length = 361

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 21/51 (41%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +N  ++   +          L  V  +G++ A+AI E  +  R +  ++ 
Sbjct: 309 VENLVKQFQGLSGVMGATIEQLDDVEGIGEVRARAIREGLKRVRELVLIDR 359


>gi|186701836|ref|ZP_02971504.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 6 str. ATCC 27818]
 gi|186701125|gb|EDU19407.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 6 str. ATCC 27818]
          Length = 1442

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 540  DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595
            +  +K R+   +     L ++ +   +   LA+ +     S +        I   NN   
Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQNNAII 1378

Query: 596  LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
               I +  +G+ +A +I+E  +N +    +E L  
Sbjct: 1379 PPFIAIQGLGETVANSIIEA-RNQKAFSTIEDLKN 1412


>gi|158319509|ref|YP_001512016.1| DNA integrity scanning protein DisA [Alkaliphilus oremlandii
           OhILAs]
 gi|158139708|gb|ABW18020.1| protein of unknown function DUF147 [Alkaliphilus oremlandii OhILAs]
          Length = 358

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 18/51 (35%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
             N  ++  +           L  V  +G+  A+AI +  +  +    ++ 
Sbjct: 306 IDNLLKQFISFQKILKASTEQLDDVDGIGEARARAIKDGLRRLQEQVLLDR 356


>gi|170727433|ref|YP_001761459.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Shewanella woodyi ATCC 51908]
 gi|169812780|gb|ACA87364.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Shewanella woodyi ATCC 51908]
          Length = 107

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 30/64 (46%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
           AQ  +  I  N      L+R+  +G+  A+AI+EF Q   N  AV+ L +         E
Sbjct: 40  AQAQSLSININTAQVADLVRLKGIGEAKAKAIIEFRQANGNFKAVKELEQVKGIGAKLVE 99

Query: 641 KNVS 644
           KN S
Sbjct: 100 KNRS 103


>gi|239050005|ref|NP_001141772.2| hypothetical protein LOC100273908 [Zea mays]
 gi|194702532|gb|ACF85350.1| unknown [Zea mays]
 gi|238908946|gb|ACF87023.2| unknown [Zea mays]
          Length = 322

 Score = 39.4 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 25  EQEISYHDDCYYQYSKPIILDSEYDALKRRCD 56
           EQ++      Y     PI+ D+E+D LK R  
Sbjct: 139 EQKLLEASLAY-TSGNPIMSDAEFDELKLRLK 169


>gi|94987143|ref|YP_595076.1| nuclease subunit of the excinuclease complex [Lawsonia
           intracellularis PHE/MN1-00]
 gi|119367663|sp|Q1MQH2|UVRC_LAWIP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|94731392|emb|CAJ54755.1| Nuclease subunit of the excinuclease complex [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 621

 Score = 39.4 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 10/67 (14%)

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            L I  +G   A+ L  ++ + +                   L  +P +G+  A+ + E 
Sbjct: 565 LLRIPGIGQATAKLLWSHFKTVEAMTCAT----------IKDLEAIPGIGEAKARMLAER 614

Query: 616 YQNPRNI 622
            Q+ RN 
Sbjct: 615 LQSLRNQ 621


>gi|88602972|ref|YP_503150.1| Hef nuclease [Methanospirillum hungatei JF-1]
 gi|88188434|gb|ABD41431.1| helicase-like protein [Methanospirillum hungatei JF-1]
          Length = 750

 Score = 39.4 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
              +G + AR+L   + S +               +   L++VP +G   A+ I E
Sbjct: 698 FPDLGPKYARALLTAFGSLKAIIDA----------EKEELLQVPGIGAKKAEMIYE 743


>gi|304440493|ref|ZP_07400380.1| competence protein comEA [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370971|gb|EFM24590.1| competence protein comEA [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 193

 Score = 39.4 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 8/80 (10%)

Query: 569 SLAKYYLSYQNF-------AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
           +LA+     +           E ++ I  N      L  +P VG  +A  I+++ +    
Sbjct: 107 NLARKLKDEEKITIKSYLDKDEEDSKININTASKDMLTSIPGVGSKMADKIIKY-RQEHP 165

Query: 622 ICAVEALLKEVSPSIGRHEK 641
              +E LL        + E+
Sbjct: 166 FNTIEDLLNITGIGKKKFEE 185


>gi|256752162|ref|ZP_05493028.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748976|gb|EEU62014.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 201

 Score = 39.4 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKN 642
           N  I  N      L  +P +G + A+ I+EF +N  +   +E ++    + P +    K+
Sbjct: 137 NEKININTATKEELQTLPGIGPVTAERIIEFRENKGSFKKIEDIMNVPRIGPKMFEQIKD 196

Query: 643 V 643
            
Sbjct: 197 K 197


>gi|251799673|ref|YP_003014404.1| DNA integrity scanning protein DisA [Paenibacillus sp. JDR-2]
 gi|247547299|gb|ACT04318.1| protein of unknown function DUF147 [Paenibacillus sp. JDR-2]
          Length = 358

 Score = 39.4 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 18/51 (35%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
             N  +    +          L  V  +G++ A+AI +  +  +    ++ 
Sbjct: 306 MNNLIERFGRLPHILMATIDELDEVDGIGEVRARAIKDGLKRIQEQMFIDR 356


>gi|332266509|ref|XP_003282249.1| PREDICTED: zinc finger protein 57-like [Nomascus leucogenys]
          Length = 616

 Score = 39.4 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/289 (7%), Positives = 51/289 (17%), Gaps = 4/289 (1%)

Query: 158 HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPR 217
             G   +        +        P   E +       +              K  A  +
Sbjct: 289 KCGTVFTHLSSLKRHVKSHCGRTAPPCEECKQACICPSHLHSHGRTNTEEKPYKCQACRQ 348

Query: 218 NAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANT 277
                     +    T    +           FA     +    +   +      R A  
Sbjct: 349 TFQHPHSLSHHVKTHTAEKTYKWEQCRMAFNGFASFTRHVRTHTKDRPYKCQECGR-AFI 407

Query: 278 FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAST 337
           +   +  +    +          G  +   +   + +       P            + T
Sbjct: 408 YPSTLQRHMTTHTGEKPYKCQHCGKAFTYPQAFQRHEKTHMGEKPYECKQCGKTFSWSET 467

Query: 338 RLLDIDIQIGR--TGILTPVARLEPVNIGGALITNATLHNEDYIKGLD-ASGKVMRGGRD 394
             + + I  G                      +   T       K    A          
Sbjct: 468 LRVHMRIHTGEKLYKCENYGKAFTSSRSFQGHLRTHTGEKPYECKQCGKAFTWSSTFREH 527

Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443
           +R+  +  + +  +             H        P  C  C      
Sbjct: 528 VRIHTQEQLYKCEQCGKAFTWSSTLHNHVRMHTGEKPHKCKQCGMPFKW 576


>gi|308273064|emb|CBX29668.1| Uncharacterized protein MJ0504 [uncultured Desulfobacterium sp.]
          Length = 194

 Score = 39.4 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 9/60 (15%)

Query: 629 LKEVSP--SIGRHEKNVSSEIEN-KKLVFT---GTLQKIQR---HKAQEYVTQLGAVVSA 679
           +KEV    S G   K      E  K +V T   G L+  +R     A++++ + GAVV +
Sbjct: 39  IKEVVVASSKGETAKKALEIFEGFKVVVVTSHSGFLEPFKRVMPDSAKKHLEERGAVVIS 98


>gi|225175308|ref|ZP_03729303.1| excinuclease ABC, C subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225169060|gb|EEG77859.1| excinuclease ABC, C subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 620

 Score = 39.4 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/91 (12%), Positives = 28/91 (30%), Gaps = 10/91 (10%)

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589
                  + +    +R+     R    L +  +G    ++L K++ S     +       
Sbjct: 538 QRVRDEAHRFVITYQRKRRPGVRGSLLLDVPGIGEARRKALLKHFGSIAEMRRA------ 591

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
                   L  V  + + +A  + E+ +   
Sbjct: 592 ----SVEQLAEVEGMNEAVAATLYEYLREED 618


>gi|170289532|ref|YP_001739770.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Thermotoga sp. RQ2]
 gi|170177035|gb|ACB10087.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotoga sp. RQ2]
          Length = 181

 Score = 39.4 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 19/75 (25%)

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
             N      L+ +P +G + AQ I+++                   S     KNVS    
Sbjct: 48  ELNTASLEDLMSIPGIGPVKAQRIIDY------------RESHGGFSSVEELKNVSGI-- 93

Query: 649 NKKLVFTGTLQKIQR 663
            +K     TL+KI R
Sbjct: 94  GEK-----TLEKISR 103


>gi|300214350|gb|ADJ78766.1| Bifunctional protein folD (Includes: Methylenetetrahydrofolate
           dehydrogenase; Methenyltetrahydrofolate cyclohydrolase )
           [Lactobacillus salivarius CECT 5713]
          Length = 285

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 26/79 (32%)

Query: 676 VVSAILSRKTDII------------IVGDNPGS------KLEKAQQLGVKIMN------- 710
            +   +S K  ++            +VG++P S      K + A  LG++ ++       
Sbjct: 14  KIRTNVSEKVSLLKQEGITPKLVVILVGEDPASQVYVRNKRKTAHALGIEAVDIRLPENV 73

Query: 711 -EEQFLFLLQQYNTTLRIH 728
            E++ + L+ + N+   +H
Sbjct: 74  EEDELIRLIDELNSDGTVH 92


>gi|227890596|ref|ZP_04008401.1| methylenetetrahydrofolate dehydrogenase (NADP+) /
           methenyltetrahydrofolate cyclohydrolase [Lactobacillus
           salivarius ATCC 11741]
 gi|227867534|gb|EEJ74955.1| methylenetetrahydrofolate dehydrogenase (NADP+) /
           methenyltetrahydrofolate cyclohydrolase [Lactobacillus
           salivarius ATCC 11741]
          Length = 292

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 26/79 (32%)

Query: 676 VVSAILSRKTDII------------IVGDNPGS------KLEKAQQLGVKIMN------- 710
            +   +S K  ++            +VG++P S      K + A  LG++ ++       
Sbjct: 21  KIRTNVSEKVSLLKQEGITPKLVVILVGEDPASQVYVRNKRKTAHALGIEAVDIRLPENV 80

Query: 711 -EEQFLFLLQQYNTTLRIH 728
            E++ + L+ + N+   +H
Sbjct: 81  EEDELIRLIDELNSDGTVH 99


>gi|90961509|ref|YP_535425.1| methylenetetrahydrofolate dehydrogenase (NADP+) /
           methenyltetrahydrofolate cyclohydrolase [Lactobacillus
           salivarius UCC118]
 gi|119369803|sp|Q1WUJ3|FOLD_LACS1 RecName: Full=Bifunctional protein FolD; Includes: RecName:
           Full=Methylenetetrahydrofolate dehydrogenase; Includes:
           RecName: Full=Methenyltetrahydrofolate cyclohydrolase
 gi|90820703|gb|ABD99342.1| Methylenetetrahydrofolate dehydrogenase (NADP+) /
           Methenyltetrahydrofolate cyclohydrolase [Lactobacillus
           salivarius UCC118]
          Length = 285

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 26/79 (32%)

Query: 676 VVSAILSRKTDII------------IVGDNPGS------KLEKAQQLGVKIMN------- 710
            +   +S K  ++            +VG++P S      K + A  LG++ ++       
Sbjct: 14  KIRTNVSEKVSLLKQEGITPKLVVILVGEDPASQVYVRNKRKTAHALGIEAVDIRLPENV 73

Query: 711 -EEQFLFLLQQYNTTLRIH 728
            E++ + L+ + N+   +H
Sbjct: 74  EEDELIRLIDELNSDGTVH 92


>gi|117927438|ref|YP_871989.1| DNA integrity scanning protein DisA [Acidothermus cellulolyticus
           11B]
 gi|226729430|sp|A0LRE3|DISA_ACIC1 RecName: Full=DNA integrity scanning protein disA
 gi|117647901|gb|ABK52003.1| protein of unknown function DUF147 [Acidothermus cellulolyticus
           11B]
          Length = 368

 Score = 39.0 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +   +   L +++ + Q                   L  V  VG+  A+++ E    
Sbjct: 308 IPRLPCAVIERLVEHFGTLQKLLAA----------SVDDLQAVEGVGESRARSVREGLSR 357

Query: 619 PRNICAVEA 627
                 +E 
Sbjct: 358 LAESSILER 366


>gi|313895693|ref|ZP_07829249.1| comEA protein [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975819|gb|EFR41278.1| comEA protein [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 186

 Score = 39.0 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 572 KYYLSYQNF--AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
           + + S        + +  I  N  +   L  +P +G  ++  IVE+ +   N   +E + 
Sbjct: 108 QKFGSKTAVPAGNDTDGRININTANEKELQELPGIGPAMSARIVEYREANGNFKKIEDIK 167

Query: 630 KEVSPSIGRHEKNVS 644
           K       + EK   
Sbjct: 168 KIRGIGNAKFEKLKD 182


>gi|145337666|ref|NP_177856.2| MEI1 (meiosis defective 1); transcription coactivator [Arabidopsis
           thaliana]
 gi|332197842|gb|AEE35963.1| topoisomerase (DNA) II binding protein 1 [Arabidopsis thaliana]
          Length = 972

 Score = 39.0 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
                 +  T  +   +R   ++ +++ G   SA L++    +I     G K + A++ G
Sbjct: 184 PFSGLTICVT-RIPADERKGMEKVISEYGGSYSAELTKSCTHLIADAAEGDKYKVARKWG 242

Query: 706 -VKIMNEEQFLFLLQQY 721
            ++I+  + F   + + 
Sbjct: 243 HIQIVTRKWFQQSIDKK 259


>gi|34481719|emb|CAD54082.1| MEI1 protein [Arabidopsis thaliana]
          Length = 972

 Score = 39.0 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
                 +  T  +   +R   ++ +++ G   SA L++    +I     G K + A++ G
Sbjct: 184 PFSGLTICVT-RIPADERKGMEKVISEYGGSYSAELTKSCTHLIADAAEGDKYKVARKWG 242

Query: 706 -VKIMNEEQFLFLLQQY 721
            ++I+  + F   + + 
Sbjct: 243 HIQIVTRKWFQQSIDKK 259


>gi|219119748|ref|XP_002180627.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408100|gb|EEC48035.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 512

 Score = 39.0 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 14/112 (12%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA--ILSR 683
           + L   V+P         S  ++   +  TG   + +  +  E +  LG + +    +S+
Sbjct: 10  KRLRSNVAP---VKSDRSSGPLKGAVICLTGIDPEEK-DQYHEMIVDLGGIYTRDLDVSK 65

Query: 684 KTDIIIVGDNPGSKLEKAQ-QLGVKIMNEEQF------LFLLQQYNTTLRIH 728
            T  +I  D  G+K E A+    ++I+             L+ +   +L + 
Sbjct: 66  NT-HLIAVDPVGAKYETAKTTSSIRIVQPAWLESCFGNRALIDELKYSLDLP 116


>gi|159468702|ref|XP_001692513.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158278226|gb|EDP03991.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 333

 Score = 39.0 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 36  YQYSKPIILDSEYDALKRRCDA 57
           Y   KPI+ D +YDALK     
Sbjct: 134 YAKGKPIMTDEDYDALKAELRN 155


>gi|52631997|gb|AAU85397.1| predicted DNA-binding protein [uncultured archaeon GZfos12E1]
          Length = 507

 Score = 39.0 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 41/166 (24%), Gaps = 9/166 (5%)

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF---LALNDEMIAVG 209
            RG+G    ++         I  ++   + E+ E+R E       F     LN+      
Sbjct: 95  TRGNGAVSFEIKTNAEREAEIKEIIRTQVSELSELREEGTNPGVVFIDSDVLNENREEKR 154

Query: 210 RKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269
                   NA   +L   +   +    +F   GL        K                 
Sbjct: 155 GILKRFYENAVREVLTIEDAYGLISEFHFDYFGL------KNKRGLIGALAAASFLVLQR 208

Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315
           N  +               K    T     +  V+K D  +     
Sbjct: 209 NFRKPDYYDFTYELIAYRQKKRWGTPRVIDETSVWKADAATYPLTW 254


>gi|154150356|ref|YP_001403974.1| Hef nuclease [Candidatus Methanoregula boonei 6A8]
 gi|153998908|gb|ABS55331.1| helicase domain protein [Methanoregula boonei 6A8]
          Length = 745

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 11/140 (7%)

Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534
            +  +  +I        +                 +FT   +       +      G+  
Sbjct: 610 VMVIEGGDIYTQRDMNPNSLRGVLAALAIDMGITLLFTRDEQDTAQMLFVIAKREEGERG 669

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
              L+   +       + +I S     +G + AR L  ++ S Q                
Sbjct: 670 ERKLHPHKSFTSAKEEQEYIIS-AFPDIGLKNARLLLAHFGSVQGIVNAT---------- 718

Query: 595 WLSLIRVPLVGDIIAQAIVE 614
              L+ V  +G+     I E
Sbjct: 719 LEELVAVKGIGEKTGGKIFE 738


>gi|5051421|emb|CAB44964.1| ComEA protein [Neisseria meningitidis]
          Length = 170

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 32/140 (22%), Gaps = 1/140 (0%)

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
                F L   + +             +    L       R          L    +  +
Sbjct: 11  PIIRGFLLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGK 70

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
             + +   +             +  N      L  +P +G   A+AI E+        +V
Sbjct: 71  TMKKMFVLF-CMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSV 129

Query: 626 EALLKEVSPSIGRHEKNVSS 645
           + L K          K    
Sbjct: 130 DDLTKVKGIGPAVLAKLKDQ 149


>gi|116193565|ref|XP_001222595.1| hypothetical protein CHGG_06500 [Chaetomium globosum CBS 148.51]
 gi|88182413|gb|EAQ89881.1| hypothetical protein CHGG_06500 [Chaetomium globosum CBS 148.51]
          Length = 399

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706
           +    +  TG L    R      V ++GA +   +   T   +  +  G + EKA +L +
Sbjct: 159 LSGITIT-TGILPAAVREGLGAAVERIGAKIVDGVRIDTTHFVTTEGRGLQWEKANELNI 217

Query: 707 KIM 709
            I+
Sbjct: 218 PIV 220


>gi|67612623|ref|XP_667238.1| excision repair cross-complementing rodent repair
           deficiency,complementation group 1 [Cryptosporidium
           hominis TU502]
 gi|54658355|gb|EAL37009.1| excision repair cross-complementing rodent repair
           deficiency,complementation group 1 [Cryptosporidium
           hominis]
          Length = 224

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 10/62 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            +  +    + +L K++ S                     L ++  +G I A+ I E + 
Sbjct: 169 SLPRINKTDSENLLKHFGSISKVVNASE----------EELSKIQGIGPIKAKVISEVFS 218

Query: 618 NP 619
             
Sbjct: 219 TE 220


>gi|326389890|ref|ZP_08211454.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994158|gb|EGD52586.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 201

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKN 642
           N  I  N      L  +P +G + A+ I+EF +N  +   +E ++    + P +    K+
Sbjct: 137 NEKININTATKEELQTLPGIGPVTAERIIEFRENKGSFKKIEDIMNVPRIGPKMFEQIKD 196

Query: 643 V 643
            
Sbjct: 197 K 197


>gi|317123124|ref|YP_004103127.1| DNA integrity scanning, DisA, linker region [Thermaerobacter
           marianensis DSM 12885]
 gi|315593104|gb|ADU52400.1| DNA integrity scanning, DisA, linker region [Thermaerobacter
           marianensis DSM 12885]
          Length = 355

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +  +   +  +L +++ S                     L  V  +G + A+AI +  + 
Sbjct: 295 LPRLPVSVVENLVQHFGSLPRILAAT----------VEQLDDVEGIGSVRARAIKDGLRR 344

Query: 619 PRNICAVEA 627
            ++   +E 
Sbjct: 345 LQDQAFLER 353


>gi|293401160|ref|ZP_06645304.1| tail tape measure protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305286|gb|EFE46531.1| tail tape measure protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 1061

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 16  QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75
           + +++L++L+      ++   Q  K  I   +YDAL+R           L +        
Sbjct: 67  ETKEKLATLKTAAEQANE---QLQKGEITQEQYDALQREIVETEAELKRLEQQASTTNAT 123

Query: 76  NKIGGEMNLSLFKV 89
               G++   L  V
Sbjct: 124 LTKIGDVGSKLESV 137


>gi|222640898|gb|EEE69030.1| hypothetical protein OsJ_28011 [Oryza sativa Japonica Group]
          Length = 334

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 36  YQYSKPIILDSEYDALKRRCDA 57
           Y    PI+ D+E+D LK R   
Sbjct: 155 YVAGNPIMTDAEFDELKLRLRK 176


>gi|218201488|gb|EEC83915.1| hypothetical protein OsI_29970 [Oryza sativa Indica Group]
          Length = 326

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 36  YQYSKPIILDSEYDALKRRCDA 57
           Y    PI+ D+E+D LK R   
Sbjct: 147 YVAGNPIMTDAEFDELKLRLRK 168


>gi|215687350|dbj|BAG91915.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215692659|dbj|BAG88079.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737686|dbj|BAG96816.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 177

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 36 YQYSKPIILDSEYDALKRRCDA 57
          Y    PI+ D+E+D LK R   
Sbjct: 3  YVAGNPIMTDAEFDELKLRLRK 24


>gi|115477403|ref|NP_001062297.1| Os08g0526300 [Oryza sativa Japonica Group]
 gi|42407629|dbj|BAD08743.1| unknown protein [Oryza sativa Japonica Group]
 gi|42761407|dbj|BAD11572.1| unknown protein [Oryza sativa Japonica Group]
 gi|113624266|dbj|BAF24211.1| Os08g0526300 [Oryza sativa Japonica Group]
          Length = 329

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 36  YQYSKPIILDSEYDALKRRCDA 57
           Y    PI+ D+E+D LK R   
Sbjct: 155 YVAGNPIMTDAEFDELKLRLRK 176


>gi|309810827|ref|ZP_07704628.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
 gi|308435133|gb|EFP58964.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
          Length = 359

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +  + A I   L  ++ S Q+              D+  L+ V  VG+  A+A+ E    
Sbjct: 299 VPRLPAAIIDRLVDHFGSLQSLLAA----------DFDDLLTVDGVGESRARAVREGLSR 348

Query: 619 PRNICAVEA 627
                 +E 
Sbjct: 349 LAESSILER 357


>gi|118431455|ref|NP_147940.2| repair endonuclease XPF [Aeropyrum pernix K1]
 gi|116062779|dbj|BAA80433.2| repair endonuclease XPF [Aeropyrum pernix K1]
          Length = 248

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 10/63 (15%)

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +         +G   A  + + + S + F                 + +V  +G+  A+
Sbjct: 163 WQLYILQSFPGIGRRTAERILERFGSLERFFTASKA----------EISKVEGIGEKRAE 212

Query: 611 AIV 613
            I 
Sbjct: 213 EIK 215


>gi|61680877|pdb|2BGW|A Chain A, Xpf From Aeropyrum Pernix, Complex With Dna
 gi|61680878|pdb|2BGW|B Chain B, Xpf From Aeropyrum Pernix, Complex With Dna
          Length = 219

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 10/63 (15%)

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +         +G   A  + + + S + F                 + +V  +G+  A+
Sbjct: 159 WQLYILQSFPGIGRRTAERILERFGSLERFFTASKA----------EISKVEGIGEKRAE 208

Query: 611 AIV 613
            I 
Sbjct: 209 EIK 211


>gi|61680885|pdb|2BHN|A Chain A, Xpf From Aeropyrum Pernix
 gi|61680886|pdb|2BHN|B Chain B, Xpf From Aeropyrum Pernix
 gi|61680887|pdb|2BHN|C Chain C, Xpf From Aeropyrum Pernix
 gi|61680888|pdb|2BHN|D Chain D, Xpf From Aeropyrum Pernix
          Length = 214

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 10/63 (15%)

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610
            +         +G   A  + + + S + F                 + +V  +G+  A+
Sbjct: 152 WQLYILQSFPGIGRRTAERILERFGSLERFFTASKA----------EISKVEGIGEKRAE 201

Query: 611 AIV 613
            I 
Sbjct: 202 EIK 204


>gi|66475596|ref|XP_627614.1| ERCC1 excision repair 1; C-terminal HhH domain [Cryptosporidium
           parvum Iowa II]
 gi|46229292|gb|EAK90141.1| ERCC1 excision repair 1; C-terminal HhH domain [Cryptosporidium
           parvum Iowa II]
          Length = 240

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 10/62 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            +  +    + +L K++ S                     L ++  +G I A+ I E + 
Sbjct: 185 SLPRINKTDSENLLKHFGSISKVVNASE----------EELSKIQGIGPIKAKVISEIFS 234

Query: 618 NP 619
             
Sbjct: 235 TE 236


>gi|326333918|ref|ZP_08200149.1| competence protein CelA [Nocardioidaceae bacterium Broad-1]
 gi|325948279|gb|EGD40388.1| competence protein CelA [Nocardioidaceae bacterium Broad-1]
          Length = 297

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
           N      L  +P VG + AQAI+++        +V+ LL+
Sbjct: 240 NAASMEELETLPGVGPVTAQAIIDWRTTNGAFTSVDELLE 279


>gi|121705758|ref|XP_001271142.1| RNA Polymerase II CTD phosphatase Fcp1, putative [Aspergillus
           clavatus NRRL 1]
 gi|119399288|gb|EAW09716.1| RNA Polymerase II CTD phosphatase Fcp1, putative [Aspergillus
           clavatus NRRL 1]
          Length = 826

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 10/93 (10%)

Query: 649 NKKLVFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL- 704
              LVF+G L             +    GAV+S  ++RKT  ++ G N  +K+ +A +  
Sbjct: 514 GVVLVFSGVLPLGTDTQNADISLWTKSFGAVISTKINRKTTHLVAGRNRTAKVREATRYP 573

Query: 705 GVKIMNEEQFL------FLLQQYNTTLRIHDDD 731
            +KI+  +  L        L +    L +H DD
Sbjct: 574 NIKIVTTQWLLDTLTQWKRLDEEPYLLPVHPDD 606


>gi|317486174|ref|ZP_07945013.1| excinuclease ABC [Bilophila wadsworthia 3_1_6]
 gi|316922565|gb|EFV43812.1| excinuclease ABC [Bilophila wadsworthia 3_1_6]
          Length = 671

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 10/57 (17%)

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
            L I  VG   AR L  ++ +                     L  +P +G   A+A+
Sbjct: 616 LLRIPGVGKATARLLWDHFKALDAIIAATPA----------QLAAIPGIGPRKAEAL 662


>gi|288917081|ref|ZP_06411451.1| excinuclease ABC, C subunit [Frankia sp. EUN1f]
 gi|288351450|gb|EFC85657.1| excinuclease ABC, C subunit [Frankia sp. EUN1f]
          Length = 758

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           G+  +G    ++L + + S                     + +VP +G   A+AIV    
Sbjct: 643 GVPGLGDTRRKALLRQFGSVAKVRAAT----------AEEIAQVPGIGPRTAEAIVAALA 692


>gi|148270820|ref|YP_001245280.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Thermotoga petrophila RKU-1]
 gi|147736364|gb|ABQ47704.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotoga petrophila RKU-1]
          Length = 181

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%)

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
             N      L+ +P +G + AQ I+++ ++     +VE L           EK   
Sbjct: 48  DLNTASLEDLMSIPGIGPVKAQRIIDYRESHGGFSSVEELKNVSGIGEKTLEKISG 103


>gi|1709741|sp|Q11208|PARP_SARPE RecName: Full=Poly [ADP-ribose] polymerase; Short=PARP; AltName:
           Full=NAD(+) ADP-ribosyltransferase; Short=ADPRT;
           AltName: Full=Poly[ADP-ribose] synthase
 gi|538248|dbj|BAA03943.1| poly(ADP-ribose) polymerase [Sarcophaga peregrina]
          Length = 996

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 36/62 (58%), Gaps = 7/62 (11%)

Query: 667 QEYVTQLGAVVSAILSRKTDIII-----VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
           ++ +++LG  VS  ++ KT +++     V +   S+++KA+ LG+ ++  E +L  ++Q 
Sbjct: 405 KDRISKLGGTVSTKITEKTTVVLSTPEEV-ERMSSRMKKAKTLGLHVI-PEDYLEAVEQN 462

Query: 722 NT 723
             
Sbjct: 463 GA 464


>gi|116668758|ref|YP_829691.1| DNA integrity scanning protein DisA [Arthrobacter sp. FB24]
 gi|116608867|gb|ABK01591.1| protein of unknown function DUF147 [Arthrobacter sp. FB24]
          Length = 358

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 10/72 (13%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           G++ V   +A  L  ++   Q                   L+ V  +GD  A+ + E   
Sbjct: 297 GLKAVPKAVADRLVDHFGGLQYLMAAT----------IDDLMTVDGIGDQRARTVREGLS 346

Query: 618 NPRNICAVEALL 629
                  ++  L
Sbjct: 347 RMAEASLLDRFL 358


>gi|170046595|ref|XP_001850844.1| microcephalin [Culex quinquefasciatus]
 gi|167869331|gb|EDS32714.1| microcephalin [Culex quinquefasciatus]
          Length = 953

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%)

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710
              ++ V  LGA V+  L + T  +I  D   S  +KA+++ + +++
Sbjct: 221 DGIKDVVASLGAKVNDKLYKDTTHVIFKDGLMSTYQKAKKMNIPVVS 267


>gi|149634118|ref|XP_001506606.1| PREDICTED: similar to laminin, beta 2 (laminin S) [Ornithorhynchus
           anatinus]
          Length = 1485

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 50/521 (9%), Positives = 104/521 (19%), Gaps = 66/521 (12%)

Query: 157 GHSGED---VSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND------EMIA 207
           G  G       AC          L  ++      R   + S+ D                
Sbjct: 506 GTYGFGPSGCRACQCNPEGTLSSLCDSVSGQCPCRPGAFGSRCDHCQPGHWGFPRCRPCH 565

Query: 208 VGRKPYAN-PRNAASGILRRLNPTDITRYLNFFVHG-----LGKTSEIFAKGQYEMLQKM 261
                     R  A    R     D         +G      G         +    ++ 
Sbjct: 566 CNGHAEECDQRTGACQACRDHTAGDRCDRCVAGFYGNPVLTSGGHCRPCPCPEGPGSRRH 625

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321
                  +    Q              +        +      +         +      
Sbjct: 626 FAASCHQDGHSHQVICHCQPGHTGPRCEECAPGHYGNPSQAGGRCQPCQCSNNIDPTDPE 685

Query: 322 PRWMISHKFAEKQASTRLLDI-DIQIGRTGIL-TPVARLEPVNIGGALITNATLHNEDYI 379
                + +       +        + G  G       R    N  G     +   +++  
Sbjct: 686 ACDRRTGQCQRCLYHSEGPHCAYCRPGYYGQAAHHSCRRCSCNFLGT--ERSQCPSQEEC 743

Query: 380 KGLDASGK-----VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434
               +SG+      ++G    R         +G+          +   P    F+    C
Sbjct: 744 HCDQSSGQCPCLPNIQGQNCDRCAPNFWNLASGQGCQPCDCHPSHSVSPSCNEFTGQCHC 803

Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494
                        +      + +C               H  +       G+   + D  
Sbjct: 804 RAGFGGRACTDCQENHWGDPSQQCRACDCDPRGIETLQCHRTTGHCNCRPGVSGVRCDQC 863

Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554
            +     F I  P                     G  D  V +L          + E  +
Sbjct: 864 ARGFSGTFPICHPCHQCF----------------GDWDRVVQDLATRTRHLGQRAQE--L 905

Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV-----PLVGDIIA 609
              G         R L +   + Q      N            L+++       +G+   
Sbjct: 906 QQSGAIGAFERNFRLLEEKLGTVQGIVSARNTTATA----ITQLMKITEELRSGIGEAT- 960

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650
                          +  L +E++ +   +  N +  +   
Sbjct: 961 -------------ERLNQLERELTVAQDENF-NSNHALSGL 987


>gi|30519993|ref|NP_848758.1| Fanconi anemia-associated protein of 24 kDa [Mus musculus]
 gi|81913153|sp|Q8BHL6|FAP24_MOUSE RecName: Full=Fanconi anemia-associated protein of 24 kDa
 gi|26327417|dbj|BAC27452.1| unnamed protein product [Mus musculus]
 gi|26333665|dbj|BAC30550.1| unnamed protein product [Mus musculus]
 gi|26349711|dbj|BAC38495.1| unnamed protein product [Mus musculus]
 gi|66794596|gb|AAH96687.1| RIKEN cDNA C230052I12 gene [Mus musculus]
 gi|148671072|gb|EDL03019.1| RIKEN cDNA C230052I12 [Mus musculus]
          Length = 221

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 42/148 (28%), Gaps = 12/148 (8%)

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
            S     I     Q  + +F +      + +   +  +  + + S   I  +        
Sbjct: 83  SSHLQGIIIVEKTQMSEQYFPAVQKFTVLDLGMVLLPVASQSEASCLIIHLVQEQTREPS 142

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
            N +    +     L        I  VG   A  L + + S Q            +N   
Sbjct: 143 KNPFLRKKRSMLSELSLVQTVQQIPGVGKVKAPLLLQKFPSIQQL----------SNASV 192

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNIC 623
             L  V  VG   AQ I  F+  P+   
Sbjct: 193 QELEEV--VGPAAAQQIHTFFTQPKRQQ 218


>gi|288560937|ref|YP_003424423.1| DEAD/DEAH box helicase domain-containing protein
           [Methanobrevibacter ruminantium M1]
 gi|288543647|gb|ADC47531.1| DEAD/DEAH box helicase domain-containing protein
           [Methanobrevibacter ruminantium M1]
          Length = 690

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
           +G++ +G + AR+L   +   ++      N           L +V  +G  +A++I  F
Sbjct: 640 IGVKRLGRKRARALVNTFG--EDLRPVSEN----------ELQKVDGIGPKLAKSIRNF 686


>gi|158291429|ref|XP_312938.3| AGAP003230-PA [Anopheles gambiae str. PEST]
 gi|157017770|gb|EAA08394.3| AGAP003230-PA [Anopheles gambiae str. PEST]
          Length = 1000

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 8/93 (8%)

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
            KE         K     + + + V  G      + + +  + +LG  V   ++  T  I
Sbjct: 370 KKEEELPSEPKIKREKPPLYDMEFVILGKTAT-PKDQLKLKIQKLGGKVVTKIASHTAAI 428

Query: 689 I-----VGDNPGSKLEKAQQLGVKIMNEEQFLF 716
           I     V +  GS++ +A++L ++++  E FL 
Sbjct: 429 ISTPEEV-ERLGSRMAEAKELQIQVV-PEDFLE 459


>gi|147920338|ref|YP_685889.1| Hef nuclease [uncultured methanogenic archaeon RC-I]
 gi|110621285|emb|CAJ36563.1| putative type III restriction-modification system, restriction
           subunit [uncultured methanogenic archaeon RC-I]
          Length = 792

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           I  VG  IA++L +++ S +  A+               L  V  VG   A  I E
Sbjct: 737 ISEVGPVIAKNLLRHFGSVKKIAEA----------SAEELTAVERVGPKTAARIRE 782


>gi|325961775|ref|YP_004239681.1| nucleic-acid-binding protein (contains the HHH domain)
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323467862|gb|ADX71547.1| putative nucleic-acid-binding protein (contains the HHH domain)
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 358

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 10/72 (13%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           G++ V   +A  L  ++   Q                   L+ V  +GD  A+ + E   
Sbjct: 297 GLKAVPKAVADRLVDHFGGLQFLMAAT----------IDDLMTVDGIGDQRARTVREGLS 346

Query: 618 NPRNICAVEALL 629
                  ++  L
Sbjct: 347 RMAEASLLDRFL 358


>gi|313764601|gb|EFS35965.1| comEA protein [Propionibacterium acnes HL013PA1]
 gi|313792291|gb|EFS40392.1| comEA protein [Propionibacterium acnes HL110PA1]
 gi|313801760|gb|EFS42994.1| comEA protein [Propionibacterium acnes HL110PA2]
 gi|313816138|gb|EFS53852.1| comEA protein [Propionibacterium acnes HL059PA1]
 gi|313827959|gb|EFS65673.1| comEA protein [Propionibacterium acnes HL063PA2]
 gi|313838590|gb|EFS76304.1| comEA protein [Propionibacterium acnes HL086PA1]
 gi|314915595|gb|EFS79426.1| comEA protein [Propionibacterium acnes HL005PA4]
 gi|314918449|gb|EFS82280.1| comEA protein [Propionibacterium acnes HL050PA1]
 gi|314919938|gb|EFS83769.1| comEA protein [Propionibacterium acnes HL050PA3]
 gi|314931952|gb|EFS95783.1| comEA protein [Propionibacterium acnes HL067PA1]
 gi|314955819|gb|EFT00219.1| comEA protein [Propionibacterium acnes HL027PA1]
 gi|314958301|gb|EFT02404.1| comEA protein [Propionibacterium acnes HL002PA1]
 gi|314962950|gb|EFT07050.1| comEA protein [Propionibacterium acnes HL082PA1]
 gi|314967976|gb|EFT12075.1| comEA protein [Propionibacterium acnes HL037PA1]
 gi|315077593|gb|EFT49649.1| comEA protein [Propionibacterium acnes HL053PA2]
 gi|315098392|gb|EFT70368.1| comEA protein [Propionibacterium acnes HL059PA2]
 gi|315101252|gb|EFT73228.1| comEA protein [Propionibacterium acnes HL046PA1]
 gi|315108476|gb|EFT80452.1| comEA protein [Propionibacterium acnes HL030PA2]
 gi|327450924|gb|EGE97578.1| comEA protein [Propionibacterium acnes HL087PA3]
 gi|327452997|gb|EGE99651.1| comEA protein [Propionibacterium acnes HL092PA1]
 gi|327453726|gb|EGF00381.1| comEA protein [Propionibacterium acnes HL083PA2]
 gi|328754346|gb|EGF67962.1| comEA protein [Propionibacterium acnes HL087PA1]
 gi|328754924|gb|EGF68540.1| comEA protein [Propionibacterium acnes HL025PA2]
          Length = 283

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 21/61 (34%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              +  N  +   L  +  VG ++A  I+ + Q      +V+ L +         EK   
Sbjct: 220 KAPVNLNTANQSELETIDGVGPVMAGKIMAWRQEHGQFASVDQLREISGIGAKTFEKIKP 279

Query: 645 S 645
            
Sbjct: 280 H 280


>gi|220911123|ref|YP_002486432.1| DNA integrity scanning protein DisA [Arthrobacter chlorophenolicus
           A6]
 gi|219858001|gb|ACL38343.1| protein of unknown function DUF147 [Arthrobacter chlorophenolicus
           A6]
          Length = 358

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 10/72 (13%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           G++ V   +A  L  ++   Q                   L+ V  +GD  A+ + E   
Sbjct: 297 GLKAVPKAVADRLVDHFGGLQFLMAAT----------IDDLMTVDGIGDQRARTVREGLS 346

Query: 618 NPRNICAVEALL 629
                  ++  L
Sbjct: 347 RMAEASLLDRFL 358


>gi|327358124|gb|EGE86981.1| RNA Polymerase II CTD phosphatase Fcp1 [Ajellomyces dermatitidis
           ATCC 18188]
          Length = 839

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 653 VFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKI 708
           VF+G L             +    GA +S  +S +T  ++ G N  +K+ +A +   +KI
Sbjct: 429 VFSGVLPLGTDTQNADISLWAKSFGAAISTKISSRTTHLVAGRNRTAKVREATRYPNIKI 488

Query: 709 MNEEQFL------FLLQQYNTTLRIHDDD 731
           +  +  L        + +    + +H +D
Sbjct: 489 VTVQWLLDSITQWKRIDEEPYLVPVHPED 517


>gi|239606973|gb|EEQ83960.1| RNA Polymerase II CTD phosphatase Fcp1 [Ajellomyces dermatitidis
           ER-3]
          Length = 901

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 653 VFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKI 708
           VF+G L             +    GA +S  +S +T  ++ G N  +K+ +A +   +KI
Sbjct: 501 VFSGVLPLGTDTQNADISLWAKSFGAAISTKISSRTTHLVAGRNRTAKVREATRYPNIKI 560

Query: 709 MNEEQFL------FLLQQYNTTLRIHDDD 731
           +  +  L        + +    + +H +D
Sbjct: 561 VTVQWLLDSITQWKRIDEEPYLVPVHPED 589


>gi|256825551|ref|YP_003149511.1| DNA uptake protein [Kytococcus sedentarius DSM 20547]
 gi|256688944|gb|ACV06746.1| DNA uptake protein [Kytococcus sedentarius DSM 20547]
          Length = 305

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
           +  N  D  +L  +P VG + A+ I+ + +       V+ L++
Sbjct: 244 LDLNTADQAALEELPGVGPVTAEHILAWRKENGQFTTVDELME 286


>gi|327296037|ref|XP_003232713.1| RNA Polymerase II CTD phosphatase [Trichophyton rubrum CBS 118892]
 gi|326465024|gb|EGD90477.1| RNA Polymerase II CTD phosphatase [Trichophyton rubrum CBS 118892]
          Length = 836

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 653 VFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKI 708
           VF+G L             +    GA +++ ++ +T  ++ G N  +K+ +A +   +KI
Sbjct: 517 VFSGVLPLGTDTQNADISLWAKSFGATITSKINSRTTHLVAGRNRTAKVREATRYPKIKI 576

Query: 709 MNEEQFL------FLLQQYNTTLRIHDDD 731
           +  +  L        L +    + +H DD
Sbjct: 577 VTVQWLLDCMIQWKHLDEEPYLVPVHPDD 605


>gi|188584801|ref|YP_001916346.1| protein of unknown function DUF147 [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349488|gb|ACB83758.1| protein of unknown function DUF147 [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 363

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +N  +   ++    N     L  V  +G+I A+ I +  +  R    ++ 
Sbjct: 311 VENVVERFGDLRGILNASIEELDDVEGIGEIRARVIKDGLRRIREQALIDR 361


>gi|218961104|ref|YP_001740879.1| Excinuclease ABC, C subunit [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729761|emb|CAO80673.1| Excinuclease ABC, C subunit [Candidatus Cloacamonas
           acidaminovorans]
          Length = 601

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +G +    L K   S +N A            +  +L ++  +G  IA+ I   + 
Sbjct: 550 SISGIGEKNKFLLLKELGSVENIANA----------NRETLSKIKGIGPKIAEKIYNHFH 599


>gi|304316131|ref|YP_003851276.1| excinuclease ABC subunit C [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777633|gb|ADL68192.1| excinuclease ABC, C subunit [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 617

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 6/45 (13%), Positives = 17/45 (37%)

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
              +   +    I    N     L +V  + +  A A+ +++++ 
Sbjct: 573 KRMKALFEAFKTIDDIKNATVEELKKVEGMNEKAANAVYDYFRSD 617


>gi|84488930|ref|YP_447162.1| helicase [Methanosphaera stadtmanae DSM 3091]
 gi|84372249|gb|ABC56519.1| predicted helicase [Methanosphaera stadtmanae DSM 3091]
          Length = 694

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 12/61 (19%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           G++ +G + AR +   + +              N+     L R+  +G++ A+ I+EFY 
Sbjct: 644 GVKRLGRQRARKVVDIFGN------------NLNDVKITELTRIDGIGEVTARNIIEFYN 691

Query: 618 N 618
           N
Sbjct: 692 N 692


>gi|28211670|ref|NP_782614.1| come operon protein 1 [Clostridium tetani E88]
 gi|28204112|gb|AAO36551.1| come operon protein 1 [Clostridium tetani E88]
          Length = 188

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
            + I  N      L  +P +GD+ A+ IV + +      ++E  +K +     +  + + 
Sbjct: 124 KDKINLNKASKEELKSIPGIGDVTAEKIVNYRKENNGFNSIEE-IKNIDRIGEKTFEKIK 182

Query: 645 SEIE 648
            +++
Sbjct: 183 DKLD 186


>gi|325124552|gb|ADY84075.1| competence protein ComEA [Acinetobacter calcoaceticus PHEA-2]
          Length = 68

 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
             + +  I  N  +   L ++  +G+  AQAIVE+ Q       ++             E
Sbjct: 1   MTDSSGQIHLNQANIDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFE 60

Query: 641 KNVS 644
           KN S
Sbjct: 61  KNKS 64


>gi|323704240|ref|ZP_08115819.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536306|gb|EGB26078.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 205

 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRH 639
              N  I  N      L  +P +G++ AQ I++F +   N   +E ++    + P +   
Sbjct: 138 NAPNGKININTATKEELDTLPGIGEVTAQRIIDFREQHGNFQRIEDIMNVSRIGPKLFEQ 197

Query: 640 EKNV 643
            K+ 
Sbjct: 198 IKDK 201


>gi|313837329|gb|EFS75043.1| comEA protein [Propionibacterium acnes HL037PA2]
 gi|314927997|gb|EFS91828.1| comEA protein [Propionibacterium acnes HL044PA1]
 gi|314971713|gb|EFT15811.1| comEA protein [Propionibacterium acnes HL037PA3]
 gi|328907123|gb|EGG26889.1| comEA protein [Propionibacterium sp. P08]
          Length = 280

 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 21/61 (34%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              +  N  +   L  +  VG ++A  I+ + Q      +V+ L +         EK   
Sbjct: 217 KAQVNLNTANQSELETIDGVGPVMAGKIMAWRQEHGQFASVDQLREISGIGAKTFEKIKP 276

Query: 645 S 645
            
Sbjct: 277 H 277


>gi|330924956|ref|XP_003300850.1| hypothetical protein PTT_12211 [Pyrenophora teres f. teres 0-1]
 gi|311324811|gb|EFQ91054.1| hypothetical protein PTT_12211 [Pyrenophora teres f. teres 0-1]
          Length = 838

 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
                 +  TG     QR   QE V   G      L++    +I     G K E A   G
Sbjct: 110 TFFGLNICLTGFDNPDQRRNIQEKVDANGGDYHGDLTKSVTHLIAATPSGKKYEHALNWG 169

Query: 706 VKIMNEEQFLFLLQQ--------YNTTLRIHD 729
           +KI+  E     L++        YN TL I +
Sbjct: 170 IKIVALEWLEQSLERGMVLDETCYNPTLPIEE 201


>gi|238917912|ref|YP_002931429.1| excinuclease ABC subunit C [Eubacterium eligens ATCC 27750]
 gi|259710340|sp|C4Z4U3|UVRC_EUBE2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|238873272|gb|ACR72982.1| excinuclease ABC subunit C [Eubacterium eligens ATCC 27750]
          Length = 612

 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +G    ++L K++L  +   Q               L++   + + +A+ I +F+ 
Sbjct: 563 SIEGIGPVRRKALMKHFLDIEKIRQA----------SVDELMKADGITENVAENIYKFFH 612


>gi|229817619|ref|ZP_04447901.1| hypothetical protein BIFANG_02887 [Bifidobacterium angulatum DSM
           20098]
 gi|229785408|gb|EEP21522.1| hypothetical protein BIFANG_02887 [Bifidobacterium angulatum DSM
           20098]
          Length = 217

 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           +      + S A+ + +     Q    ++  N      L  +  +G + A+ I+++ Q  
Sbjct: 134 QSQSDSTSASQAERFST-----QSDGGLVNLNTATLEELDSISGIGPVTARKILDYRQRI 188

Query: 620 RNICAVEALLKEVSPSIGRHEK 641
               +V+ LL+     +   EK
Sbjct: 189 GMFSSVDQLLEVSGIGVKTLEK 210


>gi|312116178|ref|YP_004013774.1| excinuclease ABC, C subunit [Rhodomicrobium vannielii ATCC 17100]
 gi|311221307|gb|ADP72675.1| excinuclease ABC, C subunit [Rhodomicrobium vannielii ATCC 17100]
          Length = 689

 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ +           GI  +G    R+L K++ S            A +    
Sbjct: 615 HRFAIGSHRAKRKKAMTENELDGIPGIGPTRKRALLKHFGS----------AKAVSRAGL 664

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPR 620
             L  V  +   +AQ I ++Y + +
Sbjct: 665 SDLRAVDGISAAMAQQIYDWYNDRK 689


>gi|281413115|ref|YP_003347194.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotoga naphthophila RKU-10]
 gi|281374218|gb|ADA67780.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotoga naphthophila RKU-10]
          Length = 181

 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 19/75 (25%)

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648
             N      L+ +P +G + AQ I+++                   S     KNVS    
Sbjct: 48  ELNTASLEDLMSIPGIGPVKAQRIIDY------------RESHGGFSSVEELKNVSGI-- 93

Query: 649 NKKLVFTGTLQKIQR 663
            +K     TL+KI R
Sbjct: 94  GEK-----TLEKISR 103


>gi|254456104|ref|ZP_05069533.1| putative dehydrogenase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083106|gb|EDZ60532.1| putative dehydrogenase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 342

 Score = 39.0 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 9/44 (20%)

Query: 644 SSEIENKKLVF--TGTL-QKIQRHKAQEYVTQLGAVVSAILSRK 684
           S+ I  K +V   TG+L   +    A+ ++  LGA V   +++K
Sbjct: 158 SNPIAGKTVVVVGTGSLGSSM----AK-HIKSLGANVIG-VNKK 195


>gi|169600911|ref|XP_001793878.1| hypothetical protein SNOG_03310 [Phaeosphaeria nodorum SN15]
 gi|160705543|gb|EAT90041.2| hypothetical protein SNOG_03310 [Phaeosphaeria nodorum SN15]
          Length = 810

 Score = 39.0 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 17/98 (17%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTG---------TLQKIQRHKAQEYVTQLGAV 676
            AL   +        +     ++   +VF+G         T           ++   GA 
Sbjct: 507 RALSDIIPDVAEIMPRIKEEVLDGVVVVFSGIIPLGVDVQT------SDYALWIRSFGAE 560

Query: 677 VSAILSRKTDIIIVGDN-PGSKLEKAQQLG-VKIMNEE 712
           V+  ++R+T  +I   +   +K+++A +   +KI+N E
Sbjct: 561 VTTSVNRRTTHVIANPDRKTTKVKQAARYQHIKIVNPE 598


>gi|328773391|gb|EGF83428.1| hypothetical protein BATDEDRAFT_36503 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 257

 Score = 39.0 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 656 GTLQKIQR-HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           G+L K        E + ++GA  +  L+     ++     G K E+A +L + I+   +F
Sbjct: 178 GSLSKDSDVDTLIELLDRIGAKYTDDLTSDNTHLVCTVPKGPKYERALELNIPIVTP-EF 236

Query: 715 LF 716
           L 
Sbjct: 237 LK 238


>gi|293398290|ref|ZP_06642482.1| DNA transport competence protein [Neisseria gonorrhoeae F62]
 gi|291611296|gb|EFF40379.1| DNA transport competence protein [Neisseria gonorrhoeae F62]
          Length = 141

 Score = 39.0 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 20/62 (32%)

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
               +  N      L  +P +G   A+AI E+        +V+ L+K          K  
Sbjct: 59  SLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLIKVKGIGPAVLAKLK 118

Query: 644 SS 645
             
Sbjct: 119 DQ 120


>gi|260439692|ref|ZP_05793508.1| ComEA-related protein [Neisseria gonorrhoeae DGI2]
 gi|291042936|ref|ZP_06568675.1| DNA transport competence protein [Neisseria gonorrhoeae DGI2]
 gi|291013143|gb|EFE05111.1| DNA transport competence protein [Neisseria gonorrhoeae DGI2]
 gi|317164625|gb|ADV08166.1| ComE1 [Neisseria gonorrhoeae TCDC-NG08107]
 gi|317164978|gb|ADV08519.1| ComE1 [Neisseria gonorrhoeae TCDC-NG08107]
 gi|317165078|gb|ADV08619.1| ComE1 [Neisseria gonorrhoeae TCDC-NG08107]
 gi|317165312|gb|ADV08853.1| ComE1 [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 131

 Score = 39.0 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 20/62 (32%)

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
               +  N      L  +P +G   A+AI E+        +V+ L+K          K  
Sbjct: 49  SLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLIKVKGIGPAVLAKLK 108

Query: 644 SS 645
             
Sbjct: 109 DQ 110


>gi|59801540|ref|YP_208252.1| ComE1 [Neisseria gonorrhoeae FA 1090]
 gi|240122228|ref|ZP_04735190.1| ComE1 [Neisseria gonorrhoeae PID24-1]
 gi|10505052|gb|AAG18334.1|AF268314_1 ComE [Neisseria gonorrhoeae]
 gi|10505056|gb|AAG18336.1|AF268315_1 ComE [Neisseria gonorrhoeae]
 gi|10505059|gb|AAG18337.1|AF268316_1 ComE [Neisseria gonorrhoeae]
 gi|10505061|gb|AAG18338.1|AF268317_1 ComE [Neisseria gonorrhoeae]
 gi|59718435|gb|AAW89840.1| DNA-binding competence protein 1 [Neisseria gonorrhoeae FA 1090]
          Length = 99

 Score = 39.0 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 20/62 (32%)

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
               +  N      L  +P +G   A+AI E+        +V+ L+K          K  
Sbjct: 17  SLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLIKVKGIGPAVLAKLK 76

Query: 644 SS 645
             
Sbjct: 77  DQ 78


>gi|326475449|gb|EGD99458.1| RNA Polymerase II CTD phosphatase [Trichophyton tonsurans CBS
           112818]
          Length = 866

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 653 VFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKI 708
           VF+G L             +    GA +++ ++ +T  ++ G N  +K+ +A +   +KI
Sbjct: 547 VFSGVLPLGTDTQNADISLWAKSFGATITSKINSRTTHLVAGRNRTAKVREATRYTKIKI 606

Query: 709 MNEEQFL------FLLQQYNTTLRIHDDD 731
           +  +  L        L +    + +H DD
Sbjct: 607 VTVQWLLDCMIQWKHLDEEPYLVPVHPDD 635


>gi|311029021|ref|ZP_07707111.1| DNA integrity scanning protein DisA [Bacillus sp. m3-13]
          Length = 357

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +N      N+    N     L  V  +G++ A+ I E  +  ++   ++ 
Sbjct: 305 IENLVCRFWNLKQILNATVEELDDVDGIGEVRARKIKEGLKRIQDQLQIDR 355


>gi|219683758|ref|YP_002470141.1| DNA-binding protein [Bifidobacterium animalis subsp. lactis AD011]
 gi|219621408|gb|ACL29565.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis AD011]
          Length = 236

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 25/67 (37%)

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
            S      + + ++  N  D   L  +  +G + A  I+E+        +++ L+     
Sbjct: 162 PSPSASDNKQDTLVNINTADEAQLQEIKGIGPVTAARIIEYRTQHGAFASLDDLVNVPGI 221

Query: 635 SIGRHEK 641
            +   EK
Sbjct: 222 GMKTVEK 228


>gi|183601709|ref|ZP_02963079.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241190793|ref|YP_002968187.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196199|ref|YP_002969754.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183219315|gb|EDT89956.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249185|gb|ACS46125.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250753|gb|ACS47692.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|289178529|gb|ADC85775.1| COME operon protein 1 [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295793782|gb|ADG33317.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 258

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 25/67 (37%)

Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634
            S      + + ++  N  D   L  +  +G + A  I+E+        +++ L+     
Sbjct: 184 PSPSASDNKQDTLVNINTADEAQLQEIKGIGPVTAARIIEYRTQHGAFASLDDLVNVPGI 243

Query: 635 SIGRHEK 641
            +   EK
Sbjct: 244 GMKTVEK 250


>gi|260907599|ref|ZP_05915921.1| DNA polymerase III, epsilon subunit [Brevibacterium linens BL2]
          Length = 65

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 672 QLGAVVSAILSRKTDIIIVGDN---PGSKLEKAQQLGVKIMNEEQFLFLL 718
           Q G VV   +++K D+++  D     G K  KA++ G+ I++E Q    L
Sbjct: 3   QAGFVVHPAVTKKVDLVMAEDEDSLSG-KARKARKYGIPILSEVQMENYL 51


>gi|188024469|ref|ZP_02997117.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 7 str. ATCC 27819]
 gi|188018579|gb|EDU56619.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 7 str. ATCC 27819]
          Length = 1442

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 540  DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595
            +  +K R+   +     L ++ +   +   LA+ +     S +        I   NN   
Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQNNAII 1378

Query: 596  LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
               + +  +G+ +A +I+E  +N +    +E L  
Sbjct: 1379 PPFVAIQGLGETVANSIIEA-RNQKAFSTIEDLKN 1412


>gi|189199660|ref|XP_001936167.1| subunit of DNA polymerase II [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187983266|gb|EDU48754.1| subunit of DNA polymerase II [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 811

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
                K+  TG     QR   Q+ V   G      L++    +I     G K E A   G
Sbjct: 110 TFSGLKICLTGFDNPDQRKSIQDKVDANGGEYHGDLTKSVTHLIAATPSGKKYEHALNWG 169

Query: 706 VKIMNEEQFLFLLQQ--------YNTTLRIHD 729
           +KI+  E     L++        YN TL + +
Sbjct: 170 MKIVALEWLEQSLERGMVLEETYYNPTLPVEE 201


>gi|171920838|ref|ZP_02932008.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 13 str. ATCC 33698]
 gi|171903036|gb|EDT49325.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 13 str. ATCC 33698]
          Length = 1442

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 540  DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595
            +  +K R+   +     L ++ +   +   LA+ +     S +        I   NN   
Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQNNAII 1378

Query: 596  LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
               + +  +G+ +A +I+E  +N +    +E L  
Sbjct: 1379 PPFVAIQGLGETVANSIIEA-RNQKAFSTIEDLKN 1412


>gi|188524415|ref|ZP_03004436.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 12 str. ATCC 33696]
 gi|198273773|ref|ZP_03206307.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 4 str. ATCC 27816]
 gi|195659873|gb|EDX53253.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 12 str. ATCC 33696]
 gi|198249528|gb|EDY74310.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 4 str. ATCC 27816]
          Length = 1442

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 540  DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595
            +  +K R+   +     L ++ +   +   LA+ +     S +        I   NN   
Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQNNAII 1378

Query: 596  LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
               + +  +G+ +A +I+E  +N +    +E L  
Sbjct: 1379 PPFVAIQGLGETVANSIIEA-RNQKAFSTIEDLKN 1412


>gi|188518224|ref|ZP_03003759.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 11 str. ATCC 33695]
 gi|188998138|gb|EDU67235.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 11 str. ATCC 33695]
          Length = 1442

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 540  DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595
            +  +K R+   +     L ++ +   +   LA+ +     S +        I   NN   
Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQNNAII 1378

Query: 596  LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
               + +  +G+ +A +I+E  +N +    +E L  
Sbjct: 1379 PPFVAIQGLGETVANSIIEA-RNQKAFSTIEDLKN 1412


>gi|157118156|ref|XP_001659035.1| EGF repeat molecule, putative [Aedes aegypti]
 gi|108875803|gb|EAT40028.1| EGF repeat molecule, putative [Aedes aegypti]
          Length = 996

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 34/336 (10%), Positives = 64/336 (19%), Gaps = 12/336 (3%)

Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224
                         LN        G+   S     A     I    +   N        +
Sbjct: 239 HNTYGYNCSEVCRCLNGAVCDSATGKCSCSAGWMGADCGLRICPDDRFGENCTGQCECAV 298

Query: 225 RRLNPTDITRYLNFFVHGLGKTSEIFAKG-----QYEMLQKMRCLGFPVNNGVRQANTFH 279
                            G   T            Q  ++        P N+     N   
Sbjct: 299 NNTKMCHPWTGKCHCNPGWSSTLCDRPCPFLRYGQDCLIHCNCKNNSPCNHIDGTCNCIA 358

Query: 280 GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM--ISHKFAEKQAST 337
           G      E +    T   +       ++  +   + G+   +P W      +  +     
Sbjct: 359 GYHGENCEEQCSNGTYGQNCSQKCECMNGATCAPETGQCFCAPGWQGIRCDRPCDTHRYG 418

Query: 338 RLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRV 397
           +           G+  PV        G          +        +          +  
Sbjct: 419 KDCTERCNCSNNGVCNPVNGQCTCPAGWTGERCDKKCDSGRFGQNCSQTCDCNLEHTLAC 478

Query: 398 GDRV--LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455
                  +  A E      +I     +    P +    C    +    +     G     
Sbjct: 479 NATTGKCICNA-EWGESCNEICTCHNNSSCDPITGDCICSRGWTGPTCNEPCPDGFFG-- 535

Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491
           H C      S    + +    S     I    +   
Sbjct: 536 HGCKERCPVSNTTCDHITGKYSCRPGYIGTTCEHPC 571


>gi|5051417|emb|CAB44958.1| ComEA protein [Neisseria meningitidis]
          Length = 170

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 32/140 (22%), Gaps = 1/140 (0%)

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
                F L   + +             +    L       R          L    +  +
Sbjct: 11  PIIRGFLLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGK 70

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625
             + +   +             +  N      L  +P +G   A+AI E+        +V
Sbjct: 71  TMKKMFVLF-CMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSV 129

Query: 626 EALLKEVSPSIGRHEKNVSS 645
           + L K          K    
Sbjct: 130 DDLTKVKGIGPAVLAKLKDQ 149


>gi|89100805|ref|ZP_01173657.1| ComEA [Bacillus sp. NRRL B-14911]
 gi|89084451|gb|EAR63600.1| ComEA [Bacillus sp. NRRL B-14911]
          Length = 136

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
           + ++  N+     L  +P +G   A AI+E+ +      ++E L++         EK
Sbjct: 72  DGMVNINSAGSEELQDIPGIGPSKAAAIIEYRETEGPFQSLEDLMQISGIGEKTFEK 128


>gi|331268616|ref|YP_004395108.1| exonuclease ABC subunit C [Clostridium botulinum BKT015925]
 gi|329125166|gb|AEB75111.1| exonuclease ABC, C subunit [Clostridium botulinum BKT015925]
          Length = 622

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 27/64 (42%), Gaps = 11/64 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I ++G +  + L + + S  N  +            +  L+    + +  A++I+++++
Sbjct: 569 DIPNIGIKRRKELLQKFGSIDNIKKA----------SYDKLLSTDSINEKAAKSIIDYFR 618

Query: 618 NPRN 621
              N
Sbjct: 619 -KHN 621


>gi|297624197|ref|YP_003705631.1| excinuclease ABC subunit C [Truepera radiovictrix DSM 17093]
 gi|297165377|gb|ADI15088.1| excinuclease ABC, C subunit [Truepera radiovictrix DSM 17093]
          Length = 618

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 19/44 (43%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621
                  ++I    +     L R+P +G + A+A+V F+    N
Sbjct: 553 DALLARFSSIDELKSAGVDELARIPGMGRVAAEAVVAFFSAFDN 596


>gi|313890729|ref|ZP_07824354.1| comEA protein [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120830|gb|EFR43944.1| comEA protein [Streptococcus pseudoporcinus SPIN 20026]
          Length = 194

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
            + I++ I  N      L ++P +G   A+ I++  ++      +E LLK         E
Sbjct: 126 KESIDSKININTAKVEDLTKIPGIGAKRAKEIIDVRESQGGFKKLEDLLKISGIGQKTLE 185

Query: 641 KNVS 644
           K   
Sbjct: 186 KLKD 189


>gi|302657133|ref|XP_003020296.1| hypothetical protein TRV_05607 [Trichophyton verrucosum HKI 0517]
 gi|291184115|gb|EFE39678.1| hypothetical protein TRV_05607 [Trichophyton verrucosum HKI 0517]
          Length = 865

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 653 VFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKI 708
           VF+G L             +    GA +++ ++ +T  ++ G N  +K+ +A +   +KI
Sbjct: 546 VFSGVLPLGTDTQNADISLWAKSFGATITSKINSRTTHLVAGRNRTAKVREATRYPKIKI 605

Query: 709 MNEEQFL------FLLQQYNTTLRIHDDD 731
           +  +  L        L +    + +H DD
Sbjct: 606 VTVQWLLDCMIQWKHLDEEPYLVPVHPDD 634


>gi|194895361|ref|XP_001978237.1| GG17807 [Drosophila erecta]
 gi|190649886|gb|EDV47164.1| GG17807 [Drosophila erecta]
          Length = 1424

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 19/80 (23%)

Query: 645 SEIENKKLVFT---GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI------IIVGDNPG 695
             ++   +V +   G L+   R         LGA     ++ KT I      ++     G
Sbjct: 704 QPLKGMTIVVSIYAG-LE---RDFINAAAELLGA----SVN-KTFIKKEKPLLVCPSAEG 754

Query: 696 SKLEKAQQLGVKIMNEEQFL 715
           SK E A +    ++   ++L
Sbjct: 755 SKYEGAIKWNYPVVT-SEWL 773


>gi|209554353|ref|YP_002284813.1| DNA polymerase III PolC [Ureaplasma urealyticum serovar 10 str. ATCC
            33699]
 gi|209541854|gb|ACI60083.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 10 str. ATCC 33699]
          Length = 1442

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 540  DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595
            +  +K R+   +     L ++ +   +   LA+ +     S +        I   NN   
Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQNNAII 1378

Query: 596  LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
               + +  +G+ +A +I+E  +N +    +E L  
Sbjct: 1379 PPFVAIQGLGETVANSIIEA-RNQKAFSTIEDLKN 1412


>gi|195867849|ref|ZP_03079848.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 9 str. ATCC 33175]
 gi|195660426|gb|EDX53684.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 9 str. ATCC 33175]
          Length = 1442

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 540  DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595
            +  +K R+   +     L ++ +   +   LA+ +     S +        I   NN   
Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQNNAII 1378

Query: 596  LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
               + +  +G+ +A +I+E  +N +    +E L  
Sbjct: 1379 PPFVAIQGLGETVANSIIEA-RNQKAFSTIEDLKN 1412


>gi|119486789|ref|ZP_01620764.1| Nitrogenase MoFe cofactor biosynthesis protein NifE [Lyngbya sp.
           PCC 8106]
 gi|119456082|gb|EAW37215.1| Nitrogenase MoFe cofactor biosynthesis protein NifE [Lyngbya sp.
           PCC 8106]
          Length = 500

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 50/125 (40%), Gaps = 22/125 (17%)

Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF-TGTLQKIQRHKAQE 668
           + I + + +      VE L+   + ++ +      + +  K++V  TG ++         
Sbjct: 282 RNIADHFGDAELKQRVEKLIASENAALDQKLAPYRARLGGKRVVLYTGGVKSWS---IIS 338

Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA--QQL----GVKIM--NEEQFLFLLQQ 720
               LG  V A  ++K+      +      +KA  ++L    G+ I   + ++ L +++Q
Sbjct: 339 AAKDLGIDVVATSTKKST-----EE-----DKARIKKLLGKDGITIEKGSPQELLKVIEQ 388

Query: 721 YNTTL 725
               L
Sbjct: 389 TGADL 393


>gi|77455420|gb|ABA86519.1| CG11156 [Drosophila erecta]
          Length = 1413

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 19/80 (23%)

Query: 645 SEIENKKLVFT---GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI------IIVGDNPG 695
             ++   +V +   G L+   R         LGA     ++ KT I      ++     G
Sbjct: 699 QPLKGMTIVVSIYAG-LE---RDFINAAAELLGA----SVN-KTFIKKEKPLLVCPSAEG 749

Query: 696 SKLEKAQQLGVKIMNEEQFL 715
           SK E A +    ++   ++L
Sbjct: 750 SKYEGAIKWNYPVVT-SEWL 768


>gi|326477486|gb|EGE01496.1| RNA Polymerase II CTD phosphatase Fcp1 [Trichophyton equinum CBS
           127.97]
          Length = 866

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 653 VFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKI 708
           VF+G L             +    GA +++ ++ +T  ++ G N  +K+ +A +   +KI
Sbjct: 547 VFSGVLPLGTDTQNADISLWAKSFGATITSKINSRTTHLVAGRNRTAKVREATRYTKIKI 606

Query: 709 MNEEQFL------FLLQQYNTTLRIHDDD 731
           +  +  L        L +    + +H DD
Sbjct: 607 VTVQWLLDCMIQWKHLDEEPYLVPVHPDD 635


>gi|300811335|ref|ZP_07091832.1| comEA protein [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497699|gb|EFK32724.1| comEA protein [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 250

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 22/60 (36%)

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
           ++I  N      L ++  +G+  A+ I+ + Q   +  +++ L +               
Sbjct: 188 DLINLNTATASDLQKLNGIGEKKAEQIIAYRQEKGSFKSIDELKEVSGIGDKTFAAIKDQ 247


>gi|295099824|emb|CBK88913.1| Holliday junction DNA helicase subunit RuvA [Eubacterium
           cylindroides T2-87]
          Length = 193

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 41/148 (27%)

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +    E F+  + ++ +G + A+       +          I A   DD   L  +P +G
Sbjct: 62  KQEDYEVFMRLINVKGIGPKTAQ-------TMLAVCPGSKMIQAIEEDDVKLLKSLPGIG 114

Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665
              A  IV           ++  LK    S+   E+ +S+ +                 +
Sbjct: 115 AKTASQIV-----------LD--LKGKFVSVETKEETISNPVW---------------KE 146

Query: 666 AQEYVTQLGAVV--SAILSR----KTDI 687
            QE +  LG  V   + + +    KTD+
Sbjct: 147 TQEALVALGYKVNQLSGVRKELANKTDL 174


>gi|288924614|ref|ZP_06418551.1| peptidase, M16 family [Prevotella buccae D17]
 gi|288338401|gb|EFC76750.1| peptidase, M16 family [Prevotella buccae D17]
          Length = 941

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 24/84 (28%)

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663
           +  + A+ I  +  N +N   +  L K+   +    +K +                    
Sbjct: 488 IAKVRAEQIAAYVDNVKNEPLISQLPKKGKITKETEDKKLG------------------- 528

Query: 664 HKAQEYVTQLGAVVSAILSRKTDI 687
              ++ +   GA V   + +KTD 
Sbjct: 529 --FKKLILSNGAKV---ILKKTDF 547


>gi|104773853|ref|YP_618833.1| competence protein ComEA [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116513860|ref|YP_812766.1| DNA uptake protein related DNA-binding protein [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|103422934|emb|CAI97596.1| Competence protein ComEA [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116093175|gb|ABJ58328.1| DNA uptake protein related DNA-binding protein [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|325125517|gb|ADY84847.1| Competence protein [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 248

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 22/60 (36%)

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
           ++I  N      L ++  +G+  A+ I+ + Q   +  +++ L +               
Sbjct: 186 DLINLNTATASDLQKLNGIGEKKAEQIIAYRQEKGSFKSIDELKEVSGIGDKTFAAIKDQ 245


>gi|215687334|dbj|BAG91866.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 901

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705
                 +  T  L   +R +  + + Q G   SA L+R+   ++  +  G K   AQ+ G
Sbjct: 204 PFSGLNICIT-KLNVDERRELAKIIVQNGGQYSANLTRRCTHLVSNEPGGDKYVVAQKWG 262


>gi|225550655|ref|ZP_03771604.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 2 str. ATCC 27814]
 gi|225379809|gb|EEH02171.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 2 str. ATCC 27814]
          Length = 1442

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 540  DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595
            +  +K R+   +     L ++ +   +   LA+ +     S +        I   NN   
Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQNNAII 1378

Query: 596  LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
               + +  +G+ +A +I+E  +N +    +E L  
Sbjct: 1379 PPFVAIQGLGETVANSIIEA-RNQKAFSTIEDLKN 1412


>gi|185178976|ref|ZP_02964733.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 5 str. ATCC 27817]
 gi|225551037|ref|ZP_03771983.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 8 str. ATCC 27618]
 gi|184209258|gb|EDU06301.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 5 str. ATCC 27817]
 gi|225378852|gb|EEH01217.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 8 str. ATCC 27618]
          Length = 1442

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 540  DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL----SYQNFAQEINNIIAHNNDDW 595
            +  +K R+   +     L ++ +   +   LA+ +     S +        I   NN   
Sbjct: 1319 EQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQNNAII 1378

Query: 596  LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630
               + +  +G+ +A +I+E  +N +    +E L  
Sbjct: 1379 PPFVAIQGLGETVANSIIEA-RNQKAFSTIEDLKN 1412


>gi|169827695|ref|YP_001697853.1| glutamate dehydrogenase [Lysinibacillus sphaericus C3-41]
 gi|168992183|gb|ACA39723.1| NADP-specific glutamate dehydrogenase [Lysinibacillus sphaericus
           C3-41]
          Length = 457

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 6/46 (13%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGT--LQKIQRHKAQEYVTQLGAVVS 678
            +    K+V+   E K +V +G+  +       A E   Q GA V 
Sbjct: 228 FVNEMLKDVNDSFEGKTVVVSGSGNVSTY----AIEKAQQYGAKVV 269


>gi|188589352|ref|YP_001919647.1| DNA integrity scanning protein DisA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251777748|ref|ZP_04820668.1| DNA integrity scanning protein DisA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|226729437|sp|B2UY85|DISA_CLOBA RecName: Full=DNA integrity scanning protein disA
 gi|188499633|gb|ACD52769.1| DNA integrity scanning protein DisA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243082063|gb|EES47953.1| DNA integrity scanning protein DisA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 354

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 20/51 (39%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +N  +E   + +    D   L  V  +G+  A+AI +  +  R    +  
Sbjct: 302 IENLIKEFRELNSVIEADLDELDIVEGIGEARAKAIKDGLKRIREQILLNK 352


>gi|220930937|ref|YP_002507845.1| predicted nucleic-acid-binding protein (contains the HHH domain)
           [Halothermothrix orenii H 168]
 gi|219992247|gb|ACL68850.1| predicted nucleic-acid-binding protein (contains the HHH domain)
           [Halothermothrix orenii H 168]
          Length = 359

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           I  +   +  +L  ++ S Q                   L  V  VG++ A+AI +  + 
Sbjct: 299 IPRLPMPVIDNLVGHFGSLQKVLNAFP----------DELDDVDGVGEVRAKAIKDGLRR 348

Query: 619 PRNICAVEA 627
            R+   ++ 
Sbjct: 349 LRDQVLLDR 357


>gi|77455416|gb|ABA86517.1| CG11156 [Drosophila yakuba]
          Length = 1405

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 19/80 (23%)

Query: 645 SEIENKKLVFT---GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI------IIVGDNPG 695
             ++   +V +   G L+   R         LGA     ++ KT I      ++     G
Sbjct: 699 QPLKGMTIVVSIYAG-LE---RDFINAAAELLGA----SVN-KTFIRKEKPLLVCPSAEG 749

Query: 696 SKLEKAQQLGVKIMNEEQFL 715
           SK + A +    ++   ++L
Sbjct: 750 SKYDGAIKWNYPVVT-SEWL 768


>gi|296117956|ref|ZP_06836539.1| excinuclease ABC subunit C [Corynebacterium ammoniagenes DSM 20306]
 gi|295969187|gb|EFG82429.1| excinuclease ABC subunit C [Corynebacterium ammoniagenes DSM 20306]
          Length = 624

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 10/57 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
            I  +G      L K++ S +   +               +  V  +G  +A  I E
Sbjct: 574 SIPGLGPTRRMDLVKHFGSVKKLKEASE----------EQIAEVKGIGPKMAATIFE 620


>gi|257438675|ref|ZP_05614430.1| excinuclease ABC subunit C [Faecalibacterium prausnitzii A2-165]
 gi|257198904|gb|EEU97188.1| excinuclease ABC subunit C [Faecalibacterium prausnitzii A2-165]
          Length = 615

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 10/59 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           +  VG + A++L   + S     +               L   P VG  +AQ I +++ 
Sbjct: 566 VPGVGPKTAKALMTQFKSVGAVREATP----------DQLENTPGVGPQLAQTIYDYFH 614


>gi|297544351|ref|YP_003676653.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842126|gb|ADH60642.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 201

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNV 643
             I  N      L  +P +G + A+ I+EF +N      +E ++    + P +    K+ 
Sbjct: 138 EKININTATKEELETLPGIGPVTAERIIEFRENKGFFKKIEDIMNVPRIGPKMFEQIKDK 197


>gi|289578078|ref|YP_003476705.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter italicus Ab9]
 gi|289527791|gb|ADD02143.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter italicus Ab9]
          Length = 201

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNV 643
             I  N      L  +P +G + A+ I+EF +N      +E ++    + P +    K+ 
Sbjct: 138 EKININTATKEELETLPGIGPVTAERIIEFRENKGFFKKIEDIMNVPRIGPKMFEQIKDK 197


>gi|326328756|ref|ZP_08195092.1| putative DNA-binding protein [Nocardioidaceae bacterium Broad-1]
 gi|325953378|gb|EGD45382.1| putative DNA-binding protein [Nocardioidaceae bacterium Broad-1]
          Length = 360

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +  +   +   L  ++ + Q                   L  V  VG++ A+++ E    
Sbjct: 300 VPRLPPAVVDRLVDHFGTLQKLLSA----------SVDDLQAVEGVGELRARSVREGLSR 349

Query: 619 PRNICAVEA 627
                 +E 
Sbjct: 350 LAESTILER 358


>gi|325684379|gb|EGD26548.1| competence protein ComEA [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 252

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 22/60 (36%)

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
           ++I  N      L ++  +G+  A+ I+ + Q   +  +++ L +               
Sbjct: 190 DLINLNTATASDLQKLNGIGEKKAEQIIAYRQEKGSFKSIDELKEVSGIGDKTFAAIKDQ 249


>gi|255325515|ref|ZP_05366617.1| DNA-binding protein [Corynebacterium tuberculostearicum SK141]
 gi|255297453|gb|EET76768.1| DNA-binding protein [Corynebacterium tuberculostearicum SK141]
          Length = 232

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%)

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
           N+     L  +  VG++ A AIV + +       VE LL+       +  +     
Sbjct: 175 NSATAEELTELKGVGEVTAHAIVAYREEHGGFKDVEELLEVSGIGPAKLAQLKDQI 230


>gi|114799928|ref|YP_761639.1| short chain dehydrogenase/reductase family oxidoreductase
           [Hyphomonas neptunium ATCC 15444]
 gi|114740102|gb|ABI78227.1| oxidoreductase, short chain dehydrogenase/reductase family
           [Hyphomonas neptunium ATCC 15444]
          Length = 335

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
               +      +E K ++ TGT     R  A+ Y  +LGA V
Sbjct: 31  ETSPQAPAPGALEGKTILITGTASGFGRLGAEHYA-RLGARV 71


>gi|4586101|emb|CAB40937.1| putative protein [Arabidopsis thaliana]
 gi|7267897|emb|CAB78239.1| putative protein [Arabidopsis thaliana]
          Length = 338

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 36  YQYSKPIILDSEYDALKRRCD 56
           Y    PI+ D EYD LK +  
Sbjct: 139 YVSGNPILSDEEYDKLKMKLK 159


>gi|42566515|ref|NP_192933.2| PGRL1B (PGR5-Like B) [Arabidopsis thaliana]
 gi|75151402|sp|Q8GYC7|PGL1B_ARATH RecName: Full=PGR5-like protein 1B, chloroplastic; Flags: Precursor
 gi|26450517|dbj|BAC42372.1| unknown protein [Arabidopsis thaliana]
 gi|28950891|gb|AAO63369.1| At4g11960 [Arabidopsis thaliana]
 gi|332657674|gb|AEE83074.1| PGR5-like protein 1B [Arabidopsis thaliana]
          Length = 313

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 36  YQYSKPIILDSEYDALKRRCD 56
           Y    PI+ D EYD LK +  
Sbjct: 139 YVSGNPILSDEEYDKLKMKLK 159


>gi|313140289|ref|ZP_07802482.1| nuclease subunit of the excinuclease complex [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313132799|gb|EFR50416.1| nuclease subunit of the excinuclease complex [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 794

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 13/113 (11%)

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
           P D + +  ++Q+    +   +          Y    +R+           GI  VG   
Sbjct: 695 PDDEYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSA---LDGIPGVGETY 751

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
            + L  ++ S +                   L  V  +G   A+AI       
Sbjct: 752 QKRLLSHFGSVRAMRDA----------SVEELEAVKGIGHAKAEAIHTALHAE 794


>gi|292622477|ref|XP_690042.2| PREDICTED: retinol dehydrogenase 13-like [Danio rerio]
          Length = 337

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
           ++ K +V TG    I R  A++     GA V 
Sbjct: 50  LDGKTVVITGANTGIGRETAKDMA-YRGARVV 80


>gi|224283140|ref|ZP_03646462.1| excinuclease ABC subunit C [Bifidobacterium bifidum NCIMB 41171]
          Length = 780

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 13/113 (11%)

Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566
           P D + +  ++Q+    +   +          Y    +R+           GI  VG   
Sbjct: 681 PDDEYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSA---LDGIPGVGETY 737

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
            + L  ++ S +                   L  V  +G   A+AI       
Sbjct: 738 QKRLLSHFGSVRAMRDA----------SVEELEAVKGIGHAKAEAIHTALHAE 780


>gi|213403374|ref|XP_002172459.1| DNA repair protein Rhp9 [Schizosaccharomyces japonicus yFS275]
 gi|212000506|gb|EEB06166.1| DNA repair protein Rhp9 [Schizosaccharomyces japonicus yFS275]
          Length = 634

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 11/26 (42%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVV 677
            V TG+     R + +  + Q G  V
Sbjct: 398 FVLTGSNSSYNRLEMKNLIKQFGGTV 423


>gi|203287496|ref|YP_002222511.1| Holliday junction DNA helicase [Borrelia recurrentis A1]
 gi|226698726|sp|B5RQK6|RUVA_BORRA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|201084716|gb|ACH94290.1| Holliday junction DNA helicase [Borrelia recurrentis A1]
          Length = 196

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 4/83 (4%)

Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
           +  Y+    +  +    +     + + +LI V  +G   A  I+   +      A+    
Sbjct: 46  ILTYFHFRDDDVKLFGFLNISEREVFENLIGVDGIGPKAALKILSGIKYDAFRLAIAK-- 103

Query: 630 KEVSPSIGRHEKNVSSEIENKKL 652
                ++    K + ++I  K  
Sbjct: 104 --EDINLISKVKGIGNKIAGKIF 124


>gi|328862593|gb|EGG11694.1| hypothetical protein MELLADRAFT_90918 [Melampsora larici-populina
           98AG31]
          Length = 679

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 10/66 (15%)

Query: 650 KKLV-FTGTLQKIQRHKAQEYVTQLGAVVSA----ILSRKTDIIIVGDNPGSKLEKAQQL 704
           K +V  T       R      + ++G   S          T +++  +  G K+E A +L
Sbjct: 381 KNVVSIT-NYTGFSRAWLIRLIEKMGLKYSGPLDCS----TSLLLAANKSGKKVEWASEL 435

Query: 705 GVKIMN 710
           G+  +N
Sbjct: 436 GIPTVN 441


>gi|161507964|ref|YP_001577928.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348953|gb|ABX27627.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 317

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 29/128 (22%)

Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVS----------SEIENKKLVFTGTLQKIQRHKAQ 667
           N  N    E LL++    I   +              + +++K +V +G L  + +  A 
Sbjct: 192 NDFNQHFTEDLLEQAIGKIKNVDLTGDEVDYYQLGFRNPVQDKNIVLSGNL-HMDQRDAG 250

Query: 668 EYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQQL-----GVKIMNEEQ 713
           + +  +G  +   +   T+ +I+G         ++    L +A+ L      +K ++E  
Sbjct: 251 KMINNMGGQLDQNVENTTNYLIMGDHDFFRKNNED----LNRARLLIKDGAKIKRLSESF 306

Query: 714 FLFLLQQY 721
           FL +L  +
Sbjct: 307 FLSMLDDW 314


>gi|319654841|ref|ZP_08008916.1| DNA-binding protein [Bacillus sp. 2_A_57_CT2]
 gi|317393404|gb|EFV74167.1| DNA-binding protein [Bacillus sp. 2_A_57_CT2]
          Length = 357

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/190 (11%), Positives = 50/190 (26%), Gaps = 19/190 (10%)

Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504
              +             +    +    L  ++S        +  Q  +   + E  A  I
Sbjct: 178 EFEELVTYSDILHVFHNIEMVLRIKNELLTYLSELGTEGRLIRLQMNELLMELEREAEWI 237

Query: 505 -------RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557
                  R       + + Q+ S  ++        +   N Y    + +     R +   
Sbjct: 238 IKDYAQSRDIDSRDAIVKLQELSKGEMLEDSVILKLLGYNGYIHTEEFKCPRGYRMLNK- 296

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            +  +   I  +L   +  + N                  L  V  +G++ A+ I E  +
Sbjct: 297 -VPRLPPIIIDNLINRFEEFPNIITAT----------VEELDEVEGIGEVRARKIKEGLK 345

Query: 618 NPRNICAVEA 627
             +     + 
Sbjct: 346 LIKEQVFADR 355


>gi|312831421|emb|CBY17601.1| unnamed protein product [Escherichia coli LF82]
 gi|323963929|gb|EGB59422.1| hypothetical protein ERJG_04702 [Escherichia coli M863]
 gi|327252326|gb|EGE63998.1| hypothetical protein ECSTEC7V_3178 [Escherichia coli STEC_7v]
          Length = 160

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710
           + FTG  +K  + +  +   + G  V   +++   ++  G N G SK+  A+  G  I++
Sbjct: 86  VCFTG-FKKADKERLVDKANEQGLTVRTSVTQNLQMLCCGYNAGPSKVSAARMKGTIIID 144

Query: 711 EEQFLFLLQ 719
           E  F+  L+
Sbjct: 145 EPGFIHFLE 153


>gi|126730491|ref|ZP_01746302.1| excinuclease ABC subunit C [Sagittula stellata E-37]
 gi|126709224|gb|EBA08279.1| excinuclease ABC subunit C [Sagittula stellata E-37]
          Length = 629

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 10/83 (12%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ +    +       ++ VGA   R+L +++ S            A +  + 
Sbjct: 555 HRFAIGTHRAKRAKAQMANPLDEVQGVGAARKRALLQHFGS----------AKAVSRANL 604

Query: 596 LSLIRVPLVGDIIAQAIVEFYQN 618
             L  V  V + +A+ I  F+  
Sbjct: 605 ADLKAVDGVSEALAERIYAFFHE 627


>gi|123417461|ref|XP_001305118.1| virulent strain associated lipoprotein [Trichomonas vaginalis G3]
 gi|121886617|gb|EAX92188.1| virulent strain associated lipoprotein, putative [Trichomonas
           vaginalis G3]
          Length = 884

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
           GAV S  L++K   +I     GSK E A + G+ +++ +  
Sbjct: 369 GAVHSKNLTKKVSYLIANKQSGSKYEMALKWGITVVSVDAL 409


>gi|21227489|ref|NP_633411.1| Hef nuclease [Methanosarcina mazei Go1]
 gi|20905864|gb|AAM31083.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina mazei
           Go1]
          Length = 864

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 10/62 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I ++G + AR+L  Y+ S +   +           D   L +V  +G   A  I E  +
Sbjct: 810 SISNIGPKAARNLLSYFGSVEAVMRA----------DIEELKKVKQIGPKTAARIREVLE 859

Query: 618 NP 619
           +P
Sbjct: 860 SP 861


>gi|255994367|ref|ZP_05427502.1| competence protein CelA [Eubacterium saphenum ATCC 49989]
 gi|255993080|gb|EEU03169.1| competence protein CelA [Eubacterium saphenum ATCC 49989]
          Length = 211

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
             N  D   L  V  +G   A+ I+++ +N  N   VE L+K         +K
Sbjct: 152 NLNTADATKLQTVNGIGPATAEKIIDYRENNGNFKKVEDLVKVPGIGPKTVQK 204


>gi|310644233|ref|YP_003948992.1| DNA-binding protein [Paenibacillus polymyxa SC2]
 gi|309249184|gb|ADO58751.1| DNA-binding protein [Paenibacillus polymyxa SC2]
          Length = 358

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 16/51 (31%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
             N  +               L  V  +G++ A+ I E  +  +    ++ 
Sbjct: 306 IHNLVERFGRFPHVMTATIEELDEVDGIGEVRARTIKEGLKRLQEQVFIDR 356


>gi|296453196|ref|YP_003660339.1| glutamate dehydrogenase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296182627|gb|ADG99508.1| Glutamate dehydrogenase (NADP(+)) [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 448

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 7/41 (17%)

Query: 644 SSEIENKKLVFTGT--LQKIQRHKAQEYVTQLGAVVSAILS 682
           +   E K +V +G+  +       A +   QLGA V   +S
Sbjct: 228 NDSFEGKTVVISGSGNVATY----AAQKAEQLGAKVVT-VS 263


>gi|23335946|ref|ZP_00121177.1| COG0334: Glutamate dehydrogenase/leucine dehydrogenase
           [Bifidobacterium longum DJO10A]
 gi|23465213|ref|NP_695816.1| glutamate dehydrogenase [Bifidobacterium longum NCC2705]
 gi|189440289|ref|YP_001955370.1| glutamate dehydrogenase [Bifidobacterium longum DJO10A]
 gi|227547501|ref|ZP_03977550.1| glutamate dehydrogenase (NADP(+)) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239622833|ref|ZP_04665864.1| glutamate dehydrogenase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|312133623|ref|YP_004000962.1| gdha [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482371|ref|ZP_07941390.1| glutamate/Leucine/Phenylalanine/Valine dehydrogenase
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688201|ref|YP_004207935.1| glutamate dehydrogenase [Bifidobacterium longum subsp. infantis
           157F]
 gi|322690203|ref|YP_004219773.1| glutamate dehydrogenase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|23325840|gb|AAN24452.1| NADP-specific glutamate dehydrogenase [Bifidobacterium longum
           NCC2705]
 gi|189428724|gb|ACD98872.1| Glutamate dehydrogenase/leucine dehydrogenase [Bifidobacterium
           longum DJO10A]
 gi|227212016|gb|EEI79912.1| glutamate dehydrogenase (NADP(+)) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239514830|gb|EEQ54697.1| glutamate dehydrogenase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|291517726|emb|CBK71342.1| glutamate dehydrogenase (NADP) [Bifidobacterium longum subsp.
           longum F8]
 gi|311772880|gb|ADQ02368.1| GdhA [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916165|gb|EFV37568.1| glutamate/Leucine/Phenylalanine/Valine dehydrogenase
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455059|dbj|BAJ65681.1| glutamate dehydrogenase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320459537|dbj|BAJ70157.1| glutamate dehydrogenase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 448

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 7/41 (17%)

Query: 644 SSEIENKKLVFTGT--LQKIQRHKAQEYVTQLGAVVSAILS 682
           +   E K +V +G+  +       A +   QLGA V   +S
Sbjct: 228 NDSFEGKTVVISGSGNVATY----AAQKAEQLGAKVVT-VS 263


>gi|224419232|ref|ZP_03657238.1| competence protein ComEA helix-hairpin-helix region [Helicobacter
           canadensis MIT 98-5491]
          Length = 67

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
            + L   +L+       ++     N  +   L+ +  +G+  AQAI+++ +      +++
Sbjct: 1   MKLLVALFLALSFLFGAVD----LNKANKEELMSIKGIGEAKAQAIIDY-REKTPFKSID 55

Query: 627 ALLK 630
            L  
Sbjct: 56  DLKN 59


>gi|315038988|ref|YP_004032556.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112]
 gi|325957414|ref|YP_004292826.1| DNA polymerase III [Lactobacillus acidophilus 30SC]
 gi|312277121|gb|ADQ59761.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112]
 gi|325333979|gb|ADZ07887.1| DNA polymerase III [Lactobacillus acidophilus 30SC]
 gi|327184122|gb|AEA32569.1| DNA polymerase III [Lactobacillus amylovorus GRL 1118]
          Length = 318

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 29/120 (24%)

Query: 626 EALLKEVSPSIGRHEKNVS----------SEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675
           + LL+     I   +              + ++NK +V +G +  +    A + +  +G 
Sbjct: 201 DDLLEATRNKIKNVDLTGDDVDYIDLGFRNPVQNKNIVLSGHI-HMDEQDADKMIGNMGG 259

Query: 676 VVSAILSRKTDIIIVG---------DNPGSKLEKAQQL-----GVKIMNEEQFLFLLQQY 721
            V   ++  T+ +I+G         ++    L  A+ L      +K ++E  FL +L  +
Sbjct: 260 KVEDKVNPMTNYLIMGDHDFFRKDNED----LNTARDLIKDGAKIKRLSESFFLGMLDDW 315


>gi|294495366|ref|YP_003541859.1| ERCC4 domain protein [Methanohalophilus mahii DSM 5219]
 gi|292666365|gb|ADE36214.1| ERCC4 domain protein [Methanohalophilus mahii DSM 5219]
          Length = 754

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           I  +G + AR+L +++ S +   +               L  V L+G   A  I E
Sbjct: 701 IPQLGPQAARNLLEHFGSVEAVMKACE----------EELREVKLIGPKTAARIRE 746


>gi|227551295|ref|ZP_03981344.1| competence protein ComEA [Enterococcus faecium TX1330]
 gi|257887588|ref|ZP_05667241.1| competence protein ComEA [Enterococcus faecium 1,141,733]
 gi|257896084|ref|ZP_05675737.1| competence protein ComEA [Enterococcus faecium Com12]
 gi|293377501|ref|ZP_06623697.1| comEA protein [Enterococcus faecium PC4.1]
 gi|227179575|gb|EEI60547.1| competence protein ComEA [Enterococcus faecium TX1330]
 gi|257823642|gb|EEV50574.1| competence protein ComEA [Enterococcus faecium 1,141,733]
 gi|257832649|gb|EEV59070.1| competence protein ComEA [Enterococcus faecium Com12]
 gi|292643870|gb|EFF61984.1| comEA protein [Enterococcus faecium PC4.1]
          Length = 225

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           I  N      L ++P +G + AQ I+ F +   +   VE L +         EK      
Sbjct: 164 ININTASPSELQQIPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKTVEKL----- 218

Query: 648 ENKKLV 653
             K  V
Sbjct: 219 --KNFV 222


>gi|315446079|ref|YP_004078958.1| hypothetical protein Mspyr1_45720 [Mycobacterium sp. Spyr1]
 gi|315264382|gb|ADU01124.1| hypothetical protein Mspyr1_45720 [Mycobacterium sp. Spyr1]
          Length = 781

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 17/93 (18%)

Query: 642 NVSSEIE-NKKLVFTGT--------LQKIQRHKAQEYVTQLGAVVSAILSR-KTDIII-- 689
           +V   +    ++ FTGT        ++   R + +   T  G V    +++ + D+++  
Sbjct: 693 DVDGILAPGARICFTGTAQDPDGRVVE---RDEMERLATAAGLVPVKSVTKTRCDVLVTA 749

Query: 690 -VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721
             G   G K  KA +    ++  + F   L  +
Sbjct: 750 EAGTQSG-KARKALEYDKPVLCADDFFTWLAAH 781


>gi|313123470|ref|YP_004033729.1| DNA uptake protein related DNA-binding protein [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280033|gb|ADQ60752.1| DNA uptake protein related DNA-binding protein [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 252

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 22/60 (36%)

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
           ++I  N      L ++  +G+  A+ I+ + Q   +  +++ L +               
Sbjct: 190 DLINLNTATASDLQKLNGIGEKKAEQIIAYRQEKGSFKSIDELKEVSGIGDKTFAAIKDQ 249


>gi|261379141|ref|ZP_05983714.1| DNA topoisomerase [Neisseria cinerea ATCC 14685]
 gi|269144414|gb|EEZ70832.1| DNA topoisomerase [Neisseria cinerea ATCC 14685]
          Length = 96

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 20/62 (32%)

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
               +  N      L  +P +G   A+AIVE+        +V+ L K          K  
Sbjct: 14  SFAAVNVNAASQQELEALPGIGPAKAKAIVEYRAQNGAFKSVDELTKVKGIGPAVLAKLK 73

Query: 644 SS 645
             
Sbjct: 74  DQ 75


>gi|261378489|ref|ZP_05983062.1| DNA topoisomerase [Neisseria cinerea ATCC 14685]
 gi|261379152|ref|ZP_05983725.1| DNA topoisomerase [Neisseria cinerea ATCC 14685]
 gi|269144381|gb|EEZ70799.1| DNA topoisomerase [Neisseria cinerea ATCC 14685]
 gi|269145289|gb|EEZ71707.1| DNA topoisomerase [Neisseria cinerea ATCC 14685]
          Length = 99

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 20/62 (32%)

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643
               +  N      L  +P +G   A+AIVE+        +V+ L K          K  
Sbjct: 17  SFAAVNVNAASQQELEALPGIGPAKAKAIVEYRAQNGAFKSVDELTKVKGIGPAVLAKLK 76

Query: 644 SS 645
             
Sbjct: 77  DQ 78


>gi|124504849|ref|XP_001351167.1| N2227-like protein, putative [Plasmodium falciparum 3D7]
 gi|3649764|emb|CAB11113.1| N2227-like protein, putative [Plasmodium falciparum 3D7]
          Length = 955

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/348 (4%), Positives = 57/348 (16%), Gaps = 10/348 (2%)

Query: 162 DVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR----KPYANPR 217
           D                  +  + E+R ++  S+N+   ++   +  G         + +
Sbjct: 266 DKVYNYHNFNVRLLCKDDALIILNEIRSKMINSQNEKKIVDMLNMKCGDVIVDDKNGSDK 325

Query: 218 NAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANT 277
           ++ +  +   +  +                                     ++     N 
Sbjct: 326 DSGNNDIHNKDIHNKYDDNMDSSDKSSCNKNSCDNHCDNHCDNHSDNHCDNHSDNHCDNH 385

Query: 278 FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF---SLQKQLGERARSPRWMISHKFAEKQ 334
                  + +         +  +      D                +          +  
Sbjct: 386 CDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNH 445

Query: 335 ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA--TLHNEDYIKGLDASGKVMRGG 392
           +     +                    +       +      N       +         
Sbjct: 446 SDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHSDNHCDNHCDNHSDNHCDNHCDNHSDNH 505

Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452
            D    +               +   N    +       + C         +        
Sbjct: 506 CDNHCDNHCDNHCDNHCDNHCDNHCDNH-CDNHCDNHCDNHCDNHCDNHCDNHCDNHCDN 564

Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
              + C          +        +   N         + +  + + 
Sbjct: 565 HCDNHCDNNKMNRTHLMNSNTKGDDQTCKNTNEYSDTSSNHYCNNIEE 612


>gi|73662477|ref|YP_301258.1| DNA uptake protein and related DNA-binding protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72494992|dbj|BAE18313.1| putative DNA uptake protein and related DNA-binding protein
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
          Length = 240

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 5/149 (3%)

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           I+       + + + T   K                 ++ ++       +I  +G +   
Sbjct: 92  IKGAVQHPDIYKMKDTDRVKQLVDKAILLKDADLSSVNLAEKLQDQKVIYIPKIGDKDQK 151

Query: 564 AEIARSLA---KYYLSYQNFAQEINNIIAHNNDDWL-SLIRVPLVGDIIAQAIVEFYQNP 619
                  A    +    +     IN+   + ND     L+ +  +G   A+AI+E+ Q  
Sbjct: 152 DINMNHFALKNNHTEDSKKGNSTINSEQININDATESQLLTINGIGPTKAKAIIEYRQQH 211

Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIE 648
               +VE L K+V+    +  + + S++ 
Sbjct: 212 GPFESVEQL-KDVNGIGAKTLEKIGSKLT 239


>gi|27807449|ref|NP_777176.1| poly [ADP-ribose] polymerase 1 [Bos taurus]
 gi|130779|sp|P18493|PARP1_BOVIN RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
           AltName: Full=NAD(+) ADP-ribosyltransferase 1;
           Short=ADPRT 1; AltName: Full=Poly[ADP-ribose] synthase 1
 gi|217582|dbj|BAA14114.1| poly(ADP-ribose) synthetase [Bos taurus]
          Length = 1016

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 36/86 (41%), Gaps = 25/86 (29%)

Query: 644 SSEIENKKLVFT-GTLQKIQRHKAQEYVTQLGAVVSAILSR------------KTDIIIV 690
              + N K+  T G L +  + + +  + +LG  ++   ++            K +    
Sbjct: 389 DKPLSNMKI-LTLGKLSQ-NKDEVKATIEKLGGKLTGTANKASLCISTKKEVDKLN---- 442

Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLF 716
                 K+E+ ++  +++++E+ FL 
Sbjct: 443 -----KKMEEVKEANIRVVSED-FLQ 462


>gi|322706326|gb|EFY97907.1| RNA Polymerase II CTD phosphatase Fcp1 [Metarhizium anisopliae
           ARSEF 23]
          Length = 807

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 640 EKNVSSEIENKKLVFTGTLQ---KIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690
           ++  S+ +    +V +G +     I+  +        GA V   +SR+   ++V
Sbjct: 503 DELKSNVLSGLVIVLSGLVPLGVNIEDSEIGMQAQSFGAQVLDSVSRRVTHLVV 556


>gi|315093170|gb|EFT65146.1| comEA protein [Propionibacterium acnes HL060PA1]
          Length = 283

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 21/57 (36%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
              +  N  +   L  +  VG ++A  I+ + Q      +V+ L +         EK
Sbjct: 220 KAPVDLNTANQSELETIDGVGPVMAGKIMAWRQEHGQFASVDQLREISGIGAKTFEK 276


>gi|314966912|gb|EFT11011.1| comEA protein [Propionibacterium acnes HL082PA2]
 gi|327327733|gb|EGE69509.1| ComE operon protein 1 [Propionibacterium acnes HL103PA1]
          Length = 283

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 21/57 (36%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
              +  N  +   L  +  VG ++A  I+ + Q      +V+ L +         EK
Sbjct: 220 KAPVDLNTANQSELETIDGVGPVMAGKIMAWRQEHGQFASVDQLREISGIGAKTFEK 276


>gi|256397462|ref|YP_003119026.1| DNA integrity scanning protein DisA [Catenulispora acidiphila DSM
           44928]
 gi|256363688|gb|ACU77185.1| protein of unknown function DUF147 [Catenulispora acidiphila DSM
           44928]
          Length = 362

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +  +   +   L +++   Q                   L RV  VG+  A+++ E    
Sbjct: 302 VPRLPGAVIDRLVEHFGGLQKLLAA----------SIDDLQRVEGVGETRARSVREGLSR 351

Query: 619 PRNICAVEA 627
                 +E 
Sbjct: 352 LAESSILER 360


>gi|157690871|ref|YP_001485333.1| DNA integrity scanning protein DisA [Bacillus pumilus SAFR-032]
 gi|167016888|sp|A8F956|DISA_BACP2 RecName: Full=DNA integrity scanning protein disA
 gi|157679629|gb|ABV60773.1| DNA integrity scanning protein [Bacillus pumilus SAFR-032]
          Length = 359

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/194 (8%), Positives = 48/194 (24%), Gaps = 15/194 (7%)

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S +      +                  +    +  ++         +  Q  +     E
Sbjct: 174 SALSALEFEELVTFGDVLSVLHRYEMVLRIKNEINMYIKELGTEGHLIRLQVNELITDME 233

Query: 499 DPAFS-----IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             A       ++       +  +Q    +  E +       +     S N    +    +
Sbjct: 234 QEAALFIKDYVKEKIKDPYVLLKQLQDMSSFELLDDSILYKLLGYPASTNIDEYVYTRGY 293

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
                I  +   I  ++ + +       +           D   L  V  +G++ A+ I 
Sbjct: 294 RLLHKIPRLPMPIVENVVEAFGVLDRIMEA----------DVQDLDEVEGIGEVRAKKIK 343

Query: 614 EFYQNPRNICAVEA 627
           +  +  +    ++ 
Sbjct: 344 KGLKRLQEKHYIDR 357


>gi|50842380|ref|YP_055607.1| ComE operon protein 1 [Propionibacterium acnes KPA171202]
 gi|282854162|ref|ZP_06263499.1| comEA protein [Propionibacterium acnes J139]
 gi|50839982|gb|AAT82649.1| ComE operon protein 1 [Propionibacterium acnes KPA171202]
 gi|282583615|gb|EFB88995.1| comEA protein [Propionibacterium acnes J139]
 gi|314923143|gb|EFS86974.1| comEA protein [Propionibacterium acnes HL001PA1]
 gi|314981253|gb|EFT25347.1| comEA protein [Propionibacterium acnes HL110PA3]
 gi|315091822|gb|EFT63798.1| comEA protein [Propionibacterium acnes HL110PA4]
 gi|315103325|gb|EFT75301.1| comEA protein [Propionibacterium acnes HL050PA2]
 gi|315105530|gb|EFT77506.1| comEA protein [Propionibacterium acnes HL030PA1]
          Length = 283

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 21/57 (36%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
              +  N  +   L  +  VG ++A  I+ + Q      +V+ L +         EK
Sbjct: 220 KAPVDLNTANQSELETIDGVGPVMAGKIMAWRQEHGQFASVDQLREISGIGAKTFEK 276


>gi|21674621|ref|NP_662686.1| excinuclease ABC, subunit C [Chlorobium tepidum TLS]
 gi|32130301|sp|Q8KBI0|UVRC_CHLTE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|21647822|gb|AAM73028.1| excinuclease ABC, subunit C [Chlorobium tepidum TLS]
          Length = 626

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 15/136 (11%)

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG--FGDVSVTNLYDSI 542
            +  Q L         A   +   +I+        +  K    L          + +   
Sbjct: 498 NVAWQVLQELGLDLPVAGLAKRLEEIYVPNEPDPYNLPKTSPALKLLQQLRDEAHRFAIT 557

Query: 543 NKRRNISLERFIFSL-GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
             R+  S       L GI+ VG + A  L K++ S ++ ++               L  V
Sbjct: 558 YHRKLRSDRTIRTELTGIKGVGEKSAEKLLKHFGSVESVSKA----------SIDELSAV 607

Query: 602 PLVGDIIAQAIVEFYQ 617
              G   A++I  ++ 
Sbjct: 608 A--GRKTAESIYRYFN 621


>gi|331084378|ref|ZP_08333482.1| hypothetical protein HMPREF0992_02406 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401642|gb|EGG81223.1| hypothetical protein HMPREF0992_02406 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 200

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 13/65 (20%)

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           I  N  D   L  +P VG+  AQ+I+E+ +       +E L +                 
Sbjct: 139 ININTADLTELQEIPGVGEKKAQSIMEYREACGGFQNIEQLQEVPGI------------- 185

Query: 648 ENKKL 652
           + K  
Sbjct: 186 KGKTF 190


>gi|296125102|ref|YP_003632354.1| excinuclease ABC, C subunit [Brachyspira murdochii DSM 12563]
 gi|296016918|gb|ADG70155.1| excinuclease ABC, C subunit [Brachyspira murdochii DSM 12563]
          Length = 613

 Score = 38.6 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/114 (12%), Positives = 33/114 (28%), Gaps = 13/114 (11%)

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           I +P     ++             +        N      + R +         GI  +G
Sbjct: 512 IYLPNRNEPVRLNDNEPARLFLQKVRDETHRWVNTSHGKKRSREMVKSE---LEGINGLG 568

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            +    L  ++++  N            N  + S+  +P +   +A  I + + 
Sbjct: 569 KKGIEKLYAHFINIDNI----------KNASFESIRNIPGISYKVANNIYDHFH 612


>gi|126740607|ref|ZP_01756294.1| excinuclease ABC subunit C [Roseobacter sp. SK209-2-6]
 gi|126718408|gb|EBA15123.1| excinuclease ABC subunit C [Roseobacter sp. SK209-2-6]
          Length = 622

 Score = 38.6 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 10/89 (11%)

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
                       ++ +            +  VGA   R+L  ++ S            A 
Sbjct: 543 MRDEAHRFAIGTHRAKRAKAIGATPLDEVPGVGASRKRALLAHFGS----------AKAV 592

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
           +  D   L  V  +   +A+ I +F+   
Sbjct: 593 SRADLADLKAVEGISSALAETIYDFFHEK 621


>gi|303244918|ref|ZP_07331244.1| helicase domain protein [Methanothermococcus okinawensis IH1]
 gi|302484735|gb|EFL47673.1| helicase domain protein [Methanothermococcus okinawensis IH1]
          Length = 797

 Score = 38.6 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 10/57 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
               VG   A +L   + + +N                  L  V  +G+I+A+ I  
Sbjct: 743 SFPDVGPLTAENLLMKFGTIENIVNAPE----------EELREVEGIGEIMAKKIKS 789


>gi|300768268|ref|ZP_07078173.1| ComE operon protein 1 [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300494332|gb|EFK29495.1| ComE operon protein 1 [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 241

 Score = 38.6 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 21/63 (33%)

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
              + I  N  D  +L  +  +G   A+ I+++ Q   N   ++ L            K 
Sbjct: 176 AATDKINLNTADVAALQTLSGIGQKKAEKIIDYRQQHGNFKTIDDLKNVSGFGEKTVAKY 235

Query: 643 VSS 645
              
Sbjct: 236 KDQ 238


>gi|260590121|ref|ZP_05856034.1| competence protein CelA [Blautia hansenii DSM 20583]
 gi|260539633|gb|EEX20202.1| competence protein CelA [Blautia hansenii DSM 20583]
          Length = 201

 Score = 38.6 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 13/65 (20%)

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           I  N  D   L  +P VG+  AQ+I+E+ +       +E L +                 
Sbjct: 140 ININTADLTELQEIPGVGEKKAQSIMEYREACGGFQNIEQLQEVPGI------------- 186

Query: 648 ENKKL 652
           + K  
Sbjct: 187 KGKTF 191


>gi|296816345|ref|XP_002848509.1| BRCT domain-containing protein [Arthroderma otae CBS 113480]
 gi|238838962|gb|EEQ28624.1| BRCT domain-containing protein [Arthroderma otae CBS 113480]
          Length = 845

 Score = 38.6 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 4/42 (9%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 645 SEIENKKLVFT---GTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           +  + K ++ +   G  +++  +  ++ + + G  ++  +S+
Sbjct: 239 NIFKGKTVMISADLGIAERMT-NSIEQLIVEGGGKITNQVSK 279


>gi|215404349|ref|ZP_03416530.1| hypothetical protein Mtub0_11835 [Mycobacterium tuberculosis
           02_1987]
 gi|289758544|ref|ZP_06517922.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289714108|gb|EFD78120.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
          Length = 311

 Score = 38.6 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
           A +   ++  N      L  +P +G + A AIV + Q      +V+ L
Sbjct: 244 APKTAEVLDLNTATVEQLDALPGIGPVTAAAIVAWRQRNGRFTSVDQL 291


>gi|15841933|ref|NP_336970.1| hypothetical protein MT2488 [Mycobacterium tuberculosis CDC1551]
 gi|13882204|gb|AAK46784.1| comE operon protein 1, putative [Mycobacterium tuberculosis
           CDC1551]
          Length = 213

 Score = 38.6 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
           A +   ++  N      L  +P +G + A AIV + Q      +V+ L
Sbjct: 146 APKTAEVLDLNTATVEQLDALPGIGPVTAAAIVAWRQRNGRFTSVDQL 193


>gi|31793594|ref|NP_856087.1| hypothetical protein Mb2438c [Mycobacterium bovis AF2122/97]
 gi|121638296|ref|YP_978520.1| hypothetical protein BCG_2431c [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|215427797|ref|ZP_03425716.1| hypothetical protein MtubT9_15987 [Mycobacterium tuberculosis T92]
 gi|215431358|ref|ZP_03429277.1| hypothetical protein MtubE_11888 [Mycobacterium tuberculosis
           EAS054]
 gi|219558410|ref|ZP_03537486.1| hypothetical protein MtubT1_14342 [Mycobacterium tuberculosis T17]
 gi|224990790|ref|YP_002645477.1| hypothetical protein JTY_2425 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|260187421|ref|ZP_05764895.1| hypothetical protein MtubCP_15511 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201540|ref|ZP_05769031.1| hypothetical protein MtubT4_15842 [Mycobacterium tuberculosis T46]
 gi|260205718|ref|ZP_05773209.1| hypothetical protein MtubK8_15604 [Mycobacterium tuberculosis K85]
 gi|289443938|ref|ZP_06433682.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289448057|ref|ZP_06437801.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289570563|ref|ZP_06450790.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289575108|ref|ZP_06455335.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289751020|ref|ZP_06510398.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289754522|ref|ZP_06513900.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|31619187|emb|CAD97299.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493944|emb|CAL72419.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224773903|dbj|BAH26709.1| hypothetical protein JTY_2425 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289416857|gb|EFD14097.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289421015|gb|EFD18216.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289539539|gb|EFD44117.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289544317|gb|EFD47965.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289691607|gb|EFD59036.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289695109|gb|EFD62538.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
          Length = 297

 Score = 38.6 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
           A +   ++  N      L  +P +G + A AIV + Q      +V+ L
Sbjct: 230 APKTAEVLDLNTATVEQLDALPGIGPVTAAAIVAWRQRNGRFTSVDQL 277


>gi|15609552|ref|NP_216931.1| hypothetical protein Rv2415c [Mycobacterium tuberculosis H37Rv]
 gi|148662249|ref|YP_001283772.1| hypothetical protein MRA_2440 [Mycobacterium tuberculosis H37Ra]
 gi|148823618|ref|YP_001288372.1| hypothetical protein TBFG_12443 [Mycobacterium tuberculosis F11]
 gi|167969731|ref|ZP_02552008.1| hypothetical protein MtubH3_17590 [Mycobacterium tuberculosis
           H37Ra]
 gi|215412167|ref|ZP_03420931.1| hypothetical protein Mtub9_12572 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215446660|ref|ZP_03433412.1| hypothetical protein MtubT_12219 [Mycobacterium tuberculosis T85]
 gi|218754144|ref|ZP_03532940.1| hypothetical protein MtubG1_12249 [Mycobacterium tuberculosis GM
           1503]
 gi|254232553|ref|ZP_04925880.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254365190|ref|ZP_04981236.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551462|ref|ZP_05141909.1| hypothetical protein Mtube_13549 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289746196|ref|ZP_06505574.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289762582|ref|ZP_06521960.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|294994477|ref|ZP_06800168.1| hypothetical protein Mtub2_08173 [Mycobacterium tuberculosis 210]
 gi|298525897|ref|ZP_07013306.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306776682|ref|ZP_07415019.1| hypothetical protein TMAG_02974 [Mycobacterium tuberculosis
           SUMu001]
 gi|306780456|ref|ZP_07418793.1| hypothetical protein TMBG_00958 [Mycobacterium tuberculosis
           SUMu002]
 gi|306785206|ref|ZP_07423528.1| hypothetical protein TMCG_00514 [Mycobacterium tuberculosis
           SUMu003]
 gi|306789567|ref|ZP_07427889.1| hypothetical protein TMDG_00893 [Mycobacterium tuberculosis
           SUMu004]
 gi|306793893|ref|ZP_07432195.1| hypothetical protein TMEG_02781 [Mycobacterium tuberculosis
           SUMu005]
 gi|306798289|ref|ZP_07436591.1| hypothetical protein TMFG_01379 [Mycobacterium tuberculosis
           SUMu006]
 gi|306804164|ref|ZP_07440832.1| hypothetical protein TMHG_01609 [Mycobacterium tuberculosis
           SUMu008]
 gi|306968565|ref|ZP_07481226.1| hypothetical protein TMIG_01093 [Mycobacterium tuberculosis
           SUMu009]
 gi|306972794|ref|ZP_07485455.1| hypothetical protein TMJG_00683 [Mycobacterium tuberculosis
           SUMu010]
 gi|307080499|ref|ZP_07489669.1| hypothetical protein TMKG_00677 [Mycobacterium tuberculosis
           SUMu011]
 gi|307085097|ref|ZP_07494210.1| hypothetical protein TMLG_02167 [Mycobacterium tuberculosis
           SUMu012]
 gi|308375879|ref|ZP_07445403.2| hypothetical protein TMGG_00977 [Mycobacterium tuberculosis
           SUMu007]
 gi|1655644|emb|CAB03743.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|124601612|gb|EAY60622.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134150704|gb|EBA42749.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506401|gb|ABQ74210.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra]
 gi|148722145|gb|ABR06770.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|289686724|gb|EFD54212.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289710088|gb|EFD74104.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|298495691|gb|EFI30985.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214931|gb|EFO74330.1| hypothetical protein TMAG_02974 [Mycobacterium tuberculosis
           SUMu001]
 gi|308326692|gb|EFP15543.1| hypothetical protein TMBG_00958 [Mycobacterium tuberculosis
           SUMu002]
 gi|308330120|gb|EFP18971.1| hypothetical protein TMCG_00514 [Mycobacterium tuberculosis
           SUMu003]
 gi|308333960|gb|EFP22811.1| hypothetical protein TMDG_00893 [Mycobacterium tuberculosis
           SUMu004]
 gi|308337746|gb|EFP26597.1| hypothetical protein TMEG_02781 [Mycobacterium tuberculosis
           SUMu005]
 gi|308341434|gb|EFP30285.1| hypothetical protein TMFG_01379 [Mycobacterium tuberculosis
           SUMu006]
 gi|308344930|gb|EFP33781.1| hypothetical protein TMGG_00977 [Mycobacterium tuberculosis
           SUMu007]
 gi|308349241|gb|EFP38092.1| hypothetical protein TMHG_01609 [Mycobacterium tuberculosis
           SUMu008]
 gi|308353860|gb|EFP42711.1| hypothetical protein TMIG_01093 [Mycobacterium tuberculosis
           SUMu009]
 gi|308357806|gb|EFP46657.1| hypothetical protein TMJG_00683 [Mycobacterium tuberculosis
           SUMu010]
 gi|308361751|gb|EFP50602.1| hypothetical protein TMKG_00677 [Mycobacterium tuberculosis
           SUMu011]
 gi|308365361|gb|EFP54212.1| hypothetical protein TMLG_02167 [Mycobacterium tuberculosis
           SUMu012]
 gi|323719012|gb|EGB28161.1| hypothetical protein TMMG_01707 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904032|gb|EGE50965.1| hypothetical protein TBPG_01921 [Mycobacterium tuberculosis W-148]
          Length = 297

 Score = 38.6 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628
           A +   ++  N      L  +P +G + A AIV + Q      +V+ L
Sbjct: 230 APKTAEVLDLNTATVEQLDALPGIGPVTAAAIVAWRQRNGRFTSVDQL 277


>gi|329121128|ref|ZP_08249759.1| excinuclease ABC subunit C [Dialister micraerophilus DSM 19965]
 gi|327471290|gb|EGF16744.1| excinuclease ABC subunit C [Dialister micraerophilus DSM 19965]
          Length = 457

 Score = 38.6 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 14/40 (35%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           +N       +          L +V  +   +A+ I  F++
Sbjct: 402 KNLWAAFRTLDDMKKASVEELQKVKGINKKVAENIYNFFR 441


>gi|189209141|ref|XP_001940903.1| poly polymerase 2 ADP-ribosyltransferase 2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187976996|gb|EDU43622.1| poly polymerase 2 ADP-ribosyltransferase 2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 666

 Score = 38.6 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN----PGSKLEKAQ 702
           +    +  +G      +   Q  +T LGA  +  ++  T  +I  +       +K+  A 
Sbjct: 16  LSGYNIATSGRFSGTSQTAVQSRLTALGASTALSVTSDTTHLIATEKDYESNSTKVNAAA 75

Query: 703 QLGVKIMN 710
             GV ++ 
Sbjct: 76  THGVPVVT 83


>gi|304405665|ref|ZP_07387324.1| DNA integrity scanning, DisA, linker region [Paenibacillus
           curdlanolyticus YK9]
 gi|304345704|gb|EFM11539.1| DNA integrity scanning, DisA, linker region [Paenibacillus
           curdlanolyticus YK9]
          Length = 356

 Score = 38.6 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 21/51 (41%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
             N     +++       +  L  V  +G++ A+AI E  +  ++   ++ 
Sbjct: 304 MHNLVDRFHHLPHIVMATYEELDEVDGIGEVRARAIKEGLKRIQDQMFIDR 354


>gi|298710539|emb|CBJ25603.1| hypothetical protein Esi_0003_0311 [Ectocarpus siliculosus]
          Length = 1756

 Score = 38.6 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 644  SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678
                    +V TG L+   R + +  VT+LG  V 
Sbjct: 1262 GGPFSGLGVVLTG-LRGEMRSELEASVTKLGGKVV 1295


>gi|304360722|ref|YP_003856853.1| putative DNA ligase [Clostridium phage phiCTP1]
 gi|302495581|gb|ADL40361.1| putative DNA ligase [Clostridium phage phiCTP1]
          Length = 118

 Score = 38.6 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 28/63 (44%)

Query: 2  KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61
          KK+    ++  +  +  + ++   +++  H   YY+    II D+ ++   R    +   
Sbjct: 10 KKQTEEIVQDDNSRKIYELINRRRRQMLIHSIIYYRLDANIIDDTTFNVWGRELLDLQTK 69

Query: 62 FPD 64
          +P+
Sbjct: 70 YPE 72


>gi|297813705|ref|XP_002874736.1| hypothetical protein ARALYDRAFT_490014 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320573|gb|EFH50995.1| hypothetical protein ARALYDRAFT_490014 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 310

 Score = 38.6 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 36  YQYSKPIILDSEYDALKRRCD 56
           Y    PI+ D EYD LK +  
Sbjct: 136 YVSGNPILSDEEYDKLKMKLK 156


>gi|123966197|ref|YP_001011278.1| excinuclease ABC subunit C [Prochlorococcus marinus str. MIT 9515]
 gi|123200563|gb|ABM72171.1| Excinuclease ABC subunit C (UvrC) [Prochlorococcus marinus str. MIT
           9515]
          Length = 644

 Score = 38.6 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/100 (12%), Positives = 29/100 (29%), Gaps = 10/100 (10%)

Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579
              K   +L            S ++ +            I  +G+   + L +++ S   
Sbjct: 555 MNQKGVMLLRRLRDEAHRFALSFHRNKRSRRMNRSQLTQIPGLGSSRIKDLLEHFNSVDA 614

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
                             L++V  +G   A+ I +++   
Sbjct: 615 IRIASK----------EELMKVKGLGSNTAKDIYDYFNCD 644


>gi|319898416|ref|YP_004158509.1| methylenetetrahydrofolate dehydrogenase (NADP+) /
           methenyltetrahydrofolate cyclohydrolase [Bartonella
           clarridgeiae 73]
 gi|319402380|emb|CBI75919.1| methylenetetrahydrofolate dehydrogenase (NADP+) /
           methenyltetrahydrofolate cyclohydrolase [Bartonella
           clarridgeiae 73]
          Length = 299

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 14/54 (25%)

Query: 689 IVGDNP------GSKLEKAQQ---LGVK-IMN----EEQFLFLLQQYNTTLRIH 728
           IVGD+P       SK +KA++   L +K +M+    E++ L L++  N+  +IH
Sbjct: 39  IVGDDPASQIYVSSKSKKAEECGFLSIKHVMSKETQEKELLKLIETLNSDPKIH 92


>gi|307266005|ref|ZP_07547552.1| excinuclease ABC, C subunit [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918967|gb|EFN49194.1| excinuclease ABC, C subunit [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 615

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 10/87 (11%)

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
                 + +     ++  S         I  +G + A++L   + S +            
Sbjct: 538 QIQEEAHRFAITFHKKKQSKRFKSELFNIPGIGEKRAKALYDAFKSIEEIRSA------- 590

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                  L +V  + +  AQA+ E+++
Sbjct: 591 ---SLEDLKKVKGMNEKAAQAVYEYFR 614


>gi|299535125|ref|ZP_07048450.1| glutamate dehydrogenase [Lysinibacillus fusiformis ZC1]
 gi|298729442|gb|EFI69992.1| glutamate dehydrogenase [Lysinibacillus fusiformis ZC1]
          Length = 457

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 6/46 (13%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGT--LQKIQRHKAQEYVTQLGAVVS 678
            +    K+ +   E K +V +G+  +       A E   Q GA V 
Sbjct: 228 FVNEMLKDANDSFEGKTVVVSGSGNVSTY----AIEKAQQYGAKVV 269


>gi|255262958|ref|ZP_05342300.1| excinuclease ABC, C subunit [Thalassiobium sp. R2A62]
 gi|255105293|gb|EET47967.1| excinuclease ABC, C subunit [Thalassiobium sp. R2A62]
          Length = 630

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 10/88 (11%)

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
                       ++ +            +  VGA   R+L  ++ S            A 
Sbjct: 551 MRDEAHRFAIGTHRAKRSKAIGATPLDDVPGVGATRKRALLAHFGS----------AKAV 600

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
              +   L  V  +   +A+ I +++  
Sbjct: 601 GRANLADLKAVDGISSAMAETIYDYFHE 628


>gi|126654160|ref|ZP_01725973.1| glutamate dehydrogenase [Bacillus sp. B14905]
 gi|126589368|gb|EAZ83520.1| glutamate dehydrogenase [Bacillus sp. B14905]
          Length = 462

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 6/46 (13%)

Query: 635 SIGRHEKNVSSEIENKKLVFTGT--LQKIQRHKAQEYVTQLGAVVS 678
            +    K+ +   E K +V +G+  +       A E   Q GA V 
Sbjct: 233 FVNEMLKDANDSFEGKTVVVSGSGNVSTY----AIEKAQQYGAKVV 274


>gi|269792117|ref|YP_003317021.1| helicase, RecD/TraA family [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099752|gb|ACZ18739.1| helicase, RecD/TraA family [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 715

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 10/123 (8%)

Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570
             +   +     +      +G                  L R++ S  I  VG   AR +
Sbjct: 42  LPMAGERLVMEGRWTVHRRYGRQFCAEDVRMAMPSSLEGLVRYLSSGVIPKVGPSTARRI 101

Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV-EFYQNPRNICAVEALL 629
            +++             +   ++    L+ +P +G    + +   + ++ R   AV  LL
Sbjct: 102 VEHFK---------EETLDVLDNRVERLLEIPGIGPKRVEEVRLHWEEHRRRRQAVLQLL 152

Query: 630 KEV 632
              
Sbjct: 153 DFG 155


>gi|57222286|ref|NP_001009548.1| testase-8 [Mus musculus]
 gi|33186792|tpe|CAD66451.1| TPA: testase-8 [Mus musculus]
 gi|74221617|dbj|BAE21514.1| unnamed protein product [Mus musculus]
          Length = 760

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 41/411 (9%), Positives = 81/411 (19%), Gaps = 39/411 (9%)

Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218
              ++   +             I   +      Y    +F   +                
Sbjct: 353 IAHEIGHNLGMEHDSSSCTCGGINYCLM--SSTYSFNPEFSNCSYSNFWTTY-------- 402

Query: 219 AASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV---------- 268
           A +  LR+   +     + F  +G+    E    G   M ++ +C               
Sbjct: 403 ATTNCLRKEKMSIGNLQIQFCGNGVVDDGEQCDCGDRHMCERDQCCNSRCALNDGAACAF 462

Query: 269 ---------NNGVRQANTFHGIVSYYNEMKSIRSTLP---YDIDGLVYKVDEFSLQKQLG 316
                                               P   Y +DG   +   +  +K+  
Sbjct: 463 GLCCLYCQIMPAGTVCREEVNECDLPEWCNGHSHKCPNDVYLLDGSPCRDGGYCYEKRCN 522

Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT-PVARLEPVNIGGALITNATLHN 375
            R       I  K A     +   +++ Q  R G            +    L       N
Sbjct: 523 NRDEQ-CKQIFGKEARSADHSCYRELNTQGDRFGNCGMIRDAYLRCHDSDILCGRVQCEN 581

Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435
              I  L     V     +  V         G  IP +  +                   
Sbjct: 582 VTRIPFLRDHSTVHWTHLN-GVTCWGTDYHFGMTIPDIGIVKDGTDCGPEHVCINKKCV- 639

Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495
              S+ +      +        C     C   +     H +          G    +   
Sbjct: 640 ---SKPIWLEQCSSKTCTMKGVCNNLHHCHCNRGWDPPHCLESGFGGSVDSGPPPGEEES 696

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546
           +       I     I +L         +        +    +      +  
Sbjct: 697 QQHMDLVLITPILSIVSLVFLLPWLLNRYIRTSSKFEEPTVSTSKEEEESH 747


>gi|269959093|ref|YP_003328882.1| methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate
           cyclohydrolase [Anaplasma centrale str. Israel]
 gi|269848924|gb|ACZ49568.1| methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate
           cyclohydrolase [Anaplasma centrale str. Israel]
          Length = 299

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 14/55 (25%)

Query: 688 IIVGDNPGSKL------EKAQQLGV--KIM------NEEQFLFLLQQYNTTLRIH 728
           +IVGD+P SKL       KA++LG+  + +      ++E+ L ++ + N    +H
Sbjct: 38  VIVGDDPASKLYVGNKQRKAEELGLQSRTIALEHDTSQEELLRIIDELNRDAAVH 92


>gi|56416494|ref|YP_153568.1| methylenetetrahydrofolate dehydrogenase [Anaplasma marginale str.
           St. Maries]
 gi|222474863|ref|YP_002563278.1| methylenetetrahydrofolate dehydrogenase (folD) [Anaplasma marginale
           str. Florida]
 gi|254994718|ref|ZP_05276908.1| methylenetetrahydrofolate dehydrogenase (folD) [Anaplasma marginale
           str. Mississippi]
 gi|255002832|ref|ZP_05277796.1| methylenetetrahydrofolate dehydrogenase (folD) [Anaplasma marginale
           str. Puerto Rico]
 gi|81359278|sp|Q5PBL6|FOLD_ANAMM RecName: Full=Bifunctional protein FolD; Includes: RecName:
           Full=Methylenetetrahydrofolate dehydrogenase; Includes:
           RecName: Full=Methenyltetrahydrofolate cyclohydrolase
 gi|56387726|gb|AAV86313.1| methylenetetrahydrofolate dehydrogenase [Anaplasma marginale str.
           St. Maries]
 gi|222418999|gb|ACM49022.1| methylenetetrahydrofolate dehydrogenase (folD) [Anaplasma marginale
           str. Florida]
          Length = 299

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 14/55 (25%)

Query: 688 IIVGDNPGSKL------EKAQQLGV--KIM------NEEQFLFLLQQYNTTLRIH 728
           +IVGD+P SKL       KA++LG+  + +      ++E+ L ++ + N    +H
Sbjct: 38  VIVGDDPASKLYVGNKQRKAEELGLQSRTIALEHDTSQEELLRIIDELNRDAAVH 92


>gi|310830491|ref|YP_003965592.1| Helicase RecD/TraA [Paenibacillus polymyxa SC2]
 gi|309249958|gb|ADO59524.1| Helicase RecD/TraA [Paenibacillus polymyxa SC2]
          Length = 749

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 9/64 (14%)

Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEA---LLKEVSPSIGRHEKNVSSEIENK------K 651
           V  +G   AQ IV+++         E    LL+    S  R +       ++K       
Sbjct: 101 VKGIGKKTAQKIVDYFGEEALKRIEEDHRSLLQVGGISEVRAKAIQDKLFKHKRFEDVGT 160

Query: 652 LVFT 655
            V +
Sbjct: 161 FVLS 164


>gi|298675601|ref|YP_003727351.1| ERCC4 domain-containing protein [Methanohalobium evestigatum
           Z-7303]
 gi|298288589|gb|ADI74555.1| ERCC4 domain protein [Methanohalobium evestigatum Z-7303]
          Length = 759

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 10/56 (17%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           I  +G   ARSL KY+ S +N  +           ++  L    L+G   A  I E
Sbjct: 706 ISDIGPRAARSLLKYFGSVENIMKA----------NYEELQEAELIGPKTASKIRE 751


>gi|291550744|emb|CBL27006.1| excinuclease ABC, C subunit [Ruminococcus torques L2-14]
          Length = 617

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 10/61 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +G    ++L ++YLS                     L ++P + +  A+++ +F+ 
Sbjct: 567 DIEGIGPARRKALMRHYLSLDAIRSAT----------VEELAQLPSMNEKAAESVYQFFH 616

Query: 618 N 618
           +
Sbjct: 617 D 617


>gi|257898720|ref|ZP_05678373.1| competence protein ComEA [Enterococcus faecium Com15]
 gi|257836632|gb|EEV61706.1| competence protein ComEA [Enterococcus faecium Com15]
          Length = 225

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           I  N      L ++P +G + AQ I+ F +   +   VE L +         EK      
Sbjct: 164 ININTASPSELQQIPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKTVEKL----- 218

Query: 648 ENKKLV 653
             K  V
Sbjct: 219 --KNFV 222


>gi|283769391|ref|ZP_06342290.1| comEA protein [Bulleidia extructa W1219]
 gi|283104048|gb|EFC05432.1| comEA protein [Bulleidia extructa W1219]
          Length = 151

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 30/74 (40%)

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
           +         ++ + I+ N  D   L+++  VG  +AQ I+E+ +       +E L K  
Sbjct: 76  HDGDVLFLNSKVPSKISLNEADLKELMKLKGVGKKMAQRILEYRKEKGLFQKLEDLQKVK 135

Query: 633 SPSIGRHEKNVSSE 646
                ++E+     
Sbjct: 136 GIGDKKYEELKDQI 149


>gi|168187709|ref|ZP_02622344.1| DNA integrity scanning protein DisA [Clostridium botulinum C str.
           Eklund]
 gi|169294434|gb|EDS76567.1| DNA integrity scanning protein DisA [Clostridium botulinum C str.
           Eklund]
          Length = 355

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 7/44 (15%), Positives = 15/44 (34%)

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
              +       +  L  V  +G+  A+AI    +  R    ++ 
Sbjct: 310 FKELKEVMEASYEELDNVEGIGEARAKAIKNGLRRLREQFMIDK 353


>gi|86607132|ref|YP_475895.1| DNA protecting protein DprA [Synechococcus sp. JA-3-3Ab]
 gi|86555674|gb|ABD00632.1| DNA protecting protein DprA [Synechococcus sp. JA-3-3Ab]
          Length = 381

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 10/62 (16%)

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           ++    I+ +G    + LA+++ S +               D L L +V  +G  +AQAI
Sbjct: 26  WLAWAQIKGIGPHRLKRLAEFFGSLK----------QAWQADALDLQQVEGIGPTLAQAI 75

Query: 613 VE 614
           V 
Sbjct: 76  VS 77


>gi|326389756|ref|ZP_08211321.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus JW 200]
 gi|325994238|gb|EGD52665.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus JW 200]
          Length = 615

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 10/62 (16%)

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            L I  +G + A++L   + S +   +               L +V  + +  AQA+ E+
Sbjct: 563 LLNIPGIGEKRAKALYDAFKSIEEIKRA----------SVEDLKKVEGMNEKAAQAVYEY 612

Query: 616 YQ 617
           ++
Sbjct: 613 FR 614



 Score = 37.5 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 597 SLIRVPLVGDIIAQAIVEFYQ--NPRNICAVEALLK 630
            L+ +P +G+  A+A+ + ++        +VE L K
Sbjct: 562 ELLNIPGIGEKRAKALYDAFKSIEEIKRASVEDLKK 597


>gi|86139077|ref|ZP_01057648.1| UvrABC system protein C [Roseobacter sp. MED193]
 gi|85824308|gb|EAQ44512.1| UvrABC system protein C [Roseobacter sp. MED193]
          Length = 643

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 10/82 (12%)

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
                  ++ +            +  VGA   R+L K++ S            A +  D 
Sbjct: 569 HRFAIGTHRAKRAKAVGATPLDEVPGVGAGRKRALLKHFGS----------AKAVSRADL 618

Query: 596 LSLIRVPLVGDIIAQAIVEFYQ 617
           L L  V  + + +A+ I +F+ 
Sbjct: 619 LDLKAVDGISNALAETIYDFFH 640


>gi|256750641|ref|ZP_05491527.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750481|gb|EEU63499.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus CCSD1]
          Length = 615

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 10/62 (16%)

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            L I  +G + A++L   + S +   +               L +V  + +  AQA+ E+
Sbjct: 563 LLNIPGIGEKRAKALYDAFKSIEEIKRA----------SVEDLKKVEGMNEKAAQAVYEY 612

Query: 616 YQ 617
           ++
Sbjct: 613 FR 614



 Score = 37.9 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ--N 618
            + ++  R +A+       FA   +            L+ +P +G+  A+A+ + ++   
Sbjct: 527 PMTSKAFRLIAQIQEEAHRFAITFHKEKQSKRFK-SELLNIPGIGEKRAKALYDAFKSIE 585

Query: 619 PRNICAVEALLK 630
                +VE L K
Sbjct: 586 EIKRASVEDLKK 597


>gi|14250931|emb|CAC39227.1| UvrC protein [Eubacterium acidaminophilum]
          Length = 607

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 10/51 (19%)

Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619
            L  ++ S +N                  L  +  +   +A+ I  F++  
Sbjct: 561 LLISHFRSVENIRNA----------KLEELKAISGISAEVAERIYMFFREE 601


>gi|152976757|ref|YP_001376274.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025509|gb|ABS23279.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus cytotoxicus NVH 391-98]
          Length = 200

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 22/59 (37%)

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646
           I+ N      L  +  +G   A+AI+++ +       +E LL+         EK     
Sbjct: 139 ISINQASKEQLENITGIGPRKAEAIIKYREEHGAFQKIEDLLEIDGIGEKSLEKMKDQI 197


>gi|330789686|ref|XP_003282930.1| hypothetical protein DICPUDRAFT_146505 [Dictyostelium purpureum]
 gi|325087214|gb|EGC40594.1| hypothetical protein DICPUDRAFT_146505 [Dictyostelium purpureum]
          Length = 457

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 14/29 (48%)

Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDN 693
           + ++ V   G       ++KTD +IV  N
Sbjct: 118 EIKDIVKMCGGKFVDDFTKKTDYLIVKPN 146


>gi|294632854|ref|ZP_06711413.1| short-chain dehydrogenase/reductase family oxidoreductase
           [Streptomyces sp. e14]
 gi|292830635|gb|EFF88985.1| short-chain dehydrogenase/reductase family oxidoreductase
           [Streptomyces sp. e14]
          Length = 549

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664
           G  +A+ I EF  +     A +AL K             ++E   K +V TG    I R 
Sbjct: 240 GTTVARMIREFAAHQEGAPATDALAKA-QTGRADRPAGEAAEFAGKLVVVTGAGSGIGRA 298

Query: 665 KAQEYVTQLGA 675
            A  +    GA
Sbjct: 299 TALAFAE-RGA 308


>gi|196248984|ref|ZP_03147684.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Geobacillus sp. G11MC16]
 gi|196211860|gb|EDY06619.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Geobacillus sp. G11MC16]
          Length = 203

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
           A N      L++VP +G   A+AI+ + +       VE LL+         EK
Sbjct: 143 AVNTATAEELMQVPGIGPAKAKAIIAYREEHGPFQRVEDLLRVNGIGEKTLEK 195


>gi|138896090|ref|YP_001126543.1| late competence protein ComEA [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267603|gb|ABO67798.1| Late competence protein ComEA [Geobacillus thermodenitrificans
           NG80-2]
          Length = 203

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
           A N      L++VP +G   A+AI+ + +       VE LL+         EK
Sbjct: 143 AVNTATAEELMQVPGIGPAKAKAIIAYREEHGPFQRVEDLLRVNGIGEKTLEK 195


>gi|118443584|ref|YP_877173.1| DNA integrity scanning protein DisA [Clostridium novyi NT]
 gi|118134040|gb|ABK61084.1| Domain of unknown function DUF147 family protein [Clostridium novyi
           NT]
          Length = 355

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 7/44 (15%), Positives = 15/44 (34%)

Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
              +       +  L  V  +G+  A+AI    +  R    ++ 
Sbjct: 310 FKELKEVMEASYEELDNVEGIGEARAKAIKNGLRRLREQFMIDK 353


>gi|167036996|ref|YP_001664574.1| excinuclease ABC subunit C [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320115414|ref|YP_004185573.1| excinuclease ABC subunit C [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|229557871|sp|B0K791|UVRC_THEP3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|166855830|gb|ABY94238.1| excinuclease ABC, C subunit [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319928505|gb|ADV79190.1| excinuclease ABC, C subunit [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 615

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 10/62 (16%)

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            L I  +G + A++L   + S +   +               L +V  + +  AQA+ E+
Sbjct: 563 LLNIPGIGEKRAKALYDAFKSIEEIKRA----------SVEDLKKVEGMNEKAAQAVYEY 612

Query: 616 YQ 617
           ++
Sbjct: 613 FR 614



 Score = 37.9 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ--N 618
            + ++  R +A+       FA   +            L+ +P +G+  A+A+ + ++   
Sbjct: 527 PMTSKAFRLIAQIQEEAHRFAITFHKEKQSKRFK-SELLNIPGIGEKRAKALYDAFKSIE 585

Query: 619 PRNICAVEALLK 630
                +VE L K
Sbjct: 586 EIKRASVEDLKK 597


>gi|331028105|ref|YP_004421819.1| hypothetical protein RDJLphi1_gp51 [Roseobacter phage RDJL Phi 1]
 gi|301341568|gb|ADK73452.1| hypothetical protein RDJLphi1_gp51 [Roseobacter phage RDJL Phi 1]
          Length = 127

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 7/44 (15%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKR----RCDAIAH 60
          +    +++      YY+ +  +I D+E+D+L +      + +  
Sbjct: 5  IDLKARQVIMASWLYYEKNVSLISDAEFDSLCKVVAAELEWLDA 48


>gi|311743010|ref|ZP_07716818.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Aeromicrobium marinum DSM 15272]
 gi|311313690|gb|EFQ83599.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Aeromicrobium marinum DSM 15272]
          Length = 253

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629
             N      L  +P VG + A++I+ +        +V+ LL
Sbjct: 194 NLNTATAADLDELPGVGPVTAESILTWRAENGRFTSVDDLL 234


>gi|123187370|gb|ABM69262.1| unknown [Aeromonas hydrophila]
          Length = 106

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 20/56 (35%)

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
             N  +   L  +  +G+  AQAIV+F +       VE L           E N  
Sbjct: 46  NLNTANINELTALKGIGEKKAQAIVDFREKQGKFTTVEQLADVSGIGPATLEANRD 101


>gi|158312222|ref|YP_001504730.1| DNA integrity scanning protein DisA [Frankia sp. EAN1pec]
 gi|226729442|sp|A8LF79|DISA_FRASN RecName: Full=DNA integrity scanning protein disA
 gi|158107627|gb|ABW09824.1| protein of unknown function DUF147 [Frankia sp. EAN1pec]
          Length = 359

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 10/82 (12%)

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           R IS   +     +  +   +   L  ++ + Q                   L  V  VG
Sbjct: 286 RQISPRGYRMLAKVPRLPRMVVDRLVDHFSTLQKLLAA----------GVDDLQAVDGVG 335

Query: 606 DIIAQAIVEFYQNPRNICAVEA 627
           +  A+A+ E          +E 
Sbjct: 336 ETRARAVREGLSRLAESSILER 357


>gi|332657675|gb|AEE83075.1| PGR5-like protein 1B [Arabidopsis thaliana]
          Length = 296

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 36  YQYSKPIILDSEYDALKRRCD 56
           Y    PI+ D EYD LK +  
Sbjct: 122 YVSGNPILSDEEYDKLKMKLK 142


>gi|308071005|ref|YP_003872610.1| hypothetical protein PPE_04308 [Paenibacillus polymyxa E681]
 gi|305860284|gb|ADM72072.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 358

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 16/51 (31%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
             N  +               L  V  +G++ A+ I E  +  +    ++ 
Sbjct: 306 IHNLVERFGRFPHVITATIEELDEVDGIGEVRARTIKEGLKRLQEQVFIDR 356


>gi|258517046|ref|YP_003193268.1| excinuclease ABC subunit C [Desulfotomaculum acetoxidans DSM 771]
 gi|257780751|gb|ACV64645.1| excinuclease ABC, C subunit [Desulfotomaculum acetoxidans DSM 771]
          Length = 624

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/147 (10%), Positives = 44/147 (29%), Gaps = 14/147 (9%)

Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535
           +S     ++ LG   +  F  ++      +          R   +   ++ +        
Sbjct: 492 LSAARSVMQELGFAHIPAFGLAKQEELLFKEGEKEPVFLPRDSHALYLVQRLRDEAHRFA 551

Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595
              +  +  +RN+          +  +G +  R L K + S ++ ++             
Sbjct: 552 VTYHRQLRSKRNLKS----LLDEVDGIGPKRRRELLKAFGSLEDISRAGLG--------- 598

Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNI 622
             L  V  +    A+A+  ++      
Sbjct: 599 -ELSAVEGMNKKAAEAVYNYFHQKEEK 624


>gi|167039707|ref|YP_001662692.1| excinuclease ABC subunit C [Thermoanaerobacter sp. X514]
 gi|300915044|ref|ZP_07132359.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X561]
 gi|307724967|ref|YP_003904718.1| excinuclease ABC subunit C [Thermoanaerobacter sp. X513]
 gi|229557872|sp|B0K680|UVRC_THEPX RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|166853947|gb|ABY92356.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X514]
 gi|300888768|gb|EFK83915.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X561]
 gi|307582028|gb|ADN55427.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X513]
          Length = 615

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 10/62 (16%)

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            L I  +G + A++L   + S +   +               L +V  + +  AQA+ E+
Sbjct: 563 LLNIPGIGKKRAKALYDAFKSIEEIKRA----------SVEDLKKVEGMNEKAAQAVYEY 612

Query: 616 YQ 617
           ++
Sbjct: 613 FR 614


>gi|295133972|ref|YP_003584648.1| NAD-dependent DNA ligase [Zunongwangia profunda SM-A87]
 gi|294981987|gb|ADF52452.1| NAD-dependent DNA ligase [Zunongwangia profunda SM-A87]
          Length = 148

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 14/121 (11%)

Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673
            F+ +P +I               + +  + +  E KK+VF G L        +  +   
Sbjct: 24  HFFNSPEDI-------SHTMEKDTKADSEIENGFEGKKVVFDGELDAYIEENIKNELRNK 76

Query: 674 GAVVSAILSRKTDIIIVGDNPGSK----LEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729
            A+V   ++  T+ +I G NP       +E+A+ LGV I NE  +   + +  T L    
Sbjct: 77  HAIVEDKMAEDTNFLITGKNP---DWLVVEEAKDLGVTIFNEMDWQNTVHKIETNLSAET 133

Query: 730 D 730
            
Sbjct: 134 K 134


>gi|110834601|ref|YP_693460.1| ComEA-like protein [Alcanivorax borkumensis SK2]
 gi|110647712|emb|CAL17188.1| ComEA-related protein [Alcanivorax borkumensis SK2]
          Length = 107

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%)

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           I  N  D   L ++  VG   AQAI++F        + + LL          EK     +
Sbjct: 46  INLNTADITELEKLNGVGPKTAQAIIDFRNAQGGFTSPDQLLAIKGIGEKTLEKMRDQIV 105


>gi|86608165|ref|YP_476927.1| DNA protecting protein DprA [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556707|gb|ABD01664.1| DNA protecting protein DprA [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 385

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           ++    I+ +G    + LA+++ S +               D  +L +V  +G  +AQAI
Sbjct: 30  WLAWARIKGIGPHRLKRLAEFFGSLER----------AWQADAPALRQVEGIGPTLAQAI 79

Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
           V           +E  LK   P +   + +
Sbjct: 80  VSARPGLDPEQILEETLKAGIPFLTPADPD 109


>gi|289434764|ref|YP_003464636.1| DNA-binding protein, ComEA family [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289171008|emb|CBH27550.1| DNA-binding protein, ComEA family [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 202

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%)

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
           +     I  N      L  VP +G+  A AI+E+ +       +E L K         EK
Sbjct: 135 ETTEEKININTASTSDLQTVPGIGESKATAIIEYREKEGLFQTIEDLQKVTGIGEKTIEK 194


>gi|253826950|ref|ZP_04869835.1| hypothetical protein HCAN_0297 [Helicobacter canadensis MIT
           98-5491]
 gi|253510356|gb|EES89015.1| hypothetical protein HCAN_0297 [Helicobacter canadensis MIT
           98-5491]
          Length = 82

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626
            + L   +L+       ++     N  +   L+ +  +G+  AQAI+++ +      +++
Sbjct: 1   MKLLVALFLALSFLFGAVD----LNKANKEELMSIKGIGEAKAQAIIDY-REKTPFKSID 55

Query: 627 ALLK 630
            L  
Sbjct: 56  DLKN 59


>gi|293571939|ref|ZP_06682953.1| ComE operon protein 1 [Enterococcus faecium E980]
 gi|291607957|gb|EFF37265.1| ComE operon protein 1 [Enterococcus faecium E980]
          Length = 192

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           I  N      L ++P +G + AQ I+ F +   +   VE L +         EK      
Sbjct: 131 ININTASPSELQQIPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKTVEKL----- 185

Query: 648 ENKKLV 653
             K  V
Sbjct: 186 --KNFV 189


>gi|229165072|ref|ZP_04292867.1| DNA integrity scanning protein disA [Bacillus cereus AH621]
 gi|228618335|gb|EEK75365.1| DNA integrity scanning protein disA [Bacillus cereus AH621]
          Length = 347

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/184 (9%), Positives = 50/184 (27%), Gaps = 15/184 (8%)

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           + +      +   +         +    +    +  ++         +  Q  +     E
Sbjct: 162 TNLGILEFEEVVTMSEVVHVLHSVEMVLRIKNEIVSYIHELGTEGRLIRLQLTELLADLE 221

Query: 499 -DPAFSIRIPADIFTLQRRQQ----TSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            + A  I+      T    Q           + +     V +      ++   +++   +
Sbjct: 222 AEAALLIKDYYQEKTQDHHQILKKLQDLANTQLLEDSDLVKLLGYPGQMSLEESVTPRGY 281

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
             +  I  V   I  +L   + + Q   +               L  V  +G++ A+ I 
Sbjct: 282 RIASKISRVPPLIIENLINRFKTLQGVCRAT----------INELDDVEGIGEVRAKKIR 331

Query: 614 EFYQ 617
           E  +
Sbjct: 332 EGLK 335


>gi|78044921|ref|YP_359263.1| competence protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997036|gb|ABB15935.1| competence protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 204

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 19/60 (31%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              +  N      L  +P VG   A  I+E+ +       +E L K       + E    
Sbjct: 140 EAKVNINTATAEELDELPGVGPATAAKIIEYREQNGPFATIEDLKKVKGIGDKKFETLKD 199


>gi|313891874|ref|ZP_07825479.1| excinuclease ABC, C subunit [Dialister microaerophilus UPII 345-E]
 gi|313119868|gb|EFR43055.1| excinuclease ABC, C subunit [Dialister microaerophilus UPII 345-E]
          Length = 617

 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 14/40 (35%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           +N       +          L +V  +   +A+ I  F++
Sbjct: 562 KNLWAAFRTLDEMKKASVEELQKVKGINKKVAENIYNFFR 601


>gi|300871639|ref|YP_003786512.1| excinuclease ABC subunit C [Brachyspira pilosicoli 95/1000]
 gi|300689340|gb|ADK32011.1| excinuclease ABC, C subunit [Brachyspira pilosicoli 95/1000]
          Length = 610

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/114 (11%), Positives = 31/114 (27%), Gaps = 13/114 (11%)

Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563
           I +P     +Q             +        N      + R +          I  +G
Sbjct: 509 IYLPNRETPVQLNDNEPARLFLQKVRDETHRWVNTSHGRKRSREMVKSE---LEKIEGLG 565

Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            +    L  ++++  N            N    ++  +P +   +A  I  ++ 
Sbjct: 566 KKGIEKLYSHFINIDNI----------KNASLDNIANIPGISYKVANNIYNYFH 609


>gi|255645443|gb|ACU23217.1| unknown [Glycine max]
          Length = 321

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 36  YQYSKPIILDSEYDALKRRCD 56
           Y   KPI+ D E+D LK R  
Sbjct: 147 YVSGKPIMSDKEFDELKLRLK 167


>gi|116074853|ref|ZP_01472114.1| excinuclease ABC subunit C [Synechococcus sp. RS9916]
 gi|116068075|gb|EAU73828.1| excinuclease ABC subunit C [Synechococcus sp. RS9916]
          Length = 656

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +G +  R L  ++ S                     L   P VG  +AQ I +++ 
Sbjct: 589 DIPGLGPKRIRDLLAHFNSIDAIQLA----------SVDQLSVAPGVGPSLAQQIRDYFH 638


>gi|50914521|ref|YP_060493.1| COME operon protein 1 [Streptococcus pyogenes MGAS10394]
 gi|50903595|gb|AAT87310.1| COME operon protein 1 [Streptococcus pyogenes MGAS10394]
          Length = 220

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 18/58 (31%)

Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
            N      L  +P +G   AQ I++         A+E L +         EK      
Sbjct: 161 INKASLEELQHIPGIGAKRAQDIIDMRDKLGGFKALEDLRQASGIGEKTLEKLKDDIF 218


>gi|261207706|ref|ZP_05922391.1| competence protein ComEA [Enterococcus faecium TC 6]
 gi|260078089|gb|EEW65795.1| competence protein ComEA [Enterococcus faecium TC 6]
          Length = 211

 Score = 38.2 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           I  N      L ++P +G + AQ I+ F +   +   VE L +         EK      
Sbjct: 150 ININTATPSELQQIPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKTVEKL----- 204

Query: 648 ENKKLV 653
             K  V
Sbjct: 205 --KNFV 208


>gi|168483024|ref|ZP_02707976.1| competence protein CelA [Streptococcus pneumoniae CDC1873-00]
 gi|172043553|gb|EDT51599.1| competence protein CelA [Streptococcus pneumoniae CDC1873-00]
 gi|332201420|gb|EGJ15490.1| comEA family protein [Streptococcus pneumoniae GA47368]
          Length = 216

 Score = 38.2 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 38/101 (37%)

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             ++++L + +    + +V  +   ++++   S    +      +  N      L +V  
Sbjct: 111 DSKSLNLAQKVSDEALVYVPTKGEEAVSQQTGSGTASSTSKEKKVNLNKASLEELKQVKG 170

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
           +G   AQ I+++ +      +V+ L K         EK   
Sbjct: 171 LGGKRAQDIIDYREANGKFKSVDELKKVSGIGAKTIEKLKD 211


>gi|328883258|emb|CCA56497.1| DNA integrity scanning protein disA [Streptomyces venezuelae ATCC
           10712]
          Length = 352

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +  +   I   L +++   Q                   L  V  VG+  A+++ E    
Sbjct: 292 VPRLPGAIIERLVEHFGGLQKLLAA----------SVDDLQTVDGVGEARARSVREGLSR 341

Query: 619 PRNICAVEA 627
                 +E 
Sbjct: 342 LAESSILER 350


>gi|302535146|ref|ZP_07287488.1| DNA-binding protein [Streptomyces sp. C]
 gi|302444041|gb|EFL15857.1| DNA-binding protein [Streptomyces sp. C]
          Length = 374

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +  +   I   L +++   Q                   L  V  VG+  A+++ E    
Sbjct: 314 VPRLPGAIIERLVEHFGGLQKLLAA----------SVDDLQTVDGVGEARARSVREGLSR 363

Query: 619 PRNICAVEA 627
                 +E 
Sbjct: 364 LAESSILER 372


>gi|282866879|ref|ZP_06275913.1| protein of unknown function DUF147 [Streptomyces sp. ACTE]
 gi|282558278|gb|EFB63846.1| protein of unknown function DUF147 [Streptomyces sp. ACTE]
          Length = 352

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +  +   I   L +++   Q                   L  V  VG+  A+++ E    
Sbjct: 292 VPRLPGAIIERLVEHFGGLQKLLAA----------SVDDLQTVDGVGEARARSVREGLSR 341

Query: 619 PRNICAVEA 627
                 +E 
Sbjct: 342 LAESSILER 350


>gi|239942184|ref|ZP_04694121.1| DNA integrity scanning protein DisA [Streptomyces roseosporus NRRL
           15998]
 gi|239988650|ref|ZP_04709314.1| DNA integrity scanning protein DisA [Streptomyces roseosporus NRRL
           11379]
 gi|291445638|ref|ZP_06585028.1| DNA integrity scanning protein disA [Streptomyces roseosporus NRRL
           15998]
 gi|291348585|gb|EFE75489.1| DNA integrity scanning protein disA [Streptomyces roseosporus NRRL
           15998]
          Length = 374

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +  +   I   L +++   Q                   L  V  VG+  A+++ E    
Sbjct: 314 VPRLPGAIIERLVEHFGGLQKLLAA----------SVDDLQTVDGVGEARARSVREGLSR 363

Query: 619 PRNICAVEA 627
                 +E 
Sbjct: 364 LAESSILER 372


>gi|254386483|ref|ZP_05001786.1| DNA-binding protein [Streptomyces sp. Mg1]
 gi|194345331|gb|EDX26297.1| DNA-binding protein [Streptomyces sp. Mg1]
          Length = 374

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +  +   I   L +++   Q                   L  V  VG+  A+++ E    
Sbjct: 314 VPRLPGAIIERLVEHFGGLQKLLAA----------SVDDLQTVDGVGEARARSVREGLSR 363

Query: 619 PRNICAVEA 627
                 +E 
Sbjct: 364 LAESSILER 372


>gi|182437921|ref|YP_001825640.1| DNA integrity scanning protein DisA [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326778557|ref|ZP_08237822.1| DNA integrity scanning protein disA [Streptomyces cf. griseus
           XylebKG-1]
 gi|226729443|sp|B1VSK3|DISA_STRGG RecName: Full=DNA integrity scanning protein disA
 gi|178466437|dbj|BAG20957.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326658890|gb|EGE43736.1| DNA integrity scanning protein disA [Streptomyces cf. griseus
           XylebKG-1]
          Length = 374

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +  +   I   L +++   Q                   L  V  VG+  A+++ E    
Sbjct: 314 VPRLPGAIIERLVEHFGGLQKLLAA----------SVDDLQTVDGVGEARARSVREGLSR 363

Query: 619 PRNICAVEA 627
                 +E 
Sbjct: 364 LAESSILER 372


>gi|320586352|gb|EFW99031.1| 3-ketosphinganine reductase [Grosmannia clavigera kw1407]
          Length = 350

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677
            +E K ++ TG  + + R  A++     GA V
Sbjct: 35  PVEGKTVLLTGATEGMGRSVAKQLA-AQGADV 65


>gi|255526680|ref|ZP_05393584.1| DNA protecting protein DprA [Clostridium carboxidivorans P7]
 gi|296185600|ref|ZP_06854009.1| DNA protecting protein DprA [Clostridium carboxidivorans P7]
 gi|255509612|gb|EET85948.1| DNA protecting protein DprA [Clostridium carboxidivorans P7]
 gi|296049728|gb|EFG89153.1| DNA protecting protein DprA [Clostridium carboxidivorans P7]
          Length = 364

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 10/62 (16%)

Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612
           +I+     ++G  I + L + + + +N              D   L+ V  +G+  A  I
Sbjct: 5   WIWLSETPNIGDVIGKKLLEEFKTPKNIFDA----------DKEELMNVEGIGEKTANLI 54

Query: 613 VE 614
             
Sbjct: 55  FN 56


>gi|293610396|ref|ZP_06692697.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827628|gb|EFF85992.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 134

 Score = 38.2 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
             + +  I  N  +   L ++  +G+  AQAIVE+ Q       ++             E
Sbjct: 67  MTDSSGQIHLNQANIDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFE 126

Query: 641 KNV 643
           KN 
Sbjct: 127 KNK 129


>gi|221124238|ref|XP_002159098.1| PREDICTED: similar to peroxisomal trans 2-enoyl CoA reductase
           [Hydra magnipapillata]
 gi|260219954|emb|CBA27008.1| Peroxisomal trans-2-enoyl-CoA reductase [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 294

 Score = 38.2 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 16/71 (22%)

Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
                  K +V TG    I R  A E    LGA V+          ++G  P  KLEKA 
Sbjct: 8   APGLFAGKVVVITGGGSGIGRCTAHELA-ALGATVA----------LIGRKP-EKLEKAA 55

Query: 703 QLGVKIMNEEQ 713
                 + E+ 
Sbjct: 56  ----TEITEDG 62


>gi|194017433|ref|ZP_03056044.1| DNA integrity scanning protein [Bacillus pumilus ATCC 7061]
 gi|194010705|gb|EDW20276.1| DNA integrity scanning protein [Bacillus pumilus ATCC 7061]
          Length = 359

 Score = 38.2 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/194 (8%), Positives = 48/194 (24%), Gaps = 15/194 (7%)

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           S +      +                  +    +  ++         +  Q  +     E
Sbjct: 174 STLSALEFEELVTFGDVLSVLHRYEMVLRIKNEINMYIKELGTEGHLIRLQVNELITDME 233

Query: 499 DPAFS-----IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
             A       ++       +  +Q    +  E +       +     S N    +    +
Sbjct: 234 QEAALFIKDYVKEKIKDPYVLLKQLQDMSSFELLDDSILYKLLGYPVSTNIDEYVYTRGY 293

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
                I  +   I  ++ + +       +           D   L  V  +G++ A+ I 
Sbjct: 294 RLLHKIPRLPMPIVENVVEAFGVLDRIMEA----------DVQDLDEVEGIGEVRAKKIK 343

Query: 614 EFYQNPRNICAVEA 627
           +  +  +    ++ 
Sbjct: 344 KGLKRLQEKHYIDR 357


>gi|291166051|gb|EFE28097.1| excinuclease ABC subunit C [Filifactor alocis ATCC 35896]
          Length = 618

 Score = 38.2 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 13/128 (10%)

Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
           F   +D     +       L    + S           +V    +    + R        
Sbjct: 490 FGLYKDDKHRTKGICSDEELFEIDKKSDVYKLIYAIQEEVHRFAIEYHRSLREKHLSRSE 549

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
           +    I  VG++    L K + S +N  ++              L  V  +    A+ IV
Sbjct: 550 LD--DIPGVGSKKKMILLKEFKSVKNIKEKTE----------EELSAVKGIDRRTAKNIV 597

Query: 614 EFYQNPRN 621
           E++ + +N
Sbjct: 598 EYF-DKKN 604


>gi|317126829|ref|YP_004093111.1| DNA integrity scanning, DisA, linker region [Bacillus
           cellulosilyticus DSM 2522]
 gi|315471777|gb|ADU28380.1| DNA integrity scanning, DisA, linker region [Bacillus
           cellulosilyticus DSM 2522]
          Length = 360

 Score = 38.2 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 17/51 (33%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +N   +   +      +   L  V  +G+  A+ I E     +    ++ 
Sbjct: 308 VENLIDKFIELPEIMRANIEELDEVDGIGEARARKIKEGLTRIQEQLFIDR 358


>gi|206895893|ref|YP_002247838.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738510|gb|ACI17588.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 253

 Score = 38.2 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 10/52 (19%)

Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYV-TQLGAVVSAILSRKTDIIIVGDNP 694
             ++  K +V TG    + R  A   +  Q GA V A      D +  G+  
Sbjct: 2   DGKLYGKVVVITGAGSGMGR--AASIIFAQEGAKVVA-----VDYV--GETA 44


>gi|134045229|ref|YP_001096715.1| Hef nuclease [Methanococcus maripaludis C5]
 gi|132662854|gb|ABO34500.1| ERCC4 domain protein [Methanococcus maripaludis C5]
          Length = 749

 Score = 38.2 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
           G+  VG  +A +L   + S +N                  L  V  +G + A+ I E
Sbjct: 695 GLPDVGPVMAENLLDNFNSVENIFTATE----------EELKAVEGMGPVTAKKIKE 741


>gi|316933006|ref|YP_004107988.1| short-chain dehydrogenase/reductase SDR [Rhodopseudomonas palustris
           DX-1]
 gi|315600720|gb|ADU43255.1| short-chain dehydrogenase/reductase SDR [Rhodopseudomonas palustris
           DX-1]
          Length = 257

 Score = 38.2 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683
           +  K  V TG+ + I R  A E + +LGA V   +S 
Sbjct: 8   LSGKVAVITGSSRGIGRASA-ELLAKLGAKVV--VSS 41


>gi|148977675|ref|ZP_01814236.1| hypothetical protein VSWAT3_15249 [Vibrionales bacterium SWAT-3]
 gi|145963043|gb|EDK28312.1| hypothetical protein VSWAT3_15249 [Vibrionales bacterium SWAT-3]
          Length = 1553

 Score = 38.2 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 14/104 (13%)

Query: 40  KPII-LDS-EYDALKRRCDA---IAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94
            P I  D  + D+L     +        PDL  S +   P      E+  S      + P
Sbjct: 890 NPEIESDELDIDSLLSENTSVDVFEQEQPDLEPSPELGSP-----EEIATSFESEA-TSP 943

Query: 95  TLSLEKIWNIED--LRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136
             SL  I + ++  +  ++       +   +    F  EPKI G
Sbjct: 944 -ASLGDISDDDEDTVEDWLAEAINDVESPSNIDSDFDFEPKIQG 986


>gi|294656307|ref|XP_458570.2| DEHA2D02354p [Debaryomyces hansenii CBS767]
 gi|199431369|emb|CAG86702.2| DEHA2D02354p [Debaryomyces hansenii]
          Length = 647

 Score = 38.2 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 19/44 (43%)

Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709
             + ++  G   +  L+     II  +  G +  KA + G+ ++
Sbjct: 135 MIQLISDNGGKATDSLTMSNSCIITTEKTGKRYTKAVEWGIPVI 178


>gi|313633203|gb|EFS00081.1| ComE operon protein 1 [Listeria seeligeri FSL N1-067]
          Length = 202

 Score = 38.2 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 22/60 (36%)

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
           ++    I  N      L  VP +G+  A AI+E+ +       +E L           EK
Sbjct: 135 EKTEEKININTASTSDLQTVPGIGESKATAIIEYREKEGLFQTIEDLQNVTGIGEKTIEK 194


>gi|297526642|ref|YP_003668666.1| ERCC4 domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255558|gb|ADI31767.1| ERCC4 domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 234

 Score = 38.2 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
                 +Y    +++ +SL+  I  +    VG  +AR L + + + +N A          
Sbjct: 152 RTEEKRIYRMRVEKKPMSLKDRILYVAESIVGPTLARKLLREFKTLRNIANA-------- 203

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
                 L+ V  +G+  A  I   +    
Sbjct: 204 --SVKELMVVEGIGEKRANEIYLIFNTEW 230


>gi|307709136|ref|ZP_07645595.1| comE operon protein 1 [Streptococcus mitis SK564]
 gi|307620082|gb|EFN99199.1| comE operon protein 1 [Streptococcus mitis SK564]
          Length = 216

 Score = 37.9 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 38/101 (37%)

Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603
             ++++L + +    + +V  +   + ++ + S  + +      +  N      L +V  
Sbjct: 111 DSKSLNLAQKVSDEALVYVPTKGEEATSQQFGSGTDSSTSKEKKVNLNKASLEELKQVKG 170

Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
           +G   AQ I++  +      +V+ L K         EK   
Sbjct: 171 LGGKRAQDIIDHRETNGKFKSVDELKKVSGIGAKTIEKLKD 211


>gi|260782865|ref|XP_002586501.1| hypothetical protein BRAFLDRAFT_213741 [Branchiostoma floridae]
 gi|229271615|gb|EEN42512.1| hypothetical protein BRAFLDRAFT_213741 [Branchiostoma floridae]
          Length = 753

 Score = 37.9 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 26/303 (8%), Positives = 64/303 (21%), Gaps = 23/303 (7%)

Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212
            RG    G D    + +        + +     +   E     +      +    +G   
Sbjct: 390 TRGSYICGCDFGYNVDSNGLDCNGNNQDYFYNSQYTNECDQPDSCH-THAECTNNIGSYS 448

Query: 213 YANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272
            +             N  +    L+  + GLG   +                G    +  
Sbjct: 449 CSCNTGYRGHGTVCNNVDECDELLDSCLPGLGICIDNPGSYSCACRDGYVGDGVTCEDID 508

Query: 273 RQ----------ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ---------- 312
                            G  +   +     +   ++ + +    ++              
Sbjct: 509 ECLTDNDKCSDDCFNTEGSYTCRCKDGYRLAVDGFNCNDIDECAEKIDNCEQVCTNTEGG 568

Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372
                 +       S +  + + S+  ++   Q+        +       + G      T
Sbjct: 569 FNCSCASGFTNVRDSCQGNKNECSSDTMNACDQLCNNTDGGYMCGCYRGFMIGTDDRTCT 628

Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432
             + D     + +        D   G      R G           +E        +  S
Sbjct: 629 --DVDECAKNELNDCDPNALCDNNQGGYTCSCRQGYTGNGTFCTDEDECTEGKHTCTENS 686

Query: 433 FCP 435
            C 
Sbjct: 687 VCM 689


>gi|313637785|gb|EFS03136.1| ComE operon protein 1 [Listeria seeligeri FSL S4-171]
          Length = 201

 Score = 37.9 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 22/60 (36%)

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
           ++    I  N      L  VP +G+  A AI+E+ +       +E L           EK
Sbjct: 134 EKTEEKININTASTSDLQTVPGIGESKATAIIEYREKEGLFQTIEDLQNVTGIGEKTIEK 193


>gi|297545157|ref|YP_003677459.1| excinuclease ABC subunit C [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842932|gb|ADH61448.1| excinuclease ABC, C subunit [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 615

 Score = 37.9 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ--N 618
            +  +  R +A+       FA   +            L+ +P +G+  A+A+ + +    
Sbjct: 527 PMTTKAFRLIAQIQEEAHRFAITFHKEKQSKRFK-SELLNIPGIGEKRAKALYDAFNSIE 585

Query: 619 PRNICAVEALLK 630
                +VE L K
Sbjct: 586 EIKRASVEDLKK 597


>gi|220905823|ref|YP_002481134.1| excinuclease ABC subunit C [Cyanothece sp. PCC 7425]
 gi|254764930|sp|B8HSX6|UVRC_CYAP4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|219862434|gb|ACL42773.1| excinuclease ABC, C subunit [Cyanothece sp. PCC 7425]
          Length = 624

 Score = 37.9 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 10/59 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           I  +G E  + L   + S     +               L  VPL+G  +AQ I +++ 
Sbjct: 575 IPGLGYERQKQLLAAFRSIDYIREA----------SPEQLATVPLIGPRLAQQIYDYFH 623


>gi|195454731|ref|XP_002074376.1| GK10569 [Drosophila willistoni]
 gi|194170461|gb|EDW85362.1| GK10569 [Drosophila willistoni]
          Length = 841

 Score = 37.9 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 25/339 (7%), Positives = 68/339 (20%), Gaps = 6/339 (1%)

Query: 171 PTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM--IAVGRKPYANPRNAASGILRRLN 228
                  +        +  E    K      +        G        +  +    +  
Sbjct: 410 DCGKHACNRKCCGDQCLPCEKICGKPLSCNKHKCQSVCHRGPCYPCRLESVVNCRCGKTR 469

Query: 229 PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM 288
                       +   +   I AK  + +  +      P     ++    + +    +  
Sbjct: 470 RHVPCGRERNTRNLCLELCRISAKCHHFVEHRCHKGDCP--PCRQKCGLPNDVSGCGHIC 527

Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348
           K++        +     +     +    +    PR   S           +         
Sbjct: 528 KAVCHEAVKVKNQKTLNIKTQIKKTYEYKVFPHPRCEESVNVKCIGGHEVITTPCWNSKP 587

Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVK-RAG 407
           T       R+         +T  T+ N + ++          G    R         ++ 
Sbjct: 588 TSCYRKCGRVLKCGNHQCNLTCHTVPNLESMEQQVGCINCEEGCVRPRSSGCSHPCPKSC 647

Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467
            + P     ++ +             C    +           K      C      +  
Sbjct: 648 HLPPCSPCSVLLKSKCHCGLIQVMYKCSEFFNDTASIQEQLEQKERLG-SCGNRCIKNFP 706

Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506
              R              L ++++  +   +     I  
Sbjct: 707 CGHRCLADCHSGICPGPELCRKKVRIYCPCKTLKQEISC 745


>gi|255523402|ref|ZP_05390371.1| excinuclease ABC, C subunit [Clostridium carboxidivorans P7]
 gi|296184685|ref|ZP_06853096.1| excinuclease ABC subunit C [Clostridium carboxidivorans P7]
 gi|255512860|gb|EET89131.1| excinuclease ABC, C subunit [Clostridium carboxidivorans P7]
 gi|296050467|gb|EFG89890.1| excinuclease ABC subunit C [Clostridium carboxidivorans P7]
          Length = 622

 Score = 37.9 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I +VG +  + L K + S +N               +  LI+VP +    A++I+E+++
Sbjct: 569 DIPNVGEKRRKELLKSFGSIENI----------KVAKYEELIKVPSIDRKAAESIIEYFR 618


>gi|328870578|gb|EGG18952.1| hypothetical protein DFA_02692 [Dictyostelium fasciculatum]
          Length = 412

 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI-----MNE 711
            K  E + + G  ++  +++KT I+I  D+    + KA  L V +     ++E
Sbjct: 23  DKLVEKIEEAGGTIARAINKKTTIVIC-DDISVDVSKATTLSVPVAKSEYISE 74


>gi|315649732|ref|ZP_07902816.1| DNA integrity scanning protein DisA [Paenibacillus vortex V453]
 gi|315274920|gb|EFU38296.1| DNA integrity scanning protein DisA [Paenibacillus vortex V453]
          Length = 358

 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 22/51 (43%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +N   + +++ +  +     L  V  +G++ A+ I E  +  +    ++ 
Sbjct: 306 IRNLVDQFHDLSSIMSASIHELDEVDGIGEVRARTIKEGLKRLQEQVFIDR 356


>gi|163938091|ref|YP_001642975.1| DNA integrity scanning protein DisA [Bacillus weihenstephanensis
           KBAB4]
 gi|229009593|ref|ZP_04166819.1| DNA integrity scanning protein disA [Bacillus mycoides DSM 2048]
 gi|229053930|ref|ZP_04195364.1| DNA integrity scanning protein disA [Bacillus cereus AH603]
 gi|229131091|ref|ZP_04260003.1| DNA integrity scanning protein disA [Bacillus cereus BDRD-ST196]
 gi|226729435|sp|A9VN96|DISA_BACWK RecName: Full=DNA integrity scanning protein disA
 gi|163860288|gb|ABY41347.1| protein of unknown function DUF147 [Bacillus weihenstephanensis
           KBAB4]
 gi|228652304|gb|EEL08229.1| DNA integrity scanning protein disA [Bacillus cereus BDRD-ST196]
 gi|228721348|gb|EEL72869.1| DNA integrity scanning protein disA [Bacillus cereus AH603]
 gi|228751615|gb|EEM01415.1| DNA integrity scanning protein disA [Bacillus mycoides DSM 2048]
          Length = 357

 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/184 (9%), Positives = 50/184 (27%), Gaps = 15/184 (8%)

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           + +      +   +         +    +    +  ++         +  Q  +     E
Sbjct: 172 TNLGILEFEEVVTMSEVVHVLHSVEMVLRIKNEIVSYIHELGTEGRLIRLQLTELLADLE 231

Query: 499 -DPAFSIRIPADIFTLQRRQQ----TSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            + A  I+      T    Q           + +     V +      ++   +++   +
Sbjct: 232 AEAALLIKDYYQEKTQDHHQILKKLQDLANTQLLEDSDLVKLLGYPGQMSLEESVTPRGY 291

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
             +  I  V   I  +L   + + Q   +               L  V  +G++ A+ I 
Sbjct: 292 RIASKISRVPPLIIENLINRFKTLQGVCRAT----------INELDDVEGIGEVRAKKIR 341

Query: 614 EFYQ 617
           E  +
Sbjct: 342 EGLK 345


>gi|292492317|ref|YP_003527756.1| ERCC4 domain protein [Nitrosococcus halophilus Nc4]
 gi|291580912|gb|ADE15369.1| ERCC4 domain protein [Nitrosococcus halophilus Nc4]
          Length = 236

 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 10/68 (14%)

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
           +     +     G+  +G E AR L  ++ S +                   L+ VP +G
Sbjct: 161 KGKRRTQLTLLQGLPGIGPERARQLLAHFGSVEAVLNAH----------LEELMTVPGIG 210

Query: 606 DIIAQAIV 613
             +A+ I 
Sbjct: 211 KEVARGIR 218


>gi|284166895|ref|YP_003405174.1| excinuclease ABC subunit C [Haloterrigena turkmenica DSM 5511]
 gi|284016550|gb|ADB62501.1| excinuclease ABC, C subunit [Haloterrigena turkmenica DSM 5511]
          Length = 597

 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 10/74 (13%)

Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600
           ++   + +  E       +  VG E  + L   + S +N  +               +  
Sbjct: 532 AVQYHQTVRDEVKTVLDDVPGVGPETRKRLLGRFGSVENVREA----------SVDDIES 581

Query: 601 VPLVGDIIAQAIVE 614
           V  +G+  A+ I  
Sbjct: 582 VEGIGEKTAETIKS 595


>gi|288930501|ref|YP_003434561.1| ERCC4 domain protein [Ferroglobus placidus DSM 10642]
 gi|288892749|gb|ADC64286.1| ERCC4 domain protein [Ferroglobus placidus DSM 10642]
          Length = 213

 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586
           +                + +     +      I  +G E A+ L + + + Q  A     
Sbjct: 128 LKYIDSKIRKGELRVFPRVKAKEDYQIAMLTAIPGIGEERAKRLLEKFGNLQRIANA--- 184

Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                      L+RV  +G+  A+ I + ++
Sbjct: 185 -------SLYELMRVEGIGEKYARRIYDAFR 208


>gi|289578945|ref|YP_003477572.1| excinuclease ABC, C subunit [Thermoanaerobacter italicus Ab9]
 gi|289528658|gb|ADD03010.1| excinuclease ABC, C subunit [Thermoanaerobacter italicus Ab9]
          Length = 615

 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ--N 618
            +  +  R +A+       FA   +            L+ +P +G+  A+A+ + +    
Sbjct: 527 PMTTKAFRLIAQIQEEAHRFAITFHKEKQSKRFK-SELLNIPGIGEKRAKALYDAFNSIE 585

Query: 619 PRNICAVEALLK 630
                +VE L K
Sbjct: 586 EIKRASVEDLKK 597



 Score = 37.5 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 10/62 (16%)

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            L I  +G + A++L   + S +   +               L +V  + +  AQA+ E+
Sbjct: 563 LLNIPGIGEKRAKALYDAFNSIEEIKRA----------SVEDLKKVEGMNEKAAQAVYEY 612

Query: 616 YQ 617
           ++
Sbjct: 613 FR 614


>gi|256545267|ref|ZP_05472632.1| UvrABC system, C protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399094|gb|EEU12706.1| UvrABC system, C protein [Anaerococcus vaginalis ATCC 51170]
          Length = 615

 Score = 37.9 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 40/122 (32%), Gaps = 15/122 (12%)

Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555
             +    +I    +   +++R        E        ++      + +    S    I 
Sbjct: 506 DDKHTTRAIIYENEEIQIKKRDPVYKLIYEIQEEAHRFAINYHRKLMTQTMKKSELDNIN 565

Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615
            +G          +L K++ S +N  +               L+ V L+G+  A  I+++
Sbjct: 566 GIG-----KRKKENLLKHFKSVKNIKKA----------SLEELMEVDLIGESQALEIIKY 610

Query: 616 YQ 617
           ++
Sbjct: 611 FK 612


>gi|164686654|ref|ZP_02210682.1| hypothetical protein CLOBAR_00249 [Clostridium bartlettii DSM
           16795]
 gi|164604044|gb|EDQ97509.1| hypothetical protein CLOBAR_00249 [Clostridium bartlettii DSM
           16795]
          Length = 604

 Score = 37.9 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 7/63 (11%), Positives = 24/63 (38%), Gaps = 10/63 (15%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +G +  ++L  ++ + ++               +  L+ V  +    A+ I  +++
Sbjct: 552 DIPGIGEKRKKNLLSHFKNIESIKAAT----------FEQLLEVESINKTAAENIYNYFK 601

Query: 618 NPR 620
           +  
Sbjct: 602 SEE 604


>gi|119473243|ref|ZP_01614920.1| hypothetical protein ATW7_09838 [Alteromonadales bacterium TW-7]
 gi|119444537|gb|EAW25854.1| hypothetical protein ATW7_09838 [Alteromonadales bacterium TW-7]
          Length = 98

 Score = 37.9 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
                ++ N+ D   L ++P +G   AQAIV +        ++E L K          K 
Sbjct: 33  AQIEAVSINSADAKMLAKLPGIGKKKAQAIVNYRDENGVFTSLEDLAKVKGIG-----KK 87

Query: 643 VSSEIENK 650
           V S++E K
Sbjct: 88  VMSKLEGK 95


>gi|257884754|ref|ZP_05664407.1| competence protein ComEA [Enterococcus faecium 1,231,501]
 gi|257820592|gb|EEV47740.1| competence protein ComEA [Enterococcus faecium 1,231,501]
          Length = 225

 Score = 37.9 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           I  N      L ++P +G + AQ I+ F +   +   VE L +         EK      
Sbjct: 164 ININTATPSELQQIPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKTVEKL----- 218

Query: 648 ENKKLV 653
             K  V
Sbjct: 219 --KNFV 222


>gi|165932718|ref|YP_001649507.1| channel protein [Rickettsia rickettsii str. Iowa]
 gi|165907805|gb|ABY72101.1| channel protein [Rickettsia rickettsii str. Iowa]
          Length = 1153

 Score = 37.9 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 25/292 (8%), Positives = 75/292 (25%), Gaps = 23/292 (7%)

Query: 373  LHNEDYIKGLDASGKVMRGGRDIRVGDRVLV----KRAGEVIPKVVDIIVNERHPDAQPF 428
            L +   I+    + + ++  + + +G+++       + G +   V   + +    +    
Sbjct: 832  LRSWQEIEHRVDTKRKLKEEKRVGIGEKIYAGYTGIKRGALTAIVGKDLRDAYEGNLTSA 891

Query: 429  SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             +  F              K  +    H              +           +E  G+
Sbjct: 892  EWHDFEYNDPRLRTYSEKLKDDEKAREHEELQMHINKEALAAQADILSPEYLARLEKAGR 951

Query: 489  QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL-YDSINKRRN 547
                 +++       I         +        +              +          
Sbjct: 952  HSDVEYYQELAQRKLIHEVHGRLFEEGEPVMMGDRFMREKATDSQMRDMIDNAHRKHAEF 1011

Query: 548  ISLERFIFSLGIRHVGAEIA--------RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            I  +R+I       +  E A        + L  ++       +E+  +IA    D     
Sbjct: 1012 IDGDRYIRRQEHYDIMYEKAQENLEQTYKELKDHFKRDDIKIEEMPALIAQKVKDTAEEA 1071

Query: 600  RVPLVGDIIAQAIVEFYQNPRN-------ICAVEALLKEVSPSIGRHEKNVS 644
             +      I + +  F  + +N       +  +E   + ++  +      ++
Sbjct: 1072 EIDQ---KITEELNNFNADVKNYEYSTEVLNKIEDRKQAITDEVNAQIDKIN 1120


>gi|16800587|ref|NP_470855.1| hypothetical protein lin1519 [Listeria innocua Clip11262]
 gi|16413992|emb|CAC96750.1| comEA [Listeria innocua Clip11262]
          Length = 200

 Score = 37.9 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
            + +  +  N+   + L +VP +GD  A AI+E+ +       +E L           EK
Sbjct: 133 SDTDKKVNINSATKIDLQQVPGIGDSKATAIIEYREKEGLFQTIEDLKNVTGIGEKTVEK 192


>gi|327262389|ref|XP_003216007.1| PREDICTED: cysteine-rich motor neuron 1 protein-like [Anolis
           carolinensis]
          Length = 1050

 Score = 37.9 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 36/436 (8%), Positives = 81/436 (18%), Gaps = 43/436 (9%)

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----------SLNIPEIIEVRGE--- 190
           E G       RGDG  G+            P  +             +      R +   
Sbjct: 318 EAGYIPQIVSRGDGTPGKCCDVFECVNEAKPACIFNSVEYYDGDMFRMDACRFCRCQGGV 377

Query: 191 --VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248
              + ++   L  +   +  G        + +       NP           HG     +
Sbjct: 378 SICFSAQCGELHCDRYYVPEGECCPVCEDSISP----VSNPAGCYANSQIQAHGDRWRED 433

Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP--YDIDGLVYKV 306
                Q    +          + +              E   I    P  Y +       
Sbjct: 434 DCTFCQCINGESHCVATACGQSCLNPVKVPGECCPMCEEPTYITIGPPTCYPLMNCTLTE 493

Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRL---LDIDIQIGRTGILTPVARLEPVNI 363
            +     ++ +         S +       +          Q           R  P   
Sbjct: 494 MDCVYNFRVDQNGCRICQCKSREELCNDLMSDCSLDCAFGFQTDAHNCKICQCRPRPKKC 553

Query: 364 ----GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419
                        L N+   +             ++  G    +    +    ++   + 
Sbjct: 554 KSVACDKDCPYGYLKNKHGCEICRCKKCP-----ELSCGKTCPMGFQKDDQGCLICRCIE 608

Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479
                  P    S   +   R   + +   G             C   +        S  
Sbjct: 609 LPASIIPPAKAGSCLSVDGHRHENEESWHDG--------CRECYCLNGREMCALITCSVP 660

Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539
                 +   Q        D +   +      T+            +       +    +
Sbjct: 661 NCGNPTIHPGQCCP--SCPDESIVEKPELSGPTICYVPGGDYFVEGDTWNIDSCTQCTCH 718

Query: 540 DSINKRRNISLERFIF 555
           ++            + 
Sbjct: 719 NARVLCETEVCPPLLC 734


>gi|293596227|ref|ZP_05229458.2| comE operon protein [Listeria monocytogenes FSL J1-194]
 gi|293593694|gb|EFG01455.1| comE operon protein [Listeria monocytogenes FSL J1-194]
          Length = 211

 Score = 37.9 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
           I  N+     L +VP +G+  A AI+E+ +       +E L           EK
Sbjct: 150 INLNSATKDDLQQVPGIGESKATAIIEYREKEGLFQTIEDLKNVSGIGEKTVEK 203


>gi|15892069|ref|NP_359783.1| hypothetical protein RC0146 [Rickettsia conorii str. Malish 7]
 gi|81528528|sp|Q92JC1|Y146_RICCN RecName: Full=Uncharacterized lipoprotein RC0146; Flags: Precursor
 gi|15619190|gb|AAL02684.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 1153

 Score = 37.9 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 26/292 (8%), Positives = 75/292 (25%), Gaps = 23/292 (7%)

Query: 373  LHNEDYIKGLDASGKVMRGGRDIRVGDRVLV----KRAGEVIPKVVDIIVNERHPDAQPF 428
            L +   IK    + + ++  + + +G+++       + G +   V   + +    +    
Sbjct: 832  LRSWQEIKHRVDTKRKLKEEKRVGIGEKIYAGYTGIKRGVLTAIVGKDLRDAYEGNLTSA 891

Query: 429  SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             +  F              K  +    H              +           +E  G+
Sbjct: 892  EWHDFEYNDPRLRTYSEKLKDDEKAREHEELQMHINKEALAAQADILSPEYLARLEKAGR 951

Query: 489  QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL-YDSINKRRN 547
                 +++       I         +        +              +          
Sbjct: 952  HSDVEYYQELAQRKLIHEVHGRLFEEGEPVMMGDRFMREKATDSQMRDMIDNAHRKHAEF 1011

Query: 548  ISLERFIFSLGIRHVGAEIA--------RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            I  +R+I       +  E A        + L  ++       +E+  +IA    D     
Sbjct: 1012 IDGDRYIRRQEHYDIMHEKAQENLEQTYKELKDHFKRDDIKIEEMPALIAQKVKDTAEGA 1071

Query: 600  RVPLVGDIIAQAIVEFYQNPRN-------ICAVEALLKEVSPSIGRHEKNVS 644
             +      I + +  F  + +N       +  +E   + ++  +      ++
Sbjct: 1072 EIDQ---KITEELNNFNADVKNYEYSTEVLNKIEDRKQAITDEVNAQIDKIN 1120


>gi|299137105|ref|ZP_07030288.1| excinuclease ABC, C subunit [Acidobacterium sp. MP5ACTX8]
 gi|298601620|gb|EFI57775.1| excinuclease ABC, C subunit [Acidobacterium sp. MP5ACTX8]
          Length = 699

 Score = 37.9 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 74/248 (29%), Gaps = 15/248 (6%)

Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
           +  + L  +  +      I   D   ++ A  V   VV      +  D + F   +   +
Sbjct: 455 NMQEALQEALTLAEPPERIECFDISHIQGAETVASMVVWEKGVMKKADYRKFQVKTVTGV 514

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
                +R++  +  K +  ++                H  ++    I    +        
Sbjct: 515 DDFASMREIIHRRYKRLNENKEPLPSLILIDGGLGQLHAAAQALTEIGLTTQPLAS--IA 572

Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556
             +    +    D   +  R+      I+ I           +    + R+ + E     
Sbjct: 573 KREEIIYVHGQEDDPVVLDRRSPVLHVIQKIRDESHRFAVTYHRKRRQMRDRTSE----L 628

Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616
             I  VG    + L +++ S +   Q           +  +L+ V  V    A+ I +F+
Sbjct: 629 DDIPGVGTITRQRLLEHFGSVRALKQAAEK-------NPDALLSV--VNKATAEKIRQFF 679

Query: 617 QNPRNICA 624
              R + A
Sbjct: 680 TEERELEA 687


>gi|227503085|ref|ZP_03933134.1| possible competence protein EA [Corynebacterium accolens ATCC
           49725]
 gi|227076146|gb|EEI14109.1| possible competence protein EA [Corynebacterium accolens ATCC
           49725]
          Length = 225

 Score = 37.9 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
           N+     L  +  VG++ A+AIV F +       VE LL+       +  K   
Sbjct: 168 NSATAAELTDLSGVGEVTAEAIVSFREERGGFKDVEELLEVSGIGPAKFAKLKD 221


>gi|83767703|dbj|BAE57842.1| unnamed protein product [Aspergillus oryzae]
          Length = 820

 Score = 37.9 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 10/113 (8%)

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKT 685
           LK V        +     +    LVF+G L             +    GAV+S  ++ KT
Sbjct: 495 LKLVPDIKDIMPQIKRQILGGVILVFSGVLPLGTDTQNADISLWAKSFGAVISQKINVKT 554

Query: 686 DIIIVGDNPGSKLEKAQQL-GVKIMNEEQFL------FLLQQYNTTLRIHDDD 731
             ++ G N  +K+ +A +   VKI+  +  L        L +    L +H DD
Sbjct: 555 THLVAGRNRTAKVREATRYTNVKIVTTQWLLDCLTQWKWLDEEPYLLPVHPDD 607


>gi|46907712|ref|YP_014101.1| DNA-binding protein ComEA [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47094098|ref|ZP_00231823.1| comE operon protein 1 [Listeria monocytogenes str. 4b H7858]
 gi|258611690|ref|ZP_05241456.2| comE operon protein [Listeria monocytogenes FSL R2-503]
 gi|293596847|ref|ZP_05264778.2| comE operon protein [Listeria monocytogenes HPB2262]
 gi|300764851|ref|ZP_07074841.1| hypothetical protein LMHG_12882 [Listeria monocytogenes FSL N1-017]
 gi|11991257|gb|AAG42266.1|AF320589_1 competence protein 1 [Listeria monocytogenes]
 gi|46880981|gb|AAT04278.1| DNA-binding protein, ComEA family [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47017528|gb|EAL08336.1| comE operon protein 1 [Listeria monocytogenes str. 4b H7858]
 gi|258605410|gb|EEW18018.1| comE operon protein [Listeria monocytogenes FSL R2-503]
 gi|293582969|gb|EFF95001.1| comE operon protein [Listeria monocytogenes HPB2262]
 gi|300514527|gb|EFK41584.1| hypothetical protein LMHG_12882 [Listeria monocytogenes FSL N1-017]
          Length = 211

 Score = 37.9 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
           I  N+     L +VP +G+  A AI+E+ +       +E L           EK
Sbjct: 150 INLNSATKDDLQQVPGIGESKATAIIEYREKEGLFQTIEDLKNVSGIGEKTVEK 203


>gi|293552878|ref|ZP_06673536.1| competence protein comEA [Enterococcus faecium E1039]
 gi|291603012|gb|EFF33206.1| competence protein comEA [Enterococcus faecium E1039]
          Length = 238

 Score = 37.9 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           I  N      L ++P +G + AQ I+ F +   +   VE L +         EK      
Sbjct: 177 ININTATPSELQQIPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKTVEKL----- 231

Query: 648 ENKKLV 653
             K  V
Sbjct: 232 --KNFV 235


>gi|266621145|ref|ZP_06114080.1| excinuclease ABC subunit C [Clostridium hathewayi DSM 13479]
 gi|288867215|gb|EFC99513.1| excinuclease ABC subunit C [Clostridium hathewayi DSM 13479]
          Length = 625

 Score = 37.9 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +G    ++L +Y+   +   +              +L   P +    AQ++ +F+ 
Sbjct: 576 DIPDIGPTRRKALMRYFKDIEAIKEAT----------IEALTAAPGMNAKSAQSVYDFFH 625


>gi|153810942|ref|ZP_01963610.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174]
 gi|149832830|gb|EDM87913.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174]
          Length = 1439

 Score = 37.9 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 22/250 (8%), Positives = 65/250 (26%), Gaps = 34/250 (13%)

Query: 420  ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER----LKHF 475
                D   +          +  + +   K   L      T       +        +K+ 
Sbjct: 1201 CTRDDIMIYLISMGVESSLAFTIMEAVRKGKGLREEWEATMREHNVPEWYIWSCKKIKYM 1260

Query: 476  VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE---NILGFGD 532
              +       +   ++ +F   +  A+     +   T    +     +      +     
Sbjct: 1261 FPKAHAAAYVMMAWRIAWFKVFKPLAYYAAFFSIRATAFSYETMCMGRDRLDFYLAELRK 1320

Query: 533  VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ-NFAQEINNIIAHN 591
                      +  +++ + + +++ G+  +  ++ R+ A  +                  
Sbjct: 1321 KGDAASKKEQDTIKDMRIVQEMYARGLEFMPIDLYRAKANRFQIIDGKLMPA-------- 1372

Query: 592  NDDWLSLIRVPLVGDIIAQAIVE------FYQNPRNI------CAVEALLKEVSPSIGRH 639
                  L  +  +GD  A+A+V+      F               V  L+ ++       
Sbjct: 1373 ------LNCIDGMGDKAAEAVVDAAKQGKFLSKDDFRDRTKVSKTVIDLMDDLGIFGDIP 1426

Query: 640  EKNVSSEIEN 649
            + N  S  + 
Sbjct: 1427 QSNQFSLFDG 1436


>gi|119629544|gb|EAX09139.1| hCG1811463, isoform CRA_b [Homo sapiens]
          Length = 253

 Score = 37.9 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 5/45 (11%)

Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQR--HKAQEYVTQLGAV 676
           P+           + N K++   TL K+ R   + +  + +LG  
Sbjct: 10  PAAMNASAPADKPLSNMKIL---TLGKLSRNKDEVKATIEKLGGK 51


>gi|317144011|ref|XP_001819844.2| RNA polymerase II subunit A C-terminal domain phosphatase
           [Aspergillus oryzae RIB40]
          Length = 799

 Score = 37.9 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 10/113 (8%)

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKT 685
           LK V        +     +    LVF+G L             +    GAV+S  ++ KT
Sbjct: 474 LKLVPDIKDIMPQIKRQILGGVILVFSGVLPLGTDTQNADISLWAKSFGAVISQKINVKT 533

Query: 686 DIIIVGDNPGSKLEKAQQL-GVKIMNEEQFL------FLLQQYNTTLRIHDDD 731
             ++ G N  +K+ +A +   VKI+  +  L        L +    L +H DD
Sbjct: 534 THLVAGRNRTAKVREATRYTNVKIVTTQWLLDCLTQWKWLDEEPYLLPVHPDD 586


>gi|257878122|ref|ZP_05657775.1| competence protein ComEA [Enterococcus faecium 1,230,933]
 gi|257881092|ref|ZP_05660745.1| competence protein ComEA [Enterococcus faecium 1,231,502]
 gi|257889678|ref|ZP_05669331.1| competence protein ComEA [Enterococcus faecium 1,231,410]
 gi|257892384|ref|ZP_05672037.1| competence protein ComEA [Enterococcus faecium 1,231,408]
 gi|260559171|ref|ZP_05831357.1| competence protein ComEA [Enterococcus faecium C68]
 gi|257812350|gb|EEV41108.1| competence protein ComEA [Enterococcus faecium 1,230,933]
 gi|257816750|gb|EEV44078.1| competence protein ComEA [Enterococcus faecium 1,231,502]
 gi|257826038|gb|EEV52664.1| competence protein ComEA [Enterococcus faecium 1,231,410]
 gi|257828763|gb|EEV55370.1| competence protein ComEA [Enterococcus faecium 1,231,408]
 gi|260074928|gb|EEW63244.1| competence protein ComEA [Enterococcus faecium C68]
          Length = 225

 Score = 37.9 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           I  N      L ++P +G + AQ I+ F +   +   VE L +         EK      
Sbjct: 164 ININTATPSELQQIPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKTVEKL----- 218

Query: 648 ENKKLV 653
             K  V
Sbjct: 219 --KNFV 222


>gi|229015486|ref|ZP_04172484.1| DNA integrity scanning protein disA [Bacillus cereus AH1273]
 gi|229021695|ref|ZP_04178277.1| DNA integrity scanning protein disA [Bacillus cereus AH1272]
 gi|228739563|gb|EEL89977.1| DNA integrity scanning protein disA [Bacillus cereus AH1272]
 gi|228745773|gb|EEL95777.1| DNA integrity scanning protein disA [Bacillus cereus AH1273]
          Length = 357

 Score = 37.9 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 18/184 (9%), Positives = 50/184 (27%), Gaps = 15/184 (8%)

Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498
           + +      +   +         +    +    +  ++         +  Q  +     E
Sbjct: 172 TNLGILEFEEVVTMSEVVHVLHSVEMVLRIKNEILSYIHELGTEGRLIRLQLTELLADLE 231

Query: 499 -DPAFSIRIPADIFTLQRRQQ----TSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553
            + A  I+      T    Q           + +     V +      ++   +++   +
Sbjct: 232 AEAALLIKDYYQEKTQDHHQILKKLQDLANTQLLEDSDLVKLLGYPGQMSLEESVTPRGY 291

Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
             +  I  V   I  +L   + + Q   +               L  V  +G++ A+ I 
Sbjct: 292 RIASKISRVPPLIIENLINRFKTLQGVCRAT----------INELDDVEGIGEVRAKKIR 341

Query: 614 EFYQ 617
           E  +
Sbjct: 342 EGLK 345


>gi|226224085|ref|YP_002758192.1| integral membrane protein ComEA [Listeria monocytogenes Clip81459]
 gi|254992214|ref|ZP_05274404.1| ComEA family DNA-binding protein [Listeria monocytogenes FSL
           J2-064]
 gi|255520858|ref|ZP_05388095.1| ComEA family DNA-binding protein [Listeria monocytogenes FSL
           J1-175]
 gi|225876547|emb|CAS05256.1| Putative integral membrane protein ComEA [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328465525|gb|EGF36754.1| ComEA family DNA-binding protein [Listeria monocytogenes 1816]
 gi|332311926|gb|EGJ25021.1| DNA-binding protein, ComEA family [Listeria monocytogenes str.
           Scott A]
          Length = 200

 Score = 37.9 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
           I  N+     L +VP +G+  A AI+E+ +       +E L           EK
Sbjct: 139 INLNSATKDDLQQVPGIGESKATAIIEYREKEGLFQTIEDLKNVSGIGEKTVEK 192


>gi|127513417|ref|YP_001094614.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Shewanella loihica PV-4]
 gi|126638712|gb|ABO24355.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Shewanella loihica PV-4]
          Length = 99

 Score = 37.9 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL--LKEVSPSIGR 638
           AQ   + +  N      L ++  +G+  A AIVE+        ++E L  +K + P +  
Sbjct: 32  AQASLSQVNINTASAQELTQLKGIGEAKASAIVEYRDAHGKFNSIEELTQVKGIGPKVIE 91

Query: 639 HEKNV 643
             K +
Sbjct: 92  QNKAI 96


>gi|325198757|gb|ADY94213.1| hypothetical protein NMBG2136_1528 [Neisseria meningitidis G2136]
          Length = 154

 Score = 37.9 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 31/133 (23%), Gaps = 1/133 (0%)

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L   + +             +    L       R          L    +  +  + +  
Sbjct: 2   LYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFV 61

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
            +             +  N      L  +P +G   A+AI E+        +V+ L K  
Sbjct: 62  LF-CMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVK 120

Query: 633 SPSIGRHEKNVSS 645
                   K    
Sbjct: 121 GIGPAVLAKLKDQ 133


>gi|121635674|ref|YP_975919.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
 gi|120867380|emb|CAM11152.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
          Length = 154

 Score = 37.9 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 31/133 (23%), Gaps = 1/133 (0%)

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L   + +             +    L       R          L    +  +  + +  
Sbjct: 2   LYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFV 61

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
            +             +  N      L  +P +G   A+AI E+        +V+ L K  
Sbjct: 62  LF-CMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVK 120

Query: 633 SPSIGRHEKNVSS 645
                   K    
Sbjct: 121 GIGPAVLAKLKDQ 133


>gi|121635298|ref|YP_975543.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
 gi|121635568|ref|YP_975813.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
 gi|120867004|emb|CAM10767.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
 gi|120867274|emb|CAM11045.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
          Length = 154

 Score = 37.9 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 31/133 (23%), Gaps = 1/133 (0%)

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L   + +             +    L       R          L    +  +  + +  
Sbjct: 2   LYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFV 61

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
            +             +  N      L  +P +G   A+AI E+        +V+ L K  
Sbjct: 62  LF-CMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVK 120

Query: 633 SPSIGRHEKNVSS 645
                   K    
Sbjct: 121 GIGPAVLAKLKDQ 133


>gi|121633939|ref|YP_974184.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
 gi|120865645|emb|CAM09365.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
          Length = 154

 Score = 37.9 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 31/133 (23%), Gaps = 1/133 (0%)

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L   + +             +    L       R          L    +  +  + +  
Sbjct: 2   LYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFV 61

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
            +             +  N      L  +P +G   A+AI E+        +V+ L K  
Sbjct: 62  LF-CMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVK 120

Query: 633 SPSIGRHEKNVSS 645
                   K    
Sbjct: 121 GIGPAVLAKLKDQ 133


>gi|189424687|ref|YP_001951864.1| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Geobacter
           lovleyi SZ]
 gi|189420946|gb|ACD95344.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Geobacter lovleyi SZ]
          Length = 272

 Score = 37.9 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR----HKAQEYVTQLGA 675
           +  +  L KEV+  +   EK  + +++ K  V TG L K++R     +  + + + G 
Sbjct: 216 VEMMNRL-KEVAVPVKAAEKMTAEQLQGK--VLTGVLHKVERPEYCEEYAKVIERAGG 270


>gi|299771544|ref|YP_003733570.1| DNA uptake protein, related DNA-binding protein [Acinetobacter sp.
           DR1]
 gi|298701632|gb|ADI92197.1| DNA uptake protein, related DNA-binding protein [Acinetobacter sp.
           DR1]
          Length = 134

 Score = 37.9 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 24/63 (38%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
             + +  +  N  +   L ++  +G+  AQAIVE+ Q       ++             E
Sbjct: 67  MTDSSGQVHLNQANIDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFE 126

Query: 641 KNV 643
           KN 
Sbjct: 127 KNK 129


>gi|293569405|ref|ZP_06680702.1| putative competence protein comEA [Enterococcus faecium E1071]
 gi|291587931|gb|EFF19782.1| putative competence protein comEA [Enterococcus faecium E1071]
          Length = 238

 Score = 37.9 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           I  N      L ++P +G + AQ I+ F +   +   VE L +         EK      
Sbjct: 177 ININTATPSELQQIPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKTVEKL----- 231

Query: 648 ENKKLV 653
             K  V
Sbjct: 232 --KNFV 235


>gi|238486788|ref|XP_002374632.1| RNA Polymerase II CTD phosphatase Fcp1, putative [Aspergillus
           flavus NRRL3357]
 gi|220699511|gb|EED55850.1| RNA Polymerase II CTD phosphatase Fcp1, putative [Aspergillus
           flavus NRRL3357]
          Length = 698

 Score = 37.9 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 10/113 (8%)

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKT 685
           LK V        +     +    LVF+G L             +    GAV+S  ++ KT
Sbjct: 373 LKLVPDIKDIMPQIKRQILGGVILVFSGVLPLGTDTQNADISLWAKSFGAVISQKINVKT 432

Query: 686 DIIIVGDNPGSKLEKAQQL-GVKIMNEEQFL------FLLQQYNTTLRIHDDD 731
             ++ G N  +K+ +A +   VKI+  +  L        L +    L +H DD
Sbjct: 433 THLVAGRNRTAKVREATRYTNVKIVTTQWLLDCLTQWKWLDEEPYLLPVHPDD 485


>gi|163942083|ref|YP_001646967.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Bacillus weihenstephanensis KBAB4]
 gi|163864280|gb|ABY45339.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus weihenstephanensis KBAB4]
          Length = 199

 Score = 37.9 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 24/67 (35%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
             +    +  N      L ++  +G   A++I+++ +       +E LL+         E
Sbjct: 131 FSKSEGKVQINTASKEQLEKITGIGSRKAESILKYREERGPFQKIEDLLEIDGIGAKSLE 190

Query: 641 KNVSSEI 647
           K     I
Sbjct: 191 KIKDQII 197


>gi|262281000|ref|ZP_06058783.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257900|gb|EEY76635.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 134

 Score = 37.9 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 24/63 (38%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
             + +  +  N  +   L ++  +G+  AQAIVE+ Q       ++             E
Sbjct: 67  MTDSSGQVHLNQANIDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFE 126

Query: 641 KNV 643
           KN 
Sbjct: 127 KNK 129


>gi|18309334|ref|NP_561268.1| excinuclease ABC subunit C [Clostridium perfringens str. 13]
 gi|21363051|sp|Q8XNI1|UVRC_CLOPE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|18144010|dbj|BAB80058.1| excinuclease ABC subunit C [Clostridium perfringens str. 13]
          Length = 620

 Score = 37.9 bits (86), Expect = 7.1,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +G +  R+L   + S  N  +               L+  P +    A++I +++ 
Sbjct: 570 DIPRIGEKRRRNLLMKFGSIDNIKKA----------SMEELLDTPGIDKRAAESIKQYFS 619


>gi|261393343|emb|CAX50979.1| DNA-binding competence protein ComE4 [Neisseria meningitidis 8013]
          Length = 154

 Score = 37.9 bits (86), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 31/133 (23%), Gaps = 1/133 (0%)

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L   + +             +    L       R          L    +  +  + +  
Sbjct: 2   LCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFV 61

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
            +             +  N      L  +P +G   A+AI E+        +V+ L K  
Sbjct: 62  LF-CMLFSCTFSLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVK 120

Query: 633 SPSIGRHEKNVSS 645
                   K    
Sbjct: 121 GIGPAVLAKLKDQ 133


>gi|261391831|emb|CAX49288.1| DNA-binding competence protein ComE2 [Neisseria meningitidis 8013]
 gi|261392119|emb|CAX49616.1| DNA-binding competence protein ComE3 [Neisseria meningitidis 8013]
          Length = 154

 Score = 37.9 bits (86), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 31/133 (23%), Gaps = 1/133 (0%)

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L   + +             +    L       R          L    +  +  + +  
Sbjct: 2   LCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFV 61

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
            +             +  N      L  +P +G   A+AI E+        +V+ L K  
Sbjct: 62  LF-CMLFSCTFSLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVK 120

Query: 633 SPSIGRHEKNVSS 645
                   K    
Sbjct: 121 GIGPAVLAKLKDQ 133


>gi|261391604|emb|CAX49042.1| DNA-binding competence protein ComE1 [Neisseria meningitidis 8013]
          Length = 154

 Score = 37.9 bits (86), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 31/133 (23%), Gaps = 1/133 (0%)

Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572
           L   + +             +    L       R          L    +  +  + +  
Sbjct: 2   LCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFV 61

Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
            +             +  N      L  +P +G   A+AI E+        +V+ L K  
Sbjct: 62  LF-CMLFSCTFSLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVK 120

Query: 633 SPSIGRHEKNVSS 645
                   K    
Sbjct: 121 GIGPAVLAKLKDQ 133


>gi|289566282|ref|ZP_06446713.1| competence protein ComEA [Enterococcus faecium D344SRF]
 gi|294615865|ref|ZP_06695707.1| competence protein comEA [Enterococcus faecium E1636]
 gi|294617300|ref|ZP_06696941.1| putative competence protein ComEA [Enterococcus faecium E1679]
 gi|289161922|gb|EFD09791.1| competence protein ComEA [Enterococcus faecium D344SRF]
 gi|291591251|gb|EFF22918.1| competence protein comEA [Enterococcus faecium E1636]
 gi|291596457|gb|EFF27709.1| putative competence protein ComEA [Enterococcus faecium E1679]
          Length = 238

 Score = 37.9 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           I  N      L ++P +G + AQ I+ F +   +   VE L +         EK      
Sbjct: 177 ININTATPSELQQIPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKTVEKL----- 231

Query: 648 ENKKLV 653
             K  V
Sbjct: 232 --KNFV 235


>gi|325980945|ref|YP_004293347.1| HhH-GPD family protein [Nitrosomonas sp. AL212]
 gi|325530464|gb|ADZ25185.1| HhH-GPD family protein [Nitrosomonas sp. AL212]
          Length = 205

 Score = 37.9 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 37/130 (28%), Gaps = 2/130 (1%)

Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545
              Q +    +  + A  I       TL R        ++         +  + D     
Sbjct: 15  GCDQVMQQLIQQFENAALISRGCAFTTLARSIVGQQISVKAAESVWQKIIGAIPDIAPHT 74

Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605
                   + + G+        + L++++   +    E   +   +      L ++  +G
Sbjct: 75  ITAQEPDALRACGLSARKITYLQDLSRHF--MEGKLNETGWVGMDDETIIAQLSKIKGIG 132

Query: 606 DIIAQAIVEF 615
              A+  + F
Sbjct: 133 RWTAEMFLIF 142


>gi|82703340|ref|YP_412906.1| competence protein ComEA helix-hairpin-helix region [Nitrosospira
           multiformis ATCC 25196]
 gi|82411405|gb|ABB75514.1| Competence protein ComEA helix-hairpin-helix region [Nitrosospira
           multiformis ATCC 25196]
          Length = 100

 Score = 37.9 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 21/59 (35%)

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
                +  N      L  +  +G   A+AI+++ +   +  +V+ L           +K
Sbjct: 19  ATFAAVNINTASQAELESLQGIGPAKAKAIIDYRKKKGSFKSVDDLQNVSGIGPATVQK 77


>gi|157414332|ref|YP_001481588.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni 81116]
 gi|77386119|gb|ABA77536.1| putative non-specific DNA binding protein [Campylobacter jejuni]
 gi|157385296|gb|ABV51611.1| putative non-specific DNA binding protein [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|315931296|gb|EFV10265.1| comE1 [Campylobacter jejuni subsp. jejuni 327]
          Length = 79

 Score = 37.9 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638
                +   +  N      L  +  +G+  A++I+E+ +   N  +++ L K        
Sbjct: 10  ALTAFLFGAVNINTATLKELKSLNGIGEAKAKSILEY-RKEANFTSIDDLKKVKGIGDKL 68

Query: 639 HEKNVS 644
            EK  +
Sbjct: 69  FEKIKN 74


>gi|182624542|ref|ZP_02952325.1| excinuclease ABC, C subunit [Clostridium perfringens D str.
           JGS1721]
 gi|177910350|gb|EDT72731.1| excinuclease ABC, C subunit [Clostridium perfringens D str.
           JGS1721]
          Length = 620

 Score = 37.9 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +G +  R+L   + S  N  +               L+  P +    A++I +++ 
Sbjct: 570 DIPRIGEKRRRNLLMKFGSIDNIKKA----------SMEELLDTPGIDKRAAESIKQYFS 619


>gi|168212741|ref|ZP_02638366.1| excinuclease ABC, C subunit [Clostridium perfringens CPE str.
           F4969]
 gi|170715691|gb|EDT27873.1| excinuclease ABC, C subunit [Clostridium perfringens CPE str.
           F4969]
          Length = 620

 Score = 37.9 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +G +  R+L   + S  N  +               L+  P +    A++I +++ 
Sbjct: 570 DIPRIGEKRRRNLLMKFGSIDNIKKA----------SMEELLDTPGIDKRAAESIKQYFS 619


>gi|320352496|ref|YP_004193835.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Desulfobulbus propionicus DSM 2032]
 gi|320120998|gb|ADW16544.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Desulfobulbus propionicus DSM 2032]
          Length = 84

 Score = 37.9 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 22/62 (35%)

Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639
           FA      +  N  +   L  +  +G   A+AIV +     N   VE L K         
Sbjct: 14  FATAAFAKVNINTANAEELATLNGIGKTKAEAIVAYRTANGNFKTVEDLNKVNGIGDKII 73

Query: 640 EK 641
           EK
Sbjct: 74  EK 75


>gi|168216567|ref|ZP_02642192.1| excinuclease ABC, C subunit [Clostridium perfringens NCTC 8239]
 gi|182381551|gb|EDT79030.1| excinuclease ABC, C subunit [Clostridium perfringens NCTC 8239]
          Length = 620

 Score = 37.9 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +G +  R+L   + S  N  +               L+  P +    A++I +++ 
Sbjct: 570 DIPRIGEKRRRNLLMKFGSIDNIKKA----------SMEELLDTPGIDKRAAESIKQYFS 619


>gi|168204466|ref|ZP_02630471.1| excinuclease ABC, C subunit [Clostridium perfringens E str.
           JGS1987]
 gi|170664072|gb|EDT16755.1| excinuclease ABC, C subunit [Clostridium perfringens E str.
           JGS1987]
          Length = 620

 Score = 37.9 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +G +  R+L   + S  N  +               L+  P +    A++I +++ 
Sbjct: 570 DIPRIGEKRRRNLLMKFGSIDNIKKA----------SMEELLDTPGIDKRAAESIKQYFS 619


>gi|169344093|ref|ZP_02865079.1| excinuclease ABC, C subunit [Clostridium perfringens C str.
           JGS1495]
 gi|169297828|gb|EDS79925.1| excinuclease ABC, C subunit [Clostridium perfringens C str.
           JGS1495]
          Length = 620

 Score = 37.9 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +G +  R+L   + S  N  +               L+  P +    A++I +++ 
Sbjct: 570 DIPRIGEKRRRNLLMKFGSIDNIKKA----------SMEELLDTPGIDKRAAESIKQYFS 619


>gi|110802431|ref|YP_697662.1| excinuclease ABC subunit C [Clostridium perfringens SM101]
 gi|119367644|sp|Q0SW38|UVRC_CLOPS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|110682932|gb|ABG86302.1| excinuclease ABC, C subunit [Clostridium perfringens SM101]
          Length = 620

 Score = 37.9 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +G +  R+L   + S  N  +               L+  P +    A++I +++ 
Sbjct: 570 DIPRIGEKRRRNLLMKFGSIDNIKKA----------SMEELLDTPGIDKRAAESIKQYFS 619


>gi|110800325|ref|YP_694801.1| excinuclease ABC subunit C [Clostridium perfringens ATCC 13124]
 gi|168210457|ref|ZP_02636082.1| excinuclease ABC, C subunit [Clostridium perfringens B str. ATCC
           3626]
 gi|119367643|sp|Q0TU89|UVRC_CLOP1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|110674972|gb|ABG83959.1| excinuclease ABC, C subunit [Clostridium perfringens ATCC 13124]
 gi|170711527|gb|EDT23709.1| excinuclease ABC, C subunit [Clostridium perfringens B str. ATCC
           3626]
          Length = 620

 Score = 37.9 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +G +  R+L   + S  N  +               L+  P +    A++I +++ 
Sbjct: 570 DIPRIGEKRRRNLLMKFGSIDNIKKA----------SMEELLDTPGIDKRAAESIKQYFS 619


>gi|313623714|gb|EFR93861.1| ComEA family DNA-binding protein [Listeria innocua FSL J1-023]
          Length = 200

 Score = 37.9 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%)

Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
            E +  +  N+   + L +VP +GD  A AI+E+ +       +E L           EK
Sbjct: 133 SETDKKVNINSATKVDLQQVPGIGDSKATAIIEYREKEGLFQTIEDLKNVTGIGEKTVEK 192


>gi|187778441|ref|ZP_02994914.1| hypothetical protein CLOSPO_02035 [Clostridium sporogenes ATCC
           15579]
 gi|187772066|gb|EDU35868.1| hypothetical protein CLOSPO_02035 [Clostridium sporogenes ATCC
           15579]
          Length = 202

 Score = 37.9 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 19/60 (31%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              +  N      L  +  +GD+ AQ I+++ +        E L           EK   
Sbjct: 138 EGKVDLNTASKEELKTISGIGDVTAQKILDYREKQGTFKNFEDLKAIGRIGDKTIEKIKE 197


>gi|145491979|ref|XP_001431988.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399095|emb|CAK64590.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1650

 Score = 37.5 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 26/362 (7%), Positives = 70/362 (19%), Gaps = 22/362 (6%)

Query: 135  DGTMITIRYEKGK--------------FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180
            DG      Y+ G+                      DGH  E     +  +       + N
Sbjct: 962  DGCADGYFYKDGQCLECKSPCRTCRDSETQCLSCKDGHYYEISFGNVDIVNCYKCTTTEN 1021

Query: 181  IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240
                          K        ++I   +          +    +    +  + L    
Sbjct: 1022 CKSCENPDHSC---KTCVNEYIFQLIQATQICILCKD--CTCPKGQYYDWEQLKCLWCNP 1076

Query: 241  HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300
            +      +     +    Q +        N V               ++   S       
Sbjct: 1077 NCKSCDEQSDICTECAANQYLDKHRHRCFNCVSPCKQCSDFDKCLTCIEGQASPNGICQ- 1135

Query: 301  GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360
                ++D                + I+     +  ST  L+ + +      ++       
Sbjct: 1136 --TCQLDNCIKCLNNQCSQCQAGYFINQNQLCEPCSTNCLECNSKDSCQKCVSTTQVYLS 1193

Query: 361  VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420
              I  +        N+   +       +          +  +   + +     V    + 
Sbjct: 1194 SGICKSCNQPCQACNQSGCQSCPLGTYIENHDCKRCQDNCNMCSSSSDCQSCNVSYYFDG 1253

Query: 421  RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480
               ++    + +      S+     +          +      C                
Sbjct: 1254 ITCNSCSTKWENCQQCTDSQCNICQDKYYLDQNGNCQLCQNQYCQFNCNFETCQTCGEGC 1313

Query: 481  FN 482
              
Sbjct: 1314 IR 1315


>gi|196011639|ref|XP_002115683.1| hypothetical protein TRIADDRAFT_59627 [Trichoplax adhaerens]
 gi|190581971|gb|EDV22046.1| hypothetical protein TRIADDRAFT_59627 [Trichoplax adhaerens]
          Length = 503

 Score = 37.5 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 4   RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSE----YDALKRRCDAIA 59
           +++I  E   IE  ++E+++L +++  + D   +    ++ ++E    +D L +    + 
Sbjct: 402 QEMIDAEKKLIENIKEEIATLTEQLKENSDAAVENGDEMLSEAEQQELHDRLSKENQELE 461

Query: 60  HAFPDLARS 68
               +L   
Sbjct: 462 LHLDELFTK 470


>gi|323466481|gb|ADX70168.1| Possible deoxyribonuclease [Lactobacillus helveticus H10]
          Length = 221

 Score = 37.5 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 46/138 (33%), Gaps = 4/138 (2%)

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
               +  L          +              T+   Q T+   ++  L     +   L
Sbjct: 6   KEITLNQLYDIMYYHLDPNGWWPGRSDWEVIWSTVL-IQNTNWKNVDKALKILYKATNFL 64

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW-LS 597
             +I K  +  L++ I S G     A+  +++A+Y+    NF  ++      N       
Sbjct: 65  PANILKMSDEELQQTIASAGSYTRKAQTLKNIAQYFK--DNFNYDLEVAQEQNKKKLRKE 122

Query: 598 LIRVPLVGDIIAQAIVEF 615
           ++ +  +G   A  I+ +
Sbjct: 123 ILTIKGIGPETADVILMY 140


>gi|161507569|ref|YP_001577523.1| hypothetical protein lhv_1200 [Lactobacillus helveticus DPC 4571]
 gi|160348558|gb|ABX27232.1| hypothetical protein lhv_1200 [Lactobacillus helveticus DPC 4571]
          Length = 217

 Score = 37.5 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 46/138 (33%), Gaps = 4/138 (2%)

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
               +  L          +              T+   Q T+   ++  L     +   L
Sbjct: 2   KEITLNQLYDIMYYHLDPNGWWPGRSDWEVIWSTVL-IQNTNWKNVDKALKILYKATNFL 60

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW-LS 597
             +I K  +  L++ I S G     A+  +++A+Y+    NF  ++      N       
Sbjct: 61  PANILKMSDEELQQTIASAGSYTRKAQTLKNIAQYFK--DNFNYDLEVAQEQNKKKLRKE 118

Query: 598 LIRVPLVGDIIAQAIVEF 615
           ++ +  +G   A  I+ +
Sbjct: 119 ILTIKGIGPETADVILMY 136


>gi|332534903|ref|ZP_08410723.1| competence protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035638|gb|EGI72128.1| competence protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 98

 Score = 37.5 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645
             I+ NN D   L ++P +G   AQAIV++ +      +V  L +          K + +
Sbjct: 36  EAISINNADAEMLAKLPGIGKKKAQAIVDYREENGEFKSVSDLSQVKGIG-----KKLLA 90

Query: 646 EIENK 650
           ++E K
Sbjct: 91  KLEGK 95


>gi|229013548|ref|ZP_04170681.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus mycoides DSM 2048]
 gi|229169075|ref|ZP_04296790.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus cereus AH621]
 gi|228614303|gb|EEK71413.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus cereus AH621]
 gi|228747708|gb|EEL97578.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus mycoides DSM 2048]
          Length = 199

 Score = 37.5 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 24/67 (35%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
             +    +  N      L ++  +G   A++I+++ +       +E LL+         E
Sbjct: 131 FSKSEGKVQINTASKEQLEKITGIGSRKAESILKYREEHGLFQKIEDLLEIDGIGAKSLE 190

Query: 641 KNVSSEI 647
           K     I
Sbjct: 191 KIKDQII 197


>gi|196039334|ref|ZP_03106640.1| comE operon protein 1 [Bacillus cereus NVH0597-99]
 gi|196029961|gb|EDX68562.1| comE operon protein 1 [Bacillus cereus NVH0597-99]
          Length = 198

 Score = 37.5 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 24/63 (38%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              +  N      L ++  +G   A++I+++ +       +E LL+     +   EK   
Sbjct: 134 EEKVQINAASKEQLEKITGIGSRKAESILKYREEHGPFQKIEDLLEIDGIGVKSLEKIKD 193

Query: 645 SEI 647
             I
Sbjct: 194 QII 196


>gi|126303160|ref|XP_001371652.1| PREDICTED: similar to Cysteine rich transmembrane BMP regulator 1
           (chordin like) [Monodelphis domestica]
          Length = 1041

 Score = 37.5 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 44/446 (9%), Positives = 85/446 (19%), Gaps = 46/446 (10%)

Query: 146 GKFVYAALRGDGHSG--EDVSACIRAIPTIPRVLSLNIPEIIEVRGE--VYISKNDFLAL 201
           G       RGDG  G   DV  C+          S+   +    R +   +      +++
Sbjct: 309 GSIPRIVSRGDGTPGKCCDVFECVNETKPACVFNSVEYYDGDMFRMDNCQFCRCQGGVSI 368

Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261
                                     +P                 +      + +     
Sbjct: 369 CFSAQCGELNCDRYYEPEGECCPVCEDPVYPFNNPAGCFASGQIRAHGDRWREDDCTFCQ 428

Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEM-----KSIRSTLPYDIDGLVYKVDEFSLQKQLG 316
              G P         +    V    E      +    T+     G +            G
Sbjct: 429 CINGEPHCVATACGQSCMNPVKVPGECCPVCEEPSYITVDPPACGALSNCTLTEKDCIYG 488

Query: 317 ERARSPRWMISHKFAEKQASTRLLD-----------IDIQIGRTGILTPVARLEPVNIGG 365
            +       I      ++  T LL             D Q        P  +     I  
Sbjct: 489 FKLDHNGCRICQCKNREEMCTSLLQGCTLDCPFGFQTDAQNCEICQCRPRPKKCKPVICD 548

Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRV------GDRVLVKRAGEVIP-------- 411
                  L N+                  I            L+ +  E  P        
Sbjct: 549 KYCPFGYLKNKHGCDICRCKKCPEHPCSKICPVGFQVDSHGCLICKCREATPSASIGPPV 608

Query: 412 ------------KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT 459
                          +   ++   +    +    C +    V    NP          C+
Sbjct: 609 QTGTCLSMDGRHHKNEESWHDGCRECYCHNGREMCALITCPVPTCNNPTIRPGQCCPSCS 668

Query: 460 GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT 519
                   +L       +             +D   +    +  +    ++      Q  
Sbjct: 669 DEFVVQKPELSSPSICHAPGGEYFVDGETWNIDSCTQCTCHSGRVLCETEVCPPLLCQTP 728

Query: 520 STTKIENILGFGDVSVTNLYDSINKR 545
           S T+        D  +     +    
Sbjct: 729 SRTQDSCCPQCTDEPLQPSSSNNESM 754


>gi|307207165|gb|EFN84955.1| Poly [ADP-ribose] polymerase [Harpegnathos saltator]
          Length = 983

 Score = 37.5 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688
            KE     G   +     ++N + V  G ++K  R + ++ +  LG  V   + +    +
Sbjct: 356 KKEEDKVDGPKVQGKPRPLKNMQFVILGRIEK-DREELKKDILLLGGTVGTKIHKDLAAV 414

Query: 689 IVG----DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724
           I      +    ++E  + L + ++ E  F+   ++Y   
Sbjct: 415 ISNPKEVEKMSKRMEDVKALDIHVITEN-FVEEAKEYTDA 453


>gi|260551952|ref|ZP_05825814.1| ComE1 [Acinetobacter sp. RUH2624]
 gi|260405355|gb|EEW98850.1| ComE1 [Acinetobacter sp. RUH2624]
          Length = 136

 Score = 37.5 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 4/132 (3%)

Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575
           R      K    +               +  + + + +     +      +++S +  Y 
Sbjct: 2   RYSMRLWKNNCFILMMLCLGVISPSVFAQSFDQNFQEWKAKQQMYDQKLNVSKS-SHSYG 60

Query: 576 SY---QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632
           S     N   +    I  N        ++  +G+  AQAIVE+ Q       ++ +    
Sbjct: 61  SKISQTNSLNDSTAQIHLNQATVNEFRQLKGIGEKKAQAIVEYRQKNGGFKNIDEIKNVK 120

Query: 633 SPSIGRHEKNVS 644
                  EKN S
Sbjct: 121 GIGPAIFEKNKS 132


>gi|260101529|ref|ZP_05751766.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|260084672|gb|EEW68792.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|328466413|gb|EGF37562.1| hypothetical protein AAULH_06821 [Lactobacillus helveticus MTCC
           5463]
          Length = 217

 Score = 37.5 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 46/138 (33%), Gaps = 4/138 (2%)

Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538
               +  L          +              T+   Q T+   ++  L     +   L
Sbjct: 2   KEITLNQLYDIMYYHLDPNGWWPGRSDWEVIWSTVL-IQNTNWKNVDKALKILYKATNFL 60

Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW-LS 597
             +I K  +  L++ I S G     A+  +++A+Y+    NF  ++      N       
Sbjct: 61  PANILKMSDEELQQTIASAGSYTRKAQTLKNIAQYFK--DNFNYDLEVAQEQNKKKLRKE 118

Query: 598 LIRVPLVGDIIAQAIVEF 615
           ++ +  +G   A  I+ +
Sbjct: 119 ILTIKGIGPETADVILMY 136


>gi|258616376|ref|ZP_05714146.1| competence protein comEA [Enterococcus faecium DO]
 gi|293563913|ref|ZP_06678336.1| competence protein comEA [Enterococcus faecium E1162]
 gi|294623504|ref|ZP_06702352.1| competence protein comEA [Enterococcus faecium U0317]
 gi|291597098|gb|EFF28301.1| competence protein comEA [Enterococcus faecium U0317]
 gi|291604146|gb|EFF33657.1| competence protein comEA [Enterococcus faecium E1162]
          Length = 238

 Score = 37.5 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           I  N      L ++P +G + AQ I+ F +   +   VE L +         EK      
Sbjct: 177 ININTATPSELQQIPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKTVEKL----- 231

Query: 648 ENKKLV 653
             K  V
Sbjct: 232 --KNFV 235


>gi|332672001|ref|YP_004455009.1| DNA integrity scanning, DisA, linker region [Cellulomonas fimi ATCC
           484]
 gi|332341039|gb|AEE47622.1| DNA integrity scanning, DisA, linker region [Cellulomonas fimi ATCC
           484]
          Length = 356

 Score = 37.5 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +  +   I   L  ++   Q                   L+ V  VG+  A+A+ E    
Sbjct: 296 VPRLPGTIVDRLVAHFGGLQKLLAAT----------IDDLMAVDGVGEQRARAVREGLSR 345

Query: 619 PRNICAVEA 627
                 +E 
Sbjct: 346 LAESSILER 354


>gi|260578287|ref|ZP_05846203.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
           43734]
 gi|258603589|gb|EEW16850.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
           43734]
          Length = 289

 Score = 37.5 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
           +  +  N  D   L  +  +G   A+AI+++ ++     +VE LL        + E 
Sbjct: 226 DAKVNLNTADATQLETISGIGPATAEAIIDWRESNGPFTSVEQLLDVRGIGPAKFEA 282


>gi|196044805|ref|ZP_03112039.1| comE operon protein 1 [Bacillus cereus 03BB108]
 gi|225866308|ref|YP_002751686.1| comE operon protein 1 [Bacillus cereus 03BB102]
 gi|196024293|gb|EDX62966.1| comE operon protein 1 [Bacillus cereus 03BB108]
 gi|225785871|gb|ACO26088.1| comE operon protein 1 [Bacillus cereus 03BB102]
          Length = 198

 Score = 37.5 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 24/63 (38%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              +  N      L ++  +G   A++I+++ +       +E LL+     +   EK   
Sbjct: 134 EEKVQINAASKEQLEKITGIGSRKAESILKYREEHGPFQKIEDLLEIDGIGVKSLEKIKD 193

Query: 645 SEI 647
             I
Sbjct: 194 QII 196


>gi|134298061|ref|YP_001111557.1| DNA integrity scanning protein DisA [Desulfotomaculum reducens
           MI-1]
 gi|134050761|gb|ABO48732.1| protein of unknown function DUF147 [Desulfotomaculum reducens MI-1]
          Length = 361

 Score = 37.5 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 18/176 (10%), Positives = 49/176 (27%), Gaps = 5/176 (2%)

Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499
            +      +   L    +    +    +  + +  ++S        +   Q++    + +
Sbjct: 173 ELSMMELQEVVTLFDVTKAIQRIEMVLRVKKEIDRYISELGTEGRLIA-MQMEELVANVE 231

Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559
               + I     TL  +   S  K   ++G            I +         +    +
Sbjct: 232 EEGLLIIQDYATTLGEKTPESILK---VIGSWPAEDLLDLVLIARALGYPGSASVLDQSV 288

Query: 560 RHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
              G    R + +      +N       +          L  V  +G++ A++I +
Sbjct: 289 SPRGYRALRKIPRLPLPVIENLVSTFQYLRTILAASIAELDEVEGIGEVRARSIKD 344


>gi|68535643|ref|YP_250348.1| hypothetical protein jk0571 [Corynebacterium jeikeium K411]
 gi|68263242|emb|CAI36730.1| hypothetical protein jk0571 [Corynebacterium jeikeium K411]
          Length = 294

 Score = 37.5 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
           +  +  N  D   L  +  +G   A+AI+++ ++     +VE LL        + E 
Sbjct: 231 DAKVNLNTADATQLETISGIGPATAEAIIDWRESNGPFTSVEQLLDVRGIGPAKFEA 287


>gi|300118680|ref|ZP_07056408.1| comE operon protein 1 [Bacillus cereus SJ1]
 gi|298723929|gb|EFI64643.1| comE operon protein 1 [Bacillus cereus SJ1]
          Length = 198

 Score = 37.5 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 24/63 (38%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              +  N      L ++  +G   A++I+++ +       +E LL+     +   EK   
Sbjct: 134 EEKVQINAASKEQLEKITGIGSRKAESILKYREEHGPFQKIEDLLEIDGIGVKSLEKIKD 193

Query: 645 SEI 647
             I
Sbjct: 194 QII 196


>gi|111219386|ref|XP_001134480.1| calmodulin-binding protein [Dictyostelium discoideum AX4]
 gi|152032641|sp|Q9U7C9|NUCMR_DICDI RecName: Full=Nucleomorphin; AltName: Full=Calmodulin-binding
           protein A; AltName: Full=Calmodulin-binding protein
           CaM-BP38
 gi|48994794|gb|AAT48090.1| nucleomorphin B [Dictyostelium discoideum]
 gi|60473969|gb|EAL71906.1| calmodulin-binding protein [Dictyostelium discoideum AX4]
          Length = 756

 Score = 37.5 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 17/94 (18%)

Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVF--TGTLQKIQRH-KAQEYVTQLGAVVSAILS 682
           E L            +  S+  EN   V   T     ++R  +  + + + G       +
Sbjct: 108 EDLSSSAEIHHDDSAQLNSNIFENLGFVIDIT---INLKRKMELVKIIKKNGGKSCYSCT 164

Query: 683 RKTD-------IIIVGDNPGSKLEKAQQLGVKIM 709
           + T         +   +    K+ +A  LG+ I+
Sbjct: 165 KATHLITTKQGYL---EKT-QKVTQAISLGIPIL 194


>gi|326529883|dbj|BAK08221.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score = 37.5 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 13/99 (13%)

Query: 623 CAVEALLK--EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA--QEYVTQLGAVVS 678
             +   LK  E      R     +       +  +G   ++ R  A  +E +   G  V+
Sbjct: 170 DFLNKWLKQQEGKGYPKRDVDEEAHIFSGMMVALSG---RMSRSHAYFKEQILNHGGQVN 226

Query: 679 AILSRKTDIIIVG----DNPGS-KLEKAQQLGVKIMNEE 712
             +      ++      D  GS    +A + G  +++E 
Sbjct: 227 NSVLG-VTCVVASPAERDKGGSGGFAEALERGTPVVSEN 264


>gi|222151487|ref|YP_002560643.1| hypothetical protein MCCL_1240 [Macrococcus caseolyticus JCSC5402]
 gi|222120612|dbj|BAH17947.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 220

 Score = 37.5 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 42/125 (33%)

Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575
                  ++ ++L   +V      D++N  + +     I+      V  +          
Sbjct: 88  YDAHQGERVHDVLKHAEVLPNADLDAVNLSQEVRDALVIYIPFKGEVKTDKYTLYQNAGG 147

Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635
              N    +   I  N  +   L  +P +G   AQ I+++  + +   A+E + +     
Sbjct: 148 YEGNSGSNVQKKININQAEQSELEEIPGIGPKKAQDIIKYRTDNKGFKAIEEIKEIRGVG 207

Query: 636 IGRHE 640
              +E
Sbjct: 208 DKIYE 212


>gi|52141176|ref|YP_085652.1| comE operon protein 1 [Bacillus cereus E33L]
 gi|229093397|ref|ZP_04224502.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus cereus Rock3-42]
 gi|51974645|gb|AAU16195.1| comE operon protein 1 [Bacillus cereus E33L]
 gi|228689991|gb|EEL43794.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus cereus Rock3-42]
          Length = 199

 Score = 37.5 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 24/63 (38%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              +  N      L ++  +G   A++I+++ +       +E LL+     +   EK   
Sbjct: 135 EEKVQINAASKEQLEKITGIGSRKAESILKYREEHGPFQKIEDLLEIDGIGVKSLEKIKD 194

Query: 645 SEI 647
             I
Sbjct: 195 QII 197


>gi|69247259|ref|ZP_00604277.1| Competence protein ComEA helix-hairpin-helix region [Enterococcus
           faecium DO]
 gi|314937551|ref|ZP_07844879.1| comEA protein [Enterococcus faecium TX0133a04]
 gi|314941458|ref|ZP_07848347.1| comEA protein [Enterococcus faecium TX0133C]
 gi|314949637|ref|ZP_07852958.1| comEA protein [Enterococcus faecium TX0082]
 gi|314951819|ref|ZP_07854857.1| comEA protein [Enterococcus faecium TX0133A]
 gi|314992765|ref|ZP_07858169.1| comEA protein [Enterococcus faecium TX0133B]
 gi|314996521|ref|ZP_07861559.1| comEA protein [Enterococcus faecium TX0133a01]
 gi|68194932|gb|EAN09401.1| Competence protein ComEA helix-hairpin-helix region [Enterococcus
           faecium DO]
 gi|313589307|gb|EFR68152.1| comEA protein [Enterococcus faecium TX0133a01]
 gi|313592698|gb|EFR71543.1| comEA protein [Enterococcus faecium TX0133B]
 gi|313595993|gb|EFR74838.1| comEA protein [Enterococcus faecium TX0133A]
 gi|313599710|gb|EFR78553.1| comEA protein [Enterococcus faecium TX0133C]
 gi|313643094|gb|EFS07674.1| comEA protein [Enterococcus faecium TX0133a04]
 gi|313643976|gb|EFS08556.1| comEA protein [Enterococcus faecium TX0082]
          Length = 242

 Score = 37.5 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647
           I  N      L ++P +G + AQ I+ F +   +   VE L +         EK      
Sbjct: 181 ININTATPSELQQIPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKTVEKL----- 235

Query: 648 ENKKLV 653
             K  V
Sbjct: 236 --KNFV 239


>gi|328873528|gb|EGG21895.1| replication factor C subunit [Dictyostelium fasciculatum]
          Length = 1578

 Score = 37.5 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 34/106 (32%), Gaps = 33/106 (31%)

Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI---- 687
           P+ G   +   +   +  K    TG L   +R + + +V   G   S  + +K       
Sbjct: 765 PNKGSKPEPRGAPKCLAKKYFTVTGVLDCFERTEIKGFVQLYGGQFSDNVIKKITHVVVG 824

Query: 688 --------------IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719
                         +             ++  + ++ E++FL ++ 
Sbjct: 825 EGGGEKKKEIIDDRL-------------REKSIVVLTEDEFLAMIN 857


>gi|300813436|ref|ZP_07093781.1| comEA protein [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512453|gb|EFK39608.1| comEA protein [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 204

 Score = 37.5 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642
             NN+I  N+     L+++P VG   A  I+++ +      +VE L         + EK 
Sbjct: 139 SYNNLINLNSASKDELMKIPGVGSKTADKIIDY-REKFQFKSVEDLKNVDGIGDKKFEKL 197

Query: 643 VS 644
             
Sbjct: 198 KD 199


>gi|118479493|ref|YP_896644.1| comE operon protein 1 [Bacillus thuringiensis str. Al Hakam]
 gi|229186567|ref|ZP_04313728.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus cereus BGSC 6E1]
 gi|118418718|gb|ABK87137.1| comE operon protein 1 [Bacillus thuringiensis str. Al Hakam]
 gi|228596826|gb|EEK54485.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus cereus BGSC 6E1]
          Length = 199

 Score = 37.5 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 24/63 (38%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              +  N      L ++  +G   A++I+++ +       +E LL+     +   EK   
Sbjct: 135 EEKVQINAASKEQLEKITGIGSRKAESILKYREEHGPFQKIEDLLEIDGIGVKSLEKIKD 194

Query: 645 SEI 647
             I
Sbjct: 195 QII 197


>gi|167037829|ref|YP_001665407.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167040727|ref|YP_001663712.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Thermoanaerobacter sp. X514]
 gi|320116246|ref|YP_004186405.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166854967|gb|ABY93376.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter sp. X514]
 gi|166856663|gb|ABY95071.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929337|gb|ADV80022.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 201

 Score = 37.5 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHE 640
             +  I  N      L  +P +G + A+ I+EF ++      +E ++    + P +    
Sbjct: 135 AKDKKININTATREELQTLPGIGPVTAERIIEFRESKGPFKKIEDIVNVSRIGPKMFEQI 194

Query: 641 KNV 643
           K+ 
Sbjct: 195 KDK 197


>gi|261409549|ref|YP_003245790.1| DNA integrity scanning protein DisA [Paenibacillus sp. Y412MC10]
 gi|329929243|ref|ZP_08283002.1| hypothetical protein HMPREF9412_6022 [Paenibacillus sp. HGF5]
 gi|261286012|gb|ACX67983.1| DNA integrity scanning, DisA, linker region [Paenibacillus sp.
           Y412MC10]
 gi|328936802|gb|EGG33241.1| hypothetical protein HMPREF9412_6022 [Paenibacillus sp. HGF5]
          Length = 358

 Score = 37.5 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 21/51 (41%)

Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627
            +N   + +++ +        L  V  +G++ A+ I E  +  +    ++ 
Sbjct: 306 IRNLVDQFHDLSSIMTASIHELDEVDGIGEVRARTIKEGLKRLQEQVFIDR 356


>gi|194757423|ref|XP_001960964.1| GF11242 [Drosophila ananassae]
 gi|190622262|gb|EDV37786.1| GF11242 [Drosophila ananassae]
          Length = 854

 Score = 37.5 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 12/72 (16%)

Query: 647 IENKKLVFTG------TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLE 699
           + N+ LVF+G       L++  R         LGA V   + ++T  ++   N G+ K+ 
Sbjct: 567 LRNQNLVFSGLVPTQMKLEQ-SRAYF--IAKSLGAEVQGNIGKETTHLVA-VNAGTYKVN 622

Query: 700 KA-QQLGVKIMN 710
            A ++  +K++N
Sbjct: 623 AAKKEANIKVVN 634


>gi|167574166|ref|ZP_02367040.1| Transposase and inactivated derivatives-like protein [Burkholderia
           oklahomensis C6786]
          Length = 203

 Score = 37.5 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691
           N    +  +++VFTGTL  ++R +A       G  V A + + T +++VG
Sbjct: 155 NPDGVLAGEEMVFTGTLTLLRR-EAAALAAMAGCDVVASVRKTTTLLVVG 203


>gi|149050648|gb|EDM02821.1| rCG61927 [Rattus norvegicus]
          Length = 977

 Score = 37.5 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 28/365 (7%), Positives = 59/365 (16%), Gaps = 18/365 (4%)

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205
           G       RGDG  G+          T P  +  ++          Y   + F   N   
Sbjct: 306 GSTPRIVSRGDGTPGKCCDVFECVNETKPACVFNSVE---------YYDGDMFRMDNCRF 356

Query: 206 IAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL-------GKTSEIFAKGQYEML 258
                            +                   +       G  +    +   +  
Sbjct: 357 CRCQGGVSICFTAQCGELNCERYYVPEGECCPVCEDPIYPFNNPAGCYANGQIRAHGDRW 416

Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318
           ++  C      NG           S  + +K      P   +     +D  +  +     
Sbjct: 417 REDDCTFCQCINGEPHCVATACGQSCMHPVKVPGECCPVCEEPTYITIDPPACGELSNCT 476

Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378
            +    +   K       T       +                 +               
Sbjct: 477 LKEKDCVYGFKLDHNGCRTCQCKNREERCLALKRACTLDCPFGFLTDVHNCELCQCRPRP 536

Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKR--AGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436
            K              +R      + R      +P      +  +               
Sbjct: 537 KKCRPTICDKFCPLGFLRNKHGCDICRCKKCPELPCSKVCPLGFQEDSHGCLICKCRGTC 596

Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496
                    N ++                   +                      D F  
Sbjct: 597 LSMDGHHHKNEESWHDGCRECYCHNGKEMCALITCPVPACGNPTIRPGQCCPSCADDFVV 656

Query: 497 SEDPA 501
            +   
Sbjct: 657 QKPEL 661


>gi|316974128|gb|EFV57654.1| putative BRCA1 domain protein [Trichinella spiralis]
          Length = 1033

 Score = 37.5 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFL 717
           R K  + +  +G  VS  ++ K D +I  +  GS K  +A    V I+   +++ +
Sbjct: 137 RDKLHDMILWMGGSVSRSMTSKCDFLIAAE-VGSLKY-RAACGKVPILTP-EWVKM 189


>gi|193213289|ref|YP_001999242.1| excinuclease ABC subunit C [Chlorobaculum parvum NCIB 8327]
 gi|193086766|gb|ACF12042.1| excinuclease ABC, C subunit [Chlorobaculum parvum NCIB 8327]
          Length = 629

 Score = 37.5 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 15/139 (10%)

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG--FGDVSVTNLYDSI 542
            +  + L         A   +   +IF    R   +  K    L          + +   
Sbjct: 499 NVAWKALQELGIDVPVAGLAKRLEEIFVPNERDPYNLPKTSPALKLLQQLRDEAHRFAIT 558

Query: 543 NKRRNISLERFIFSL-GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601
             R+  S       L GI+ VG + A  L   + S +  A+               L  V
Sbjct: 559 YHRKLRSDRTIRTELTGIKGVGEKSAEKLLSRFGSVETVAKA----------SIEELSEV 608

Query: 602 PLVGDIIAQAIVEFYQNPR 620
              G   A++I  +++   
Sbjct: 609 T--GRKTAESIYRYFRQQD 625


>gi|160946935|ref|ZP_02094138.1| hypothetical protein PEPMIC_00896 [Parvimonas micra ATCC 33270]
 gi|158447319|gb|EDP24314.1| hypothetical protein PEPMIC_00896 [Parvimonas micra ATCC 33270]
          Length = 298

 Score = 37.5 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 53/151 (35%), Gaps = 30/151 (19%)

Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLS--YQNFAQEINNIIAHNNDDWLSLIRVPLV---- 604
           E    +L  +     ++  +AK   S           ++  +    +   I V  +    
Sbjct: 48  EDLNNTLNAQPCIVAVSLGIAKVLKSKSVDCEYAAGLSLGEYTALAYSEAISVKDILELV 107

Query: 605 ---GDIIAQAIVEF------YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655
               +I++ A+ E       +        +E ++K++         N +S    K++V T
Sbjct: 108 KKRSEIMSNAVPENTGMAAIFNCEA--KIIENVIKDIENL---EIANYNSP---KQIVIT 159

Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686
           G++  I   +A   +  LG       S+K +
Sbjct: 160 GSMNSI--DEAILKLKDLGYK-----SKKLN 183


>gi|195996927|ref|XP_002108332.1| hypothetical protein TRIADDRAFT_52697 [Trichoplax adhaerens]
 gi|190589108|gb|EDV29130.1| hypothetical protein TRIADDRAFT_52697 [Trichoplax adhaerens]
          Length = 873

 Score = 37.5 bits (85), Expect = 8.5,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 14/57 (24%)

Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS---------KLEKAQQLGVKIMNE 711
           ++ ++ + + G  +   +SR TD+ I      S         K+++AQ L + ++NE
Sbjct: 379 NQMKKEIEEFGGKIDEKISRNTDLCI-----SSHVEMIRNKDKVQQAQALNLPVVNE 430


>gi|307180331|gb|EFN68364.1| PAX-interacting protein 1 [Camponotus floridanus]
          Length = 1274

 Score = 37.5 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 650 KKLV-FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708
           K++V F+G  +  +R K +  +  LGA  +   S+   +++     G K +KA++    +
Sbjct: 908 KQIVSFSG-FEGEERAKVKHMLEALGAKYTNYFSKHNTLLVCRRPDGQKYKKAREWSTNV 966

Query: 709 MNEEQFLFLL 718
           +N +    LL
Sbjct: 967 VNAQWLTDLL 976


>gi|150400569|ref|YP_001324335.1| Hef nuclease [Methanococcus aeolicus Nankai-3]
 gi|150013272|gb|ABR55723.1| DEAD/DEAH box helicase domain protein [Methanococcus aeolicus
           Nankai-3]
          Length = 808

 Score = 37.5 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614
               +GA +A +L   + + +N  +               L  V  +G+I A+ I  
Sbjct: 754 SFPDIGALMAENLLIKFGTIENIVKA----------SVEELREVEGIGEITAKKIKS 800


>gi|238650574|ref|YP_002916426.1| virB6e protein [Rickettsia peacockii str. Rustic]
 gi|238624672|gb|ACR47378.1| virB6e protein [Rickettsia peacockii str. Rustic]
          Length = 1153

 Score = 37.5 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 25/292 (8%), Positives = 75/292 (25%), Gaps = 23/292 (7%)

Query: 373  LHNEDYIKGLDASGKVMRGGRDIRVGDRVLV----KRAGEVIPKVVDIIVNERHPDAQPF 428
            L +   I+    + + ++  + + +G+++       + G +   V   + +    +    
Sbjct: 832  LRSWQEIEHRVDTKRKLKEEKRVGIGEKIYAGYTGIKRGVLTAIVGKDLRDAYEGNLTSA 891

Query: 429  SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             +  F              K  +    H              +           +E  G+
Sbjct: 892  EWHDFEYNDPRLRTYSEKLKDDEKAREHEELQMHINKEALAAQADILSPEYLAILEKAGR 951

Query: 489  QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL-YDSINKRRN 547
                 +++       I         +        +              +          
Sbjct: 952  HSDVEYYQELAQRKLIHEVHGRLFEEGEPVMMGDRFMREKATDSQMRDMIDNAHRKHAEF 1011

Query: 548  ISLERFIFSLGIRHVGAEIA--------RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            I  +R+I       +  E A        + L  ++       +E+  +IA    D     
Sbjct: 1012 IDGDRYIRRQEHYDIMHEKAQENLEQTYKELKDHFKRDDIKIEEMPALIAQKVKDTAEGA 1071

Query: 600  RVPLVGDIIAQAIVEFYQNPRN-------ICAVEALLKEVSPSIGRHEKNVS 644
             +      I + +  F  + +N       +  +E   + ++  +      ++
Sbjct: 1072 EIDQ---KITEELNNFNADVKNYEYSTEVLNKIEDRKQAITDEVNAQIDKIN 1120


>gi|260587221|ref|ZP_05853134.1| excinuclease ABC subunit C [Blautia hansenii DSM 20583]
 gi|331083542|ref|ZP_08332653.1| UvrABC system protein C [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260542416|gb|EEX22985.1| excinuclease ABC subunit C [Blautia hansenii DSM 20583]
 gi|330403753|gb|EGG83305.1| UvrABC system protein C [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 620

 Score = 37.5 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 6/63 (9%), Positives = 21/63 (33%), Gaps = 10/63 (15%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +G    ++L +++       +              +L  +  + +  A+ + +F+ 
Sbjct: 568 DIPGIGETRRKALMRHFKGLDGIREA----------SVETLSNIESMNEKAARQVYDFFH 617

Query: 618 NPR 620
              
Sbjct: 618 KKE 620


>gi|229586348|ref|YP_002844849.1| VirB6 [Rickettsia africae ESF-5]
 gi|228021398|gb|ACP53106.1| VirB6 [Rickettsia africae ESF-5]
          Length = 1153

 Score = 37.5 bits (85), Expect = 8.7,   Method: Composition-based stats.
 Identities = 26/292 (8%), Positives = 75/292 (25%), Gaps = 23/292 (7%)

Query: 373  LHNEDYIKGLDASGKVMRGGRDIRVGDRVLV----KRAGEVIPKVVDIIVNERHPDAQPF 428
            L +   IK    + + ++  + + +G+++       + G +   V   + +    +    
Sbjct: 832  LRSWQEIKHRVDTKRKLKEEQRVGIGEKIYAGYTGIKRGALTAIVGKDLRDAYEGNLTSA 891

Query: 429  SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488
             +  F              K  +    H              +           +E  G+
Sbjct: 892  EWHDFEYNDPRLRTYSEKLKDDEKAREHEELQMHINKEALAAQADILSPEYLARLEKAGR 951

Query: 489  QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL-YDSINKRRN 547
                 +++       I         +        +              +          
Sbjct: 952  HSDVEYYQELAQRKLIHEVHGRLFEEGEPVMMGDRFMCEKATDSQMRDMIDNAHRKYAEF 1011

Query: 548  ISLERFIFSLGIRHVGAEIA--------RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
            I  +R+I       +  E A        + L  ++       +E+  +IA    D     
Sbjct: 1012 IDGDRYIRRQEHYDIMHEKAQENLEQTYKELKDHFKRDDIKIEEMPALIAQKVKDTAEGA 1071

Query: 600  RVPLVGDIIAQAIVEFYQNPRN-------ICAVEALLKEVSPSIGRHEKNVS 644
             +      I + +  F  + +N       +  +E   + ++  +      ++
Sbjct: 1072 EIDQ---KITEELNNFNADVKNYEYSTEVLNKIEDRKQAITDEVNAQIDKIN 1120


>gi|284166080|ref|YP_003404359.1| ERCC4 domain protein [Haloterrigena turkmenica DSM 5511]
 gi|284015735|gb|ADB61686.1| ERCC4 domain protein [Haloterrigena turkmenica DSM 5511]
          Length = 220

 Score = 37.5 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
            I  +G E+A +L + Y + ++  +               L  +  +G+  A+ I   ++
Sbjct: 165 CIEGIGPELAATLYERYPTVESLLEA----------SLEELTEIEGIGERRARTIDAAFR 214

Query: 618 NP 619
             
Sbjct: 215 ED 216


>gi|284161344|ref|YP_003399967.1| DEAD/DEAH box helicase [Archaeoglobus profundus DSM 5631]
 gi|284011341|gb|ADB57294.1| DEAD/DEAH box helicase domain protein [Archaeoglobus profundus DSM
           5631]
          Length = 736

 Score = 37.5 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 10/56 (17%)

Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613
            I  +G  IAR+L +++ + +N A+               L++VP VG   A+ IV
Sbjct: 676 SISDIGPVIARNLLEHFQTIENIAKA----------SVEDLMKVPKVGKKTAEKIV 721


>gi|300914765|ref|ZP_07132081.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter sp. X561]
 gi|307724001|ref|YP_003903752.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Thermoanaerobacter sp. X513]
 gi|300889700|gb|EFK84846.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter sp. X561]
 gi|307581062|gb|ADN54461.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter sp. X513]
          Length = 216

 Score = 37.5 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHE 640
             +  I  N      L  +P +G + A+ I+EF ++      +E ++    + P +    
Sbjct: 150 AKDKKININTATREELQTLPGIGPVTAERIIEFRESKGPFKKIEDIVNVSRIGPKMFEQI 209

Query: 641 KNV 643
           K+ 
Sbjct: 210 KDK 212


>gi|254478381|ref|ZP_05091759.1| excinuclease ABC, C subunit [Carboxydibrachium pacificum DSM 12653]
 gi|214035639|gb|EEB76335.1| excinuclease ABC, C subunit [Carboxydibrachium pacificum DSM 12653]
          Length = 617

 Score = 37.5 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 10/87 (11%)

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
                 + +     R   S       L I+ +G + A+ L + + S +   +        
Sbjct: 538 QIQEEAHRFAITFHRERQSKRFKTDLLNIKGIGEKRAKVLYEAFGSIEEIKKA------- 590

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                  L +V  + +  A+A+ E++ 
Sbjct: 591 ---SLEELKKVKGMNERSAKAVYEYFH 614


>gi|119714733|ref|YP_921698.1| DNA integrity scanning protein DisA [Nocardioides sp. JS614]
 gi|119535394|gb|ABL80011.1| protein of unknown function DUF147 [Nocardioides sp. JS614]
          Length = 360

 Score = 37.5 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 10/69 (14%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618
           +  + A +   L  ++ + Q                   L  V  VG++ A+++ E    
Sbjct: 300 VPRLPATVVDRLVDHFGTLQKLLSA----------GVDDLQAVEGVGELRARSVREGLSR 349

Query: 619 PRNICAVEA 627
                 +E 
Sbjct: 350 LAESTILER 358


>gi|20808370|ref|NP_623541.1| excinuclease ABC subunit C [Thermoanaerobacter tengcongensis MB4]
 gi|32130303|sp|Q8R8M9|UVRC_THETN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|20516981|gb|AAM25145.1| Nuclease subunit of the excinuclease complex [Thermoanaerobacter
           tengcongensis MB4]
          Length = 617

 Score = 37.5 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 10/87 (11%)

Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590
                 + +     R   S       L I+ +G + A+ L + + S +   +        
Sbjct: 538 QIQEEAHRFAITFHRERQSKRFKTDLLNIKGIGEKRAKVLYEAFGSIEEIKKA------- 590

Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                  L +V  + +  A+A+ E++ 
Sbjct: 591 ---SLEELKKVKGMNERSAKAVYEYFH 614


>gi|307266907|ref|ZP_07548426.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918064|gb|EFN48319.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 204

 Score = 37.5 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNV 643
             I  N      L  +P +G + A+ I+EF ++  +   +E ++    + P +    K+ 
Sbjct: 141 EKININTATKEELQTLPGIGPVTAERIIEFRESKGSFKKIEDIMNVPRIGPKMFEQIKDK 200


>gi|260893478|ref|YP_003239575.1| Holliday junction DNA helicase RuvA [Ammonifex degensii KC4]
 gi|260865619|gb|ACX52725.1| Holliday junction DNA helicase RuvA [Ammonifex degensii KC4]
          Length = 193

 Score = 37.5 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 32/145 (22%)

Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594
             +  +          + F+  L I  VG + A +L   + S +   + I       ++D
Sbjct: 54  REDRPEIYGFGDREERDFFLRLLKIGGVGPKTALALLSCF-SVEELREAI------RSED 106

Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLV 653
              L  VP VG   A               +  L +E  +P  G    +  + + N    
Sbjct: 107 LEKLTVVPGVGKKTA------------RRLLLELKEEKGAPVEGEAAADAVAALINL--- 151

Query: 654 FTGTLQKIQRHKAQEY---VTQLGA 675
                   +R +A+E        GA
Sbjct: 152 ------GYRRREAEEAVREAKARGA 170


>gi|227872305|ref|ZP_03990662.1| excision endonuclease subunit UvrC [Oribacterium sinus F0268]
 gi|227841849|gb|EEJ52122.1| excision endonuclease subunit UvrC [Oribacterium sinus F0268]
          Length = 637

 Score = 37.5 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622
           +   ++  ++    N D+  L+  P + +  AQ+++ F++N RN 
Sbjct: 588 KALMRKFRDLEGVANADFEELLSCPGMDEKSAQSVLHFFKN-RNR 631


>gi|194334457|ref|YP_002016317.1| excinuclease ABC subunit C [Prosthecochloris aestuarii DSM 271]
 gi|229558464|sp|B4S9K0|UVRC_PROA2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|194312275|gb|ACF46670.1| excinuclease ABC, C subunit [Prosthecochloris aestuarii DSM 271]
          Length = 616

 Score = 37.5 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 33/92 (35%), Gaps = 13/92 (14%)

Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSL-GIRHVGAEIARSLAKYYLSYQNFAQEINNII 588
                  + +     R+  +       L  I  +G + A  L +++ S +  A+      
Sbjct: 536 QQIRDEAHRFAITYHRKLRTKRTIQTGLTDIAGIGEKSAMKLLEHFGSIEQIAKA----- 590

Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
                +   ++ V   G   A+AI+ +++  +
Sbjct: 591 -----EKEEILAVT--GPKTAEAILSYFRKKQ 615


>gi|322694355|gb|EFY86187.1| isocitrate dehydrogenase subunit 2 precursor [Metarhizium acridum
           CQMa 102]
          Length = 381

 Score = 37.5 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 21/59 (35%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
                   + +LA+ Y +      +         +  +SLI    +G  IA ++ + + 
Sbjct: 16  CLRAAPRASWALARCYSTAGERVAKYEGTKDAQGNYLVSLIEGDGIGPEIAVSVKDIFA 74


>gi|315652500|ref|ZP_07905484.1| glutamate dehydrogenase [Eubacterium saburreum DSM 3986]
 gi|315485216|gb|EFU75614.1| glutamate dehydrogenase [Eubacterium saburreum DSM 3986]
          Length = 458

 Score = 37.5 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGT--LQKIQRHKAQEYVTQLGAVVS 678
           +   +    K  + E++ K +V TG+  +       A +   QLGA V 
Sbjct: 227 LVYILDEMLKANNKELKGKTVVVTGSGNVAIY----AIQKAQQLGAKVV 271


>gi|308499697|ref|XP_003112034.1| CRE-MUS-101 protein [Caenorhabditis remanei]
 gi|308268515|gb|EFP12468.1| CRE-MUS-101 protein [Caenorhabditis remanei]
          Length = 1198

 Score = 37.5 bits (85), Expect = 9.2,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 663 RHKAQEYVTQLGAVVSAILSR-KTDIIIVGDNPGSKLEKAQQLG-VKIM 709
           R    + V + G  V   +S+ +   +I     G K  KA +   +KI+
Sbjct: 246 RANLMQLVEEHGGKVYGNMSKPRCTHLISDKTSGKKYTKAVEWKTIKIV 294


>gi|32266380|ref|NP_860412.1| hypothetical protein HH0881 [Helicobacter hepaticus ATCC 51449]
 gi|32262430|gb|AAP77478.1| conserved hypothetical protein [Helicobacter hepaticus ATCC
          51449]
          Length = 540

 Score = 37.5 bits (85), Expect = 9.3,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 11/72 (15%)

Query: 10 EALSIEQARKELSSLEQEISY-HD---DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65
          + + I   +KEL +LE ++   H+     Y       +    Y+ L    + +       
Sbjct: 26 DDMKISDIQKELQTLENKLDESHNAWLKHY-------MSLENYNELTNEMNTLEKEIQSY 78

Query: 66 ARSEDPNGPLNK 77
            +  P+    +
Sbjct: 79 IHTAPPHSLTQR 90


>gi|328802685|ref|NP_001192227.1| cysteine-rich motor neuron 1 protein [Bos taurus]
 gi|296482636|gb|DAA24751.1| cysteine rich transmembrane BMP regulator 1 (chordin-like) [Bos
           taurus]
          Length = 1035

 Score = 37.5 bits (85), Expect = 9.4,   Method: Composition-based stats.
 Identities = 41/445 (9%), Positives = 87/445 (19%), Gaps = 50/445 (11%)

Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----------SLNIPEIIEVRGE----- 190
           G       RGDG  G+          T P  +             +      R +     
Sbjct: 306 GSTPRIVSRGDGTPGKCCDVFECVNETKPACVFNNVEYGDGDMFRMDNCRFCRCQGGVSI 365

Query: 191 VYISKNDFLALNDEMIAVGRKPYANP------RNAASGILR----------RLNPTDITR 234
            + ++   L+     +  G              N A               R +     +
Sbjct: 366 CFTAQCGELSCERYYMPEGECCPVCEDPVYPLNNPAGCYANGQIHAHGDRWREDDCTFCQ 425

Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294
            +N   H +            ++  +   +                + +     K     
Sbjct: 426 CINGEPHCVATACGQSCMSPVKVPGECCPVCEEPTYITIDPPACGELSNCTLTEKDCIYG 485

Query: 295 LPYDIDGLVYKV----DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350
              D +G         +E     + G     P              T       +  R  
Sbjct: 486 FKLDHNGCRTCQCKNREELCTGLRRGCTLNCP---FGFLTDAYGCETCQCRPRPRKCRPT 542

Query: 351 ILTPVARL-EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR--------- 400
           +           N  G  I       E     + + G        +    R         
Sbjct: 543 VCEKHCPFGYLKNKHGCDICRCKKCPELRCSKICSLGFQKDSHGCLICKCREVSASAGPP 602

Query: 401 --VLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
                  + +          ++   +    S    C +    V    NP          C
Sbjct: 603 VLSGTCLSMDGHHHKNGESWHDGCRECYCHSGREMCALITCPVPACGNPTIHPGRCCPSC 662

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518
           +        +L       +             +D   +    +  +    ++      Q 
Sbjct: 663 SDDFVVQKPELSTPSICHAPGGEYFVEGETWHIDTCTQCTCHSGRVLCETEVCPPLLCQN 722

Query: 519 TSTTKIENILGFGDVSVTNLYDSIN 543
            + T+        D  +       +
Sbjct: 723 PTRTQDSCCPQCPDEPLQPSSSHND 747


>gi|328791261|ref|XP_001122621.2| PREDICTED: NF-X1-type zinc finger protein NFXL1-like [Apis
           mellifera]
          Length = 828

 Score = 37.5 bits (85), Expect = 9.6,   Method: Composition-based stats.
 Identities = 25/356 (7%), Positives = 67/356 (18%), Gaps = 18/356 (5%)

Query: 170 IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG-RKPYANPRNAA--SGILRR 226
                ++         E       +K   L  +         +                 
Sbjct: 199 CYCGKQIPQQRRCNAKEWSCGTICNKKYKLCSHTCKEICHSGECPPCSEVLLLECHCKIN 258

Query: 227 LNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYN 286
                            G+               +   G  +    R         +   
Sbjct: 259 KELKQCYESSWICDKPCGRLLSCNVHTCLGKCHLVNDCGSCLLEQNRTCPCGKKRYAISC 318

Query: 287 EMKS---IRSTLPYDIDGLVYKVDEFSLQKQLG-ERARSPRWMISHKFAEKQASTRLLDI 342
           + +       T    ++   +  +      + G       +      + ++ A  +    
Sbjct: 319 KQEQLPTCGDTCGKLLNCGSHYCNMRCHTDRCGQCLEVVTKSCRCGNYQKEIACGKEFHC 378

Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHN-EDYIKGLDASGKVMRGGRD---IRVG 398
                         RL   ++      +  + N  +  + +  +    R  +       G
Sbjct: 379 -------NKKCMQMRLCGRHLCNKKCCDCLIKNTYNICEKICDNTLNCRKHKCAAPCHSG 431

Query: 399 DRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458
                 R   +  K     +       +    P     C+   +     +         C
Sbjct: 432 PCYPCARTDIIQCKCGYNKIIVPCGTVKKIKPPVCNKSCKIPPICHHPKRETHKCHQGPC 491

Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ 514
                      +R  H           +   + D   +   P    +    + TL 
Sbjct: 492 PPCKKICNLVYKRCGHLCVAICHTKVWVKVYKNDTKTQPIGPWDIQKETMQLKTLP 547


>gi|325958893|ref|YP_004290359.1| UvrABC system protein C [Methanobacterium sp. AL-21]
 gi|325330325|gb|ADZ09387.1| UvrABC system protein C [Methanobacterium sp. AL-21]
          Length = 590

 Score = 37.5 bits (85), Expect = 9.6,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 10/59 (16%)

Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617
           I  VG +    L K++ S +N              D   L +V  +   +A  I + + 
Sbjct: 535 IPGVGNKRRMLLLKHFGSMENIMNA----------DLDELQQVKGISKKLANIIHDHFD 583


>gi|315651796|ref|ZP_07904800.1| excinuclease ABC subunit C [Eubacterium saburreum DSM 3986]
 gi|315485926|gb|EFU76304.1| excinuclease ABC subunit C [Eubacterium saburreum DSM 3986]
          Length = 615

 Score = 37.5 bits (85), Expect = 9.6,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 37/145 (25%), Gaps = 15/145 (10%)

Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF-----GDVSVTNLY 539
            +  Q ++ F         ++                    +  GF              
Sbjct: 481 NICLQVIEEFGLHIPVCGMVKDDNHRTRGLYYNNEEIPIDTHSQGFLLITRIQDEAHRFA 540

Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599
              ++      +       I  +G+   R+L K++   +N                  L+
Sbjct: 541 IEYHRSLRSKTQVKSILDDIDGIGSVRRRALMKHFKDIENIRNAT----------VEELM 590

Query: 600 RVPLVGDIIAQAIVEFYQNPRNICA 624
           ++  +    A A+ EF+   +    
Sbjct: 591 KIEGMNKKAAIAVNEFFIKAKQQNV 615


>gi|229062026|ref|ZP_04199351.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus cereus AH603]
 gi|228717178|gb|EEL68853.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus cereus AH603]
          Length = 199

 Score = 37.1 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 24/67 (35%)

Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640
             +    +  N      L ++  +G   A++I+++ +       +E LL+         E
Sbjct: 131 FSKSEGKVQINTASKEQLEKITGIGSRKAESILKYREEHGPFQKIEDLLEIDGIGAKSLE 190

Query: 641 KNVSSEI 647
           K     I
Sbjct: 191 KIKDQII 197


>gi|134056779|emb|CAK37687.1| unnamed protein product [Aspergillus niger]
          Length = 788

 Score = 37.1 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 646 EIENKKLVFTGTLQKIQR---HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702
            +    LVF+G L             +    GAV+++ ++  T  ++ G N   K+ +A 
Sbjct: 478 ILGGVTLVFSGVLPLGTDTQNADIXLWAKSFGAVIASKINMXTTHLVAGRNRTXKVREAT 537

Query: 703 QL-GVKIMNEEQFL------FLLQQYNTTLRIHDDD 731
           +   VKI+  +  L        L +    L +H DD
Sbjct: 538 RYPKVKIVTTQWLLDCLTQWKRLAEEPYLLPVHPDD 573


>gi|118444996|ref|YP_878985.1| RecD/TraA family helicase [Clostridium novyi NT]
 gi|118135452|gb|ABK62496.1| helicase, RecD/TraA family [Clostridium novyi NT]
          Length = 735

 Score = 37.1 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 13/110 (11%), Positives = 35/110 (31%), Gaps = 15/110 (13%)

Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565
               +   Q  +           G      +   + I       +E+++ S  I  +G  
Sbjct: 37  CIPYVMEGQNLKLQGQWVNHPHFGQQFKVTS--CEEIVPNSLEGIEKYLSSGIISGIGPV 94

Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG----DIIAQA 611
            A+ + +++             +   ++D   L  +  +G    + IA++
Sbjct: 95  TAKKIVEHFG---------EKTLDVLDEDIEKLKEIDGIGTKKIETIAKS 135


>gi|170687517|ref|ZP_02878734.1| comE operon protein 1 [Bacillus anthracis str. A0465]
 gi|170668712|gb|EDT19458.1| comE operon protein 1 [Bacillus anthracis str. A0465]
          Length = 198

 Score = 37.1 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 24/63 (38%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644
              +  N      L ++  +G   A++I+++ +       +E LL+     +   EK   
Sbjct: 134 EEKVRINAASKEQLEKITGIGSRKAESILKYREEHGPFQKIEDLLEIDGIGVKSLEKIKD 193

Query: 645 SEI 647
             I
Sbjct: 194 QII 196


>gi|160943016|ref|ZP_02090254.1| hypothetical protein FAEPRAM212_00493 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445710|gb|EDP22713.1| hypothetical protein FAEPRAM212_00493 [Faecalibacterium prausnitzii
           M21/2]
          Length = 617

 Score = 37.1 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 35/329 (10%), Positives = 80/329 (24%), Gaps = 26/329 (7%)

Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363
           Y +D+  + K +   A  P      +   ++  + +     Q G    L  +A    V  
Sbjct: 303 YYLDDEQIPKIIAVDALPPDMDALQQALNQKRGSEVQLYVPQRGDKAHLVEMAHTNAVE- 361

Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423
               +   +       K LD   +V+   +  R  +   +   G+       +   +  P
Sbjct: 362 ---RLARESGRYAREEKLLDELAQVLGLSKPPRAIESYDISNWGDGSSVCGMVTFKDGKP 418

Query: 424 DAQPFSFPSFCPICQSRVVRDLNPK------TGKLVAAHRCTGGLACSAQQLERLKHFVS 477
               +       +  +     L           +  AA    G  + +    +     + 
Sbjct: 419 FKAGYRKFKMKTVAGTDDYASLAETVSRRAAEYEKYAAQAENGQPSGNWFGQKPDLLLMD 478

Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF------TLQRRQQTSTTKIENILGFG 531
                +                    ++              +             +   
Sbjct: 479 GGRGQVSAAKDALAGTALADVPLYGMVKDDHHRTRAIVDSDGREIAINMNRGTFTFITAI 538

Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591
                   ++  K++            +  VG + A++L   + S               
Sbjct: 539 QDETHRFANAYRKQQMKQKSYSSTLTEVPGVGPKTAKALLAQFKSVGAVKDATP------ 592

Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
                 L   P VG  +AQ I E++    
Sbjct: 593 ----DQLENTPGVGRQLAQTIYEYFHREA 617


>gi|239637599|ref|ZP_04678571.1| ComE operon protein 1 [Staphylococcus warneri L37603]
 gi|239596817|gb|EEQ79342.1| ComE operon protein 1 [Staphylococcus warneri L37603]
          Length = 225

 Score = 37.1 bits (84), Expect = 10.0,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%)

Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641
              I  N      L++VP +G   A+ I+E+     +  +++ L           EK
Sbjct: 162 KAPINLNLATEEQLMKVPGIGPSKAKEIIEYKNQKGSFNSIDDLKNIKGFGSKTFEK 218


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.123    0.362 

Lambda     K      H
   0.267   0.0378    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,825,396,162
Number of Sequences: 14124377
Number of extensions: 415625132
Number of successful extensions: 1275604
Number of sequences better than 10.0: 4781
Number of HSP's better than 10.0 without gapping: 3832
Number of HSP's successfully gapped in prelim test: 949
Number of HSP's that attempted gapping in prelim test: 1248194
Number of HSP's gapped (non-prelim): 6326
length of query: 731
length of database: 4,842,793,630
effective HSP length: 147
effective length of query: 584
effective length of database: 2,766,510,211
effective search space: 1615641963224
effective search space used: 1615641963224
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 85 (37.5 bits)